Citrus Sinensis ID: 020510

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-----
Protein Sequence
MWGIIRQKVAAGGGSPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPAWLISSNKL
Secondary Structure (PSIPRED)
ccccccHHHcccccccccccccccccccccccccHHcHHHHHHHHHHHHHHHccccEEEEcccccccccccHHcHHHHHHHcccccccccccHHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHHHHHHHccccccccccEEEEccccccccccccccccHHHHHccccccEEEEcccHHHHHHHHHHHHcccccEEEEEcHHcccccccccccccccccccccccEEEEEEcccEEEEEccccHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHccEEEEccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccHHHcccccHHHHHHHHHHHHHHHHHHHHccccEEEEcHHHHHcccEEEEcHHHHHHHccccEccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEccccHHHccccHccccHHHHHHcccccEEEEcccHHHHHHHHHHHHHccccEEEEccHHHcccccccccccccccEEEEcccEEEEEccccEEEEEHHHHHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MWGIIRQKVaagggspvarirpVVSNLRNYSSAVKQMMVREALNSALdeemsadpkvfLMGEEVGEYQGAYKISKGLlekygpervldtpiteagftgIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAaksnymssgqisvpivfrgpngaaagvgaqhSHCYAAWyasvpglkvlspyssEDARGLLKaairdpdpvvflenellygesfpvsaevldssfclpigkakieregkdvTITAFSKIVGLSLKAAEILAKEGISAEVINlrsirpldrstinasvrktnrlvtveegfpqhgvgaeiwcaffppawlissnkl
Flexible Loop (DISEMBL)
MWGIIRQKvaagggspvarirpvvsNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGkakieregkdvtITAFSKIVGLSLKAAEILAKEgisaevinlrsirpldrstinasvrktnrlvTVEEGFPQHGVGAEIWCAFFPPAwlissnkl
Low Complexity Region (SEG)
MWGIIRQKVAAGGGSPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPAWLISSNKL
Disordered region (IsUnstruct)
***IIR**VA******VARIRPVVSNLRNY*************************KVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPAWLI*****
Disordered Region (DISOPRED)
*************************************MVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPAWLISSNKL
Disordered Region (DISEMBL)
MWGIIRQKVAAGGGSPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPAWLISSNKL
Disordered Region (DISPRO)
*******************************SAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPAWLISSNKL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MWGIIRQKVAAGGGSPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPAWLISSNKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	325	2.2.26 [Sep-21-2011]
Q38799	363	Pyruvate dehydrogenase E1	yes	no	0.953	0.853	0.839	1e-151
Q6Z1G7	374	Pyruvate dehydrogenase E1	yes	no	0.846	0.735	0.923	1e-149
Q0J0H4	376	Pyruvate dehydrogenase E1	no	no	0.950	0.821	0.822	1e-147
P52904	359	Pyruvate dehydrogenase E1	N/A	no	0.926	0.838	0.849	1e-146
Q86HX0	356	Pyruvate dehydrogenase E1	yes	no	0.907	0.828	0.637	1e-109
P32473	366	Pyruvate dehydrogenase E1	yes	no	0.904	0.803	0.648	1e-108
Q09171	366	Pyruvate dehydrogenase E1	yes	no	0.858	0.762	0.664	1e-108
O44451	352	Pyruvate dehydrogenase E1	yes	no	0.858	0.792	0.663	1e-105
P11966	359	Pyruvate dehydrogenase E1	yes	no	0.858	0.777	0.657	1e-104
Q9D051	359	Pyruvate dehydrogenase E1	yes	no	0.858	0.777	0.646	1e-103

>sp|Q38799|ODPB1_ARATH Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial OS=Arabidopsis thaliana GN=PDH2 PE=1 SV=2

 Score =  536 bits (1380), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 262/312 (83%), Positives = 286/312 (91%), Gaps = 2/312 (0%)

Query: 1   MWGIIRQKVAAGGGSPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLM 60
           M GI+RQ+ A  G S + R R  + + R+Y++  K+M VR+ALNSA+DEEMSADPKVF+M
Sbjct: 1   MLGILRQR-AIDGASTLRRTRFALVSARSYAAGAKEMTVRDALNSAIDEEMSADPKVFVM 59

Query: 61  GEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFS 120
           GEEVG+YQGAYKI+KGLLEKYGPERV DTPITEAGFTGIGVGAAY GLKPVVEFMTFNFS
Sbjct: 60  GEEVGQYQGAYKITKGLLEKYGPERVYDTPITEAGFTGIGVGAAYAGLKPVVEFMTFNFS 119

Query: 121 MQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLS 180
           MQAIDHIINSAAKSNYMS+GQI+VPIVFRGPNGAAAGVGAQHS CYAAWYASVPGLKVL+
Sbjct: 120 MQAIDHIINSAAKSNYMSAGQINVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLA 179

Query: 181 PYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKD 240
           PYS+EDARGLLKAAIRDPDPVVFLENELLYGESFP+S E LDSSFCLPIGKAKIEREGKD
Sbjct: 180 PYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPISEEALDSSFCLPIGKAKIEREGKD 239

Query: 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGF 300
           VTI  FSK+VG +LKAAE LA+EGISAEVINLRSIRPLDR+TINASVRKT+RLVTVEEGF
Sbjct: 240 VTIVTFSKMVGFALKAAEKLAEEGISAEVINLRSIRPLDRATINASVRKTSRLVTVEEGF 299

Query: 301 PQHGVGAEIWCA 312
           PQHGV AEI CA
Sbjct: 300 PQHGVCAEI-CA 310

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 2EC: .EC: 4EC: .EC: 1

>sp|Q6Z1G7|ODPB1_ORYSJ Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial OS=Oryza sativa subsp. japonica GN=Os08g0536000 PE=2 SV=1

 Score =  527 bits (1358), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 254/275 (92%), Positives = 269/275 (97%)

Query: 35  KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEA 94
           K+M VREALNSALDEEMSADP VFLMGEEVGEYQGAYKISKGLL+KYGP+RVLDTPITEA
Sbjct: 39  KEMTVREALNSALDEEMSADPSVFLMGEEVGEYQGAYKISKGLLDKYGPDRVLDTPITEA 98

Query: 95  GFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGA 154
           GFTGIGVGAAY GL+PVVEFMTFNFSMQAIDHIINSAAKSNYMS+GQI+VPIVFRGPNGA
Sbjct: 99  GFTGIGVGAAYQGLRPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQINVPIVFRGPNGA 158

Query: 155 AAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESF 214
           AAGVGAQHS CYAAWYA VPGLKVL+PYS+EDARGLLKAAIRDPDPVVFLENELLYGESF
Sbjct: 159 AAGVGAQHSQCYAAWYAHVPGLKVLTPYSAEDARGLLKAAIRDPDPVVFLENELLYGESF 218

Query: 215 PVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRS 274
           PVSAEVLDSSFCLPIGKAKIE+EGKDVTITAFSK+VG +L+AAEIL+KEGISAEVINLRS
Sbjct: 219 PVSAEVLDSSFCLPIGKAKIEQEGKDVTITAFSKMVGYALQAAEILSKEGISAEVINLRS 278

Query: 275 IRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 309
           IRPLDR+TINASVRKTNRLVT+EEGFPQHGVGAEI
Sbjct: 279 IRPLDRATINASVRKTNRLVTLEEGFPQHGVGAEI 313

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 1

>sp|Q0J0H4|ODPB2_ORYSJ Pyruvate dehydrogenase E1 component subunit beta-2, mitochondrial OS=Oryza sativa subsp. japonica GN=Os09g0509200 PE=2 SV=1

 Score =  522 bits (1344), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 259/315 (82%), Positives = 283/315 (89%), Gaps = 6/315 (1%)

Query: 1   MWGIIRQKVAAGG--GSPVARIRPVVSNLRNYSSAV----KQMMVREALNSALDEEMSAD 54
           M G  R+++ +G   G  + R+RP  +   + + A     K+M VREALNSALDEEMSAD
Sbjct: 1   MLGAARRQLGSGPMLGQVLRRLRPATAAAADAARAYSAAAKEMTVREALNSALDEEMSAD 60

Query: 55  PKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF 114
           P VFLMGEEVGEYQGAYKISKGLL+KYGPERVLDTPITEAGFTGI VGAAY GL+PVVEF
Sbjct: 61  PSVFLMGEEVGEYQGAYKISKGLLDKYGPERVLDTPITEAGFTGIAVGAAYQGLRPVVEF 120

Query: 115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVP 174
           MTFNFSMQAIDHIINSAAKSNYMS+GQISVPIVFRGPNGAAAGVGAQHS CYAAWYA VP
Sbjct: 121 MTFNFSMQAIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYAHVP 180

Query: 175 GLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKI 234
           GLKVL PYS+EDARGLLKAAIRDPDPVVFLENELLYGESFP+SAEVLDSSF LPIGKAKI
Sbjct: 181 GLKVLVPYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPISAEVLDSSFALPIGKAKI 240

Query: 235 EREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLV 294
           EREGKDVTITA+SK+VG +L+AA+IL+KEGISAEVINLRSIRPLDR+TINASVRKTNRLV
Sbjct: 241 EREGKDVTITAYSKMVGYALQAADILSKEGISAEVINLRSIRPLDRATINASVRKTNRLV 300

Query: 295 TVEEGFPQHGVGAEI 309
           T+EE FPQHG+GAEI
Sbjct: 301 TIEESFPQHGIGAEI 315

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 1

>sp|P52904|ODPB_PEA Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pisum sativum PE=2 SV=1

 Score =  518 bits (1335), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 265/312 (84%), Positives = 277/312 (88%), Gaps = 11/312 (3%)

Query: 1   MWGIIRQKVAAGGGSPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLM 60
           M G+IR K           IRP  S  R   S+ KQM VR+ALNSALD EMSAD KVFLM
Sbjct: 1   MLGVIRNKT----------IRPSFSAFRF-FSSAKQMTVRDALNSALDVEMSADSKVFLM 49

Query: 61  GEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFS 120
           GEEVGEYQGAYK++KGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFS
Sbjct: 50  GEEVGEYQGAYKVTKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFS 109

Query: 121 MQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLS 180
           MQAIDHIINSAAKSNYMS+GQISVPIVFRG NG AAGVGAQHSHCYA+WY S PGLKVL 
Sbjct: 110 MQAIDHIINSAAKSNYMSAGQISVPIVFRGLNGDAAGVGAQHSHCYASWYGSCPGLKVLV 169

Query: 181 PYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKD 240
           P+S+EDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSF LPIGKAKIEREGKD
Sbjct: 170 PHSAEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFWLPIGKAKIEREGKD 229

Query: 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGF 300
           VTITAFSK+VG +LKAAEIL KEGISAEVINLRSIRPLDR TINASVRKTNRLVTVEEGF
Sbjct: 230 VTITAFSKMVGFALKAAEILEKEGISAEVINLRSIRPLDRPTINASVRKTNRLVTVEEGF 289

Query: 301 PQHGVGAEIWCA 312
           PQHGVGAEI  +
Sbjct: 290 PQHGVGAEICTS 301

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Pisum sativum (taxid: 3888)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 1

>sp|Q86HX0|ODPB_DICDI Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Dictyostelium discoideum GN=pdhB PE=1 SV=1

 Score =  396 bits (1017), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 190/298 (63%), Positives = 243/298 (81%), Gaps = 3/298 (1%)

Query: 15  SPVARIRP-VVSNLR--NYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY 71
           S + +I+P ++ N R    + A K++ VR+A+NSALDEE++ D KVF+MGEEV +Y GAY
Sbjct: 4   SILKKIQPSLLVNFRIITRTYATKEVTVRDAINSALDEELARDEKVFIMGEEVAQYNGAY 63

Query: 72  KISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSA 131
           KI+KGL +KYG +R++DTPITEAGF GIGVGAA  G +P++EFMTFNF+MQAIDHIINS+
Sbjct: 64  KITKGLFDKYGGDRIIDTPITEAGFAGIGVGAAMAGTRPIIEFMTFNFAMQAIDHIINSS 123

Query: 132 AKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLL 191
           AK++YMS G++  PIV+RGPNG    VGAQHS C+AAWY SVPGLKV++P+S+ D RGLL
Sbjct: 124 AKTHYMSGGKVFNPIVWRGPNGPPTAVGAQHSQCFAAWYGSVPGLKVVAPWSAADHRGLL 183

Query: 192 KAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVG 251
           K+AIRD +PVV+LE+ELLY   F +S +  D  + +PIGKAK+EREGKDVTI  FS+IV 
Sbjct: 184 KSAIRDDNPVVYLESELLYNYKFDLSDQEQDKEYLVPIGKAKVEREGKDVTIVGFSRIVS 243

Query: 252 LSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 309
             ++AAEILAKEGISAEVINLR+IRP+D  TI  S++KTN+LVTVEEG+ Q G+GAEI
Sbjct: 244 NCMEAAEILAKEGISAEVINLRTIRPIDAETIVNSLKKTNKLVTVEEGWAQSGIGAEI 301

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Dictyostelium discoideum (taxid: 44689)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 1

>sp|P32473|ODPB_YEAST Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PDB1 PE=1 SV=2

 Score =  390 bits (1002), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 192/296 (64%), Positives = 231/296 (78%), Gaps = 2/296 (0%)

Query: 15  SPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKIS 74
           +P + +RP  +      S+ K M VREALNSA+ EE+  D  VFL+GEEV +Y GAYK+S
Sbjct: 17  APTSFVRPSAAAAALRFSSTKTMTVREALNSAMAEELDRDDDVFLIGEEVAQYNGAYKVS 76

Query: 75  KGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKS 134
           KGLL+++G  RV+DTPITE GFTG+ VGAA  GLKP+VEFM+FNFSMQAIDH++NSAAK+
Sbjct: 77  KGLLDRFGERRVVDTPITEYGFTGLAVGAALKGLKPIVEFMSFNFSMQAIDHVVNSAAKT 136

Query: 135 NYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAA 194
           +YMS G     +VFRGPNGAA GVGAQHS  ++ WY S+PGLKVL PYS+EDARGLLKAA
Sbjct: 137 HYMSGGTQKCQMVFRGPNGAAVGVGAQHSQDFSPWYGSIPGLKVLVPYSAEDARGLLKAA 196

Query: 195 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSL 254
           IRDP+PVVFLENELLYGESF +S E L   F LP  KAKIEREG D++I  +++ V  SL
Sbjct: 197 IRDPNPVVFLENELLYGESFEISEEALSPEFTLPY-KAKIEREGTDISIVTYTRNVQFSL 255

Query: 255 KAAEILAKE-GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 309
           +AAEIL K+ G+SAEVINLRSIRPLD   I  +V+KTN L+TVE  FP  GVGAEI
Sbjct: 256 EAAEILQKKYGVSAEVINLRSIRPLDTEAIIKTVKKTNHLITVESTFPSFGVGAEI 311

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 1

>sp|Q09171|ODPB_SCHPO Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pdb1 PE=4 SV=1

 Score =  390 bits (1002), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 186/280 (66%), Positives = 230/280 (82%), Gaps = 1/280 (0%)

Query: 31  SSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTP 90
           S+ VK+M VR+ALNSA++EEM  D +VFL+GEEV +Y GAYKIS+GLL+K+GP+RV+DTP
Sbjct: 32  SNGVKEMTVRDALNSAMEEEMKRDDRVFLIGEEVAQYNGAYKISRGLLDKFGPKRVIDTP 91

Query: 91  ITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG 150
           ITE GFTG+  GAA+ GL+P+ EFMTFNFSMQAIDHI+NSAA++ YMS G  + PIVFRG
Sbjct: 92  ITEMGFTGLATGAAFAGLRPICEFMTFNFSMQAIDHIVNSAARTLYMSGGIQACPIVFRG 151

Query: 151 PNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLY 210
           PNG AA V AQHS  +A WY S+PGLKV+SPYS+EDARGLLKAAIRDP+PVV LENE+LY
Sbjct: 152 PNGPAAAVAAQHSQHFAPWYGSIPGLKVVSPYSAEDARGLLKAAIRDPNPVVVLENEILY 211

Query: 211 GESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEIL-AKEGISAEV 269
           G++FP+S E L   F LP G AK+ER GKD+TI   S  V  +L+AA+ L A  G+ AEV
Sbjct: 212 GKTFPISKEALSEDFVLPFGLAKVERPGKDITIVGESISVVTALEAADKLKADYGVEAEV 271

Query: 270 INLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 309
           INLRSIRPLD +TI ASV+KTNR+VTV++ + QHG+G+EI
Sbjct: 272 INLRSIRPLDINTIAASVKKTNRIVTVDQAYSQHGIGSEI 311

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 1

>sp|O44451|ODPB_CAEEL Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Caenorhabditis elegans GN=C04C3.3 PE=1 SV=2

 Score =  382 bits (982), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/279 (66%), Positives = 224/279 (80%)

Query: 31  SSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTP 90
           + A   M VR+ALN A+DEE+  D +VFLMGEEV +Y GAYKISKGL +K+G +RV+DTP
Sbjct: 19  TRAASTMTVRDALNQAMDEEIKRDDRVFLMGEEVAQYDGAYKISKGLWKKHGDKRVVDTP 78

Query: 91  ITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG 150
           ITE GF GI VGAA+ GL+P+ EFMTFNFSMQAID IINSAAK+ YMS+G++ VPIVFRG
Sbjct: 79  ITEMGFAGIAVGAAFAGLRPICEFMTFNFSMQAIDQIINSAAKTYYMSAGRVPVPIVFRG 138

Query: 151 PNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLY 210
           PNGAAAGV AQHS  ++AWYA  PGLKV+ PYS+EDA+GLLKAAIRD +PVVFLENE+LY
Sbjct: 139 PNGAAAGVAAQHSQDFSAWYAHCPGLKVVCPYSAEDAKGLLKAAIRDDNPVVFLENEILY 198

Query: 211 GESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVI 270
           G+SFPV  EVL   F +PIGKAKIER G  VTI ++S+ V  SL+AA+ L   G+SAEVI
Sbjct: 199 GQSFPVGDEVLSDDFVVPIGKAKIERAGDHVTIVSYSRGVEFSLEAAKQLEAIGVSAEVI 258

Query: 271 NLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 309
           NLRS+RP D  +I  SV KT+ LV+VE G+P  G+G+EI
Sbjct: 259 NLRSLRPFDFESIRQSVHKTHHLVSVETGWPFAGIGSEI 297

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Caenorhabditis elegans (taxid: 6239)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 1

>sp|P11966|ODPB_BOVIN Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Bos taurus GN=PDHB PE=1 SV=2

 Score =  378 bits (970), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/280 (65%), Positives = 221/280 (78%), Gaps = 1/280 (0%)

Query: 33  AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPIT 92
           A  Q+ VREA+N  +DEE+  D KVFL+GEEV +Y GAYK+S+GL +KYG +R++DTPI+
Sbjct: 29  AALQVTVREAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPIS 88

Query: 93  EAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN 152
           E GF GI VGAA  GL+P+ EFMTFNFSMQAID +INSAAK+ YMS G  SVPIVFRGPN
Sbjct: 89  EMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQSVPIVFRGPN 148

Query: 153 GAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGE 212
           GA+AGV AQHS C+AAWY   PGLKV+SP+SSEDA+GL+K+AIRD +PVV LENEL+YG 
Sbjct: 149 GASAGVAAQHSQCFAAWYGHCPGLKVVSPWSSEDAKGLIKSAIRDNNPVVVLENELMYGV 208

Query: 213 SFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINL 272
            F + +E     F +PIGKAKIER+G  VTI A S+ VG  L+AA +L+KEGI  EVINL
Sbjct: 209 PFELPSEAQSKDFLIPIGKAKIERQGTHVTIVAHSRPVGHCLEAATVLSKEGIECEVINL 268

Query: 273 RSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCA 312
           R+IRP+D  TI  SV KTN LVTVE G+PQ GVGAEI CA
Sbjct: 269 RTIRPMDIETIEGSVMKTNHLVTVEGGWPQFGVGAEI-CA 307

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 1

>sp|Q9D051|ODPB_MOUSE Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Mus musculus GN=Pdhb PE=1 SV=1

 Score =  376 bits (966), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 181/280 (64%), Positives = 222/280 (79%), Gaps = 1/280 (0%)

Query: 33  AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPIT 92
           A  Q+ VREA+N  +DEE+  D KVFL+GEEV +Y GAYK+S+GL +KYG +R++DTPI+
Sbjct: 29  AAVQLTVREAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPIS 88

Query: 93  EAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN 152
           E GF GI VGAA  GL+P+ EFMTFNFSMQAID +INSAAK+ YMS+G   VPIVFRGPN
Sbjct: 89  EMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSAGLQPVPIVFRGPN 148

Query: 153 GAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGE 212
           GA+AGV AQHS C+AAWY   PGLKV+SP++SEDA+GL+K+AIRD +PVV LENEL+YG 
Sbjct: 149 GASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVMLENELMYGV 208

Query: 213 SFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINL 272
           +F + AE     F +PIGKAKIER+G  +T+ A S+ VG  L+AA +L+KEGI  EVINL
Sbjct: 209 AFELPAEAQSKDFLIPIGKAKIERQGTHITVVAHSRPVGHCLEAAAVLSKEGIECEVINL 268

Query: 273 RSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCA 312
           R+IRP+D   I ASV KTN LVTVE G+PQ GVGAEI CA
Sbjct: 269 RTIRPMDIEAIEASVMKTNHLVTVEGGWPQFGVGAEI-CA 307

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	325
118481185	373	unknown [Populus trichocarpa]	0.956	0.833	0.895	1e-161
224053535	358	predicted protein [Populus trichocarpa]	0.938	0.851	0.900	1e-158
296088722	429	unnamed protein product [Vitis vinifera]	0.950	0.720	0.887	1e-158
225425166	367	PREDICTED: pyruvate dehydrogenase E1 com	0.950	0.841	0.887	1e-158
449445580	372	PREDICTED: pyruvate dehydrogenase E1 com	0.950	0.830	0.877	1e-156
449519858	372	PREDICTED: LOW QUALITY PROTEIN: pyruvate	0.950	0.830	0.877	1e-156
255543140	368	pyruvate dehydrogenase, putative [Ricinu	0.947	0.836	0.884	1e-155
224075515	351	predicted protein [Populus trichocarpa]	0.898	0.831	0.924	1e-155
357501349	361	Pyruvate dehydrogenase E1 component subu	0.929	0.836	0.878	1e-155
363807782	360	uncharacterized protein LOC100805001 [Gl	0.929	0.838	0.871	1e-155

>gi|118481185|gb|ABK92544.1| unknown [Populus trichocarpa]

 Score =  572 bits (1473), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 282/315 (89%), Positives = 299/315 (94%), Gaps = 4/315 (1%)

Query: 1   MWGIIRQKVAAGGGSPVA---RIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKV 57
           M+GI+RQK++AGG   +A   RIRP VS  R YSSA K++ VREALNSALDEEMSADPKV
Sbjct: 1   MFGIVRQKISAGGSPLLAFGQRIRPAVSAWRGYSSAAKEITVREALNSALDEEMSADPKV 60

Query: 58  FLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTF 117
           FLMGEEVGEYQGAYKISKGLL+KYGPERVLDTPITEAGFTGIGVGAAY+GLKPV+EFMTF
Sbjct: 61  FLMGEEVGEYQGAYKISKGLLDKYGPERVLDTPITEAGFTGIGVGAAYHGLKPVIEFMTF 120

Query: 118 NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLK 177
           NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYA+WYAS PGLK
Sbjct: 121 NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYASWYASCPGLK 180

Query: 178 VLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIERE 237
           VL+PYSSEDARGLLKAAIRDPDPVVFLENELLYGE+FPVSAEVLDSSFC+PIGKAKIERE
Sbjct: 181 VLAPYSSEDARGLLKAAIRDPDPVVFLENELLYGETFPVSAEVLDSSFCVPIGKAKIERE 240

Query: 238 GKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVE 297
           GKDVTITAFSK+VG +LKAAEILAKEGI+AEVINLRSIRPLDR TINASVRKTNRLVTVE
Sbjct: 241 GKDVTITAFSKMVGYALKAAEILAKEGINAEVINLRSIRPLDRDTINASVRKTNRLVTVE 300

Query: 298 EGFPQHGVGAEIWCA 312
           EGFPQHGVGAEI CA
Sbjct: 301 EGFPQHGVGAEI-CA 314

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053535|ref|XP_002297861.1| predicted protein [Populus trichocarpa] gi|222845119|gb|EEE82666.1| predicted protein [Populus trichocarpa]

 Score =  565 bits (1456), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 281/312 (90%), Positives = 292/312 (93%), Gaps = 7/312 (2%)

Query: 1   MWGIIRQKVAAGGGSPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLM 60
           M GIIRQK          RIRP VS  R YSSA K+M VREALNSALDEEMSADPKVFLM
Sbjct: 1   MLGIIRQKAFG------QRIRPAVSAWRGYSSAAKEMTVREALNSALDEEMSADPKVFLM 54

Query: 61  GEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFS 120
           GEEVGEYQGAYKISKGLL+KYGPERVLDTPITEAGFTGIGVGAAY+GLKPV+EFMTFNFS
Sbjct: 55  GEEVGEYQGAYKISKGLLDKYGPERVLDTPITEAGFTGIGVGAAYHGLKPVIEFMTFNFS 114

Query: 121 MQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLS 180
           MQAIDHIINSAAKSNYMS+GQISVPIVFRGPNGAAAGVGAQHSHCYAAWYAS PGLKVL+
Sbjct: 115 MQAIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASCPGLKVLA 174

Query: 181 PYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKD 240
           PYSSEDARGLLKAAIRDPDPVVFLENELLYGE+FPVSAEVLDSSFCLPIGKAKIE+EGKD
Sbjct: 175 PYSSEDARGLLKAAIRDPDPVVFLENELLYGETFPVSAEVLDSSFCLPIGKAKIEKEGKD 234

Query: 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGF 300
           VTITAFSK+VG +LKAAEILAKEGISAEVINLRSIRPLDR+TINASVRKTNRLVTVEEGF
Sbjct: 235 VTITAFSKMVGYALKAAEILAKEGISAEVINLRSIRPLDRNTINASVRKTNRLVTVEEGF 294

Query: 301 PQHGVGAEIWCA 312
           PQHGVGAEI CA
Sbjct: 295 PQHGVGAEI-CA 305

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088722|emb|CBI38172.3| unnamed protein product [Vitis vinifera]

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 277/312 (88%), Positives = 290/312 (92%), Gaps = 3/312 (0%)

Query: 1   MWGIIRQKVAAGGGSPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLM 60
           M GI+ +KV    G  + RIRP V  LRNYSSA KQM VR+ALNSALDEEMSADPKVFLM
Sbjct: 63  MLGIVSRKVL---GQSLGRIRPAVWALRNYSSAEKQMTVRDALNSALDEEMSADPKVFLM 119

Query: 61  GEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFS 120
           GEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFS
Sbjct: 120 GEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFS 179

Query: 121 MQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLS 180
           MQAIDHIINSAAKSNYMS+GQISVPIVFRGPNGAAAGVGAQHS CYAAWY S PGLKVLS
Sbjct: 180 MQAIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYGSCPGLKVLS 239

Query: 181 PYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKD 240
           PYSSEDARGLLKAAIRDPDPV+FLENELLYGESFP+SAEVLDSSFCLPIGKAKIEREG+D
Sbjct: 240 PYSSEDARGLLKAAIRDPDPVIFLENELLYGESFPISAEVLDSSFCLPIGKAKIEREGRD 299

Query: 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGF 300
           VTITAFSK+VG +LKAA+ILAK+GISAE+INLRSIRPLD  TINASVRKTNRLVTVEEGF
Sbjct: 300 VTITAFSKMVGFALKAADILAKDGISAEIINLRSIRPLDTPTINASVRKTNRLVTVEEGF 359

Query: 301 PQHGVGAEIWCA 312
           PQHGVGAEI  A
Sbjct: 360 PQHGVGAEICMA 371

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425166|ref|XP_002264210.1| PREDICTED: pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like isoform 1 [Vitis vinifera] gi|359473798|ref|XP_003631360.1| PREDICTED: pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like isoform 2 [Vitis vinifera]

 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 277/312 (88%), Positives = 290/312 (92%), Gaps = 3/312 (0%)

Query: 1   MWGIIRQKVAAGGGSPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLM 60
           M GI+ +KV    G  + RIRP V  LRNYSSA KQM VR+ALNSALDEEMSADPKVFLM
Sbjct: 1   MLGIVSRKVL---GQSLGRIRPAVWALRNYSSAEKQMTVRDALNSALDEEMSADPKVFLM 57

Query: 61  GEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFS 120
           GEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFS
Sbjct: 58  GEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFS 117

Query: 121 MQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLS 180
           MQAIDHIINSAAKSNYMS+GQISVPIVFRGPNGAAAGVGAQHS CYAAWY S PGLKVLS
Sbjct: 118 MQAIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYGSCPGLKVLS 177

Query: 181 PYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKD 240
           PYSSEDARGLLKAAIRDPDPV+FLENELLYGESFP+SAEVLDSSFCLPIGKAKIEREG+D
Sbjct: 178 PYSSEDARGLLKAAIRDPDPVIFLENELLYGESFPISAEVLDSSFCLPIGKAKIEREGRD 237

Query: 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGF 300
           VTITAFSK+VG +LKAA+ILAK+GISAE+INLRSIRPLD  TINASVRKTNRLVTVEEGF
Sbjct: 238 VTITAFSKMVGFALKAADILAKDGISAEIINLRSIRPLDTPTINASVRKTNRLVTVEEGF 297

Query: 301 PQHGVGAEIWCA 312
           PQHGVGAEI  A
Sbjct: 298 PQHGVGAEICMA 309

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445580|ref|XP_004140550.1| PREDICTED: pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [Cucumis sativus]

 Score =  558 bits (1437), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 273/311 (87%), Positives = 289/311 (92%), Gaps = 2/311 (0%)

Query: 1   MWGIIRQKVAAGGGS--PVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVF 58
           MWGI+RQKV AG  S   +  +RP  S  R YSSA K+M VR+ALNSALDEEMS DPKVF
Sbjct: 1   MWGIVRQKVGAGASSIPALQSLRPAASASRYYSSAAKEMTVRDALNSALDEEMSVDPKVF 60

Query: 59  LMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFN 118
           LMGEEVGEYQGAYKI+KGLLEKYGPERVLDTPITEAGFTGIGVGAAY+GLKPVVEFMTFN
Sbjct: 61  LMGEEVGEYQGAYKITKGLLEKYGPERVLDTPITEAGFTGIGVGAAYHGLKPVVEFMTFN 120

Query: 119 FSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKV 178
           FSMQAIDHIINSAAK+NYMS+GQISVPIVFRGPNGAAAGVGAQHS CYAAWY S PGLKV
Sbjct: 121 FSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYGSCPGLKV 180

Query: 179 LSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREG 238
           L+PYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSF  PIGKAKIEREG
Sbjct: 181 LAPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFTAPIGKAKIEREG 240

Query: 239 KDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEE 298
           KDVTITAFSK+VG +LKAAE+L+KEGISAEVINLRSIRPLDR+TINASVRKT+RLVTVEE
Sbjct: 241 KDVTITAFSKMVGYALKAAEVLSKEGISAEVINLRSIRPLDRATINASVRKTSRLVTVEE 300

Query: 299 GFPQHGVGAEI 309
           GFPQHGVGAEI
Sbjct: 301 GFPQHGVGAEI 311

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449519858|ref|XP_004166951.1| PREDICTED: LOW QUALITY PROTEIN: pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [Cucumis sativus]

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 273/311 (87%), Positives = 289/311 (92%), Gaps = 2/311 (0%)

Query: 1   MWGIIRQKVAAGGGS--PVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVF 58
           MWGI+RQKV AG  S   +  +RP  S  R YSSA K+M VR+ALNSALDEEMSADPK F
Sbjct: 1   MWGIVRQKVGAGASSIPALQSLRPAASASRYYSSAAKEMTVRDALNSALDEEMSADPKXF 60

Query: 59  LMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFN 118
           LMGEEVGEYQGAYKI+KGLLEKYGPERVLDTPITEAGFTGIGVGAAY+GLKPVVEFMTFN
Sbjct: 61  LMGEEVGEYQGAYKITKGLLEKYGPERVLDTPITEAGFTGIGVGAAYHGLKPVVEFMTFN 120

Query: 119 FSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKV 178
           FSMQAIDHIINSAAK+NYMS+GQISVPIVFRGPNGAAAGVGAQHS CYAAWY S PGLKV
Sbjct: 121 FSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYGSCPGLKV 180

Query: 179 LSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREG 238
           L+PYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSF  PIGKAKIEREG
Sbjct: 181 LAPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFTAPIGKAKIEREG 240

Query: 239 KDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEE 298
           KDVTITAFSK+VG +LKAAE+L+KEGISAEVINLRSIRPLDR+TINASVRKT+RLVTVEE
Sbjct: 241 KDVTITAFSKMVGYALKAAEVLSKEGISAEVINLRSIRPLDRATINASVRKTSRLVTVEE 300

Query: 299 GFPQHGVGAEI 309
           GFPQHGVGAEI
Sbjct: 301 GFPQHGVGAEI 311

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543140|ref|XP_002512633.1| pyruvate dehydrogenase, putative [Ricinus communis] gi|223548594|gb|EEF50085.1| pyruvate dehydrogenase, putative [Ricinus communis]

 Score =  555 bits (1430), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 277/313 (88%), Positives = 290/313 (92%), Gaps = 5/313 (1%)

Query: 1   MWGIIRQKVAAGGGSPVARIRPVV-SNLRNYSSAVKQMMVREALNSALDEEMSADPKVFL 59
           M GII+QK     G  + RIRP V S  R YSSA K+M VREALNSALDEEMSADPKVFL
Sbjct: 1   MLGIIKQKAL---GKSLQRIRPAVASAWRAYSSAAKEMTVREALNSALDEEMSADPKVFL 57

Query: 60  MGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNF 119
           MGEEVGEYQGAYKI+KGLL+KYGPERVLDTPITEAGFTGIGVGAAY+GLKPVVEFMTFNF
Sbjct: 58  MGEEVGEYQGAYKITKGLLDKYGPERVLDTPITEAGFTGIGVGAAYHGLKPVVEFMTFNF 117

Query: 120 SMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVL 179
           SMQAIDHIINSAAKS YMS+GQ+SVPIVFRGPNGAAAGVGAQHS CYA+WYAS PGLKVL
Sbjct: 118 SMQAIDHIINSAAKSTYMSAGQLSVPIVFRGPNGAAAGVGAQHSQCYASWYASCPGLKVL 177

Query: 180 SPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGK 239
           +PYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFC PIGKAKIEREGK
Sbjct: 178 APYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCTPIGKAKIEREGK 237

Query: 240 DVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEG 299
           DVTITAFSK+VG +LKAAE+LAKEGISAEVINLRSIRPLDR TINASVRKTNRLVTVEEG
Sbjct: 238 DVTITAFSKMVGYALKAAELLAKEGISAEVINLRSIRPLDRPTINASVRKTNRLVTVEEG 297

Query: 300 FPQHGVGAEIWCA 312
           FPQHGVGAEI CA
Sbjct: 298 FPQHGVGAEI-CA 309

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075515|ref|XP_002304661.1| predicted protein [Populus trichocarpa] gi|222842093|gb|EEE79640.1| predicted protein [Populus trichocarpa]

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 271/293 (92%), Positives = 283/293 (96%), Gaps = 1/293 (0%)

Query: 20  IRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLE 79
           IRP VS  R YSSA K++ VREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLL+
Sbjct: 1   IRPAVSAWRGYSSAAKEITVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLD 60

Query: 80  KYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSS 139
           KYGPERVLDTPITEAGFTGIGVGAAY+GLKPV+EFMTFNFSMQAIDHIINSAAKSNYMSS
Sbjct: 61  KYGPERVLDTPITEAGFTGIGVGAAYHGLKPVIEFMTFNFSMQAIDHIINSAAKSNYMSS 120

Query: 140 GQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPD 199
           GQISVPIVFRGPNGAAAGVGAQHSHCYA+WYAS PGLKVL+PYSSEDARGLLKAAIRDPD
Sbjct: 121 GQISVPIVFRGPNGAAAGVGAQHSHCYASWYASCPGLKVLAPYSSEDARGLLKAAIRDPD 180

Query: 200 PVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEI 259
           PVVFLENELLYGE+FPVSAEVLDSSFC+PIGKAKIEREGKDVTITAFSK+VG +LKAAEI
Sbjct: 181 PVVFLENELLYGETFPVSAEVLDSSFCVPIGKAKIEREGKDVTITAFSKMVGYALKAAEI 240

Query: 260 LAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCA 312
           LAKEGI+AEVINLRSIRPLDR TINASVRKTNRLVTVEEGFPQHGVGAEI CA
Sbjct: 241 LAKEGINAEVINLRSIRPLDRDTINASVRKTNRLVTVEEGFPQHGVGAEI-CA 292

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357501349|ref|XP_003620963.1| Pyruvate dehydrogenase E1 component subunit beta [Medicago truncatula] gi|217073128|gb|ACJ84923.1| unknown [Medicago truncatula] gi|355495978|gb|AES77181.1| Pyruvate dehydrogenase E1 component subunit beta [Medicago truncatula] gi|388521205|gb|AFK48664.1| unknown [Medicago truncatula]

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 274/312 (87%), Positives = 286/312 (91%), Gaps = 10/312 (3%)

Query: 1   MWGIIRQKVAAGGGSPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLM 60
           M G+IR K           +RP  S  R+ SS+ KQM VR+ALNSALDEEMSADPKVFLM
Sbjct: 1   MLGVIRNK---------NLLRPSFSAFRHLSSSAKQMTVRDALNSALDEEMSADPKVFLM 51

Query: 61  GEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFS 120
           GEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFS
Sbjct: 52  GEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFS 111

Query: 121 MQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLS 180
           MQAIDHIINSAAKSNYMS+GQI+VPIVFRGPNGAAAGVGAQHSHCYA+WY S PGLKVL+
Sbjct: 112 MQAIDHIINSAAKSNYMSAGQINVPIVFRGPNGAAAGVGAQHSHCYASWYGSCPGLKVLA 171

Query: 181 PYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKD 240
           PYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKD
Sbjct: 172 PYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKD 231

Query: 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGF 300
           VTITAFSK+VG +LKAAE L KEGISAEVINLRSIRPLDR+TINASVRKTNRLVTVEEGF
Sbjct: 232 VTITAFSKMVGFALKAAETLEKEGISAEVINLRSIRPLDRATINASVRKTNRLVTVEEGF 291

Query: 301 PQHGVGAEIWCA 312
           PQHGVGAEI CA
Sbjct: 292 PQHGVGAEI-CA 302

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807782|ref|NP_001242433.1| uncharacterized protein LOC100805001 [Glycine max] gi|255635914|gb|ACU18304.1| unknown [Glycine max]

 Score =  553 bits (1425), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 272/312 (87%), Positives = 285/312 (91%), Gaps = 10/312 (3%)

Query: 1   MWGIIRQKVAAGGGSPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLM 60
           M G+IR K           IRP  S +R+ SSA K++ VREALNSALDEEMSADPKVFLM
Sbjct: 1   MLGVIRHK----------SIRPAFSAIRHLSSAAKEITVREALNSALDEEMSADPKVFLM 50

Query: 61  GEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFS 120
           GEEVGEYQGAYKISKGLL+KYGPERVLDTPITEAGFTGIGVGAAYYGL+PVVEFMTFNFS
Sbjct: 51  GEEVGEYQGAYKISKGLLDKYGPERVLDTPITEAGFTGIGVGAAYYGLRPVVEFMTFNFS 110

Query: 121 MQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLS 180
           MQAIDHIINSAAKSNYMS+GQISVPIVFRGPNGAAAGVGAQHS CYA+WY S PGLKVLS
Sbjct: 111 MQAIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYASWYGSCPGLKVLS 170

Query: 181 PYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKD 240
           PYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKD
Sbjct: 171 PYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKD 230

Query: 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGF 300
           VTITA+SK+VG +LKAAE LAKEGISAEVINLRSIRPLDRSTIN SVRKTNRLVTVEEGF
Sbjct: 231 VTITAYSKMVGFALKAAETLAKEGISAEVINLRSIRPLDRSTINTSVRKTNRLVTVEEGF 290

Query: 301 PQHGVGAEIWCA 312
           PQHGVGAEI  +
Sbjct: 291 PQHGVGAEICTS 302

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	325
TAIR|locus:2152745	363	MAB1 "MACCI-BOU" [Arabidopsis	0.953	0.853	0.839	2.9e-135
FB|FBgn0039635	365	CG11876 [Drosophila melanogast	0.858	0.764	0.721	9.5e-105
DICTYBASE|DDB_G0276417	356	pdhB "pyruvate dehydrogenase E	0.907	0.828	0.637	3.1e-99
UNIPROTKB|F1N823	360	PDHB "Uncharacterized protein"	0.935	0.844	0.644	6.4e-99
ZFIN|ZDB-GENE-040426-2173	359	pdhb "pyruvate dehydrogenase (	0.852	0.771	0.678	1.7e-98
POMBASE|SPBC30D10.13c	366	pdb1 "pyruvate dehydrogenase e	0.858	0.762	0.664	1.2e-97
CGD|CAL0003677	379	PDB1 [Candida albicans (taxid:	0.864	0.741	0.671	2e-97
SGD|S000000425	366	PDB1 "E1 beta subunit of the p	0.904	0.803	0.648	2e-97
UNIPROTKB|Q2GHV6	332	ECH_0149 "Putative pyruvate de	0.849	0.831	0.652	1.2e-95
TIGR_CMR|ECH_0149	332	ECH_0149 "putative pyruvate de	0.849	0.831	0.652	1.2e-95

TAIR|locus:2152745 MAB1 "MACCI-BOU" [Arabidopsis thaliana (taxid:3702)]

 Score = 1325 (471.5 bits), Expect = 2.9e-135, P = 2.9e-135
 Identities = 262/312 (83%), Positives = 286/312 (91%)

Query:     1 MWGIIRQKVAAGGGSPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLM 60
             M GI+RQ+ A  G S + R R  + + R+Y++  K+M VR+ALNSA+DEEMSADPKVF+M
Sbjct:     1 MLGILRQR-AIDGASTLRRTRFALVSARSYAAGAKEMTVRDALNSAIDEEMSADPKVFVM 59

Query:    61 GEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFS 120
             GEEVG+YQGAYKI+KGLLEKYGPERV DTPITEAGFTGIGVGAAY GLKPVVEFMTFNFS
Sbjct:    60 GEEVGQYQGAYKITKGLLEKYGPERVYDTPITEAGFTGIGVGAAYAGLKPVVEFMTFNFS 119

Query:   121 MQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLS 180
             MQAIDHIINSAAKSNYMS+GQI+VPIVFRGPNGAAAGVGAQHS CYAAWYASVPGLKVL+
Sbjct:   120 MQAIDHIINSAAKSNYMSAGQINVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLA 179

Query:   181 PYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKD 240
             PYS+EDARGLLKAAIRDPDPVVFLENELLYGESFP+S E LDSSFCLPIGKAKIEREGKD
Sbjct:   180 PYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPISEEALDSSFCLPIGKAKIEREGKD 239

Query:   241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGF 300
             VTI  FSK+VG +LKAAE LA+EGISAEVINLRSIRPLDR+TINASVRKT+RLVTVEEGF
Sbjct:   240 VTIVTFSKMVGFALKAAEKLAEEGISAEVINLRSIRPLDRATINASVRKTSRLVTVEEGF 299

Query:   301 PQHGVGAEIWCA 312
             PQHGV AEI CA
Sbjct:   300 PQHGVCAEI-CA 310

GO:0003824 "catalytic activity" evidence=IEA

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008152 "metabolic process" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0048046 "apoplast" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0009060 "aerobic respiration" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009749 "response to glucose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0019722 "calcium-mediated signaling" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

FB|FBgn0039635 CG11876 [Drosophila melanogaster (taxid:7227)]

 Score = 1037 (370.1 bits), Expect = 9.5e-105, P = 9.5e-105
 Identities = 202/280 (72%), Positives = 236/280 (84%)

Query:    33 AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPIT 92
             A KQM VR+ALNSALD+E++ D +VF++GEEV +Y GAYK+S+GL +KYG +RV+DTPIT
Sbjct:    25 AAKQMTVRDALNSALDDELARDDRVFILGEEVAQYDGAYKVSRGLWKKYGDKRVIDTPIT 84

Query:    93 EAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN 152
             E GF GI VGAA  GL+PV EFMT+NFSMQAIDHIINSAAK+ YMS+G ++VPIVFRGPN
Sbjct:    85 EMGFAGIAVGAAMAGLRPVCEFMTWNFSMQAIDHIINSAAKTFYMSAGAVNVPIVFRGPN 144

Query:   153 GAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGE 212
             GAA+GV AQHS C+AAWYA  PGLKVLSPY +EDARGLLK+AIRDPDPVVFLENEL+YG 
Sbjct:   145 GAASGVAAQHSQCFAAWYAHCPGLKVLSPYDAEDARGLLKSAIRDPDPVVFLENELVYGT 204

Query:   213 SFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINL 272
             +FPV+  V D  F +PIGKAK+ R GKD+T+ A SK V  SL AA  LAK+GI AEVINL
Sbjct:   205 AFPVADNVADKDFLVPIGKAKVMRPGKDITLVAHSKAVETSLLAAAELAKKGIEAEVINL 264

Query:   273 RSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCA 312
             RSIRPLD +TI ASVRKT+ LVTVE G+PQHGVGAEI CA
Sbjct:   265 RSIRPLDTATIFASVRKTHHLVTVENGWPQHGVGAEI-CA 303

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=ISS

GO:0045254 "pyruvate dehydrogenase complex" evidence=ISS

GO:0006090 "pyruvate metabolic process" evidence=ISS

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005811 "lipid particle" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0031122 "cytoplasmic microtubule organization" evidence=IMP

DICTYBASE|DDB_G0276417 pdhB "pyruvate dehydrogenase E1 beta subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 985 (351.8 bits), Expect = 3.1e-99, P = 3.1e-99
 Identities = 190/298 (63%), Positives = 243/298 (81%)

Query:    15 SPVARIRP-VVSNLR--NYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY 71
             S + +I+P ++ N R    + A K++ VR+A+NSALDEE++ D KVF+MGEEV +Y GAY
Sbjct:     4 SILKKIQPSLLVNFRIITRTYATKEVTVRDAINSALDEELARDEKVFIMGEEVAQYNGAY 63

Query:    72 KISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSA 131
             KI+KGL +KYG +R++DTPITEAGF GIGVGAA  G +P++EFMTFNF+MQAIDHIINS+
Sbjct:    64 KITKGLFDKYGGDRIIDTPITEAGFAGIGVGAAMAGTRPIIEFMTFNFAMQAIDHIINSS 123

Query:   132 AKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLL 191
             AK++YMS G++  PIV+RGPNG    VGAQHS C+AAWY SVPGLKV++P+S+ D RGLL
Sbjct:   124 AKTHYMSGGKVFNPIVWRGPNGPPTAVGAQHSQCFAAWYGSVPGLKVVAPWSAADHRGLL 183

Query:   192 KAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVG 251
             K+AIRD +PVV+LE+ELLY   F +S +  D  + +PIGKAK+EREGKDVTI  FS+IV 
Sbjct:   184 KSAIRDDNPVVYLESELLYNYKFDLSDQEQDKEYLVPIGKAKVEREGKDVTIVGFSRIVS 243

Query:   252 LSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 309
               ++AAEILAKEGISAEVINLR+IRP+D  TI  S++KTN+LVTVEEG+ Q G+GAEI
Sbjct:   244 NCMEAAEILAKEGISAEVINLRTIRPIDAETIVNSLKKTNKLVTVEEGWAQSGIGAEI 301

GO:0008152 "metabolic process" evidence=IEA

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=IEA;ISS

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=IEA;ISS

GO:0003824 "catalytic activity" evidence=IEA

GO:0005967 "mitochondrial pyruvate dehydrogenase complex" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0006096 "glycolysis" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|F1N823 PDHB "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 982 (350.7 bits), Expect = 6.4e-99, P = 6.4e-99
 Identities = 199/309 (64%), Positives = 237/309 (76%)

Query:     8 KVAAGGGS----PVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEE 63
             K+AA G      P  R+ P    LR  + A  Q+ VR+ALN ALDEE+  D +VFL+GEE
Sbjct:     1 KMAAAGALRLLVPRGRLLPPRRGLRLSAPAAIQVTVRDALNQALDEELERDERVFLLGEE 60

Query:    64 VGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQA 123
             V +Y GAYKIS+GL +KYG +R++DTPI+E GFTGI VGAA  GL+PV EFMTFNFSMQA
Sbjct:    61 VAQYDGAYKISRGLWKKYGDKRIIDTPISEMGFTGIAVGAAMAGLRPVCEFMTFNFSMQA 120

Query:   124 IDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYS 183
             ID +INSAAK+ YMS+G I VPIVFRGPNGA+AGV AQHS C+AAWY   PGLKV+SP+S
Sbjct:   121 IDQVINSAAKTCYMSAGTIPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWS 180

Query:   184 SEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTI 243
             SEDA+GLLKA+IRD +PVV LENELLYG  F +S +     F +PIGKAKIEREG  VT+
Sbjct:   181 SEDAKGLLKASIRDDNPVVMLENELLYGVPFEMSEQAQSKDFVVPIGKAKIEREGTHVTL 240

Query:   244 TAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQH 303
              A S+ VG  L+AA ILAKEG+  EVINLR+IRP+D  T+ ASV KTN LVTVE G+PQ 
Sbjct:   241 VAHSRPVGHCLEAASILAKEGVECEVINLRTIRPMDIETVEASVAKTNHLVTVEGGWPQF 300

Query:   304 GVGAEIWCA 312
             GVG+EI CA
Sbjct:   301 GVGSEI-CA 308

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=IEA

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

ZFIN|ZDB-GENE-040426-2173 pdhb "pyruvate dehydrogenase (lipoamide) beta" [Danio rerio (taxid:7955)]

 Score = 978 (349.3 bits), Expect = 1.7e-98, P = 1.7e-98
 Identities = 188/277 (67%), Positives = 224/277 (80%)

Query:    33 AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPIT 92
             A  Q+ VR+ALN A+DEE+  D +VFL+GEEV +Y GAYK+S+GL +KYG +R++DTPIT
Sbjct:    29 AAVQVTVRDALNQAMDEELERDERVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPIT 88

Query:    93 EAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN 152
             E GF GI VGAA  GL+P+ EFMTFNFSMQAID +INSAAK+ YMS+G  +VPIVFRGPN
Sbjct:    89 EMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSAGLQAVPIVFRGPN 148

Query:   153 GAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGE 212
             GA+AGV AQHS C+AAWY   PGLKVLSP++SEDARGLLKAAIRD +PVVFLENEL+YG 
Sbjct:   149 GASAGVAAQHSQCFAAWYGHCPGLKVLSPWNSEDARGLLKAAIRDDNPVVFLENELMYGV 208

Query:   213 SFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINL 272
              F +S EV    F +PIGKAKIER+G  +T+ + S++VGL L AA +LAKEGI  EVINL
Sbjct:   209 PFEMSEEVQSKDFVIPIGKAKIERQGNHITLVSHSRMVGLCLDAAAVLAKEGIECEVINL 268

Query:   273 RSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 309
             RSIRPLD  TI  S+ KTN LVTVE G+PQ GVGAEI
Sbjct:   269 RSIRPLDADTIETSITKTNHLVTVEGGWPQFGVGAEI 305

GO:0003824 "catalytic activity" evidence=IEA

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=IEA

GO:0004738 "pyruvate dehydrogenase activity" evidence=IMP

POMBASE|SPBC30D10.13c pdb1 "pyruvate dehydrogenase e1 component beta subunit Pdb1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 970 (346.5 bits), Expect = 1.2e-97, P = 1.2e-97
 Identities = 186/280 (66%), Positives = 230/280 (82%)

Query:    31 SSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTP 90
             S+ VK+M VR+ALNSA++EEM  D +VFL+GEEV +Y GAYKIS+GLL+K+GP+RV+DTP
Sbjct:    32 SNGVKEMTVRDALNSAMEEEMKRDDRVFLIGEEVAQYNGAYKISRGLLDKFGPKRVIDTP 91

Query:    91 ITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG 150
             ITE GFTG+  GAA+ GL+P+ EFMTFNFSMQAIDHI+NSAA++ YMS G  + PIVFRG
Sbjct:    92 ITEMGFTGLATGAAFAGLRPICEFMTFNFSMQAIDHIVNSAARTLYMSGGIQACPIVFRG 151

Query:   151 PNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLY 210
             PNG AA V AQHS  +A WY S+PGLKV+SPYS+EDARGLLKAAIRDP+PVV LENE+LY
Sbjct:   152 PNGPAAAVAAQHSQHFAPWYGSIPGLKVVSPYSAEDARGLLKAAIRDPNPVVVLENEILY 211

Query:   211 GESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEIL-AKEGISAEV 269
             G++FP+S E L   F LP G AK+ER GKD+TI   S  V  +L+AA+ L A  G+ AEV
Sbjct:   212 GKTFPISKEALSEDFVLPFGLAKVERPGKDITIVGESISVVTALEAADKLKADYGVEAEV 271

Query:   270 INLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 309
             INLRSIRPLD +TI ASV+KTNR+VTV++ + QHG+G+EI
Sbjct:   272 INLRSIRPLDINTIAASVKKTNRIVTVDQAYSQHGIGSEI 311

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=EXP;ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0005967 "mitochondrial pyruvate dehydrogenase complex" evidence=ISS

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=EXP;ISS;IMP

GO:0006096 "glycolysis" evidence=IEA

GO:0006526 "arginine biosynthetic process" evidence=IMP

GO:0006542 "glutamine biosynthetic process" evidence=IMP

CGD|CAL0003677 PDB1 [Candida albicans (taxid:5476)]

 Score = 968 (345.8 bits), Expect = 2.0e-97, P = 2.0e-97
 Identities = 190/283 (67%), Positives = 228/283 (80%)

Query:    31 SSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTP 90
             S+ VK++ VR+ALN AL EE+  D  VFLMGEEV +Y GAYK+S+GLL+K+G +RV+DTP
Sbjct:    46 STPVKEITVRDALNQALSEELDRDEDVFLMGEEVAQYNGAYKVSRGLLDKFGEKRVIDTP 105

Query:    91 ITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG 150
             ITE GFTG+ VGAA +GLKPV+EFMT+NF+MQ IDHI+NSAAK+ YMS G+    I FRG
Sbjct:   106 ITEMGFTGLAVGAALHGLKPVLEFMTWNFAMQGIDHILNSAAKTLYMSGGKQPCNITFRG 165

Query:   151 PNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLY 210
             PNGAAAGV AQHS CYAAWY S+PGLKVLSPYS+ED +GLLKAAIRDP+PVVFLENE+ Y
Sbjct:   166 PNGAAAGVAAQHSQCYAAWYGSIPGLKVLSPYSAEDYKGLLKAAIRDPNPVVFLENEIAY 225

Query:   211 GESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE-GISAEV 269
             GE+F VS E     F LPIGKAKIE+EG D+TI   S+ +  +++AAEIL K+ GI AEV
Sbjct:   226 GETFKVSEEFSSPDFILPIGKAKIEKEGTDLTIVGHSRALKFAVEAAEILEKDFGIKAEV 285

Query:   270 INLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCA 312
             +NLRSI+PLD   I  SV+KTN LVTVE GFP  GVG+EI CA
Sbjct:   286 LNLRSIKPLDVPAIVDSVKKTNHLVTVENGFPGFGVGSEI-CA 327

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005967 "mitochondrial pyruvate dehydrogenase complex" evidence=IEA

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=IEA

SGD|S000000425 PDB1 "E1 beta subunit of the pyruvate dehydrogenase (PDH) complex" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 968 (345.8 bits), Expect = 2.0e-97, P = 2.0e-97
 Identities = 192/296 (64%), Positives = 231/296 (78%)

Query:    15 SPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKIS 74
             +P + +RP  +      S+ K M VREALNSA+ EE+  D  VFL+GEEV +Y GAYK+S
Sbjct:    17 APTSFVRPSAAAAALRFSSTKTMTVREALNSAMAEELDRDDDVFLIGEEVAQYNGAYKVS 76

Query:    75 KGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKS 134
             KGLL+++G  RV+DTPITE GFTG+ VGAA  GLKP+VEFM+FNFSMQAIDH++NSAAK+
Sbjct:    77 KGLLDRFGERRVVDTPITEYGFTGLAVGAALKGLKPIVEFMSFNFSMQAIDHVVNSAAKT 136

Query:   135 NYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAA 194
             +YMS G     +VFRGPNGAA GVGAQHS  ++ WY S+PGLKVL PYS+EDARGLLKAA
Sbjct:   137 HYMSGGTQKCQMVFRGPNGAAVGVGAQHSQDFSPWYGSIPGLKVLVPYSAEDARGLLKAA 196

Query:   195 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSL 254
             IRDP+PVVFLENELLYGESF +S E L   F LP  KAKIEREG D++I  +++ V  SL
Sbjct:   197 IRDPNPVVFLENELLYGESFEISEEALSPEFTLPY-KAKIEREGTDISIVTYTRNVQFSL 255

Query:   255 KAAEILAKE-GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 309
             +AAEIL K+ G+SAEVINLRSIRPLD   I  +V+KTN L+TVE  FP  GVGAEI
Sbjct:   256 EAAEILQKKYGVSAEVINLRSIRPLDTEAIIKTVKKTNHLITVESTFPSFGVGAEI 311

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=IEA;IMP

GO:0005967 "mitochondrial pyruvate dehydrogenase complex" evidence=IDA

GO:0005739 "mitochondrion" evidence=IEA;IMP;IDA

GO:0042645 "mitochondrial nucleoid" evidence=IDA

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0006096 "glycolysis" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=IEA;IDA

UNIPROTKB|Q2GHV6 ECH_0149 "Putative pyruvate dehydrogenase complex, E1 component, beta subunit" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 951 (339.8 bits), Expect = 1.2e-95, P = 1.2e-95
 Identities = 180/276 (65%), Positives = 227/276 (82%)

Query:    34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITE 93
             ++ + VREAL  A+ EEM  D  V +MGEEVGEYQGAYK+++GLLE++GP+RV+DTPITE
Sbjct:     1 MRTLTVREALCEAIREEMERDHTVLIMGEEVGEYQGAYKVTQGLLEQFGPDRVIDTPITE 60

Query:    94 AGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNG 153
              GF GIGVGAA+ GLKP+VEFMTFNF+MQAID IINSAAK++YMS GQ++ PIVFRGPNG
Sbjct:    61 HGFAGIGVGAAFAGLKPIVEFMTFNFAMQAIDQIINSAAKTSYMSGGQLNCPIVFRGPNG 120

Query:   154 AAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGES 213
             AAA VGAQHS CYA+WYA +PGLKV+SPY + D +GLLKAAIRD +PVVFLENE+ YG  
Sbjct:   121 AAARVGAQHSQCYASWYAHIPGLKVVSPYFAADCKGLLKAAIRDLNPVVFLENEIAYGHK 180

Query:   214 FPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLR 273
               +  EV  S +   IGKA I +EG D+TITAFS  V  +L+AAE+LAKEGI+AEVI+LR
Sbjct:   181 HEIPNEVSTSDYITEIGKAAIVKEGTDITITAFSLQVKFALEAAELLAKEGINAEVIDLR 240

Query:   274 SIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 309
             ++RPLD  TI  S++KTN+++++EEG+P  G+G+EI
Sbjct:   241 TLRPLDTETILRSIKKTNKIISIEEGWPYSGIGSEI 276

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=ISS

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=ISS

GO:0045250 "cytosolic pyruvate dehydrogenase complex" evidence=ISS

TIGR_CMR|ECH_0149 ECH_0149 "putative pyruvate dehydrogenase complex, E1 component, beta subunit" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 951 (339.8 bits), Expect = 1.2e-95, P = 1.2e-95
 Identities = 180/276 (65%), Positives = 227/276 (82%)

Query:    34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITE 93
             ++ + VREAL  A+ EEM  D  V +MGEEVGEYQGAYK+++GLLE++GP+RV+DTPITE
Sbjct:     1 MRTLTVREALCEAIREEMERDHTVLIMGEEVGEYQGAYKVTQGLLEQFGPDRVIDTPITE 60

Query:    94 AGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNG 153
              GF GIGVGAA+ GLKP+VEFMTFNF+MQAID IINSAAK++YMS GQ++ PIVFRGPNG
Sbjct:    61 HGFAGIGVGAAFAGLKPIVEFMTFNFAMQAIDQIINSAAKTSYMSGGQLNCPIVFRGPNG 120

Query:   154 AAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGES 213
             AAA VGAQHS CYA+WYA +PGLKV+SPY + D +GLLKAAIRD +PVVFLENE+ YG  
Sbjct:   121 AAARVGAQHSQCYASWYAHIPGLKVVSPYFAADCKGLLKAAIRDLNPVVFLENEIAYGHK 180

Query:   214 FPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLR 273
               +  EV  S +   IGKA I +EG D+TITAFS  V  +L+AAE+LAKEGI+AEVI+LR
Sbjct:   181 HEIPNEVSTSDYITEIGKAAIVKEGTDITITAFSLQVKFALEAAELLAKEGINAEVIDLR 240

Query:   274 SIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 309
             ++RPLD  TI  S++KTN+++++EEG+P  G+G+EI
Sbjct:   241 TLRPLDTETILRSIKKTNKIISIEEGWPYSGIGSEI 276

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=ISS

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=ISS

GO:0045250 "cytosolic pyruvate dehydrogenase complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P37941	ODBB_BACSU	1, ., 2, ., 4, ., 4	0.4200	0.8184	0.8134	yes	no
P11966	ODPB_BOVIN	1, ., 2, ., 4, ., 1	0.6571	0.8584	0.7771	yes	no
Q5SLR3	ODBB_THET8	1, ., 2, ., 4, ., 4	0.4440	0.8123	0.8148	yes	no
Q72GU2	ODBB_THET2	1, ., 2, ., 4, ., 4	0.4402	0.8123	0.8148	yes	no
P35488	ODPB_ACHLA	1, ., 2, ., 4, ., 1	0.4014	0.8338	0.8287	yes	no
P32473	ODPB_YEAST	1, ., 2, ., 4, ., 1	0.6486	0.9046	0.8032	yes	no
Q8CPN2	ODPB_STAES	1, ., 2, ., 4, ., 1	0.3838	0.8646	0.8646	yes	no
Q0J0H4	ODPB2_ORYSJ	1, ., 2, ., 4, ., 1	0.8222	0.9507	0.8218	no	no
Q6GAC0	ODPB_STAAS	1, ., 2, ., 4, ., 1	0.3908	0.8646	0.8646	yes	no
Q5HGZ0	ODPB_STAAC	1, ., 2, ., 4, ., 1	0.3943	0.8646	0.8646	yes	no
P11177	ODPB_HUMAN	1, ., 2, ., 4, ., 1	0.6321	0.8584	0.7771	yes	no
Q9R9N4	ODPB_RHIME	1, ., 2, ., 4, ., 1	0.6276	0.8584	0.6065	yes	no
P52904	ODPB_PEA	1, ., 2, ., 4, ., 1	0.8493	0.9261	0.8384	N/A	no
O44451	ODPB_CAEEL	1, ., 2, ., 4, ., 1	0.6630	0.8584	0.7926	yes	no
Q86HX0	ODPB_DICDI	1, ., 2, ., 4, ., 1	0.6375	0.9076	0.8286	yes	no
Q6GHZ1	ODPB_STAAR	1, ., 2, ., 4, ., 1	0.3908	0.8646	0.8646	yes	no
Q09171	ODPB_SCHPO	1, ., 2, ., 4, ., 1	0.6642	0.8584	0.7622	yes	no
Q38799	ODPB1_ARATH	1, ., 2, ., 4, ., 1	0.8397	0.9538	0.8539	yes	no
Q5RE79	ODPB_PONAB	1, ., 2, ., 4, ., 1	0.6321	0.8584	0.7771	yes	no
Q9D051	ODPB_MOUSE	1, ., 2, ., 4, ., 1	0.6464	0.8584	0.7771	yes	no
Q1RJX3	ODPB_RICBR	1, ., 2, ., 4, ., 1	0.6167	0.8307	0.8307	yes	no
Q68XA8	ODPB_RICTY	1, ., 2, ., 4, ., 1	0.6021	0.8307	0.8282	yes	no
P99063	ODPB_STAAN	1, ., 2, ., 4, ., 1	0.3908	0.8646	0.8646	yes	no
Q4UKQ7	ODPB_RICFE	1, ., 2, ., 4, ., 1	0.6277	0.8307	0.8282	yes	no
P49432	ODPB_RAT	1, ., 2, ., 4, ., 1	0.6428	0.8584	0.7771	yes	no
Q92IS2	ODPB_RICCN	1, ., 2, ., 4, ., 1	0.6167	0.8307	0.8282	yes	no
P0A0A2	ODPB_STAAW	1, ., 2, ., 4, ., 1	0.3908	0.8646	0.8646	yes	no
Q9ZDR3	ODPB_RICPR	1, ., 2, ., 4, ., 1	0.6021	0.8307	0.8282	yes	no
P0A0A3	ODPB_STAAU	1, ., 2, ., 4, ., 1	0.3908	0.8646	0.8646	yes	no
Q6Z1G7	ODPB1_ORYSJ	1, ., 2, ., 4, ., 1	0.9236	0.8461	0.7352	yes	no
P0A0A1	ODPB_STAAM	1, ., 2, ., 4, ., 1	0.3908	0.8646	0.8646	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.2.4	0.983
4th Layer	1.2.4.1	0.979

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_LG_I0194	pyruvate dehydrogenase (acetyl-transferring) (EC-1.2.4.1) (358 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pg.C_LG_II001653	SubName- Full=Putative uncharacterized protein; (355 aa)	•	•	•		•	•	•		0.992
	gw1.X.5451.1	pyruvate dehydrogenase (acetyl-transferring) (EC-1.2.4.1) (388 aa)	•	•	•	•	•	•	•		0.988
	grail3.0009040502	pyruvate dehydrogenase (acetyl-transferring) (EC-1.2.4.1) (393 aa)	•	•	•	•	•	•	•		0.988
	gw1.97.147.1	dihydrolipoamide acetyltransferase (448 aa)	•		•		•	•	•		0.975
	estExt_Genewise1_v1.C_410201	hypothetical protein (414 aa)	•		•			•	•		0.971
	fgenesh4_pg.C_LG_III000191	SubName- Full=Putative uncharacterized protein; (512 aa)	•		•		•	•	•		0.970
	LPD1	precursor of dehydrogenase dihydrolipoamide dehydrogenase 1 (EC-1.8.1.4) (511 aa)	•			•	•	•	•		0.969
	gw1.XIX.2128.1	hypothetical protein (435 aa)	•		•			•	•		0.969
	estExt_fgenesh4_pg.C_LG_VIII0227	hypothetical protein (588 aa)	•		•		•	•	•		0.962
	LPD3	precursor of dehydrogenase dihydrolipoamide dehydrogenase 3 (EC-1.8.1.4) (527 aa)	•					•	•		0.936

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	325
PLN02683	356	PLN02683, PLN02683, pyruvate dehydrogenase E1 comp	0.0
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	0.0
PTZ00182	355	PTZ00182, PTZ00182, 3-methyl-2-oxobutanate dehydro	1e-166
PRK09212	327	PRK09212, PRK09212, pyruvate dehydrogenase subunit	1e-166
COG0022	324	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogena	1e-157
cd07036	167	cd07036, TPP_PYR_E1-PDHc-beta_like, Pyrimidine (PY	1e-107
CHL00144	327	CHL00144, odpB, pyruvate dehydrogenase E1 componen	7e-89
pfam02779	172	pfam02779, Transket_pyr, Transketolase, pyrimidine	3e-51
pfam02780	124	pfam02780, Transketolase_C, Transketolase, C-termi	8e-33
COG3958	312	COG3958, COG3958, Transketolase, C-terminal subuni	4e-30
smart00861	136	smart00861, Transket_pyr, Transketolase, pyrimidin	9e-29
COG1154	627	COG1154, Dxs, Deoxyxylulose-5-phosphate synthase [	2e-22
PRK05444	580	PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate	4e-21
cd07033	156	cd07033, TPP_PYR_DXS_TK_like, Pyrimidine (PYR) bin	6e-20
cd06586	154	cd06586, TPP_enzyme_PYR, Pyrimidine (PYR) binding	3e-19
TIGR00204	617	TIGR00204, dxs, 1-deoxy-D-xylulose-5-phosphate syn	1e-17
PRK12571	641	PRK12571, PRK12571, 1-deoxy-D-xylulose-5-phosphate	3e-15
PLN02234	641	PLN02234, PLN02234, 1-deoxy-D-xylulose-5-phosphate	2e-12
PRK12315	581	PRK12315, PRK12315, 1-deoxy-D-xylulose-5-phosphate	1e-10
PLN02582	677	PLN02582, PLN02582, 1-deoxy-D-xylulose-5-phosphate	5e-10
PLN02225	701	PLN02225, PLN02225, 1-deoxy-D-xylulose-5-phosphate	2e-07
PRK05899	586	PRK05899, PRK05899, transketolase; Reviewed	1e-04

>gnl|CDD|215368 PLN02683, PLN02683, pyruvate dehydrogenase E1 component subunit beta

 Score =  587 bits (1515), Expect = 0.0
 Identities = 262/298 (87%), Positives = 279/298 (93%), Gaps = 1/298 (0%)

Query: 13  GGSPVARIRPVVSNL-RNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY 71
            G  + R RP  +   R Y+SA K+M VR+ALNSALDEEMSADPKVF+MGEEVGEYQGAY
Sbjct: 2   LGQLLRRTRPAAAAAARGYASAAKEMTVRDALNSALDEEMSADPKVFIMGEEVGEYQGAY 61

Query: 72  KISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSA 131
           KI+KGLL+KYGP+RVLDTPITEAGFTGIGVGAAY GLKPVVEFMTFNFSMQAIDHIINSA
Sbjct: 62  KITKGLLQKYGPDRVLDTPITEAGFTGIGVGAAYAGLKPVVEFMTFNFSMQAIDHIINSA 121

Query: 132 AKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLL 191
           AK+NYMS+GQISVPIVFRGPNGAAAGVGAQHS C+AAWY+SVPGLKVL+PYSSEDARGLL
Sbjct: 122 AKTNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCFAAWYSSVPGLKVLAPYSSEDARGLL 181

Query: 192 KAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVG 251
           KAAIRDPDPVVFLENELLYGESFPVSAEVLDSSF LPIGKAKIEREGKDVTI AFSK+VG
Sbjct: 182 KAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFVLPIGKAKIEREGKDVTIVAFSKMVG 241

Query: 252 LSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 309
            +LKAAEILAKEGISAEVINLRSIRPLDR TINASVRKTNRLVTVEEG+PQHGVGAEI
Sbjct: 242 YALKAAEILAKEGISAEVINLRSIRPLDRDTINASVRKTNRLVTVEEGWPQHGVGAEI 299

Length = 356

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score =  520 bits (1342), Expect = 0.0
 Identities = 194/275 (70%), Positives = 227/275 (82%), Gaps = 3/275 (1%)

Query: 35  KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEA 94
             M VREAL  A+ EEM  D  VF+MGEEV EYQGAYK+++GLL+++G  RV+DTPITE 
Sbjct: 140 VTMTVREALRDAMAEEMRRDEDVFVMGEEVAEYQGAYKVTQGLLQEFGARRVIDTPITEH 199

Query: 95  GFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGA 154
           GF GIGVGAA+ GLKP+VEFMTFNF+MQAID IINSAAK+ YMS GQ+  PIVFRGPNGA
Sbjct: 200 GFAGIGVGAAFAGLKPIVEFMTFNFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGA 259

Query: 155 AAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESF 214
           AA V AQHS  YAAWY+ +PGLKV++PYS+ DA+GLLKAAIRDP+PV+FLENE+LYG+SF
Sbjct: 260 AARVAAQHSQDYAAWYSHIPGLKVVAPYSAADAKGLLKAAIRDPNPVIFLENEILYGQSF 319

Query: 215 PVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRS 274
            V    LD  F LPIGKA+I REGKDVTI +FS  +  +LKAAE LAKEGI AEVI+LR+
Sbjct: 320 DVP--KLD-DFVLPIGKARIHREGKDVTIVSFSIGMTYALKAAEELAKEGIDAEVIDLRT 376

Query: 275 IRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 309
           IRP+D  TI  SV+KTNRLVTVEEG+PQ GVGAEI
Sbjct: 377 IRPMDTETIVESVKKTNRLVTVEEGWPQSGVGAEI 411

Length = 464

>gnl|CDD|185502 PTZ00182, PTZ00182, 3-methyl-2-oxobutanate dehydrogenase; Provisional

 Score =  467 bits (1203), Expect = e-166
 Identities = 169/293 (57%), Positives = 204/293 (69%), Gaps = 7/293 (2%)

Query: 21  RPVVSNLRNYS----SAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKG 76
               S  R+ S     A  +M VREA+NSALDEE++ DPKVF++GE+V +Y G YK +KG
Sbjct: 15  NSFSSASRSSSTESKGATVKMNVREAINSALDEELARDPKVFVLGEDVAQYGGVYKCTKG 74

Query: 77  LLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNY 136
           LL+KYGP+RV DTPITE GF G  +GAA  GL+P+ EFM  +F   A D I+N AAK  Y
Sbjct: 75  LLDKYGPDRVFDTPITEQGFAGFAIGAAMNGLRPIAEFMFADFIFPAFDQIVNEAAKYRY 134

Query: 137 MSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR 196
           MS GQ   PIV RGPNGA    GA HS  + A++A VPGLKV++P   EDA+GLLKAAIR
Sbjct: 135 MSGGQFDCPIVIRGPNGAVGHGGAYHSQSFEAYFAHVPGLKVVAPSDPEDAKGLLKAAIR 194

Query: 197 DPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKA 256
           DP+PVVF E +LLY ES  V  E     + LP+GKAK+ REGKDVTI  +   V ++LKA
Sbjct: 195 DPNPVVFFEPKLLYRESVEVVPEA---DYTLPLGKAKVVREGKDVTIVGYGSQVHVALKA 251

Query: 257 AEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 309
           AE LAKEGIS EVI+LRS+RP DR TI  SV+KT R V V E  P  G+GAEI
Sbjct: 252 AEELAKEGISCEVIDLRSLRPWDRETIVKSVKKTGRCVIVHEAPPTCGIGAEI 304

Length = 355

>gnl|CDD|169719 PRK09212, PRK09212, pyruvate dehydrogenase subunit beta; Validated

 Score =  464 bits (1195), Expect = e-166
 Identities = 189/275 (68%), Positives = 224/275 (81%), Gaps = 4/275 (1%)

Query: 35  KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEA 94
            Q+ VREAL  A+ EEM  DPKVFLMGEEVGEYQGAYK+++GLLE++GP+RV+DTPITE 
Sbjct: 2   AQLTVREALRDAMQEEMERDPKVFLMGEEVGEYQGAYKVTQGLLEQFGPKRVIDTPITEH 61

Query: 95  GFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGA 154
           GF G+ VGAA+ GL+P+VEFMTFNFSMQAID I+NSAAK+NYMS GQ+  PIVFRGPNGA
Sbjct: 62  GFAGLAVGAAFAGLRPIVEFMTFNFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPNGA 121

Query: 155 AAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESF 214
           AA V AQHS CYAAWY+ +PGLKV++PY + D +GLLK AIRDP+PV+FLENE+LYG S 
Sbjct: 122 AARVAAQHSQCYAAWYSHIPGLKVVAPYFAADCKGLLKTAIRDPNPVIFLENEILYGHSH 181

Query: 215 PVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRS 274
               EV +    +PIGKA I REG DVTI  FS  V L+L+AAE+L KEGIS EVI+LR+
Sbjct: 182 ----EVPEEEESIPIGKAAILREGSDVTIVTFSIQVKLALEAAELLEKEGISVEVIDLRT 237

Query: 275 IRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 309
           +RPLD  TI  SV+KTNRLV VEEG+P  GVGAEI
Sbjct: 238 LRPLDTETIIESVKKTNRLVVVEEGWPFAGVGAEI 272

Length = 327

>gnl|CDD|223101 COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]

 Score =  441 bits (1138), Expect = e-157
 Identities = 150/274 (54%), Positives = 191/274 (69%), Gaps = 3/274 (1%)

Query: 36  QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAG 95
           QM + EA+N A+DEEM  D +V ++GE+VG Y G ++++KGL EK+G ERV+DTPI E+G
Sbjct: 1   QMTMIEAINEAMDEEMERDERVVVLGEDVGVYGGVFRVTKGLQEKFGEERVIDTPIAESG 60

Query: 96  FTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA 155
             GI VGAA  GL+P+VE    +F   A D I+N AAK  Y S GQ +VPIV R PNG  
Sbjct: 61  IAGIAVGAALTGLRPIVEIQFADFIYPAFDQIVNQAAKIRYRSGGQFTVPIVIRTPNGGG 120

Query: 156 AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFP 215
            G GAQHS    A +A +PGLKV+ P +  DA+GLLKAAIRDPDPV+FLE++ LY     
Sbjct: 121 IGGGAQHSQSLEALFAHIPGLKVVMPSTPYDAKGLLKAAIRDPDPVIFLEHKRLYRSF-- 178

Query: 216 VSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSI 275
              EV +  + +P+GKAKI REG DVTI  +  +V  +L+AAE L KEGISAEVI+LR++
Sbjct: 179 -KGEVPEEDYTIPLGKAKIVREGSDVTIVTYGAMVHTALEAAEELEKEGISAEVIDLRTL 237

Query: 276 RPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 309
            PLD+ TI ASV+KT RLV V E     G+GAEI
Sbjct: 238 SPLDKETIIASVKKTGRLVIVHEAPKTGGIGAEI 271

Length = 324

>gnl|CDD|132919 cd07036, TPP_PYR_E1-PDHc-beta_like, Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins

 Score =  309 bits (794), Expect = e-107
 Identities = 99/167 (59%), Positives = 129/167 (77%)

Query: 41  EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIG 100
           +A+N ALDEEM  DP+V ++GE+VG+Y G +K++KGLL+K+GP+RV+DTPI EAG  G+ 
Sbjct: 1   QAINEALDEEMERDPRVVVLGEDVGDYGGVFKVTKGLLDKFGPDRVIDTPIAEAGIVGLA 60

Query: 101 VGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGA 160
           VGAA  GL+P+VE M  +F++ A D I+N AAK  YMS GQ  VPIV RGPNG   G GA
Sbjct: 61  VGAAMNGLRPIVEIMFADFALPAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGGGIGGGA 120

Query: 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENE 207
           QHS    AW+A +PGLKV++P +  DA+GLLKAAIRD DPV+FLE++
Sbjct: 121 QHSQSLEAWFAHIPGLKVVAPSTPYDAKGLLKAAIRDDDPVIFLEHK 167

Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. E1-PDHc is an alpha2beta2 dimer-of-heterodimers having two active sites lying between PYR and PP domains of separate subunits, the PYR domains are arranged on the beta subunit, the PP domains on the alpha subunits. PDHc catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate during the breakdown of branched chain amino acids. Length = 167

>gnl|CDD|177066 CHL00144, odpB, pyruvate dehydrogenase E1 component beta subunit; Validated

 Score =  268 bits (688), Expect = 7e-89
 Identities = 122/274 (44%), Positives = 188/274 (68%), Gaps = 4/274 (1%)

Query: 36  QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAG 95
           ++ + EAL  A+DEEM+ DP+VF++GE+VG Y G+YK++KGL EKYG  RVLDTPI E  
Sbjct: 3   EVFLFEALREAIDEEMARDPRVFVIGEDVGHYGGSYKVTKGLHEKYGDLRVLDTPIAENS 62

Query: 96  FTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA 155
           FTG+ +GAA  GL+P+VE M   F + A + I N+A   +Y S G  ++PIV RGP G  
Sbjct: 63  FTGMAIGAAMTGLRPIVEGMNMGFLLLAFNQISNNAGMLHYTSGGNFTIPIVIRGPGGVG 122

Query: 156 AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFP 215
             +GA+HS    +++ SVPGL++++  +  +A+GLLK+AIR  +PV+F E+ LLY     
Sbjct: 123 RQLGAEHSQRLESYFQSVPGLQIVACSTPYNAKGLLKSAIRSNNPVIFFEHVLLYN---- 178

Query: 216 VSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSI 275
           +  E+ D+ + LP+ KA++ R G D+TI  +S++    L+A ++L ++G   E+I+L S+
Sbjct: 179 LKEEIPDNEYLLPLEKAEVVRPGNDITILTYSRMRHHVLQAVKVLVEKGYDPEIIDLISL 238

Query: 276 RPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 309
           +PLD  TI+ SV+KT++++ VEE     G+GAE+
Sbjct: 239 KPLDLGTISKSVKKTHKVLIVEECMKTGGIGAEL 272

Length = 327

>gnl|CDD|217226 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain

 Score =  166 bits (424), Expect = 3e-51
 Identities = 60/179 (33%), Positives = 85/179 (47%), Gaps = 9/179 (5%)

Query: 35  KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEA 94
           K++  R+A   AL E    DP+V   G +V    G + ++KGLL   G  RV+DT I E 
Sbjct: 1   KKIATRKASGEALAELAKRDPRVVGGGADVA--GGTFTVTKGLLHPQGDGRVIDTGIAEQ 58

Query: 95  GFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVP-IVFRGPNG 153
              GI  G A +GL P VE    +F+           A  +Y + G++ VP +V R P G
Sbjct: 59  AMVGIANGMALHGLLPPVEATFGDFAN------RADDAIRHYAALGKLPVPFVVTRDPIG 112

Query: 154 AAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGE 212
                    S    A+  ++P LKV+ P  + + +GLL+AAI D  PVV      L   
Sbjct: 113 VGEDGPTHQSQEDLAFLRAIPNLKVVRPSDAAETKGLLRAAIEDDGPVVLRLPRQLLRH 171

This family includes transketolase enzymes, pyruvate dehydrogenases, and branched chain alpha-keto acid decarboxylases. Length = 172

>gnl|CDD|217227 pfam02780, Transketolase_C, Transketolase, C-terminal domain

 Score =  117 bits (296), Expect = 8e-33
 Identities = 48/80 (60%), Positives = 61/80 (76%)

Query: 230 GKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRK 289
           GKA+I REG DVTI A+  +V  +L+AAE LAKEGISAEVI+LR+++PLD  TI  SV+K
Sbjct: 1   GKAEILREGDDVTIVAYGSMVHEALEAAEELAKEGISAEVIDLRTVKPLDEDTILESVKK 60

Query: 290 TNRLVTVEEGFPQHGVGAEI 309
           T RLV VEE   + G G+E+
Sbjct: 61  TGRLVVVEEAVKRGGFGSEV 80

The C-terminal domain of transketolase has been proposed as a regulatory molecule binding site. Length = 124

>gnl|CDD|226467 COG3958, COG3958, Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]

 Score =  115 bits (291), Expect = 4e-30
 Identities = 77/266 (28%), Positives = 118/266 (44%), Gaps = 28/266 (10%)

Query: 39  VREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTG 98
           +R+     L E    +  + ++  ++           G   K  P+R  +  I E    G
Sbjct: 9   LRKVYGETLAELGRKNSDIVVLDADLSSSTKT-----GYFAKEFPDRFFNVGIAEQDMVG 63

Query: 99  IGVGAAYYGLKPVVEFMTFNFSM----QAIDHIINSAAKSNYMSSGQISVPIVFRGPNGA 154
              G A  G KP V      F+     +A + I NS A +N      ++V IV       
Sbjct: 64  TAAGLALAGKKPFV----STFAAFLSRRAWEQIRNSIAYNN------LNVKIVATHAGVT 113

Query: 155 AAGVGAQHSHCYA--AWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGE 212
               G+ H       A    +P + V++P  + + R +L        PV ++    L   
Sbjct: 114 YGEDGSSH-QALEDIAIMRGLPNMTVIAPADAVETRAILDQIADYKGPV-YMR---LGRG 168

Query: 213 SFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINL 272
             PV  +    +F   IGKA + R+G D+TI A   +V  +L+AAEIL KEGISA VIN+
Sbjct: 169 KVPVVVDEGGYTF--EIGKANVLRDGSDLTIIATGVMVAEALEAAEILKKEGISAAVINM 226

Query: 273 RSIRPLDRSTINASVRKTNRLVTVEE 298
            +I+P+D   I  + R+T R+VT EE
Sbjct: 227 FTIKPIDEQAILKAARETGRIVTAEE 252

Length = 312

>gnl|CDD|214865 smart00861, Transket_pyr, Transketolase, pyrimidine binding domain

 Score =  107 bits (270), Expect = 9e-29
 Identities = 51/128 (39%), Positives = 67/128 (52%), Gaps = 12/128 (9%)

Query: 87  LDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPI 146
           +DT I E    G   G A +GL+PVVE   F F  +A D I ++ A  N        VP+
Sbjct: 18  IDTGIAEQAMVGFAAGLALHGLRPVVEIF-FTFFDRAKDQIRSAGASGN--------VPV 68

Query: 147 VFR-GPNGAAAGVGA-QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDP-VVF 203
           VFR    G     G   HS    A   ++PGLKV++P    +A+GLL+AAIRD  P V+ 
Sbjct: 69  VFRHDGGGGVGEDGPTHHSIEDEALLRAIPGLKVVAPSDPAEAKGLLRAAIRDDGPVVIR 128

Query: 204 LENELLYG 211
           LE + LY 
Sbjct: 129 LERKSLYR 136

Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. Length = 136

>gnl|CDD|224076 COG1154, Dxs, Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]

 Score = 97.7 bits (244), Expect = 2e-22
 Identities = 66/235 (28%), Positives = 104/235 (44%), Gaps = 27/235 (11%)

Query: 83  PERVLDTPITEAGFTGIGVGAAYYGLKPVVE-FMTFNFSMQ-AIDHIINSAAKSNYMSSG 140
           P+R  D  I E        G A  G+KPVV  + TF   +Q A D +I+  A  N     
Sbjct: 357 PDRFFDVGIAEQHAVTFAAGLAAEGMKPVVAIYSTF---LQRAYDQLIHDVAIQN----- 408

Query: 141 QISVPIVF---RGPNGAAAGVGAQHSHCYA-AWYASVPGLKVLSPYSSEDARGLLKAAIR 196
              +P+ F   R   G     G  H   +  ++   +P + +++P   E+ R +L  A+ 
Sbjct: 409 ---LPVTFAIDRA--GIVGADGPTHQGLFDLSFLRCIPNMVIMAPRDEEELRQMLYTALA 463

Query: 197 -DPDPVVF-LENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSL 254
            D  PV          G       E L       IGK ++ +EG+ V I AF  ++  +L
Sbjct: 464 QDDGPVAIRYPRGNGVGVILTPELEPL------EIGKGELLKEGEKVAILAFGTMLPEAL 517

Query: 255 KAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 309
           K AE L   GIS  V++ R ++PLD + +    +  + +VT+EE     G G+ +
Sbjct: 518 KVAEKLNAYGISVTVVDPRFVKPLDEALLLELAKSHDLVVTLEENVVDGGFGSAV 572

Length = 627

>gnl|CDD|235470 PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional

 Score = 93.6 bits (234), Expect = 4e-21
 Identities = 76/250 (30%), Positives = 115/250 (46%), Gaps = 55/250 (22%)

Query: 79  EKYGPERVLDTPITE------AGFTGIGVGAAYYGLKPVVE-FMTFNFSMQ-AIDHIINS 130
           +++ P+R  D  I E      A       G A  GLKPVV  + TF   +Q A D +I+ 
Sbjct: 317 KRF-PDRYFDVGIAEQHAVTFAA------GLATEGLKPVVAIYSTF---LQRAYDQVIHD 366

Query: 131 AAKSNYMSSGQISVPIVF---RGPNGAAAGV----GAQHSHCY-AAWYASVPGLKVLSPY 182
            A  N        +P+ F   R      AG+    G  H   +  ++   +P + +++P 
Sbjct: 367 VALQN--------LPVTFAIDR------AGLVGADGPTHQGAFDLSYLRCIPNMVIMAPS 412

Query: 183 SSEDARGLLKAAIRDPD-PVVFLENELLY--GESFPVSAEVLDSSFCLPIGKAKIEREGK 239
              + R +L  A+   D P+        Y  G    V    L+    LPIGK ++ REG+
Sbjct: 413 DENELRQMLYTALAYDDGPIAIR-----YPRGNGVGVELPELEP---LPIGKGEVLREGE 464

Query: 240 DVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEG 299
           DV I AF  ++  +LKAAE LA    SA V++ R ++PLD   +     K + +VTVEEG
Sbjct: 465 DVAILAFGTMLAEALKAAERLA----SATVVDARFVKPLDEELLLELAAKHDLVVTVEEG 520

Query: 300 FPQHGVGAEI 309
               G G+ +
Sbjct: 521 AIMGGFGSAV 530

Length = 580

>gnl|CDD|132916 cd07033, TPP_PYR_DXS_TK_like, Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins

 Score = 84.4 bits (210), Expect = 6e-20
 Identities = 47/167 (28%), Positives = 69/167 (41%), Gaps = 19/167 (11%)

Query: 41  EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIG 100
           +A   AL E    DP++  +  ++G   G  K +K       P+R +D  I E    GI 
Sbjct: 1   KAFGEALLELAKKDPRIVALSADLGGSTGLDKFAKKF-----PDRFIDVGIAEQNMVGIA 55

Query: 101 VGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGA 160
            G A +GLKP V   +F F  +A D I +  A  N        +P+ F G   A   VG 
Sbjct: 56  AGLALHGLKPFVSTFSF-FLQRAYDQIRHDVALQN--------LPVKFVG-THAGISVGE 105

Query: 161 ----QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVF 203
                      A   ++P + VL P  + +    L+AA+    PV  
Sbjct: 106 DGPTHQGIEDIALLRAIPNMTVLRPADANETAAALEAALEYDGPVYI 152

Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Like many TPP-dependent enzymes DXS and TK are homodimers having a PYR and a PP domain on the same subunit. TK has two active sites per dimer which lie between PYR and PP domains of different subunits. For DXS each active site is located at the interface of a PYR and a PP domain from the same subunit. E1-PDHc is an alpha2beta2 dimer-of-heterodimers having two active sites but having the PYR and PP domains arranged on separate subunits, the PYR domains on the beta subunits, the PP domains on the alpha subunits. DXS is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis, it catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. TK also plays a central role in the Calvin cycle in plants. PDHc catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. This subfamily includes the beta subunits of the E1 component of the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). ADC participates in the breakdown of acetoin. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate during the breakdown of branched chain amino acids. Length = 156

>gnl|CDD|132915 cd06586, TPP_enzyme_PYR, Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes

 Score = 82.4 bits (204), Expect = 3e-19
 Identities = 41/169 (24%), Positives = 63/169 (37%), Gaps = 23/169 (13%)

Query: 46  ALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLE--KYGPERVLDTPITEAGFTGIGVGA 103
           A  E ++A     + G    E          LL+  + G +R++DT I E G  G   G 
Sbjct: 2   AFAEVLTAWGVRHVFGYPGDEI-------SSLLDALREGDKRIIDTVIHELGAAGAAAGY 54

Query: 104 AYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAAAGVGAQ 161
           A  G  PVV   +    + AI+ + ++AA+          +P+VF       +A      
Sbjct: 55  ARAGGPPVVIVTSGTGLLNAINGLADAAAE---------HLPVVFLIGARGISAQAKQTF 105

Query: 162 HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD---PDPVVFLENE 207
            S      Y S+P   + SP  +E   G+  A         PVV     
Sbjct: 106 QSMFDLGMYRSIPEANISSPSPAELPAGIDHAIRTAYASQGPVVVRLPR 154

Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate decarboxylase (ComDE), and the E1 component of human pyruvate dehydrogenase complex (E1- PDHc) the PYR and PP domains appear on different subunits. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. For many of these enzymes the active sites lie between PP and PYR domains on different subunits. However, for the homodimeric enzymes 1-deoxy-D-xylulose 5-phosphate synthase (DXS) and Desulfovibrio africanus pyruvate:ferredoxin oxidoreductase (PFOR), each active site lies at the interface of the PYR and PP domains from the same subunit. Length = 154

>gnl|CDD|129308 TIGR00204, dxs, 1-deoxy-D-xylulose-5-phosphate synthase

 Score = 83.3 bits (206), Expect = 1e-17
 Identities = 60/237 (25%), Positives = 100/237 (42%), Gaps = 18/237 (7%)

Query: 76  GLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSN 135
               K+ P+R  D  I E        G A  G KP V   +  F  +A D +++      
Sbjct: 345 KFSRKF-PDRYFDVAIAEQHAVTFAAGMAIEGYKPFVAIYS-TFLQRAYDQVVHDVCIQK 402

Query: 136 YMSSGQISVPIVFRGPNGAAAGV-GAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKA 193
                   +P++F        G  G  H   +  ++   +P + +++P    + R +L  
Sbjct: 403 --------LPVLFAIDRAGIVGADGETHQGAFDISYLRCIPNMVIMAPSDENELRQMLYT 454

Query: 194 AIR-DPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGL 252
               D  P+        Y     V  E+      LPIGK+++ R+G+ + I  F  +V  
Sbjct: 455 GYHYDDGPIAVR-----YPRGNAVGVELTPEPEKLPIGKSEVLRKGEKILILGFGTLVPE 509

Query: 253 SLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 309
           +L+ AE L ++GI A V++ R ++PLD   I        +LVTVEE     G G+ +
Sbjct: 510 ALEVAESLNEKGIEATVVDARFVKPLDEELILEIAASHEKLVTVEENAIMGGAGSAV 566

DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP) [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridoxine, Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]. Length = 617

>gnl|CDD|183601 PRK12571, PRK12571, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional

 Score = 76.3 bits (188), Expect = 3e-15
 Identities = 67/243 (27%), Positives = 105/243 (43%), Gaps = 30/243 (12%)

Query: 76  GLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSN 135
             L+K  P RV D  I E        G A  GLKP     +  F  +  D +++  A  N
Sbjct: 353 DKLQKRFPNRVFDVGIAEQHAVTFAAGLAAAGLKPFCAVYS-TFLQRGYDQLLHDVALQN 411

Query: 136 YMSSGQISVPIVF---RGPNGAAAGV----GAQHSHCY-AAWYASVPGLKVLSPYSSEDA 187
                   +P+ F   R      AG+    GA H+  +  A+  ++P + V++P    + 
Sbjct: 412 --------LPVRFVLDR------AGLVGADGATHAGAFDLAFLTNLPNMTVMAPRDEAEL 457

Query: 188 RGLLKAAI-RDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAF 246
           R +L+ A   D  P+        +     V  E+      L IGK ++ REG DV I + 
Sbjct: 458 RHMLRTAAAHDDGPIAVR-----FPRGEGVGVEIPAEGTILGIGKGRVPREGPDVAILSV 512

Query: 247 SKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVG 306
              +   L AA++L  EGIS  V + R ++PLD +  +  VR    ++  E+G    G G
Sbjct: 513 GAHLHECLDAADLLEAEGISVTVADPRFVKPLDEALTDLLVRHHIVVIVEEQG-AMGGFG 571

Query: 307 AEI 309
           A +
Sbjct: 572 AHV 574

Length = 641

>gnl|CDD|177878 PLN02234, PLN02234, 1-deoxy-D-xylulose-5-phosphate synthase

 Score = 67.4 bits (164), Expect = 2e-12
 Identities = 66/258 (25%), Positives = 107/258 (41%), Gaps = 22/258 (8%)

Query: 46  ALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAY 105
           AL  E  AD  +  +   +G   G   ++  L E   P R  D  I E        G A 
Sbjct: 366 ALIAEAEADKDIVAIHAAMG---GGTMLN--LFESRFPTRCFDVGIAEQHAVTFAAGLAC 420

Query: 106 YGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHC 165
            GLKP     + +F  +A D +++              +P+ F        G     +HC
Sbjct: 421 EGLKPFCTIYS-SFMQRAYDQVVHDVDLQK--------LPVRFAIDRAGLMGADGP-THC 470

Query: 166 YA---AWYASVPGLKVLSPYSSEDARGLL-KAAIRDPDPVVFLENELLYGESFPVSAEVL 221
            A    + A +P + V++P    +   ++  AA  D  P  F  +    G    VS    
Sbjct: 471 GAFDVTFMACLPNMIVMAPSDEAELFNMVATAAAIDDRPSCFRYHR---GNGIGVSLPPG 527

Query: 222 DSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRS 281
           +    L IG+ +I R+G+ V +  +   V   L+AA +L++ G+   V + R  +PLD +
Sbjct: 528 NKGVPLQIGRGRILRDGERVALLGYGSAVQRCLEAASMLSERGLKITVADARFCKPLDVA 587

Query: 282 TINASVRKTNRLVTVEEG 299
            I +  +    L+TVEEG
Sbjct: 588 LIRSLAKSHEVLITVEEG 605

Length = 641

>gnl|CDD|237053 PRK12315, PRK12315, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional

 Score = 61.9 bits (151), Expect = 1e-10
 Identities = 70/296 (23%), Positives = 121/296 (40%), Gaps = 55/296 (18%)

Query: 28  RNYSSAVKQMMVRE--------ALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLE 79
            +YSS     ++++        A+N+A+       P VF + E   +Y            
Sbjct: 278 ESYSSVTLDYLLKKIKEGKPVVAINAAI-------PGVFGLKEFRKKY------------ 318

Query: 80  KYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSS 139
              P++ +D  I E        G A  G +PV+ F+   F  +A D + +  A +N    
Sbjct: 319 ---PDQYVDVGIAEQESVAFASGIAANGARPVI-FVNSTFLQRAYDQLSHDLAINNN--- 371

Query: 140 GQISVPIVFRGPNGAAAGVGAQHSHCYA-AWYASVPGLKVLSPYSSEDARGLLKAAIRDP 198
                P V     G+ +G    H   +     +++P L  L+P + E+   +L+ A+   
Sbjct: 372 -----PAVMIVFGGSISGNDVTHLGIFDIPMISNIPNLVYLAPTTKEELIAMLEWALTQH 426

Query: 199 D-PVVFL--ENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLK 255
           + PV     E+ +  G          D S      K ++ + G+ V I A      L  K
Sbjct: 427 EHPVAIRVPEHGVESGP-----TVDTDYSTL----KYEVTKAGEKVAILALGDFYELGEK 477

Query: 256 AAEILAKE-GISAEVINLRSIRPLDRSTINASVRKTNRLV-TVEEGFPQHGVGAEI 309
            A+ L +E GI A +IN + I  LD   +   +++ + LV T+E+G    G G +I
Sbjct: 478 VAKKLKEELGIDATLINPKFITGLDEELLE-KLKEDHELVVTLEDGILDGGFGEKI 532

Length = 581

>gnl|CDD|178194 PLN02582, PLN02582, 1-deoxy-D-xylulose-5-phosphate synthase

 Score = 60.3 bits (146), Expect = 5e-10
 Identities = 60/222 (27%), Positives = 92/222 (41%), Gaps = 19/222 (8%)

Query: 83  PERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQI 142
           P R  D  I E        G A  GLKP     +  F  +  D +++             
Sbjct: 397 PTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSS-FLQRGYDQVVHDVDLQK------- 448

Query: 143 SVPIVFRGPNGAAAGVGAQH-SHCYA---AWYASVPGLKVLSPYSSEDARGLL-KAAIRD 197
            +P+ F      A  VGA   +HC A    + A +P + V++P    +   ++  AA  D
Sbjct: 449 -LPVRF--AMDRAGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELFHMVATAAAID 505

Query: 198 PDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAA 257
             P  F       G    V     +    + +GK +I  EG+ V +  +   V   L AA
Sbjct: 506 DRPSCF---RYPRGNGIGVQLPPNNKGIPIEVGKGRILLEGERVALLGYGTAVQSCLAAA 562

Query: 258 EILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEG 299
            +L + G+SA V + R  +PLDR+ I +  +    L+TVEEG
Sbjct: 563 SLLERHGLSATVADARFCKPLDRALIRSLAKSHEVLITVEEG 604

Length = 677

>gnl|CDD|177870 PLN02225, PLN02225, 1-deoxy-D-xylulose-5-phosphate synthase

 Score = 51.6 bits (123), Expect = 2e-07
 Identities = 65/287 (22%), Positives = 118/287 (41%), Gaps = 44/287 (15%)

Query: 23  VVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYG 82
           +V + R YS    + +V EA       E   D  V   G E+      ++      E++ 
Sbjct: 376 MVKDRRTYSDCFVEALVMEA-------EKDRDIVVVHAGMEMDASLITFQ------ERF- 421

Query: 83  PERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQI 142
           P+R  +  + E        G +  GLKP    +   F  +A D +++   +        +
Sbjct: 422 PDRFFNVGMAEQHAVTFSAGLSSGGLKPFC-IIPSAFLQRAYDQVVHDVDRQR----KAV 476

Query: 143 SVPIVFRGPNGAAAGVGAQHSHCYA---AWYASVPGLKVLSPYSSEDARGLLKAAIRDPD 199
              I   G  G+   V      C A   A+ +S+P +  ++P   ++   ++  A    D
Sbjct: 477 RFVITSAGLVGSDGPV-----QCGAFDIAFMSSLPNMIAMAPADEDELVNMVATAAYVTD 531

Query: 200 -PVVFLENELLYGESFPVSAEVLDSSFCLP------IGKAKIEREGKDVTITAFSKIVGL 252
            PV F          FP    +++ ++ +P      IG+ ++  EG+DV +  +  +V  
Sbjct: 532 RPVCF---------RFP-RGSIVNMNYLVPTGLPIEIGRGRVLVEGQDVALLGYGAMVQN 581

Query: 253 SLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEG 299
            L A  +L+K G++  V + R  +PLD   +    +    L+TVEEG
Sbjct: 582 CLHAHSLLSKLGLNVTVADARFCKPLDIKLVRDLCQNHKFLITVEEG 628

Length = 701

>gnl|CDD|235639 PRK05899, PRK05899, transketolase; Reviewed

 Score = 43.6 bits (104), Expect = 1e-04
 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 10/80 (12%)

Query: 227 LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDR------ 280
                  + R+  DV + A    V L+L+AA+ L  EGI   V+++ S    D       
Sbjct: 461 GVAKGGYVLRDDPDVILIATGSEVHLALEAADELEAEGIKVRVVSMPSTELFDEQDAAYK 520

Query: 281 -STINASVRKTNRLVTVEEG 299
            S + A+V      V VE G
Sbjct: 521 ESVLPAAVTAR---VAVEAG 537

Length = 586

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	325
PLN02683	356	pyruvate dehydrogenase E1 component subunit beta	100.0
CHL00144	327	odpB pyruvate dehydrogenase E1 component beta subu	100.0
COG0022	324	AcoB Pyruvate/2-oxoglutarate dehydrogenase complex	100.0
PRK09212	327	pyruvate dehydrogenase subunit beta; Validated	100.0
COG3958	312	Transketolase, C-terminal subunit [Carbohydrate tr	100.0
PRK11892	464	pyruvate dehydrogenase subunit beta; Provisional	100.0
PTZ00182	355	3-methyl-2-oxobutanate dehydrogenase; Provisional	100.0
KOG0524	359	consensus Pyruvate dehydrogenase E1, beta subunit	100.0
PLN02225	701	1-deoxy-D-xylulose-5-phosphate synthase	100.0
COG1154	627	Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme m	100.0
TIGR00204	617	dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s	100.0
PLN02234	641	1-deoxy-D-xylulose-5-phosphate synthase	100.0
PLN02582	677	1-deoxy-D-xylulose-5-phosphate synthase	100.0
PRK12315	581	1-deoxy-D-xylulose-5-phosphate synthase; Provision	100.0
PRK12571	641	1-deoxy-D-xylulose-5-phosphate synthase; Provision	100.0
PRK05444	580	1-deoxy-D-xylulose-5-phosphate synthase; Provision	100.0
KOG0525	362	consensus Branched chain alpha-keto acid dehydroge	100.0
TIGR00232	653	tktlase_bact transketolase, bacterial and yeast. T	100.0
PRK05899	624	transketolase; Reviewed	100.0
KOG0523	632	consensus Transketolase [Carbohydrate transport an	100.0
PTZ00089	661	transketolase; Provisional	100.0
PRK12753	663	transketolase; Reviewed	100.0
PLN02790	654	transketolase	100.0
TIGR03186	889	AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. S	100.0
PRK09405	891	aceE pyruvate dehydrogenase subunit E1; Reviewed	100.0
PRK12754	663	transketolase; Reviewed	100.0
cd07036	167	TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding	100.0
PRK13012	896	2-oxoacid dehydrogenase subunit E1; Provisional	100.0
cd07033	156	TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domai	100.0
TIGR00239	929	2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 compon	100.0
PRK09404	924	sucA 2-oxoglutarate dehydrogenase E1 component; Re	100.0
PF02779	178	Transket_pyr: Transketolase, pyrimidine binding do	100.0
COG0021	663	TktA Transketolase [Carbohydrate transport and met	99.97
smart00861	168	Transket_pyr Transketolase, pyrimidine binding dom	99.97
PRK07119	352	2-ketoisovalerate ferredoxin reductase; Validated	99.89
PRK08659	376	2-oxoglutarate ferredoxin oxidoreductase subunit a	99.86
PRK05261	785	putative phosphoketolase; Provisional	99.84
PRK09627	375	oorA 2-oxoglutarate-acceptor oxidoreductase subuni	99.84
TIGR03336	595	IOR_alpha indolepyruvate ferredoxin oxidoreductase	99.83
PRK09622	407	porA pyruvate flavodoxin oxidoreductase subunit al	99.83
PF02780	124	Transketolase_C: Transketolase, C-terminal domain;	99.81
TIGR00759	885	aceE pyruvate dehydrogenase E1 component, homodime	99.8
PRK08366	390	vorA 2-ketoisovalerate ferredoxin oxidoreductase s	99.78
TIGR03710	562	OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha s	99.78
PRK08367	394	porA pyruvate ferredoxin oxidoreductase subunit al	99.76
COG2609	887	AceE Pyruvate dehydrogenase complex, dehydrogenase	99.65
COG4231	640	Indolepyruvate ferredoxin oxidoreductase, alpha an	99.58
TIGR02176	1165	pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxid	99.47
COG0674	365	PorA Pyruvate:ferredoxin oxidoreductase and relate	99.4
PRK13030	1159	2-oxoacid ferredoxin oxidoreductase; Provisional	99.35
COG3957	793	Phosphoketolase [Carbohydrate transport and metabo	99.3
PRK09193	1165	indolepyruvate ferredoxin oxidoreductase; Validate	99.27
PRK13029	1186	2-oxoacid ferredoxin oxidoreductase; Provisional	99.22
PRK12270	1228	kgd alpha-ketoglutarate decarboxylase; Reviewed	99.21
cd06586	154	TPP_enzyme_PYR Pyrimidine (PYR) binding domain of	99.2
KOG0450	1017	consensus 2-oxoglutarate dehydrogenase, E1 subunit	98.83
COG0567	906	SucA 2-oxoglutarate dehydrogenase complex, dehydro	98.56
KOG0451	913	consensus Predicted 2-oxoglutarate dehydrogenase,	98.55
PF01855	230	POR_N: Pyruvate flavodoxin/ferredoxin oxidoreducta	98.53
PF03894	179	XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate	97.75
cd07034	160	TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) bindi	97.62
cd07035	155	TPP_PYR_POX_like Pyrimidine (PYR) binding domain o	97.2
PF02776	172	TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-ter	96.74
TIGR03297	361	Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi	96.26
PRK07092	530	benzoylformate decarboxylase; Reviewed	96.09
PRK08322	547	acetolactate synthase; Reviewed	96.08
TIGR03845	157	sulfopyru_alph sulfopyruvate decarboxylase, alpha	95.83
TIGR03457	579	sulphoacet_xsc sulfoacetaldehyde acetyltransferase	95.57
PRK08611	576	pyruvate oxidase; Provisional	95.55
PRK08199	557	thiamine pyrophosphate protein; Validated	95.52
cd07039	164	TPP_PYR_POX Pyrimidine (PYR) binding domain of POX	95.37
PRK08617	552	acetolactate synthase; Reviewed	95.26
PRK07525	588	sulfoacetaldehyde acetyltransferase; Validated	95.25
cd02001	157	TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) famil	95.08
TIGR02418	539	acolac_catab acetolactate synthase, catabolic. Ace	94.94
PRK07586	514	hypothetical protein; Validated	94.8
PRK12474	518	hypothetical protein; Provisional	94.65
PRK08266	542	hypothetical protein; Provisional	94.62
PRK09124	574	pyruvate dehydrogenase; Provisional	94.58
COG0028	550	IlvB Thiamine pyrophosphate-requiring enzymes [ace	94.57
PRK05858	542	hypothetical protein; Provisional	94.55
PRK07524	535	hypothetical protein; Provisional	94.54
PRK06965	587	acetolactate synthase 3 catalytic subunit; Validat	94.49
PRK07064	544	hypothetical protein; Provisional	94.41
TIGR02720	575	pyruv_oxi_spxB pyruvate oxidase. Members of this f	94.22
PRK06466	574	acetolactate synthase 3 catalytic subunit; Validat	94.09
PRK06457	549	pyruvate dehydrogenase; Provisional	94.08
TIGR00118	558	acolac_lg acetolactate synthase, large subunit, bi	93.98
PLN02470	585	acetolactate synthase	93.89
PRK07979	574	acetolactate synthase 3 catalytic subunit; Validat	93.77
PRK06725	570	acetolactate synthase 3 catalytic subunit; Validat	93.77
PRK08978	548	acetolactate synthase 2 catalytic subunit; Reviewe	93.77
PRK11269	591	glyoxylate carboligase; Provisional	93.71
PRK07710	571	acetolactate synthase catalytic subunit; Reviewed	93.69
cd07037	162	TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-	93.65
PRK08273	597	thiamine pyrophosphate protein; Provisional	93.54
TIGR02177	287	PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta	93.49
cd02004	172	TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) fam	93.49
PRK06048	561	acetolactate synthase 3 catalytic subunit; Reviewe	93.3
COG4032	172	Predicted thiamine-pyrophosphate-binding protein [	93.24
PRK09107	595	acetolactate synthase 3 catalytic subunit; Validat	93.22
PRK06546	578	pyruvate dehydrogenase; Provisional	93.18
cd02018	237	TPP_PFOR Thiamine pyrophosphate (TPP family), Pyru	93.14
PRK08527	563	acetolactate synthase 3 catalytic subunit; Validat	93.13
PRK07789	612	acetolactate synthase 1 catalytic subunit; Validat	92.93
PRK08155	564	acetolactate synthase catalytic subunit; Validated	92.92
PRK06882	574	acetolactate synthase 3 catalytic subunit; Validat	92.73
PRK07282	566	acetolactate synthase catalytic subunit; Reviewed	92.56
cd07038	162	TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding dom	92.43
PRK08327	569	acetolactate synthase catalytic subunit; Validated	92.28
PRK06456	572	acetolactate synthase catalytic subunit; Reviewed	92.16
cd02010	177	TPP_ALS Thiamine pyrophosphate (TPP) family, Aceto	91.96
TIGR01504	588	glyox_carbo_lig glyoxylate carboligase. Glyoxylate	91.72
cd02009	175	TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) fa	91.52
PRK11866	279	2-oxoacid ferredoxin oxidoreductase subunit beta;	91.4
TIGR03394	535	indol_phenyl_DC indolepyruvate/phenylpyruvate deca	91.05
cd02015	186	TPP_AHAS Thiamine pyrophosphate (TPP) family, Acet	91.02
cd03376	235	TPP_PFOR_porB_like Thiamine pyrophosphate (TPP fam	90.54
PRK08979	572	acetolactate synthase 3 catalytic subunit; Validat	90.42
TIGR03254	554	oxalate_oxc oxalyl-CoA decarboxylase. In a number	89.88
cd02003	205	TPP_IolD Thiamine pyrophosphate (TPP) family, IolD	89.75
cd02014	178	TPP_POX Thiamine pyrophosphate (TPP) family, Pyruv	89.71
PRK07418	616	acetolactate synthase 3 catalytic subunit; Reviewe	89.7
TIGR03846	181	sulfopy_beta sulfopyruvate decarboxylase, beta sub	89.53
CHL00099	585	ilvB acetohydroxyacid synthase large subunit	89.35
PRK06276	586	acetolactate synthase catalytic subunit; Reviewed	89.15
PRK06154	565	hypothetical protein; Provisional	88.95
cd00568	168	TPP_enzymes Thiamine pyrophosphate (TPP) enzyme fa	88.89
PRK06112	578	acetolactate synthase catalytic subunit; Validated	88.75
PF09363	203	XFP_C: XFP C-terminal domain; InterPro: IPR018969	88.51
PRK11867	286	2-oxoglutarate ferredoxin oxidoreductase subunit b	88.39
PRK11864	300	2-ketoisovalerate ferredoxin oxidoreductase subuni	88.13
PRK11865	299	pyruvate ferredoxin oxidoreductase subunit beta; P	88.07
cd02013	196	TPP_Xsc_like Thiamine pyrophosphate (TPP) family,	87.92
PRK07449	568	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1	87.89
PRK09259	569	putative oxalyl-CoA decarboxylase; Validated	87.55
cd02002	178	TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC	87.5
TIGR03393	539	indolpyr_decarb indolepyruvate decarboxylase, Erwi	87.33
PLN02573	578	pyruvate decarboxylase	86.68
PRK09628	277	oorB 2-oxoglutarate-acceptor oxidoreductase subuni	84.95
cd03372	179	TPP_ComE Thiamine pyrophosphate (TPP) family, ComE	84.83
cd01481	165	vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(V	84.55
PRK08155	564	acetolactate synthase catalytic subunit; Validated	84.42
PRK06163	202	hypothetical protein; Provisional	83.55
cd02008	178	TPP_IOR_alpha Thiamine pyrophosphate (TPP) family,	83.53
PF02775	153	TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-ter	83.39
cd02007	195	TPP_DXS Thiamine pyrophosphate (TPP) family, DXS s	82.93
cd03375	193	TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-o	82.9
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	82.89
PRK06457	549	pyruvate dehydrogenase; Provisional	81.69
PRK11869	280	2-oxoacid ferredoxin oxidoreductase subunit beta;	80.51
cd02012	255	TPP_TK Thiamine pyrophosphate (TPP) family, Transk	80.29
TIGR00173	432	menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohex	80.12

>PLN02683 pyruvate dehydrogenase E1 component subunit beta

Probab=100.00  E-value=3.1e-70  Score=523.08  Aligned_cols=301  Identities=87%  Similarity=1.291  Sum_probs=277.4

Q ss_pred             ccccc-ccccccccCcccccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHH
Q 020510           18 ARIRP-VVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGF   96 (325)
Q Consensus        18 ~~~~~-~~~~~~~~~~~~~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~   96 (325)
                      -|||| ..+--+.|+...+++++|++|+++|.+++++|++++++++|++.++++|+.+++|.++|+|+||||+||+||+|
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g~~~~~~~l~~~~~P~R~~d~GIAEq~~   86 (356)
T PLN02683          7 RRTRPAAAAAARGYASAAKEMTVRDALNSALDEEMSADPKVFIMGEEVGEYQGAYKITKGLLQKYGPDRVLDTPITEAGF   86 (356)
T ss_pred             cCccccccccCcccCccccccHHHHHHHHHHHHHHhhCcCEEEEccccccccCccchhhhHHHHhCCCcEEECchhHHHH
Confidence            46777 45667889998788999999999999999999999999999988888888888999999999999999999999


Q ss_pred             HHHHHHHhccCCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCcchHHHHHHhcCCCc
Q 020510           97 TGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGL  176 (325)
Q Consensus        97 vg~A~GlA~~G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tHs~~~~a~~~~iP~~  176 (325)
                      +|+|+|||++|+|||++++++||++|+||||++++|+++||+|++.++||++++++|...+.|+||++.++++||+||||
T Consensus        87 vg~AaGlA~~G~~P~v~~~~~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~G~~~g~G~tH~~~~~a~lr~iPnl  166 (356)
T PLN02683         87 TGIGVGAAYAGLKPVVEFMTFNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCFAAWYSSVPGL  166 (356)
T ss_pred             HHHHHHHHHCCCEEEEEEehhhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeCCCCCCCCCccccCHHHHHhcCCCC
Confidence            99999999999999999988999999999999999999999999999999999988777778999988878999999999


Q ss_pred             EEEeeCCHHHHHHHHHHhHhCCCcEEEEeCccccCcccCccccccCCCccccCCceEEeeeCCcEEEEEechhHHHHHHH
Q 020510          177 KVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKA  256 (325)
Q Consensus       177 ~V~~P~d~~e~~~~l~~a~~~~~Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~A  256 (325)
                      +|++|+|+.|++.+++++++.++|+|||+++.+++..+|...+..++++.+++|+++++++|+|++||++|+++++|++|
T Consensus       167 ~V~~Pad~~e~~~~l~~a~~~~gPv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~r~G~dvtIia~G~~v~~Al~A  246 (356)
T PLN02683        167 KVLAPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFVLPIGKAKIEREGKDVTIVAFSKMVGYALKA  246 (356)
T ss_pred             EEEEeCCHHHHHHHHHHHHhCCCcEEEEEehhhccCCCCCCCCCCCccccccCCeeEEEEcCCCEEEEEccHHHHHHHHH
Confidence            99999999999999999999899999998877766554432222233567889999999999999999999999999999


Q ss_pred             HHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcCCCc
Q 020510          257 AEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPAW  318 (325)
Q Consensus       257 a~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~~~~  318 (325)
                      ++.|+++||+++|||++||||||++.|.++++++++|+|+|||+..||||++|++.+.|++|
T Consensus       247 a~~L~~~GI~v~VId~~~ikPlD~~~l~~~~~~t~~vvtvEE~~~~GGlGs~Va~~l~e~~f  308 (356)
T PLN02683        247 AEILAKEGISAEVINLRSIRPLDRDTINASVRKTNRLVTVEEGWPQHGVGAEICASVVEESF  308 (356)
T ss_pred             HHHHHhcCCCEEEEECCCCCccCHHHHHHHHhhcCeEEEEeCCCcCCCHHHHHHHHHHHhch
Confidence            99999999999999999999999999999999999999999999999999999999999875

>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated

Probab=100.00  E-value=1.1e-69  Score=514.52  Aligned_cols=279  Identities=43%  Similarity=0.778  Sum_probs=262.2

Q ss_pred             ccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCC-ceeechhhHHHHHHHHHHHhccCCeeEEe
Q 020510           35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPE-RVLDTPITEAGFTGIGVGAAYYGLKPVVE  113 (325)
Q Consensus        35 ~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~-R~i~~GIaE~~~vg~A~GlA~~G~~p~v~  113 (325)
                      +++++|++|+++|.+++++||+++++++|++..+|+++.+++|+++| |+ ||||+||+||+|+|+|+|||++|++||++
T Consensus         2 ~~~~~~~a~~~~L~~~~~~dp~iv~l~~d~~~~~g~~~~~~~f~~~f-p~~R~~n~gIaEq~~vg~AaGlA~~G~~pvv~   80 (327)
T CHL00144          2 SEVFLFEALREAIDEEMARDPRVFVIGEDVGHYGGSYKVTKGLHEKY-GDLRVLDTPIAENSFTGMAIGAAMTGLRPIVE   80 (327)
T ss_pred             CcchHHHHHHHHHHHHHhhCCCEEEEeCcccccCCchhHHHHHHHHC-CCccEeeccccHHHHHHHHHHHHHCCCEEEEE
Confidence            45789999999999999999999999999987777778889999999 77 99999999999999999999999999999


Q ss_pred             cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCcchHHHHHHhcCCCcEEEeeCCHHHHHHHHHH
Q 020510          114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKA  193 (325)
Q Consensus       114 ~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~  193 (325)
                      ++++||++|+||||++++|+++|++|++.++|++++++++.+.++|+||||.+|++|++||||+|++|+|+.|++.++++
T Consensus        81 ~~~~~f~~ra~dQi~~~~a~~~~~~gg~~~~~vv~~~~g~~~~~~G~tHs~~~ea~~~~iPgl~V~~Psd~~d~~~~l~~  160 (327)
T CHL00144         81 GMNMGFLLLAFNQISNNAGMLHYTSGGNFTIPIVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQIVACSTPYNAKGLLKS  160 (327)
T ss_pred             eehhhHHHHHHHHHHHHHHHHhhccCCCccCCEEEEecCCCCCCCCccccccHHHHHhcCCCCEEEEeCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999987655557999999988999999999999999999999999999


Q ss_pred             hHhCCCcEEEEeCccccCcccCccccccCCCccccCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEee
Q 020510          194 AIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLR  273 (325)
Q Consensus       194 a~~~~~Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~  273 (325)
                      +++.++|+|||+++.+|+.+    +.++++++.+++||++++++|+|++||++|.++++|++|++.|+++||+++|||++
T Consensus       161 a~~~~~Pv~ire~~~l~~~~----~~v~~~~~~~~~Gk~~v~~~G~ditiia~G~~v~~al~Aa~~L~~~Gi~~~VId~~  236 (327)
T CHL00144        161 AIRSNNPVIFFEHVLLYNLK----EEIPDNEYLLPLEKAEVVRPGNDITILTYSRMRHHVLQAVKVLVEKGYDPEIIDLI  236 (327)
T ss_pred             HHhCCCcEEEEEcHHhcCCC----CCCCCCCccccCCeeEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEecC
Confidence            99999999999999887642    33555667889999999999999999999999999999999999999999999999


Q ss_pred             eccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcCCCc
Q 020510          274 SIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPAW  318 (325)
Q Consensus       274 ~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~~~~  318 (325)
                      ||||||+++|.++++++++|||+|||+..||+|++|++.+.+++|
T Consensus       237 ~ikPlD~~~i~~~~~~t~~vv~vEE~~~~gGlG~~va~~l~e~~f  281 (327)
T CHL00144        237 SLKPLDLGTISKSVKKTHKVLIVEECMKTGGIGAELIAQINEHLF  281 (327)
T ss_pred             cCCCCCHHHHHHHHHhhCcEEEEECCCCCCCHHHHHHHHHHHhch
Confidence            999999999999999999999999999999999999999999875

>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]

Probab=100.00  E-value=7.6e-69  Score=487.80  Aligned_cols=280  Identities=54%  Similarity=0.850  Sum_probs=270.0

Q ss_pred             cccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEecc
Q 020510           36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM  115 (325)
Q Consensus        36 ~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~  115 (325)
                      ++++++|++++|.+.|++|++|+++++|++..+|+|++|.+|.++||++|++|++|+|.+.+|+|.|||+.|+||+++++
T Consensus         1 ~~~~~eAi~~Am~~eM~rD~~V~v~GEDVg~~GGvf~~T~GL~~kfG~~RV~DTPiaE~gi~G~avGaA~~GlrPivEiq   80 (324)
T COG0022           1 QMTMIEAINEAMDEEMERDERVVVLGEDVGVYGGVFRVTKGLQEKFGEERVIDTPIAESGIAGIAVGAALTGLRPIVEIQ   80 (324)
T ss_pred             CccHHHHHHHHHHHHHhcCCCEEEEcccccccCChhhhchhHHHHhCccceecCccchhhhHHHHHHHHHcCCcceEEEE
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCcchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhH
Q 020510          116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAI  195 (325)
Q Consensus       116 ~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~  195 (325)
                      +.+|+..++|||.|++++.+||+||+.++|++++++.|.+.+.|.+|||+.+++|.++||++|++|++|.|++.+|+.|+
T Consensus        81 f~dF~~~a~dqi~n~aAk~ryrsgG~~~~PiviR~p~G~g~~~~~~HSqs~ea~f~h~PGlKVV~PStpyDAKGLL~aAI  160 (324)
T COG0022          81 FADFIYPAFDQIVNQAAKIRYRSGGQFTVPIVIRTPNGGGIGGGAQHSQSLEALFAHIPGLKVVMPSTPYDAKGLLKAAI  160 (324)
T ss_pred             ecchhHHHHHHHHHHHHHHhhhcCCceeCCEEEEcCCCCCCCchhhccCCHHHHHhcCCCceEEecCChHHHHHHHHHHh
Confidence            99999999999999999999999999999999999987777788999999999999999999999999999999999999


Q ss_pred             hCCCcEEEEeCccccCcccCccccccCCCccccCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeec
Q 020510          196 RDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSI  275 (325)
Q Consensus       196 ~~~~Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l  275 (325)
                      ++++||++.+++.+|+.   .+.++|+++|.+++||+++.|+|+|+|||+||.|++.+++||++|+++||+++|||+|||
T Consensus       161 rd~dPViflE~k~lY~~---~~~eVP~~~Y~iPlGkA~i~reG~DvTivtyg~mv~~al~AAe~l~~~Gis~EVIDLRTl  237 (324)
T COG0022         161 RDPDPVIFLEHKRLYRS---FKGEVPEEDYTIPLGKAKIVREGSDVTIVTYGAMVHTALEAAEELEKEGISAEVIDLRTL  237 (324)
T ss_pred             cCCCCEEEEecHHHhcc---cccCCCCCCccccccceeeEecCCceEEEEechHHHHHHHHHHHHhhcCCCeEEEecccc
Confidence            99999999999999974   235778899999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcCCCc
Q 020510          276 RPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPAW  318 (325)
Q Consensus       276 ~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~~~~  318 (325)
                      +|+|.++|.++++||+|+++|||.+..+|+|++|++.++|++|
T Consensus       238 ~PlD~etIi~SvkKTgR~viV~Ea~~~~g~gaei~A~i~e~~f  280 (324)
T COG0022         238 SPLDKETIIASVKKTGRLVIVHEAPKTGGIGAEIAALIAEEAF  280 (324)
T ss_pred             CccCHHHHHHHHHhhCcEEEEEeccccCChHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999988765

>PRK09212 pyruvate dehydrogenase subunit beta; Validated

Probab=100.00  E-value=6.2e-68  Score=503.07  Aligned_cols=281  Identities=68%  Similarity=1.087  Sum_probs=264.3

Q ss_pred             ccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEec
Q 020510           35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF  114 (325)
Q Consensus        35 ~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~  114 (325)
                      ++++++++|+++|.+++++|++++++++|++.++|.|+++.+|+++|||+||||+||+||+|+++|+|||++|++||+++
T Consensus         2 ~~~~~~~a~~~~L~~~~~~d~~iv~l~~d~~~~~g~~~~~~~~~~~fgp~R~~d~gIaE~~~vg~AaGlA~~G~~Piv~~   81 (327)
T PRK09212          2 AQLTVREALRDAMQEEMERDPKVFLMGEEVGEYQGAYKVTQGLLEQFGPKRVIDTPITEHGFAGLAVGAAFAGLRPIVEF   81 (327)
T ss_pred             CcchHHHHHHHHHHHHHHhCCCEEEEcCcccccCCcchhhHHHHHHhCCCceeecchhHHHHHHHHHHHHHcCCeeEEEe
Confidence            56799999999999999999999999999988888899999999999999999999999999999999999999999999


Q ss_pred             ccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCcchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHh
Q 020510          115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAA  194 (325)
Q Consensus       115 ~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a  194 (325)
                      +++||++||||||++++|+++||+|++.++|+++++++|.++++|+||||+++++||++|||+|++|+|+.|++.+++++
T Consensus        82 ~~~~f~~ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~g~~~~~G~tH~~~~ea~~r~iP~l~V~~P~d~~e~~~~l~~a  161 (327)
T PRK09212         82 MTFNFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPNGAAARVAAQHSQCYAAWYSHIPGLKVVAPYFAADCKGLLKTA  161 (327)
T ss_pred             ehhhHHHHHHHHHHHHHHHHhhccCCCcCccEEEEeCCCCCCCCCcccccCHHHHHhcCCCCEEEeeCCHHHHHHHHHHH
Confidence            97799999999999999999999999999999999988887889999999889999999999999999999999999999


Q ss_pred             HhCCCcEEEEeCccccCcccCccccccCCCccccCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeee
Q 020510          195 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRS  274 (325)
Q Consensus       195 ~~~~~Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~  274 (325)
                      ++.++|+||++++..|..    .++++++++.+++||++++++|+|++||+||+++..|++|++.|+++|++++|||+++
T Consensus       162 ~~~~~Pv~i~~~~~~~~~----~~~~~~~~~~~~~Gk~~vl~~G~di~iva~G~~~~~a~eAa~~L~~~Gi~v~vi~~~~  237 (327)
T PRK09212        162 IRDPNPVIFLENEILYGH----SHEVPEEEESIPIGKAAILREGSDVTIVTFSIQVKLALEAAELLEKEGISVEVIDLRT  237 (327)
T ss_pred             HhCCCcEEEEEchhhcCC----CCCCCCCCccccCCeeEEEEeCCCEEEEEccHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence            999999999998765542    2334555677899999999999999999999999999999999999999999999999


Q ss_pred             ccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcCCCcc
Q 020510          275 IRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPAWL  319 (325)
Q Consensus       275 l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~~~~~  319 (325)
                      |+|||++.|.++++++++|+|+|||+..||+|++|++.+.++++.
T Consensus       238 l~Pld~~~i~~~~~~~~~vv~vEe~~~~gGlg~~la~~l~~~~~~  282 (327)
T PRK09212        238 LRPLDTETIIESVKKTNRLVVVEEGWPFAGVGAEIAALIMKEAFD  282 (327)
T ss_pred             CCCCCHHHHHHHHHhCCeEEEEcCCCCCCCHHHHHHHHHHHhCcc
Confidence            999999999999999999999999999999999999999988654

>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.2e-68  Score=481.63  Aligned_cols=264  Identities=28%  Similarity=0.416  Sum_probs=241.7

Q ss_pred             ccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEec
Q 020510           35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF  114 (325)
Q Consensus        35 ~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~  114 (325)
                      ...++|++|+++|.++.++|++||++++|+..|+.+    ..|+++| ||||+|+||+||+|+|+|+|+|++|++||+++
T Consensus         5 ~~~~~R~~~g~~L~~l~~~~~diVvl~ADl~~St~~----~~f~~~f-PdR~~NvGIaEQ~mvg~AAGLA~~Gk~Pfv~t   79 (312)
T COG3958           5 NTESLRKVYGETLAELGRKNSDIVVLDADLSSSTKT----GYFAKEF-PDRFFNVGIAEQDMVGTAAGLALAGKKPFVST   79 (312)
T ss_pred             cchHHHHHHHHHHHHHHhcCCCEEEEecccccccch----hHHHHhC-chhheecchHHHHHHHHHHHHHhcCCCceeec
Confidence            467899999999999999999999999999876654    7899999 99999999999999999999999999999999


Q ss_pred             ccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC-CCCCC-CCCCcchHHH--HHHhcCCCcEEEeeCCHHHHHHH
Q 020510          115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAG-VGAQHSHCYA--AWYASVPGLKVLSPYSSEDARGL  190 (325)
Q Consensus       115 ~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~~g-~G~tHs~~~~--a~~~~iP~~~V~~P~d~~e~~~~  190 (325)
                      |+.|.+.|+||||||++||.        +++|.+++.+ |.+.+ +|+|| |++|  ++||.+|||+|++|+|+.+++.+
T Consensus        80 fa~F~s~Ra~EQir~~iay~--------~lnVKiv~t~~G~t~g~dG~sH-q~~EDiaimR~lpn~~V~~P~D~v~~~~i  150 (312)
T COG3958          80 FAAFLSRRAWEQIRNSIAYN--------NLNVKIVATHAGVTYGEDGSSH-QALEDIAIMRGLPNMTVIAPADAVETRAI  150 (312)
T ss_pred             hHHHHHHHHHHHHHHHhhhc--------cCCeEEEEecCCcccCCCCccc-hhHHHHHHHhcCCCceEEccCcHHHHHHH
Confidence            98877779999999999984        6777777654 77765 99999 7554  99999999999999999999999


Q ss_pred             HHHhHhCCCcEEEEeCccccCcccCccccccCCCccccCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEE
Q 020510          191 LKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVI  270 (325)
Q Consensus       191 l~~a~~~~~Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi  270 (325)
                      +.++.++++|+|+|..|.    ++|  ..++..+|.|++||++++++|+|++||++|.|+++|++||+.|+++||++.||
T Consensus       151 ~~~~~~~~GP~Y~Rl~R~----~~p--~~~~~~~~~F~iGka~vLrdG~D~tiiA~G~mv~~al~AA~~L~~~GIsa~Vi  224 (312)
T COG3958         151 LDQIADYKGPVYMRLGRG----KVP--VVVDEGGYTFEIGKANVLRDGSDLTIIATGVMVAEALEAAEILKKEGISAAVI  224 (312)
T ss_pred             HHHHHhcCCCEEEEecCC----CCC--ceecCCCceEeccceeEeecCCceEEEecCcchHHHHHHHHHHHhcCCCEEEE
Confidence            999999999999998774    333  22333468999999999999999999999999999999999999999999999


Q ss_pred             EeeeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcCCCc
Q 020510          271 NLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPAW  318 (325)
Q Consensus       271 ~~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~~~~  318 (325)
                      |+.||||+|++.+.++++++++|||+|||+..||||+.|++.|.|++.
T Consensus       225 ~m~tIKPiD~~~i~~~A~~t~~IvT~EeHsi~GGlGsaVAEvlse~~p  272 (312)
T COG3958         225 NMFTIKPIDEQAILKAARETGRIVTAEEHSIIGGLGSAVAEVLSENGP  272 (312)
T ss_pred             ecCccCCCCHHHHHHHHhhcCcEEEEecceeecchhHHHHHHHHhcCC
Confidence            999999999999999999999999999999999999999999999876

>PRK11892 pyruvate dehydrogenase subunit beta; Provisional

Probab=100.00  E-value=8.3e-67  Score=512.97  Aligned_cols=281  Identities=69%  Similarity=1.082  Sum_probs=263.9

Q ss_pred             cccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEe
Q 020510           34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVE  113 (325)
Q Consensus        34 ~~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~  113 (325)
                      ++++++|++|+++|.+++++|++++++++|++.++|.|+++.+|.++|||+||||+||+||+|+|+|+|||++|+|||++
T Consensus       139 ~~~~~~r~a~~~al~~~~~~d~~vv~i~~Dv~~~~ga~~~t~~l~~~fgp~R~id~gIaEq~~vg~AaGlA~~G~rPiv~  218 (464)
T PRK11892        139 MVTMTVREALRDAMAEEMRRDEDVFVMGEEVAEYQGAYKVTQGLLQEFGARRVIDTPITEHGFAGIGVGAAFAGLKPIVE  218 (464)
T ss_pred             ccchHHHHHHHHHHHHHHhhCcCEEEEeCCccccCCccccchHHHHHhCccceeecCccHHHHHHHHHHHHhCCCEEEEE
Confidence            36778999999999999999999999999999888888888999999999999999999999999999999999999999


Q ss_pred             cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCcchHHHHHHhcCCCcEEEeeCCHHHHHHHHHH
Q 020510          114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKA  193 (325)
Q Consensus       114 ~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~  193 (325)
                      ++++||++|+||||+|++|+++||+|+++++||++++++|...+.|++|+++++++|++||||+|++|+|+.|++.++++
T Consensus       219 ~~~~~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~~G~hhs~~d~a~~~~iPgl~V~~P~d~~d~~~ll~~  298 (464)
T PRK11892        219 FMTFNFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAARVAAQHSQDYAAWYSHIPGLKVVAPYSAADAKGLLKA  298 (464)
T ss_pred             EehHHHHHHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCCCCCccccCHHHHHhhCCCCEEEEeCCHHHHHHHHHH
Confidence            99899999999999999999999999999999999998877666889898999999999999999999999999999999


Q ss_pred             hHhCCCcEEEEeCccccCcccCccccccC-CCccccCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEe
Q 020510          194 AIRDPDPVVFLENELLYGESFPVSAEVLD-SSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINL  272 (325)
Q Consensus       194 a~~~~~Pv~ir~~~~l~~~~~p~~~~~~~-~~~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~  272 (325)
                      +++.++|+|+++++.+|++..    +++. +++.+++||++++++|+|++||++|.+++.|++|++.|+++||+++|||+
T Consensus       299 ai~~~~Pv~ile~~~ry~~~~----~vp~~~~~~~~~Gka~v~r~G~DvtIva~G~~v~~Al~Aa~~L~~~GI~~~VIdl  374 (464)
T PRK11892        299 AIRDPNPVIFLENEILYGQSF----DVPKLDDFVLPIGKARIHREGKDVTIVSFSIGMTYALKAAEELAKEGIDAEVIDL  374 (464)
T ss_pred             HhhCCCcEEEEechhhcCCCC----CCCCcCCccccCceEEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEEC
Confidence            999999999999887776532    1222 45778899999999999999999999999999999999999999999999


Q ss_pred             eeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcCCCc
Q 020510          273 RSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPAW  318 (325)
Q Consensus       273 ~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~~~~  318 (325)
                      +||||||+++|.++++++++|||+|||+..||||++|++.+.+++|
T Consensus       375 ~tlkPlD~~~i~~sv~kt~~vvtvEE~~~~gGlG~~va~~l~e~~f  420 (464)
T PRK11892        375 RTIRPMDTETIVESVKKTNRLVTVEEGWPQSGVGAEIAARVMEQAF  420 (464)
T ss_pred             CCCCcCCHHHHHHHHHhcCeEEEEeCCCcCCcHHHHHHHHHHHhCc
Confidence            9999999999999999999999999999999999999999999876

>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional

Probab=100.00  E-value=1e-65  Score=491.83  Aligned_cols=283  Identities=58%  Similarity=0.932  Sum_probs=262.5

Q ss_pred             ccccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEE
Q 020510           33 AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVV  112 (325)
Q Consensus        33 ~~~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v  112 (325)
                      .+++++++++|+++|.+++++|++++++++|++.++++++.+.+|+++|||+||||+||+||+|+++|+|||++|++||+
T Consensus        31 ~~~~~~~~~~~~~~L~~~~~~d~~iv~l~~D~~~~G~~~~~~~~f~~~fgP~R~id~GIaEq~~vg~AaGlA~~G~~Pvv  110 (355)
T PTZ00182         31 ATVKMNVREAINSALDEELARDPKVFVLGEDVAQYGGVYKCTKGLLDKYGPDRVFDTPITEQGFAGFAIGAAMNGLRPIA  110 (355)
T ss_pred             cccchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCchhhhHHHHHHhCCCceeecCccHHHHHHHHHHHHhCCCEEEE
Confidence            34688999999999999999999999999999877777887899999999999999999999999999999999999999


Q ss_pred             ecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCcchHHHHHHhcCCCcEEEeeCCHHHHHHHHH
Q 020510          113 EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLK  192 (325)
Q Consensus       113 ~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~  192 (325)
                      ++++++|++|++|||++++|+++|++|+++++|+++++++|..+++|+||+|.++++|+++|||+|++|+|+.|++.+++
T Consensus       111 ~~~fa~Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~g~~G~tHs~~~ea~lr~iPn~~V~~Psd~~e~~~~l~  190 (355)
T PTZ00182        111 EFMFADFIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVGHGGAYHSQSFEAYFAHVPGLKVVAPSDPEDAKGLLK  190 (355)
T ss_pred             EechhhHHHHHHHHHHHHHHHhhcccCCCccCCEEEEeCCCCCCCCCCcccchHHHHHhcCCCCEEEeeCCHHHHHHHHH
Confidence            98768889999999999999999999999999999998766667799999999999999999999999999999999999


Q ss_pred             HhHhCCCcEEEEeCccccCcccCccccccCCCccccCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEe
Q 020510          193 AAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINL  272 (325)
Q Consensus       193 ~a~~~~~Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~  272 (325)
                      ++++.++|+||++++.+++...+   .++++++.+++||++++++|+|++||++|+++..+++|++.|+++|++++|||+
T Consensus       191 ~a~~~~~P~~i~~p~~l~r~~~~---~~~~~~~~~~~Gk~~vl~~G~di~Iia~Gs~~~~aleAa~~L~~~Gi~v~vI~~  267 (355)
T PTZ00182        191 AAIRDPNPVVFFEPKLLYRESVE---VVPEADYTLPLGKAKVVREGKDVTIVGYGSQVHVALKAAEELAKEGISCEVIDL  267 (355)
T ss_pred             HHHhCCCcEEEEeehHHhCCCCC---CCCcccccccCCcceEecCCCCEEEEEeCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence            99999999999999887754322   223445778899999999999999999999999999999999999999999999


Q ss_pred             eeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcCCCc
Q 020510          273 RSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPAW  318 (325)
Q Consensus       273 ~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~~~~  318 (325)
                      ++++|||++.|.++++++++|||+|||+..||||++|++.+.|++|
T Consensus       268 ~~l~Pld~e~i~~~~~~~~~IvvvEE~~~~GGlG~~Va~~l~e~~~  313 (355)
T PTZ00182        268 RSLRPWDRETIVKSVKKTGRCVIVHEAPPTCGIGAEIAAQIMEDCF  313 (355)
T ss_pred             eeCCCCCHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999999999999874

>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion]

Probab=100.00  E-value=8.4e-62  Score=432.25  Aligned_cols=285  Identities=70%  Similarity=1.109  Sum_probs=275.0

Q ss_pred             cccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEe
Q 020510           34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVE  113 (325)
Q Consensus        34 ~~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~  113 (325)
                      .+.++.|+|+..+|.+.|++|++++++++|++.++|+|+++++|.+|||+.|++|++|+|.+..|+|.|+|+.|+||+++
T Consensus        32 ~~~mtvreALn~amdEEm~rD~~VfvmGEeV~qy~GaykvtkGL~~K~G~~RV~DTPItE~gFtG~avGAA~~GLrPi~e  111 (359)
T KOG0524|consen   32 AKEMTVREALNQAMDEEMDRDPRVFVMGEEVGQYGGAYKVTKGLLDKFGDKRVLDTPITEMGFTGIAVGAAMAGLRPICE  111 (359)
T ss_pred             ceeeeHHHHHHHHHHHHhccCCcEEEechhhhhcCCeeehhhhHHHhcCCceeecCcchhcccchhhHhHHHhCcchhhh
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCcchHHHHHHhcCCCcEEEeeCCHHHHHHHHHH
Q 020510          114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKA  193 (325)
Q Consensus       114 ~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~  193 (325)
                      .+.-.|++.++|||.|++++.+|||||++++|+++++++|...+.|.+|||++.+|+.++||++|++|.+++|++.+++.
T Consensus       112 fMtfnFsmqAid~IiNsaakt~YmSgG~~~~piVfRGPnG~~~gv~AqHSQ~f~~wy~siPGlkvvapysaedakGLlKa  191 (359)
T KOG0524|consen  112 FMTFNFSMQAIDQIINSAAKTHYMSGGQQPVPIVFRGPNGAAAGVAAQHSQDFASWYGSIPGLKVVAPYSAEDAKGLLKA  191 (359)
T ss_pred             hhcchhHHHHHHHHHHHHHHHhcccCCceeccEEEeCCCCcccchhhhhhhhhHHHhccCCCceEeccCChhhhhhHHHH
Confidence            98778999999999999999999999999999999999999899999999999999999999999999999999999999


Q ss_pred             hHhCCCcEEEEeCccccCcccCccccccCCCccccCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEee
Q 020510          194 AIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLR  273 (325)
Q Consensus       194 a~~~~~Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~  273 (325)
                      |+++++||++.++..+|+..+++.++....+|..++||+++.|+|+|++|+++..++..+++||+.|.++|++++|||++
T Consensus       192 AIRd~NPVV~lEnelLYg~~f~i~~E~ls~~fv~p~gkAkier~G~~iTivt~Sr~v~~~leAA~~L~~~Gvs~EVInlr  271 (359)
T KOG0524|consen  192 AIRDENPVVFLENELLYGLSFEIPEEALSKDFVLPLGKAKIEREGTHITIVTYSRMVGHCLEAAETLVAKGVSAEVINLR  271 (359)
T ss_pred             hccCCCCeEEEechhhcCCCccCChhhcCcceeeeccceeeeecCCceEEEEechhHHHHHHHHHHHHhcCCCceeEeee
Confidence            99999999999999999988877666556789999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcCCCc
Q 020510          274 SIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPAW  318 (325)
Q Consensus       274 ~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~~~~  318 (325)
                      +|+|||.++|.++++||.++++||+.++.+|+|++|++.++|+.|
T Consensus       272 SirP~D~~tI~~Sv~KT~~lvtVe~~~p~~gigaei~A~i~E~~f  316 (359)
T KOG0524|consen  272 SIRPFDIETIGASVKKTNRLVTVEEGWPQFGIGAEICAQIMENAF  316 (359)
T ss_pred             ccCcccHHHHHHHHhhhceEEEEeccccccchhHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998644

>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase

Probab=100.00  E-value=9.2e-59  Score=469.60  Aligned_cols=265  Identities=20%  Similarity=0.299  Sum_probs=233.4

Q ss_pred             ccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEec
Q 020510           35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF  114 (325)
Q Consensus        35 ~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~  114 (325)
                      ...+++++|+++|.+++++|++||++++|+...++    +.+|+++| |+||||+|||||+|+++|+|||..|++||+++
T Consensus       379 ~~~s~~~~f~~aL~~la~~D~~Iv~Itadm~~gtg----l~~f~~~f-PdRffDvGIAEQhaVt~AAGLA~~G~kPvv~i  453 (701)
T PLN02225        379 DRRTYSDCFVEALVMEAEKDRDIVVVHAGMEMDAS----LITFQERF-PDRFFNVGMAEQHAVTFSAGLSSGGLKPFCII  453 (701)
T ss_pred             CCcCHHHHHHHHHHHHHhhCCCEEEEeCCccCccc----HHHHHHHc-cccccccCccHHHHHHHHHHHHHCCCEEEEEe
Confidence            35689999999999999999999999999864222    38999999 99999999999999999999999999999999


Q ss_pred             ccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC-CCCCCCCCCcch-HHHHHHhcCCCcEEEeeCCHHHHHHHHH
Q 020510          115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGVGAQHSH-CYAAWYASVPGLKVLSPYSSEDARGLLK  192 (325)
Q Consensus       115 ~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~~g~G~tHs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~  192 (325)
                      | +.|++||||||++++|++        +.||+++... |..+.+|+||++ .+.++||+||||+|++|+|++|++.+++
T Consensus       454 y-stFlqRAyDQI~~Dval~--------~lpV~~vid~aGlvg~DG~TH~g~~Dia~lr~IPnm~V~aPsD~~El~~mL~  524 (701)
T PLN02225        454 P-SAFLQRAYDQVVHDVDRQ--------RKAVRFVITSAGLVGSDGPVQCGAFDIAFMSSLPNMIAMAPADEDELVNMVA  524 (701)
T ss_pred             e-hhHHHHHHHHHHHHHHhh--------cCCceEEEECCccCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHH
Confidence            8 678999999999999984        6677776654 555569999965 4459999999999999999999999999


Q ss_pred             HhHh-CCCcEEEEeCccccCcccCccccccCCCccccCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEE
Q 020510          193 AAIR-DPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVIN  271 (325)
Q Consensus       193 ~a~~-~~~Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~  271 (325)
                      +++. .++|+|||.+|..+..    .+...++++.+++||++++++|+|++||++|.+++.|++|++.|+++||+++|||
T Consensus       525 ~A~~~~~gPv~IR~pRg~~~~----~~~~~~~~~~~~iGK~~vlreG~dvtIia~G~mv~~Al~AA~~L~~~GI~vtVId  600 (701)
T PLN02225        525 TAAYVTDRPVCFRFPRGSIVN----MNYLVPTGLPIEIGRGRVLVEGQDVALLGYGAMVQNCLHAHSLLSKLGLNVTVAD  600 (701)
T ss_pred             HHHhcCCCCEEEEecccccCC----CCcCCCCCccccCcceEEEEeCCCEEEEeccHHHHHHHHHHHHHHhcCCCEEEEe
Confidence            9885 5689999998763211    1100122467889999999999999999999999999999999999999999999


Q ss_pred             eeeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcCCCc
Q 020510          272 LRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPAW  318 (325)
Q Consensus       272 ~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~~~~  318 (325)
                      ++++||||++.|.++++++++|||+|||.. ||||+.|++++.++++
T Consensus       601 lr~ikPLD~e~I~~~~~k~~~vVTvEE~~~-GG~Gs~Va~~l~~~~~  646 (701)
T PLN02225        601 ARFCKPLDIKLVRDLCQNHKFLITVEEGCV-GGFGSHVAQFIALDGQ  646 (701)
T ss_pred             cCCCCCCCHHHHHHHHhhcCeEEEEcCCCC-CchHHHHHHHHHhcCC
Confidence            999999999999999999999999999997 9999999999998875

>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]

Probab=100.00  E-value=1.5e-56  Score=438.25  Aligned_cols=267  Identities=25%  Similarity=0.361  Sum_probs=239.9

Q ss_pred             ccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEec
Q 020510           35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF  114 (325)
Q Consensus        35 ~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~  114 (325)
                      .+.||.++|++.|.+++++|++||.+++  ++..|+ ++ .+|+++| |+||||+|||||++|++|+|||..|++|++++
T Consensus       314 ~~~sys~vf~~~L~~~a~~d~~ivaITa--AM~~gt-GL-~~F~~~f-P~R~fDVGIAEQHAVT~AAGlA~~G~kPvvaI  388 (627)
T COG1154         314 SAPSYTKVFGDTLCELAAKDEKIVAITA--AMPEGT-GL-VKFSKKF-PDRFFDVGIAEQHAVTFAAGLAAEGMKPVVAI  388 (627)
T ss_pred             CCCCHHHHHHHHHHHHHhhCCCeEEEec--CCCCCC-Ch-HHHHHhC-chhheehhhhHHHHHHHHHHHHhCCCCCEEEE
Confidence            5677999999999999999999999999  455565 55 7999999 99999999999999999999999999999998


Q ss_pred             ccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC-CCCCCCCCCcch-HHHHHHhcCCCcEEEeeCCHHHHHHHHH
Q 020510          115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGVGAQHSH-CYAAWYASVPGLKVLSPYSSEDARGLLK  192 (325)
Q Consensus       115 ~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~~g~G~tHs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~  192 (325)
                      | |+|+||||||+.+|+|.        +|+||++.... |..+.+|.||+. .|.++||+||||+|++|+|.+|++.+++
T Consensus       389 Y-STFLQRAYDQliHDvai--------qnLPV~faIDRAGivG~DG~TH~G~fDls~l~~iPnmvi~aP~de~el~~ml~  459 (627)
T COG1154         389 Y-STFLQRAYDQLIHDVAI--------QNLPVTFAIDRAGIVGADGPTHQGLFDLSFLRCIPNMVIMAPRDEEELRQMLY  459 (627)
T ss_pred             e-cHHHHHHHHHHHHHHHh--------ccCCeEEEEecCcccCCCCCccccHHHHHHHhcCCCcEEecCCCHHHHHHHHH
Confidence            7 89999999999999997        79999998874 777889999965 4459999999999999999999999999


Q ss_pred             HhHhCC-CcEEEEeCccccCcccCccccccCCCccccCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEE
Q 020510          193 AAIRDP-DPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVIN  271 (325)
Q Consensus       193 ~a~~~~-~Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~  271 (325)
                      +++..+ +|+.||.||..    .+. .....+...+++|+++++++|.|++||++|.++..|++|++.|.+.||+++|||
T Consensus       460 ta~~~~~gP~AiRyPrg~----~~~-~~~~~~~~~~~~Gk~~i~~~G~~vail~~G~~~~~al~vae~L~~~Gi~~TVvd  534 (627)
T COG1154         460 TALAQDDGPVAIRYPRGN----GVG-VILTPELEPLEIGKGELLKEGEKVAILAFGTMLPEALKVAEKLNAYGISVTVVD  534 (627)
T ss_pred             HHHhcCCCCeEEEecCCC----CCC-CCcccccccccccceEEEecCCcEEEEecchhhHHHHHHHHHHHhcCCCcEEEc
Confidence            999987 79999987651    110 011111345789999999999999999999999999999999999999999999


Q ss_pred             eeeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcCCCccc
Q 020510          272 LRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPAWLI  320 (325)
Q Consensus       272 ~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~~~~~~  320 (325)
                      ++++||+|++.|++++++++.+||+||+...||+||.|+++|.++++..
T Consensus       535 ~rfvkPlD~~ll~~La~~h~~~vtlEe~~~~GG~Gs~v~efl~~~~~~~  583 (627)
T COG1154         535 PRFVKPLDEALLLELAKSHDLVVTLEENVVDGGFGSAVLEFLAAHGILV  583 (627)
T ss_pred             CeecCCCCHHHHHHHHhhcCeEEEEecCcccccHHHHHHHHHHhcCCCC
Confidence            9999999999999999999999999999999999999999999988754

>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase

Probab=100.00  E-value=3.4e-56  Score=453.76  Aligned_cols=264  Identities=24%  Similarity=0.373  Sum_probs=237.1

Q ss_pred             ccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEec
Q 020510           35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF  114 (325)
Q Consensus        35 ~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~  114 (325)
                      ...+++++|+++|.+++++|++||++++|+..+++    +.+|+++| |+||||+||+||+|+++|+|||+.|++||+++
T Consensus       308 ~~~~~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~----~~~f~~~f-P~R~~d~GIaEq~~vg~AaGlA~~G~~Pvv~~  382 (617)
T TIGR00204       308 ALPSYSKIFSDTLCELAKKDNKIVGITPAMPEGSG----LDKFSRKF-PDRYFDVAIAEQHAVTFAAGMAIEGYKPFVAI  382 (617)
T ss_pred             CCccHHHHHHHHHHHHHhhCcCEEEEECCccCCcC----hHHHHHHC-ccccccCCccHHHHHHHHHHHHHCCCEEEEEe
Confidence            34689999999999999999999999999854333    38999999 99999999999999999999999999999999


Q ss_pred             ccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC-CCCCCCCCCcchHHH-HHHhcCCCcEEEeeCCHHHHHHHHH
Q 020510          115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGVGAQHSHCYA-AWYASVPGLKVLSPYSSEDARGLLK  192 (325)
Q Consensus       115 ~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~~g~G~tHs~~~~-a~~~~iP~~~V~~P~d~~e~~~~l~  192 (325)
                      | +.|++||||||++++|+        +++||++++++ |..+++|+||++..+ ++|+++|||+|++|+|+.|++.+++
T Consensus       383 ~-a~Fl~ra~dQi~~~~a~--------~~lpV~i~~~~~G~~g~dG~tH~~~~dia~lr~iPgl~V~~Psd~~e~~~~l~  453 (617)
T TIGR00204       383 Y-STFLQRAYDQVVHDVCI--------QKLPVLFAIDRAGIVGADGETHQGAFDISYLRCIPNMVIMAPSDENELRQMLY  453 (617)
T ss_pred             c-HHHHHHHHHHHHHHHHh--------cCCCEEEEEECCCcCCCCCcccccchHHHHHhcCCCcEEEeeCCHHHHHHHHH
Confidence            6 77889999999999997        58999999874 666668999976554 9999999999999999999999999


Q ss_pred             HhHhCC-CcEEEEeCccccCcccCccccccCCCccccCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEE
Q 020510          193 AAIRDP-DPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVIN  271 (325)
Q Consensus       193 ~a~~~~-~Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~  271 (325)
                      ++++.+ +|+|+|++|..+..    . .....++.+++|+++++++|+|++||++|.+++.|++|++.|+++||+++|||
T Consensus       454 ~a~~~~~~Pv~ir~~r~~~~~----~-~~~~~~~~~~~Gk~~vlr~G~dvtIva~G~~v~~al~Aa~~L~~~gi~~~VId  528 (617)
T TIGR00204       454 TGYHYDDGPIAVRYPRGNAVG----V-ELTPEPEKLPIGKSEVLRKGEKILILGFGTLVPEALEVAESLNEKGIEATVVD  528 (617)
T ss_pred             HHHhCCCCCEEEEEccCCcCC----c-ccCCccccccCCceEEEEcCCCEEEEEcCHHHHHHHHHHHHHHhcCCCEEEEe
Confidence            999965 99999998763311    0 11123467889999999999999999999999999999999999999999999


Q ss_pred             eeeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcCCC
Q 020510          272 LRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPA  317 (325)
Q Consensus       272 ~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~~~  317 (325)
                      ++||+|||++.|.++++++++|||+|||+..||+|++|+++|.+++
T Consensus       529 ~~~lkPlD~e~i~~~~~k~~~vvtvEE~~~~GGlGs~v~~~l~~~~  574 (617)
T TIGR00204       529 ARFVKPLDEELILEIAASHEKLVTVEENAIMGGAGSAVLEFLMDQN  574 (617)
T ss_pred             cCcCCcCCHHHHHHHHhhcCeEEEEECCCCccChHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999886

DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).

>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase

Probab=100.00  E-value=5.9e-56  Score=448.46  Aligned_cols=265  Identities=23%  Similarity=0.344  Sum_probs=233.1

Q ss_pred             cccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEecc
Q 020510           36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM  115 (325)
Q Consensus        36 ~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~  115 (325)
                      .++++++|+++|.+++++|++||++++|+..  ++ + ...|+++| |+||||+||+||+|+++|+|||++|+|||+++|
T Consensus       356 ~~sy~~af~~aL~e~a~~D~~Iv~l~adm~g--gt-~-~~~f~~~f-PdR~fdvGIAEq~~Vg~AaGLA~~G~rPvv~~f  430 (641)
T PLN02234        356 TQSYTSCFVEALIAEAEADKDIVAIHAAMGG--GT-M-LNLFESRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCTIY  430 (641)
T ss_pred             CCCHHHHHHHHHHHHHHHCcCEEEEECCCCC--Cc-c-hHHHHHHc-cccccCCCcCHHHHHHHHHHHHHCCCeEEEEeh
Confidence            3689999999999999999999999999853  33 2 37899999 999999999999999999999999999999996


Q ss_pred             cccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC-CCCCCCCCCcchHH-HHHHhcCCCcEEEeeCCHHHHHHHHHH
Q 020510          116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGVGAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKA  193 (325)
Q Consensus       116 ~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~~g~G~tHs~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~  193 (325)
                       +.|++||||||++++|+        +++||+++... |..+++|+||++.. .+++|++|||+|++|+|+.|++.++++
T Consensus       431 -s~Fl~RA~DQI~~dva~--------~~lpV~~v~~~aG~~g~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~  501 (641)
T PLN02234        431 -SSFMQRAYDQVVHDVDL--------QKLPVRFAIDRAGLMGADGPTHCGAFDVTFMACLPNMIVMAPSDEAELFNMVAT  501 (641)
T ss_pred             -HHHHHHHHHHHHHHHhh--------cCCCEEEEEeCCccCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence             77889999999999996        68999888743 65566999997754 499999999999999999999999999


Q ss_pred             hHhC-CCcEEEEeCccccCcccCccccccC--CCccccCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEE
Q 020510          194 AIRD-PDPVVFLENELLYGESFPVSAEVLD--SSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVI  270 (325)
Q Consensus       194 a~~~-~~Pv~ir~~~~l~~~~~p~~~~~~~--~~~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi  270 (325)
                      ++.. ++|+|+|++|..+...     .++.  ..+.+++|+++++++|+|++||++|+++++|++|++.|+++||+++||
T Consensus       502 a~~~~~~Pv~ir~~R~~~~~~-----~~~~~~~~~~~~iGk~~vlreG~dvtIva~G~~v~~Al~AA~~L~~~GI~v~VI  576 (641)
T PLN02234        502 AAAIDDRPSCFRYHRGNGIGV-----SLPPGNKGVPLQIGRGRILRDGERVALLGYGSAVQRCLEAASMLSERGLKITVA  576 (641)
T ss_pred             HHhCCCCCEEEEeeccccccc-----ccCCCCccccccCceEEEEEeCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEE
Confidence            8865 5899999988743210     1111  134578999999999999999999999999999999999999999999


Q ss_pred             EeeeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcCCCccc
Q 020510          271 NLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPAWLI  320 (325)
Q Consensus       271 ~~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~~~~~~  320 (325)
                      |+++++|||++.+.+++++++.|||+|||.. ||||++|++.|++++++-
T Consensus       577 d~rsikPlD~~~i~sl~k~~~~vVt~Ee~~~-GG~Gs~Va~~l~e~~~~~  625 (641)
T PLN02234        577 DARFCKPLDVALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLD  625 (641)
T ss_pred             ecCCcCCCCHHHHHHHHHhCCEEEEECCCCC-CcHHHHHHHHHHHcCCCC
Confidence            9999999999999888878888999999987 999999999999998653

>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase

Probab=100.00  E-value=6.8e-55  Score=444.05  Aligned_cols=263  Identities=23%  Similarity=0.351  Sum_probs=232.2

Q ss_pred             cccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEecc
Q 020510           36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM  115 (325)
Q Consensus        36 ~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~  115 (325)
                      ..++.++|+++|.+++++|++||++++|.+   +.+++ .+|+++| |+||||+||+||+|+++|+|||+.|++||+++|
T Consensus       355 ~~~~s~a~~~aL~~~a~~d~~vv~ita~m~---g~~gl-~~f~~~f-P~R~fdvGIAEq~~vg~AaGLA~~G~kPvv~~f  429 (677)
T PLN02582        355 TQSYTTYFAEALIAEAEVDKDVVAIHAAMG---GGTGL-NLFARRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIY  429 (677)
T ss_pred             CcCHHHHHHHHHHHHHccCCCEEEEeCCCC---Cccch-HHHHHHc-CccccccCcCHHHHHHHHHHHHHCCCeEEEEec
Confidence            357999999999999999999999999875   33455 6899999 999999999999999999999999999999996


Q ss_pred             cccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC-CCCCCCCCCcchHH-HHHHhcCCCcEEEeeCCHHHHHHHHHH
Q 020510          116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGVGAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKA  193 (325)
Q Consensus       116 ~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~~g~G~tHs~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~  193 (325)
                       +.|++||||||++++|+        +++||+++..+ |..+++|+||++.+ .++||++|||+|++|+|++|++.++++
T Consensus       430 -s~Fl~RA~DQI~~dval--------~~lpVv~v~~~aG~vg~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~  500 (677)
T PLN02582        430 -SSFLQRGYDQVVHDVDL--------QKLPVRFAMDRAGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELFHMVAT  500 (677)
T ss_pred             -HHHHHHHHHHHHHHHHh--------cCCCEEEEEECCCcccCCCCcccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence             77889999999999997        68999999874 66667999996644 589999999999999999999999999


Q ss_pred             hHhC-CCcEEEEeCccccCcccCccccccC--CCccccCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEE
Q 020510          194 AIRD-PDPVVFLENELLYGESFPVSAEVLD--SSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVI  270 (325)
Q Consensus       194 a~~~-~~Pv~ir~~~~l~~~~~p~~~~~~~--~~~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi  270 (325)
                      +++. ++|+|||.+|...    +. ..+++  .++.+++|+++++++|+|++||++|++++.|++|++.|+++||+++||
T Consensus       501 al~~~~gPv~IR~pr~~~----~~-~~~~~~~~~~~~~iGk~~vlr~G~dvtIva~G~~v~~Al~Aa~~L~~~GI~~~VI  575 (677)
T PLN02582        501 AAAIDDRPSCFRYPRGNG----IG-VQLPPNNKGIPIEVGKGRILLEGERVALLGYGTAVQSCLAAASLLERHGLSATVA  575 (677)
T ss_pred             HHhCCCCCEEEEEecCCC----CC-cccCCcccccccccCceEEEEeCCCEEEEeecHHHHHHHHHHHHHHhcCCCEEEE
Confidence            9975 5999999887621    00 01111  134578999999999999999999999999999999999999999999


Q ss_pred             EeeeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcCCCc
Q 020510          271 NLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPAW  318 (325)
Q Consensus       271 ~~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~~~~  318 (325)
                      |++|+||||++.|.+++++++.|||+|||.. ||+|+.|++++.+++.
T Consensus       576 d~~~lkPlD~~~i~~~~k~~~~vVtvEe~~~-GG~Gs~va~~l~~~~~  622 (677)
T PLN02582        576 DARFCKPLDRALIRSLAKSHEVLITVEEGSI-GGFGSHVAQFMALDGL  622 (677)
T ss_pred             EcCcCCCCCHHHHHHHhhhCCEEEEECCCCC-CcHHHHHHHHHHhcCC
Confidence            9999999999999888878888999999998 9999999999998764

>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional

Probab=100.00  E-value=2.4e-54  Score=437.77  Aligned_cols=261  Identities=22%  Similarity=0.270  Sum_probs=229.6

Q ss_pred             cccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEecc
Q 020510           36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM  115 (325)
Q Consensus        36 ~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~  115 (325)
                      +.+++++|+++|.+++++|++++++++|+..   .+++ .+|+++| |+||||+||+||+|+++|+|||+.|++||+.+|
T Consensus       277 ~~~~~~~~~~~l~~~~~~d~~i~~i~~~~~~---~~~~-~~f~~~f-P~R~id~GIaEq~~v~~AaGlA~~G~~Pvv~~f  351 (581)
T PRK12315        277 GESYSSVTLDYLLKKIKEGKPVVAINAAIPG---VFGL-KEFRKKY-PDQYVDVGIAEQESVAFASGIAANGARPVIFVN  351 (581)
T ss_pred             CcCHHHHHHHHHHHHhccCCCEEEEeCcccc---ccCc-HHHHHhc-cccccCCCchHHHHHHHHHHHHHCcCeEEEEee
Confidence            4589999999999999999999999999753   3455 8899999 999999999999999999999999999999776


Q ss_pred             cccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCcch-HHHHHHhcCCCcEEEeeCCHHHHHHHHHHh
Q 020510          116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSH-CYAAWYASVPGLKVLSPYSSEDARGLLKAA  194 (325)
Q Consensus       116 ~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tHs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a  194 (325)
                       +.|++||||||++++|+        +++||+++++++...++|+||++ .++++||++|||+|++|+|+.|++.+++++
T Consensus       352 -s~Fl~ra~dQi~~d~a~--------~~lpv~~~~~~~g~~~dG~TH~~~~Dia~lr~iPnl~V~~P~d~~e~~~~l~~a  422 (581)
T PRK12315        352 -STFLQRAYDQLSHDLAI--------NNNPAVMIVFGGSISGNDVTHLGIFDIPMISNIPNLVYLAPTTKEELIAMLEWA  422 (581)
T ss_pred             -HHHHHHHHHHHHHHHHh--------cCCCEEEEEECCcccCCCccccccHHHHHHhcCCCCEEEecCCHHHHHHHHHHH
Confidence             77889999999999997        58999999875333349999965 445999999999999999999999999999


Q ss_pred             HhC-CCcEEEEeCccccCcccCccccccCCCccccCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhc-CCcEEEEEe
Q 020510          195 IRD-PDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE-GISAEVINL  272 (325)
Q Consensus       195 ~~~-~~Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~-Gi~~~Vi~~  272 (325)
                      ++. ++|+|||++|..+..       .+..+..+..++++++++|+|++||++|++++.|++|++.|+++ ||+++|||+
T Consensus       423 ~~~~~gP~~ir~~r~~~~~-------~~~~~~~~~~~k~~v~~~g~dvtiia~G~~v~~Al~Aa~~L~~~~gi~~~Vid~  495 (581)
T PRK12315        423 LTQHEHPVAIRVPEHGVES-------GPTVDTDYSTLKYEVTKAGEKVAILALGDFYELGEKVAKKLKEELGIDATLINP  495 (581)
T ss_pred             HhCCCCcEEEEEcCCccCC-------CCCCccCcccceEEEEecCCCEEEEEEchHHHHHHHHHHHHhhhcCCCEEEEec
Confidence            986 699999998764321       11111234456899999999999999999999999999999999 999999999


Q ss_pred             eeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcCCC
Q 020510          273 RSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPA  317 (325)
Q Consensus       273 ~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~~~  317 (325)
                      +|+||||++.+.+++++++.|||+|||+..||+|++|++++.+++
T Consensus       496 ~~ikPlD~~~i~~~~~~~~~vvtvEe~~~~GG~gs~v~~~l~~~~  540 (581)
T PRK12315        496 KFITGLDEELLEKLKEDHELVVTLEDGILDGGFGEKIARYYGNSD  540 (581)
T ss_pred             CcCCCCCHHHHHHHHhhCCEEEEEcCCCcCCCHHHHHHHHHHcCC
Confidence            999999999998888778889999999999999999999998875

>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional

Probab=100.00  E-value=1.4e-53  Score=435.96  Aligned_cols=263  Identities=25%  Similarity=0.372  Sum_probs=232.1

Q ss_pred             cccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEecc
Q 020510           36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM  115 (325)
Q Consensus        36 ~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~  115 (325)
                      ..+++++|+++|.+++++|++|+++++|+..++   ++ .+|+++| |+||||+||+||+|+++|+|||+.|++||+++|
T Consensus       318 ~~~~~~~f~~~L~~la~~d~~iv~isadl~~~~---~~-~~f~~~~-p~R~id~GIaE~~mvg~AaGlA~~G~~P~v~~f  392 (641)
T PRK12571        318 APSYTSVFGEELTKEAAEDSDIVAITAAMPLGT---GL-DKLQKRF-PNRVFDVGIAEQHAVTFAAGLAAAGLKPFCAVY  392 (641)
T ss_pred             chhHHHHHHHHHHHHHhhCCCEEEEeCCccCCC---Ch-HHHHHhC-CCcccccCccHHHHHHHHHHHHHCCCEEEEEeh
Confidence            357999999999999999999999999986433   33 7899999 999999999999999999999999999999996


Q ss_pred             cccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeC-CCCCCCCCCCcchHH-HHHHhcCCCcEEEeeCCHHHHHHHHHH
Q 020510          116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAGVGAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKA  193 (325)
Q Consensus       116 ~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~~g~G~tHs~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~  193 (325)
                       +.|++||+|||++++|+        +++||+++.. .|..+++|+||++.. .++||+||||+|++|+|+.|++.++++
T Consensus       393 -~~Fl~ra~dQI~~~~a~--------~~lpv~~v~~~~G~~g~dG~THq~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~  463 (641)
T PRK12571        393 -STFLQRGYDQLLHDVAL--------QNLPVRFVLDRAGLVGADGATHAGAFDLAFLTNLPNMTVMAPRDEAELRHMLRT  463 (641)
T ss_pred             -HHHHHHHHHHHHHHHhh--------cCCCeEEEEECCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence             67889999999999997        5899999874 466667999996644 599999999999999999999999999


Q ss_pred             hHhC-CCcEEEEeCccccCcccCccccccCCCccccCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEe
Q 020510          194 AIRD-PDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINL  272 (325)
Q Consensus       194 a~~~-~~Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~  272 (325)
                      +++. ++|+|||++|..+..     ..++++++.+++||+.++++|+|++||++|++++.|++|++.|+++||+++|||+
T Consensus       464 a~~~~~~P~~ir~~r~~~~~-----~~~~~~~~~~~~gk~~vlr~G~ditIva~G~~v~~aleAa~~L~~~Gi~v~VId~  538 (641)
T PRK12571        464 AAAHDDGPIAVRFPRGEGVG-----VEIPAEGTILGIGKGRVPREGPDVAILSVGAHLHECLDAADLLEAEGISVTVADP  538 (641)
T ss_pred             HHhCCCCcEEEEEecCcCCc-----cccCCCCccccCceeEEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEc
Confidence            9995 799999988763211     1222334567899999999999999999999999999999999999999999999


Q ss_pred             eeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcCCCc
Q 020510          273 RSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPAW  318 (325)
Q Consensus       273 ~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~~~~  318 (325)
                      ++|+|||++.|.+++ ++++++|+|||...||+|++|++++.+++|
T Consensus       539 ~~lkPlD~~~i~sv~-k~~~vvvveE~~~~gG~g~~v~~~l~~~~~  583 (641)
T PRK12571        539 RFVKPLDEALTDLLV-RHHIVVIVEEQGAMGGFGAHVLHHLADTGL  583 (641)
T ss_pred             CcCCCcCHHHHHHHh-hhCCEEEEECCCCCCCHHHHHHHHHHhcCc
Confidence            999999999986655 555899999999999999999999998875

>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional

Probab=100.00  E-value=9.8e-53  Score=427.07  Aligned_cols=258  Identities=28%  Similarity=0.409  Sum_probs=230.5

Q ss_pred             ccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEeccc
Q 020510           37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMT  116 (325)
Q Consensus        37 ~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~~  116 (325)
                      .++|++|+++|.+++++|++++++++|+..++   ++ ..|+++| |+||||+||+||+|+++|+|||+.|++||+++| 
T Consensus       279 ~~~~~~~~~~L~~~~~~~~~vv~~~adl~~~~---~~-~~f~~~~-p~R~i~~GIaE~~mvg~A~GlA~~G~~p~~~~f-  352 (580)
T PRK05444        279 PSYTKVFGETLCELAEKDPKIVAITAAMPEGT---GL-VKFSKRF-PDRYFDVGIAEQHAVTFAAGLATEGLKPVVAIY-  352 (580)
T ss_pred             ccHHHHHHHHHHHHHhhCCCEEEEECCcCCCC---CH-HHHHHHh-hhhccCCChHHHHHHHHHHHHHHCCCeeEEEee-
Confidence            67999999999999999999999999985332   33 5699999 999999999999999999999999999999996 


Q ss_pred             ccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeC-CCCCCCCCCCcchHH-HHHHhcCCCcEEEeeCCHHHHHHHHHHh
Q 020510          117 FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAGVGAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAA  194 (325)
Q Consensus       117 ~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~~g~G~tHs~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a  194 (325)
                      +.|+.|++|||++++|+        +++||+++++ +|..+++|+||++.. .++||+|||++|++|+|+.|++.+++++
T Consensus       353 ~~F~~ra~dQi~~~~a~--------~~~pv~~v~~~~G~~g~dG~tH~~~edia~lr~iP~l~V~~Psd~~e~~~~l~~a  424 (580)
T PRK05444        353 STFLQRAYDQVIHDVAL--------QNLPVTFAIDRAGLVGADGPTHQGAFDLSYLRCIPNMVIMAPSDENELRQMLYTA  424 (580)
T ss_pred             HHHHHHHHHHHHHHhhh--------cCCCEEEEEeCCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHH
Confidence            66778999999999997        5899999986 466566899996644 5999999999999999999999999999


Q ss_pred             HhC-CCcEEEEeCccccCcccCccccccCCCccccCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEee
Q 020510          195 IRD-PDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLR  273 (325)
Q Consensus       195 ~~~-~~Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~  273 (325)
                      ++. ++|+|||++|..+..     .. .++.+.+++|+++++++|+|++||++|++++.|++|++.|+    +++|||++
T Consensus       425 ~~~~~~P~~ir~~r~~~~~-----~~-~~~~~~~~~Gk~~vl~~G~dvtIia~G~~v~~al~Aa~~L~----~~~VId~~  494 (580)
T PRK05444        425 LAYDDGPIAIRYPRGNGVG-----VE-LPELEPLPIGKGEVLREGEDVAILAFGTMLAEALKAAERLA----SATVVDAR  494 (580)
T ss_pred             HhCCCCcEEEEecCCCCCC-----CC-CCCcccccCCceEEEEcCCCEEEEEccHHHHHHHHHHHHhC----CCEEEEeC
Confidence            976 799999998864321     01 12246688999999999999999999999999999999996    89999999


Q ss_pred             eccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcCCCc
Q 020510          274 SIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPAW  318 (325)
Q Consensus       274 ~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~~~~  318 (325)
                      |++|||++.|.+++++++++||+|||+..||+|++|++++.++++
T Consensus       495 ~i~p~D~~~i~~~~~~~~~vv~vEe~~~~gG~g~~va~~l~~~~~  539 (580)
T PRK05444        495 FVKPLDEELLLELAAKHDLVVTVEEGAIMGGFGSAVLEFLADHGL  539 (580)
T ss_pred             cCCccCHHHHHHHHhcCCeEEEEECCCCCCCHHHHHHHHHHhhcC
Confidence            999999999999999999999999999999999999999998875

>KOG0525 consensus Branched chain alpha-keto acid dehydrogenase E1, beta subunit [Energy production and conversion]

Probab=100.00  E-value=7.4e-53  Score=370.33  Aligned_cols=282  Identities=35%  Similarity=0.642  Sum_probs=268.6

Q ss_pred             ccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEec
Q 020510           35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF  114 (325)
Q Consensus        35 ~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~  114 (325)
                      ++|..-.++..+|.-.+++||+-++.++|++ .+|+|.++.+|+++||.+|+||++.+||+++|+.+|+|..|.+.+.++
T Consensus        39 ~~mnl~qsvn~al~ial~tdp~a~vfgedv~-fggvfrct~gl~~kfgk~rvfntplceqgivgfgig~aa~g~~aiaei  117 (362)
T KOG0525|consen   39 KKMNLYQSVNQALHIALETDPRAVVFGEDVA-FGGVFRCTTGLAEKFGKDRVFNTPLCEQGIVGFGIGLAAMGATAIAEI  117 (362)
T ss_pred             ccchHHHHHHHHHHHHhhcCCceEEeccccc-cceEEEeecchHHHhCccccccCchhhcccceechhhhhcccceEEEE
Confidence            7888999999999999999999999999997 899999999999999999999999999999999999999999999999


Q ss_pred             ccccHHHHHHHHHHHHHhhccccCCCCccC-CEEEEeCCCCCCCCCCCcchHHHHHHhcCCCcEEEeeCCHHHHHHHHHH
Q 020510          115 MTFNFSMQAIDHIINSAAKSNYMSSGQISV-PIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKA  193 (325)
Q Consensus       115 ~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~-pvv~~~~~G~~~g~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~  193 (325)
                      ++++++..|||||.|.+++.+|++|.+.|+ .++++.++|..+..+..|||+.|++|.+.||++|+.|..|.|++.+|..
T Consensus       118 qfadyifpafdqivneaakfryrsgnqfncg~ltir~p~gavghg~~yhsqspeaff~h~pgikvviprsp~qakgllls  197 (362)
T KOG0525|consen  118 QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRAPWGAVGHGALYHSQSPEAFFCHVPGIKVVIPRSPRQAKGLLLS  197 (362)
T ss_pred             eeccccchhHHHHHHHHHhheeccCCccccCceEEeccccccccccccccCCchhheecCCCceEEecCCcchhhceeee
Confidence            999999999999999999999999999999 5999999888777788999999999999999999999999999999999


Q ss_pred             hHhCCCcEEEEeCccccCcccCccccccCCCccccCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhc-CCcEEEEEe
Q 020510          194 AIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE-GISAEVINL  272 (325)
Q Consensus       194 a~~~~~Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~-Gi~~~Vi~~  272 (325)
                      ++++++|+++.+++.+|+...   .++|.++|.++++.++++|+|+|+++++||..++.++|++-.-+|+ |++++|||+
T Consensus       198 cirdpnp~iffepk~lyr~a~---edvp~~dy~iplsqaevireg~ditlv~wgtqvh~i~e~a~l~~ek~giscevidl  274 (362)
T KOG0525|consen  198 CIRDPNPCIFFEPKILYRQAV---EDVPEGDYMIPLSQAEVIREGSDITLVAWGTQVHVIMEQACLAKEKLGISCEVIDL  274 (362)
T ss_pred             eccCCCceEEechHHHHHHhh---hhCCCCCccccccHHHHhhcCCceEEEEcchhhHHHHHHHHhhHHhcCCceEEEee
Confidence            999999999999999997642   5678899999999999999999999999999999999998876655 999999999


Q ss_pred             eeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcCCCccc
Q 020510          273 RSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPAWLI  320 (325)
Q Consensus       273 ~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~~~~~~  320 (325)
                      .+|-|||.+.+.++++|++++++-.|..++||||++|++.++|++|+.
T Consensus       275 kti~pwd~d~v~~sv~ktgrllisheapvtggfgaeiastv~ercfl~  322 (362)
T KOG0525|consen  275 KTIIPWDKDTVEESVQKTGRLLISHEAPVTGGFGAEIASTVQERCFLN  322 (362)
T ss_pred             ecccCccHHHHHHHHHhhceEEEeccCCccCcchHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999874

>TIGR00232 tktlase_bact transketolase, bacterial and yeast

Probab=100.00  E-value=3.2e-46  Score=382.72  Aligned_cols=256  Identities=19%  Similarity=0.234  Sum_probs=212.8

Q ss_pred             ccCcccccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCcccc-chhHHHHhCCCceeechhhHHHHHHHHHHHhc-c
Q 020510           29 NYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKI-SKGLLEKYGPERVLDTPITEAGFTGIGVGAAY-Y  106 (325)
Q Consensus        29 ~~~~~~~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~-~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~-~  106 (325)
                      .|..+++++++|++|+++|.++++++++++++++|++.++.+... ...|+++| |+||||+||+||+|+++|+|||+ .
T Consensus       341 ~~~~~~~~~atR~~~g~~L~~la~~~p~iv~lsaDl~~s~~~~~~~~~~f~~~~-p~rfi~~GIaEq~mv~~AaGlA~~g  419 (653)
T TIGR00232       341 EFKAKLQALATRKYSQNVLNAIANVLPELLGGSADLAPSNLTKWKGSGDLHENP-LGNYIHYGVREFAMGAIMNGIALHG  419 (653)
T ss_pred             hhhccCcchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCcccccccchhhcC-CCCeEeecccHHHHHHHHHHHHHcC
Confidence            343344788999999999999999999999999999765543100 01278899 99999999999999999999999 6


Q ss_pred             CCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeC-CCCC-CCCCCCcchHH--HHHHhcCCCcEEEeeC
Q 020510          107 GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAA-AGVGAQHSHCY--AAWYASVPGLKVLSPY  182 (325)
Q Consensus       107 G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~-~g~G~tHs~~~--~a~~~~iP~~~V~~P~  182 (325)
                      |++||++||+ .|++|+++|||+. |+        +++||++++. +|.+ +.+|+|| |.+  .++||++|||+|+.|+
T Consensus       420 G~~p~~~tf~-~F~~r~~~~ir~~-a~--------~~lpV~~v~th~g~~~G~dG~TH-q~iedia~lr~iPn~~v~~Pa  488 (653)
T TIGR00232       420 GFKPYGGTFL-MFVDYARPAIRLA-AL--------MKLPVIYVYTHDSIGVGEDGPTH-QPIEQLASLRAIPNLSVWRPC  488 (653)
T ss_pred             CCeEEEEEhH-HHHHHHHHHHHHH-Hh--------cCCCEEEEEeCCccCCCCCCccc-CCHHHHHHHhcCCCCEEEeeC
Confidence            8999999984 5678999999987 86        5789999885 3655 4589999 655  4899999999999999


Q ss_pred             CHHHHHHHHHHhH-hCCCcEEEEeCccccCcccCccccccCCC-ccccCCceEEe--eeCCcEEEEEechhHHHHHHHHH
Q 020510          183 SSEDARGLLKAAI-RDPDPVVFLENELLYGESFPVSAEVLDSS-FCLPIGKAKIE--REGKDVTITAFSKIVGLSLKAAE  258 (325)
Q Consensus       183 d~~e~~~~l~~a~-~~~~Pv~ir~~~~l~~~~~p~~~~~~~~~-~~~~~gk~~vl--~~G~dv~Iia~G~~~~~a~~Aa~  258 (325)
                      |+.|++.++++++ +.++|+|||.+|..    .|   .+++.+ ..+..|+ +++  ++|.|++||++|+++++|++|++
T Consensus       489 D~~E~~~~~~~a~~~~~gP~~irl~r~~----~~---~~~~~~~~~~~~G~-~vl~~~~g~dv~iia~G~~v~~al~Aa~  560 (653)
T TIGR00232       489 DGNETAAAWKYALESQDGPTALILSRQN----LP---QLEESSLEKVLKGG-YVLKDSKGPDIILIATGSEVSLAVEAAK  560 (653)
T ss_pred             CHHHHHHHHHHHHhcCCCcEEEEEcCCc----cC---CCCcccccccCCCc-EEEEecCCCCEEEEEeChHHHHHHHHHH
Confidence            9999999999999 56799999988762    22   122222 3456675 666  67899999999999999999999


Q ss_pred             HHHhcCCcEEEEEeeeccCCCHHH---HHHHHhCCCeEEEEecCCCCCCH
Q 020510          259 ILAKEGISAEVINLRSIRPLDRST---INASVRKTNRLVTVEEGFPQHGV  305 (325)
Q Consensus       259 ~L~~~Gi~~~Vi~~~~l~P~d~~~---l~~~~~~~~~vvvvEe~~~~GGl  305 (325)
                      .|+++||+++|||++|++|||.+.   +.++++++..+||+|||+. +|+
T Consensus       561 ~L~~~Gi~~~VI~~~~ikpld~~~~~~~~~~~~~~~~vvtvEe~~~-~g~  609 (653)
T TIGR00232       561 KLAAENIKVRVVSMPSFDLFDKQDEEYRESVLPANVTRLAVEAGAA-DEW  609 (653)
T ss_pred             HHHhcCCcEEEEecccCcccccCCHHHHHHHhcccCceEEEecccH-hHH
Confidence            999999999999999999997755   8877877888999999987 444

This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.

>PRK05899 transketolase; Reviewed

Probab=100.00  E-value=1.1e-45  Score=378.57  Aligned_cols=246  Identities=22%  Similarity=0.294  Sum_probs=204.3

Q ss_pred             ccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHH------HHhCCCceeechhhHHHHHHHHHHHhccC-
Q 020510           35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLL------EKYGPERVLDTPITEAGFTGIGVGAAYYG-  107 (325)
Q Consensus        35 ~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~------~~~gp~R~i~~GIaE~~~vg~A~GlA~~G-  107 (325)
                      +++++|++|+++|.+++++|++++++++|++.+++.    ..+.      ++| |+||||+||+||+|+++|+|||+.| 
T Consensus       317 ~~~~~~~a~~~~l~~l~~~~~~v~vl~~D~~~~~~~----~~~~~~~f~~~~~-p~R~~d~GIaE~~~vg~A~GlA~~G~  391 (624)
T PRK05899        317 EKVATRKASGKALNALAKALPELVGGSADLAGSNNT----KIKGSKDFAPEDY-SGRYIHYGVREFAMAAIANGLALHGG  391 (624)
T ss_pred             cchHHHHHHHHHHHHHHhhCCCEEEEeCCCccccCc----ccccccccCccCC-CCCeeeeChhHHHHHHHHHHHHHcCC
Confidence            566789999999999999999999999999754332    2233      467 8999999999999999999999999 


Q ss_pred             CeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC-CCC-CCCCCCcchHHH--HHHhcCCCcEEEeeCC
Q 020510          108 LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAA-AGVGAQHSHCYA--AWYASVPGLKVLSPYS  183 (325)
Q Consensus       108 ~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~-~g~G~tHs~~~~--a~~~~iP~~~V~~P~d  183 (325)
                      ++||+++|.+ |+.|++||||+. ++        +++|+++++.. |.. +++|+|| |+++  ++||++|||+|++|+|
T Consensus       392 ~~pv~~t~~~-F~~r~~~qir~~-~~--------~~~pv~~v~~~~G~~~g~~G~tH-q~~edia~~r~iP~~~V~~P~d  460 (624)
T PRK05899        392 FIPFGGTFLV-FSDYARNAIRLA-AL--------MKLPVIYVFTHDSIGVGEDGPTH-QPVEQLASLRAIPNLTVIRPAD  460 (624)
T ss_pred             CeEEEEEcHH-HHHHHHHHHHHH-Hh--------cCCCEEEEEECCCcCcCCCCCCc-ccHHHHHHHHhCCCcEEEeCCC
Confidence            9999999855 579999999985 75        57899998654 664 4599999 7664  8999999999999999


Q ss_pred             HHHHHHHHHHhHhC-CCcEEEEeCccccCcccCccccccC--CCccccCCceEEeeeCCcEEEEEechhHHHHHHHHHHH
Q 020510          184 SEDARGLLKAAIRD-PDPVVFLENELLYGESFPVSAEVLD--SSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEIL  260 (325)
Q Consensus       184 ~~e~~~~l~~a~~~-~~Pv~ir~~~~l~~~~~p~~~~~~~--~~~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L  260 (325)
                      ++|++.+++++++. ++|+|||++|.    ..|   .+++  ..+.++.|+ +++++|.|++||++|+++++|++|++.|
T Consensus       461 ~~e~~~~l~~a~~~~~~P~~ir~~r~----~~~---~~~~~~~~~~~~~G~-~~l~~G~dvtiia~G~~v~~al~Aa~~L  532 (624)
T PRK05899        461 ANETAAAWKYALERKDGPSALVLTRQ----NLP---VLERTAQEEGVAKGG-YVLRDDPDVILIATGSEVHLALEAADEL  532 (624)
T ss_pred             HHHHHHHHHHHHHcCCCCEEEEEeCC----CCC---CcCCccccccccCCc-EEEecCCCEEEEEeCHHHHHHHHHHHHH
Confidence            99999999999998 89999998764    222   1222  224577786 8889999999999999999999999999


Q ss_pred             HhcCCcEEEEEeeeccCCCHHH---HHHHH-hCCCeEEEEecCCCCCCH
Q 020510          261 AKEGISAEVINLRSIRPLDRST---INASV-RKTNRLVTVEEGFPQHGV  305 (325)
Q Consensus       261 ~~~Gi~~~Vi~~~~l~P~d~~~---l~~~~-~~~~~vvvvEe~~~~GGl  305 (325)
                      +++||+++|||++||+|||++.   +...+ .....++++|++.. +|+
T Consensus       533 ~~~gi~~~VId~~sikPlD~~e~h~~~~~lg~~~~~~v~~e~~~~-~g~  580 (624)
T PRK05899        533 EAEGIKVRVVSMPSTELFDEQDAAYKESVLPAAVTARVAVEAGVA-DGW  580 (624)
T ss_pred             HhcCCcEEEEECCCcchhccCcHHHHhccccccccceEEEccCCc-cch
Confidence            9999999999999999999983   44444 33446788887765 555

>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.7e-45  Score=358.57  Aligned_cols=265  Identities=23%  Similarity=0.352  Sum_probs=223.6

Q ss_pred             cccccCcccccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhc
Q 020510           26 NLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAY  105 (325)
Q Consensus        26 ~~~~~~~~~~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~  105 (325)
                      -+++|..+++.+++|++|.++|..+.+.+|++|.+.+|+..++.+    +-|.++| |+|||++||+||||+++|.|+|.
T Consensus       309 ~~p~yk~~Dk~~Atrk~~~~aL~~l~~~~~~vI~~~ad~~~st~t----d~~~~~~-p~R~i~~giaEq~mv~ia~G~a~  383 (632)
T KOG0523|consen  309 SLPTYKVGDKAVATRKAFGEALAALAEADPRVIGGSADLKNSTLT----DFFPKRF-PERFIECGIAEQNMVGIANGIAC  383 (632)
T ss_pred             cCCccccCChhhhHHHHHHHHHHHHhhcCcCeEEEecccCCCchh----hhccccC-ccceEEEeeehhhhHHhhhchhc
Confidence            355899887779999999999999999999999999999876533    6677889 99999999999999999999999


Q ss_pred             cCC-eeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeC-CCCC-CCCCCCcchHH--HHHHhcCCCcEEEe
Q 020510          106 YGL-KPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAA-AGVGAQHSHCY--AAWYASVPGLKVLS  180 (325)
Q Consensus       106 ~G~-~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~-~g~G~tHs~~~--~a~~~~iP~~~V~~  180 (325)
                      .|. +||+.|| +.|++||+||+|+++-         .+.++++++. ++.+ +.+|+|| |..  .++||++|||.|+.
T Consensus       384 ~g~~~Pf~~tf-~~F~trA~dqvr~~a~---------s~~~v~~v~th~~i~~GeDGPth-~~iedlA~frsiPn~~v~~  452 (632)
T KOG0523|consen  384 RGRTIPFCGTF-AAFFTRAFDQVRMGAL---------SQANVIYVATHDSIGLGEDGPTH-QPIEDLAMFRSIPNMIVFR  452 (632)
T ss_pred             CCCccchhHHH-HHHHHHhhhheeehhh---------ccCCcEEEEEeccccccCCCccc-ccHHHHHHHHhCCCceEEe
Confidence            998 9999998 5689999999999753         3445555543 4555 5599999 644  49999999999999


Q ss_pred             eCCHHHHHHHHHHhHhCCC-cEEEEeCccccCcccCccccccCCCccccCCceE-EeeeCC-cEEEEEechhHHHHHHHH
Q 020510          181 PYSSEDARGLLKAAIRDPD-PVVFLENELLYGESFPVSAEVLDSSFCLPIGKAK-IEREGK-DVTITAFSKIVGLSLKAA  257 (325)
Q Consensus       181 P~d~~e~~~~l~~a~~~~~-Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~~gk~~-vl~~G~-dv~Iia~G~~~~~a~~Aa  257 (325)
                      |+|..|+..+++.|++.++ |++++.+|.    +.|   .+ +....++.|+++ +++++. ||+||++|++++++++||
T Consensus       453 PaD~~et~~av~~Aa~~~~~p~i~~~~r~----~~~---~~-~~~~~~~igkg~~vl~~~~~dV~LiG~Gs~v~~cl~AA  524 (632)
T KOG0523|consen  453 PADGNETENAVATAANTKGTPSIRTLSRQ----NLP---IY-NNTEIEEIGKGKYVLQEVEPDVILIGTGSEVQECLEAA  524 (632)
T ss_pred             cCchHHHHHHHHHHHhcCCCeeEEEecCc----ccc---cc-CCCchhhhccccEEEecCCCCEEEEeccHHHHHHHHHH
Confidence            9999999999999999766 888876543    222   22 233346788877 777876 999999999999999999


Q ss_pred             HHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCC-eEEEEecCCCCCCHHHHHHHHHc
Q 020510          258 EILAKEGISAEVINLRSIRPLDRSTINASVRKTN-RLVTVEEGFPQHGVGAEIWCAFF  314 (325)
Q Consensus       258 ~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~-~vvvvEe~~~~GGlg~~v~~~l~  314 (325)
                      +.|+++||+++|+|++++||||..+|+++.+.++ ++.|+|||+..||++.++.....
T Consensus       525 ~~L~~~gi~vrVvd~~~~kplD~~li~~~~q~~e~ri~v~ed~~~~gsi~~~~~a~~g  582 (632)
T KOG0523|consen  525 ELLSEDGIKVRVVDPFTWKPLDVALIRSLAQSHEYRISVLEDHVPAGSIEVAVTAAWG  582 (632)
T ss_pred             HHHHhcCceEEEecccceeecchHHhhhhhcccceeEEEccCCCCCcchhheeeehhc
Confidence            9999999999999999999999999998887764 79999999988888887765543

>PTZ00089 transketolase; Provisional

Probab=100.00  E-value=4e-45  Score=375.11  Aligned_cols=256  Identities=18%  Similarity=0.217  Sum_probs=209.9

Q ss_pred             cccCcccccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCcc-ccchhHHHHhCC-CceeechhhHHHHHHHHHHHhc
Q 020510           28 RNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY-KISKGLLEKYGP-ERVLDTPITEAGFTGIGVGAAY  105 (325)
Q Consensus        28 ~~~~~~~~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~-~~~~~~~~~~gp-~R~i~~GIaE~~~vg~A~GlA~  105 (325)
                      ..|..+++++++|++|+++|.++.+.+++++.+++|+..++.+. .-...|+++| | +||||+||+||+|+++|+|||+
T Consensus       346 ~~~~~~~~~~a~R~~~g~~L~~la~~~~~~~~~saDl~~s~~~~~~~~~~f~~~~-P~~rfi~~GIaEq~mv~~AaGlA~  424 (661)
T PTZ00089        346 PKYTTNDKAIATRKASENVLNPLFQILPELIGGSADLTPSNLTRPKEANDFTKAS-PEGRYIRFGVREHAMCAIMNGIAA  424 (661)
T ss_pred             hhhcccCcchHHHHHHHHHHHHHHhhCCCeEEEECCCCcccCcCCcccccccccC-CCCCeeeeeecHHHHHHHHHHHHH
Confidence            33444456789999999999999999999999999997654320 0013688889 8 8999999999999999999999


Q ss_pred             -cCCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeC-CCCC-CCCCCCcchHH--HHHHhcCCCcEEEe
Q 020510          106 -YGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAA-AGVGAQHSHCY--AAWYASVPGLKVLS  180 (325)
Q Consensus       106 -~G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~-~g~G~tHs~~~--~a~~~~iP~~~V~~  180 (325)
                       .|++||+++| +.|++|++||||+. |+        +++||++++. +|.+ +.+|+|| |.+  .++||+||||+|+.
T Consensus       425 ~~G~~P~~~tf-~~Fl~Ra~dqir~~-al--------~~lpV~~v~thdg~~~g~DG~TH-q~iedia~lR~iPn~~V~~  493 (661)
T PTZ00089        425 HGGFIPFGATF-LNFYGYALGAVRLA-AL--------SHHPVIYVATHDSIGLGEDGPTH-QPVETLALLRATPNLLVIR  493 (661)
T ss_pred             cCCCeEEEEeh-HHHHHHHHHHHHHH-Hh--------cCCCeEEEEeCCceecCCCCCCc-ccHHHHHHHhcCCCcEEEe
Confidence             7999999998 56788999999876 87        5899999874 4554 4599999 644  49999999999999


Q ss_pred             eCCHHHHHHHHHHhHh-CCCcEEEEeCccccCcccCccccccCCCccccCCceEEeeeC---CcEEEEEechhHHHHHHH
Q 020510          181 PYSSEDARGLLKAAIR-DPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREG---KDVTITAFSKIVGLSLKA  256 (325)
Q Consensus       181 P~d~~e~~~~l~~a~~-~~~Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~~gk~~vl~~G---~dv~Iia~G~~~~~a~~A  256 (325)
                      |+|++|+..+++++++ .++|+|||.+|.    ..|   .++..+..+..+++++++++   .|++||++|+++.+|++|
T Consensus       494 PaD~~E~~~~l~~al~~~~gP~~irl~R~----~~~---~~~~~~~~~~~~g~~vl~~~~~~~dv~iia~G~~v~~Al~A  566 (661)
T PTZ00089        494 PADGTETSGAYALALANAKTPTILCLSRQ----NTP---PLPGSSIEGVLKGAYIVVDFTNSPQLILVASGSEVSLCVEA  566 (661)
T ss_pred             cCCHHHHHHHHHHHHHcCCCCEEEEecCC----CCC---CcCCCccccccCceEEEeccCCCCCEEEEeeCHHHHHHHHH
Confidence            9999999999999995 579999998765    222   22223334445667888875   799999999999999999


Q ss_pred             HHHHHhcCCcEEEEEeeeccCCCHHHHHHH---Hh-CCCeEEEEecCCCCC
Q 020510          257 AEILAKEGISAEVINLRSIRPLDRSTINAS---VR-KTNRLVTVEEGFPQH  303 (325)
Q Consensus       257 a~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~---~~-~~~~vvvvEe~~~~G  303 (325)
                      ++.|++ ||+++|||++|++|||.+.+...   +. +...++++|+|...|
T Consensus       567 a~~L~~-Gi~~~Vv~~~~ikp~d~~~~~~~~~v~~e~~~~~vtiE~~~~~g  616 (661)
T PTZ00089        567 AKALSK-ELNVRVVSMPCWELFDQQSEEYQQSVLPSGGVPVLSVEAYVSFG  616 (661)
T ss_pred             HHHHhc-CCCeEEEeCCCccHHHHHHHHHHHHhcCCCCCceEeHHhhHHHH
Confidence            999999 99999999999999999976533   33 344689999998754

>PRK12753 transketolase; Reviewed

Probab=100.00  E-value=1.6e-44  Score=370.17  Aligned_cols=246  Identities=20%  Similarity=0.212  Sum_probs=203.6

Q ss_pred             ccccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCc-cccchhHHHHhCCCceeechhhHHHHHHHHHHHhc-cCCee
Q 020510           33 AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGA-YKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAY-YGLKP  110 (325)
Q Consensus        33 ~~~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~-~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~-~G~~p  110 (325)
                      +++++++|++++++|.++++++|+++++++|++.++.+ +.-...|+++| |+||||+||+||+|+++|+|||+ .|++|
T Consensus       351 ~~~~~a~r~~~g~~L~~l~~~~p~lv~~sADl~~S~~~~~~~~~~f~~~~-p~r~i~~GIaEq~mv~~aaGlA~~~G~~P  429 (663)
T PRK12753        351 NPAKIATRKASQNTLEAYGPLLPELLGGSADLAPSNLTIWSGSKSLKEDP-AGNYIHYGVREFGMTAIANGIAHHGGFVP  429 (663)
T ss_pred             cccccHHHHHHHHHHHHHHhhCCCeEEEccccccccCcccccccchhhcC-CCCEEEeeecHHHHHHHHHHHHHhCCCeE
Confidence            45688999999999999999999999999999866533 11125688899 99999999999999999999999 78999


Q ss_pred             EEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeC-CCCC-CCCCCCcchHH--HHHHhcCCCcEEEeeCCHHH
Q 020510          111 VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAA-AGVGAQHSHCY--AAWYASVPGLKVLSPYSSED  186 (325)
Q Consensus       111 ~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~-~g~G~tHs~~~--~a~~~~iP~~~V~~P~d~~e  186 (325)
                      |++||+ .|++|++||||+. |+        +++||++++. +|.+ +.+|+|| |.+  .++||.||||+|+.|+|..|
T Consensus       430 ~~~tf~-~F~~r~~~qir~~-a~--------~~l~V~~v~thdg~~~G~DG~TH-q~iedla~lR~iPn~~v~~PaD~~E  498 (663)
T PRK12753        430 YTATFL-MFVEYARNAARMA-AL--------MKARQIMVYTHDSIGLGEDGPTH-QPVEQLASLRLTPNFSTWRPCDQVE  498 (663)
T ss_pred             EEEehH-HHHHHHHHHHHHH-Hh--------cCCCeEEEEeCCCcccCCCCccc-ccHHHHHHHhcCCCCEEEccCCHHH
Confidence            999995 5678999999985 87        5799999865 4665 4599999 644  49999999999999999999


Q ss_pred             HHHHHHHhHh-CCCcEEEEeCccccCcccCccccccCC---CccccCCceEEeeeCC---cEEEEEechhHHHHHHHHHH
Q 020510          187 ARGLLKAAIR-DPDPVVFLENELLYGESFPVSAEVLDS---SFCLPIGKAKIEREGK---DVTITAFSKIVGLSLKAAEI  259 (325)
Q Consensus       187 ~~~~l~~a~~-~~~Pv~ir~~~~l~~~~~p~~~~~~~~---~~~~~~gk~~vl~~G~---dv~Iia~G~~~~~a~~Aa~~  259 (325)
                      +..+++++++ .++|+|||.+|.    ..|   .++..   ...+..|+ +++++|.   |++||++|+++++|++|++.
T Consensus       499 ~~~~~~~al~~~~gP~~irl~R~----~~~---~~~~~~~~~~~~~~G~-~vl~~~~~~~dv~iia~Gs~v~~al~Aa~~  570 (663)
T PRK12753        499 AAVAWKLAIERHNGPTALILSRQ----NLA---QQERTPEQVKNIARGG-YILKDSGGKPDLILIATGSEVEITLQAAEK  570 (663)
T ss_pred             HHHHHHHHHhcCCCCEEEEecCC----CCC---CCCCcccchhhccCCc-EEEeccCCCCCEEEEEeCHHHHHHHHHHHH
Confidence            9999999998 589999998765    222   12222   12355565 7888864   99999999999999999999


Q ss_pred             HHhcCCcEEEEEeeeccCCCHHHH--HHH-Hh--CCCeEEEEecC
Q 020510          260 LAKEGISAEVINLRSIRPLDRSTI--NAS-VR--KTNRLVTVEEG  299 (325)
Q Consensus       260 L~~~Gi~~~Vi~~~~l~P~d~~~l--~~~-~~--~~~~vvvvEe~  299 (325)
                      |+++||+++|||++|++|||.+.+  ++. +.  .++ .|++|+|
T Consensus       571 L~~~gi~~~Vv~~~~~kp~d~~~~~y~~~vl~~~~~~-~vtvE~~  614 (663)
T PRK12753        571 LTAEGRNVRVVSMPSTDIFDAQDEAYRESVLPSNVTA-RVAVEAG  614 (663)
T ss_pred             HHhcCCCcEEEECCcCCccchhHHHHHHhhcccccce-EEEEccC
Confidence            999999999999999999999976  221 11  233 4999998

>PLN02790 transketolase

Probab=100.00  E-value=2.8e-44  Score=368.48  Aligned_cols=259  Identities=17%  Similarity=0.199  Sum_probs=214.0

Q ss_pred             cccCcccccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCcc-ccchhHHHH-hCCCceeechhhHHHHHHHHHHHhc
Q 020510           28 RNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY-KISKGLLEK-YGPERVLDTPITEAGFTGIGVGAAY  105 (325)
Q Consensus        28 ~~~~~~~~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~-~~~~~~~~~-~gp~R~i~~GIaE~~~vg~A~GlA~  105 (325)
                      .+|..+.+++++|++|++.|.++.+.+++++++++|+..++.++ .-+..|+++ | |+||||+||+||+|+++|+|||+
T Consensus       335 ~~~~~~~~~~a~R~~~~~~l~~i~~~~p~iv~gsaDl~~s~~t~~~~~~~f~~~~~-p~Rfi~~GIaEq~mv~~AaGlA~  413 (654)
T PLN02790        335 PTFTPEDPADATRNLSQKCLNALAKVLPGLIGGSADLASSNMTLLKDFGDFQKDTP-EERNVRFGVREHGMGAICNGIAL  413 (654)
T ss_pred             hhhcccCcchHHHHHHHHHHHHHHhhCCCeEEEECCCCcccccccccchhhhhcCC-CCCeEEeeechHHHHHHHHHHHh
Confidence            34443446789999999999999999999999999998665432 112678888 6 89999999999999999999999


Q ss_pred             c--CCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC-CCC-CCCCCCcchHH--HHHHhcCCCcEEE
Q 020510          106 Y--GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAA-AGVGAQHSHCY--AAWYASVPGLKVL  179 (325)
Q Consensus       106 ~--G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~-~g~G~tHs~~~--~a~~~~iP~~~V~  179 (325)
                      .  |++||++||.. |+.|+++|||+. |+        +++||++++.+ |.+ +.+|+|| |.+  .++||+||||+|+
T Consensus       414 ~G~G~~P~~~tf~~-F~~~~~~~ir~~-al--------~~lpV~~v~thdg~~~G~DG~TH-q~iedla~lR~iPnl~V~  482 (654)
T PLN02790        414 HSSGLIPYCATFFV-FTDYMRAAMRLS-AL--------SEAGVIYVMTHDSIGLGEDGPTH-QPIEHLASLRAMPNILML  482 (654)
T ss_pred             cCCCcEEEEEecHH-HHHHHHHHHHHH-Hh--------cCCCeEEEEECCceeecCCCCCc-ccHHHHHHhcCCCCcEEE
Confidence            5  69999999955 567999999886 87        58999998753 554 4599999 644  4999999999999


Q ss_pred             eeCCHHHHHHHHHHhHh-CCCcEEEEeCccccCcccCccccccCC-CccccCCceEEeeeC-----CcEEEEEechhHHH
Q 020510          180 SPYSSEDARGLLKAAIR-DPDPVVFLENELLYGESFPVSAEVLDS-SFCLPIGKAKIEREG-----KDVTITAFSKIVGL  252 (325)
Q Consensus       180 ~P~d~~e~~~~l~~a~~-~~~Pv~ir~~~~l~~~~~p~~~~~~~~-~~~~~~gk~~vl~~G-----~dv~Iia~G~~~~~  252 (325)
                      .|+|++|+..+++++++ .++|+|||.+|.    ..|   .++.+ ...++.|+ ++++++     .|++||++|+++++
T Consensus       483 ~PaD~~E~~~~l~~al~~~~gP~~irl~R~----~~~---~~~~~~~~~~~~G~-~vl~~~~~~~~~dv~iia~G~~v~~  554 (654)
T PLN02790        483 RPADGNETAGAYKVAVTNRKRPTVLALSRQ----KVP---NLPGTSIEGVEKGG-YVISDNSSGNKPDLILIGTGSELEI  554 (654)
T ss_pred             eCCCHHHHHHHHHHHHHcCCCCEEEEecCC----CCC---CCCCCcccccccCc-EEEEeCCCCCCCCEEEEEcCHHHHH
Confidence            99999999999999997 579999998875    222   12221 24467786 666764     79999999999999


Q ss_pred             HHHHHHHHHhcCCcEEEEEeeeccCCCHHHHH---HHH-hCCCeEEEEecCCCCCCHHH
Q 020510          253 SLKAAEILAKEGISAEVINLRSIRPLDRSTIN---ASV-RKTNRLVTVEEGFPQHGVGA  307 (325)
Q Consensus       253 a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~---~~~-~~~~~vvvvEe~~~~GGlg~  307 (325)
                      |++|++.|+++||+++|||++|++|||.+.+.   +.+ ++++.+|++|||.. +|+++
T Consensus       555 Al~Aa~~L~~~gi~~~VV~~~~ikpld~~~~~y~~~~~~~~~~~vvtiE~~~~-~G~~~  612 (654)
T PLN02790        555 AAKAAKELRKEGKKVRVVSMVCWELFEEQSDEYKESVLPSSVTARVSVEAGST-FGWEK  612 (654)
T ss_pred             HHHHHHHHHhcCCceEEEecCccchhhhhHHHHHHhhhccccceEEEecCccc-hhHHH
Confidence            99999999999999999999999999998744   566 56678999999986 77765

>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase

Probab=100.00  E-value=7.8e-44  Score=367.92  Aligned_cols=265  Identities=18%  Similarity=0.198  Sum_probs=219.1

Q ss_pred             cccccHHHHHHHHHHHHHhc---CCcEEEEecCCCCccCcccc---------------------chhHHHHhCCCceeec
Q 020510           34 VKQMMVREALNSALDEEMSA---DPKVFLMGEEVGEYQGAYKI---------------------SKGLLEKYGPERVLDT   89 (325)
Q Consensus        34 ~~~~s~~~a~~~~L~~l~~~---d~~iv~l~~D~~~~~g~~~~---------------------~~~~~~~~gp~R~i~~   89 (325)
                      ++++|++.||++.|..|++.   .++||.+.+|+++++|.-++                     ...+++.+ |+||||+
T Consensus       487 ~~~~sT~~Af~r~l~~L~~~~~~~~riV~i~pD~a~t~gm~~~f~~~gi~~~~gq~y~~~d~~~~~~y~e~~-p~R~ie~  565 (889)
T TIGR03186       487 GKEMSTTMAIVRMLGALLKDAELGPRIVPIVADEARTFGMANLFRQVGIYSPLGQRYEPEDLGSMLYYREDT-DGQILEE  565 (889)
T ss_pred             CCcccHHHHHHHHHHHHHhCccccCCEEEeCCcccccCCchhhhccccccCcccccCCccchHHHHHHhhcC-CCcEEEe
Confidence            48899999999998877765   68899999999876522111                     13466778 9999999


Q ss_pred             hhhHHHHHH--HHHHHhcc----CCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC-CC-C-CCCCC
Q 020510           90 PITEAGFTG--IGVGAAYY----GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GA-A-AGVGA  160 (325)
Q Consensus        90 GIaE~~~vg--~A~GlA~~----G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~-~-~g~G~  160 (325)
                      ||+||||++  +|+|+|++    |++||+.+|+.|.++|++|||+++ |+        ++.++++++.. |. + +++|.
T Consensus       566 GIAEqnmv~~~iAAGlA~a~~G~g~iPf~~tya~F~~~Ra~Dqir~a-~~--------~~a~v~lvG~~aG~tTlg~eG~  636 (889)
T TIGR03186       566 GISEAGAISSWIAAATSYSVHDLPMLPFYIYYSMFGFQRIGDLIWAA-AD--------QRARGFLIGATSGKTTLGGEGL  636 (889)
T ss_pred             chhhHHHHHHHHHHHHhhhhcCCCceEEEEehHHhHhhhHHHHHHHH-hh--------cCCCcEEEEECCCccCCCCCcc
Confidence            999999999  99999998    889999999776689999999998 76        46776666643 66 3 56899


Q ss_pred             Ccch--HHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHh------CCCcEEEEeCccccCcccCccccccCCC-ccccCCc
Q 020510          161 QHSH--CYAAWYASVPGLKVLSPYSSEDARGLLKAAIR------DPDPVVFLENELLYGESFPVSAEVLDSS-FCLPIGK  231 (325)
Q Consensus       161 tHs~--~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~------~~~Pv~ir~~~~l~~~~~p~~~~~~~~~-~~~~~gk  231 (325)
                      || |  .+.+++|++|||+|+.|+|+.|+..+++++++      .++|+|||..+..+..     +.+++++ ..++.|+
T Consensus       637 tH-q~~eDial~r~iPn~tv~~PaDa~E~a~iv~~~~~rm~~~~~~gp~YlRl~r~~~~~-----p~~~~~~~~~~~~gi  710 (889)
T TIGR03186       637 QH-QDGTSHLAASTVPNCRAWDPAFAYEVAVIVDEGMREMLERQRDEFYYLTVTNENYAQ-----PSLPEDRLDAVRRGI  710 (889)
T ss_pred             cc-cchHhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCCC-----CCcCCCcccchhcch
Confidence            99 5  44599999999999999999999999999877      5689999977652211     2223332 2344554


Q ss_pred             --e-EEee----eCCcEEEEEechhHHHHHHHHHHHHhc-CCcEEEEEeeeccCCCHHHHHHHHhCCCeEEEEecC---C
Q 020510          232 --A-KIER----EGKDVTITAFSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEG---F  300 (325)
Q Consensus       232 --~-~vl~----~G~dv~Iia~G~~~~~a~~Aa~~L~~~-Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe~---~  300 (325)
                        + ++++    +|+|++|+++|.++++|++|++.|+++ ||+++|||++|+||||++.+.  ++++++|+++|||   +
T Consensus       711 ~kg~y~l~~~~~~g~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~V~sv~SikpLdrd~i~--a~r~~~l~t~Eeh~~~~  788 (889)
T TIGR03186       711 LKGMYPLDPAALAAARVQLLGSGAILGEVQAAARLLRDDWGIDAAVWSVTSFTELARDGRA--AERAQRLGDAERPPSPH  788 (889)
T ss_pred             hheeeEeeccCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEEEECCCCCHhHHHHHH--HHHhCCccccccccccc
Confidence              5 7777    578999999999999999999999998 999999999999999999986  7889999999999   9


Q ss_pred             CCCCHHH-------------HHHHHHcCC
Q 020510          301 PQHGVGA-------------EIWCAFFPP  316 (325)
Q Consensus       301 ~~GGlg~-------------~v~~~l~~~  316 (325)
                      +.||||+             .|+++|.+.
T Consensus       789 v~ggLg~~~~p~va~~D~~~avae~i~~~  817 (889)
T TIGR03186       789 VAQALGATQGPVIAATDYVRAVPELIRAY  817 (889)
T ss_pred             HhhhhCCCCCCeeeecchHHHHHHHHHhh
Confidence            9999999             999999764

Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.

>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed

Probab=100.00  E-value=4.1e-43  Score=362.61  Aligned_cols=266  Identities=15%  Similarity=0.133  Sum_probs=221.6

Q ss_pred             cccccHHHHHHHHHHHHHhc---CCcEEEEecCCCCccCccc---------------------cchhHHHHhCCCceeec
Q 020510           34 VKQMMVREALNSALDEEMSA---DPKVFLMGEEVGEYQGAYK---------------------ISKGLLEKYGPERVLDT   89 (325)
Q Consensus        34 ~~~~s~~~a~~~~L~~l~~~---d~~iv~l~~D~~~~~g~~~---------------------~~~~~~~~~gp~R~i~~   89 (325)
                      ++++++|+||+++|.+|++.   +++||++++|++.+.+.-+                     ....|+++| |+||||+
T Consensus       492 ~~~~sT~~Afgr~L~~L~~~~~~~~riV~i~pD~a~t~g~~~~f~~~gi~~~~gq~y~~~d~~~~~~yke~~-PgRf~e~  570 (891)
T PRK09405        492 EREISTTMAFVRILNILLKDKEIGKRIVPIIPDEARTFGMEGLFRQIGIYNPHGQLYTPVDRDQLMYYKESK-DGQILQE  570 (891)
T ss_pred             CCcccHHHHHHHHHHHHHhccccCCcEEEeccccccccCcchhhccccccccccccccccccHHHHHHHHcC-CCcEEEe
Confidence            48899999999999999996   9999999999987555411                     124588899 9999999


Q ss_pred             hhhHHHHHH--HHHHHhcc----CCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC-CCC-CCCCCC
Q 020510           90 PITEAGFTG--IGVGAAYY----GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAA-AGVGAQ  161 (325)
Q Consensus        90 GIaE~~~vg--~A~GlA~~----G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~-~g~G~t  161 (325)
                      ||+||||++  +|+|+|.+    |++||+.+|+.|.++|++|||++++++        ++.++++++.. |.+ ++.|.|
T Consensus       571 GIAEqnmv~~~vAAGlA~a~~G~g~iPF~~tya~F~~~Ra~Dqir~a~~~--------~~~~v~iggt~gg~tl~~eG~q  642 (891)
T PRK09405        571 GINEAGAMASWIAAATSYSTHGEPMIPFYIYYSMFGFQRIGDLAWAAGDQ--------RARGFLLGGTAGRTTLNGEGLQ  642 (891)
T ss_pred             chhhhHHHHHHHHHHHhhhhcCCCceEEEEehHHhhhhhHHHHHHHHHHh--------cCCCeEEEEECccccCCCCccc
Confidence            999999999  99999988    889999999777699999999999997        57888888765 555 568999


Q ss_pred             cc-hHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----CCC--cEEEEeCccccCcccCccccccCCCccccCCce-E
Q 020510          162 HS-HCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPD--PVVFLENELLYGESFPVSAEVLDSSFCLPIGKA-K  233 (325)
Q Consensus       162 Hs-~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~--Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~~gk~-~  233 (325)
                      |+ ..+.+++|++|||+|++|+|+.|+..+++++++    .++  |.|+|....    +++. +..+ +++.+.++|. +
T Consensus       643 Hqdg~s~~l~raiPn~tv~~PADa~E~a~iv~~~l~rm~~~~~~~~yYlrl~ne----~~~~-~~~p-e~~~~~igKg~y  716 (891)
T PRK09405        643 HEDGHSHILASTIPNCVSYDPAFAYEVAVIVQDGLRRMYGEQENVFYYITVMNE----NYHQ-PAMP-EGAEEGILKGMY  716 (891)
T ss_pred             CCchhhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCC----CCCC-CCCC-cccccccceEEE
Confidence            93 244589999999999999999999999999877    445  777875311    1111 1122 3456788886 9


Q ss_pred             EeeeCC------cEEEEEechhHHHHHHHHHHHHh-cCCcEEEEEeeeccCCCHHHHHHHH---------hCCCeEEEEe
Q 020510          234 IEREGK------DVTITAFSKIVGLSLKAAEILAK-EGISAEVINLRSIRPLDRSTINASV---------RKTNRLVTVE  297 (325)
Q Consensus       234 vl~~G~------dv~Iia~G~~~~~a~~Aa~~L~~-~Gi~~~Vi~~~~l~P~d~~~l~~~~---------~~~~~vvvvE  297 (325)
                      ++++|.      |++|+++|.++++|++|++.|++ +||+++|||++|+||||.+.+....         +++..|+++|
T Consensus       717 ~Lr~g~~~~~~~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~Visv~SikpLdrd~i~~~~~~~l~~~~~~~~~~V~t~e  796 (891)
T PRK09405        717 KLETAEGKKGKPKVQLLGSGTILREVLEAAEILAEDYGVAADVWSVTSFNELARDGQDVERWNMLHPTEEPRVPYVTQVL  796 (891)
T ss_pred             EeccCCCCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEEEECCCCCHhhHHHHHHHHHhhcCcccccccchhhhhh
Confidence            999976      89999999999999999999998 6999999999999999999987766         5677899999


Q ss_pred             cCCCCCCHH-------HHHHHHHcCC
Q 020510          298 EGFPQHGVG-------AEIWCAFFPP  316 (325)
Q Consensus       298 e~~~~GGlg-------~~v~~~l~~~  316 (325)
                      +|  .||++       +.|+++|.+.
T Consensus       797 e~--~gG~~Vtv~D~~~aVae~la~~  820 (891)
T PRK09405        797 KG--AEGPVVAATDYMKLFAEQIRAF  820 (891)
T ss_pred             cc--cCCcEEEecchHHHHHHHHHHh
Confidence            98  68888       8899988654

>PRK12754 transketolase; Reviewed

Probab=100.00  E-value=9.1e-43  Score=355.67  Aligned_cols=247  Identities=18%  Similarity=0.198  Sum_probs=201.8

Q ss_pred             cccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCcc-ccchhHHHHhCCCceeechhhHHHHHHHHHHHhc-cCCeeE
Q 020510           34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY-KISKGLLEKYGPERVLDTPITEAGFTGIGVGAAY-YGLKPV  111 (325)
Q Consensus        34 ~~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~-~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~-~G~~p~  111 (325)
                      .+++++|++|+++|.++++.+++++++++|++.++.+. .-...|.++| |+||||+||+||+|+++|+|||+ .|++||
T Consensus       352 ~~~~atR~~~~~~L~~la~~~~~lv~~sADl~~s~~~~~~~~~~f~~~~-p~r~i~~GIaE~~Mv~iaaGlA~~~G~~Pf  430 (663)
T PRK12754        352 PAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDA-AGNYIHYGVREFGMTAIANGIALHGGFLPY  430 (663)
T ss_pred             ccchHHHHHHHHHHHHHHhhCCCEEEEeCCcccccCccccccccccccC-CCCeEeeccchhhHHHHHhhHHhcCCCeEE
Confidence            35779999999999999999999999999997665431 1125688889 99999999999999999999999 689999


Q ss_pred             EecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC-CCCC-CCCCCcchHHH--HHHhcCCCcEEEeeCCHHHH
Q 020510          112 VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAA-GVGAQHSHCYA--AWYASVPGLKVLSPYSSEDA  187 (325)
Q Consensus       112 v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~~-g~G~tHs~~~~--a~~~~iP~~~V~~P~d~~e~  187 (325)
                      ++||+ .|+.|++||||++ |+        +++||++++.+ |.+. .+|+|| |.+|  ++||+||||+|+.|+|..|+
T Consensus       431 ~~tf~-~F~~r~~~qir~~-a~--------~~l~V~~v~th~gi~~G~DG~TH-q~iEdla~lR~iPn~~V~~PaD~~E~  499 (663)
T PRK12754        431 TSTFL-MFVEYARNAVRMA-AL--------MKQRQVMVYTHDSIGLGEDGPTH-QPVEQVASLRVTPNMSTWRPCDQVES  499 (663)
T ss_pred             EEeeH-HHHHHHHHHHHHH-HH--------cCCCeEEEEECCccccCCCCCCc-ccHHHHHHHhcCCCcEEecCCCHHHH
Confidence            99995 5678999999996 87        47999888754 6654 599999 6554  99999999999999999999


Q ss_pred             HHHHHHhHhC-CCcEEEEeCccccCcccCccccccC--C-CccccCCceEEeeeCC---cEEEEEechhHHHHHHHHHHH
Q 020510          188 RGLLKAAIRD-PDPVVFLENELLYGESFPVSAEVLD--S-SFCLPIGKAKIEREGK---DVTITAFSKIVGLSLKAAEIL  260 (325)
Q Consensus       188 ~~~l~~a~~~-~~Pv~ir~~~~l~~~~~p~~~~~~~--~-~~~~~~gk~~vl~~G~---dv~Iia~G~~~~~a~~Aa~~L  260 (325)
                      ..+++++++. ++|+|||.+|.    +.|   .++.  . ...+..|+ ++++++.   |++||++|+++++|++|++.|
T Consensus       500 ~~~~~~a~~~~~gP~yirl~R~----~~p---~~~~~~~~~~~~~~G~-~vl~~~~~~~dv~iiatGs~v~~Al~Aa~~L  571 (663)
T PRK12754        500 AVAWKYGVERQDGPTALILSRQ----NLA---QQERTEEQLANIARGG-YVLKDCAGQPELIFIATGSEVELAVAAYEKL  571 (663)
T ss_pred             HHHHHHHHhCCCCCEEEEeCCC----CCC---CCCCccchhhhcccCc-EEEEecCCCCCEEEEEECHHHHHHHHHHHHH
Confidence            9999999987 69999998765    222   1221  1 13455665 7788864   999999999999999999999


Q ss_pred             HhcCCcEEEEEeeeccCCCHHH--HHHHHhCCC--eEEEEecCC
Q 020510          261 AKEGISAEVINLRSIRPLDRST--INASVRKTN--RLVTVEEGF  300 (325)
Q Consensus       261 ~~~Gi~~~Vi~~~~l~P~d~~~--l~~~~~~~~--~vvvvEe~~  300 (325)
                      +++||+++|||++|++|||++.  .++.+-...  ..|++|.+.
T Consensus       572 ~~~Gi~~~Vvs~~s~kp~d~q~~~y~~~il~~~~~~~v~iE~~~  615 (663)
T PRK12754        572 TAEGVKARVVSMPSTDAFDKQDAAYRESVLPKAVSARVAVEAGI  615 (663)
T ss_pred             HhhCCCcEEEEcCccCcCCCCCHHHHHhcCccccccceEeeccc
Confidence            9999999999999999999872  222222221  248888864

>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins

Probab=100.00  E-value=6.5e-42  Score=295.24  Aligned_cols=166  Identities=58%  Similarity=1.028  Sum_probs=153.1

Q ss_pred             HHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCC-ceeechhhHHHHHHHHHHHhccCCeeEEecccccH
Q 020510           41 EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPE-RVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNF  119 (325)
Q Consensus        41 ~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~-R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~~~~f  119 (325)
                      ++++++|.+++++|++++++++|++.++|++..+++|+++| |+ ||||+||+||+|+|+|+|||+.|++||+++.++.|
T Consensus         1 ~~~~~~l~~~~~~~~~vv~l~~D~~~~~g~~~~~~~~~~~~-p~~R~~~~gIaEq~~vg~AaGlA~~G~~pi~~~~~a~F   79 (167)
T cd07036           1 QAINEALDEEMERDPRVVVLGEDVGDYGGVFKVTKGLLDKF-GPDRVIDTPIAEAGIVGLAVGAAMNGLRPIVEIMFADF   79 (167)
T ss_pred             CHHHHHHHHHHhcCCCEEEECcccccCCCcchHhHHHHHhC-CCceEEeCCCcHHHHHHHHHHHHHcCCEEEEEeehHHH
Confidence            47899999999999999999999976667777779999999 88 99999999999999999999999999999544777


Q ss_pred             HHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCcchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCC
Q 020510          120 SMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPD  199 (325)
Q Consensus       120 ~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~  199 (325)
                      ++|++|||++++|+++|++|++.++||++++++|...++|+||+++++++||+||||+|++|+|+.|++.+++++++.++
T Consensus        80 l~ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg~~~~G~ths~~~~a~lr~iPg~~V~~Psd~~e~~~~l~~~~~~~~  159 (167)
T cd07036          80 ALPAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGGGIGGGAQHSQSLEAWFAHIPGLKVVAPSTPYDAKGLLKAAIRDDD  159 (167)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCCCCCcChhhhhhHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCC
Confidence            88999999999999999999999999999987655556899998999999999999999999999999999999999999


Q ss_pred             cEEEEeCc
Q 020510          200 PVVFLENE  207 (325)
Q Consensus       200 Pv~ir~~~  207 (325)
                      |++++++|
T Consensus       160 P~~~~e~k  167 (167)
T cd07036         160 PVIFLEHK  167 (167)
T ss_pred             cEEEEecC
Confidence            99998764

Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain

>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional

Probab=100.00  E-value=1e-39  Score=338.66  Aligned_cols=254  Identities=17%  Similarity=0.173  Sum_probs=203.6

Q ss_pred             cccccHHHHHHHHHHHHHhc---CCcEEEEecCCCCccCcccc---------------------chhHHHHhCCCceeec
Q 020510           34 VKQMMVREALNSALDEEMSA---DPKVFLMGEEVGEYQGAYKI---------------------SKGLLEKYGPERVLDT   89 (325)
Q Consensus        34 ~~~~s~~~a~~~~L~~l~~~---d~~iv~l~~D~~~~~g~~~~---------------------~~~~~~~~gp~R~i~~   89 (325)
                      ++++++|++|+++|.++++.   +++||++++|+++++|.-++                     ...|+++| |+|||++
T Consensus       500 ~~~isTr~Afgr~L~~L~k~~~~~~~iV~i~aDla~t~gm~~~f~~~~i~~~~gq~y~~~d~~~~~~yke~~-pgR~ie~  578 (896)
T PRK13012        500 GKEMSTTMAFVRMLGNLLKDKALGPRIVPIVADEARTFGMANLFRQVGIYSPLGQLYEPEDAGSLLYYREAK-DGQILEE  578 (896)
T ss_pred             CCcchHHHHHHHHHHHHHhccccCCCEEEeccccccccCcccccccccccccccccccccchhHHhhhhhCC-CCcEEec
Confidence            47899999999999999988   99999999999865533111                     23467889 9999999


Q ss_pred             hhhHHHHHH--HHHHHhcc----CCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC-CCC-CCCCCC
Q 020510           90 PITEAGFTG--IGVGAAYY----GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAA-AGVGAQ  161 (325)
Q Consensus        90 GIaE~~~vg--~A~GlA~~----G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~-~g~G~t  161 (325)
                      ||+||+|++  +|+|+|++    |++||+.+|+.|..+|++||+++++++        ...++++++.. +.+ +++|+|
T Consensus       579 GIaEqnm~~~~~AAG~a~a~~G~g~iPf~~tfs~F~~~R~~Dqir~a~~~--------~~~~vlig~T~gg~tlg~dG~T  650 (896)
T PRK13012        579 GITEAGAISSWIAAATSYSVHGLPMLPFYIYYSMFGFQRVGDLIWAAADQ--------RARGFLLGATAGRTTLGGEGLQ  650 (896)
T ss_pred             chhhhhhhHHHHHHHhhHHhcCCCcEEEEEehHHHHHHHHHHHHHHHHhc--------ccCCeEEEEeCcccccCCCCCC
Confidence            999999999  89999877    679999999776689999999998885        46678887765 444 569999


Q ss_pred             cchHH--HHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----C--CCcEEEEeCccccCcccCccccccCC-CccccCCce
Q 020510          162 HSHCY--AAWYASVPGLKVLSPYSSEDARGLLKAAIR----D--PDPVVFLENELLYGESFPVSAEVLDS-SFCLPIGKA  232 (325)
Q Consensus       162 Hs~~~--~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~--~~Pv~ir~~~~l~~~~~p~~~~~~~~-~~~~~~gk~  232 (325)
                      | |+.  .+++|+||||+|+.|+|..|+..+++.+++    .  +.|+|||..|..+.+     +.++++ +..+..|+ 
T Consensus       651 H-Q~~eslal~RaIPN~~V~~PADa~E~a~iv~~al~~m~~~~~~~p~YIrL~r~~~~~-----p~~~~~~~~~i~kG~-  723 (896)
T PRK13012        651 H-QDGHSHLLASTIPNCRAYDPAFAYELAVIVDDGMRRMLEEQEDVFYYLTVMNENYAQ-----PALPEGAEEGILKGM-  723 (896)
T ss_pred             C-cchHhHHHHHhCCCCEEEeCCCHHHHHHHHHHHHHHHHhccCCCeEEEEecCCCCCC-----CCCCccchhccccCc-
Confidence            9 655  489999999999999999999999998873    2  579999976653321     122222 34455666 


Q ss_pred             EEe---eeCCcEEEEEechhHHHHHHHHHHHHhc-CCcEEEEEeeeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHH--
Q 020510          233 KIE---REGKDVTITAFSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVG--  306 (325)
Q Consensus       233 ~vl---~~G~dv~Iia~G~~~~~a~~Aa~~L~~~-Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg--  306 (325)
                      +++   ++|.|++||++|+++++|++|+++|+++ ||+++|||++|++|||.+.+..           |||+..||++  
T Consensus       724 y~l~~~~~g~dv~LiasGs~v~eAl~AAe~L~~e~GI~a~V~sv~S~kpLd~d~i~~-----------E~hn~~gglg~~  792 (896)
T PRK13012        724 YRLAAAAEAPRVQLLGSGAILREVLAAARLLADDWGVDADVWSVTSFTELRRDGLAA-----------ERANLLGPAEEA  792 (896)
T ss_pred             EEEeccCCCCCEEEEEecHHHHHHHHHHHHHHhhhCCCeEEEECCCCCHhHHHHHHH-----------HHHhhcCCCccc
Confidence            555   3467999999999999999999999999 9999999999999999998732           7777777777  


Q ss_pred             --HHHHHHHc
Q 020510          307 --AEIWCAFF  314 (325)
Q Consensus       307 --~~v~~~l~  314 (325)
                        +.+.+.|.
T Consensus       793 ~~sy~~~~l~  802 (896)
T PRK13012        793 RVPYVTQCLA  802 (896)
T ss_pred             cccHHHHhhc
Confidence              54444443

>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins

Probab=100.00  E-value=2.7e-36  Score=257.99  Aligned_cols=153  Identities=29%  Similarity=0.465  Sum_probs=138.4

Q ss_pred             HHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEecccccHH
Q 020510           41 EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFS  120 (325)
Q Consensus        41 ~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~~~~f~  120 (325)
                      ++|+++|.+++++|++++++++|++.+++    +.+|.++| |+||||+||+|++|+++|+|+|+.|++|+++++ ++|+
T Consensus         1 ~~~~~~l~~~~~~~~~~v~~~~Dl~~~~~----~~~~~~~~-p~r~i~~gIaE~~~vg~A~GlA~~G~~pi~~~~-~~f~   74 (156)
T cd07033           1 KAFGEALLELAKKDPRIVALSADLGGSTG----LDKFAKKF-PDRFIDVGIAEQNMVGIAAGLALHGLKPFVSTF-SFFL   74 (156)
T ss_pred             ChHHHHHHHHHhhCCCEEEEECCCCCCCC----cHHHHHhC-CCCeEEeChhHHHHHHHHHHHHHCCCeEEEEEC-HHHH
Confidence            36899999999999999999999975433    48899999 999999999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHHHhhccccCCCCccCCEEEEeCC-CCCC-CCCCCcc-hHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhC
Q 020510          121 MQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAA-GVGAQHS-HCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD  197 (325)
Q Consensus       121 ~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~~-g~G~tHs-~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~  197 (325)
                      +|++|||++++|+        +++|+++++++ |... .+|+||+ ++++++++++||++|++|+|++|++.+++++++.
T Consensus        75 ~ra~dqi~~~~a~--------~~~pv~~~~~~~g~~~~~~G~tH~~~~~~a~~~~iPg~~v~~Ps~~~~~~~ll~~a~~~  146 (156)
T cd07033          75 QRAYDQIRHDVAL--------QNLPVKFVGTHAGISVGEDGPTHQGIEDIALLRAIPNMTVLRPADANETAAALEAALEY  146 (156)
T ss_pred             HHHHHHHHHHHhc--------cCCCeEEEEECCcEecCCCCcccchHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHhC
Confidence            9999999999997        47999999875 4544 5999994 4667999999999999999999999999999999


Q ss_pred             CCcEEEEeCc
Q 020510          198 PDPVVFLENE  207 (325)
Q Consensus       198 ~~Pv~ir~~~  207 (325)
                      ++|+|+|.+|
T Consensus       147 ~~P~~irl~~  156 (156)
T cd07033         147 DGPVYIRLPR  156 (156)
T ss_pred             CCCEEEEeeC
Confidence            9999999753

Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included

>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component

Probab=100.00  E-value=2.2e-35  Score=306.88  Aligned_cols=272  Identities=19%  Similarity=0.205  Sum_probs=226.7

Q ss_pred             ccccHHHHHHHHHHHHHhcCCcEEEEecCCCC--------------ccCccccchhHHHHhCCCceeechhhHHHHHHHH
Q 020510           35 KQMMVREALNSALDEEMSADPKVFLMGEEVGE--------------YQGAYKISKGLLEKYGPERVLDTPITEAGFTGIG  100 (325)
Q Consensus        35 ~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~--------------~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A  100 (325)
                      +.++|.+|...++.++|++|++|+++++|++.              .+|.|+.+.+|.++||+.|++|++|+|.+++|++
T Consensus       584 ~~~~~~~A~~~A~~~~l~~~~~V~l~GeDv~rGtFshRHavl~dq~~g~~~~~~~~l~~~~g~~rV~nsplSE~a~~G~~  663 (929)
T TIGR00239       584 KLFDWGGAENLAFATLVDDGIPVRLSGEDSERGTFFQRHAVLHDQSNGSTYTPLQHLHNGQGAFRVWNSVLSEESVLGFE  663 (929)
T ss_pred             CCccHHHHHHHHHHHHHhcCCCEEEEeeeCCCcccccccccccccccCceeecccchhhhcCCeeEEcCCccHHHHHHHH
Confidence            45889999999999999999999999999987              5666799999999999999999999999999999


Q ss_pred             HHHhccCCeeE--EecccccHHH---HHHHHHHHH-HhhccccCCCCccCCEEEEeCCCCCCCCCCCcchHHHHHH--hc
Q 020510          101 VGAAYYGLKPV--VEFMTFNFSM---QAIDHIINS-AAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWY--AS  172 (325)
Q Consensus       101 ~GlA~~G~~p~--v~~~~~~f~~---ra~dqi~~~-~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tHs~~~~a~~--~~  172 (325)
                      .|+|+.|.+|+  ++.++.+|++   .++|||.+. .+++++++|      +|++.+.|..++.+.+||+++|++|  .+
T Consensus       664 ~G~a~~g~~~l~i~E~qfgDF~~~AQv~~Dq~i~~~~~K~~~~sg------lv~~~p~G~~g~g~~hsS~~~E~~lql~~  737 (929)
T TIGR00239       664 YGYATTSPRTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGQMSG------LVMLLPHGYEGQGPEHSSGRLERFLQLAA  737 (929)
T ss_pred             HhHHhcCCCCceEEEEeccchhcchHHHHHHHHHHHHHHhcCccC------eEEEecCcCCCCCchhhccCHHHHHHHhC
Confidence            99999998774  9999999987   779999988 578766544      8999888855445566678999999  88


Q ss_pred             CCCcEEEeeCCHHHHHHHHH-HhHhC-CCcEEEEeCccccCcccC--ccccccCCCccccCCceE-----EeeeCCcEEE
Q 020510          173 VPGLKVLSPYSSEDARGLLK-AAIRD-PDPVVFLENELLYGESFP--VSAEVLDSSFCLPIGKAK-----IEREGKDVTI  243 (325)
Q Consensus       173 iP~~~V~~P~d~~e~~~~l~-~a~~~-~~Pv~ir~~~~l~~~~~p--~~~~~~~~~~~~~~gk~~-----vl~~G~dv~I  243 (325)
                      .|||+|+.|++|.|++.+|+ ++++. ++|+++.+++.||+.+..  ...+++++.|..+++...     +.+++.+.+|
T Consensus       738 ~~gl~Vv~pstpad~~~lLrrqa~r~~~~Pvi~~~~K~L~r~~~a~S~~~e~~~~~f~~~i~~~~~~~~~~~~~~v~~vv  817 (929)
T TIGR00239       738 EQNMQVCVPTTPAQVFHILRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELAEGTFQPVIGEIEESGLSLDPEGVKRLV  817 (929)
T ss_pred             CCCCEEEecCCHHHHHHHHHHHHHhCCCCCEEEeccHhhhcCccccCccccCCCCCcccccccccccccccCccCCcEEE
Confidence            99999999999999999999 79996 899999999998864321  113455566665664321     2233445556


Q ss_pred             EEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCC---eEEEEecCCCCCCHHHHHHHHHc
Q 020510          244 TAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN---RLVTVEEGFPQHGVGAEIWCAFF  314 (325)
Q Consensus       244 ia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~---~vvvvEe~~~~GGlg~~v~~~l~  314 (325)
                      +++| ++..++++ +.++++|+++.|||+++|+|||.++|.++++||.   ++|++.|...+.|-.+.|...|.
T Consensus       818 ~~sg-~v~~~l~~-~~~~~~~~~v~iirle~L~Pf~~~~i~~sl~k~~~~~~~vw~qEep~n~Gaw~~v~~rl~  889 (929)
T TIGR00239       818 LCSG-KVYYDLHE-QRRKNGQKDVAIVRIEQLYPFPHKAVKEVLQQYPNLKEIVWCQEEPLNMGAWYYSQPHLR  889 (929)
T ss_pred             EECc-hHHHHHHH-HHHhcCCCCEEEEEeeeeCCCCHHHHHHHHHhcCCCCeEEEEeccCCCCCCHHHHHHHHH
Confidence            6666 77777777 6677789999999999999999999999999996   79999999999999988887775

The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.

>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed

Probab=100.00  E-value=2.2e-35  Score=308.01  Aligned_cols=271  Identities=20%  Similarity=0.204  Sum_probs=229.6

Q ss_pred             ccccHHHHHHHHHHHHHhcCCcEEEEecCCCC--------------ccCccccchhHHHHhCCCceeechhhHHHHHHHH
Q 020510           35 KQMMVREALNSALDEEMSADPKVFLMGEEVGE--------------YQGAYKISKGLLEKYGPERVLDTPITEAGFTGIG  100 (325)
Q Consensus        35 ~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~--------------~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A  100 (325)
                      +.++|.+|...++.++|++|++|++.++|++.              .+|.|+.+.+|.++||++|++|++|+|.+++|++
T Consensus       582 ~~idw~~Ae~lA~~s~l~~~~~v~l~GeDv~rgtFshRHavl~dq~~gg~~~~~~~l~~~~g~~rV~nsplsE~~~~G~~  661 (924)
T PRK09404        582 KPIDWGMAEALAFASLLDEGYPVRLSGQDSGRGTFSHRHAVLHDQKTGETYIPLNHLSEGQASFEVYDSPLSEEAVLGFE  661 (924)
T ss_pred             CCcCHHHHHHHHHHHHHhCCCCEEEEeeeCCCCcccccchhccccCCCCEeccccchhhhcCCceEecCcchHHHHHHHH
Confidence            55789999999999999999999999999985              6789999999999999999999999999999999


Q ss_pred             HHHhccCCee--EEecccccHHH---HHHHHHHHHH-hhccccCCCCccCCEEEEeCCCCCCCCCCCcchHHHHHHhcC-
Q 020510          101 VGAAYYGLKP--VVEFMTFNFSM---QAIDHIINSA-AKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASV-  173 (325)
Q Consensus       101 ~GlA~~G~~p--~v~~~~~~f~~---ra~dqi~~~~-a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tHs~~~~a~~~~i-  173 (325)
                      .|+|+.|.+|  +++.++.+|++   .++||+.+.+ +++++++      ++|++.+.|..++.+.+||+++|++|.+. 
T Consensus       662 ~G~a~~g~~~l~i~E~qfgDF~~~AQ~~~Dq~i~~~~~k~~~~s------glv~~~p~G~~g~g~~hsS~~~E~~l~~~~  735 (924)
T PRK09404        662 YGYSTAEPNTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGRLS------GLVMLLPHGYEGQGPEHSSARLERFLQLCA  735 (924)
T ss_pred             HHHHhcCCCCceEEEEeccccccchHHHHHHHHHHHHHHhcCcc------CeEEEecCcCCCCChhhhccCHHHHHHhCC
Confidence            9999999964  99999999988   6699999986 7776554      49999888854444455667999999776 


Q ss_pred             -CCcEEEeeCCHHHHHHHHHHh-HhC-CCcEEEEeCccccCcccCc--cccccCCCccccCCceEEeeeCCcE--EEEEe
Q 020510          174 -PGLKVLSPYSSEDARGLLKAA-IRD-PDPVVFLENELLYGESFPV--SAEVLDSSFCLPIGKAKIEREGKDV--TITAF  246 (325)
Q Consensus       174 -P~~~V~~P~d~~e~~~~l~~a-~~~-~~Pv~ir~~~~l~~~~~p~--~~~~~~~~~~~~~gk~~vl~~G~dv--~Iia~  246 (325)
                       |||+|+.|++|.|++.+|+.+ ++. .+|+++.+++.||+.+...  ..+++...|...+++.. .++++|+  +||||
T Consensus       736 ~~gl~Vv~pstpad~~~lLr~q~~r~~r~Pvv~~~pK~L~r~~~~~s~~~e~~~~~f~~vi~~~~-~~~~~~v~r~iv~~  814 (924)
T PRK09404        736 EDNMQVCNPTTPAQYFHLLRRQALRPFRKPLVVMTPKSLLRHPLAVSSLEELAEGSFQPVIGDID-ELDPKKVKRVVLCS  814 (924)
T ss_pred             CCCCEEEecCCHHHHHHHHHHHHhhCCCCCEEEeccHHHhCCCCCCCCHHHcCCCCceeeccccc-ccCccceeEEEEEc
Confidence             699999999999999999985 466 4999999999988753211  12343344554566655 5677899  79999


Q ss_pred             chhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCC---eEEEEecCCCCCCHHHHHHHHHc
Q 020510          247 SKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN---RLVTVEEGFPQHGVGAEIWCAFF  314 (325)
Q Consensus       247 G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~---~vvvvEe~~~~GGlg~~v~~~l~  314 (325)
                      |.+++.++++++.+.  ..++.|||+++|+|||.++|.++++|++   ++|+++|...+.|.++.|...|.
T Consensus       815 Gk~~~~~~~a~~~~~--~~~v~ii~le~L~P~~~~~i~~~v~k~~~~~~~v~vqEe~~n~G~~~~~~~~~~  883 (924)
T PRK09404        815 GKVYYDLLEARRKRG--IDDVAIVRIEQLYPFPHEELAAELAKYPNAKEVVWCQEEPKNQGAWYFIQHHLE  883 (924)
T ss_pred             CHHHHHHHHHHHhCC--CCCEEEEEeeeeCCCCHHHHHHHHHhcCCCCeEEEEeeCCCCCCcHHHHHHHHH
Confidence            999999999988553  3499999999999999999999999984   89999999999999999987774

>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2

Probab=100.00  E-value=3.9e-34  Score=249.81  Aligned_cols=166  Identities=37%  Similarity=0.587  Sum_probs=133.5

Q ss_pred             ccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccC--CeeEE
Q 020510           35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG--LKPVV  112 (325)
Q Consensus        35 ~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G--~~p~v  112 (325)
                      +|+++|++|+++|.+++++|++++++++|++  ++++..+.++...+||+||||+||+|++|+|+|+|||+.|  ++|++
T Consensus         1 ~k~~~~~a~~~~l~~~~~~d~~vv~~~~D~~--~~~~~~~~~~~~~~~~~r~i~~gIaE~~~vg~a~GlA~~G~~~~~~~   78 (178)
T PF02779_consen    1 KKISMRDAFGEALAELAEEDPRVVVIGADLG--GGTFGVTFGLAFPFGPGRFINTGIAEQNMVGMAAGLALAGGLRPPVE   78 (178)
T ss_dssp             -EEEHHHHHHHHHHHHHHHTTTEEEEESSTH--HHHTSTTTTHHBHHTTTTEEE--S-HHHHHHHHHHHHHHSSSEEEEE
T ss_pred             CCccHHHHHHHHHHHHHhhCCCEEEEECCcC--cchhhhhhhccccCCCceEEecCcchhhccceeeeeeecccccceeE
Confidence            5789999999999999999999999999997  4555555566677778899999999999999999999999  66666


Q ss_pred             ecccccHHH----HHHHHHHHHHhhccccCCCCccCCEEEEeCCCC-CCCCCCCc-chHHHHHHhcCCCcEEEeeCCHHH
Q 020510          113 EFMTFNFSM----QAIDHIINSAAKSNYMSSGQISVPIVFRGPNGA-AAGVGAQH-SHCYAAWYASVPGLKVLSPYSSED  186 (325)
Q Consensus       113 ~~~~~~f~~----ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~-~~g~G~tH-s~~~~a~~~~iP~~~V~~P~d~~e  186 (325)
                      .+| +.|+.    |++||++++.+++      +.+++ ++... |. .+++|+|| +++++++|+++|||+|++|+|+.|
T Consensus        79 ~~f-~~F~~~~q~r~~~~~~~~~~~~------~~~v~-v~~~~-g~~~~~~G~tH~s~~d~~~~~~iPg~~v~~Psd~~e  149 (178)
T PF02779_consen   79 STF-ADFLTPAQIRAFDQIRNDMAYG------QLPVP-VGTRA-GLGYGGDGGTHHSIEDEAILRSIPGMKVVVPSDPAE  149 (178)
T ss_dssp             EEE-GGGGGGGHHHHHHHHHHHHHHH------TS-EE-EEEEE-SGGGSTTGTTTSSSSHHHHHHTSTTEEEEE-SSHHH
T ss_pred             eec-cccccccchhhhhhhhhhhhcc------cceec-ceeec-CcccccccccccccccccccccccccccccCCCHHH
Confidence            666 55555    9999999999975      34555 22222 33 34578887 568889999999999999999999


Q ss_pred             HHHHHHHhHh--CCCcEEEEeCccccC
Q 020510          187 ARGLLKAAIR--DPDPVVFLENELLYG  211 (325)
Q Consensus       187 ~~~~l~~a~~--~~~Pv~ir~~~~l~~  211 (325)
                      ++.+++++++  .++|+|||++|.+|+
T Consensus       150 ~~~~l~~a~~~~~~~P~~ir~~r~~~~  176 (178)
T PF02779_consen  150 AKGLLRAAIRRESDGPVYIREPRGLYP  176 (178)
T ss_dssp             HHHHHHHHHHSSSSSEEEEEEESSEES
T ss_pred             HHHHHHHHHHhCCCCeEEEEeeHHhCC
Confidence            9999999999  679999999987653

2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....

>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]

Probab=99.97  E-value=3.5e-30  Score=254.29  Aligned_cols=263  Identities=20%  Similarity=0.249  Sum_probs=208.2

Q ss_pred             ccccCcccccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccc-cchhHH-HHhCCCceeechhhHHHHHHHHHHHh
Q 020510           27 LRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYK-ISKGLL-EKYGPERVLDTPITEAGFTGIGVGAA  104 (325)
Q Consensus        27 ~~~~~~~~~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~-~~~~~~-~~~gp~R~i~~GIaE~~~vg~A~GlA  104 (325)
                      ++++...++.+.+|++..++|..+....|+++..++|++.|+.+.. -...|. +.| .+|+|..||.|++|.+++.|||
T Consensus       344 ~~~~~~~~~~~ATR~as~~~L~~l~~~~p~l~GGSADLa~Sn~T~~~~~~~~~~~~~-~gr~i~~GVREf~M~AimNGia  422 (663)
T COG0021         344 LPKFEANGKSIATRKASGKALNALAKKLPELIGGSADLAPSNLTKISGSGDFSPENY-AGRYIHFGVREFAMAAIMNGIA  422 (663)
T ss_pred             hhhhcccccccchHHHHHHHHHHHHhhCccccccCcccccCccccccccCCCCCCCC-CCCeeEEeeHHHHHHHHHHhHH
Confidence            3444444456899999999999999999999999999997765531 112233 567 7999999999999999999999


Q ss_pred             ccC-CeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeC-CCCC-CCCCCCcchHHH--HHHhcCCCcEEE
Q 020510          105 YYG-LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAA-AGVGAQHSHCYA--AWYASVPGLKVL  179 (325)
Q Consensus       105 ~~G-~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~-~g~G~tHs~~~~--a~~~~iP~~~V~  179 (325)
                      +.| ++||..||.. |+.++..++|+. |+        +++|++++.. |+.. +++|+|| |++|  +.||.|||+.|+
T Consensus       423 lhGg~~pyggTFlv-FsdY~r~AiRla-AL--------m~l~~~~V~THDSIgvGEDGPTH-qPiEqLa~LRaiPN~~V~  491 (663)
T COG0021         423 LHGGFIPYGGTFLV-FSDYARPAVRLA-AL--------MGLPVIYVFTHDSIGVGEDGPTH-QPVEQLASLRAIPNLSVI  491 (663)
T ss_pred             HhcCceeecceehh-hHhhhhHHHHHH-Hh--------cCCCeEEEEecCceecCCCCCCC-CcHHHHHHhhccCCceeE
Confidence            996 6999999854 699999999984 55        4788888865 4665 5599999 8776  999999999999


Q ss_pred             eeCCHHHHHHHHHHhHhC-CCcEEEEeCccccCcccCccccccCCCccccCCceEEeee----CCcEEEEEechhHHHHH
Q 020510          180 SPYSSEDARGLLKAAIRD-PDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIERE----GKDVTITAFSKIVGLSL  254 (325)
Q Consensus       180 ~P~d~~e~~~~l~~a~~~-~~Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~~gk~~vl~~----G~dv~Iia~G~~~~~a~  254 (325)
                      .|+|..|+..++++|++. ++|+++..+|.    +.|   .++.++......+++++++    +.|++||++|+.++.|+
T Consensus       492 RPaD~~Et~~aw~~Al~~~~gPt~LiltRQ----nlp---~l~~t~~~~~~kGaYvl~~~~~~~pd~iliAtGSEV~lAv  564 (663)
T COG0021         492 RPADANETAAAWKYALERKDGPTALILTRQ----NLP---VLERTDLEGVAKGAYVLKDSGGEDPDVILIATGSEVELAV  564 (663)
T ss_pred             ecCChHHHHHHHHHHHhcCCCCeEEEEecC----CCC---ccCCCccccccCccEEEeecCCCCCCEEEEecccHHHHHH
Confidence            999999999999999995 78999987765    443   2333333333456788877    47999999999999999


Q ss_pred             HHHHHHHhcCCcEEEEEeeeccCCCHHH--HHHHHhCCC--eEEEEecCCCCCCHHHHH
Q 020510          255 KAAEILAKEGISAEVINLRSIRPLDRST--INASVRKTN--RLVTVEEGFPQHGVGAEI  309 (325)
Q Consensus       255 ~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~--l~~~~~~~~--~vvvvEe~~~~GGlg~~v  309 (325)
                      +|++.|+++|++++||++++...|+.+.  -++++-...  +-|.+|-... .|+...+
T Consensus       565 ~Aa~~L~~~~~~vrVVS~P~~~~fe~Q~~~Y~~~vL~~~v~~rvaiEa~~~-~~W~ky~  622 (663)
T COG0021         565 EAAKELEAEGIKVRVVSMPSFELFEKQDEEYRESVLPGAVTARVAIEAGSA-LGWYKYV  622 (663)
T ss_pred             HHHHHHHhcCCceEEEeccchHHHHcCCHHHHHhhccCCccceEEEEeccc-cchhhhc
Confidence            9999999889999999999999998763  333333332  2477887764 4454443

>smart00861 Transket_pyr Transketolase, pyrimidine binding domain

Probab=99.97  E-value=6.3e-30  Score=220.98  Aligned_cols=155  Identities=36%  Similarity=0.535  Sum_probs=129.3

Q ss_pred             cHHHHHHHHHHHHHhcCC-cEEEEecCCCCccCccccchhHHHHhCCC-------ceeechhhHHHHHHHHHHHhccCCe
Q 020510           38 MVREALNSALDEEMSADP-KVFLMGEEVGEYQGAYKISKGLLEKYGPE-------RVLDTPITEAGFTGIGVGAAYYGLK  109 (325)
Q Consensus        38 s~~~a~~~~L~~l~~~d~-~iv~l~~D~~~~~g~~~~~~~~~~~~gp~-------R~i~~GIaE~~~vg~A~GlA~~G~~  109 (325)
                      +++++++++|.+++++|+ +++++++|++.++++    . ..+.| |+       ||+|+||+|++|+++|+|+|+.|++
T Consensus         1 ~~~~~~~~~l~~~~~~~~~~v~~~~~D~~~~~~~----~-~~~~~-~~~~~~~~~R~~~~gIaE~~~vg~a~GlA~~G~~   74 (168)
T smart00861        1 ATRKAFGEALAELAERDPERVVVSGADVGGSTGL----D-RGGVF-PDTKGLGPGRVIDTGIAEQAMVGFAAGLALAGLR   74 (168)
T ss_pred             CHHHHHHHHHHHHHhhCCCcEEEEehhhCcCcCC----C-cCCcc-CCCCCCCCccEEEcCcCHHHHHHHHHHHHHcCCC
Confidence            478999999999999955 999999999765432    1 13455 44       5999999999999999999999999


Q ss_pred             eEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCC-CCCCCCc-chHHHHHHhcCCCcEEEeeCCHHHH
Q 020510          110 PVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA-AGVGAQH-SHCYAAWYASVPGLKVLSPYSSEDA  187 (325)
Q Consensus       110 p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~-~g~G~tH-s~~~~a~~~~iP~~~V~~P~d~~e~  187 (325)
                      ||++++++| +.|++||+++++++        .++|+++....|.. +++|+|| +++++++++++||++|++|+|+.|+
T Consensus        75 pi~~~~~~f-~~~a~~~~~~~~~~--------~~~~~v~~~~~g~~~g~~G~tH~~~~~~~~~~~iP~~~v~~P~~~~e~  145 (168)
T smart00861       75 PVVAIFFTF-FDRAKDQIRSDGAM--------GRVPVVVRHDSGGGVGEDGPTHHSQEDEALLRAIPGLKVVAPSDPAEA  145 (168)
T ss_pred             cEEEeeHHH-HHHHHHHHHHhCcc--------cCCCEEEEecCccccCCCCccccchhHHHHHhcCCCcEEEecCCHHHH
Confidence            999999665 55999999998874        26888888755444 4579877 4577799999999999999999999


Q ss_pred             HHHHHHhHhC-CCcEEEEeCc
Q 020510          188 RGLLKAAIRD-PDPVVFLENE  207 (325)
Q Consensus       188 ~~~l~~a~~~-~~Pv~ir~~~  207 (325)
                      +.+++++++. ++|+|||.++
T Consensus       146 ~~~l~~a~~~~~~p~~i~~~~  166 (168)
T smart00861      146 KGLLRAAIRRDDGPPVIRLER  166 (168)
T ss_pred             HHHHHHHHhCCCCCEEEEecC
Confidence            9999999976 5799998654

Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.

>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated

Probab=99.89  E-value=1.8e-20  Score=179.87  Aligned_cols=260  Identities=16%  Similarity=0.133  Sum_probs=178.3

Q ss_pred             ccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEeccc
Q 020510           37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMT  116 (325)
Q Consensus        37 ~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~~  116 (325)
                      ++-.+|++.+...   .+.+++.--+ ...++...-...++.+++ ...|++ ..+|..++++|.|+|.+|.|.++.|. 
T Consensus         7 ~~GNeAiA~ga~~---ag~~~~a~YP-iTPsTeI~e~la~~~~~~-~~~~vq-~E~E~aA~~~a~GAs~aG~Ra~taTS-   79 (352)
T PRK07119          7 MKGNEAIAEAAIR---AGCRCYFGYP-ITPQSEIPEYMSRRLPEV-GGVFVQ-AESEVAAINMVYGAAATGKRVMTSSS-   79 (352)
T ss_pred             ehHHHHHHHHHHH---hCCCEEEEeC-CCCchHHHHHHHHHHHHh-CCEEEe-eCcHHHHHHHHHHHHhhCCCEEeecC-
Confidence            3455666665543   4677776555 233443322223344456 367888 89999999999999999999999997 


Q ss_pred             ccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCc-chHHHHHH-h--c--CCCcEEEeeCCHHHHHHH
Q 020510          117 FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQH-SHCYAAWY-A--S--VPGLKVLSPYSSEDARGL  190 (325)
Q Consensus       117 ~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tH-s~~~~a~~-~--~--iP~~~V~~P~d~~e~~~~  190 (325)
                      +.++..+++.|-. ++.        ..+|++++.....+.+.|.++ .|.+.-+. +  .  .-++.|++|+|++|++++
T Consensus        80 g~Gl~lm~E~l~~-a~~--------~e~P~v~v~v~R~~p~~g~t~~eq~D~~~~~~~~ghgd~~~~vl~p~~~qEa~d~  150 (352)
T PRK07119         80 SPGISLKQEGISY-LAG--------AELPCVIVNIMRGGPGLGNIQPSQGDYFQAVKGGGHGDYRLIVLAPSSVQEMVDL  150 (352)
T ss_pred             cchHHHHHHHHHH-HHH--------ccCCEEEEEeccCCCCCCCCcchhHHHHHHHhcCCCCCcceEEEeCCCHHHHHHH
Confidence            5567788898855 332        579988876532222233343 24443222 2  1  335889999999999999


Q ss_pred             HHHhHh----CCCcEEEEeCccccCc--c--cCccccc--cCCCccc-c-----------------------------C-
Q 020510          191 LKAAIR----DPDPVVFLENELLYGE--S--FPVSAEV--LDSSFCL-P-----------------------------I-  229 (325)
Q Consensus       191 l~~a~~----~~~Pv~ir~~~~l~~~--~--~p~~~~~--~~~~~~~-~-----------------------------~-  229 (325)
                      ..+|++    .+-||+++.+..+-..  +  .|....+  +.+++.+ .                             + 
T Consensus       151 ~~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  230 (352)
T PRK07119        151 TMLAFDLADKYRNPVMVLGDGVLGQMMEPVEFPPRKKRPLPPKDWAVTGTKGRRKNIITSLFLDPEELEKHNLRLQEKYA  230 (352)
T ss_pred             HHHHHHHHHHhCCCEEEEcchhhhCceeeecCCchhhcccCCCCCccCCCCCCceeccCCcccCHHHHHHHHHHHHHHHH
Confidence            999998    4679999976432100  0  0000000  0000000 0                             0 


Q ss_pred             ------CceEEe-eeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCCeEEEEecCCCC
Q 020510          230 ------GKAKIE-REGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQ  302 (325)
Q Consensus       230 ------gk~~vl-~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~  302 (325)
                            ...+.. .++.|++||++|+++..+++|++.|+++|++++|+++++++|||.+.|.++++++++|+|+|++  .
T Consensus       231 ~~~~~~~~~e~~~~~dad~~iva~Gs~~~~a~eA~~~L~~~Gi~v~vi~~~~l~Pfp~~~i~~~l~~~k~VivvE~n--~  308 (352)
T PRK07119        231 KIEENEVRYEEYNTEDAELVLVAYGTSARIAKSAVDMAREEGIKVGLFRPITLWPFPEKALEELADKGKGFLSVEMS--M  308 (352)
T ss_pred             HHHhhCCcceeecCCCCCEEEEEcCccHHHHHHHHHHHHHcCCeEEEEeeceecCCCHHHHHHHHhCCCEEEEEeCC--c
Confidence                  000111 1358999999999999999999999999999999999999999999999999999999999998  4


Q ss_pred             CCHHHHHHHHHc
Q 020510          303 HGVGAEIWCAFF  314 (325)
Q Consensus       303 GGlg~~v~~~l~  314 (325)
                      |.|..+|...+.
T Consensus       309 g~l~~ei~~~~~  320 (352)
T PRK07119        309 GQMVEDVRLAVN  320 (352)
T ss_pred             cHHHHHHHHHhC
Confidence            789999997775

>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated

Probab=99.86  E-value=2.1e-19  Score=173.77  Aligned_cols=260  Identities=18%  Similarity=0.170  Sum_probs=177.2

Q ss_pred             ccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEeccc
Q 020510           37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMT  116 (325)
Q Consensus        37 ~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~~  116 (325)
                      ++-.+|++.+...   ...+++..-+ ...++...-...++.+++ ...|+++- +|..++++|.|+|.+|.|.++.|+.
T Consensus         7 ~~GNeAiA~ga~~---ag~~~~a~YP-ITPsTei~e~la~~~~~~-~~~~vq~E-~E~aA~~~a~GAs~aG~Ra~TaTSg   80 (376)
T PRK08659          7 LQGNEACAEGAIA---AGCRFFAGYP-ITPSTEIAEVMARELPKV-GGVFIQME-DEIASMAAVIGASWAGAKAMTATSG   80 (376)
T ss_pred             eehHHHHHHHHHH---hCCCEEEEcC-CCChHHHHHHHHHhhhhh-CCEEEEeC-chHHHHHHHHhHHhhCCCeEeecCC
Confidence            4456666666543   4666666554 223333221112233334 25677764 9999999999999999999999984


Q ss_pred             ccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC--CCCCCCCCCcchHHH--HHHh---cCCCcEEEeeCCHHHHHH
Q 020510          117 FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN--GAAAGVGAQHSHCYA--AWYA---SVPGLKVLSPYSSEDARG  189 (325)
Q Consensus       117 ~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~--G~~~g~G~tHs~~~~--a~~~---~iP~~~V~~P~d~~e~~~  189 (325)
                       ..+....+++-...+         ..+|+|++..+  |++.|.-..++|.+.  ..+.   .. ++.|++|+|++|+++
T Consensus        81 -~Gl~lm~E~~~~a~~---------~e~P~Viv~~~R~gp~tg~p~~~~q~D~~~~~~~~hgd~-~~ivl~p~~~QEa~d  149 (376)
T PRK08659         81 -PGFSLMQENIGYAAM---------TETPCVIVNVQRGGPSTGQPTKPAQGDMMQARWGTHGDH-PIIALSPSSVQECFD  149 (376)
T ss_pred             -CcHHHHHHHHHHHHH---------cCCCEEEEEeecCCCCCCCCCCcCcHHHHHHhcccCCCc-CcEEEeCCCHHHHHH
Confidence             456778888865444         57998888653  444444333446554  3322   23 457999999999999


Q ss_pred             HHHHhHh----CCCcEEEEeCccccCc--c--cCccccc-------cC------CCcc-----c----------------
Q 020510          190 LLKAAIR----DPDPVVFLENELLYGE--S--FPVSAEV-------LD------SSFC-----L----------------  227 (325)
Q Consensus       190 ~l~~a~~----~~~Pv~ir~~~~l~~~--~--~p~~~~~-------~~------~~~~-----~----------------  227 (325)
                      +...|++    .+.||+++.+..+-..  .  .|....+       +.      .+|.     +                
T Consensus       150 ~~~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (376)
T PRK08659        150 LTIRAFNLAEKYRTPVIVLADEVVGHMREKVVLPEPDEIEIIERKLPKVPPEAYKPFDDPEGGVPPMPAFGDGYRFHVTG  229 (376)
T ss_pred             HHHHHHHHHHHHCCCEEEEechHhhCCcccccCCChhhccccccccCCCCccccCCCCCCCCCCCCCccCCCCCeEEeCC
Confidence            9999987    4679999865321000  0  0000000       00      0000     0                


Q ss_pred             ----c---------------------C-------CceEEee-eCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeee
Q 020510          228 ----P---------------------I-------GKAKIER-EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRS  274 (325)
Q Consensus       228 ----~---------------------~-------gk~~vl~-~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~  274 (325)
                          +                     +       +..+... ++.|++||++|+++..+++|++.|+++|++++++++++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~ad~~iv~~Gs~~~~a~eAv~~Lr~~G~~v~~l~~~~  309 (376)
T PRK08659        230 LTHDERGFPTTDPETHEKLVRRLVRKIEKNRDDIVLYEEYMLEDAEVVVVAYGSVARSARRAVKEAREEGIKVGLFRLIT  309 (376)
T ss_pred             ccccCCCCcCcCHHHHHHHHHHHHHHHHHHHhhcCCceeecCCCCCEEEEEeCccHHHHHHHHHHHHhcCCceEEEEeCe
Confidence                0                     0       0011111 46899999999999999999999999999999999999


Q ss_pred             ccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcC
Q 020510          275 IRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFP  315 (325)
Q Consensus       275 l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~  315 (325)
                      ++|||.+.|.+++++.++|+|+|+|  .|.+..++...+..
T Consensus       310 l~Pfp~~~i~~~~~~~k~VivvEe~--~g~l~~el~~~~~~  348 (376)
T PRK08659        310 VWPFPEEAIRELAKKVKAIVVPEMN--LGQMSLEVERVVNG  348 (376)
T ss_pred             ecCCCHHHHHHHHhcCCEEEEEeCC--HHHHHHHHHHHhCC
Confidence            9999999999999999999999999  48888888888753

>PRK05261 putative phosphoketolase; Provisional

Probab=99.84  E-value=1e-19  Score=187.24  Aligned_cols=293  Identities=15%  Similarity=0.112  Sum_probs=195.9

Q ss_pred             hhhhHHhhhhcCCCCcccccccc--ccccccC---c------ccccccHHHHHHHHHHHHHhcCCc-EEEEecCCCCccC
Q 020510            2 WGIIRQKVAAGGGSPVARIRPVV--SNLRNYS---S------AVKQMMVREALNSALDEEMSADPK-VFLMGEEVGEYQG   69 (325)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~------~~~~~s~~~a~~~~L~~l~~~d~~-iv~l~~D~~~~~g   69 (325)
                      |++++++-.|.|..|.+......  ..++.|.   .      .....++|. +++.|.++++.||+ +++.++|+..|..
T Consensus       345 ~~l~p~g~~r~~~~P~ang~~~~~~l~lp~~~~~~~~~~~~g~~~~~atr~-~g~~l~~v~~~np~~frvf~pDe~~SNr  423 (785)
T PRK05261        345 AALAPKGDRRMGANPHANGGLLLRDLRLPDFRDYAVPVGKPGAVMAEATRV-LGKYLRDVIKLNPDNFRIFGPDETASNR  423 (785)
T ss_pred             HHhccCchhhhcCCchhcCCcCccccCCCchHhhcccccCCCccccccHHH-HHHHHHHHHHhCCCceEEEcCCcchhhc
Confidence            67788888999999988765322  2223332   1      224667888 99999999999999 8889999987655


Q ss_pred             ccccchh-------------HHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEecccccH--HHHHHHHH----HHH
Q 020510           70 AYKISKG-------------LLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNF--SMQAIDHI----INS  130 (325)
Q Consensus        70 ~~~~~~~-------------~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~~~~f--~~ra~dqi----~~~  130 (325)
                      ...+.+.             ..... .+|+|+ +++|++|.|++.|+++.|.++++++|.+|.  +..++.|+    |..
T Consensus       424 l~~~f~~t~r~~~~~~~~~d~~~~~-~Grvie-~LsEh~~~g~~~Gy~LtG~~~~~~sYeaF~~ivd~m~~q~~kw~r~~  501 (785)
T PRK05261        424 LQAVFEVTDRQWMAEILPYDEHLAP-DGRVME-VLSEHLCEGWLEGYLLTGRHGFFSSYEAFIHIVDSMFNQHAKWLKVA  501 (785)
T ss_pred             cHhHHhhhccccccccCCcccccCC-CCCeee-eecHHHHHHHHHHHHhcCCCcceecHHHHHHHHHHHHHHHHHHHHHH
Confidence            4222110             01123 379999 999999999999999999999999997654  26677777    543


Q ss_pred             HhhccccCCCCccCCEEEEeCCCCC-CCCCCCcchH---HH--HHHhcCCCcEEEeeCCHHHHHHHHHHhHhC-CCcEEE
Q 020510          131 AAKSNYMSSGQISVPIVFRGPNGAA-AGVGAQHSHC---YA--AWYASVPGLKVLSPYSSEDARGLLKAAIRD-PDPVVF  203 (325)
Q Consensus       131 ~a~~~~~~~~~~~~pvv~~~~~G~~-~g~G~tHs~~---~~--a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-~~Pv~i  203 (325)
                       ....|+.. -..+..++ .++... +.+|.|| |+   ++  +-++. |++.|+.|+|.+|+..+++.|++. +.|.+|
T Consensus       502 -~~~~wr~~-~~sLn~l~-Ts~~~~qghNG~TH-Q~Pg~ie~l~~~r~-~~~rV~rPaDaNe~laa~~~al~s~~~p~~I  576 (785)
T PRK05261        502 -REIPWRKP-IPSLNYLL-TSHVWRQDHNGFSH-QDPGFIDHVANKKP-DVIRVYLPPDANTLLAVADHCLRSRNYINVI  576 (785)
T ss_pred             -hhcccCCC-CcceeEEe-ecceeecCCCCCCC-CCchHHHHHHhcCC-CcceEEeCCCHHHHHHHHHHHHHhCCCCEEE
Confidence             22234321 11222333 233433 4599999 65   44  55566 999999999999999999999986 579988


Q ss_pred             EeCccccCcccCccccccCCC---ccccCCceEEee--e-----CCcEEEEEechhHHH-HHHHHHHHHhc--CCcEEEE
Q 020510          204 LENELLYGESFPVSAEVLDSS---FCLPIGKAKIER--E-----GKDVTITAFSKIVGL-SLKAAEILAKE--GISAEVI  270 (325)
Q Consensus       204 r~~~~l~~~~~p~~~~~~~~~---~~~~~gk~~vl~--~-----G~dv~Iia~G~~~~~-a~~Aa~~L~~~--Gi~~~Vi  270 (325)
                      ..+|.    +.|   ...+.+   ..+..| +.++.  +     +.|++|+++|+.+.. |++|++.|+++  |++++||
T Consensus       577 vlsRQ----~lp---~~~~~~~a~~~~~kG-ayi~~~a~~~~~~~pDvvL~atGsev~leAlaAa~~L~~~~pgikvRVV  648 (785)
T PRK05261        577 VAGKQ----PRP---QWLSMDEARKHCTKG-LGIWDWASNDDGEEPDVVLACAGDVPTLETLAAADLLREHFPDLKIRVV  648 (785)
T ss_pred             EEeCC----CCc---ccCChHHHHHhccCc-eEEEEeccCCCCCCCCEEEEEeCcHhhHHHHHHHHHHHhhCCCCCEEEE
Confidence            87664    222   111111   123344 44444  2     359999999999998 99999999999  9999999


Q ss_pred             Eeeecc----------CCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcC
Q 020510          271 NLRSIR----------PLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFP  315 (325)
Q Consensus       271 ~~~~l~----------P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~  315 (325)
                      ++..+-          -++.+.+..+.-..+.||+.     .-|.-+.|-..+..
T Consensus       649 Sv~dLf~lQ~~~~~~~~lsd~~f~~lFt~d~pvif~-----~hgyp~~i~~l~~~  698 (785)
T PRK05261        649 NVVDLMKLQPPSEHPHGLSDREFDALFTTDKPVIFA-----FHGYPWLIHRLTYR  698 (785)
T ss_pred             EechhhhhCCcccCCCCCCHHHHHHhCCCCCcEEEE-----eCCCHHHHHHHhcc
Confidence            995321          12344555555444444433     23444555555543

>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed

Probab=99.84  E-value=1.2e-18  Score=168.16  Aligned_cols=257  Identities=17%  Similarity=0.135  Sum_probs=178.3

Q ss_pred             ccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHH---HhCCCceeechhhHHHHHHHHHHHhccCCeeEEe
Q 020510           37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLE---KYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVE  113 (325)
Q Consensus        37 ~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~---~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~  113 (325)
                      ++-.+|++.+...   .+.+++.--+ ...++..   .+.+.+   ++ ...|+.+ .+|.+++++|+|+|.+|.|.++.
T Consensus         6 ~~GNeAiA~ga~~---ag~~~~a~YP-ITPsTeI---~e~la~~~~~~-g~~~vq~-E~E~aA~~~a~GAs~aG~Ra~ta   76 (375)
T PRK09627          6 STGNELVAKAAIE---CGCRFFGGYP-ITPSSEI---AHEMSVLLPKC-GGTFIQM-EDEISGISVALGASMSGVKSMTA   76 (375)
T ss_pred             echHHHHHHHHHH---hCCCEEEEeC-CCChhHH---HHHHHHHHHHc-CCEEEEc-CCHHHHHHHHHHHHhhCCCEEee
Confidence            3446666665543   4677777555 2333333   233433   44 2456664 89999999999999999999999


Q ss_pred             cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC--CCCCCCCCCcchHHHHHHh-----cCCCcEEEeeCCHHH
Q 020510          114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN--GAAAGVGAQHSHCYAAWYA-----SVPGLKVLSPYSSED  186 (325)
Q Consensus       114 ~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~--G~~~g~G~tHs~~~~a~~~-----~iP~~~V~~P~d~~e  186 (325)
                      |+.+ .+....|++-...+         ..+|++++...  |++.|.-....|.|....+     ..|.+ |++|+|++|
T Consensus        77 TSg~-G~~lm~E~~~~a~~---------~e~P~V~~~~~R~GpstG~p~~~~q~D~~~~~~~~hgd~~~i-vl~p~~~qE  145 (375)
T PRK09627         77 SSGP-GISLKAEQIGLGFI---------AEIPLVIVNVMRGGPSTGLPTRVAQGDVNQAKNPTHGDFKSI-ALAPGSLEE  145 (375)
T ss_pred             cCCc-hHHHHhhHHHHHHh---------ccCCEEEEEeccCCCcCCCCCccchHHHHHHhcCCCCCcCcE-EEeCCCHHH
Confidence            9855 55667788865433         68999987654  6655543333455543223     45665 999999999


Q ss_pred             HHHHHHHhHh----CCCcEEEEeCccccCc--cc--Cccccc---------cC---C---Cccc----c-----------
Q 020510          187 ARGLLKAAIR----DPDPVVFLENELLYGE--SF--PVSAEV---------LD---S---SFCL----P-----------  228 (325)
Q Consensus       187 ~~~~l~~a~~----~~~Pv~ir~~~~l~~~--~~--p~~~~~---------~~---~---~~~~----~-----------  228 (325)
                      ++++...|++    .+.||+++.+..+-..  .+  |....+         +.   .   .|.+    +           
T Consensus       146 a~d~t~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~  225 (375)
T PRK09627        146 AYTETVRAFNLAERFMTPVFLLLDETVGHMYGKAVIPDLEEVQKMIINRKEFDGDKKDYKPYGVAQDEPAVLNPFFKGYR  225 (375)
T ss_pred             HHHHHHHHHHHHHHHcCceEEecchHHhCCeeeccCCChHhccccccccccccCCcccccCCccCCCCCcccCCCCCCce
Confidence            9999999987    4789999865422100  00  000000         00   0   0000    0           


Q ss_pred             --------------------------------------CCceEEee-eCCcEEEEEechhHHHHHHHHHHHHhcCCcEEE
Q 020510          229 --------------------------------------IGKAKIER-EGKDVTITAFSKIVGLSLKAAEILAKEGISAEV  269 (325)
Q Consensus       229 --------------------------------------~gk~~vl~-~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~V  269 (325)
                                                            +...+... ++.|++||++|+....+++|++.|+++|+++++
T Consensus       226 ~~~~~~~~~~~g~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~y~~~dAd~~IV~~GSt~~~~keAv~~lr~~G~kvg~  305 (375)
T PRK09627        226 YHVTGLHHGPIGFPTEDAKICGKLIDRLFNKIESHQDEIEEYEEYMLDDAEILIIAYGSVSLSAKEAIKRLREEGIKVGL  305 (375)
T ss_pred             EEecCccccccCCcCCCHHHHHHHHHHHHHHHHHHhhhcCCceeeCCCCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEE
Confidence                                                  00011111 246899999999999999999999999999999


Q ss_pred             EEeeeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcC
Q 020510          270 INLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFP  315 (325)
Q Consensus       270 i~~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~  315 (325)
                      +.+++++|||.+.|++.+++.++|+|+|++.  |.|+.+|.+.+..
T Consensus       306 l~~~~~~PfP~~~i~~~l~~~k~viVvE~n~--Gql~~~v~~~~~~  349 (375)
T PRK09627        306 FRPITLWPSPAKKLKEIGDKFEKILVIELNM--GQYLEEIERVMQR  349 (375)
T ss_pred             EEeCeEECCCHHHHHHHHhcCCEEEEEcCCh--HHHHHHHHHHhCC
Confidence            9999999999999999999999999999997  9999999988853

>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit

Probab=99.83  E-value=7.9e-19  Score=179.50  Aligned_cols=257  Identities=16%  Similarity=0.168  Sum_probs=173.4

Q ss_pred             ccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCC--CceeechhhHHHHHHHHHHHhccCCeeEEec
Q 020510           37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGP--ERVLDTPITEAGFTGIGVGAAYYGLKPVVEF  114 (325)
Q Consensus        37 ~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp--~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~  114 (325)
                      ++-.+|++.+...   .+.+++.--+ ...++.   +.+.+.+.. +  +-++....+|..++++|+|+|.+|.|.+++|
T Consensus         5 ~~GneA~A~g~~~---ag~~~~~~YP-iTP~t~---i~e~l~~~~-~~~~~~~~~~~~E~~a~~~~~GAs~aG~ra~t~t   76 (595)
T TIGR03336         5 LLGNEAIARGALE---AGVGVAAAYP-GTPSSE---ITDTLAKVA-KRAGVYFEWSVNEKVAVEVAAGAAWSGLRAFCTM   76 (595)
T ss_pred             ecHHHHHHHHHHH---cCCEEEEecC-CCCHHH---HHHHHHHhh-hhccEEEEECcCHHHHHHHHHHHHhcCcceEEEc
Confidence            4556777777764   4566665444 122222   224444433 3  3456677899999999999999999999999


Q ss_pred             ccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCc-chHHHHHHhcCCCcEEEeeCCHHHHHHHHHH
Q 020510          115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQH-SHCYAAWYASVPGLKVLSPYSSEDARGLLKA  193 (325)
Q Consensus       115 ~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tH-s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~  193 (325)
                      . +..+..+.|+|.+ ++++      ..+.|+|++..++++  .++++ .|.+.-+.+ ..++.|++|+|++|++++...
T Consensus        77 s-~~Gl~~~~e~l~~-~~~~------g~~~~iV~~~~~~~g--p~~~~~~q~d~~~~~-~~~~~vl~p~~~qE~~d~~~~  145 (595)
T TIGR03336        77 K-HVGLNVAADPLMT-LAYT------GVKGGLVVVVADDPS--MHSSQNEQDTRHYAK-FAKIPCLEPSTPQEAKDMVKY  145 (595)
T ss_pred             c-CCchhhhHHHhhh-hhhh------cCcCceEEEEccCCC--CccchhhHhHHHHHH-hcCCeEECCCCHHHHHHHHHH
Confidence            8 6678899999866 5543      247888888765432  23443 244332222 236669999999999999999


Q ss_pred             hHh----CCCcEEEEeCccccCc--c--c---Cccccc--cCCCc---cc-c--------------------CCc--eE-
Q 020510          194 AIR----DPDPVVFLENELLYGE--S--F---PVSAEV--LDSSF---CL-P--------------------IGK--AK-  233 (325)
Q Consensus       194 a~~----~~~Pv~ir~~~~l~~~--~--~---p~~~~~--~~~~~---~~-~--------------------~gk--~~-  233 (325)
                      |++    .+-||+++.+..+-..  .  .   +..+..  +..++   .. +                    ...  .+ 
T Consensus       146 Af~lae~~~~PV~v~~d~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (595)
T TIGR03336       146 AFELSEKFGLPVILRPTTRISHMRGDVELGEIPKEEVVKGFEKDPERYVMVPAIARVRHKKLLSKQHKLREELNESPLNR  225 (595)
T ss_pred             HHHHHHHHCCCEEEEEeeeeccceeeEecCCCcccccccCCCCChhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCce
Confidence            998    4789999866432110  0  0   000000  00000   00 0                    000  11 


Q ss_pred             EeeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHH
Q 020510          234 IEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAF  313 (325)
Q Consensus       234 vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l  313 (325)
                      +..++.|++||++|++++.+++|++.|   |++++|++++++||||++.|.++++++++|+|+|||.  +++++.+...+
T Consensus       226 ~~~~~~di~iv~~G~~~~~a~ea~~~~---Gi~~~v~~~~~i~Pld~~~i~~~~~~~~~vivvEe~~--~~~~~~~~~~~  300 (595)
T TIGR03336       226 LEINGAKIGVIASGIAYNYVKEALERL---GVDVSVLKIGFTYPVPEGLVEEFLSGVEEVLVVEELE--PVVEEQVKALA  300 (595)
T ss_pred             eccCCCCEEEEEcCHHHHHHHHHHHHc---CCCeEEEEeCCCCCCCHHHHHHHHhcCCeEEEEeCCc--cHHHHHHHHHH
Confidence            223468999999999999999987765   9999999999999999999999999999999999998  56666666665


Q ss_pred             cCCC
Q 020510          314 FPPA  317 (325)
Q Consensus       314 ~~~~  317 (325)
                      .+++
T Consensus       301 ~~~~  304 (595)
T TIGR03336       301 GTAG  304 (595)
T ss_pred             HhcC
Confidence            5443

Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.

>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed

Probab=99.83  E-value=2.7e-18  Score=167.76  Aligned_cols=256  Identities=18%  Similarity=0.200  Sum_probs=177.6

Q ss_pred             ccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCC-----ceeechhhHHHHHHHHHHHhccCCeeE
Q 020510           37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPE-----RVLDTPITEAGFTGIGVGAAYYGLKPV  111 (325)
Q Consensus        37 ~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~-----R~i~~GIaE~~~vg~A~GlA~~G~~p~  111 (325)
                      ++-.+|++.+...   .+.+++..-+ ...++..   .+.+.+.. ++     .|+. ..+|.++++++.|+|.+|.|.+
T Consensus        13 ~~GNeAiA~ga~~---Ag~~~~a~YP-ITPsTeI---~e~la~~~-~~g~~~~~~vq-~E~E~~A~~~~~GAs~aGaRa~   83 (407)
T PRK09622         13 WDGNTAASNALRQ---AQIDVVAAYP-ITPSTPI---VQNYGSFK-ANGYVDGEFVM-VESEHAAMSACVGAAAAGGRVA   83 (407)
T ss_pred             cchHHHHHHHHHH---hCCCEEEEEC-CCCccHH---HHHHHHHh-hCCCcCcEEEe-eccHHHHHHHHHHHHhhCcCEE
Confidence            4456677766543   4677777655 2333332   24455443 42     4677 4799999999999999999999


Q ss_pred             EecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC-CCCCCCCCCc-chHHHHHHhcCCCcEEEeeCCHHHHHH
Q 020510          112 VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGVGAQH-SHCYAAWYASVPGLKVLSPYSSEDARG  189 (325)
Q Consensus       112 v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~~g~G~tH-s~~~~a~~~~iP~~~V~~P~d~~e~~~  189 (325)
                      +.|. +..+..+.|.|... +.        ..+|+|+.... |..++ -+++ .|.|. +...-.++.+++|+|++|+++
T Consensus        84 TaTS-~~Gl~lm~E~l~~a-a~--------~~~P~V~~~~~R~~~~~-~~i~~d~~D~-~~~r~~g~ivl~p~s~QEa~d  151 (407)
T PRK09622         84 TATS-SQGLALMVEVLYQA-SG--------MRLPIVLNLVNRALAAP-LNVNGDHSDM-YLSRDSGWISLCTCNPQEAYD  151 (407)
T ss_pred             eecC-cchHHHHhhHHHHH-HH--------hhCCEEEEEeccccCCC-cCCCchHHHH-HHHhcCCeEEEeCCCHHHHHH
Confidence            9998 55778889998663 43        58998887653 32222 2333 23332 223456799999999999999


Q ss_pred             HHHHhHhC------CCcEEEEeCccccC---ccc--------------------------Ccc-ccccCCCccc------
Q 020510          190 LLKAAIRD------PDPVVFLENELLYG---ESF--------------------------PVS-AEVLDSSFCL------  227 (325)
Q Consensus       190 ~l~~a~~~------~~Pv~ir~~~~l~~---~~~--------------------------p~~-~~~~~~~~~~------  227 (325)
                      +...|++.      ..||+++.+..+..   ..+                          |.. +.....+..+      
T Consensus       152 ~~~~Af~lAE~~~~~~Pviv~~Dg~~~sh~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  231 (407)
T PRK09622        152 FTLMAFKIAEDQKVRLPVIVNQDGFLCSHTAQNVRPLSDEVAYQFVGEYQTKNSMLDFDKPVTYGAQTEEDWHFEHKAQL  231 (407)
T ss_pred             HHHHHHHHHHHhccCCCEEEEechhhhhCceeeecCCCHHHHhhccCcccccccccCCCCCccCCCCCCCCeeEEechhc
Confidence            99999873      57999986643200   000                          000 0000000000      


Q ss_pred             ----------------c----CCc----eEEe-eeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHH
Q 020510          228 ----------------P----IGK----AKIE-REGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRST  282 (325)
Q Consensus       228 ----------------~----~gk----~~vl-~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~  282 (325)
                                      +    .|.    .+.. .++.|++||++|+++..+++|++.|+++|++++|+++++++|||.+.
T Consensus       232 ~~~~~~~~~~i~~~~~~~~k~~g~~y~~~e~~~~edad~~iV~~Gs~~~~a~ea~~~L~~~G~kvgvi~~r~~~Pfp~~~  311 (407)
T PRK09622        232 HHALMSSSSVIEEVFNDFAKLTGRKYNLVETYQLEDAEVAIVALGTTYESAIVAAKEMRKEGIKAGVATIRVLRPFPYER  311 (407)
T ss_pred             chhhhhhHHHHHHHHHHHHHHhCCCCCceeecCCCCCCEEEEEEChhHHHHHHHHHHHHhCCCCeEEEEeeEhhhCCHHH
Confidence                            0    110    1111 13578999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCeEEEEecCCCCCCHHHHHHHHH
Q 020510          283 INASVRKTNRLVTVEEGFPQHGVGAEIWCAF  313 (325)
Q Consensus       283 l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l  313 (325)
                      |.++++++++|+|+|++...||+|+.+.+.+
T Consensus       312 l~~~l~~~k~VvVvE~~~~~Gg~G~l~~ev~  342 (407)
T PRK09622        312 LGQALKNLKALAILDRSSPAGAMGALFNEVT  342 (407)
T ss_pred             HHHHHhcCCEEEEEeCCCCCCCccHHHHHHH
Confidence            9999999999999999999999988555544

>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2

Probab=99.81  E-value=5.1e-21  Score=157.32  Aligned_cols=90  Identities=42%  Similarity=0.633  Sum_probs=86.5

Q ss_pred             CceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHH
Q 020510          230 GKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI  309 (325)
Q Consensus       230 gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v  309 (325)
                      ||++++++|+|++||++|++++.|++|++.|+++|++++|||+++++|||++.|.++++++++++|+|||+..||+|+.|
T Consensus         1 Gk~~~~~~g~di~iia~G~~~~~al~A~~~L~~~Gi~~~vi~~~~i~P~d~~~l~~~~~~~~~vvvvee~~~~gg~g~~i   80 (124)
T PF02780_consen    1 GKAEVLREGADITIIAYGSMVEEALEAAEELEEEGIKAGVIDLRTIKPFDEEALLESLKKTGRVVVVEEHYKIGGLGSAI   80 (124)
T ss_dssp             TEEEEEESSSSEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEEEESSBHHHHHHHSHHHHHHHHSETCESEEEEHSSH
T ss_pred             CEEEEEeCCCCEEEEeehHHHHHHHHHHHHHHHcCCceeEEeeEEEecccccchHHHHHHhccccccccccccccHHHHH
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCcc
Q 020510          310 WCAFFPPAWL  319 (325)
Q Consensus       310 ~~~l~~~~~~  319 (325)
                      ++.+.++++.
T Consensus        81 ~~~l~~~~~~   90 (124)
T PF02780_consen   81 AEYLAENGFN   90 (124)
T ss_dssp             HHHHHHHTTT
T ss_pred             HHHHHHhCCc
Confidence            9999987664

2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....

>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type

Probab=99.80  E-value=1.6e-18  Score=178.63  Aligned_cols=260  Identities=18%  Similarity=0.255  Sum_probs=184.2

Q ss_pred             hHHhhhhcCCCCccccccccc----cccccC-----cccccccHHHHHHHHHHHHHhc---CCcEEEEecCCCCccCccc
Q 020510            5 IRQKVAAGGGSPVARIRPVVS----NLRNYS-----SAVKQMMVREALNSALDEEMSA---DPKVFLMGEEVGEYQGAYK   72 (325)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~-----~~~~~~s~~~a~~~~L~~l~~~---d~~iv~l~~D~~~~~g~~~   72 (325)
                      .+...++.||-..+|..+...    .+..|.     ...+.+|++.||++.|..+++.   .++||.+.+|.+++   |+
T Consensus       448 ~~~rr~~Lgg~~p~R~~~~~~l~vP~l~~~~~~~~~~~~~~~STt~afvr~l~~L~r~~~~g~riVpi~pDeart---fg  524 (885)
T TIGR00759       448 LLARRQALGGYLPARRTFAEHLTVPALEFFGALLKGSGEREVSTTMAFVRILNKLLKDKEIGKRIVPIVPDEART---FG  524 (885)
T ss_pred             HHHHHHHhCCCCCCcCCCCCCCCCCCchhhHHHhcCCCCCCccHHHHHHHHHHHHhcCcccccceeecCCCcccc---CC
Confidence            455677788876666553111    222221     2237899999999999999986   47799999999864   55


Q ss_pred             cchhHHHHhC------------------------CCceeechhhHHHHHH--HHHHHhcc--C--CeeEEecccccH-HH
Q 020510           73 ISKGLLEKYG------------------------PERVLDTPITEAGFTG--IGVGAAYY--G--LKPVVEFMTFNF-SM  121 (325)
Q Consensus        73 ~~~~~~~~~g------------------------p~R~i~~GIaE~~~vg--~A~GlA~~--G--~~p~v~~~~~~f-~~  121 (325)
                      + +++..+.|                        ..|+++.||+|.++++  +|+|.|.+  |  +.||+..| +.| .+
T Consensus       525 m-~g~f~~~gIy~~~gq~y~p~d~~~~~~y~e~~~Gq~le~GI~E~g~~~~~~aagtsys~~g~~miP~yi~Y-smFgfq  602 (885)
T TIGR00759       525 M-EGLFRQIGIYSPHGQTYTPVDADSLLAYKESKDGQILQEGINEAGAMASWIAAATSYATHGEPMIPFYIYY-SMFGFQ  602 (885)
T ss_pred             h-HHhhcccCccCCCCccCCccchhhhhhcccCCCCcchhhhhhhHHHHHHHHHHHhHHhhCCCeeeeeeEee-cccccc
Confidence            4 56666543                        4799999999999998  45666544  5  78998555 656 99


Q ss_pred             HHHHHHHHHHhhccccCCCCccCCEEEEeCCCCC--CCCCCCcchHHH--HHHhcCCCcEEEeeCCHHHHHHHHHHhHhC
Q 020510          122 QAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGAQHSHCYA--AWYASVPGLKVLSPYSSEDARGLLKAAIRD  197 (325)
Q Consensus       122 ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~G~tHs~~~~--a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~  197 (325)
                      |..|.+ ..+|++       .-..+++.++.|.+  .|.|.+| |...  .+...+||+..|.|+...|+..+++++++.
T Consensus       603 R~gD~~-waa~d~-------~argfl~g~taGrtTL~gEGlqH-qdg~s~~~~~~~P~~~~ydPafa~Ela~i~~~g~~r  673 (885)
T TIGR00759       603 RIGDLC-WAAADQ-------RARGFLLGATAGRTTLNGEGLQH-EDGHSLLQAATIPNCIAYDPAFAYEVAVIMEDGLRR  673 (885)
T ss_pred             chHHHH-HHHhhh-------cCCceEeccCCCcccCCCccccC-ccccchHHHhcCCCceeecCchHHHHHHHHHHHHHH
Confidence            999976 445642       34455555555763  5788899 5554  567889999999999999999999988873


Q ss_pred             ----CCcEEEEeCccccCcccCccccccCCC-ccccCCceEEeee------CCcEEEEEechhHHHHHHHHHHHHhc-CC
Q 020510          198 ----PDPVVFLENELLYGESFPVSAEVLDSS-FCLPIGKAKIERE------GKDVTITAFSKIVGLSLKAAEILAKE-GI  265 (325)
Q Consensus       198 ----~~Pv~ir~~~~l~~~~~p~~~~~~~~~-~~~~~gk~~vl~~------G~dv~Iia~G~~~~~a~~Aa~~L~~~-Gi  265 (325)
                          +..+|++.+.  +.++++. +..++.. ..+ +-+.+++++      +.++.|+++|+.+.++++|++.|+++ |+
T Consensus       674 m~~~~~~v~yylt~--~ne~~~q-p~~p~~~~egI-lkG~Y~l~~~~~~~~~~~VqLlgSG~il~evl~Aa~lL~~~~gV  749 (885)
T TIGR00759       674 MYGEQEDVFYYVTV--MNENYVQ-PPMPEGAEEGI-LKGLYRFETSTEEKAKGHVQLLGSGAIMRAVIEAAQLLAADWGV  749 (885)
T ss_pred             HhhCCCCEEEEEEe--cCCCCCC-CCCCcchHHhH-HhCceecccCCCCCCCccEEEEeccHHHHHHHHHHHHHHHHHCC
Confidence                5678887653  2222221 1112110 111 122444443      24799999999999999999999987 99


Q ss_pred             cEEEEEeeeccCCCHHH
Q 020510          266 SAEVINLRSIRPLDRST  282 (325)
Q Consensus       266 ~~~Vi~~~~l~P~d~~~  282 (325)
                      .++|++++|.+-|..+.
T Consensus       750 ~adVwSvTS~~eL~Rd~  766 (885)
T TIGR00759       750 ASDVWSVTSFTELARDG  766 (885)
T ss_pred             CCcEEECCCHHHHHHhH
Confidence            99999999998888774

WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.

>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed

Probab=99.78  E-value=2.3e-16  Score=152.96  Aligned_cols=258  Identities=14%  Similarity=0.124  Sum_probs=174.0

Q ss_pred             ccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCC----CceeechhhHHHHHHHHHHHhccCCeeEE
Q 020510           37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGP----ERVLDTPITEAGFTGIGVGAAYYGLKPVV  112 (325)
Q Consensus        37 ~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp----~R~i~~GIaE~~~vg~A~GlA~~G~~p~v  112 (325)
                      ++-.+|++.+..   ..+.+++..-+ ...++..   .+.+.+.. +    +-.+-...+|.+++++|.|+|.+|.|.++
T Consensus         6 l~GNeAiA~ga~---~ag~~~~a~YP-ITPsTei---~e~la~~~-~~G~~~~~~~~~E~E~aA~~~aiGAs~aGaRa~T   77 (390)
T PRK08366          6 VSGNYAAAYAAL---HARVQVVAAYP-ITPQTSI---IEKIAEFI-ANGEADIQYVPVESEHSAMAACIGASAAGARAFT   77 (390)
T ss_pred             eeHHHHHHHHHH---HhCCCEEEEEC-CCChhHH---HHHHHHHh-hCCCCCeEEEEeCCHHHHHHHHHHHHhhCCCeEe
Confidence            345566665543   34677776554 2233332   23444433 3    12233357999999999999999999999


Q ss_pred             ecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC--CCCCCCCCCc-chHHHHHHhcCCCcEEEeeCCHHHHHH
Q 020510          113 EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN--GAAAGVGAQH-SHCYAAWYASVPGLKVLSPYSSEDARG  189 (325)
Q Consensus       113 ~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~--G~~~g~G~tH-s~~~~a~~~~iP~~~V~~P~d~~e~~~  189 (325)
                      .|. +..+..+.|+|.. ++.        ..+|+|+....  |+ + ..++| .|.|.- +..-.++.+++|+|++|+++
T Consensus        78 aTS-g~Gl~lm~E~l~~-aa~--------~~lPiVi~~~~R~~p-~-~~~~~~~q~D~~-~~~d~g~i~~~~~~~QEa~d  144 (390)
T PRK08366         78 ATS-AQGLALMHEMLHW-AAG--------ARLPIVMVDVNRAMA-P-PWSVWDDQTDSL-AQRDTGWMQFYAENNQEVYD  144 (390)
T ss_pred             eeC-cccHHHHhhHHHH-HHh--------cCCCEEEEEeccCCC-C-CCCCcchhhHHH-HHhhcCEEEEeCCCHHHHHH
Confidence            998 5577888999865 443        58999887643  33 2 23443 344432 22333789999999999999


Q ss_pred             HHHHhHh----CCCcEEEEeCccccC----------c---------ccC---c---c-c---cccC-CCc------c---
Q 020510          190 LLKAAIR----DPDPVVFLENELLYG----------E---------SFP---V---S-A---EVLD-SSF------C---  226 (325)
Q Consensus       190 ~l~~a~~----~~~Pv~ir~~~~l~~----------~---------~~p---~---~-~---~~~~-~~~------~---  226 (325)
                      +...|++    .+.||+++.+..+..          +         ..+   .   . +   ..+. .+.      .   
T Consensus       145 ~t~~Af~lAE~~~~PViv~~Dg~~~sh~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~p~s~~~~~~~~~~~e~~~~~~~  224 (390)
T PRK08366        145 GVLMAFKVAETVNLPAMVVESAFILSHTYDVVEMIPQELVDEFLPPRKPLYSLADFDNPISVGALATPADYYEFRYKIAK  224 (390)
T ss_pred             HHHHHHHHHHHHCCCEEEEecCcccccccccccCCCHHHHhhhcCccccccccCCCCCCcccccCCCCcceeeeeHhhhH
Confidence            9998887    478999987532100          0         000   0   0 0   0000 000      0   


Q ss_pred             ---------------c--cCCce-E-Eee----eCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHH
Q 020510          227 ---------------L--PIGKA-K-IER----EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTI  283 (325)
Q Consensus       227 ---------------~--~~gk~-~-vl~----~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l  283 (325)
                                     +  .+|+- . ...    ++.|++||++|+....+++|++.|+++|++++++.+++++|||.+.|
T Consensus       225 ~~e~~~~~i~~~~~~~~k~~gr~~~~~~e~y~~edAe~~iV~~Gs~~~~~~eav~~lr~~G~kvg~l~i~~~~PfP~~~i  304 (390)
T PRK08366        225 AMEEAKKVIKEVGKEFGERFGRDYSQMIETYYTDDADFVFMGMGSLMGTVKEAVDLLRKEGYKVGYAKVRWFRPFPKEEL  304 (390)
T ss_pred             HHHhHHHHHHHHHHHHHHHhCccccccceecCCCCCCEEEEEeCccHHHHHHHHHHHHhcCCceeeEEEeeecCCCHHHH
Confidence                           0  01111 1 111    34789999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCeEEEEecCCCCCC---HHHHHHHHHcC
Q 020510          284 NASVRKTNRLVTVEEGFPQHG---VGAEIWCAFFP  315 (325)
Q Consensus       284 ~~~~~~~~~vvvvEe~~~~GG---lg~~v~~~l~~  315 (325)
                      ++++++.++|+|+|++...|.   +..++...|.+
T Consensus       305 ~~~l~~~k~ViVvE~n~~~Gq~g~l~~ev~~~l~~  339 (390)
T PRK08366        305 YEIAESVKGIAVLDRNFSFGQEGILFTEAKGALYN  339 (390)
T ss_pred             HHHHhcCCEEEEEeCCCCCCcccHHHHHHHHHHhc
Confidence            999999999999999986577   56666666643

>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit

Probab=99.78  E-value=8.2e-17  Score=163.36  Aligned_cols=262  Identities=18%  Similarity=0.202  Sum_probs=176.4

Q ss_pred             cccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEecc
Q 020510           36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM  115 (325)
Q Consensus        36 ~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~  115 (325)
                      -++-.+|++.+...   .+.+++..-+ ...++...-...++.+++  +-.+....+|.+++++|.|+|.+|.|.++.|.
T Consensus       195 ~l~GNeAvA~ga~~---ag~~~~~~YP-iTPsTei~e~la~~~~~~--~~~~~q~E~E~aA~~~a~GAs~aG~Ra~taTS  268 (562)
T TIGR03710       195 LISGNEAIALGAIA---AGLRFYAAYP-ITPASDILEFLAKHLKKF--GVVVVQAEDEIAAINMAIGASYAGARAMTATS  268 (562)
T ss_pred             EeehHHHHHHHHHH---hCCceecccC-CCChhHHHHHHHHhhhhh--CcEEEeeccHHHHHHHHHhHHhcCCceeecCC
Confidence            45567777776543   3555555443 222333321112233344  23444569999999999999999999999998


Q ss_pred             cccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC--CCCCCCCCCcchHHH--HHHhc--CCCcEEEeeCCHHHHHH
Q 020510          116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN--GAAAGVGAQHSHCYA--AWYAS--VPGLKVLSPYSSEDARG  189 (325)
Q Consensus       116 ~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~--G~~~g~G~tHs~~~~--a~~~~--iP~~~V~~P~d~~e~~~  189 (325)
                       +..+..+.|.+-. ++ +       ..+|+|++..+  |+..|.-..+.|.|.  +.+..  --++.|++|+|++|+++
T Consensus       269 -g~Gl~lm~E~l~~-a~-~-------~~~P~Vi~~~~R~gpstg~~t~~eq~D~~~~~~~~hgd~~~ivl~p~~~qEa~d  338 (562)
T TIGR03710       269 -GPGFALMTEALGL-AG-M-------TETPLVIVDVQRGGPSTGLPTKTEQSDLLFALYGGHGEFPRIVLAPGSPEECFY  338 (562)
T ss_pred             -CCChhHhHHHHhH-HH-h-------ccCCEEEEEcccCCCCCCCCCCccHHHHHHHhcCCCCCcCceEEcCCCHHHHHH
Confidence             4566778898833 33 2       68999988754  454454334445553  33322  22478999999999999


Q ss_pred             HHHHhHh----CCCcEEEEeCccccCc--c--cCc------------------------c-----c-cccCCC-ccc---
Q 020510          190 LLKAAIR----DPDPVVFLENELLYGE--S--FPV------------------------S-----A-EVLDSS-FCL---  227 (325)
Q Consensus       190 ~l~~a~~----~~~Pv~ir~~~~l~~~--~--~p~------------------------~-----~-~~~~~~-~~~---  227 (325)
                      +...|++    ...||+++.+..+-..  .  .|.                        .     + .++... ..+   
T Consensus       339 ~~~~Af~lAe~~~~PViv~~D~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~~~~  418 (562)
T TIGR03710       339 LAIEAFNLAEKYQTPVIVLSDQYLANSYETVPPPDLDDLPIIDRGKVLEPEEEYKRYELTEDGISPRAIPGTPGGIHRAT  418 (562)
T ss_pred             HHHHHHHHHHHhcCCEEEEechHHhCCceeccCCChhhcccccccccccCCCCCCCCCcCCCCCCCCCcCCCCCceEEec
Confidence            9999887    4789999865322100  0  000                        0     0 000000 000   


Q ss_pred             -----c----------------------------CCceEEee-eCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEee
Q 020510          228 -----P----------------------------IGKAKIER-EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLR  273 (325)
Q Consensus       228 -----~----------------------------~gk~~vl~-~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~  273 (325)
                           +                            ++..+... ++.|++||++|++...+++|++.|+++|++++++.++
T Consensus       419 ~~~~~e~g~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~da~~~iv~~Gs~~~~~~eav~~lr~~G~kvg~l~~~  498 (562)
T TIGR03710       419 GDEHDETGHISEDPENRVKMMEKRARKLETIAKEIPEPEVYGDEDADVLVIGWGSTYGAIREAVERLRAEGIKVALLHLR  498 (562)
T ss_pred             CCccCCCCCcCCCHHHHHHHHHHHHHHHHHHHhhCCCceeecCCCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEeC
Confidence                 0                            00011111 2468999999999999999999999999999999999


Q ss_pred             eccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHc
Q 020510          274 SIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFF  314 (325)
Q Consensus       274 ~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~  314 (325)
                      +++|||.+.|.+.+++.++|+|+|++. .|.|..+|...+.
T Consensus       499 ~~~PfP~~~i~~~l~~~k~v~VvE~n~-~Gql~~~v~~~~~  538 (562)
T TIGR03710       499 LLYPFPKDELAELLEGAKKVIVVEQNA-TGQLAKLLRAETG  538 (562)
T ss_pred             eecCCCHHHHHHHHhcCCEEEEEccCh-hhhHHHHHHHHhC
Confidence            999999999999999999999999986 4999999998873

The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.

>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed

Probab=99.76  E-value=4.9e-16  Score=151.00  Aligned_cols=259  Identities=17%  Similarity=0.156  Sum_probs=176.8

Q ss_pred             ccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCC-----CceeechhhHHHHHHHHHHHhccCCeeE
Q 020510           37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGP-----ERVLDTPITEAGFTGIGVGAAYYGLKPV  111 (325)
Q Consensus        37 ~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp-----~R~i~~GIaE~~~vg~A~GlA~~G~~p~  111 (325)
                      ++-.+|++.+...   .+.+++..-+ ...++..   .+.+.+.. +     ..|+. ..+|.+++++|.|+|.+|.|.+
T Consensus         7 ~~GNeAvA~aa~~---Ag~~v~a~YP-ITPsTei---~e~la~~~-~~g~~~~~~v~-~EsE~aA~~~~~GAs~aGaRa~   77 (394)
T PRK08367          7 MKANEAAAWAAKL---AKPKVIAAFP-ITPSTLV---PEKISEFV-ANGELDAEFIK-VESEHSAISACVGASAAGVRTF   77 (394)
T ss_pred             ccHHHHHHHHHHH---hCCCEEEEEC-CCCccHH---HHHHHHHh-hcCCcCeEEEE-eCCHHHHHHHHHHHHhhCCCeE
Confidence            4456677666543   4677776554 2233332   24444432 2     33554 4899999999999999999999


Q ss_pred             EecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC-CCCCCCCCCcchHHHHHHhcCCCcEEEeeCCHHHHHHH
Q 020510          112 VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGL  190 (325)
Q Consensus       112 v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~~g~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~  190 (325)
                      +.|. +..+..+.|++.. ++.        ..+|++++... +...+.+....|.| .+.-.--++.+++|+|.+|+.++
T Consensus        78 TaTS-~~Gl~lm~E~l~~-aag--------~~lP~V~vv~~R~~~~p~~i~~d~~D-~~~~rd~g~~~~~a~~~QEa~D~  146 (394)
T PRK08367         78 TATA-SQGLALMHEVLFI-AAG--------MRLPIVMAIGNRALSAPINIWNDWQD-TISQRDTGWMQFYAENNQEALDL  146 (394)
T ss_pred             eeec-cchHHHHhhHHHH-HHH--------ccCCEEEEECCCCCCCCCCcCcchHH-HHhccccCeEEEeCCCHHHHHHH
Confidence            9998 6678889999865 443        58998888643 22222233223444 22223346888999999999999


Q ss_pred             HHHhHhC------CCcEEEEeCccccCc--------------c-cC-cc----------cc----c-cCCCc-----c--
Q 020510          191 LKAAIRD------PDPVVFLENELLYGE--------------S-FP-VS----------AE----V-LDSSF-----C--  226 (325)
Q Consensus       191 l~~a~~~------~~Pv~ir~~~~l~~~--------------~-~p-~~----------~~----~-~~~~~-----~--  226 (325)
                      ...|++.      ..||+++.+..+...              . .| ..          +.    . ....+     .  
T Consensus       147 ~~~Af~lAE~~~~~~Pviv~~Dgf~~sH~~e~v~~~~~~~~~~~~~~~~~~~~~~d~~~p~~~g~~~~p~~~~~~~~~~~  226 (394)
T PRK08367        147 ILIAFKVAEDERVLLPAMVGFDAFILTHTVEPVEIPDQEVVDEFLGEYEPKHAYLDPARPITQGALAFPAHYMEARYTVW  226 (394)
T ss_pred             HHHHHHHHHHhCcCCCEEEEechhhhcCcccccccCCHHHHhhhcCcccccccccCCCCCcccCCCCCCCceEEEEeecH
Confidence            9998873      269999866421000              0 00 00          00    0 00000     0  


Q ss_pred             ---------c---------cCC-ceEEee----eCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHH
Q 020510          227 ---------L---------PIG-KAKIER----EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTI  283 (325)
Q Consensus       227 ---------~---------~~g-k~~vl~----~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l  283 (325)
                               +         .+| +...+.    ++.|++||++|+....+++|++.|+++|++++++.+++++|||.+.|
T Consensus       227 ~~~~~~~~~i~e~~~e~~~~~grky~~~e~yg~eDAe~viV~~GS~~~~~keav~~LR~~G~kVGllri~~~rPFP~~~i  306 (394)
T PRK08367        227 EAMENAKKVIDEAFAEFEKKFGRKYQKIEEYRTEDAEIIFVTMGSLAGTLKEFVDKLREEGYKVGAAKLTVYRPFPVEEI  306 (394)
T ss_pred             HHHHHhHHHHHHHHHHHHHHhCCccceeEEeCCCCCCEEEEEeCccHHHHHHHHHHHHhcCCcceeEEEeEecCCCHHHH
Confidence                     0         022 122221    35799999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCeEEEEecCCC---CCCHHHHHHHHHcC
Q 020510          284 NASVRKTNRLVTVEEGFP---QHGVGAEIWCAFFP  315 (325)
Q Consensus       284 ~~~~~~~~~vvvvEe~~~---~GGlg~~v~~~l~~  315 (325)
                      .+++++.++|+|+|.+..   .|.|..+|...|..
T Consensus       307 ~~~l~~~k~ViVvE~n~s~g~~g~l~~dV~aal~~  341 (394)
T PRK08367        307 RALAKKAKVLAFLEKNISFGLGGAVFADASAALVN  341 (394)
T ss_pred             HHHHccCCEEEEEeCCCCCCCCCcHHHHHHHHHhc
Confidence            999999999999999864   46688999999853

>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]

Probab=99.65  E-value=4.7e-15  Score=147.71  Aligned_cols=256  Identities=20%  Similarity=0.268  Sum_probs=175.6

Q ss_pred             hHHhhhhcCCCCcccccccc-cccccc---------CcccccccHHHHHHHHHHHHHhc---CCcEEEEecCCCCccCcc
Q 020510            5 IRQKVAAGGGSPVARIRPVV-SNLRNY---------SSAVKQMMVREALNSALDEEMSA---DPKVFLMGEEVGEYQGAY   71 (325)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~-~~~~~~---------~~~~~~~s~~~a~~~~L~~l~~~---d~~iv~l~~D~~~~~g~~   71 (325)
                      ++...++.||--.+| ||+. -.++++         ...++.+|++.||.+.|.+++++   .++||.+.+|.++   +|
T Consensus       451 l~~rr~al~g~~p~r-r~~~t~~l~vP~l~~~~a~~~~~g~~iSTtmAfvr~l~~llkdk~ig~riVpiipDear---Tf  526 (887)
T COG2609         451 LHARRAALGGYLPAR-RPKFTPALPVPSLSDFQALLKGQGEEISTTMAFVRILNELLKDKEIGKRIVPIIPDEAR---TF  526 (887)
T ss_pred             HHHHHHhcCCCCchh-cccCCCCccCCcHHHHHHHHhccCccchhHHHHHHHHHHHHhccccCCccccccCchhh---hc
Confidence            455666777754443 3333 112222         22345799999999999999985   3779999999986   45


Q ss_pred             ccchhHHHHhC------------------------CCceeechhhHHHHHH--HHHHHhcc--C--CeeEEecccccH-H
Q 020510           72 KISKGLLEKYG------------------------PERVLDTPITEAGFTG--IGVGAAYY--G--LKPVVEFMTFNF-S  120 (325)
Q Consensus        72 ~~~~~~~~~~g------------------------p~R~i~~GIaE~~~vg--~A~GlA~~--G--~~p~v~~~~~~f-~  120 (325)
                      ++ +++..+.|                        ..+.++.||+|.++++  +|+|.|..  |  +.||+-. |+.| .
T Consensus       527 gm-eg~f~q~GIy~~~GQ~y~p~d~~~~~~ykea~~GQiLqeGInE~ga~~sw~AagtSys~~~~pmiPfyi~-YsmFgf  604 (887)
T COG2609         527 GM-EGLFRQIGIYNPNGQQYTPQDRDQVMYYKEAESGQILQEGINEAGAFASWIAAGTSYSTHGEPMIPFYIY-YSMFGF  604 (887)
T ss_pred             cc-hhhhhhcccccCCCccCCccchhhhhhhhhCCCcchHHhhhccccHHHHHHHHhcccccCCccceeeeee-echhhh
Confidence            54 56655544                        4789999999999998  45666544  5  7898854 4655 9


Q ss_pred             HHHHHHHHHHHhhccccCCCCccCCEEEEeCCC-CC-CCCCCCcchHHH--HHHhcCCCcEEEeeCCHHHHHHHHHHhHh
Q 020510          121 MQAIDHIINSAAKSNYMSSGQISVPIVFRGPNG-AA-AGVGAQHSHCYA--AWYASVPGLKVLSPYSSEDARGLLKAAIR  196 (325)
Q Consensus       121 ~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G-~~-~g~G~tHs~~~~--a~~~~iP~~~V~~P~d~~e~~~~l~~a~~  196 (325)
                      +|..|-+ +.+|.       ++.-.+++.+.-| .+ .|.|.+| +...  -+-..+||+.-|.|+...|+.-+++.+++
T Consensus       605 qRigD~~-waA~d-------q~ARgFLlgaTagrtTLngEGlqH-edghS~l~~~~ip~~~tYdPafayEvAVI~~~g~~  675 (887)
T COG2609         605 QRIGDLL-WAAGD-------QDARGFLLGATAGRTTLNGEGLQH-EDGHSHLQAMTIPNCISYDPAFAYEVAVIMQDGLR  675 (887)
T ss_pred             hhHHHHH-HHHHh-------hhhcceeEeecCCCceeCcccccc-ccccchhhhhcCCCccccCchHHHHHHHHHHHHHH
Confidence            9999965 55665       3455577766544 33 5788888 5444  34467999999999999999999999987


Q ss_pred             C-------CCcEEEEeCccccCcccCccccccCC-CccccCCceEEeee-----CCcEEEEEechhHHHHHHHHHHHHhc
Q 020510          197 D-------PDPVVFLENELLYGESFPVSAEVLDS-SFCLPIGKAKIERE-----GKDVTITAFSKIVGLSLKAAEILAKE  263 (325)
Q Consensus       197 ~-------~~Pv~ir~~~~l~~~~~p~~~~~~~~-~~~~~~gk~~vl~~-----G~dv~Iia~G~~~~~a~~Aa~~L~~~  263 (325)
                      .       +.-.|++....    +++. |..|.+ +..+.- +.++++.     +.++.|+++|..+.+|++|++.|+++
T Consensus       676 rmy~~~qe~v~yYlt~~ne----~~~q-Pamp~gae~gI~k-G~Y~l~~~~~~~~~~vqll~SGai~~ea~~AaelL~~d  749 (887)
T COG2609         676 RMYGEGQENVFYYITLSNE----NYPQ-PAMPEGAEEGIIK-GIYKLETPGGQGKAKVQLLGSGAILREALEAAELLAKD  749 (887)
T ss_pred             HHhccCcCCcEEEEEeccC----cCCC-CCCCCcchhhhhh-ceeEeecCCCCCCceEEEEecchhHHHHHHHHHHHhhc
Confidence            2       12355553222    2221 112211 111212 2344432     46899999999999999999999984


Q ss_pred             -CCcEEEEEeeeccCCCHH
Q 020510          264 -GISAEVINLRSIRPLDRS  281 (325)
Q Consensus       264 -Gi~~~Vi~~~~l~P~d~~  281 (325)
                       |+.++|++++|..-+..+
T Consensus       750 ~gv~adl~svtS~~eL~rd  768 (887)
T COG2609         750 YGVEADLWSVTSFDELARD  768 (887)
T ss_pred             cccccCeeecccHHHHhcc
Confidence             999999999998777654

>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]

Probab=99.58  E-value=3.1e-13  Score=134.54  Aligned_cols=217  Identities=18%  Similarity=0.231  Sum_probs=154.7

Q ss_pred             CceeechhhHHHHHHHHHHHhccCCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCcc
Q 020510           84 ERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHS  163 (325)
Q Consensus        84 ~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tHs  163 (325)
                      +-+++.+.+|.-++.+|+|.+..|.|.++++. ...++++.|.+++ ++|.      ..+-.++++..+.++    ...|
T Consensus        58 ~vy~e~s~NEkvA~e~a~GA~~~G~ral~~mK-hVGlNvAsDpl~s-~ay~------Gv~GGlviv~aDDpg----~~SS  125 (640)
T COG4231          58 DVYFEWSLNEKVALETAAGASYAGVRALVTMK-HVGLNVASDPLMS-LAYA------GVTGGLVIVVADDPG----MHSS  125 (640)
T ss_pred             cEEEEecccHHHHHHHHHHhhhcCceeeEEec-ccccccchhhhhh-hhhc------CccccEEEEEccCCC----cccc
Confidence            78999999999999999999999999999988 7789999999976 5654      244556666544332    1222


Q ss_pred             hHH--HHHHhcCCCcEEEeeCCHHHHHHHHHHhHhC----CCcEEEEeCccccC-c--------ccC-cccc--ccC---
Q 020510          164 HCY--AAWYASVPGLKVLSPYSSEDARGLLKAAIRD----PDPVVFLENELLYG-E--------SFP-VSAE--VLD---  222 (325)
Q Consensus       164 ~~~--~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~----~~Pv~ir~~~~l~~-~--------~~p-~~~~--~~~---  222 (325)
                      |+-  -.++.....+-|+.|+|++|++++++++++.    +.||++|.+...-. +        +.+ ..+.  .+.   
T Consensus       126 qneqdsr~y~~~a~iPvLeP~d~Qea~d~~~~afelSe~~~~pVilr~ttr~~h~~~~V~~~~~~~~~~~~~~~~~~k~~  205 (640)
T COG4231         126 QNEQDSRAYGKFALIPVLEPSDPQEAYDYVKYAFELSEKSGLPVILRTTTRVSHSRGDVEVGLNRRPIVEPEDEFFIKDP  205 (640)
T ss_pred             cchhHhHHHHHhcCceeecCCChHHHHHHHHHHHHHHHHhCCCEEEEEEeeeeccceeEEeccccCCCCccccccccCCc
Confidence            322  2344444455599999999999999999983    67999996432110 0        000 0000  000   


Q ss_pred             CCcc------------------------ccCCceEEeeeC--CcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeecc
Q 020510          223 SSFC------------------------LPIGKAKIEREG--KDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIR  276 (325)
Q Consensus       223 ~~~~------------------------~~~gk~~vl~~G--~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~  276 (325)
                      +.+.                        +.-.+.+.+..+  .++-||+.|..+..+++|.+.|   |++..++.+.+.+
T Consensus       206 ~r~V~~p~~~~~~~~~~l~~k~~a~~~~~~~~~~n~v~~~~~~~lGII~~G~ay~yVkeAl~~l---gl~~~~lklg~~~  282 (640)
T COG4231         206 GRYVRVPANALRHRHRKLLEKWEAAEEFINANPLNRVEGSDDAKLGIIASGIAYNYVKEALEDL---GLDDELLKLGTPY  282 (640)
T ss_pred             cceeecCcccchhhHHHHHHHHHHHHHHHhhCcccccccCCCCceEEEecCccHHHHHHHHHHc---CCCceeEEecCCc
Confidence            0000                        000011112223  6899999999999999986655   8999999999999


Q ss_pred             CCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcCCC
Q 020510          277 PLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPA  317 (325)
Q Consensus       277 P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~~~  317 (325)
                      |||.+.+++.++.-++|+||||..+.  +-.+|.+.+.+.+
T Consensus       283 Plp~~~i~~F~~g~~~vlVVEE~~P~--iE~qv~~~l~~~g  321 (640)
T COG4231         283 PLPEQLIENFLKGLERVLVVEEGEPF--IEEQVKALLYDAG  321 (640)
T ss_pred             CCCHHHHHHHHhcCcEEEEEecCCch--HHHHHHHHHHhcC
Confidence            99999999999999999999999874  7778888886654

>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric

Probab=99.47  E-value=1.9e-11  Score=132.84  Aligned_cols=259  Identities=15%  Similarity=0.146  Sum_probs=166.4

Q ss_pred             ccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCC-------ceeechhhHHHHHHHHHHHhccCCe
Q 020510           37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPE-------RVLDTPITEAGFTGIGVGAAYYGLK  109 (325)
Q Consensus        37 ~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~-------R~i~~GIaE~~~vg~A~GlA~~G~~  109 (325)
                      ++-.+|++.+...    ..+++..-+ +..++...-....+.++ |+.       .|+++ -+|.++++++.|.+.+|.|
T Consensus         4 ~~GNeAvA~~A~~----~~~~~~~YP-ITPss~i~e~l~~~~~~-g~~n~~G~~~~~vq~-EsE~~A~~av~GA~~aGar   76 (1165)
T TIGR02176         4 MDGNTAAAHVAYA----FSEVAAIYP-ITPSSTMGEYVDDWAAQ-GRKNIFGQTVKVVEM-QSEAGAAGAVHGALQTGAL   76 (1165)
T ss_pred             eeHHHHHHHHHHH----hCCEEEEEC-CCCCcHHHHHHHHHHHh-CCcccCCCCceEEEc-cchHHHHHHHHhHhhcCCC
Confidence            4456666665533    346666554 33333221111222332 122       46664 8999999999999999999


Q ss_pred             eEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC--CCCCC--CCCCcchHHHHHHhcCCCcEEEeeCCHH
Q 020510          110 PVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN--GAAAG--VGAQHSHCYAAWYASVPGLKVLSPYSSE  185 (325)
Q Consensus       110 p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~--G~~~g--~G~tHs~~~~a~~~~iP~~~V~~P~d~~  185 (325)
                      .++.|..+ .+....+.+.. ++-        ..+|+|+....  +...+  ....|  .+....|. -|+.+++|++.+
T Consensus        77 a~T~TSs~-GL~LM~e~l~~-~ag--------~~~P~Vi~va~R~~~~~~~~i~~dh--~Dv~~~R~-~G~ivl~s~svQ  143 (1165)
T TIGR02176        77 TTTFTASQ-GLLLMIPNMYK-IAG--------ELLPCVFHVSARAIAAHALSIFGDH--QDVMAARQ-TGFAMLASSSVQ  143 (1165)
T ss_pred             EEEecChh-HHHHHHHHHHH-HHh--------ccCCEEEEEecCCCCCCCCccCCCc--hHHHHhhc-CCeEEEeCCCHH
Confidence            99998744 55666777643 331        47898887653  33222  22334  23222233 378999999999


Q ss_pred             HHHHHHHHhHh----CCCcEEEEeCccccCc---cc------------C-----------cccccc-------CCCccc-
Q 020510          186 DARGLLKAAIR----DPDPVVFLENELLYGE---SF------------P-----------VSAEVL-------DSSFCL-  227 (325)
Q Consensus       186 e~~~~l~~a~~----~~~Pv~ir~~~~l~~~---~~------------p-----------~~~~~~-------~~~~~~-  227 (325)
                      |+.++...|++    .+.|+++..+...+..   +.            +           ..++-+       +.+..+ 
T Consensus       144 Ea~D~al~A~~lAe~~~~Pvi~~~Dgf~tsh~~~~v~~~~~~~v~~~~~~~~~~~~~~~~l~~~~p~~~G~~~~~~~~~~  223 (1165)
T TIGR02176       144 EVMDLALVAHLATIEARVPFMHFFDGFRTSHEIQKIEVLDYEDMASLVNQELVAAFRKRSMNPEHPHVRGTAQNPDIYFQ  223 (1165)
T ss_pred             HHHHHHHHHHHHHHhcCCCEEEEecCceeccccccccCCCHHHHHhhcChhhcccccccccCCCCCceeCCCCCcchhhh
Confidence            99998887775    5679998765321100   00            0           000000       000000 


Q ss_pred             -------------------------cCCc----eEEe-eeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccC
Q 020510          228 -------------------------PIGK----AKIE-REGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRP  277 (325)
Q Consensus       228 -------------------------~~gk----~~vl-~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P  277 (325)
                                               ..|+    .+.. .+..|.+||++|+....+.+|++.|+++|+++++|.+++++|
T Consensus       224 ~~e~~~~~~~~~~~~v~~~~~k~~~~~gr~y~~~e~yg~~dAe~ViV~~GS~~~~~~eav~~Lr~~G~kVGli~vr~~rP  303 (1165)
T TIGR02176       224 GREAVNPYYLAVPGIVQKYMDKIAKLTGRSYHLFDYYGAPDAERVIIAMGSVAETIEETVDYLNAKGEKVGLLKVRLYRP  303 (1165)
T ss_pred             hHHHHHHHHhhhHHHHHHHHHHHHHHhCCccCcceecCCCCCCEEEEEeCCCHHHHHHHHHHHHhcCCceeEEEEeEeCC
Confidence                                     0111    1111 134789999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHH-hCCCeEEEEecCCCCC----CHHHHHHHHHcC
Q 020510          278 LDRSTINASV-RKTNRLVTVEEGFPQH----GVGAEIWCAFFP  315 (325)
Q Consensus       278 ~d~~~l~~~~-~~~~~vvvvEe~~~~G----Glg~~v~~~l~~  315 (325)
                      ||.+.|.+.+ +..++|+|+|.....|    -|..+|...|..
T Consensus       304 Fp~e~l~~aLp~svK~I~Vler~~~~g~~g~pL~~DV~~al~~  346 (1165)
T TIGR02176       304 FSAETFFAALPKSVKRIAVLDRTKEPGAAGEPLYLDVVSAFYE  346 (1165)
T ss_pred             CCHHHHHHHHHhcCCEEEEEECCCCCCcccChHHHHHHHHHhh
Confidence            9999999988 4678999999985433    488889888864

This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.

>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]

Probab=99.40  E-value=3.8e-10  Score=109.01  Aligned_cols=256  Identities=18%  Similarity=0.177  Sum_probs=159.1

Q ss_pred             ccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEeccc
Q 020510           37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMT  116 (325)
Q Consensus        37 ~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~~  116 (325)
                      ++-.+|++.+...   ...+++..-+ ...++...-....+..+. .-.|+++ -+|.++++++.|++..|.|.+++|..
T Consensus         6 ~~Gn~AvA~~a~~---a~~~~~a~YP-ITPss~i~e~l~~~~~~~-~~~~vq~-EsE~~a~s~v~GA~~aGar~~TaTSg   79 (365)
T COG0674           6 MDGNEAVAYAAIA---AGCRVIAAYP-ITPSSEIAEYLASWKAKV-GGVFVQM-ESEIGAISAVIGASYAGARAFTATSG   79 (365)
T ss_pred             ccHHHHHHHHHHh---cCCcEEEEeC-CCCchHHHHHHHHHHhhc-CcEEEEe-ccHHHHHHHHHHHHhhCcceEeecCC
Confidence            3455666665542   3567776655 233333221123333344 3567775 99999999999999999999999985


Q ss_pred             ccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC--CCCCCCCCCc-chHHHHHHhcCCCcEEEeeCCHHHHHHHHHH
Q 020510          117 FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN--GAAAGVGAQH-SHCYAAWYASVPGLKVLSPYSSEDARGLLKA  193 (325)
Q Consensus       117 ~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~--G~~~g~G~tH-s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~  193 (325)
                      + .+..+.+.+-. ++.        ..+|+++....  |++.++ +++ .|.|....+.- ++.+++-+|.+|+.++...
T Consensus        80 ~-Gl~Lm~E~l~~-a~~--------~~~P~Vi~~~~R~~ps~g~-p~~~dq~D~~~~r~~-g~~~~~~~s~qEa~d~t~~  147 (365)
T COG0674          80 Q-GLLLMAEALGL-AAG--------TETPLVIVVAQRPLPSTGL-PIKGDQSDLMAARDT-GFPILVSASVQEAFDLTLL  147 (365)
T ss_pred             c-cHHHHHHHHHH-HHh--------ccCCeEEEEeccCcCCCcc-cccccHHHHHHHHcc-CceEEeeccHHHHHHHHHH
Confidence            5 55666776644 332        68999887653  333232 233 34444333333 7777888899999998887


Q ss_pred             hHh----CCCcEEEEeCcccc----------Ccc--------cCc-------cccccC----CC----------ccc---
Q 020510          194 AIR----DPDPVVFLENELLY----------GES--------FPV-------SAEVLD----SS----------FCL---  227 (325)
Q Consensus       194 a~~----~~~Pv~ir~~~~l~----------~~~--------~p~-------~~~~~~----~~----------~~~---  227 (325)
                      |++    ...|+++..+..+.          ..+        +..       .+.++.    .+          ...   
T Consensus       148 Af~iAe~~~~Pvi~~~D~~~~~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  227 (365)
T COG0674         148 AFNIAEKVLTPVIVLLDGFLASHEYEKIELLEQDLPDEEIPDYEPYTALDPSPPVLPGTEAVPDAYVTGFEHDNAGYPAE  227 (365)
T ss_pred             HHHHHHHhcCCEEEeeccchhcCceeeeecCccccccccccccCcccccCCCCCCcCCCCCCCceEEeeeeccccccccc
Confidence            776    36799987542210          000        000       000000    00          000   


Q ss_pred             -------------cCCc----eEEee-eCCcEEEEEechhHHHHHHHHHHHH-hcCCcEEEEEeeeccCCCHHHHHHHHh
Q 020510          228 -------------PIGK----AKIER-EGKDVTITAFSKIVGLSLKAAEILA-KEGISAEVINLRSIRPLDRSTINASVR  288 (325)
Q Consensus       228 -------------~~gk----~~vl~-~G~dv~Iia~G~~~~~a~~Aa~~L~-~~Gi~~~Vi~~~~l~P~d~~~l~~~~~  288 (325)
                                   ..|.    ..+.. ++.+++||++|+....+.+++..+. ++|++++++.+++++|||.+.|.+.++
T Consensus       228 ~~v~~r~~~k~~~~~~~~~~~~~~~g~~DAe~viV~~Gss~~~~~~a~~~~~~~~g~kvg~l~vr~~rPFp~~~i~~~l~  307 (365)
T COG0674         228 DDVIKRALRKINELTGREYEPFLYYGYEDAEIVIVAMGSSKGSTAEAVVDLLRDKGEKVGLLKVRTLRPFPAEEIREVLP  307 (365)
T ss_pred             hHHHHHHHHHHHHHhcCCCccceeecCCCcCEEEEEeccchHhHHHHHHHHHHhcCceEEEEEEEEeCCCCHHHHHHHhc
Confidence                         0011    11111 4578999999988888888877655 779999999999999999999999999


Q ss_pred             CCCeEEEEecCCCCCCHHHHHH
Q 020510          289 KTNRLVTVEEGFPQHGVGAEIW  310 (325)
Q Consensus       289 ~~~~vvvvEe~~~~GGlg~~v~  310 (325)
                      +...+.|++-....|++++-+.
T Consensus       308 ~~~~~~Vl~~e~~~g~~~~~l~  329 (365)
T COG0674         308 KTNAVVVLDVEISLGGLAEPLY  329 (365)
T ss_pred             ccceeEEEEEccCCccchhhHH
Confidence            8876666666555566444333

>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional

Probab=99.35  E-value=7.4e-11  Score=126.93  Aligned_cols=273  Identities=13%  Similarity=0.029  Sum_probs=175.4

Q ss_pred             cccccCccc--ccccHHHHHHHHHHHHHhcCCc--E---EEEecCCCCccCc--cccchhHHHHhCC-----Cceeechh
Q 020510           26 NLRNYSSAV--KQMMVREALNSALDEEMSADPK--V---FLMGEEVGEYQGA--YKISKGLLEKYGP-----ERVLDTPI   91 (325)
Q Consensus        26 ~~~~~~~~~--~~~s~~~a~~~~L~~l~~~d~~--i---v~l~~D~~~~~g~--~~~~~~~~~~~gp-----~R~i~~GI   91 (325)
                      +...|....  .-++-.+|+.+.+.+-.+.|..  +   -++++    +.|+  -.+...|. ++.+     +-+++.++
T Consensus         7 l~~~~~~~~g~~~l~GneAivr~~l~q~~~d~~aG~~ta~~vsg----YpGsP~~~i~~~l~-~~~~~l~~~~i~~e~~~   81 (1159)
T PRK13030          7 LDDRYTATRGRIFLTGTQALVRLLLMQRRRDRARGLNTAGFVSG----YRGSPLGGVDQALW-KAKKLLDASDIRFLPGI   81 (1159)
T ss_pred             cchhhccccCCEeeeHHHHHHHHHHHhhhHHHhcCCCccceEEE----eCCCCHHHHHHHHH-HhhhhhcccceEEeecC
Confidence            344454432  3567899999999886655533  2   22222    2222  12223333 3311     37899999


Q ss_pred             hHHHHHHHHHHHh---------ccCCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCC-CCCC
Q 020510           92 TEAGFTGIGVGAA---------YYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAG-VGAQ  161 (325)
Q Consensus        92 aE~~~vg~A~GlA---------~~G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g-~G~t  161 (325)
                      +|.-++.++.|.+         ..|.+.+++.. ...++|+.|.+++ +.+.    |...+-.++++..|..+.. .-..
T Consensus        82 NEkvA~e~a~Gaq~~~~~~~~~~~Gv~~l~~~K-~~GvnvaaD~l~~-~n~~----G~~~~GG~v~v~gDDpg~~SSq~e  155 (1159)
T PRK13030         82 NEELAATAVLGTQQVEADPERTVDGVFAMWYGK-GPGVDRAGDALKH-GNAY----GSSPHGGVLVVAGDDHGCVSSSMP  155 (1159)
T ss_pred             CHHHHHHHHHHhccccccCCccccceEEEEecC-cCCcccchhHHHH-HHhh----cCCCCCcEEEEEecCCCCccCcCH
Confidence            9999999999999         77777799888 6689999999986 4432    2223556666654433211 0111


Q ss_pred             cchHH-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEeCcccc--------Cc-cc-Cccc-cccCCC-
Q 020510          162 HSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLY--------GE-SF-PVSA-EVLDSS-  224 (325)
Q Consensus       162 Hs~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~ir~~~~l~--------~~-~~-p~~~-~~~~~~-  224 (325)
                      | |+. .+.+..||   |+.|+|++|++++.+++++    .+-||.+|......        .. +. +..+ ....+. 
T Consensus       156 q-dSr~~~~~a~iP---vl~Ps~~qE~~d~~~~a~~lSr~~~~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~~f~~~~~  231 (1159)
T PRK13030        156 H-QSDFALIAWHMP---VLNPANVQEYLDFGLYGWALSRYSGAWVGFKAISETVESGSTVDLDPDRTRWPAPEDFTPPAG  231 (1159)
T ss_pred             H-HHHHHHHHcCCc---eeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCccccCCCcc
Confidence            3 332 36667777   9999999999999999997    36799998542210        00 00 0000 000000 


Q ss_pred             ---ccc--------------------------cCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcC-----CcEEEE
Q 020510          225 ---FCL--------------------------PIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEG-----ISAEVI  270 (325)
Q Consensus       225 ---~~~--------------------------~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~G-----i~~~Vi  270 (325)
                         ..+                          ++.+..+-.++.++.||++|.....++||.+.|...+     +.++|+
T Consensus       232 ~~~~r~~~~p~~~~~~~~~~rl~~~~~~~~~~~ln~~~~~~~~~~iGIItsG~ay~~v~EAL~~Lgl~~~~~~~lgiril  311 (1159)
T PRK13030        232 GLHNRWPDLPSLAIEARLAAKLPAVRAFARANSIDRWVAPSPDARVGIVTCGKAHLDLMEALRRLGLDDADLRAAGIRIY  311 (1159)
T ss_pred             cccccCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEEEEeCccHHHHHHHHHHcCCCcccccccCccEE
Confidence               000                          1222111122367999999999999999999885433     247888


Q ss_pred             EeeeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcC
Q 020510          271 NLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFP  315 (325)
Q Consensus       271 ~~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~  315 (325)
                      .+...+|||.+.+.+.++..++|+||||....  +-.+|.+.+.+
T Consensus       312 Kvgm~~PL~~~~i~~F~~g~d~VlVVEE~~p~--iE~Qlk~~l~~  354 (1159)
T PRK13030        312 KVGLSWPLEPTRLREFADGLEEILVIEEKRPV--IEQQIKDYLYN  354 (1159)
T ss_pred             EeCCccCCCHHHHHHHHhcCCEEEEEeCCchH--HHHHHHHHHHh
Confidence            88899999999999999999999999998863  66777777754

>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]

Probab=99.30  E-value=1e-10  Score=117.49  Aligned_cols=284  Identities=15%  Similarity=0.189  Sum_probs=175.5

Q ss_pred             ChhhhHHhhhhcCCCCccccc--c---ccccccccCc-----ccccccHHHHHHHHHHHHHhcCCc-EEEEecCCCCccC
Q 020510            1 MWGIIRQKVAAGGGSPVARIR--P---VVSNLRNYSS-----AVKQMMVREALNSALDEEMSADPK-VFLMGEEVGEYQG   69 (325)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~-----~~~~~s~~~a~~~~L~~l~~~d~~-iv~l~~D~~~~~g   69 (325)
                      .|++.+|+-+|.|+.|.|...  |   .-...+.|+.     ...+.....+.++.+.++++.|++ ..+.++|..+|.+
T Consensus       355 ~~~~ap~~~~Rm~~~p~angg~l~~eL~lPD~r~~~v~~~~~g~~~~~~t~~lg~~l~dv~k~N~~~fRvf~PDE~aSNr  434 (793)
T COG3957         355 LRELAPKGEERMGANPHANGGLLPRELPLPDLRDYAVEVSEPGAVTAESTTALGRFLRDVMKLNPDNFRVFGPDETASNR  434 (793)
T ss_pred             HHHhccccccccCCCCcccCccccccCCCCChhhcCcccCCCCccchhhHHHHHHHHHHHHhcCccceEeeCCCcchhhh
Confidence            389999999999999999987  2   2222233333     323445578999999999999988 9999999987766


Q ss_pred             ccccchhHHHHh------------CCCceeechhhHHHHHHHHHHHhccCCeeEEecccccHHHHHHHHHHHHHhhc---
Q 020510           70 AYKISKGLLEKY------------GPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKS---  134 (325)
Q Consensus        70 ~~~~~~~~~~~~------------gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~~~~f~~ra~dqi~~~~a~~---  134 (325)
                      ..++.+.+...+            ...|+++ ..+|+...|.+.|.++.|.+-++++|-+|.  +..|-+.|+.+++   
T Consensus       435 l~~v~~~tkr~~~~~~~~ed~~lsp~GRV~e-~LSEh~c~Gwlegy~LtGr~glf~sYEaF~--~iv~sm~nQh~kwl~v  511 (793)
T COG3957         435 LGGVLKVTKRVWMAVTLPEDDFLSPDGRVME-VLSEHACQGWLEGYLLTGRHGLFASYEAFA--HIVDSMFNQHAKWLKV  511 (793)
T ss_pred             hHHHHHHhhhhhcccccCcccccCCCceeeh-hhcHHHHHHHHHHHHhcCCccceeeHHHHH--HHHHHHHhhhHHHHHH
Confidence            544433333221            1368888 699999999999999999999999987753  2233333333322   


Q ss_pred             ----cccCCCCccCC-EEEEeCCCCC--CCCCCCcch-HHH-HHHhcCC-CcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510          135 ----NYMSSGQISVP-IVFRGPNGAA--AGVGAQHSH-CYA-AWYASVP-GLKVLSPYSSEDARGLLKAAIRDPDPVVFL  204 (325)
Q Consensus       135 ----~~~~~~~~~~p-vv~~~~~G~~--~g~G~tHs~-~~~-a~~~~iP-~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir  204 (325)
                          .|+    .+.| ..++...+..  ..+|-||+. .++ .++...+ .+.|+.|.|.+-+..++..+++..+-+.+.
T Consensus       512 ~~e~~wr----~~~~Sln~l~TS~vw~QdhNGfsHQdPgf~~~~~~k~~d~vRvyfPpDaNtlLav~d~~l~s~n~in~i  587 (793)
T COG3957         512 TREVEWR----RPIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVANKKSDIVRVYFPPDANTLLAVYDHCLRSRNKINVI  587 (793)
T ss_pred             HHhcccC----CCCCcccceeehhhhhcccCCCccCCchHHHHHHhhccCceeEecCCCCcchhhhhhHHhhccCceEEE
Confidence                222    2332 1112122222  347899943 333 4555455 678999999999999999999975533332


Q ss_pred             -eCccccCcccCccccccCCCccccCC--ceEEee--e-CCcEEEEEechhH-HHHHHHHHHHHhcC--CcEEEE---Ee
Q 020510          205 -ENELLYGESFPVSAEVLDSSFCLPIG--KAKIER--E-GKDVTITAFSKIV-GLSLKAAEILAKEG--ISAEVI---NL  272 (325)
Q Consensus       205 -~~~~l~~~~~p~~~~~~~~~~~~~~g--k~~vl~--~-G~dv~Iia~G~~~-~~a~~Aa~~L~~~G--i~~~Vi---~~  272 (325)
                       .+|.    +.|.--.+.+......-|  -+++..  + ..|+++.+.|.+. -++++|+..|++++  +.++||   |+
T Consensus       588 Va~K~----p~pq~~t~~qA~~~~~~G~~iwewas~d~gepdvV~A~~Gd~~t~e~laAa~~L~e~~p~l~vRvVnVvdl  663 (793)
T COG3957         588 VASKQ----PRPQWLTMEQAEKHCTDGAGIWEWASGDDGEPDVVMACAGDVPTIEVLAAAQILREEGPELRVRVVNVVDL  663 (793)
T ss_pred             EecCC----CcceeecHHHHHHHhhcCcEEEEeccCCCCCCCEEEEecCCcchHHHHHHHHHHHHhCccceEEEEEEecc
Confidence             2222    101000000000001111  122221  1 2589999999665 79999999999998  666555   55


Q ss_pred             eeccCCC-------HHHHHHHHhCCCeEEE
Q 020510          273 RSIRPLD-------RSTINASVRKTNRLVT  295 (325)
Q Consensus       273 ~~l~P~d-------~~~l~~~~~~~~~vvv  295 (325)
                      ..|.|-.       .+.+....-+.+.++.
T Consensus       664 ~rLq~~~~hphg~~d~efd~lFt~d~pvif  693 (793)
T COG3957         664 MRLQPPHDHPHGLSDAEFDSLFTTDKPVIF  693 (793)
T ss_pred             hhccCCccCCCCCCHHHHHhcCCCCcceee
Confidence            5555433       3345554444455543

>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated

Probab=99.27  E-value=8.1e-10  Score=118.75  Aligned_cols=273  Identities=15%  Similarity=0.054  Sum_probs=178.3

Q ss_pred             ccccccccCccc--ccccHHHHHHHHHHHHHhcC--CcE---EEEecCCCCccCc--cccchhHHHHhCC-----Cceee
Q 020510           23 VVSNLRNYSSAV--KQMMVREALNSALDEEMSAD--PKV---FLMGEEVGEYQGA--YKISKGLLEKYGP-----ERVLD   88 (325)
Q Consensus        23 ~~~~~~~~~~~~--~~~s~~~a~~~~L~~l~~~d--~~i---v~l~~D~~~~~g~--~~~~~~~~~~~gp-----~R~i~   88 (325)
                      ..+....|....  .-++-.+|+.+.+.+-.+.|  -.+   -++++    +.|+  -.+...|. ++..     +-+++
T Consensus        12 ~~~l~d~y~~~~g~~~l~G~qAivR~~l~q~~~D~~aG~~ta~~vsG----YpGsP~~~id~~l~-~~~~~l~~~~i~fe   86 (1165)
T PRK09193         12 DVTLDDKYTLERGRVFLTGTQALVRLPLLQRERDRAAGLNTAGFVSG----YRGSPLGGLDQELW-RAKKHLAAHDIVFQ   86 (1165)
T ss_pred             CCCcccccccccCCeeeeHHHHHHHHHHHHhhHHHhcCCCccceEEe----eCCCCHHHHHHHHH-HhhhhhcccceEEe
Confidence            445555666543  35678999999988755555  223   33332    2222  12223333 2211     37899


Q ss_pred             chhhHHHHHHHH---------HHHhccCCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCC-C
Q 020510           89 TPITEAGFTGIG---------VGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAG-V  158 (325)
Q Consensus        89 ~GIaE~~~vg~A---------~GlA~~G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g-~  158 (325)
                      -|++|.-++.++         .|.+..|.+.+++.. ...++|+.|.+++ +.+.    |...+-.++++..|..+.. .
T Consensus        87 ~~~NEkvAae~~~GsQ~~~~~~~a~~~Gv~~l~y~K-~pGvn~aaD~l~~-~n~~----G~~~~GGvv~v~gDDpg~~SS  160 (1165)
T PRK09193         87 PGLNEDLAATAVWGSQQVNLFPGAKYDGVFGMWYGK-GPGVDRSGDVFRH-ANAA----GTSPHGGVLALAGDDHAAKSS  160 (1165)
T ss_pred             eccCHHHHHHHHhhhcccccccceeeccceEEEecC-cCCccccHhHHHH-HHhh----cCCCCCcEEEEEecCCCCccc
Confidence            999999999999         777999999999998 6689999999986 3432    2223455666654433211 1


Q ss_pred             CCCcchHH-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEeCcccc-----------CcccCccc--cc
Q 020510          159 GAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLY-----------GESFPVSA--EV  220 (325)
Q Consensus       159 G~tHs~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~ir~~~~l~-----------~~~~p~~~--~~  220 (325)
                      -..| |+. ...+..||   |+.|+|++|++++..+++.    .+-||.+|......           +.......  +.
T Consensus       161 q~eq-dSr~~~~~a~iP---vl~Ps~~qE~~d~~~~g~~lSr~~g~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~~f~~  236 (1165)
T PRK09193        161 TLPH-QSEHAFKAAGMP---VLFPANVQEILDYGLHGWAMSRYSGLWVGMKTVTDVVESSASVDVDPDRVQIVLPEDFEM  236 (1165)
T ss_pred             cchh-hhHHHHHHcCCc---eeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCcccccC
Confidence            1123 333 36667777   9999999999999999987    36799998532210           00000000  00


Q ss_pred             cCC----Ccc------------------------ccCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCc------
Q 020510          221 LDS----SFC------------------------LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGIS------  266 (325)
Q Consensus       221 ~~~----~~~------------------------~~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~------  266 (325)
                      +..    .+.                        -++++..+-.++.++.||++|.....+++|.+.|   |++      
T Consensus       237 ~~~g~~~r~~~~p~~~~~~~~~~rl~a~~a~a~~n~ln~~~~~~~~~~iGIItsG~~y~~v~eal~~l---g~~~~~~~~  313 (1165)
T PRK09193        237 PPGGLNIRWPDPPLEQEARLLDYKLYAALAYARANKLDRVVIDSPNARLGIVAAGKAYLDVRQALRDL---GLDEETAAR  313 (1165)
T ss_pred             CcccccccCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCeeecCCCCCCEEEEecCccHHHHHHHHHHc---CCChhhhcc
Confidence            000    000                        0111111101136799999999999999998776   454      


Q ss_pred             --EEEEEeeeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcC
Q 020510          267 --AEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFP  315 (325)
Q Consensus       267 --~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~  315 (325)
                        ++|+.+...+|||.+.+++.++....|+||||-...  +-++|.+.+.+
T Consensus       314 ~gi~ilKvgm~~PL~~~~i~~Fa~g~~~vlVVEE~~p~--iE~qlk~~l~~  362 (1165)
T PRK09193        314 LGIRLYKVGMVWPLEPQGVRAFAEGLDEILVVEEKRQI--IEYQLKEELYN  362 (1165)
T ss_pred             cCCCEEEeCCCCCCCHHHHHHHHhcCCEEEEEecCchH--HHHHHHHHHhh
Confidence              899999999999999999999999999999998764  77888888854

>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional

Probab=99.22  E-value=6.3e-10  Score=119.40  Aligned_cols=279  Identities=13%  Similarity=0.045  Sum_probs=176.4

Q ss_pred             cccccccccCccc--ccccHHHHHHHHHHHHHhcCCc--EE---EEecCCC-CccCccccchhHHHH---h-CCCceeec
Q 020510           22 PVVSNLRNYSSAV--KQMMVREALNSALDEEMSADPK--VF---LMGEEVG-EYQGAYKISKGLLEK---Y-GPERVLDT   89 (325)
Q Consensus        22 ~~~~~~~~~~~~~--~~~s~~~a~~~~L~~l~~~d~~--iv---~l~~D~~-~~~g~~~~~~~~~~~---~-gp~R~i~~   89 (325)
                      +..++...|....  .-++-.+|+.+.+..-.+.|.+  +-   ++++=-+ .++   .+...|.+.   . ..+-+++-
T Consensus        14 ~~~~l~d~y~~~~g~~~l~G~qAlvR~~l~q~~~D~~aGl~tag~vsgYpGSPl~---~id~~l~~~~~~l~~~~i~fe~   90 (1186)
T PRK13029         14 RAVSLDDKYTLERGRIYISGTQALVRLPLLQRARDRRAGLNTAGFISGYRGSPLG---ALDQALWKAKKHLAAADVVFQP   90 (1186)
T ss_pred             ccCCcccccccccCCEeecHHHHHHHHHHHHhHHHHHcCCCccceEEecCCCCHH---HHHHHHHHHhhhccccceEEee
Confidence            4455666776643  3567889999888544443321  11   2221111 111   222334332   1 01378899


Q ss_pred             hhhHHHH---------HHHHHHHhccCCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCC-CC
Q 020510           90 PITEAGF---------TGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAG-VG  159 (325)
Q Consensus        90 GIaE~~~---------vg~A~GlA~~G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g-~G  159 (325)
                      |++|.-+         +.++.|.+..|.+.+++.. ...++|+.|.+++....     +...+-.++++..|..+.. .-
T Consensus        91 ~~NEklAatav~Gsq~~e~~~~a~~dGv~~lwygK-~pGvn~aaD~l~h~n~~-----gt~~~GGvv~v~gDDpg~~SSq  164 (1186)
T PRK13029         91 GVNEELAATAVWGSQQLELDPGAKRDGVFGMWYGK-GPGVDRSGDALRHANLA-----GTSPLGGVLVLAGDDHGAKSSS  164 (1186)
T ss_pred             cCCHHHHHHHhhhhhhcccccceeeccceEEEecC-cCCcccchhHHHHhhcc-----ccCCCCcEEEEEecCCCCcccc
Confidence            9999999         7777888889999999998 66899999999864321     1234556666654433211 11


Q ss_pred             CCcchHH-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEeCcccc-----------CcccCccccccCC
Q 020510          160 AQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLY-----------GESFPVSAEVLDS  223 (325)
Q Consensus       160 ~tHs~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~ir~~~~l~-----------~~~~p~~~~~~~~  223 (325)
                      ..| |+. ...+..||   |+.|+|++|+.++..+++.    .+-||.++......           +.......+....
T Consensus       165 ~eq-dSr~~~~~a~iP---vl~Ps~~qE~~d~~~~a~~lSr~~g~~V~lr~~t~v~~s~~~V~~~~~r~~~~~p~~f~~~  240 (1186)
T PRK13029        165 VAH-QSDHTFIAWGIP---VLYPASVQDYLDYGLHGWAMSRYSGLWVGMKCVTEVVESTASVDLDPDRVDIVLPDDFVLP  240 (1186)
T ss_pred             CHH-HHHHHHHHcCCc---eeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEeeeeeecceeeecCCcccccCCcccccCC
Confidence            123 333 36667777   9999999999999999887    36799998543211           0000000000000


Q ss_pred             C----ccc--------------------------cCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhc-----CCcEE
Q 020510          224 S----FCL--------------------------PIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE-----GISAE  268 (325)
Q Consensus       224 ~----~~~--------------------------~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~-----Gi~~~  268 (325)
                      .    ..+                          ++++..+-.++.++.||++|.....+++|.+.|.-.     .+.++
T Consensus       241 ~~g~~~r~~~~p~~~e~~~~~~kl~a~~a~a~~n~ln~~~~~~~~~~~GIItsG~~y~~v~eAl~~lgl~~~~~~~~gi~  320 (1186)
T PRK13029        241 PGGLHIRWPDDPLAQEERMLEFKWYAALAYVRANRLNRLVIDGPNPRLGIIAAGKAYLDVRQALRDLGLDDATCAALGIR  320 (1186)
T ss_pred             ccccccccCCCcHHHHHHHHHHHHHHHHHHHHhCCCCEEeccCCCCCEEEEecCccHHHHHHHHHHcCCChhhccccCCC
Confidence            0    000                          111111101236799999999999999998766211     12389


Q ss_pred             EEEeeeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcC
Q 020510          269 VINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFP  315 (325)
Q Consensus       269 Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~  315 (325)
                      |+.+...+|||.+.+++.++..+.|+||||-...  +-++|.+.+.+
T Consensus       321 ilKvgm~~PL~~~~i~~Fa~g~d~vlVVEE~~p~--iE~qlk~~l~~  365 (1186)
T PRK13029        321 LLKVGCVWPLDPQSVREFAQGLEEVLVVEEKRAV--IEYQLKEELYN  365 (1186)
T ss_pred             EEEeCCCCCCCHHHHHHHHhcCCEEEEEecCchH--HHHHHHHHHhh
Confidence            9999999999999999999999999999998764  77888888865

>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed

Probab=99.21  E-value=1.1e-09  Score=113.79  Aligned_cols=259  Identities=17%  Similarity=0.212  Sum_probs=179.9

Q ss_pred             HHHHHHhcCCcEEEEecCCCCccCcccc----------------chhHHHHhCCCceeechhhHHHHHHHHHHHhccC--
Q 020510           46 ALDEEMSADPKVFLMGEEVGEYQGAYKI----------------SKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG--  107 (325)
Q Consensus        46 ~L~~l~~~d~~iv~l~~D~~~~~g~~~~----------------~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G--  107 (325)
                      ++..|+.+...|-+.++|..+  |+|.-                ...|.+.-|+=-++|...+|.+++|+-+|.|...  
T Consensus       896 AfGsLl~eG~~VRL~GQDsrR--GTF~QRHavl~D~~tg~e~~Pl~~l~~~q~~f~vydS~LSEyAa~GFEYGYSv~~pd  973 (1228)
T PRK12270        896 AFGSLLLEGTPVRLSGQDSRR--GTFSQRHAVLIDRETGEEYTPLQNLSDDQGKFLVYDSLLSEYAAMGFEYGYSVERPD  973 (1228)
T ss_pred             HHHHHHhcCceeeeeccccCC--cceeeeeEEEecCCCCcccCcHhhcCCCcceEEEecchhhHHHhhccceeeecCCCc
Confidence            445677788999999999875  55532                1123333333456899999999999999999885  


Q ss_pred             CeeEEecccccH---HHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCcch-HHHHHHhc--CCCcEEEee
Q 020510          108 LKPVVEFMTFNF---SMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSH-CYAAWYAS--VPGLKVLSP  181 (325)
Q Consensus       108 ~~p~v~~~~~~f---~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tHs~-~~~a~~~~--iP~~~V~~P  181 (325)
                      ..++++-++.+|   .|-..|++..+ +..+|    .+...||+..+.|. -|.|+.||. .+|.+|.-  -.||+|..|
T Consensus       974 aLVlWEAQFGDF~NGAQtiIDefIss-~e~KW----gQ~S~vvlLLPHGy-EGQGPdHSSaRiERfLqlcAe~nm~Va~p 1047 (1228)
T PRK12270        974 ALVLWEAQFGDFANGAQTIIDEFISS-GEAKW----GQRSGVVLLLPHGY-EGQGPDHSSARIERFLQLCAEGNMTVAQP 1047 (1228)
T ss_pred             ceeeehhhhcccccchHHHHHHHHhh-hHhhh----ccccceEEEccCCc-CCCCCCcchHHHHHHHHhhccCCeEEEcc
Confidence            778888888887   56888988654 55556    57888999988765 578999964 77876654  579999999


Q ss_pred             CCHHHHHHHHHH-hHhC-CCcEEEEeCccccCcccCccc--cccCCCccccCCceEEeeeC-CcEEEEEechhHHHHHHH
Q 020510          182 YSSEDARGLLKA-AIRD-PDPVVFLENELLYGESFPVSA--EVLDSSFCLPIGKAKIEREG-KDVTITAFSKIVGLSLKA  256 (325)
Q Consensus       182 ~d~~e~~~~l~~-a~~~-~~Pv~ir~~~~l~~~~~p~~~--~~~~~~~~~~~gk~~vl~~G-~dv~Iia~G~~~~~a~~A  256 (325)
                      ++|..++.+|+. ++.. ..|.+|..+|.+.+.+.....  ++.+..+.--++...+.... -+-+|+++|..+....+.
T Consensus      1048 sTPA~yFHLLRrqa~~~~~rPLvVfTPKSmLR~KaA~S~vedFT~g~F~pVi~D~~~~~~~~V~RVlLcSGKvYYdL~a~ 1127 (1228)
T PRK12270       1048 STPANYFHLLRRQALSGPRRPLVVFTPKSMLRLKAAVSDVEDFTEGKFRPVIDDPTVDDGAKVRRVLLCSGKLYYDLAAR 1127 (1228)
T ss_pred             CChHHHHHHHHHHhhcCCCCCeEEEChHHhhcchhhcCCHHHhccCCceecCCCCCCCCccceeEEEEEcchhHHHHHHH
Confidence            999999999975 4443 579999999887654322111  11111111111111111111 245889999999988765


Q ss_pred             HHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCC---eEEEEecCCCCCCHHHHHHHHHc
Q 020510          257 AEILAKEGISAEVINLRSIRPLDRSTINASVRKTN---RLVTVEEGFPQHGVGAEIWCAFF  314 (325)
Q Consensus       257 a~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~---~vvvvEe~~~~GGlg~~v~~~l~  314 (325)
                      .++  ...-++.|+.+-.|+|||.+.|.+.+.++.   .++.+-|...+-|-...++..|.
T Consensus      1128 R~k--~~~~d~AIvRvEQLyP~p~~~l~~~l~~ypna~e~~wvQeEP~NqGaw~f~~~~l~ 1186 (1228)
T PRK12270       1128 REK--DGRDDTAIVRVEQLYPLPRAELREALARYPNATEVVWVQEEPANQGAWPFMALNLP 1186 (1228)
T ss_pred             HHh--cCCCceEEEEhhhhCCCCHHHHHHHHHhCCCcceeEEeccCcccCCCchhhhhhhH
Confidence            432  334579999999999999999999999874   35666665666666666655543

>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes

Probab=99.20  E-value=2.5e-10  Score=96.32  Aligned_cols=117  Identities=30%  Similarity=0.334  Sum_probs=87.0

Q ss_pred             HhCCCceeechhhHHHHHHHHHHHhccCCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC-CCCCCC
Q 020510           80 KYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGV  158 (325)
Q Consensus        80 ~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~~g~  158 (325)
                      +. +++.+..++.|++++++|.|+|+.|.+|++.+.+..++..+++++.+ ++.        .++|++++..+ +.....
T Consensus        32 ~~-~~~~~~~~~~E~~a~~~A~G~a~~~~~~v~~~~~gpg~~~~~~~l~~-a~~--------~~~Pvl~i~~~~~~~~~~  101 (154)
T cd06586          32 EG-DKRIIDTVIHELGAAGAAAGYARAGGPPVVIVTSGTGLLNAINGLAD-AAA--------EHLPVVFLIGARGISAQA  101 (154)
T ss_pred             cc-CCceEEeeCCHHHHHHHHHHHHHhhCCEEEEEcCCCcHHHHHHHHHH-HHh--------cCCCEEEEeCCCChhhhc
Confidence            45 78999999999999999999999988888887756677899999984 443        57999998754 333323


Q ss_pred             CCCc-chHHHHHHhcCCCcEEEeeCCHHHHHHHHHH---hHhCCCcEEEEeC
Q 020510          159 GAQH-SHCYAAWYASVPGLKVLSPYSSEDARGLLKA---AIRDPDPVVFLEN  206 (325)
Q Consensus       159 G~tH-s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~---a~~~~~Pv~ir~~  206 (325)
                      +.+| .+...++++.+|++.+..|++.++...+.+.   +...++|++++.+
T Consensus       102 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~gPv~l~ip  153 (154)
T cd06586         102 KQTFQSMFDLGMYRSIPEANISSPSPAELPAGIDHAIRTAYASQGPVVVRLP  153 (154)
T ss_pred             cCcccccCHHHHHHHhhheEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEcc
Confidence            4445 2344689999999999988776655544432   2334679999754

Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca

>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]

Probab=98.83  E-value=1.5e-07  Score=94.63  Aligned_cols=260  Identities=18%  Similarity=0.212  Sum_probs=178.2

Q ss_pred             HHHHHHHHhcCCcEEEEecCCCCccCccccchh-HHHH----------------hCCCceeechhhHHHHHHHHHHHhcc
Q 020510           44 NSALDEEMSADPKVFLMGEEVGEYQGAYKISKG-LLEK----------------YGPERVLDTPITEAGFTGIGVGAAYY  106 (325)
Q Consensus        44 ~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~-~~~~----------------~gp~R~i~~GIaE~~~vg~A~GlA~~  106 (325)
                      +-++..|+++.-.|-+-++|+.+  |+|.-.+. |.++                -.|=-+-|...+|.+.+|+-.|.|+.
T Consensus       656 alAFgsLl~EG~hVRlSGQDVER--GTFShRH~VLHDQ~~d~~~y~PlnhL~~~Qa~ytV~NSSLSEygVLGFElGYsm~  733 (1017)
T KOG0450|consen  656 ALAFGSLLKEGIHVRLSGQDVER--GTFSHRHHVLHDQEVDKRTYIPLNHLWPNQAPYTVCNSSLSEYGVLGFELGYSMA  733 (1017)
T ss_pred             HHHHHHHHhcCceEEeecccccc--cccccchhhhcccccCcceecchhhcCCCCCceeeeccchhhhheecceeccccc
Confidence            33455788889999999999975  56643111 2111                11334567889999999999999999


Q ss_pred             --CCeeEEecccccH---HHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCcch-HHHHHHhc-------C
Q 020510          107 --GLKPVVEFMTFNF---SMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSH-CYAAWYAS-------V  173 (325)
Q Consensus       107 --G~~p~v~~~~~~f---~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tHs~-~~~a~~~~-------i  173 (325)
                        ...++++.++.+|   .+..+||+.. .+..+|.    +...+|+..+.|. .|.|+.||. ..|.+|..       +
T Consensus       734 sPNaLVlWEAQFGDFaNtAQ~IiDQFIs-sGqaKW~----rqsGlVllLPHGy-eG~GPEHSSaR~ERfLQm~nddp~~~  807 (1017)
T KOG0450|consen  734 SPNALVLWEAQFGDFANTAQCIIDQFIS-SGQAKWV----RQSGLVLLLPHGY-EGMGPEHSSARPERFLQMSNDDPDVF  807 (1017)
T ss_pred             CCCceEEeehhhccccccchhhHHhHhc-cchhhhh----hhcCeEEEccCCc-CCCCcccccccHHHHHHhccCCCccC
Confidence              5788999888887   5688999864 4556664    5678888888765 567999964 55544421       1


Q ss_pred             -------------CCcEEEeeCCHHHHHHHHHHhHh--CCCcEEEEeCccccCcccCcc--ccccCCCccc-----cCCc
Q 020510          174 -------------PGLKVLSPYSSEDARGLLKAAIR--DPDPVVFLENELLYGESFPVS--AEVLDSSFCL-----PIGK  231 (325)
Q Consensus       174 -------------P~~~V~~P~d~~e~~~~l~~a~~--~~~Pv~ir~~~~l~~~~~p~~--~~~~~~~~~~-----~~gk  231 (325)
                                   =|+.|+-+++|..++.+|+.-+.  ...|.+|..++.|.+.+....  .+. ++...|     +-|+
T Consensus       808 p~~~~~~~~Ql~dcNw~vvn~tTPaNyfHvLRRQi~~~FRKPliif~pKsLLRHp~arS~~~ef-~~g~~fq~vi~e~g~  886 (1017)
T KOG0450|consen  808 PDEEEFLQRQLQDCNWQVVNCTTPANYFHVLRRQIHRPFRKPLIIFTPKSLLRHPEARSSFSEF-DEGTGFQRVIPEDGK  886 (1017)
T ss_pred             CcccHHHHHHHhcCCeEEEecCChHHHHHHHHHHhhhcccCceEEeccHHhhcCccccCCHHHh-ccCCCCceecccccc
Confidence                         37789999999999999986554  578999998887765432111  011 111111     1233


Q ss_pred             eEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCC--eEEEEecCCCCCCHHHHH
Q 020510          232 AKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN--RLVTVEEGFPQHGVGAEI  309 (325)
Q Consensus       232 ~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~--~vvvvEe~~~~GGlg~~v  309 (325)
                      .-.-.++-+-+|+++|.......++-+....+ -++.+..+-.|.|||.+.|.+.++++.  .|+...|...+-|-.+.|
T Consensus       887 ~~~~pe~vkrlv~csGkVyydL~k~Rk~~~~~-~~vAi~RvEQl~PFp~dli~~e~~~YpnaEivWcQEE~~NmG~w~Yv  965 (1017)
T KOG0450|consen  887 AAQNPENVKRLVFCSGKVYYDLTKERKEVGLE-GDVAITRVEQLSPFPFDLIQQELNKYPNAEIVWCQEEHKNMGAWDYV  965 (1017)
T ss_pred             ccCChhhceEEEEecceEehhhhHHHHhcCcc-cceeEEEeeccCCCcHHHHHHHHHhCCCceeeehhhhhcccCchhhc
Confidence            33334556778999998888776665554322 378999999999999999999999886  466664444566666666


Q ss_pred             HHHH
Q 020510          310 WCAF  313 (325)
Q Consensus       310 ~~~l  313 (325)
                      .-.+
T Consensus       966 ~PRl  969 (1017)
T KOG0450|consen  966 EPRL  969 (1017)
T ss_pred             chHH
Confidence            5443

>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]

Probab=98.56  E-value=4.9e-07  Score=94.13  Aligned_cols=264  Identities=18%  Similarity=0.233  Sum_probs=168.2

Q ss_pred             cHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccc----------------hhHHHHhCCCceeechhhHHHHHHHHH
Q 020510           38 MVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKIS----------------KGLLEKYGPERVLDTPITEAGFTGIGV  101 (325)
Q Consensus        38 s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~----------------~~~~~~~gp~R~i~~GIaE~~~vg~A~  101 (325)
                      .+..+=.-+...++.....+.+-+.|..+  |+|...                ..+...-|.=..+|.+.+|.+++++=.
T Consensus       567 DW~~aE~LAfatll~eG~~iRlsGqDs~R--GTF~hRHaVlhdq~~~~~y~PL~~l~~~q~~f~v~nS~LSEeAvlgFEY  644 (906)
T COG0567         567 DWGMAETLAFATLLDEGHPIRLSGQDSGR--GTFSHRHAVLHDQKTGETYIPLNHLSKGQGKFEVINSPLSEEAVLGFEY  644 (906)
T ss_pred             chhHHHHhcccceeccCCccccccccCCC--cCccccceeeecccCccccChhhhcccccceEEEEechhhHHHHHhhhh
Confidence            33333333344566677888888898864  455321                112222223356889999999999999


Q ss_pred             HHhccC--CeeEEecccccH---HHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCcch-HHHHHHhcC--
Q 020510          102 GAAYYG--LKPVVEFMTFNF---SMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSH-CYAAWYASV--  173 (325)
Q Consensus       102 GlA~~G--~~p~v~~~~~~f---~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tHs~-~~~a~~~~i--  173 (325)
                      |-|..-  ...+++-++.+|   .+..+||...+ +..+|    .....+++..+.|. -|.|+.||. .++.++...  
T Consensus       645 GYs~~~p~~lvlWEAQFGDFaNgAQvviDQfisS-ge~KW----~r~sgLv~lLPHgy-EGQGPEHSSaRlER~LQLcaE  718 (906)
T COG0567         645 GYSLANPKTLVLWEAQFGDFANGAQVVIDQFISS-GEQKW----GRMSGLVMLLPHGY-EGQGPEHSSARLERFLQLCAE  718 (906)
T ss_pred             hhhhcCCchhhhhhhhhcccccCCeeeecccccc-HHHHH----HHhcCceEEccCCC-CCCCCcCccchhHHHHHhhHH
Confidence            999885  446666666766   45888998653 44455    35667777777654 567999964 667766554  


Q ss_pred             CCcEEEeeCCHHHHHHHHHHhH-h-CCCcEEEEeCccccCcccCccc--cccCCCccccCCceEEeeeCCcEEEEEechh
Q 020510          174 PGLKVLSPYSSEDARGLLKAAI-R-DPDPVVFLENELLYGESFPVSA--EVLDSSFCLPIGKAKIEREGKDVTITAFSKI  249 (325)
Q Consensus       174 P~~~V~~P~d~~e~~~~l~~a~-~-~~~Pv~ir~~~~l~~~~~p~~~--~~~~~~~~~~~gk~~vl~~G~dv~Iia~G~~  249 (325)
                      -||+|..|+++.+.+.+++.-+ + ...|.+|..++.+.+.+...+.  ++.+..+...+.........-+.+++++|.+
T Consensus       719 ~NmqV~~pstpaq~fHlLRrq~~r~~rkPLiimtPKslLR~~~a~S~~~el~~~~F~~vl~d~~~~~~~v~rvvlcSGKv  798 (906)
T COG0567         719 NNMQVVVPSTPAQYFHLLRRQALRDFRKPLIVMTPKSLLRHKLAVSSLEELTEGTFQPVLEDIDELDPKVKRVVLCSGKV  798 (906)
T ss_pred             hCCEEEecCcHHHHHHHHHHHHhhcccCceEecChhhhhhccccCCchhhhchhhhhhhhccccccccceeeEEeeccch
Confidence            4999999999999999997444 3 3689999888776553221111  1111111101111100111135578888988


Q ss_pred             HHHHHHHHHHHHhcC-CcEEEEEeeeccCCCHHHHHHHHhCCC---eEEEEecCCCCCCHHHHHHHH
Q 020510          250 VGLSLKAAEILAKEG-ISAEVINLRSIRPLDRSTINASVRKTN---RLVTVEEGFPQHGVGAEIWCA  312 (325)
Q Consensus       250 ~~~a~~Aa~~L~~~G-i~~~Vi~~~~l~P~d~~~l~~~~~~~~---~vvvvEe~~~~GGlg~~v~~~  312 (325)
                      .....+..   ++.| .++-++.+..|+||+.+.+.+.++++-   .++.+-|...+-|-...+...
T Consensus       799 yydl~~~r---~~~g~~dvaiiRiEqLyPfP~~~l~~~l~~y~~~~e~vW~QEEp~N~Gaw~~~~~~  862 (906)
T COG0567         799 YYDLLEQR---EKDGRDDVAIVRIEQLYPFPAKALAALLAKYPNVKEFVWCQEEPKNQGAWYYIQPH  862 (906)
T ss_pred             HHHHHHHH---hhcCCcceeEEeeecccCchHHHHHHHHHhccccccccccccCCCccccHHHHHHH
Confidence            88766654   3344 489999999999999999999999873   355555555555544444433

>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]

Probab=98.55  E-value=7.4e-07  Score=87.84  Aligned_cols=267  Identities=19%  Similarity=0.232  Sum_probs=176.7

Q ss_pred             cccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchh-------------HHHHh-CCCc---eeechhhHHHH
Q 020510           34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKG-------------LLEKY-GPER---VLDTPITEAGF   96 (325)
Q Consensus        34 ~~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~-------------~~~~~-gp~R---~i~~GIaE~~~   96 (325)
                      +.++.+..|=+-++..++....+|-+-++|+++  |+|.-.+.             |-.-- +...   +-|...+|.+.
T Consensus       561 G~kiDWaTAEAlA~GSll~qG~nVRiSGqDVGR--GTFshRHAM~VdQ~Td~~~IPLN~m~~~qkg~LEvans~LSEEAv  638 (913)
T KOG0451|consen  561 GVKIDWATAEALAIGSLLYQGHNVRISGQDVGR--GTFSHRHAMLVDQQTDEMFIPLNSMEGGQKGKLEVANSILSEEAV  638 (913)
T ss_pred             CCccchHHHHHHHHHHHHhccCceeeeccccCc--ccccccceeeeeccccceeeeccccCCCcCCeeEeccccccHhhh
Confidence            357788888888999999999999999999986  55532111             10000 1122   33567899999


Q ss_pred             HHHHHHHhccC--CeeEEecccccHHH---HHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCcchH-HHHHH
Q 020510           97 TGIGVGAAYYG--LKPVVEFMTFNFSM---QAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHC-YAAWY  170 (325)
Q Consensus        97 vg~A~GlA~~G--~~p~v~~~~~~f~~---ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tHs~~-~~a~~  170 (325)
                      +|+-.|||...  ..++++.++.+|.+   -.+|.+.. -+..+|+.    ...+++..+.|+. |-|+.||.| +|.++
T Consensus       639 LGFEyGmsienP~~L~iWEAQFGDFfNGAQIIiDTFi~-sgE~KWl~----ssglvmLLPHGyD-GAgpeHSSCRiERFL  712 (913)
T KOG0451|consen  639 LGFEYGMSIENPNNLIIWEAQFGDFFNGAQIIIDTFIV-SGETKWLE----SSGLVMLLPHGYD-GAGPEHSSCRIERFL  712 (913)
T ss_pred             hhhhcccccCCcccceeehhhhcccccCceEEEeeeec-ccchhhhh----hCCeEEEccCCcC-CCCCccchhhHHHHH
Confidence            99999999995  67899988887754   33444433 34556763    4567777776653 457889764 45555


Q ss_pred             hc-----------CCCcEEEeeCCHHHHHHHHHHh-Hh-CCCcEEEEeCccccCcccCcc--cc-ccCCCccccCCceEE
Q 020510          171 AS-----------VPGLKVLSPYSSEDARGLLKAA-IR-DPDPVVFLENELLYGESFPVS--AE-VLDSSFCLPIGKAKI  234 (325)
Q Consensus       171 ~~-----------iP~~~V~~P~d~~e~~~~l~~a-~~-~~~Pv~ir~~~~l~~~~~p~~--~~-~~~~~~~~~~gk~~v  234 (325)
                      .-           --||.|+-|.+|.+++.+++.- .+ ...|.++..++.+.+-+-...  .+ -|...|.-.+|.-..
T Consensus       713 QlCDS~E~~vDGd~VNm~vvnPTTpAQYfHlLRRQ~vrNfRKPLiVv~PK~LLRlPaA~ST~~ef~PGTtf~nVigd~~~  792 (913)
T KOG0451|consen  713 QLCDSKETSVDGDSVNMHVVNPTTPAQYFHLLRRQLVRNFRKPLIVVAPKTLLRLPAATSTHEEFQPGTTFHNVIGDTIA  792 (913)
T ss_pred             HHhccccccCCCcceeEEEeCCCCHHHHHHHHHHHHHHhccCceEEechHHHhhCcchhhhHhhcCCCcccccccccccc
Confidence            32           2489999999999999999743 33 578999987776543211100  00 012222222332211


Q ss_pred             eeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCCe----EEEEecCCCCCCHHHHHH
Q 020510          235 EREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNR----LVTVEEGFPQHGVGAEIW  310 (325)
Q Consensus       235 l~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~----vvvvEe~~~~GGlg~~v~  310 (325)
                      -.+.-+-+|+++|.-.....++.+.+..+. .+.++.+.+|-|||.+.|...++|++.    |+.=||+. +-|-.+.|.
T Consensus       793 ~p~kvkkvifcSGKH~y~l~k~Re~rgakd-~~AI~RvE~LCPFPi~~LQa~l~kY~~vqdfvWSQEEpr-NmGaWsFVr  870 (913)
T KOG0451|consen  793 KPEKVKKVIFCSGKHYYTLAKEREKRGAKD-TVAILRVESLCPFPIQELQAQLAKYGNVQDFVWSQEEPR-NMGAWSFVR  870 (913)
T ss_pred             ChhHheEEEEecCcchhhHHHHHHhccccc-ceeeEehhhcCCCchHHHHHHHHhcCChhhhcccccccc-cCCcceeec
Confidence            112235688899988887777766654332 489999999999999999999998863    56677766 555555554

>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains

Probab=98.53  E-value=5.1e-07  Score=81.94  Aligned_cols=111  Identities=19%  Similarity=0.143  Sum_probs=74.6

Q ss_pred             eeechhhHHHHHHHHHHHhccCCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC--CCCCCCCCCc-
Q 020510           86 VLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN--GAAAGVGAQH-  162 (325)
Q Consensus        86 ~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~--G~~~g~G~tH-  162 (325)
                      .+....+|..+++++.|+|.+|.|.++.|. +..+..+.|.|.. ++.        ..+|++++...  |...| +++| 
T Consensus        38 ~~~~~E~E~~A~~~~~GAs~aG~ra~t~ts-~~Gl~lm~e~l~~-a~~--------~~~P~V~~~~~R~g~~~g-~~~~~  106 (230)
T PF01855_consen   38 KVVQAESEHAAMEAAIGASAAGARAMTATS-GPGLNLMAEPLYW-AAG--------TELPIVIVVVQRAGPSPG-LSTQP  106 (230)
T ss_dssp             EEEE-SSHHHHHHHHHHHHHTT--EEEEEE-CCHHHHHCCCHHH-HHH--------TT--EEEEEEEB---SSS-B--SB
T ss_pred             EEEEecchHHHHHHHHHHHhcCCceEEeec-CCcccccHhHHHH-HHH--------cCCCEEEEEEECCCCCCC-CcCcC
Confidence            455579999999999999999999999887 6678888898865 443        57898887642  33222 2333 


Q ss_pred             chHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEeCcc
Q 020510          163 SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENEL  208 (325)
Q Consensus       163 s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~ir~~~~  208 (325)
                      .|.+.-..+ .-++.|+.|+|++|+.++...|++    ...||+++.+..
T Consensus       107 ~q~D~~~~~-d~~~~vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~  155 (230)
T PF01855_consen  107 EQDDLMAAR-DSGWIVLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLFDGF  155 (230)
T ss_dssp             -SHHHHHTT-TSS-EEEE--SHHHHHHHHHHHHHHHHHHTSEEEEEEECC
T ss_pred             ChhHHHHHH-hcCeEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechh
Confidence            344433333 568889999999999999998887    478999986543

This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....

>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria

Probab=97.75  E-value=0.0017  Score=56.08  Aligned_cols=151  Identities=11%  Similarity=0.130  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHhcCC-cEEEEecCCCCccCccccchhHHHHh-------------CCCceeechhhHHHHHHHHHHHhcc
Q 020510           41 EALNSALDEEMSADP-KVFLMGEEVGEYQGAYKISKGLLEKY-------------GPERVLDTPITEAGFTGIGVGAAYY  106 (325)
Q Consensus        41 ~a~~~~L~~l~~~d~-~iv~l~~D~~~~~g~~~~~~~~~~~~-------------gp~R~i~~GIaE~~~vg~A~GlA~~  106 (325)
                      .++++-|.++++.|+ +.-+.++|...|.....+.+...+++             .+++-+..-.+|....|...|..+.
T Consensus         2 ~~lg~~l~dv~~~N~~nfRvf~PDEt~SNrL~~v~e~t~r~w~~~~~~~~~~~~~~~~G~V~e~LSEh~c~G~leGY~Lt   81 (179)
T PF03894_consen    2 RVLGKYLRDVIKLNPRNFRVFGPDETASNRLNAVFEVTNRQWMARILPPDDDEHLAPGGRVMEVLSEHQCQGWLEGYLLT   81 (179)
T ss_dssp             HHHHHHHHHHHHHSTTTEEEEESS-TTTTT-GGGGGT--EE--S----TTT-TTEESS-SEEE-S-HHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHhCCCcceeECCCcchhhchHHHHHhcccccccccCCCcchhhcccCCeeeeecCHHHHHHHHHHHHhc
Confidence            467788888888765 68899999987765433322211111             0223344459999999999999999


Q ss_pred             CCeeEEecccccH--HHHHHHHHHHH---HhhccccCCCCccCC---EEEEeCCCCC-CCCCCCcch-HH-HHHHhcCC-
Q 020510          107 GLKPVVEFMTFNF--SMQAIDHIINS---AAKSNYMSSGQISVP---IVFRGPNGAA-AGVGAQHSH-CY-AAWYASVP-  174 (325)
Q Consensus       107 G~~p~v~~~~~~f--~~ra~dqi~~~---~a~~~~~~~~~~~~p---vv~~~~~G~~-~g~G~tHs~-~~-~a~~~~iP-  174 (325)
                      |-+-++.+|-+|.  +.-++.|-.-.   .....|+    .+.|   +++. +..-- ..+|-||+. .+ +.++...| 
T Consensus        82 Grhglf~sYEAF~~ivdsM~~Qh~Kwl~~~~~~~wR----~~~~SlN~l~T-S~~wrQdhNG~SHQdPgfi~~~~~k~~~  156 (179)
T PF03894_consen   82 GRHGLFASYEAFAHIVDSMLNQHAKWLRHARELPWR----APIPSLNYLLT-SHVWRQDHNGFSHQDPGFIDHVLNKKPD  156 (179)
T ss_dssp             T-EEEEEEEGGGGGGGHHHHHHHHHHHHHHHH-TTS-------B-EEEEEE-S-CCG-TTT-GGG---THHHHHHCC--T
T ss_pred             CCcccccccchhHHHHHHHHHHHHHHHHHHHhCcCC----CCCcceeEEee-ccceecCCCCcccCCChHHHHHHhcCcc
Confidence            9999999988875  22223332111   1222343    3444   3332 22222 348899933 22 36666655 


Q ss_pred             CcEEEeeCCHHHHHHHHHHhHh
Q 020510          175 GLKVLSPYSSEDARGLLKAAIR  196 (325)
Q Consensus       175 ~~~V~~P~d~~e~~~~l~~a~~  196 (325)
                      -+.||.|.|..-+..+++.+++
T Consensus       157 ~~RvylPpDANtlLav~~~clr  178 (179)
T PF03894_consen  157 VVRVYLPPDANTLLAVMDHCLR  178 (179)
T ss_dssp             -EEEEE-SSHHHHHHHHHHHHH
T ss_pred             cceeecCCcHhHHHHHHHHHhc
Confidence            6789999999999999998876

PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.

>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins

Probab=97.62  E-value=0.0051  Score=52.16  Aligned_cols=110  Identities=17%  Similarity=0.157  Sum_probs=75.4

Q ss_pred             CCceeechhhHHHHHHHHHHHhccCCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCC--C
Q 020510           83 PERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVG--A  160 (325)
Q Consensus        83 p~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G--~  160 (325)
                      .-++|.+- .|++++.+|.|.++.|.++.+.+..+ .+..+.+.+.+...         ...|++++..+......+  .
T Consensus        41 ~i~~i~~~-~E~~A~~~A~g~~r~~~~v~~~~~gp-G~~n~~~~l~~a~~---------~~~P~v~i~g~~~~~~~~~~~  109 (160)
T cd07034          41 GGVVVQAE-SEHAAAEAAIGASAAGARAMTATSGP-GLNLMAEALYLAAG---------AELPLVIVVAQRPGPSTGLPK  109 (160)
T ss_pred             CcEEEEeC-CHHHHHHHHHHHHhhCCcEEEeeCcc-hHHHHHHHHHHHHh---------CCCCEEEEEeeCCCCCCCCCC
Confidence            35788875 99999999999999988865666644 56668888765322         369988876532222222  1


Q ss_pred             CcchHHH--HHHhcCCCcEEEeeCCHHHHHHHHHHhHhC----CCcEEEEe
Q 020510          161 QHSHCYA--AWYASVPGLKVLSPYSSEDARGLLKAAIRD----PDPVVFLE  205 (325)
Q Consensus       161 tHs~~~~--a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~----~~Pv~ir~  205 (325)
                      .+++...  .+++.  -..++.+.+++|+..+++.|++.    ++||+++.
T Consensus       110 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~a~~~~~Pv~l~~  158 (160)
T cd07034         110 PDQSDLMAARYGGH--PWPVLAPSSVQEAFDLALEAFELAEKYRLPVIVLS  158 (160)
T ss_pred             cCcHHHHHHHhCCC--CEEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence            1224333  34433  56788899999999999888872    57999874

Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th

>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins

Probab=97.20  E-value=0.0054  Score=51.71  Aligned_cols=136  Identities=18%  Similarity=0.124  Sum_probs=83.6

Q ss_pred             cCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCC-eeEEecccccHHHHHHHHHHHHH
Q 020510           53 ADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGL-KPVVEFMTFNFSMQAIDHIINSA  131 (325)
Q Consensus        53 ~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~-~p~v~~~~~~f~~ra~dqi~~~~  131 (325)
                      .+-+.++..++..    ...+.+.+. +- .=|++.+ ..|.+++.+|.|.++.+. .+++.+.....+..+...|.+..
T Consensus        10 ~Gv~~vfg~pg~~----~~~l~~~~~-~~-~~~~i~~-~~E~~A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l~~A~   82 (155)
T cd07035          10 EGVDHVFGVPGGA----ILPLLDALA-RS-GIRYILV-RHEQGAVGMADGYARATGKPGVVLVTSGPGLTNAVTGLANAY   82 (155)
T ss_pred             cCCCEEEECCCCc----hHHHHHHhc-cC-CCEEEEe-CCHHHHHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHHHHHH
Confidence            3556666665422    112223333 11 2466665 799999999999999954 44444443455666777776532


Q ss_pred             hhccccCCCCccCCEEEEeCCCCCCCCC-CCcchHH-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHhC-----CCcEEEE
Q 020510          132 AKSNYMSSGQISVPIVFRGPNGAAAGVG-AQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFL  204 (325)
Q Consensus       132 a~~~~~~~~~~~~pvv~~~~~G~~~g~G-~tHs~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~ir  204 (325)
                      .         .+.|++++..+-.....+ .+|+..+ ..+++.+-.. .+...+++++...+..|++.     ++||||.
T Consensus        83 ~---------~~~Pll~i~~~~~~~~~~~~~~q~~d~~~~~~~~~~~-~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~  152 (155)
T cd07035          83 L---------DSIPLLVITGQRPTAGEGRGAFQEIDQVALFRPITKW-AYRVTSPEEIPEALRRAFRIALSGRPGPVALD  152 (155)
T ss_pred             h---------hCCCEEEEeCCCccccccCCcccccCHHHHHHHHhce-EEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEE
Confidence            2         589998886542222222 2232223 3677777543 67778899999988888872     5799986


Q ss_pred             e
Q 020510          205 E  205 (325)
Q Consensus       205 ~  205 (325)
                      .
T Consensus       153 i  153 (155)
T cd07035         153 L  153 (155)
T ss_pred             e
Confidence            4

Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio

>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor

Probab=96.74  E-value=0.036  Score=47.75  Aligned_cols=153  Identities=21%  Similarity=0.153  Sum_probs=87.9

Q ss_pred             cHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEecccc
Q 020510           38 MVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTF  117 (325)
Q Consensus        38 s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~~~  117 (325)
                      +..+++.+.|.+   .+-+.|+--++..    ...+.+.+.+.- -=|++.+ ..|++++.+|.|.|+.+-+|-+++..+
T Consensus         2 t~~~~l~~~L~~---~Gv~~vfgvpG~~----~~~l~~al~~~~-~i~~i~~-~~E~~A~~~A~g~ar~~g~~~v~~~~~   72 (172)
T PF02776_consen    2 TGAEALAEALKA---NGVTHVFGVPGSG----NLPLLDALEKSP-GIRFIPV-RHEQGAAFMADGYARATGRPGVVIVTS   72 (172)
T ss_dssp             EHHHHHHHHHHH---TT-SEEEEE--GG----GHHHHHHHHHTT-TSEEEE--SSHHHHHHHHHHHHHHHSSEEEEEEET
T ss_pred             cHHHHHHHHHHH---CCCeEEEEEeChh----HhHHHHHhhhhc-ceeeecc-cCcchhHHHHHHHHHhhccceEEEeec
Confidence            455666666654   2444455444321    223334555443 2478774 999999999999998865554443323


Q ss_pred             -cHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC-CCC-CCCCCCcc-hHHHHHHhcCCCcEEEeeCCHHHHHHHHHH
Q 020510          118 -NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAA-AGVGAQHS-HCYAAWYASVPGLKVLSPYSSEDARGLLKA  193 (325)
Q Consensus       118 -~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~-~g~G~tHs-~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~  193 (325)
                       ..+.-+..-+.+  ++.       .+.|++++..+ +.. .+.+..|. .....+++.+-. ..+.+.++.++...++.
T Consensus        73 GpG~~n~~~~l~~--A~~-------~~~Pvl~i~g~~~~~~~~~~~~q~~~d~~~~~~~~~k-~~~~v~~~~~~~~~~~~  142 (172)
T PF02776_consen   73 GPGATNALTGLAN--AYA-------DRIPVLVITGQRPSAGEGRGAFQQEIDQQSLFRPVTK-WSYRVTSPDDLPEALDR  142 (172)
T ss_dssp             THHHHTTHHHHHH--HHH-------TT-EEEEEEEESSGGGTTTTSTTSSTHHHHHHGGGSS-EEEEECSGGGHHHHHHH
T ss_pred             ccchHHHHHHHhh--ccc-------ceeeEEEEecccchhhhcccccccchhhcchhccccc-hhcccCCHHHHHHHHHH
Confidence             233333343433  332       57898887643 222 23455552 233488888754 46777778777777776


Q ss_pred             hHh-----CCCcEEEEeCccc
Q 020510          194 AIR-----DPDPVVFLENELL  209 (325)
Q Consensus       194 a~~-----~~~Pv~ir~~~~l  209 (325)
                      |++     .++|++|..+..+
T Consensus       143 A~~~a~~~~~gPv~l~ip~dv  163 (172)
T PF02776_consen  143 AFRAATSGRPGPVYLEIPQDV  163 (172)
T ss_dssp             HHHHHHHCSTSEEEEEEEHHH
T ss_pred             HHHHhccCCCccEEEEcChhH
Confidence            665     4789999876554

It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....

>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase

Probab=96.26  E-value=0.047  Score=52.97  Aligned_cols=124  Identities=14%  Similarity=0.194  Sum_probs=77.2

Q ss_pred             HHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeeEEecccccHHHHHHHHHHHHHh-hccccCCCCccCCEEEEeC-CC
Q 020510           77 LLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAA-KSNYMSSGQISVPIVFRGP-NG  153 (325)
Q Consensus        77 ~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~~~~~~f~~ra~dqi~~~~a-~~~~~~~~~~~~pvv~~~~-~G  153 (325)
                      +.++..+.|+|-+ -+|..++++|+|+.+. |.+|.+.++.|.+ .-+...+. +++ ..      .-++|+++... .|
T Consensus        20 ~~~~~~~~~~i~~-~~E~~av~iaaG~~latG~~~~v~mQnSGl-Gn~vN~l~-SL~~~~------~y~iP~l~~i~~RG   90 (361)
T TIGR03297        20 ITDNNRDLRHVIA-ANEGAAVGLAAGAYLATGKRAAVYMQNSGL-GNAVNPLT-SLADTE------VYDIPLLLIVGWRG   90 (361)
T ss_pred             HHhcCCCceEEec-CCchHHHHHHHHHHHhcCCccEEEEecCch-hhhhhHHH-hhcccc------ccCcCeeEEEecCC
Confidence            4434523466664 6899999999999999 9999999997764 33555543 231 01      13688777655 36


Q ss_pred             CCC-CCCCCcc-h-HH-HHHHhcCCCcEEEe-eCCHHHHHHHHHH----hHhCCCcEEEEeCcccc
Q 020510          154 AAA-GVGAQHS-H-CY-AAWYASVPGLKVLS-PYSSEDARGLLKA----AIRDPDPVVFLENELLY  210 (325)
Q Consensus       154 ~~~-g~G~tHs-~-~~-~a~~~~iP~~~V~~-P~d~~e~~~~l~~----a~~~~~Pv~ir~~~~l~  210 (325)
                      ..+ .+-++|. | .. ..+|..+ ++..+. |.+.+|....+..    +++.+.|+.+...+..+
T Consensus        91 ~~g~~depqh~~~G~~t~~lL~~~-~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~p~a~l~~~~~~  155 (361)
T TIGR03297        91 EPGVHDEPQHVKQGRITLSLLDAL-EIPWEVLSTDNDEALAQIERALAHALATSRPYALVVRKGTF  155 (361)
T ss_pred             CCCCCCCchhhHHhHHHHHHHHHc-CCCEEECCCChHHHHHHHHHHHHHHHHHCCCEEEEEccccc
Confidence            544 3567772 2 22 4777764 333333 4566666555554    44568899998766543

This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A

>PRK07092 benzoylformate decarboxylase; Reviewed

Probab=96.09  E-value=0.59  Score=47.55  Aligned_cols=151  Identities=16%  Similarity=0.092  Sum_probs=86.5

Q ss_pred             cccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCC--ceeechhhHHHHHHHHHHHhccCCeeEEe
Q 020510           36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPE--RVLDTPITEAGFTGIGVGAAYYGLKPVVE  113 (325)
Q Consensus        36 ~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~--R~i~~GIaE~~~vg~A~GlA~~G~~p~v~  113 (325)
                      .++..+++.+.|.+   .+-+.++..+...    .    ..|.+.+ .+  ||+.+ -.|++++.+|.|.|+..-+|-++
T Consensus        11 ~~~~a~~l~~~L~~---~GV~~vFgiPG~~----~----~~l~dal-~~~i~~i~~-~hE~~A~~~Adgyar~tg~~~v~   77 (530)
T PRK07092         11 MTTVRDATIDLLRR---FGITTVFGNPGST----E----LPFLRDF-PDDFRYVLG-LQEAVVVGMADGYAQATGNAAFV   77 (530)
T ss_pred             cCcHHHHHHHHHHH---cCCCEEEeCCCCc----c----hHHHHHH-hhcCCEEEE-ccHHHHHHHHHHHHHHhCCceEE
Confidence            34555666666554   3445555443111    1    2344444 22  77764 89999999999999874444443


Q ss_pred             -cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCCCcchHH-HHHHhcCCCcEEEeeCCHHHHHH
Q 020510          114 -FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQHSHCY-AAWYASVPGLKVLSPYSSEDARG  189 (325)
Q Consensus       114 -~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~tHs~~~-~a~~~~iP~~~V~~P~d~~e~~~  189 (325)
                       +.....+.-++--|.+  |+       ..+.||+++.......  +.+..++..+ ..+++.+-..... ..+++++..
T Consensus        78 ~vt~gpG~~N~~~gia~--A~-------~~~~Pvl~i~g~~~~~~~~~~~~~~~~d~~~l~~~~tk~~~~-v~~~~~~~~  147 (530)
T PRK07092         78 NLHSAAGVGNAMGNLFT--AF-------KNHTPLVITAGQQARSILPFEPFLAAVQAAELPKPYVKWSIE-PARAEDVPA  147 (530)
T ss_pred             EeccCchHHHHHHHHHH--Hh-------hcCCCEEEEecCCcccccCccchhcccCHHHhhcccccceee-cCCHHHHHH
Confidence             2222333344444543  22       2589998876432222  2333221123 4788888664443 477888887


Q ss_pred             HHHHhHh----C-CCcEEEEeCccc
Q 020510          190 LLKAAIR----D-PDPVVFLENELL  209 (325)
Q Consensus       190 ~l~~a~~----~-~~Pv~ir~~~~l  209 (325)
                      .++.|++    . .+||||-.+..+
T Consensus       148 ~i~~A~~~A~~~~~GPv~l~iP~d~  172 (530)
T PRK07092        148 AIARAYHIAMQPPRGPVFVSIPYDD  172 (530)
T ss_pred             HHHHHHHHHhcCCCCcEEEEccHHH
Confidence            7777776    2 479999876553

>PRK08322 acetolactate synthase; Reviewed

Probab=96.08  E-value=0.4  Score=48.87  Aligned_cols=114  Identities=14%  Similarity=0.058  Sum_probs=73.1

Q ss_pred             ceeechhhHHHHHHHHHHHhcc-CCeeEEe-cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCc
Q 020510           85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQH  162 (325)
Q Consensus        85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~-~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tH  162 (325)
                      |++.+ ..|+++..+|.|.|+. |...++. +..+. +.-++--+.+  |+       ..++|++++..+-.....+..+
T Consensus        40 ~~i~~-~hE~~A~~~A~gyar~tg~~gv~~~t~GpG-~~N~~~~i~~--A~-------~~~~Pll~i~g~~~~~~~~~~~  108 (547)
T PRK08322         40 KLILT-RHEQGAAFMAATYGRLTGKAGVCLSTLGPG-ATNLVTGVAY--AQ-------LGGMPMVAITGQKPIKRSKQGS  108 (547)
T ss_pred             cEEEe-ccHHHHHHHHHHHHHhhCCCEEEEECCCcc-HhHHHHHHHH--Hh-------hcCCCEEEEeccccccccCCCc
Confidence            67765 8999999999999988 5443333 43343 3434454543  32       2689999886432222222222


Q ss_pred             chH--HHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhC-----CCcEEEEeCcccc
Q 020510          163 SHC--YAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELLY  210 (325)
Q Consensus       163 s~~--~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~ir~~~~l~  210 (325)
                      .|.  ..++++.+-. ..+...+++++..+++.|++.     ++|||+-.+..+.
T Consensus       109 ~q~~d~~~~~~~~tk-~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv~  162 (547)
T PRK08322        109 FQIVDVVAMMAPLTK-WTRQIVSPDNIPEVVREAFRLAEEERPGAVHLELPEDIA  162 (547)
T ss_pred             cccccHHHHhhhhee-EEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhhh
Confidence            243  2488888764 466677888888888877772     5899998776543

>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit

Probab=95.83  E-value=0.19  Score=42.86  Aligned_cols=112  Identities=21%  Similarity=0.262  Sum_probs=67.2

Q ss_pred             ceeechhhHHHHHHHHHHHhccCCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC-CCCCCCCCCcc
Q 020510           85 RVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGVGAQHS  163 (325)
Q Consensus        85 R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~~g~G~tHs  163 (325)
                      |||- .-.|..++++|+|.++.|.+|.+++..+... -+..-+.... +.       ..+|++++..+ |......+.|.
T Consensus        36 ~~i~-~~~ee~aa~~aAg~~~~~~~~~v~~~~sG~g-n~~~~l~~a~-~~-------~~~Pvl~i~g~rg~~~~~~~~q~  105 (157)
T TIGR03845        36 RHIP-LTREEEGVGICAGAYLAGKKPAILMQSSGLG-NSINALASLN-KT-------YGIPLPILASWRGVYKEKIPAQI  105 (157)
T ss_pred             cEEe-cCChHHHHHHHHHHHHhcCCcEEEEeCCcHH-HHHHHHHHHH-Hc-------CCCCEEEEEeccCCCCCCCcccc
Confidence            5543 4688888899999999999999988866543 3555554322 11       57998887643 43221111111


Q ss_pred             --hHH-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEeCcc
Q 020510          164 --HCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENEL  208 (325)
Q Consensus       164 --~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~ir~~~~  208 (325)
                        ... +..|..+ ++......+++++ ..++.|++    .++|+++...+.
T Consensus       106 ~~g~~~~~~l~~~-~i~~~~i~~~e~~-~~i~~A~~~a~~~~gPv~il~~~~  155 (157)
T TIGR03845       106 PMGRATPKLLDTL-GIPYTIPREPEEA-KLIEKAISDAYENSRPVAALLDPK  155 (157)
T ss_pred             chhhhhHHHHHHc-CCCeEEeCCHHHH-HHHHHHHHHHHhCCCCEEEEEeCC
Confidence              111 2333332 3335666778888 77777665    468999976543

This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).

>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase

Probab=95.57  E-value=0.86  Score=46.90  Aligned_cols=113  Identities=13%  Similarity=0.132  Sum_probs=70.3

Q ss_pred             ceeechhhHHHHHHHHHHHhcc-CCeeEE-ecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCC-CC
Q 020510           85 RVLDTPITEAGFTGIGVGAAYY-GLKPVV-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVG-AQ  161 (325)
Q Consensus        85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~v-~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G-~t  161 (325)
                      +||.+ -.|++++.+|.|.|+. |.-.++ .+..+.+ .-++--|.+  |+.       .+.||+++...-.....+ ..
T Consensus        41 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~-~N~~~gla~--A~~-------~~~Pvl~I~g~~~~~~~~~~~  109 (579)
T TIGR03457        41 RFIPV-VHEQGAGHMADGFARVTGRMSMVIGQNGPGV-TNCVTAIAA--AYW-------AHTPVVIVTPEAGTKTIGLGG  109 (579)
T ss_pred             eEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCchH-HHHHHHHHH--Hhh-------cCCCEEEEeCCCccccCCCCC
Confidence            67775 8999999999999977 654444 3444443 334444543  222       589998886432222211 22


Q ss_pred             cchH-H-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEeCcccc
Q 020510          162 HSHC-Y-AAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLY  210 (325)
Q Consensus       162 Hs~~-~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~ir~~~~l~  210 (325)
                      | |. + ..+++.+-. -.....++.++...++.|++    .++||||-.++.+.
T Consensus       110 ~-Q~~d~~~l~~~vtk-~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv~  162 (579)
T TIGR03457       110 F-QEADQLPMFQEFTK-YQGHVRHPSRMAEVLNRCFERAWREMGPAQLNIPRDYF  162 (579)
T ss_pred             C-cccchhhhhhccee-EEEecCCHHHHHHHHHHHHHHHhcCCCCEEEEeCcchh
Confidence            4 32 2 378887754 34445677777777776665    35899998776643

Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.

>PRK08611 pyruvate oxidase; Provisional

Probab=95.55  E-value=1.3  Score=45.57  Aligned_cols=155  Identities=14%  Similarity=0.055  Sum_probs=86.3

Q ss_pred             ccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeeEE-ec
Q 020510           37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVV-EF  114 (325)
Q Consensus        37 ~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~-G~~p~v-~~  114 (325)
                      ++..+++.+.|.+   .+-+.|+..+...    ...+.+.+.+.-..=||+. ...|++++.+|.|.|+. |...++ .+
T Consensus         4 ~~~~~~l~~~L~~---~GV~~vFgipG~~----~~~l~dal~~~~~~i~~i~-~rhE~~A~~mAdgyar~tg~~gv~~~t   75 (576)
T PRK08611          4 IKAGEALVKLLQD---WGIDHVYGIPGDS----IDAVVDALRKEQDKIKFIQ-VRHEEVAALAAAAYAKLTGKIGVCLSI   75 (576)
T ss_pred             CcHHHHHHHHHHH---cCCCEEEecCCcc----hHHHHHHHHhcCCCCeEEE-eCcHHHHHHHHHHHHHHhCCceEEEEC
Confidence            4455555555544   2344444433111    1222344432111136777 48999999999999977 533333 34


Q ss_pred             ccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCCCcchHHHHHHhcCCCcEEEeeCCHHHHHHHHH
Q 020510          115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLK  192 (325)
Q Consensus       115 ~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~  192 (325)
                      ..+. +.-++--+.+  |+.       .++|++++...-...  +.+..|......+++.+--. .+...+++++...+.
T Consensus        76 ~GPG-~~N~l~gla~--A~~-------~~~Pvl~ItG~~~~~~~~~~~~q~~d~~~l~~~itk~-~~~v~~~~~~~~~l~  144 (576)
T PRK08611         76 GGPG-AIHLLNGLYD--AKM-------DHVPVLALAGQVTSDLLGTDFFQEVNLEKMFEDVAVY-NHQIMSAENLPEIVN  144 (576)
T ss_pred             CCCc-HHHHHHHHHH--Hhh-------cCCCEEEEecCCcccccCCCCccccCHHHHhhcccce-eEEeCCHHHHHHHHH
Confidence            4443 3334454543  332       689998886432222  23332211234888887543 445667878877777


Q ss_pred             HhHh----CCCcEEEEeCcccc
Q 020510          193 AAIR----DPDPVVFLENELLY  210 (325)
Q Consensus       193 ~a~~----~~~Pv~ir~~~~l~  210 (325)
                      .|++    .++||||-.+..+.
T Consensus       145 ~A~~~A~~~~GPV~l~iP~Dv~  166 (576)
T PRK08611        145 QAIRTAYEKKGVAVLTIPDDLP  166 (576)
T ss_pred             HHHHHHhhCCCCEEEEeChhhh
Confidence            6665    46899998776543

>PRK08199 thiamine pyrophosphate protein; Validated

Probab=95.52  E-value=2.1  Score=43.76  Aligned_cols=114  Identities=18%  Similarity=0.094  Sum_probs=70.6

Q ss_pred             ceeechhhHHHHHHHHHHHhccCCee-EE-ecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCC--CCCCC
Q 020510           85 RVLDTPITEAGFTGIGVGAAYYGLKP-VV-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGA  160 (325)
Q Consensus        85 R~i~~GIaE~~~vg~A~GlA~~G~~p-~v-~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~G~  160 (325)
                      |++.+ ..|++++.+|.|.|+..-+| ++ .+..+ .+.-++--|.+  |+.       .++||+++......  .+.+.
T Consensus        48 ~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~Gp-G~~N~~~gi~~--A~~-------~~~Pvl~i~g~~~~~~~~~~~  116 (557)
T PRK08199         48 RVIVC-RQEGGAAMMAEAYGKLTGRPGICFVTRGP-GATNASIGVHT--AFQ-------DSTPMILFVGQVARDFREREA  116 (557)
T ss_pred             cEEEe-ccHHHHHHHHHHHHHhcCCCEEEEeCCCc-cHHHHHHHHHH--Hhh-------cCCCEEEEecCCccccCCCCc
Confidence            56665 89999999999999885443 33 24434 34444454543  332       68999988643222  22333


Q ss_pred             CcchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----C-CCcEEEEeCcccc
Q 020510          161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELLY  210 (325)
Q Consensus       161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~-~~Pv~ir~~~~l~  210 (325)
                      .+.....++++.+-.. .+...+++++...++.|++    . ++||||..+..+.
T Consensus       117 ~q~~d~~~l~~~~tk~-~~~v~~~~~~~~~~~~A~~~A~~~~~GPV~l~iP~dl~  170 (557)
T PRK08199        117 FQEIDYRRMFGPMAKW-VAEIDDAARIPELVSRAFHVATSGRPGPVVLALPEDVL  170 (557)
T ss_pred             ccccCHHHhhhhhhce-eeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhHh
Confidence            2211223788877543 3344688888887777776    2 5899998776654

>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX

Probab=95.37  E-value=0.92  Score=38.82  Aligned_cols=110  Identities=15%  Similarity=0.069  Sum_probs=69.5

Q ss_pred             ceeechhhHHHHHHHHHHHhcc-CCeeEEe-cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCC-C
Q 020510           85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGA-Q  161 (325)
Q Consensus        85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~-~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~-t  161 (325)
                      ||+. .-.|+++..+|-|.|+. |...++. +..+ .+.-++--+.+...         .++|++++..+......|. .
T Consensus        40 ~~v~-~rhE~~A~~mA~gyar~tg~~~v~~~t~Gp-G~~n~~~~l~~A~~---------~~~Pvl~I~g~~~~~~~~~~~  108 (164)
T cd07039          40 EFIQ-VRHEEAAAFAASAEAKLTGKLGVCLGSSGP-GAIHLLNGLYDAKR---------DRAPVLAIAGQVPTDELGTDY  108 (164)
T ss_pred             eEEE-eCCHHHHHHHHHHHHHHhCCCEEEEECCCC-cHHHHHHHHHHHHh---------cCCCEEEEecCCcccccCCCC
Confidence            5665 48999999999999988 5433333 3333 34445555544222         5799998865433222221 2


Q ss_pred             cch--HHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEeCc
Q 020510          162 HSH--CYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENE  207 (325)
Q Consensus       162 Hs~--~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~ir~~~  207 (325)
                      + |  ....+++.+-. -...+.++.++...++.|++    .++||||-.+.
T Consensus       109 ~-q~~d~~~~~~~~tk-~~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~  158 (164)
T cd07039         109 F-QEVDLLALFKDVAV-YNETVTSPEQLPELLDRAIRTAIAKRGVAVLILPG  158 (164)
T ss_pred             C-cccCHHHHHHHhhc-EEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeCh
Confidence            3 3  22478888765 45566788888888877776    36899996553

Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ

>PRK08617 acetolactate synthase; Reviewed

Probab=95.26  E-value=1.5  Score=44.90  Aligned_cols=152  Identities=13%  Similarity=0.060  Sum_probs=89.3

Q ss_pred             ccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCe-eE-E
Q 020510           35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLK-PV-V  112 (325)
Q Consensus        35 ~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~-p~-v  112 (325)
                      ++++..+++.+.|.+   .+-+.|+..+...    ...+.+.+.+. + =|+|.+ ..|+++..+|.|.|+..-+ .+ +
T Consensus         3 ~~~~~~~~l~~~L~~---~GV~~vFg~pG~~----~~~l~~al~~~-~-i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~   72 (552)
T PRK08617          3 KKKYGADLVVDSLIN---QGVKYVFGIPGAK----IDRVFDALEDS-G-PELIVT-RHEQNAAFMAAAIGRLTGKPGVVL   72 (552)
T ss_pred             ccccHHHHHHHHHHH---cCCCEEEeCCCcc----HHHHHHHHhhC-C-CCEEEe-ccHHHHHHHHHhHhhhcCCCEEEE
Confidence            445566666666654   3455555544211    12233444332 1 367775 8999999999999988443 33 3


Q ss_pred             ecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCC--CCCCCCcchH-H-HHHHhcCCCcEEEeeCCHHHHH
Q 020510          113 EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGAQHSHC-Y-AAWYASVPGLKVLSPYSSEDAR  188 (325)
Q Consensus       113 ~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~G~tHs~~-~-~a~~~~iP~~~V~~P~d~~e~~  188 (325)
                      .+..+.+++ ++--+.+  |+.       .+.||+++...-..  .+.+. | |. + ..+++.+-- ..+...++.++.
T Consensus        73 vt~GpG~~N-~l~gl~~--A~~-------~~~PvlvisG~~~~~~~~~~~-~-q~~d~~~l~~~~tk-~~~~v~~~~~~~  139 (552)
T PRK08617         73 VTSGPGVSN-LATGLVT--ATA-------EGDPVVAIGGQVKRADRLKRT-H-QSMDNVALFRPITK-YSAEVQDPDNLS  139 (552)
T ss_pred             ECCCCcHhH-hHHHHHH--Hhh-------cCCCEEEEecCCcccccCCCC-c-cccchhhhhhhhcc-eEEEeCCHHHHH
Confidence            344444444 4444543  332       57899887542111  22232 4 32 2 478888754 455567888888


Q ss_pred             HHHHHhHhC-----CCcEEEEeCccc
Q 020510          189 GLLKAAIRD-----PDPVVFLENELL  209 (325)
Q Consensus       189 ~~l~~a~~~-----~~Pv~ir~~~~l  209 (325)
                      ..++.|++.     ++||||-.+..+
T Consensus       140 ~~i~~A~~~a~~~~~GPV~l~iP~dv  165 (552)
T PRK08617        140 EVLANAFRAAESGRPGAAFVSLPQDV  165 (552)
T ss_pred             HHHHHHHHHHccCCCCcEEEeChhhh
Confidence            888877762     479999876554

>PRK07525 sulfoacetaldehyde acetyltransferase; Validated

Probab=95.25  E-value=0.57  Score=48.35  Aligned_cols=114  Identities=12%  Similarity=0.095  Sum_probs=70.3

Q ss_pred             ceeechhhHHHHHHHHHHHhcc-CCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCCC
Q 020510           85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQ  161 (325)
Q Consensus        85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~t  161 (325)
                      |||.+ -.|++++.+|.|.|+. |+..++.+.+...+.-++--|.+  |+       ..+.||+++...-...  +.+ .
T Consensus        45 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gi~~--A~-------~~~~Pvl~I~g~~~~~~~~~~-~  113 (588)
T PRK07525         45 RFIDV-AHEQNAGHMADGYTRVTGRMGMVIGQNGPGITNFVTAVAT--AY-------WAHTPVVLVTPQAGTKTIGQG-G  113 (588)
T ss_pred             CEEEe-cCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHH--Hh-------hcCCCEEEEeCCCCcccCCCC-C
Confidence            66665 8999999999999987 65444433323333434444543  32       2589999886432221  222 2


Q ss_pred             cch-HHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEeCcccc
Q 020510          162 HSH-CYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLY  210 (325)
Q Consensus       162 Hs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~ir~~~~l~  210 (325)
                      ++. ....+++.+-. -.+...+++++...++.|++    .++||||-.++.+.
T Consensus       114 ~q~~d~~~l~~~~tk-~~~~i~~~~~~~~~i~rA~~~A~~~~GPV~i~iP~Dv~  166 (588)
T PRK07525        114 FQEAEQMPMFEDMTK-YQEEVRDPSRMAEVLNRVFDKAKRESGPAQINIPRDYF  166 (588)
T ss_pred             Ccccchhhhhhhhee-EEEECCCHHHHHHHHHHHHHHHhcCCCCEEEEcChhHh
Confidence            312 22378887644 34555677777777776665    46899998776543

>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase)

Probab=95.08  E-value=0.53  Score=39.99  Aligned_cols=144  Identities=15%  Similarity=0.049  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEecccccHH
Q 020510           41 EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFS  120 (325)
Q Consensus        41 ~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~~~~f~  120 (325)
                      +.+.+.|.+.+ . ..+|+.  |.+..    .. .-+.....|.+|+..|--- ..++.|.|++.+-.+|++++. .+..
T Consensus         2 ~~~~~~l~~~l-~-d~~vv~--d~G~~----~~-~~~~~~~~~~~~~~~gsmG-~~lp~AiGa~~a~~~~Vv~i~-GDG~   70 (157)
T cd02001           2 IAAIAEIIEAS-G-DTPIVS--TTGYA----SR-ELYDVQDRDGHFYMLGSMG-LAGSIGLGLALGLSRKVIVVD-GDGS   70 (157)
T ss_pred             HHHHHHHHHhC-C-CCEEEe--CCCHh----HH-HHHHhhcCCCCEEeecchh-hHHHHHHHHHhcCCCcEEEEE-CchH
Confidence            45566676666 3 444443  44421    11 1133334478998632221 122377777765447787765 5432


Q ss_pred             H-HHHHHHHHHHhhccccCCCCccCCEEEEeC-CCCCCCCC--CCcc-h-HHHHHHhcCCCcEEEeeCCHHHHHHHHHHh
Q 020510          121 M-QAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAGVG--AQHS-H-CYAAWYASVPGLKVLSPYSSEDARGLLKAA  194 (325)
Q Consensus       121 ~-ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~~g~G--~tHs-~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a  194 (325)
                      . .....+ ..++..       .++|++++.. ++.++-.+  .++. . ++..+...+ |+.-+...+++|+...++.+
T Consensus        71 f~m~~~el-~t~~~~-------~~~~i~~vV~nN~~~g~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a  141 (157)
T cd02001          71 LLMNPGVL-LTAGEF-------TPLNLILVVLDNRAYGSTGGQPTPSSNVNLEAWAAAC-GYLVLSAPLLGGLGSEFAGL  141 (157)
T ss_pred             HHhcccHH-HHHHHh-------cCCCEEEEEEeCccccccCCcCCCCCCCCHHHHHHHC-CCceEEcCCHHHHHHHHHHH
Confidence            2 222222 222321       2477766542 33221111  1221 2 233555554 55566778999999999999


Q ss_pred             HhCCCcEEEE
Q 020510          195 IRDPDPVVFL  204 (325)
Q Consensus       195 ~~~~~Pv~ir  204 (325)
                      ++.++|++|.
T Consensus       142 ~~~~gp~vi~  151 (157)
T cd02001         142 LATTGPTLLH  151 (157)
T ss_pred             HhCCCCEEEE
Confidence            9988999884

Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.

>TIGR02418 acolac_catab acetolactate synthase, catabolic

Probab=94.94  E-value=0.53  Score=47.95  Aligned_cols=113  Identities=12%  Similarity=0.032  Sum_probs=70.3

Q ss_pred             ceeechhhHHHHHHHHHHHhcc-CCeeE-EecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCC--CCCCC
Q 020510           85 RVLDTPITEAGFTGIGVGAAYY-GLKPV-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGA  160 (325)
Q Consensus        85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~-v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~G~  160 (325)
                      ||+.+ ..|+++..+|-|.|+. |...+ +.+..+..++ ++--+.+  |+.       .+.||+++......  .+.+.
T Consensus        38 ~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n-~l~gl~~--A~~-------~~~Pvl~I~G~~~~~~~~~~~  106 (539)
T TIGR02418        38 ELIVV-RHEQNAAFMAQAVGRITGKPGVALVTSGPGCSN-LVTGLAT--ANS-------EGDPVVAIGGQVKRADLLKLT  106 (539)
T ss_pred             CEEEe-CcHHHHHHHHHHHHHHhCCceEEEECCCCCHhH-HHHHHHH--Hhh-------cCCCEEEEeCCCcccccccCc
Confidence            67776 7999999999999977 54333 3344444433 4455543  332       57899888643222  12233


Q ss_pred             CcchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----C-CCcEEEEeCccc
Q 020510          161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELL  209 (325)
Q Consensus       161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~-~~Pv~ir~~~~l  209 (325)
                      .|.....++++.+-. -.....++.++...++.|++    . ++||||..+..+
T Consensus       107 ~q~~d~~~~~~~~tk-~~~~i~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~dv  159 (539)
T TIGR02418       107 HQSMDNVALFRPITK-YSAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQDV  159 (539)
T ss_pred             ccccchhhhhhccee-eeeecCCHHHHHHHHHHHHHHHhcCCCCCEEEEcChhH
Confidence            221123488888764 34445678888777777765    2 479999877654

Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.

>PRK07586 hypothetical protein; Validated

Probab=94.80  E-value=0.82  Score=46.27  Aligned_cols=201  Identities=17%  Similarity=0.037  Sum_probs=104.4

Q ss_pred             ceeechhhHHHHHHHHHHHhcc-CCeeEEe-cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCC-C
Q 020510           85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGA-Q  161 (325)
Q Consensus        85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~-~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~-t  161 (325)
                      |||.+ -.|+++..+|.|.|+. |...++. +..+. +.-+.--+.+  |+       ..++||+++.........+. .
T Consensus        41 ~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG-~~N~~~gl~~--A~-------~~~~Pvl~i~G~~~~~~~~~~~  109 (514)
T PRK07586         41 RCVLG-LFEGVATGAADGYARMAGKPAATLLHLGPG-LANGLANLHN--AR-------RARTPIVNIVGDHATYHRKYDA  109 (514)
T ss_pred             eEEEe-ccHHHHHHHHHHHHHHHCCCEEEEecccHH-HHHHHHHHHH--HH-------hcCCCEEEEecCCchhccCCCc
Confidence            67775 8999999999999988 5433332 44343 4444444443  32       26899998864322222221 1


Q ss_pred             cch-HHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----C-CCcEEEEeCccccCcccCccccccCCCccccCCc----
Q 020510          162 HSH-CYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELLYGESFPVSAEVLDSSFCLPIGK----  231 (325)
Q Consensus       162 Hs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~-~~Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~~gk----  231 (325)
                      |+. ....+++.+-- ..+...+++++...++.|++    . ++||||-.+..+.....+................    
T Consensus       110 ~q~~d~~~~~~~vtk-~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~v~  188 (514)
T PRK07586        110 PLTSDIEALARPVSG-WVRRSESAADVAADAAAAVAAARGAPGQVATLILPADVAWSEGGPPAPPPPAPAPAAVDPAAVE  188 (514)
T ss_pred             ccccchhhhhccccc-eeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEeccchhccccccccccCCCCCCCCCCHHHHH
Confidence            212 22478877742 34556777877777777766    2 5899998776543221110000000000000000    


Q ss_pred             --eEEeeeC-CcEEEEEechhHHHHHHHHHHHHhc-CCcEEE--EE-----eeeccC-----CCHHHHHHHHhCCCeEEE
Q 020510          232 --AKIEREG-KDVTITAFSKIVGLSLKAAEILAKE-GISAEV--IN-----LRSIRP-----LDRSTINASVRKTNRLVT  295 (325)
Q Consensus       232 --~~vl~~G-~dv~Iia~G~~~~~a~~Aa~~L~~~-Gi~~~V--i~-----~~~l~P-----~d~~~l~~~~~~~~~vvv  295 (325)
                        .+.+.+- +-+.|++.|.....+.++..+|.++ |+-+-.  +.     -..+-|     .-.....+.+++.+.|++
T Consensus       189 ~~~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~l~~pV~t~~~~~~~~~gkg~~~~~~~~~~~~~~~~~~~~aDlvl~  268 (514)
T PRK07586        189 AAAAALRSGEPTVLLLGGRALRERGLAAAARIAAATGARLLAETFPARMERGAGRPAVERLPYFAEQALAQLAGVRHLVL  268 (514)
T ss_pred             HHHHHHHhcCCCEEEeCCcccchhHHHHHHHHHHHHCCCEEecccccccccCCCCCCcccccchHHHHHHHHhcCCEEEE
Confidence              1122232 3466666666556666666667654 665422  10     011111     112233456777777777


Q ss_pred             Ee
Q 020510          296 VE  297 (325)
Q Consensus       296 vE  297 (325)
                      +-
T Consensus       269 vG  270 (514)
T PRK07586        269 VG  270 (514)
T ss_pred             EC
Confidence            65

>PRK12474 hypothetical protein; Provisional

Probab=94.65  E-value=5.4  Score=40.43  Aligned_cols=155  Identities=14%  Similarity=0.076  Sum_probs=87.4

Q ss_pred             ccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeeEEe
Q 020510           35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVVE  113 (325)
Q Consensus        35 ~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~  113 (325)
                      ++++..+.+.+.|.+   .+-+.|+--+  +.  ....+.+.+.+ ...=|||.+ -.|+++..+|-|.|+. |..-++.
T Consensus         3 ~~~~~~~~l~~~L~~---~GV~~vFGvp--G~--~~~~l~dal~~-~~~i~~i~~-rhE~~A~~mAdgYaR~tg~~gv~~   73 (518)
T PRK12474          3 QTMNGADSVVDTLLN---CGVEVCFANP--GT--SEMHFVAALDR-VPRMRPVLC-LFEGVVTGAADGYGRIAGKPAVTL   73 (518)
T ss_pred             cCccHHHHHHHHHHH---CCCCEEEECC--Cc--chHHHHHHhhc-cCCceEEEe-cchHHHHHHHHHHHHHhCCCEEEE
Confidence            455556666666654   3444444332  11  01122223321 101277776 8999999999999987 5444433


Q ss_pred             -cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCC-Ccch-HHHHHHhcCCCcEEEeeCCHHHHHHH
Q 020510          114 -FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGA-QHSH-CYAAWYASVPGLKVLSPYSSEDARGL  190 (325)
Q Consensus       114 -~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~-tHs~-~~~a~~~~iP~~~V~~P~d~~e~~~~  190 (325)
                       +..+. ..-++--+.+  |+.       -++||+++.........+. .|++ ...++++.+-- ..+...+++++..+
T Consensus        74 ~t~GpG-~~N~~~gl~~--A~~-------d~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~vtk-~~~~v~~~~~~~~~  142 (518)
T PRK12474         74 LHLGPG-LANGLANLHN--ARR-------AASPIVNIVGDHAVEHLQYDAPLTSDIDGFARPVSR-WVHRSASAGAVDSD  142 (518)
T ss_pred             Eccchh-HhHhHHHHHH--Hhh-------cCCCEEEEeccCchhhcCCCCccccCHHHhhhcccc-eeeecCCHHHHHHH
Confidence             44343 3334444433  322       5799888754322222121 2212 23478887653 34456889999988


Q ss_pred             HHHhHhC-----CCcEEEEeCccc
Q 020510          191 LKAAIRD-----PDPVVFLENELL  209 (325)
Q Consensus       191 l~~a~~~-----~~Pv~ir~~~~l  209 (325)
                      ++.|++.     .+||||-.++.+
T Consensus       143 i~rA~~~A~~~~~GPV~l~iP~Dv  166 (518)
T PRK12474        143 VARAVQAAQSAPGGIATLIMPADV  166 (518)
T ss_pred             HHHHHHHHhcCCCCcEEEEechhh
Confidence            8888862     489999877664

>PRK08266 hypothetical protein; Provisional

Probab=94.62  E-value=2.7  Score=42.83  Aligned_cols=153  Identities=18%  Similarity=0.094  Sum_probs=87.8

Q ss_pred             ccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeeEE-ec
Q 020510           37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVV-EF  114 (325)
Q Consensus        37 ~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~-G~~p~v-~~  114 (325)
                      ++..+++.+.|.++   +-+.|+..+...    ...+.+.+.+.-..=|++.+ ..|++++.+|.|.|+. |...++ .+
T Consensus         4 ~~~~~~l~~~L~~~---Gv~~vFg~pG~~----~~~l~~al~~~~~~i~~v~~-~hE~~A~~~A~gyar~tg~~~v~~~t   75 (542)
T PRK08266          4 MTGGEAIVAGLVAH---GVDTVFGLPGAQ----LYWLFDALYKAGDRIRVIHT-RHEQAAGYMAFGYARSTGRPGVCSVV   75 (542)
T ss_pred             CcHHHHHHHHHHHc---CCCEEEECCCcc----hHHHHHHHHhcCCCCeEEee-ccHHHHHHHHHHHHHHhCCCeEEEEC
Confidence            45566666666543   445555443211    12233444332111367775 8999999999999987 543333 34


Q ss_pred             ccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCC--CCCC--CCcchH-H-HHHHhcCCCcEEEeeCCHHHHH
Q 020510          115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVG--AQHSHC-Y-AAWYASVPGLKVLSPYSSEDAR  188 (325)
Q Consensus       115 ~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~G--~tHs~~-~-~a~~~~iP~~~V~~P~d~~e~~  188 (325)
                      ..+.+ .-++--+.+  |+       ...+|++++...-..  .+.|  ..| +. + ..+++.+-. ......+++++.
T Consensus        76 ~GpG~-~N~~~gi~~--A~-------~~~~Pvl~i~g~~~~~~~~~~~~~~~-~~~d~~~~~~~~tk-~~~~v~~~~~~~  143 (542)
T PRK08266         76 PGPGV-LNAGAALLT--AY-------GCNSPVLCLTGQIPSALIGKGRGHLH-EMPDQLATLRSFTK-WAERIEHPSEAP  143 (542)
T ss_pred             CCCcH-HHHHHHHHH--HH-------hhCCCEEEEecCCChhhccCCCCcce-ecccHhhHHhhhcc-eEEEeCCHHHHH
Confidence            44444 334455543  33       268999887643222  1222  234 32 3 478888754 355566777877


Q ss_pred             HHHHHhHh-----CCCcEEEEeCccc
Q 020510          189 GLLKAAIR-----DPDPVVFLENELL  209 (325)
Q Consensus       189 ~~l~~a~~-----~~~Pv~ir~~~~l  209 (325)
                      ..++.|++     ..+||++-.+..+
T Consensus       144 ~~l~~A~~~a~~~~~GPV~l~iP~dv  169 (542)
T PRK08266        144 ALVAEAFQQMLSGRPRPVALEMPWDV  169 (542)
T ss_pred             HHHHHHHHHHhhCCCCcEEEEeCHhH
Confidence            77777776     2589999877554

>PRK09124 pyruvate dehydrogenase; Provisional

Probab=94.58  E-value=2.9  Score=42.97  Aligned_cols=112  Identities=13%  Similarity=0.048  Sum_probs=67.5

Q ss_pred             ceeechhhHHHHHHHHHHHhccCCeeEEec--ccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCC
Q 020510           85 RVLDTPITEAGFTGIGVGAAYYGLKPVVEF--MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA  160 (325)
Q Consensus        85 R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~--~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~  160 (325)
                      ||+.+ -.|+++.-+|-|.|+..-+|-+++  ..+. ..-+.--|.+  |+.       ..+||+++..+....  +.|.
T Consensus        43 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG-~~n~~~gi~~--A~~-------~~~Pvl~i~G~~~~~~~~~~~  111 (574)
T PRK09124         43 EWMHT-RHEEVAAFAAGAEAQLTGELAVCAGSCGPG-NLHLINGLFD--CHR-------NHVPVLAIAAHIPSSEIGSGY  111 (574)
T ss_pred             cEEEe-CcHHHHHHHHHHHHHhhCCcEEEEECCCCC-HHHHHHHHHH--Hhh-------cCCCEEEEecCCccccCCCCC
Confidence            56664 799999999999999844554443  3333 3334444433  322       589998886443332  2232


Q ss_pred             Ccch--HHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEeCcccc
Q 020510          161 QHSH--CYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLY  210 (325)
Q Consensus       161 tHs~--~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~ir~~~~l~  210 (325)
                       | |  ....+++.+--. .....+++++...++.|++    .++|||+-.+..+.
T Consensus       112 -~-Q~~d~~~l~~~itk~-~~~v~~~~~~~~~i~~A~~~A~~~~gPV~l~iP~Dv~  164 (574)
T PRK09124        112 -F-QETHPQELFRECSHY-CELVSNPEQLPRVLAIAMRKAILNRGVAVVVLPGDVA  164 (574)
T ss_pred             -c-cccChhhhcccceee-eEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChhhh
Confidence             3 3  224788876432 3335677776666655554    46899998776543

>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=94.57  E-value=2.3  Score=43.71  Aligned_cols=152  Identities=19%  Similarity=0.124  Sum_probs=89.2

Q ss_pred             cHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeeEEe-cc
Q 020510           38 MVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVVE-FM  115 (325)
Q Consensus        38 s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~-~~  115 (325)
                      +..+++.+.|.+   .+-+.|+--+  +.  ....+.+.|.+. + =|||.+ .-||++..+|.|.|+. |+.-+|- +.
T Consensus         3 ~ga~~lv~~L~~---~GV~~VFGiP--G~--~i~~~~dal~~~-~-i~~I~~-RHEq~Aa~mAdgyar~TGkpgV~~~ts   72 (550)
T COG0028           3 TGAEALVEALEA---NGVDTVFGIP--GG--SILPLYDALYDS-G-IRHILV-RHEQGAAFAADGYARATGKPGVCLVTS   72 (550)
T ss_pred             cHHHHHHHHHHH---cCCcEEEeCC--Cc--cHHHHHHHHHhC-C-CcEEEe-ccHHHHHHHHHHHHHHcCCCEEEEECC
Confidence            344555555543   3555555433  11  112233444443 2 377776 8999999999999988 5433333 33


Q ss_pred             cccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCcchHH--HHHHhcCCCcEEEeeCCHHHHHHHHHH
Q 020510          116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCY--AAWYASVPGLKVLSPYSSEDARGLLKA  193 (325)
Q Consensus       116 ~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tHs~~~--~a~~~~iP~~~V~~P~d~~e~~~~l~~  193 (325)
                      .+.. .-+..-|.+  |++       -..|++++...-.+...|....|+.  .++++.+-. ..+...+++|+-.+++.
T Consensus        73 GPGa-tN~~tgla~--A~~-------d~~Pll~itGqv~~~~~g~~afQe~D~~~l~~p~tk-~~~~v~~~~~ip~~i~~  141 (550)
T COG0028          73 GPGA-TNLLTGLAD--AYM-------DSVPLLAITGQVPTSLIGTDAFQEVDQVGLFRPITK-YNFEVRSPEDIPEVVAR  141 (550)
T ss_pred             CCcH-HHHHHHHHH--HHh-------cCCCEEEEeCCccccccCcchhhhcchhhHhhhhhe-eEEEeCCHHHHHHHHHH
Confidence            3333 333343432  332       5789888754322333343322433  378888753 45677788999999998


Q ss_pred             hHhC-----CCcEEEEeCcccc
Q 020510          194 AIRD-----PDPVVFLENELLY  210 (325)
Q Consensus       194 a~~~-----~~Pv~ir~~~~l~  210 (325)
                      |++.     .+||+|-.++...
T Consensus       142 Af~~A~sgrpGpv~i~iP~Dv~  163 (550)
T COG0028         142 AFRIALSGRPGPVVVDLPKDVL  163 (550)
T ss_pred             HHHHHhcCCCceEEEEcChhHh
Confidence            8872     4899998776543

>PRK05858 hypothetical protein; Provisional

Probab=94.55  E-value=0.69  Score=47.20  Aligned_cols=149  Identities=16%  Similarity=0.083  Sum_probs=86.1

Q ss_pred             cHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEE-e-cc
Q 020510           38 MVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVV-E-FM  115 (325)
Q Consensus        38 s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v-~-~~  115 (325)
                      +..+++.+.|.+   .+-+.++..+-..    ...+.+.+. +. .=|||.+ ..|+++..+|.|.|+..-+|-+ . +.
T Consensus         6 ~~~~~l~~~L~~---~GV~~vFg~pG~~----~~~l~dal~-~~-~i~~i~~-rhE~~A~~~AdGyar~tg~~gv~~~t~   75 (542)
T PRK05858          6 HAGRLAARRLKA---HGVDTMFTLSGGH----LFPLYDGAR-EE-GIRLIDV-RHEQTAAFAAEAWAKLTRVPGVAVLTA   75 (542)
T ss_pred             cHHHHHHHHHHH---cCCCEEEeCCCcc----hHHHHHHHH-hc-CCCEEee-ccHHHHHHHHHHHHHhcCCCeEEEEcC
Confidence            344555555543   3455555543111    122333442 23 2477776 8999999999999998444433 2 33


Q ss_pred             cccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCCCcchH-H-HHHHhcCCCcEEEeeCCHHHHHHHH
Q 020510          116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQHSHC-Y-AAWYASVPGLKVLSPYSSEDARGLL  191 (325)
Q Consensus       116 ~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~tHs~~-~-~a~~~~iP~~~V~~P~d~~e~~~~l  191 (325)
                      .+. +.-+.--|.+  |+.       .+.||+++.......  +.|. + |. + .++++.+-. ......++.++...+
T Consensus        76 GpG-~~n~~~~i~~--A~~-------~~~Pvl~i~g~~~~~~~~~~~-~-q~~d~~~l~~~~tk-~~~~v~~~~~~~~~i  142 (542)
T PRK05858         76 GPG-VTNGMSAMAA--AQF-------NQSPLVVLGGRAPALRWGMGS-L-QEIDHVPFVAPVTK-FAATAQSAENAGRLV  142 (542)
T ss_pred             Cch-HHHHHHHHHH--HHh-------cCCCEEEEeCCCCcccCCCCC-C-cccchhhhhhhhhc-eEEEeCCHHHHHHHH
Confidence            343 3334444543  222       589999876432222  2232 3 32 2 378888765 455567788888888


Q ss_pred             HHhHh----C-CCcEEEEeCccc
Q 020510          192 KAAIR----D-PDPVVFLENELL  209 (325)
Q Consensus       192 ~~a~~----~-~~Pv~ir~~~~l  209 (325)
                      +.|++    . ++||||..+..+
T Consensus       143 ~~A~~~A~~~~~GPV~l~iP~dv  165 (542)
T PRK05858        143 DQALQAAVTPHRGPVFVDFPMDH  165 (542)
T ss_pred             HHHHHHHcCCCCCeEEEEcChhh
Confidence            77775    2 579999877654

>PRK07524 hypothetical protein; Provisional

Probab=94.54  E-value=0.86  Score=46.38  Aligned_cols=113  Identities=23%  Similarity=0.150  Sum_probs=73.2

Q ss_pred             ceeechhhHHHHHHHHHHHhccCCee-EE-ecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CC--
Q 020510           85 RVLDTPITEAGFTGIGVGAAYYGLKP-VV-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GV--  158 (325)
Q Consensus        85 R~i~~GIaE~~~vg~A~GlA~~G~~p-~v-~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~--  158 (325)
                      |||.+ -.|++++.+|.|.|+..-+| ++ .+..+. +.-+.--|.+  |+       ..+.||+++...-...  +.  
T Consensus        41 ~~i~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG-~~n~~~gi~~--A~-------~~~~Pvl~i~G~~~~~~~~~~~  109 (535)
T PRK07524         41 RHVTP-RHEQGAGFMADGYARVSGKPGVCFIITGPG-MTNIATAMGQ--AY-------ADSIPMLVISSVNRRASLGKGR  109 (535)
T ss_pred             cEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCcc-HHHHHHHHHH--HH-------hcCCCEEEEeCCCChhhcCCCC
Confidence            67775 89999999999999874443 33 344444 3434455544  32       2589998876432221  21  


Q ss_pred             CCCcchH-H-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHh-----CCCcEEEEeCcccc
Q 020510          159 GAQHSHC-Y-AAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELLY  210 (325)
Q Consensus       159 G~tHs~~-~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~ir~~~~l~  210 (325)
                      +..| +. + ..+++.+-- ..+...+++++...++.|++     .++||||-.++.+.
T Consensus       110 ~~~~-~~~d~~~l~~~~tk-~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv~  166 (535)
T PRK07524        110 GKLH-ELPDQRAMVAGVAA-FSHTLMSAEDLPEVLARAFAVFDSARPRPVHIEIPLDVL  166 (535)
T ss_pred             cccc-ccccHHHHhhhhce-eEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEEeCHhHH
Confidence            2334 42 3 488888753 55677788888888888776     25899998776543

>PRK06965 acetolactate synthase 3 catalytic subunit; Validated

Probab=94.49  E-value=2.3  Score=43.87  Aligned_cols=112  Identities=18%  Similarity=0.073  Sum_probs=69.4

Q ss_pred             ceeechhhHHHHHHHHHHHhcc-CCeeEEe-cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCC-C
Q 020510           85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGA-Q  161 (325)
Q Consensus        85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~-~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~-t  161 (325)
                      |+|.+ -.|++++.+|-|.|+. |...++. +..+. +.-++--+.+  |+       ..++||+++.........|. .
T Consensus        61 ~~i~~-rhE~~A~~~AdgYar~tg~~gv~~~t~GpG-~~N~l~gl~~--A~-------~~~~Pvl~i~G~~~~~~~~~~~  129 (587)
T PRK06965         61 QHVLV-RHEQAAVHAADGYARATGKVGVALVTSGPG-VTNAVTGIAT--AY-------MDSIPMVVISGQVPTAAIGQDA  129 (587)
T ss_pred             eEEEe-CCHHHHHHHHHHHHHHhCCCeEEEECCCcc-HHHHHHHHHH--Hh-------hcCCCEEEEecCCCccccCCCC
Confidence            67776 8999999999999988 5443433 44443 3435454543  33       26899998864322222221 1


Q ss_pred             cchH-H-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----C-CCcEEEEeCccc
Q 020510          162 HSHC-Y-AAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELL  209 (325)
Q Consensus       162 Hs~~-~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~-~~Pv~ir~~~~l  209 (325)
                      + |. + .++++.+-. -.....+++++..+++.|++    . .+||||-.+..+
T Consensus       130 ~-q~~d~~~l~~~itk-~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv  182 (587)
T PRK06965        130 F-QECDTVGITRPIVK-HNFLVKDVRDLAETVKKAFYIARTGRPGPVVVDIPKDV  182 (587)
T ss_pred             c-ccccHHHHhcCCcc-eeEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChhh
Confidence            3 32 2 378888754 24445577777777766665    2 589999877654

>PRK07064 hypothetical protein; Provisional

Probab=94.41  E-value=5.2  Score=40.75  Aligned_cols=112  Identities=17%  Similarity=0.102  Sum_probs=70.9

Q ss_pred             ceeechhhHHHHHHHHHHHhcc-CCeeEE-ecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCC--CCCC-
Q 020510           85 RVLDTPITEAGFTGIGVGAAYY-GLKPVV-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVG-  159 (325)
Q Consensus        85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~v-~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~G-  159 (325)
                      |++.+ ..|+++..+|.|.|+. |...++ .+..+..++ ++--|.+  |+.       .++||+++...-..  .+.+ 
T Consensus        43 ~~i~~-~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N-~~~~i~~--A~~-------~~~Pvl~i~g~~~~~~~~~~~  111 (544)
T PRK07064         43 RFVPA-RGEAGAVNMADAHARVSGGLGVALTSTGTGAGN-AAGALVE--ALT-------AGTPLLHITGQIETPYLDQDL  111 (544)
T ss_pred             cEEee-ccHHHHHHHHHHHHHhcCCCeEEEeCCCCcHHH-HHHHHHH--HHh-------cCCCEEEEeCCCCcccccCCC
Confidence            67765 8999999999999977 544443 355454433 5555544  221       58999887643121  1222 


Q ss_pred             -CCcch--HHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----C-CCcEEEEeCccc
Q 020510          160 -AQHSH--CYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELL  209 (325)
Q Consensus       160 -~tHs~--~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~-~~Pv~ir~~~~l  209 (325)
                       ..| +  ....+++.+-. ..+...+++++..+++.|++    . ++||||-.+..+
T Consensus       112 ~~~~-~~~d~~~~~~~~tk-~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv  167 (544)
T PRK07064        112 GYIH-EAPDQLTMLRAVSK-AAFRVRSAETALATIREAVRVALTAPTGPVSVEIPIDI  167 (544)
T ss_pred             cccc-cccCHHHHhhhhcc-eEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEeCHhH
Confidence             234 4  23488888764 34555678887777777765    2 689999877554

>TIGR02720 pyruv_oxi_spxB pyruvate oxidase

Probab=94.22  E-value=1.6  Score=44.92  Aligned_cols=114  Identities=15%  Similarity=0.026  Sum_probs=67.9

Q ss_pred             ceeechhhHHHHHHHHHHHhcc-CCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCC-CCc
Q 020510           85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVG-AQH  162 (325)
Q Consensus        85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G-~tH  162 (325)
                      |||.+ -.|+++..+|-|.|+. |...++.+.+...+.-+.--+.+  |+.       .++||+++.........+ .++
T Consensus        40 ~~v~~-rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~n~~~~i~~--A~~-------~~~Pvl~I~G~~~~~~~~~~~~  109 (575)
T TIGR02720        40 HYIQV-RHEEVGALAAAADAKLTGKIGVCFGSAGPGATHLLNGLYD--AKE-------DHVPVLALVGQVPTTGMNMDTF  109 (575)
T ss_pred             cEEEe-ccHHHHHHHHHHHHHhhCCceEEEeCCCCcHHHHHHHHHH--Hhh-------cCCCEEEEecCCccccCCCCCc
Confidence            67775 8999999999999977 44434333223344445555544  332       589998886532322222 223


Q ss_pred             chH-H-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEeCcccc
Q 020510          163 SHC-Y-AAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLY  210 (325)
Q Consensus       163 s~~-~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~ir~~~~l~  210 (325)
                       |. + .++++.+-- -.....+++++...++.|++    .++||||-.+..+.
T Consensus       110 -q~id~~~~~~~vtk-~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv~  161 (575)
T TIGR02720       110 -QEMNENPIYADVAV-YNRTAMTAESLPHVIDEAIRRAYAHNGVAVVTIPVDFG  161 (575)
T ss_pred             -ceechhhhhhhcce-EEEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEECcchh
Confidence             33 3 378887643 22344566666655555554    57899998776543

Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.

>PRK06466 acetolactate synthase 3 catalytic subunit; Validated

Probab=94.09  E-value=1.6  Score=44.79  Aligned_cols=113  Identities=19%  Similarity=0.107  Sum_probs=70.5

Q ss_pred             CceeechhhHHHHHHHHHHHhcc-CCeeEEe-cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCC-
Q 020510           84 ERVLDTPITEAGFTGIGVGAAYY-GLKPVVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGA-  160 (325)
Q Consensus        84 ~R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~-~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~-  160 (325)
                      =|||.+ -.|+++..+|-|.|+. |...++. +..+. +.-++--+.+  |+       ..+.||+++.........+. 
T Consensus        43 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~vt~GPG-~~N~l~gl~~--A~-------~~~~Pvl~i~G~~~~~~~~~~  111 (574)
T PRK06466         43 VEHILV-RHEQAATHMADGYARATGKTGVVLVTSGPG-ATNAITGIAT--AY-------MDSIPMVVLSGQVPSTLIGED  111 (574)
T ss_pred             ceEEEe-CcHHHHHHHHHHHHHHhCCCEEEEECCCcc-HHHHHHHHHH--HH-------hcCCCEEEEecCCCccccCCC
Confidence            366665 8999999999999977 4333333 44343 3334444543  33       26899988864322222221 


Q ss_pred             CcchH--HHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhC-----CCcEEEEeCccc
Q 020510          161 QHSHC--YAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL  209 (325)
Q Consensus       161 tHs~~--~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~ir~~~~l  209 (325)
                      .+ |.  ...+++.+-- -.+...++.++..+++.|++.     ++|||+..+..+
T Consensus       112 ~~-q~~d~~~l~~~itk-~s~~v~~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~Dv  165 (574)
T PRK06466        112 AF-QETDMVGISRPIVK-HSFMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIPKDM  165 (574)
T ss_pred             cc-cccchhhhhhccce-eEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhH
Confidence            23 43  2378888765 345566788888877777763     589999877653

>PRK06457 pyruvate dehydrogenase; Provisional

Probab=94.08  E-value=0.89  Score=46.49  Aligned_cols=114  Identities=14%  Similarity=0.045  Sum_probs=69.7

Q ss_pred             ceeechhhHHHHHHHHHHHhccCCeeEEe--cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCC
Q 020510           85 RVLDTPITEAGFTGIGVGAAYYGLKPVVE--FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA  160 (325)
Q Consensus        85 R~i~~GIaE~~~vg~A~GlA~~G~~p~v~--~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~  160 (325)
                      |++.+ -.|+++..+|.|.|+..-+|-++  +..+. +.-++--+.+  |+.       .+.||+++...-...  +.+.
T Consensus        41 ~~v~~-~hE~~A~~mAdgyar~tgkpgv~~~t~GPG-~~N~l~~l~~--A~~-------~~~Pvl~i~G~~~~~~~~~~~  109 (549)
T PRK06457         41 KYVQV-RHEEGAALAASVEAKITGKPSACMGTSGPG-SIHLLNGLYD--AKM-------DHAPVIALTGQVESDMIGHDY  109 (549)
T ss_pred             eEEEe-CcHHHHHHHHHHHHHHhCCCeEEEeCCCCc-hhhhHHHHHH--HHh-------cCCCEEEEecCCCccccCCCc
Confidence            56654 89999999999999885444433  44343 3334444433  332       589998876432222  2222


Q ss_pred             CcchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEeCcccc
Q 020510          161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLY  210 (325)
Q Consensus       161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~ir~~~~l~  210 (325)
                      .+......+++.+-- ..+...+++++...++.|++    .++||+|..+..+.
T Consensus       110 ~q~~d~~~l~~~vtk-~~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~Dv~  162 (549)
T PRK06457        110 FQEVNLTKLFDDVAV-FNQILINPENAEYIIRRAIREAISKRGVAHINLPVDIL  162 (549)
T ss_pred             ccccchhhhhcccee-EEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeCHhHh
Confidence            221122478888754 34556677777777776665    36899998776543

>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type

Probab=93.98  E-value=1.1  Score=45.94  Aligned_cols=112  Identities=19%  Similarity=0.091  Sum_probs=71.0

Q ss_pred             ceeechhhHHHHHHHHHHHhcc-CCeeEEe-cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCC-C
Q 020510           85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGA-Q  161 (325)
Q Consensus        85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~-~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~-t  161 (325)
                      |+|.+ -.|++++.+|.|.|+. |...++. +..+ .+.-++--+.+  |+       ..++||+++..+-.....|. .
T Consensus        41 ~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~Gp-G~~n~l~~i~~--A~-------~~~~Pvl~i~g~~~~~~~~~~~  109 (558)
T TIGR00118        41 EHILV-RHEQGAAHAADGYARASGKVGVVLVTSGP-GATNLVTGIAT--AY-------MDSIPMVVFTGQVPTSLIGSDA  109 (558)
T ss_pred             eEEEe-CcHHHHHHHHHHHHHHhCCCEEEEECCCC-cHHHHHHHHHH--HH-------hcCCCEEEEecCCCccccCCCC
Confidence            77775 8999999999999977 5443433 4434 44445555544  22       26899998865322222221 1


Q ss_pred             cchH-H-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHhC-----CCcEEEEeCccc
Q 020510          162 HSHC-Y-AAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL  209 (325)
Q Consensus       162 Hs~~-~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~ir~~~~l  209 (325)
                      + |. + .++++.+-.. .....++.++..+++.|++.     ++||||..+..+
T Consensus       110 ~-q~~d~~~~~~~~tk~-~~~v~~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~dv  162 (558)
T TIGR00118       110 F-QEADILGITMPITKH-SFQVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPKDV  162 (558)
T ss_pred             C-cccChhhhhcCccce-eEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEcChhh
Confidence            3 32 2 3788877543 34446788888888887763     589999877654

Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.

>PLN02470 acetolactate synthase

Probab=93.89  E-value=1.9  Score=44.53  Aligned_cols=155  Identities=17%  Similarity=0.043  Sum_probs=87.5

Q ss_pred             ccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeeEE-
Q 020510           35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVV-  112 (325)
Q Consensus        35 ~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~-G~~p~v-  112 (325)
                      ..++..+++.+.|.+   .+-+.|+.-+...    ...+.+.|.+.-+ =||+.+ -.|++++.+|.|.|+. |...++ 
T Consensus        11 ~~~~~a~~l~~~L~~---~GV~~vFg~pG~~----~~~l~dal~~~~~-i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~   81 (585)
T PLN02470         11 EPRKGADILVEALER---EGVDTVFAYPGGA----SMEIHQALTRSNC-IRNVLC-RHEQGEVFAAEGYAKASGKVGVCI   81 (585)
T ss_pred             ccccHHHHHHHHHHH---cCCCEEEEcCCcc----cHHHHHHHhccCC-ceEEEe-ccHHHHHHHHHHHHHHhCCCEEEE
Confidence            344556666666654   2344444333111    1122234432111 367776 8999999999999977 544443 


Q ss_pred             ecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCCCcchHHHHHHhcCCCcEEEeeCCHHHHHHH
Q 020510          113 EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGL  190 (325)
Q Consensus       113 ~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~  190 (325)
                      .+..+ .+.-++--|.+  |+.       .++||+++.......  +.+..|.....++++.+-.. .+...+++++..+
T Consensus        82 ~t~GP-G~~N~l~gia~--A~~-------~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~~tk~-~~~v~~~~~i~~~  150 (585)
T PLN02470         82 ATSGP-GATNLVTGLAD--ALL-------DSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKH-NYLVMDVEDIPRV  150 (585)
T ss_pred             ECCCc-cHHHHHHHHHH--HHh-------cCCcEEEEecCCChhhcCCCcCcccchhhhhhhheEE-EEEcCCHHHHHHH
Confidence            34434 44445555544  332       689998886432222  22222211223777776432 3345688899988


Q ss_pred             HHHhHhC-----CCcEEEEeCccc
Q 020510          191 LKAAIRD-----PDPVVFLENELL  209 (325)
Q Consensus       191 l~~a~~~-----~~Pv~ir~~~~l  209 (325)
                      ++.|++.     ++||||-.+..+
T Consensus       151 l~~A~~~A~s~~~GPV~l~iP~Dv  174 (585)
T PLN02470        151 IREAFFLASSGRPGPVLVDIPKDI  174 (585)
T ss_pred             HHHHHHHhcCCCCCeEEEEecCch
Confidence            8888873     589999877553

>PRK07979 acetolactate synthase 3 catalytic subunit; Validated

Probab=93.77  E-value=1.9  Score=44.29  Aligned_cols=114  Identities=23%  Similarity=0.110  Sum_probs=72.9

Q ss_pred             ceeechhhHHHHHHHHHHHhcc-CCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCCC
Q 020510           85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQ  161 (325)
Q Consensus        85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~t  161 (325)
                      |||.+ -.|+++..+|.|.|+. |...++.+.+...+.-+.--+.+  |+       ..+.||+++.......  +.+..
T Consensus        44 ~~i~~-rhE~~A~~mAdgYar~tg~~gv~~~t~GPG~~n~l~gi~~--A~-------~~~~Pvl~i~G~~~~~~~~~~~~  113 (574)
T PRK07979         44 DHVLV-RHEQAAVHMADGLARATGEVGVVLVTSGPGATNAITGIAT--AY-------MDSIPLVVLSGQVATSLIGYDAF  113 (574)
T ss_pred             eEEEe-CcHHHHHHHHHHHHHHhCCceEEEECCCccHhhhHHHHHH--Hh-------hcCCCEEEEECCCChhccCCCCC
Confidence            67774 8999999999999977 65555444323334434444543  32       2589998886432222  23332


Q ss_pred             cchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhC-----CCcEEEEeCccc
Q 020510          162 HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL  209 (325)
Q Consensus       162 Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~ir~~~~l  209 (325)
                      |.....++++.+-. -.+...+++++...++.|++.     ++||||..+..+
T Consensus       114 q~~d~~~l~~~~tk-~~~~v~~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~Dv  165 (574)
T PRK07979        114 QECDMVGISRPVVK-HSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDI  165 (574)
T ss_pred             ceecHHHHhhcccc-eEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhh
Confidence            22233478888754 344556889988888888872     589999877654

>PRK06725 acetolactate synthase 3 catalytic subunit; Validated

Probab=93.77  E-value=1.1  Score=46.11  Aligned_cols=115  Identities=16%  Similarity=0.045  Sum_probs=72.4

Q ss_pred             CceeechhhHHHHHHHHHHHhcc-CCeeEEe-cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCC
Q 020510           84 ERVLDTPITEAGFTGIGVGAAYY-GLKPVVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQ  161 (325)
Q Consensus        84 ~R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~-~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~t  161 (325)
                      =+||.+ -.|++++.+|-|.|+. |...++. +..+. +.-++--|.+  |+       ..+.||+++.........+..
T Consensus        53 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GpG-~~N~~~gla~--A~-------~~~~Pvl~I~G~~~~~~~~~~  121 (570)
T PRK06725         53 LKHILT-RHEQAAIHAAEGYARASGKVGVVFATSGPG-ATNLVTGLAD--AY-------MDSIPLVVITGQVATPLIGKD  121 (570)
T ss_pred             CcEEEe-cCHHHHHHHHHHHHHHhCCCeEEEECCCcc-HHHHHHHHHH--Hh-------hcCcCEEEEecCCCcccccCC
Confidence            377775 8999999999999977 5444433 44443 4444444433  32       258999887643222222221


Q ss_pred             cchH-H-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHhC-----CCcEEEEeCcccc
Q 020510          162 HSHC-Y-AAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELLY  210 (325)
Q Consensus       162 Hs~~-~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~ir~~~~l~  210 (325)
                      ..|. + ..+++.+-. -.+...+++++..+++.|++.     ++|||+..+..+.
T Consensus       122 ~~q~~d~~~l~~~itk-~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv~  176 (570)
T PRK06725        122 GFQEADVVGITVPVTK-HNYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPKDVQ  176 (570)
T ss_pred             CCcccchhhhhhccce-eEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEccccchh
Confidence            1132 2 378888754 344457889999988888873     6899998776543

>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed

Probab=93.77  E-value=0.98  Score=46.09  Aligned_cols=111  Identities=19%  Similarity=0.091  Sum_probs=69.8

Q ss_pred             ceeechhhHHHHHHHHHHHhcc-CCeeEEe-cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCC
Q 020510           85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA  160 (325)
Q Consensus        85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~-~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~  160 (325)
                      |++.+ ..|++++.+|.|.|+. |...++. +..+. +.-++--+.+  |+       ....||+++.......  +.+.
T Consensus        40 ~~v~~-~hE~~A~~~Adgyar~sg~~gv~~~t~GpG-~~n~~~~l~~--A~-------~~~~Pvl~i~g~~~~~~~~~~~  108 (548)
T PRK08978         40 EHLLC-RHEQGAAMAAIGYARATGKVGVCIATSGPG-ATNLITGLAD--AL-------LDSVPVVAITGQVSSPLIGTDA  108 (548)
T ss_pred             eEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCCc-HHHHHHHHHH--Hh-------hcCCCEEEEecCCCccccCCCC
Confidence            67765 8999999999999988 5443333 44343 3435555544  32       2589998886532222  2222


Q ss_pred             CcchH-H-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHhC-----CCcEEEEeCccc
Q 020510          161 QHSHC-Y-AAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL  209 (325)
Q Consensus       161 tHs~~-~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~ir~~~~l  209 (325)
                       + |. + .++++.+-... +...+++++..+++.|++.     ++||||-.+..+
T Consensus       109 -~-q~~d~~~~~~~~tk~~-~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv  161 (548)
T PRK08978        109 -F-QEIDVLGLSLACTKHS-FLVQSLEELPEIMAEAFEIASSGRPGPVLVDIPKDI  161 (548)
T ss_pred             -C-cccchhccccCceeeE-EEECCHHHHHHHHHHHHHHHhcCCCCcEEEecChhh
Confidence             3 32 2 37888775533 3345788888888877762     489999877553

>PRK11269 glyoxylate carboligase; Provisional

Probab=93.71  E-value=3.9  Score=42.21  Aligned_cols=151  Identities=11%  Similarity=-0.011  Sum_probs=86.1

Q ss_pred             ccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccC-CeeE--Ee
Q 020510           37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG-LKPV--VE  113 (325)
Q Consensus        37 ~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G-~~p~--v~  113 (325)
                      ++..+++.+.|.+   .+-+.|+..+-..    ...+.+.+.+.- .=||+.+ ..|++++.+|.|.|+.. -+|-  +.
T Consensus         4 ~~~~~~l~~~L~~---~Gv~~vFg~pG~~----~~~l~dal~~~~-~i~~v~~-rhE~~A~~mAdGYar~t~g~~gv~~~   74 (591)
T PRK11269          4 MRAVDAAVLVLEK---EGVTTAFGVPGAA----INPFYSAMRKHG-GIRHILA-RHVEGASHMAEGYTRATAGNIGVCIG   74 (591)
T ss_pred             ccHHHHHHHHHHH---cCCCEEEeCCCcc----cHHHHHHHhhcC-CCcEEee-CCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            4455555555543   2445455433111    112234443221 1378886 89999999999999775 4443  33


Q ss_pred             cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCCCcchH--HHHHHhcCCCcEEEeeCCHHHHHH
Q 020510          114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQHSHC--YAAWYASVPGLKVLSPYSSEDARG  189 (325)
Q Consensus       114 ~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~tHs~~--~~a~~~~iP~~~V~~P~d~~e~~~  189 (325)
                      |..+..++ ++--+.+  |+.       .+.||+++...-...  +.+. + |.  ..++++.+--. .+...++.++..
T Consensus        75 t~GPG~~N-~l~gl~~--A~~-------~~~Pvl~I~G~~~~~~~~~~~-~-q~~d~~~l~~~itk~-s~~v~~~~~~~~  141 (591)
T PRK11269         75 TSGPAGTD-MITGLYS--ASA-------DSIPILCITGQAPRARLHKED-F-QAVDIESIAKPVTKW-AVTVREPALVPR  141 (591)
T ss_pred             CCCCcHHH-HHHHHHH--Hhh-------cCCCEEEEecCCCccccCCCc-c-cccChhhHhhcceeE-EEEcCCHHHHHH
Confidence            55554444 4444433  332       689998876432222  2222 3 43  23788877442 344577888888


Q ss_pred             HHHHhHhC-----CCcEEEEeCccc
Q 020510          190 LLKAAIRD-----PDPVVFLENELL  209 (325)
Q Consensus       190 ~l~~a~~~-----~~Pv~ir~~~~l  209 (325)
                      +++.|++.     ++||||-.+..+
T Consensus       142 ~i~~A~~~A~~~~~GPV~l~iP~Dv  166 (591)
T PRK11269        142 VFQQAFHLMRSGRPGPVLIDLPFDV  166 (591)
T ss_pred             HHHHHHHHHhhCCCCeEEEEeChhh
Confidence            88887762     479999877553

>PRK07710 acetolactate synthase catalytic subunit; Reviewed

Probab=93.69  E-value=2.7  Score=43.20  Aligned_cols=153  Identities=19%  Similarity=0.108  Sum_probs=86.1

Q ss_pred             ccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeeEE-
Q 020510           35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVV-  112 (325)
Q Consensus        35 ~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~-G~~p~v-  112 (325)
                      ++++..+.+.+.|.+   .+-+-|+..+...    ...+.+.+.+ . +=+++.+ ..|++++.+|.|.|+. |...++ 
T Consensus        14 ~~~~~~~~i~~~L~~---~Gv~~vFg~pG~~----~~~l~~al~~-~-~i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~   83 (571)
T PRK07710         14 KLMTGAQMLIEALEK---EGVEVIFGYPGGA----VLPLYDALYD-C-GIPHILT-RHEQGAIHAAEGYARISGKPGVVI   83 (571)
T ss_pred             ccchHHHHHHHHHHH---cCCCEEEeCCCcc----hHHHHHHHHh-c-CCcEEEe-CCHHHHHHHHHHHHHHhCCCeEEE
Confidence            344555555555544   2445444433111    1122334432 3 3578876 9999999999999987 543333 


Q ss_pred             ecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCCCcchHHHHHHhcCCCcEEEeeCCHHHHHHH
Q 020510          113 EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGL  190 (325)
Q Consensus       113 ~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~  190 (325)
                      .+..+.. .-++--|.+  |+       ..+.||+++.......  +.+..+.....++++.+-.. .+...+++++..+
T Consensus        84 ~t~GPG~-~N~~~gl~~--A~-------~~~~Pvl~ItG~~~~~~~~~~~~q~~d~~~l~~~~tk~-~~~v~~~~~~~~~  152 (571)
T PRK07710         84 ATSGPGA-TNVVTGLAD--AM-------IDSLPLVVFTGQVATSVIGSDAFQEADIMGITMPVTKH-NYQVRKASDLPRI  152 (571)
T ss_pred             ECCCccH-HHHHHHHHH--Hh-------hcCCCEEEEeccCCccccCCCCccccchhhhhhcccce-EEecCCHHHHHHH
Confidence            3444443 334444543  33       2589999886432222  22222212224788877543 3455677777777


Q ss_pred             HHHhHh----C-CCcEEEEeCcc
Q 020510          191 LKAAIR----D-PDPVVFLENEL  208 (325)
Q Consensus       191 l~~a~~----~-~~Pv~ir~~~~  208 (325)
                      ++.|++    . ++||||-.+..
T Consensus       153 i~~A~~~A~~~~~GPV~l~iP~D  175 (571)
T PRK07710        153 IKEAFHIATTGRPGPVLIDIPKD  175 (571)
T ss_pred             HHHHHHHHhcCCCCcEEEEcChh
Confidence            777776    2 58999987654

>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins

Probab=93.65  E-value=0.8  Score=39.25  Aligned_cols=107  Identities=15%  Similarity=0.145  Sum_probs=61.1

Q ss_pred             ceeechhhHHHHHHHHHHHhccCCeeEE-e-cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCC-CC
Q 020510           85 RVLDTPITEAGFTGIGVGAAYYGLKPVV-E-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVG-AQ  161 (325)
Q Consensus        85 R~i~~GIaE~~~vg~A~GlA~~G~~p~v-~-~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G-~t  161 (325)
                      +|+.+ -.|+++..+|-|.|+.--+|-+ . +..+ .+.-+.--+.+...         ...|++++.........+ .+
T Consensus        37 ~~v~~-rhE~~A~~mAdgyar~sg~~gv~~~t~Gp-G~~n~~~gl~~A~~---------~~~Pvl~i~g~~~~~~~~~~~  105 (162)
T cd07037          37 RLHVR-VDERSAAFFALGLAKASGRPVAVVCTSGT-AVANLLPAVVEAYY---------SGVPLLVLTADRPPELRGTGA  105 (162)
T ss_pred             eEEec-cChHHHHHHHHHHHHhhCCCEEEEECCch-HHHHHhHHHHHHHh---------cCCCEEEEECCCCHHhcCCCC
Confidence            66665 8999999999999988444433 3 3333 34445555544222         579998886543322211 22


Q ss_pred             cchH-H-HHHHhcCCCcEEEeeCCHHH------HHHHHHHhHh----C-CCcEEEE
Q 020510          162 HSHC-Y-AAWYASVPGLKVLSPYSSED------ARGLLKAAIR----D-PDPVVFL  204 (325)
Q Consensus       162 Hs~~-~-~a~~~~iP~~~V~~P~d~~e------~~~~l~~a~~----~-~~Pv~ir  204 (325)
                      + |. + ..+++.+-.. .....++++      +..+++.|++    . ++||++-
T Consensus       106 ~-q~~d~~~l~~~vtk~-~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~  159 (162)
T cd07037         106 N-QTIDQVGLFGDYVRW-SVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLN  159 (162)
T ss_pred             C-cccchhhhccceeeE-EEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEe
Confidence            3 32 2 3777776432 333344444      4555555554    2 5899984

Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim

>PRK08273 thiamine pyrophosphate protein; Provisional

Probab=93.54  E-value=2.9  Score=43.24  Aligned_cols=116  Identities=19%  Similarity=0.122  Sum_probs=68.2

Q ss_pred             ceeechhhHHHHHHHHHHHhcc-CCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCCC
Q 020510           85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQ  161 (325)
Q Consensus        85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~t  161 (325)
                      +||.+ -.|++++.+|-|.|+. |...++.+.+...+.-++--|.+  |+.       .++||+++...-...  +.+..
T Consensus        44 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gi~~--A~~-------d~vPvl~I~G~~~~~~~~~~~~  113 (597)
T PRK08273         44 EFVQA-RHEEMAAFMAVAHAKFTGEVGVCLATSGPGAIHLLNGLYD--AKL-------DHVPVVAIVGQQARAALGGHYQ  113 (597)
T ss_pred             eEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHH--HHh-------cCCCEEEEecCCchhhcCCCCC
Confidence            67775 8999999999999987 54444433323344444444533  332       589998876432221  22221


Q ss_pred             cchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEeCcccc
Q 020510          162 HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLY  210 (325)
Q Consensus       162 Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~ir~~~~l~  210 (325)
                      +.....++++.+-.--.....+++++...++.|++    .++||||..+..+.
T Consensus       114 q~~d~~~l~~~vt~k~~~~v~~~~~~~~~l~~A~~~A~~~~gPV~i~iP~Dv~  166 (597)
T PRK08273        114 QEVDLQSLFKDVAGAFVQMVTVPEQLRHLVDRAVRTALAERTVTAVILPNDVQ  166 (597)
T ss_pred             CccCHHHHHHHHHHHHeeEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeCcchh
Confidence            11122367777641124455667777766666655    46899998776543

>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family

Probab=93.49  E-value=1.3  Score=41.55  Aligned_cols=142  Identities=15%  Similarity=0.050  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhH---HHHHHHHHHHhccC-CeeEEec
Q 020510           39 VREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITE---AGFTGIGVGAAYYG-LKPVVEF  114 (325)
Q Consensus        39 ~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE---~~~vg~A~GlA~~G-~~p~v~~  114 (325)
                      .-.++.++|.++....++.+++ .|++.++           +. | +|++..---   -.++.+|.|++++. -++++++
T Consensus        12 i~~~~~~a~~~l~~~p~d~iiv-sdiGc~~-----------~~-~-~~l~~~~~~t~mG~alPaAiGaklA~Pd~~VVai   77 (287)
T TIGR02177        12 ILSALQRALAELNLDPEQVVVV-SGIGCSA-----------KT-P-HYVNVNGFHGLHGRALPVATGIKLANPHLKVIVV   77 (287)
T ss_pred             HHHHHHHHHHHhcCCCCCEEEE-ECCCccc-----------cc-C-CeEecCCcccccccHHHHHHHHHHHCCCCcEEEE
Confidence            4567777887765545565555 4776321           12 4 555543211   23556778877764 4666666


Q ss_pred             ccccHH--HHHHHHHHHHHhhccccCCCCccCCEEEEeC-C---CCCCCCC-CC-----------c-----chHH--HHH
Q 020510          115 MTFNFS--MQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N---GAAAGVG-AQ-----------H-----SHCY--AAW  169 (325)
Q Consensus       115 ~~~~f~--~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~---G~~~g~G-~t-----------H-----s~~~--~a~  169 (325)
                      . .+..  .-....+.+ ++.        .++|++++.. +   |.+.+.- ++           +     ..+.  .++
T Consensus        78 ~-GDG~f~~mg~~eL~t-A~r--------~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~~~~~~~~g~~~~~~np~~~a~  147 (287)
T TIGR02177        78 G-GDGDLYGIGGNHFVA-AGR--------RNVDITVIVHDNQVYGLTKGQASPTLLKGVKTKSLPYPNIQDPVNPLLLAI  147 (287)
T ss_pred             e-CchHHHhccHHHHHH-HHH--------hCcCeEEEEEECHHHHhhhcccccCccCCcceeecccCccCCCCCHHHHHH
Confidence            5 5543  233444544 333        4777666543 2   2222110 00           0     0011  244


Q ss_pred             HhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510          170 YASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL  204 (325)
Q Consensus       170 ~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir  204 (325)
                      .....-.-.....+++|+..+++.|++.++|++|-
T Consensus       148 A~g~g~va~~~~~~~~eL~~ai~~Al~~~GpslIe  182 (287)
T TIGR02177       148 ALGYTFVARGFSGDVAHLKEIIKEAINHKGYALVD  182 (287)
T ss_pred             hCCCCeEEEEecCCHHHHHHHHHHHHhCCCCEEEE
Confidence            44443333334699999999999999999999985

Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.

>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL)

Probab=93.49  E-value=1.2  Score=38.19  Aligned_cols=111  Identities=23%  Similarity=0.098  Sum_probs=65.2

Q ss_pred             CCceeechh--hHHHHHHHHHHHhccC-CeeEEecccccH-HHHHHHHHHHHHhhccccCCCCccCCEEEEeC-C-CCCC
Q 020510           83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GAAA  156 (325)
Q Consensus        83 p~R~i~~GI--aE~~~vg~A~GlA~~G-~~p~v~~~~~~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~~~  156 (325)
                      |.+|+..+.  +=-..+++|.|++++. -++++++. .+. .+.....+- .++.        .++|++++.- + +...
T Consensus        38 p~~~~~~~~~g~mG~~lp~AiGa~la~~~~~vv~i~-GDG~f~~~~~el~-ta~~--------~~lpv~ivv~NN~~~~~  107 (172)
T cd02004          38 PRHRLDAGTFGTLGVGLGYAIAAALARPDKRVVLVE-GDGAFGFSGMELE-TAVR--------YNLPIVVVVGNNGGWYQ  107 (172)
T ss_pred             CCcEecCCCCCcccchHHHHHHHHHhCCCCeEEEEE-cchhhcCCHHHHH-HHHH--------cCCCEEEEEEECccccc
Confidence            788888653  2233556777887775 36666665 443 222334443 2442        4788665542 2 2211


Q ss_pred             C----C----CC-----Ccch-HHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510          157 G----V----GA-----QHSH-CYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL  204 (325)
Q Consensus       157 g----~----G~-----tHs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir  204 (325)
                      .    .    +.     .+.. .+..+.++. |+..+.-.+.+|+..+++.+...++|++|-
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie  168 (172)
T cd02004         108 GLDGQQLSYGLGLPVTTLLPDTRYDLVAEAF-GGKGELVTTPEELKPALKRALASGKPALIN  168 (172)
T ss_pred             chhhhhhhccCCCceeccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHHcCCCEEEE
Confidence            0    0    00     0111 223555555 677777889999999999999888999884

Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.

>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed

Probab=93.30  E-value=3.3  Score=42.40  Aligned_cols=152  Identities=17%  Similarity=0.072  Sum_probs=85.8

Q ss_pred             ccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeeEEe-c
Q 020510           37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVVE-F  114 (325)
Q Consensus        37 ~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~-~  114 (325)
                      ++..+++.+.|.+   .+-+.|+..+...    ...+.+.+.+ - .=+|+.+ ..|++++.+|-|.|+. |...++. +
T Consensus         8 ~~~~~~l~~~L~~---~Gv~~vFgipG~~----~~~l~~al~~-~-~i~~v~~-~hE~~A~~~Adgyar~tg~~~v~~~t   77 (561)
T PRK06048          8 MTGARAIIKCLEK---EGVEVIFGYPGGA----IIPVYDELYD-S-DLRHILV-RHEQAAAHAADGYARATGKVGVCVAT   77 (561)
T ss_pred             ccHHHHHHHHHHH---cCCCEEEECCCcc----hHHHHHHHhh-C-CCeEEEe-ccHHHHHHHHHHHHHHhCCCeEEEEC
Confidence            4445555555544   3455555443111    1122344432 2 2367776 8999999999999977 5443333 4


Q ss_pred             ccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCCCcchHHHHHHhcCCCcEEEeeCCHHHHHHHHH
Q 020510          115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLK  192 (325)
Q Consensus       115 ~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~  192 (325)
                      ..+. +.-++--|.+  |+       ..+.||+++.......  +.+..|.....++++.+-.. .+.-.++.++..+++
T Consensus        78 ~GpG-~~n~~~gl~~--A~-------~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~-s~~v~~~~~i~~~i~  146 (561)
T PRK06048         78 SGPG-ATNLVTGIAT--AY-------MDSVPIVALTGQVPRSMIGNDAFQEADITGITMPITKH-NYLVQDAKDLPRIIK  146 (561)
T ss_pred             CCCc-HHHHHHHHHH--Hh-------hcCCCEEEEeccCCccccCCCCccccchhhhccCcceE-EEEeCCHHHHHHHHH
Confidence            4343 4445555544  32       2689999886432222  22222211223777777432 334567888888888


Q ss_pred             HhHh-----CCCcEEEEeCccc
Q 020510          193 AAIR-----DPDPVVFLENELL  209 (325)
Q Consensus       193 ~a~~-----~~~Pv~ir~~~~l  209 (325)
                      .|++     .++||||..+..+
T Consensus       147 ~A~~~A~~~~~GPV~l~iP~dv  168 (561)
T PRK06048        147 EAFHIASTGRPGPVLIDLPKDV  168 (561)
T ss_pred             HHHHHHhcCCCCeEEEecChhh
Confidence            7777     2589999877553

>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]

Probab=93.24  E-value=0.24  Score=41.37  Aligned_cols=108  Identities=19%  Similarity=0.321  Sum_probs=68.6

Q ss_pred             eeechh-hHHHHHHHHHHHhccCCeeEEecccccHHH--HHHHHHHHHHhhccccCCCCccCCEEEEeCC-CCCCCCCCC
Q 020510           86 VLDTPI-TEAGFTGIGVGAAYYGLKPVVEFMTFNFSM--QAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGVGAQ  161 (325)
Q Consensus        86 ~i~~GI-aE~~~vg~A~GlA~~G~~p~v~~~~~~f~~--ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~~g~G~t  161 (325)
                      +.+++. .|...+|+++|+.++|.+|..-++.+..-+  -++..+..  .         -++|+.+..++ |.... +..
T Consensus        43 i~~i~vtREEeg~GIcAGa~lAGkk~ailmQnsGlGNsiNal~SL~~--t---------y~iPl~ml~ShRG~~~E-~i~  110 (172)
T COG4032          43 IPEIPVTREEEGVGICAGAYLAGKKPAILMQNSGLGNSINALASLYV--T---------YKIPLLMLASHRGVLKE-GIE  110 (172)
T ss_pred             cccccccchhcceeeehhhhhcCCCcEEEEeccCcchHHHHHHHHHH--H---------hccchhhhhhccchhhc-CCc
Confidence            566655 689999999999999999999888765422  33333211  1         24665554443 44322 222


Q ss_pred             c---ch-HHHHHHhcCCCcEEEeeCCHHHHHHHHHH----hHhCCCcEEEEeC
Q 020510          162 H---SH-CYAAWYASVPGLKVLSPYSSEDARGLLKA----AIRDPDPVVFLEN  206 (325)
Q Consensus       162 H---s~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~----a~~~~~Pv~ir~~  206 (325)
                      -   .. ....++... ++.-+.|..|+|+..++..    +++...||.+..+
T Consensus       111 AQVpmGr~~~kiLe~~-~lpt~t~~~p~Ea~~li~~~~~~a~~~s~pv~vlls  162 (172)
T COG4032         111 AQVPMGRALPKILEGL-ELPTYTIIGPEEALPLIENAILDAFENSRPVAVLLS  162 (172)
T ss_pred             cccccchhhHHHHhhc-CCcccccCCHHHHHHHHHHHHHHHHHcCCceEEEec
Confidence            1   11 223566654 6668889999998877765    4556789998754

>PRK09107 acetolactate synthase 3 catalytic subunit; Validated

Probab=93.22  E-value=1.6  Score=45.08  Aligned_cols=113  Identities=17%  Similarity=0.071  Sum_probs=71.0

Q ss_pred             CceeechhhHHHHHHHHHHHhcc-CCeeEEe-cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCC-
Q 020510           84 ERVLDTPITEAGFTGIGVGAAYY-GLKPVVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGA-  160 (325)
Q Consensus        84 ~R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~-~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~-  160 (325)
                      =|||.+ ..|++++.+|-|.|+. |...++. +..+. +.-++--|.+  |+       ..+.||+++.........|. 
T Consensus        50 i~~I~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG-~~N~l~gia~--A~-------~~~~Pvl~i~G~~~~~~~~~~  118 (595)
T PRK09107         50 IQHILV-RHEQGAGHAAEGYARSTGKPGVVLVTSGPG-ATNAVTPLQD--AL-------MDSIPLVCITGQVPTHLIGSD  118 (595)
T ss_pred             CeEEEE-CChHHHHHHHHHHHHHhCCCEEEEECCCcc-HhHHHHHHHH--Hh-------hcCCCEEEEEcCCChhhcCCC
Confidence            378876 9999999999999976 6444443 44443 3334444433  33       25899988764322222221 


Q ss_pred             CcchH-H-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHhC-----CCcEEEEeCccc
Q 020510          161 QHSHC-Y-AAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL  209 (325)
Q Consensus       161 tHs~~-~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~ir~~~~l  209 (325)
                      .+ |. + .++++.+-- -.+...++.++..+++.|++.     ++||||-.+..+
T Consensus       119 ~~-q~~d~~~l~~~vtk-~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv  172 (595)
T PRK09107        119 AF-QECDTVGITRPCTK-HNWLVKDVNDLARVIHEAFHVATSGRPGPVVVDIPKDV  172 (595)
T ss_pred             CC-cccchhhhhhhheE-EEEEeCCHHHHHHHHHHHHHHhcCCCCceEEEecCCCh
Confidence            23 32 2 377777643 233457888888888888773     589999877654

>PRK06546 pyruvate dehydrogenase; Provisional

Probab=93.18  E-value=2.5  Score=43.61  Aligned_cols=115  Identities=16%  Similarity=0.055  Sum_probs=70.4

Q ss_pred             ceeechhhHHHHHHHHHHHhccCCeeEEec-ccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCCC
Q 020510           85 RVLDTPITEAGFTGIGVGAAYYGLKPVVEF-MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQ  161 (325)
Q Consensus        85 R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~-~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~t  161 (325)
                      |||.+ -.|++++.+|-|.|+...+|-+++ .....+.-++--+.+  |+.       .+.||+++.......  +.|..
T Consensus        43 ~~i~~-rhE~~A~~mAdgyar~tgk~~v~~v~~GpG~~N~~~gl~~--A~~-------~~~Pvl~I~G~~~~~~~~~~~~  112 (578)
T PRK06546         43 EWVHV-RHEEAAAFAAAAEAQLTGKLAVCAGSCGPGNLHLINGLYD--AHR-------SGAPVLAIASHIPSAQIGSGFF  112 (578)
T ss_pred             eEEEe-CcHHHHHHHHHhHHHhhCCceEEEECCCCcHHHHHHHHHH--HHh-------cCCCEEEEeCCCCccccCCCCc
Confidence            57775 799999999999999844444432 222233434444543  332       589999886432222  23332


Q ss_pred             cchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEeCcccc
Q 020510          162 HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLY  210 (325)
Q Consensus       162 Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~ir~~~~l~  210 (325)
                      |......+++.+-- -.+...+++++...++.|++    .++||+|-.+..+.
T Consensus       113 Qe~d~~~l~~~~tk-~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~lP~Dv~  164 (578)
T PRK06546        113 QETHPDRLFVECSG-YCEMVSSAEQAPRVLHSAIQHAVAGGGVSVVTLPGDIA  164 (578)
T ss_pred             cccChhhhccccee-eEeEeCCHHHHHHHHHHHHHHHhcCCCCEEEEcChhhh
Confidence            21122477776643 34566778888777776666    36899998776543

>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways

Probab=93.14  E-value=3  Score=37.95  Aligned_cols=38  Identities=21%  Similarity=0.135  Sum_probs=29.0

Q ss_pred             HHHHhcC--CCcEEEeeCCHHHHHHHHHHhHh-CCCcEEEE
Q 020510          167 AAWYASV--PGLKVLSPYSSEDARGLLKAAIR-DPDPVVFL  204 (325)
Q Consensus       167 ~a~~~~i--P~~~V~~P~d~~e~~~~l~~a~~-~~~Pv~ir  204 (325)
                      ..+.++.  +.+....+.++.|++.+++.+++ .++|++|-
T Consensus       159 ~~iA~a~G~~~~~~~~v~~~~~l~~al~~al~~~~GP~lI~  199 (237)
T cd02018         159 VLIAATHGCVYVARLSPALKKHFLKVVKEAISRTDGPTFIH  199 (237)
T ss_pred             HHHHHHCCCCEEEEEccCCHHHHHHHHHHHHhcCCCCEEEE
Confidence            3555554  44333459999999999999998 89999984

Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.

>PRK08527 acetolactate synthase 3 catalytic subunit; Validated

Probab=93.13  E-value=2.5  Score=43.32  Aligned_cols=112  Identities=19%  Similarity=0.087  Sum_probs=72.3

Q ss_pred             ceeechhhHHHHHHHHHHHhcc-CCeeE-EecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCC-C
Q 020510           85 RVLDTPITEAGFTGIGVGAAYY-GLKPV-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGA-Q  161 (325)
Q Consensus        85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~-v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~-t  161 (325)
                      +++.+ -.|++++.+|.|.|+. |...+ +.+..+.+++ ++--+.+  |+.       .+.||++++........|. .
T Consensus        43 ~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n-~~~gla~--A~~-------~~~Pvl~i~G~~~~~~~~~~~  111 (563)
T PRK08527         43 KHILT-RHEQAAVHAADGYARASGKVGVAIVTSGPGFTN-AVTGLAT--AYM-------DSIPLVLISGQVPNSLIGTDA  111 (563)
T ss_pred             eEEEe-ccHHHHHHHHHHHHhhhCCCEEEEECCCCcHHH-HHHHHHH--Hhh-------cCCCEEEEecCCCccccCCCC
Confidence            67665 8999999999999977 54434 3355454444 5555544  332       6899998864322222221 1


Q ss_pred             cchH-H-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHhC-----CCcEEEEeCccc
Q 020510          162 HSHC-Y-AAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL  209 (325)
Q Consensus       162 Hs~~-~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~ir~~~~l  209 (325)
                      + |. + .++++.+-. ..+...+++++..+++.|++.     ++||||-.+..+
T Consensus       112 ~-q~~d~~~~~~~~tk-~s~~v~~~~~i~~~l~~A~~~a~s~~~GPV~l~iP~Dv  164 (563)
T PRK08527        112 F-QEIDAVGISRPCVK-HNYLVKSIEELPRILKEAFYIARSGRPGPVHIDIPKDV  164 (563)
T ss_pred             C-cccchhhhhhcccc-eEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhH
Confidence            3 33 2 378887754 345568999999999988872     479999876543

>PRK07789 acetolactate synthase 1 catalytic subunit; Validated

Probab=92.93  E-value=5.1  Score=41.56  Aligned_cols=113  Identities=18%  Similarity=0.085  Sum_probs=71.5

Q ss_pred             ceeechhhHHHHHHHHHHHhcc-CCeeEE-ecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCC
Q 020510           85 RVLDTPITEAGFTGIGVGAAYY-GLKPVV-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA  160 (325)
Q Consensus        85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~v-~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~  160 (325)
                      ++|.+ -.|++++.+|.|.|+. |...++ .+..+.+++ ++--|.+  |+       ..++||++++......  +.+.
T Consensus        71 ~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N-~l~gl~~--A~-------~~~~PllvI~G~~~~~~~~~~~  139 (612)
T PRK07789         71 RHVLV-RHEQGAGHAAEGYAQATGRVGVCMATSGPGATN-LVTPIAD--AN-------MDSVPVVAITGQVGRGLIGTDA  139 (612)
T ss_pred             eEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHH-HHHHHHH--Hh-------hcCCCEEEEecCCCccccCCCc
Confidence            66665 8999999999999987 644443 344444333 4454543  33       2689998886532222  2222


Q ss_pred             CcchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhC-----CCcEEEEeCccc
Q 020510          161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL  209 (325)
Q Consensus       161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~ir~~~~l  209 (325)
                      .+.....++++.+-. ..+...+++++..+++.|++.     ++||||-.+..+
T Consensus       140 ~q~~d~~~l~~~~tk-~s~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv  192 (612)
T PRK07789        140 FQEADIVGITMPITK-HNFLVTDADDIPRVIAEAFHIASTGRPGPVLVDIPKDA  192 (612)
T ss_pred             Ccccchhhhhhccee-EEEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEEccch
Confidence            221122478888764 334567888988888888862     589999877654

>PRK08155 acetolactate synthase catalytic subunit; Validated

Probab=92.92  E-value=3.7  Score=42.08  Aligned_cols=154  Identities=16%  Similarity=0.064  Sum_probs=86.5

Q ss_pred             cccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeE-Ee-
Q 020510           36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPV-VE-  113 (325)
Q Consensus        36 ~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~-v~-  113 (325)
                      +++..+++.+.|.+   .+-+.|+..+...    ...+.+.+.+.- .=||+. ...|+++..+|.|.|+..-+|- +. 
T Consensus        12 ~~~~~~~l~~~L~~---~GV~~vFgvpG~~----~~~l~dal~~~~-~i~~i~-~~hE~~A~~~Adgyar~tg~~gv~~~   82 (564)
T PRK08155         12 RFTGAELIVRLLER---QGIRIVTGIPGGA----ILPLYDALSQST-QIRHIL-ARHEQGAGFIAQGMARTTGKPAVCMA   82 (564)
T ss_pred             cccHHHHHHHHHHH---cCCCEEEeCCCcc----cHHHHHHHhccC-CceEEE-eccHHHHHHHHHHHHHHcCCCeEEEE
Confidence            34445555555543   3456555544211    112223443211 136777 4899999999999999854543 33 


Q ss_pred             cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCCCcchHHHHHHhcCCCcEEEeeCCHHHHHHHH
Q 020510          114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLL  191 (325)
Q Consensus       114 ~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l  191 (325)
                      +..+.. .-++--+.+  |+.       .+.||+++..+-...  +.+..+.....++++.+--.. +...+++++...+
T Consensus        83 t~GpG~-~N~l~gl~~--A~~-------~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~~tk~~-~~v~~~~~~~~~i  151 (564)
T PRK08155         83 CSGPGA-TNLVTAIAD--ARL-------DSIPLVCITGQVPASMIGTDAFQEVDTYGISIPITKHN-YLVRDIEELPQVI  151 (564)
T ss_pred             CCCCcH-HHHHHHHHH--HHh-------cCCCEEEEeccCCcccccCCCccccchhhhhhccceEE-EEcCCHHHHHHHH
Confidence            444433 334555544  332       689998876432221  222222112247888775433 3345788888888


Q ss_pred             HHhHhC-----CCcEEEEeCccc
Q 020510          192 KAAIRD-----PDPVVFLENELL  209 (325)
Q Consensus       192 ~~a~~~-----~~Pv~ir~~~~l  209 (325)
                      +.|++.     ++||||-.+..+
T Consensus       152 ~~A~~~a~~~~~GPV~i~iP~Dv  174 (564)
T PRK08155        152 SDAFRIAQSGRPGPVWIDIPKDV  174 (564)
T ss_pred             HHHHHHHhcCCCCcEEEEcCHhH
Confidence            877762     589999876543

>PRK06882 acetolactate synthase 3 catalytic subunit; Validated

Probab=92.73  E-value=4.9  Score=41.26  Aligned_cols=110  Identities=22%  Similarity=0.119  Sum_probs=69.5

Q ss_pred             ceeechhhHHHHHHHHHHHhcc-CCeeEEe-cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCC
Q 020510           85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA  160 (325)
Q Consensus        85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~-~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~  160 (325)
                      ||+.+ -.|+++..+|-|.|+. |...++. +..+. +.-++--|.+  |+       ..++||+++..+....  +.+.
T Consensus        44 ~~v~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG-~~N~l~~i~~--A~-------~~~~Pvlvi~G~~~~~~~~~~~  112 (574)
T PRK06882         44 EHVLV-RHEQAAVHMADGYARSTGKVGCVLVTSGPG-ATNAITGIAT--AY-------TDSVPLVILSGQVPSNLIGTDA  112 (574)
T ss_pred             eEEEe-ccHHHHHHHHHHHHHhhCCCeEEEECCCcc-HHHHHHHHHH--Hh-------hcCCCEEEEecCCCccccCCCc
Confidence            67776 8999999999999987 5333333 44443 3434454543  22       2689999886432222  2222


Q ss_pred             CcchH--HHHHHhcCCCcEEEeeCCHHHHHHHHHHhHh-----CCCcEEEEeCcc
Q 020510          161 QHSHC--YAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENEL  208 (325)
Q Consensus       161 tHs~~--~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~ir~~~~  208 (325)
                       + |.  ...+++.+-. ......+++++...++.|++     .++||||-.+..
T Consensus       113 -~-q~~d~~~l~~~vtk-~s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D  164 (574)
T PRK06882        113 -F-QECDMLGISRPVVK-HSFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDIPKD  164 (574)
T ss_pred             -c-cccchhhhhhcccc-eEEEeCCHHHHHHHHHHHHHHHhcCCCCCEEEecCHH
Confidence             3 32  2478887653 34556688888777777776     258999987654

>PRK07282 acetolactate synthase catalytic subunit; Reviewed

Probab=92.56  E-value=2.3  Score=43.64  Aligned_cols=113  Identities=23%  Similarity=0.144  Sum_probs=70.1

Q ss_pred             ceeechhhHHHHHHHHHHHhcc-CCeeE-EecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCC
Q 020510           85 RVLDTPITEAGFTGIGVGAAYY-GLKPV-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA  160 (325)
Q Consensus        85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~-v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~  160 (325)
                      |||.+ -.|++++.+|.|.|+. |...+ +.+..+. +.-++--|.+  |+.       .+.||+++.......  +.+.
T Consensus        50 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG-~~n~~~gla~--A~~-------~~~Pvl~i~G~~~~~~~~~~~  118 (566)
T PRK07282         50 RHILA-RHEQGALHEAEGYAKSTGKLGVAVVTSGPG-ATNAITGIAD--AMS-------DSVPLLVFTGQVARAGIGKDA  118 (566)
T ss_pred             eEEEe-cCHHHHHHHHHHHHHHhCCCeEEEECCCcc-HHHHHHHHHH--Hhh-------cCCCEEEEecccccccCCCCC
Confidence            78876 8999999999999977 64443 3344443 4444444543  321       589999886432222  2222


Q ss_pred             CcchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhC-----CCcEEEEeCccc
Q 020510          161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL  209 (325)
Q Consensus       161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~ir~~~~l  209 (325)
                      .|.....++++.+-... ....+++++..+++.|++.     ++||||-.+..+
T Consensus       119 ~q~~d~~~~~~~itk~s-~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv  171 (566)
T PRK07282        119 FQEADIVGITMPITKYN-YQIRETADIPRIITEAVHIATTGRPGPVVIDLPKDV  171 (566)
T ss_pred             ccccChhchhcCCCcee-EEcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCChhh
Confidence            22122237888775433 3445778888787777763     589999877654

>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins

Probab=92.43  E-value=4.2  Score=34.62  Aligned_cols=109  Identities=15%  Similarity=0.080  Sum_probs=65.8

Q ss_pred             ceeechhhHHHHHHHHHHHhccCCeeEEe--cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCC
Q 020510           85 RVLDTPITEAGFTGIGVGAAYYGLKPVVE--FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA  160 (325)
Q Consensus        85 R~i~~GIaE~~~vg~A~GlA~~G~~p~v~--~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~  160 (325)
                      ||+.+ -.|+++..+|.|.|+.. +|-++  +..+ .+.-+..-+.+.  +.       ...|++++.......  +.+.
T Consensus        37 ~~i~~-rhE~~A~~mA~gyar~t-~~gv~~~t~Gp-G~~n~~~gl~~A--~~-------~~~Pvl~i~g~~~~~~~~~~~  104 (162)
T cd07038          37 RWVGN-CNELNAGYAADGYARVK-GLGALVTTYGV-GELSALNGIAGA--YA-------EHVPVVHIVGAPSTKAQASGL  104 (162)
T ss_pred             eEEee-CCHHHHHHHHHHHHHhh-CCEEEEEcCCc-cHHHHHHHHHHH--HH-------cCCCEEEEecCCCcccccccc
Confidence            55554 89999999999999886 34333  3333 344455656542  21       579999886532221  2211


Q ss_pred             -Cc-----c-hHH-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEeC
Q 020510          161 -QH-----S-HCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLEN  206 (325)
Q Consensus       161 -tH-----s-~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~ir~~  206 (325)
                       .|     . +.+ .++++.+-.. .+...+++++..+++.|++    .++||+|-.+
T Consensus       105 ~~~~~~~~~~~~d~~~~~~~~tk~-~~~v~~~~~i~~~v~~A~~~a~s~~gPV~l~iP  161 (162)
T cd07038         105 LLHHTLGDGDFDVFLKMFEEITCA-AARLTDPENAAEEIDRVLRTALRESRPVYIEIP  161 (162)
T ss_pred             ceeecccccchHHHHHHHHhheeE-EEEeCCHHHHHHHHHHHHHHHHHCCCCEEEEcc
Confidence             12     1 123 4788777442 3444677777777777776    3689998543

Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many

>PRK08327 acetolactate synthase catalytic subunit; Validated

Probab=92.28  E-value=4.7  Score=41.45  Aligned_cols=113  Identities=13%  Similarity=0.060  Sum_probs=69.8

Q ss_pred             ceeechhhHHHHHHHHHHHhccCCe-eEEe-cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCC---
Q 020510           85 RVLDTPITEAGFTGIGVGAAYYGLK-PVVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVG---  159 (325)
Q Consensus        85 R~i~~GIaE~~~vg~A~GlA~~G~~-p~v~-~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G---  159 (325)
                      |||.+ -.|+++..+|-|.|+..-+ .++. +..+ .+.-+.--|.+  |+.       .+.||+++..+-.....+   
T Consensus        52 ~~V~~-rhE~~A~~~Adgyar~tgk~gv~~~t~GP-G~~N~~~gla~--A~~-------d~~Pvl~I~G~~~~~~~~~~~  120 (569)
T PRK08327         52 EFVIC-PHEIVAISMAHGYALVTGKPQAVMVHVDV-GTANALGGVHN--AAR-------SRIPVLVFAGRSPYTEEGELG  120 (569)
T ss_pred             cEEec-CCHHHHHHHHHHHHHhhCCCeEEEEecCH-HHHHHHHHHHH--Hhh-------cCCCEEEEeccCCcccccccc
Confidence            77776 8899999999999988443 3333 3434 34444444433  332       589998875432111111   


Q ss_pred             ----CCc-chH--HH-HHHhcCCCcEEEeeCCHHHHHHHHHHhHh-----CCCcEEEEeCccc
Q 020510          160 ----AQH-SHC--YA-AWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELL  209 (325)
Q Consensus       160 ----~tH-s~~--~~-a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~ir~~~~l  209 (325)
                          ..| .|.  +. .+++.+-. ..+...+++++...++.|++     .++||||..+..+
T Consensus       121 ~~~~~~~~~qe~~d~~~~~~~vtk-~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~i~iP~Dv  182 (569)
T PRK08327        121 SRNTRIHWTQEMRDQGGLVREYVK-WDYEIRRGDQIGEVVARAIQIAMSEPKGPVYLTLPREV  182 (569)
T ss_pred             ccccCcccchhhhhHHHHHhhhhh-hhcccCCHHHHHHHHHHHHHHHhcCCCCCEEEECcHHH
Confidence                011 133  33 78887643 34566778888888887776     2589999877554

>PRK06456 acetolactate synthase catalytic subunit; Reviewed

Probab=92.16  E-value=1.7  Score=44.70  Aligned_cols=113  Identities=17%  Similarity=0.071  Sum_probs=70.6

Q ss_pred             ceeechhhHHHHHHHHHHHhcc-CCeeEEe-cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCC
Q 020510           85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA  160 (325)
Q Consensus        85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~-~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~  160 (325)
                      |||.+ ..|+++..+|.|.|+. |...++. +..+..++ ++--|.+  |+.       .++||+++.......  +.+.
T Consensus        45 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N-~l~gi~~--A~~-------~~~Pvl~i~G~~~~~~~~~~~  113 (572)
T PRK06456         45 RHVLM-RHEQAAAHAADGYARASGVPGVCTATSGPGTTN-LVTGLIT--AYW-------DSSPVIAITGQVPRSVMGKMA  113 (572)
T ss_pred             eEEEe-CcHHHHHHHHHHHHHhhCCCEEEEeCCCCCHHH-HHHHHHH--HHh-------hCCCEEEEecCCCccccCCCC
Confidence            57775 8999999999999988 5433333 45454444 5555544  332       589998886432222  2222


Q ss_pred             CcchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHh-----CCCcEEEEeCccc
Q 020510          161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELL  209 (325)
Q Consensus       161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~ir~~~~l  209 (325)
                      .+.....++++.+--.. +...+++++...++.|++     .++||||-.+..+
T Consensus       114 ~q~~d~~~i~~~~tk~~-~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv  166 (572)
T PRK06456        114 FQEADAMGVFENVTKYV-IGIKRIDEIPQWIKNAFYIATTGRPGPVVIDIPRDI  166 (572)
T ss_pred             ccccchhhhhhccceeE-EEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecChhH
Confidence            22112247888876533 334678888887777776     2589999877654

>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation

Probab=91.96  E-value=2.4  Score=36.63  Aligned_cols=111  Identities=20%  Similarity=0.128  Sum_probs=63.9

Q ss_pred             CCceeechh--hHHHHHHHHHHHhcc-CCeeEEecccccH-HHHHHHHHHHHHhhccccCCCCccCCEEEEe--CCCCCC
Q 020510           83 PERVLDTPI--TEAGFTGIGVGAAYY-GLKPVVEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAAA  156 (325)
Q Consensus        83 p~R~i~~GI--aE~~~vg~A~GlA~~-G~~p~v~~~~~~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~--~~G~~~  156 (325)
                      |.+|+..+-  +=-..+..|.|++++ .-++++++. .+. .+.....+.. +..        .++|++++.  .++...
T Consensus        38 ~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~-GDG~f~m~~~eL~t-a~~--------~~l~vi~vV~NN~~~g~  107 (177)
T cd02010          38 PNTCLISNGLATMGVALPGAIGAKLVYPDRKVVAVS-GDGGFMMNSQELET-AVR--------LKIPLVVLIWNDNGYGL  107 (177)
T ss_pred             CCCEEeCCCChhhhhHHHHHHHHHHhCCCCcEEEEE-cchHHHhHHHHHHH-HHH--------HCCCeEEEEEECCcchH
Confidence            688887532  112344577777765 356676665 442 2223333333 332        467766653  223221


Q ss_pred             C-------CCC-Cc---ch-HHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510          157 G-------VGA-QH---SH-CYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL  204 (325)
Q Consensus       157 g-------~G~-tH---s~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir  204 (325)
                      -       .+. .+   .. ++.++.+.+ |++-+...+++|+...++++++.++|.+|-
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie  166 (177)
T cd02010         108 IKWKQEKEYGRDSGVDFGNPDFVKYAESF-GAKGYRIESADDLLPVLERALAADGVHVID  166 (177)
T ss_pred             HHHHHHHhcCCcccCcCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence            0       000 01   01 223555555 677788899999999999999989999985

ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.

>TIGR01504 glyox_carbo_lig glyoxylate carboligase

Probab=91.72  E-value=4.6  Score=41.74  Aligned_cols=112  Identities=16%  Similarity=0.045  Sum_probs=70.2

Q ss_pred             ceeechhhHHHHHHHHHHHhccC-CeeEEe--cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCC
Q 020510           85 RVLDTPITEAGFTGIGVGAAYYG-LKPVVE--FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG  159 (325)
Q Consensus        85 R~i~~GIaE~~~vg~A~GlA~~G-~~p~v~--~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G  159 (325)
                      |||.+ -.|++++.+|-|.|+.. .+|-++  +..+.+++ ++--+.+  |+.       .+.||+++...-.+.  +.+
T Consensus        43 ~~V~~-rhE~~A~~mAdgyaR~t~g~~gv~~~t~GpG~~N-~~~gla~--A~~-------~~~Pvl~I~G~~~~~~~~~~  111 (588)
T TIGR01504        43 RHILA-RHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTD-MITGLYS--ASA-------DSIPILCITGQAPRARLHKE  111 (588)
T ss_pred             cEEee-CCHHHHHHHHHHHHHhcCCCeEEEEECCCccHHH-HHHHHHH--Hhh-------cCCCEEEEecCCCccccCCC
Confidence            67664 78999999999999864 444333  44444333 4444543  322       589998886432222  222


Q ss_pred             CCcchH--HHHHHhcCCCcEEEeeCCHHHHHHHHHHhHh-----CCCcEEEEeCcccc
Q 020510          160 AQHSHC--YAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELLY  210 (325)
Q Consensus       160 ~tHs~~--~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~ir~~~~l~  210 (325)
                      . + |.  ..++++.+--. .+...+++++...++.|++     .++||||-.+..+.
T Consensus       112 ~-~-q~~D~~~~~~~vtk~-~~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv~  166 (588)
T TIGR01504       112 D-F-QAVDIAAIAKPVSKM-AVTVREAALVPRVLQQAFHLMRSGRPGPVLIDLPFDVQ  166 (588)
T ss_pred             c-c-cccCHHHHhhhhceE-EEEcCCHHHHHHHHHHHHHHHccCCCCeEEEEeCcchh
Confidence            2 3 33  24788887543 3444678888888888876     24799998776543

Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.

>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD)

Probab=91.52  E-value=2.4  Score=36.54  Aligned_cols=113  Identities=15%  Similarity=0.162  Sum_probs=62.6

Q ss_pred             hCCCcee-echhhH-HHHHHHHHHHhccCCeeEEecccccH-HHHHHHHHHHHHhhccccCCCCccCCEEEEeC-CCCCC
Q 020510           81 YGPERVL-DTPITE-AGFTGIGVGAAYYGLKPVVEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAA  156 (325)
Q Consensus        81 ~gp~R~i-~~GIaE-~~~vg~A~GlA~~G~~p~v~~~~~~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~~  156 (325)
                      ..|.+|+ +.|..- -..++.|.|++++--+|++++. .+. .+.....+-. +.        +.++|++++.- ++.++
T Consensus        39 ~~~~~~~~~~g~g~mG~~l~~aiGa~la~~~~Vv~i~-GDGsf~m~~~eL~t-a~--------~~~l~v~ivVlNN~~~g  108 (175)
T cd02009          39 DKTVRVFANRGASGIDGTLSTALGIALATDKPTVLLT-GDLSFLHDLNGLLL-GK--------QEPLNLTIVVINNNGGG  108 (175)
T ss_pred             CCCceEEecCCccchhhHHHHHHHHHhcCCCCEEEEE-ehHHHHHhHHHHHh-cc--------ccCCCeEEEEEECCCCc
Confidence            3377888 434322 1345677776655456777665 443 2222222322 22        24677666542 22211


Q ss_pred             --C--C----CC---C-----cchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510          157 --G--V----GA---Q-----HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL  204 (325)
Q Consensus       157 --g--~----G~---t-----Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir  204 (325)
                        .  .    +.   .     +.-.+.++.+++ |+.-+...+++|+...++++++.++|.+|-
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lIe  171 (175)
T cd02009         109 IFSLLPQASFEDEFERLFGTPQGLDFEHLAKAY-GLEYRRVSSLDELEQALESALAQDGPHVIE  171 (175)
T ss_pred             hheeccCCcccchhhhhhcCCCCCCHHHHHHHc-CCCeeeCCCHHHHHHHHHHHHhCCCCEEEE
Confidence              0  0    00   0     111223555555 566777789999999999999988999873

SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.

>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional

Probab=91.40  E-value=3.9  Score=38.30  Aligned_cols=145  Identities=19%  Similarity=0.160  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccC-CeeEEecccc
Q 020510           39 VREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG-LKPVVEFMTF  117 (325)
Q Consensus        39 ~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G-~~p~v~~~~~  117 (325)
                      .-.++.++|.++....++.+++ .|++-++    ....+.+-+    .+.. .- -.++.+|.|++++. -++++.+. .
T Consensus        18 il~al~~al~~l~~~~~~~ivv-sdiGc~~----~~~~~~~~~----~~~~-~~-G~alp~A~GaklA~Pd~~VV~i~-G   85 (279)
T PRK11866         18 ILEALRKALAELGIPPENVVVV-SGIGCSS----NLPEFLNTY----GIHG-IH-GRVLPIATGVKWANPKLTVIGYG-G   85 (279)
T ss_pred             HHHHHHHHHHHhcCCCCCEEEE-ECCchhh----hhhhhccCC----Cccc-cc-ccHHHHHHHHHHHCCCCcEEEEE-C
Confidence            4566677776654445565555 4666322    111121111    1121 11 45567778877763 35666555 4


Q ss_pred             cH--HHHHHHHHHHHHhhccccCCCCccCCEEEEeC-C---CCCCC-C------CC----C-cc-----hHHHHHHh--c
Q 020510          118 NF--SMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N---GAAAG-V------GA----Q-HS-----HCYAAWYA--S  172 (325)
Q Consensus       118 ~f--~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~---G~~~g-~------G~----t-Hs-----~~~~a~~~--~  172 (325)
                      +.  ..-.+..+.+ +++        .++|++++.- +   |.+.+ .      |.    + ..     .++..+..  .
T Consensus        86 DG~~f~ig~~eL~t-A~r--------rn~~i~vIV~nN~~ygmtggQ~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G  156 (279)
T PRK11866         86 DGDGYGIGLGHLPH-AAR--------RNVDITYIVSNNQVYGLTTGQASPTTPRGVKTKTTPDGNIEEPFNPIALALAAG  156 (279)
T ss_pred             ChHHHHccHHHHHH-HHH--------HCcCcEEEEEEChhhhhhcccccCCCCCCceeeccCCCCCCCCCCHHHHHHHCC
Confidence            44  5566666765 343        4666655532 2   22221 1      00    0 00     02234444  4


Q ss_pred             CCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510          173 VPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL  204 (325)
Q Consensus       173 iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir  204 (325)
                      .+.+....+.++.|+...++.|++.++|++|-
T Consensus       157 ~~~Va~~~~~~~~~l~~~l~~Al~~~Gps~I~  188 (279)
T PRK11866        157 ATFVARGFSGDVKHLKEIIKEAIKHKGFSFID  188 (279)
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHHhCCCCEEEE
Confidence            55566677799999999999999999999985

>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family

Probab=91.05  E-value=5.4  Score=40.69  Aligned_cols=115  Identities=16%  Similarity=0.046  Sum_probs=65.6

Q ss_pred             ceeechhhHHHHHHHHHHHhcc-CCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCC-
Q 020510           85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA-  160 (325)
Q Consensus        85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~-  160 (325)
                      ||+. .-.|+++.-+|-|.|+. |...++.+.+.....-+.--|..  |+.       .++||+++...-...  +.+. 
T Consensus        40 ~~v~-~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gia~--A~~-------~~~Pvl~i~g~~~~~~~~~~~~  109 (535)
T TIGR03394        40 PLHT-LSHEPAVGFAADAAARYRGTLGVAAVTYGAGAFNMVNAIAG--AYA-------EKSPVVVISGAPGTTEGNAGLL  109 (535)
T ss_pred             eEEc-ccCcchHHHHHhHHHHhhCCceEEEEecchHHHhhhhHHHH--Hhh-------cCCCEEEEECCCCcccccCCce
Confidence            6777 48999999999999988 54444433323334444444433  332       589998886432221  2222 


Q ss_pred             CcchH----H-HHHHhcCCCcEEEeeCCHHHHH----HHHHHhHhCCCcEEEEeCcccc
Q 020510          161 QHSHC----Y-AAWYASVPGLKVLSPYSSEDAR----GLLKAAIRDPDPVVFLENELLY  210 (325)
Q Consensus       161 tHs~~----~-~a~~~~iP~~~V~~P~d~~e~~----~~l~~a~~~~~Pv~ir~~~~l~  210 (325)
                      +|.|.    + ..+++.+-.. .....++.++.    ++++.|...++||||-.++.+.
T Consensus       110 ~~~~~~~~~~~~~~~~~vtk~-~~~v~~~~~~~~~~~~A~~~a~~~~gPv~i~iP~Dv~  167 (535)
T TIGR03394       110 LHHQGRTLDSQFQVFKEVTCD-QAVLDDPATAPAEIARVLGSARELSRPVYLEIPRDMV  167 (535)
T ss_pred             eEeeccchHHHHHhhhhheEE-EEEeCChHHhHHHHHHHHHHHHHCCCCEEEEechhhc
Confidence            22232    2 2677766432 22234444444    4555555567899998776543

A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.

>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS

Probab=91.02  E-value=3.8  Score=35.54  Aligned_cols=111  Identities=21%  Similarity=0.166  Sum_probs=63.6

Q ss_pred             CCceeechh-h-HHHHHHHHHHHhccC-CeeEEecccccH-HHHHHHHHHHHHhhccccCCCCccCCEEEEeC-CCCCC-
Q 020510           83 PERVLDTPI-T-EAGFTGIGVGAAYYG-LKPVVEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAA-  156 (325)
Q Consensus        83 p~R~i~~GI-a-E~~~vg~A~GlA~~G-~~p~v~~~~~~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~~-  156 (325)
                      |.+|+..+- . =-..++.|.|++++. -+++++.. .+. .+.....+-. ++.        .++|++++.. ++.++ 
T Consensus        40 ~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~-GDG~f~~~~~eL~t-a~~--------~~lpi~ivV~nN~~~~~  109 (186)
T cd02015          40 PRSWLTSGGLGTMGFGLPAAIGAKVARPDKTVICID-GDGSFQMNIQELAT-AAQ--------YNLPVKIVILNNGSLGM  109 (186)
T ss_pred             CCeEEeCCCccchhchHHHHHHHHHhCCCCeEEEEE-cccHHhccHHHHHH-HHH--------hCCCeEEEEEECCccHH
Confidence            788887532 1 122556777777663 35666554 432 2223333433 343        4678766543 22211 


Q ss_pred             ----------C-CC-CCc-ch-HHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510          157 ----------G-VG-AQH-SH-CYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL  204 (325)
Q Consensus       157 ----------g-~G-~tH-s~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir  204 (325)
                                + .. ... .. .+..+.+++ |+.-....+..|+...++.+++.++|++|-
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie  170 (186)
T cd02015         110 VRQWQELFYEGRYSHTTLDSNPDFVKLAEAY-GIKGLRVEKPEELEAALKEALASDGPVLLD  170 (186)
T ss_pred             HHHHHHHHcCCceeeccCCCCCCHHHHHHHC-CCceEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence                      0 00 111 11 223566665 667777788999999999999988999984

AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.

>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria

Probab=90.54  E-value=9.7  Score=34.59  Aligned_cols=37  Identities=22%  Similarity=0.110  Sum_probs=28.9

Q ss_pred             HHHhcC--CCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510          168 AWYASV--PGLKVLSPYSSEDARGLLKAAIRDPDPVVFL  204 (325)
Q Consensus       168 a~~~~i--P~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir  204 (325)
                      .+.++.  +.+..+...+++|+..+++.+++.++|++|-
T Consensus       158 ~iA~a~G~~~~~~~~v~~~~el~~al~~a~~~~gP~lIe  196 (235)
T cd03376         158 LIMAAHNIPYVATASVAYPEDLYKKVKKALSIEGPAYIH  196 (235)
T ss_pred             HHHHHcCCcEEEEEcCCCHHHHHHHHHHHHhCCCCEEEE
Confidence            455554  3443467899999999999999999999884

PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.

>PRK08979 acetolactate synthase 3 catalytic subunit; Validated

Probab=90.42  E-value=11  Score=38.76  Aligned_cols=113  Identities=20%  Similarity=0.081  Sum_probs=70.5

Q ss_pred             ceeechhhHHHHHHHHHHHhcc-CCeeEEe-cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCC
Q 020510           85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA  160 (325)
Q Consensus        85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~-~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~  160 (325)
                      |+|.+ -.|++++.+|.|.|+. |...++. +..+.+++ +.--+.+  |+       ...+||+++.......  +.+.
T Consensus        44 ~~v~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n-~l~gia~--A~-------~~~~Pvl~i~G~~~~~~~~~~~  112 (572)
T PRK08979         44 EHILV-RHEQAAVHMADGYARATGKVGVVLVTSGPGATN-TITGIAT--AY-------MDSIPMVVLSGQVPSNLIGNDA  112 (572)
T ss_pred             eEEEe-CcHHHHHHHHHHHHHHhCCCeEEEECCCchHhH-HHHHHHH--Hh-------hcCCCEEEEecCCCccccCCCC
Confidence            67776 8999999999999987 6444433 44444333 4444433  22       2589998876432221  2233


Q ss_pred             CcchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHh-----CCCcEEEEeCccc
Q 020510          161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELL  209 (325)
Q Consensus       161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~ir~~~~l  209 (325)
                      .+.....++++.+-.. .....+++++...++.|++     .++||||-.+..+
T Consensus       113 ~q~~d~~~~~~~itk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv  165 (572)
T PRK08979        113 FQECDMIGISRPVVKH-SFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLPKDC  165 (572)
T ss_pred             CcccchhHHhhhceeE-EEecCCHHHHHHHHHHHHHHHhCCCCCcEEEecCHhH
Confidence            2211224788877542 3445578888888888876     2589999876553

>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase

Probab=89.88  E-value=4.6  Score=41.27  Aligned_cols=113  Identities=14%  Similarity=0.072  Sum_probs=70.3

Q ss_pred             ceeechhhHHHHHHHHHHHhcc-CCeeEEe-cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCC-
Q 020510           85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG-  159 (325)
Q Consensus        85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~-~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G-  159 (325)
                      |++.+ -.|+++..+|-|.|+. |...++. +..+.+++ +.--+.+  |+.       .+.||+++.......  +.+ 
T Consensus        42 ~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N-~~~gia~--A~~-------~~~Pvl~I~G~~~~~~~~~~~  110 (554)
T TIGR03254        42 RYIGF-RHEQSAGYAAAAAGFLTQKPGVCLTVSAPGFLN-GLTALAN--ATT-------NCFPMIMISGSSERHIVDLQQ  110 (554)
T ss_pred             cEEEe-CCHHHHHHHHHHHHHHhCCCEEEEEccCccHHh-HHHHHHH--HHh-------cCCCEEEEEccCCccccccCC
Confidence            67775 8999999999999987 5433333 33444433 4444543  332       589988875332211  111 


Q ss_pred             CCcchH--HHHHHhcCCCcEEEeeCCHHHHHHHHHHhHh-----CCCcEEEEeCcccc
Q 020510          160 AQHSHC--YAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELLY  210 (325)
Q Consensus       160 ~tHs~~--~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~ir~~~~l~  210 (325)
                      ..+ |.  ..++++.+-. ..+...++.++...++.|++     .++||||-.+..+.
T Consensus       111 ~~~-q~~d~~~~~~~vtk-~~~~v~~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~Dv~  166 (554)
T TIGR03254       111 GDY-EEMDQLAAAKPFAK-AAYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLPAAVL  166 (554)
T ss_pred             CCc-chhhHHHHhhhhhe-eEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHHHh
Confidence            123 43  2488888754 35566678888777777765     25789998776543

In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.

>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv

Probab=89.75  E-value=5.2  Score=35.36  Aligned_cols=37  Identities=24%  Similarity=0.207  Sum_probs=30.6

Q ss_pred             HHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510          167 AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL  204 (325)
Q Consensus       167 ~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir  204 (325)
                      .++.+++ |+..+...+++|+...++.+++.++|++|-
T Consensus       144 ~~~A~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lIe  180 (205)
T cd02003         144 AANARSL-GARVEKVKTIEELKAALAKAKASDRTTVIV  180 (205)
T ss_pred             HHHHHhC-CCEEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence            3566665 677777899999999999999989999884

viciae IolD. IolD plays an important role in myo-inositol catabolism.

>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions

Probab=89.71  E-value=11  Score=32.39  Aligned_cols=112  Identities=19%  Similarity=0.219  Sum_probs=64.5

Q ss_pred             HhCCCceeechh-hHH-HHHHHHHHHhccC-CeeEEeccccc--HHHHHHHHHHHHHhhccccCCCCccCCEEEEeC-CC
Q 020510           80 KYGPERVLDTPI-TEA-GFTGIGVGAAYYG-LKPVVEFMTFN--FSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NG  153 (325)
Q Consensus        80 ~~gp~R~i~~GI-aE~-~~vg~A~GlA~~G-~~p~v~~~~~~--f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G  153 (325)
                      +. |.+|+..+. .=. .+++.|.|++++. .++++++. .+  |++-..| +.+ +..        .++|++++.- ++
T Consensus        39 ~~-~~~~~~~~~~g~mG~~~~~aiGa~~a~~~~~vv~i~-GDG~f~~~~~e-l~t-~~~--------~~lp~~~iv~NN~  106 (178)
T cd02014          39 NG-KQRFILSGLLATMGNGLPGAIAAKLAYPDRQVIALS-GDGGFAMLMGD-LIT-AVK--------YNLPVIVVVFNNS  106 (178)
T ss_pred             CC-CCcEEcCCCCchhhhHHHHHHHHHHhCCCCcEEEEE-cchHHHhhHHH-HHH-HHH--------hCCCcEEEEEECC
Confidence            44 678887543 221 2555677776654 35555554 43  2333333 433 343        4677655532 22


Q ss_pred             -CCC--------C---CCCC-cchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510          154 -AAA--------G---VGAQ-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL  204 (325)
Q Consensus       154 -~~~--------g---~G~t-Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir  204 (325)
                       ...        +   .+.. +...+..+..+. |++.+...++.|++..++.+++.++|++|-
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~~l~~a~~~~~p~lie  169 (178)
T cd02014         107 DLGFIKWEQEVMGQPEFGVDLPNPDFAKIAEAM-GIKGIRVEDPDELEAALDEALAADGPVVID  169 (178)
T ss_pred             chhHHHHHHHHhcCCceeccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence             211        1   1111 112334566666 788888999999999999999988999884

POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.

>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed

Probab=89.70  E-value=4.1  Score=42.28  Aligned_cols=114  Identities=17%  Similarity=0.065  Sum_probs=70.4

Q ss_pred             ceeechhhHHHHHHHHHHHhcc-CCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCCC
Q 020510           85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQ  161 (325)
Q Consensus        85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~t  161 (325)
                      |||.+ -.|++++.+|.|.|+. |...++.+.+...+.-++--+.+  |+.       -++||+++.......  +.+..
T Consensus        62 ~~i~~-rhE~~Aa~aA~gyar~tgk~gv~~~t~GPG~~n~l~gl~~--A~~-------d~~Pvl~i~G~~~~~~~~~~~~  131 (616)
T PRK07418         62 KHILV-RHEQGAAHAADGYARATGKVGVCFGTSGPGATNLVTGIAT--AQM-------DSVPMVVITGQVPRPAIGTDAF  131 (616)
T ss_pred             eEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHH--HHh-------cCCCEEEEecCCCccccCCCCc
Confidence            78886 9999999999999977 54444333323334434444433  332       589999886432222  22222


Q ss_pred             cchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----C-CCcEEEEeCccc
Q 020510          162 HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELL  209 (325)
Q Consensus       162 Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~-~~Pv~ir~~~~l  209 (325)
                      +......+++.+-- -.....+++++..+++.|++    . ++||||..+..+
T Consensus       132 Qe~d~~~~~~~vtk-~~~~v~~~~~i~~~l~~A~~~A~~~~~GPv~l~iP~Dv  183 (616)
T PRK07418        132 QETDIFGITLPIVK-HSYVVRDPSDMARIVAEAFHIASSGRPGPVLIDIPKDV  183 (616)
T ss_pred             ccccHHHHhhhcce-eEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecchhh
Confidence            21122378876642 23346788888888888777    2 489999877654

>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit

Probab=89.53  E-value=8.5  Score=33.44  Aligned_cols=143  Identities=17%  Similarity=0.150  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHH-HhCCCceeechhhHHHHHHHHHHHhccCCeeEEeccccc
Q 020510           40 REALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLE-KYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFN  118 (325)
Q Consensus        40 ~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~-~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~~~~  118 (325)
                      |+++.++|.+.+.  ..+++.  |.+.+.      ..+.. ...|.+|+..|--=. .++.|.|++++--+|++++. .+
T Consensus         1 ~~~~~~~l~~~l~--d~iiv~--d~G~~~------~~~~~~~~~~~~~~~~gsmG~-~lpaAiGa~la~~~~Vv~i~-GD   68 (181)
T TIGR03846         1 RIDAIRAIASYLE--DELVVS--NIGVPS------KELYAIRDRPLNFYMLGSMGL-ASSIGLGLALATDRTVIVID-GD   68 (181)
T ss_pred             CHHHHHHHHHhCC--CCEEEe--cCCHhH------HHHHhhhcCCCCeeecccccc-HHHHHHHHHHcCCCcEEEEE-cc
Confidence            4567777777773  344443  444321      12222 122778886432111 23477777765456777665 44


Q ss_pred             H-HHHHHHHHHHHHhhccccCCCCcc-CCEEEEeC-CCCCCCCC-----CCcchHHHHHHhcCCCcEEEe-eCCHHHHHH
Q 020510          119 F-SMQAIDHIINSAAKSNYMSSGQIS-VPIVFRGP-NGAAAGVG-----AQHSHCYAAWYASVPGLKVLS-PYSSEDARG  189 (325)
Q Consensus       119 f-~~ra~dqi~~~~a~~~~~~~~~~~-~pvv~~~~-~G~~~g~G-----~tHs~~~~a~~~~iP~~~V~~-P~d~~e~~~  189 (325)
                      . ++.....+- .++.        .+ .|++++.- ++.++-.+     .++.-.+.++.+++ |+.-.. ..+++|+..
T Consensus        69 G~f~m~~~el~-ta~~--------~~~~pv~~vV~NN~~yg~~~~q~~~~~~~~d~~~lA~a~-G~~~~~~v~~~~~l~~  138 (181)
T TIGR03846        69 GSLLMNLGVLP-TIAA--------ESPKNLILVILDNGAYGSTGNQPTPASRRTDLELVAKAA-GIRNVEKVADEEELRD  138 (181)
T ss_pred             hHHHhhhhHHH-HHHH--------hCCCCeEEEEEeCCccccccCcCCCCCCCCCHHHHHHHC-CCCeEEEeCCHHHHHH
Confidence            3 232333332 2332        34 47655542 22221111     11111234566655 455455 789999999


Q ss_pred             HHHHhHhCCCcEEEEe
Q 020510          190 LLKAAIRDPDPVVFLE  205 (325)
Q Consensus       190 ~l~~a~~~~~Pv~ir~  205 (325)
                      .++ +++.++|.+|-.
T Consensus       139 al~-a~~~~~p~li~v  153 (181)
T TIGR03846       139 ALK-ALAMKGPTFIHV  153 (181)
T ss_pred             HHH-HHcCCCCEEEEE
Confidence            997 888889998853

Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).

>CHL00099 ilvB acetohydroxyacid synthase large subunit

Probab=89.35  E-value=4.8  Score=41.50  Aligned_cols=113  Identities=16%  Similarity=0.038  Sum_probs=68.8

Q ss_pred             ceeechhhHHHHHHHHHHHhcc-CCeeEE-ecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCC--CCC
Q 020510           85 RVLDTPITEAGFTGIGVGAAYY-GLKPVV-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAG--VGA  160 (325)
Q Consensus        85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~v-~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g--~G~  160 (325)
                      ||+.+ ..|+++..+|.|.|+. |...++ .+..+.. .-++--|.+  |+.       .+.||+++........  .+.
T Consensus        53 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~-~N~l~gl~~--A~~-------~~~Pvl~I~G~~~~~~~~~~~  121 (585)
T CHL00099         53 KHILV-RHEQGAAHAADGYARSTGKVGVCFATSGPGA-TNLVTGIAT--AQM-------DSVPLLVITGQVGRAFIGTDA  121 (585)
T ss_pred             eEEEe-cCHHHHHHHHHHHHHhcCCcEEEEECCCCcH-HHHHHHHHH--Hhh-------cCCCEEEEecCCCccccCCCC
Confidence            56774 8999999999999987 544343 3444433 334444433  332       6899988864322222  222


Q ss_pred             CcchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhC-----CCcEEEEeCccc
Q 020510          161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL  209 (325)
Q Consensus       161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~ir~~~~l  209 (325)
                      .+.....++++.+-. -.....+++++..+++.|++.     ++||||..+..+
T Consensus       122 ~q~~d~~~~~~~~tk-~~~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv  174 (585)
T CHL00099        122 FQEVDIFGITLPIVK-HSYVVRDARDISRIVAEAFYIAKHGRPGPVLIDIPKDV  174 (585)
T ss_pred             ccccchhhhhcCcee-EEEEeCCHHHHHHHHHHHHHHHccCCCCeEEEecChhh
Confidence            221122367776532 244556888888888887762     479999877554

>PRK06276 acetolactate synthase catalytic subunit; Reviewed

Probab=89.15  E-value=4  Score=42.14  Aligned_cols=111  Identities=16%  Similarity=0.061  Sum_probs=69.6

Q ss_pred             ceeechhhHHHHHHHHHHHhcc-CCeeEE-ecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCC
Q 020510           85 RVLDTPITEAGFTGIGVGAAYY-GLKPVV-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA  160 (325)
Q Consensus        85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~v-~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~  160 (325)
                      ||+.+ ..|++++.+|.|.|+. |...++ .+..+.+ .-++--|.+  |+.       .++||+++...-...  +.+.
T Consensus        40 ~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GPG~-~n~l~~i~~--A~~-------~~~Pvl~I~G~~~~~~~~~~~  108 (586)
T PRK06276         40 IHILT-RHEQAAAHAADGYARASGKVGVCVATSGPGA-TNLVTGIAT--AYA-------DSSPVIALTGQVPTKLIGNDA  108 (586)
T ss_pred             cEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccH-HHHHHHHHH--HHh-------cCCCEEEEeCCCCccccCCCC
Confidence            67776 7999999999999987 543333 3444443 334555544  222       689998876432221  2222


Q ss_pred             CcchH-H-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHhC-----CCcEEEEeCccc
Q 020510          161 QHSHC-Y-AAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL  209 (325)
Q Consensus       161 tHs~~-~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~ir~~~~l  209 (325)
                       + |. + .++++.+-.. .+.-.+++++...++.|++.     ++||||-.+..+
T Consensus       109 -~-q~~d~~~l~~~~tk~-s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv  161 (586)
T PRK06276        109 -F-QEIDALGIFMPITKH-NFQIKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKDV  161 (586)
T ss_pred             -C-ccccHhhHHhhhcce-EEecCCHHHHHHHHHHHHHHhcCCCCCcEEEEcChhH
Confidence             3 32 2 3788877543 33446777888778777763     589999877554

>PRK06154 hypothetical protein; Provisional

Probab=88.95  E-value=8.4  Score=39.60  Aligned_cols=149  Identities=19%  Similarity=0.103  Sum_probs=86.7

Q ss_pred             ccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-C-CeeEE
Q 020510           35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-G-LKPVV  112 (325)
Q Consensus        35 ~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~-G-~~p~v  112 (325)
                      +.++..+++.+.|.++   +-+.|+--+  .    . .+.+.+.+ - .=|||.+ -.|++++.+|.|.|+. | -+|-+
T Consensus        18 ~~~~~a~~l~~~L~~~---GV~~vFGip--~----~-~l~dal~~-~-~i~~i~~-rhE~~A~~mAdgyar~t~g~~~gv   84 (565)
T PRK06154         18 KTMKVAEAVAEILKEE---GVELLFGFP--V----N-ELFDAAAA-A-GIRPVIA-RTERVAVHMADGYARATSGERVGV   84 (565)
T ss_pred             CcccHHHHHHHHHHHc---CCCEEEeCc--C----H-HHHHHHHh-c-CCeEEee-CcHHHHHHHHHHHHHhcCCCCCEE
Confidence            4455567777766653   445555433  1    1 22344533 2 2477775 8999999999999986 3 34433


Q ss_pred             --ecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCCCcchHHHHHHhcCCCcEEEeeCCHHHHH
Q 020510          113 --EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQHSHCYAAWYASVPGLKVLSPYSSEDAR  188 (325)
Q Consensus       113 --~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~  188 (325)
                        .+..+.+++ +.--+.+  |+.       .+.||+++.......  +.+..+.+  ..+++.+-. -.....+++++.
T Consensus        85 ~~~t~GPG~~N-~~~gla~--A~~-------~~~Pvl~i~G~~~~~~~~~~~~~d~--~~~~~~vtk-~~~~v~~~~~~~  151 (565)
T PRK06154         85 FAVQYGPGAEN-AFGGVAQ--AYG-------DSVPVLFLPTGYPRGSTDVAPNFES--LRNYRHITK-WCEQVTLPDEVP  151 (565)
T ss_pred             EEECCCccHHH-HHHHHHH--Hhh-------cCCCEEEEeCCCCcccccCCCCcch--hhhHhhcce-eEEECCCHHHHH
Confidence              345454433 4444433  332       589999885422111  12222312  367777654 345667888888


Q ss_pred             HHHHHhHh-----CCCcEEEEeCccc
Q 020510          189 GLLKAAIR-----DPDPVVFLENELL  209 (325)
Q Consensus       189 ~~l~~a~~-----~~~Pv~ir~~~~l  209 (325)
                      ..++.|++     .++||||-.+..+
T Consensus       152 ~~i~~A~~~A~s~~~GPV~l~iP~Dv  177 (565)
T PRK06154        152 ELMRRAFTRLRNGRPGPVVLELPVDV  177 (565)
T ss_pred             HHHHHHHHHHhcCCCceEEEecchHH
Confidence            77777776     2589999877554

>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor

Probab=88.89  E-value=4.3  Score=33.99  Aligned_cols=99  Identities=20%  Similarity=0.183  Sum_probs=57.1

Q ss_pred             HHHHHHHHHhccC-CeeEEecccccH-HHHHHHHHHHHHhhccccCCCCccCCEEEEeC-CCCCCCCC------------
Q 020510           95 GFTGIGVGAAYYG-LKPVVEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAGVG------------  159 (325)
Q Consensus        95 ~~vg~A~GlA~~G-~~p~v~~~~~~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~~g~G------------  159 (325)
                      ..++.|.|+++.. -++++++. .+. ++..++.+.. +..        .++|++++.. ++...-.+            
T Consensus        50 ~~~~~a~Gaa~a~~~~~vv~~~-GDG~~~~~~~~l~t-a~~--------~~~~~~~iv~nN~~~~~~~~~~~~~~~~~~~  119 (168)
T cd00568          50 YGLPAAIGAALAAPDRPVVCIA-GDGGFMMTGQELAT-AVR--------YGLPVIVVVFNNGGYGTIRMHQEAFYGGRVS  119 (168)
T ss_pred             hhHHHHHHHHHhCCCCcEEEEE-cCcHHhccHHHHHH-HHH--------cCCCcEEEEEECCccHHHHHHHHHHcCCCcc
Confidence            3445777777664 24445444 443 2234454433 332        4677666543 23221000            


Q ss_pred             -CC-cchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510          160 -AQ-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL  204 (325)
Q Consensus       160 -~t-Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir  204 (325)
                       .. +...+.+++++. |+......++.|+...++++.+.++|++|.
T Consensus       120 ~~~~~~~d~~~~a~~~-G~~~~~v~~~~~l~~a~~~a~~~~~p~~i~  165 (168)
T cd00568         120 GTDLSNPDFAALAEAY-GAKGVRVEDPEDLEAALAEALAAGGPALIE  165 (168)
T ss_pred             cccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence             11 111334666665 777888889999999999999888999884

These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.

>PRK06112 acetolactate synthase catalytic subunit; Validated

Probab=88.75  E-value=5.3  Score=41.08  Aligned_cols=152  Identities=18%  Similarity=0.072  Sum_probs=85.6

Q ss_pred             ccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEe-
Q 020510           35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVE-  113 (325)
Q Consensus        35 ~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~-  113 (325)
                      ++++..+++.+.|.++   +-+.|+--. .    .. .+...+.+ - .=+++.+ ..|+++..+|.|.|+..-+|-++ 
T Consensus        12 ~~~~~a~~i~~~L~~~---GV~~vFG~~-~----~~-~~~~~~~~-~-~i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~   79 (578)
T PRK06112         12 LNGTVAHAIARALKRH---GVEQIFGQS-L----PS-ALFLAAEA-I-GIRQIAY-RTENAGGAMADGYARVSGKVAVVT   79 (578)
T ss_pred             cCcCHHHHHHHHHHHC---CCCEEeecc-c----ch-HhHHHHhh-c-CCcEEEe-ccHHHHHHHHHHHHHHhCCCEEEE
Confidence            4556677777777653   444444211 1    11 01122221 1 2367776 79999999999999874344333 


Q ss_pred             -cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCC-CCcchHH--HHHHhcCCCcEEEeeCCHHHHHH
Q 020510          114 -FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVG-AQHSHCY--AAWYASVPGLKVLSPYSSEDARG  189 (325)
Q Consensus       114 -~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G-~tHs~~~--~a~~~~iP~~~V~~P~d~~e~~~  189 (325)
                       +..+ .+.-++--|.+  |+.       .++||+++..+......+ ..+ |..  ..+++.+-- ......+++++..
T Consensus        80 ~t~Gp-G~~N~~~gl~~--A~~-------~~~Pvl~I~G~~~~~~~~~~~~-Q~~d~~~l~~~vtk-~~~~v~~~~~~~~  147 (578)
T PRK06112         80 AQNGP-AATLLVAPLAE--ALK-------ASVPIVALVQDVNRDQTDRNAF-QELDHIALFQSCTK-WVRRVTVAERIDD  147 (578)
T ss_pred             eCCCC-cHHHHHHHHHH--Hhh-------cCCCEEEEecCCccccCCCCCc-cccChhhhhccccc-eEEEeCCHHHHHH
Confidence             3333 33334444443  332       689998876432222111 123 332  478888864 3445667777777


Q ss_pred             HHHHhHh----C-CCcEEEEeCcccc
Q 020510          190 LLKAAIR----D-PDPVVFLENELLY  210 (325)
Q Consensus       190 ~l~~a~~----~-~~Pv~ir~~~~l~  210 (325)
                      .++.|++    . ++||||-.+..+.
T Consensus       148 ~i~~A~~~A~~~~~GPv~l~iP~Dv~  173 (578)
T PRK06112        148 YVDQAFTAATSGRPGPVVLLLPADLL  173 (578)
T ss_pred             HHHHHHHHHhhCCCCcEEEEcCHhHh
Confidence            7777765    2 4899998775543

>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria

Probab=88.51  E-value=2.6  Score=37.39  Aligned_cols=73  Identities=22%  Similarity=0.304  Sum_probs=50.2

Q ss_pred             CcEEEEEechh-HHHHHHHHHHHHhc--CCcEEEEEeeec---c-----C--CCHHHHHHHHhCCCeEEEEecCCCCCCH
Q 020510          239 KDVTITAFSKI-VGLSLKAAEILAKE--GISAEVINLRSI---R-----P--LDRSTINASVRKTNRLVTVEEGFPQHGV  305 (325)
Q Consensus       239 ~dv~Iia~G~~-~~~a~~Aa~~L~~~--Gi~~~Vi~~~~l---~-----P--~d~~~l~~~~~~~~~vvvvEe~~~~GGl  305 (325)
                      .||++.++|.. +.+++.|++.|++.  +++++|||+--|   .     |  ++.+.+.++.-+.+.|++.     .-|.
T Consensus        35 PDVVlA~aGd~pT~E~lAA~~lLr~~~P~lkiRvVNVvDLm~L~~~~~hPhglsd~~Fd~lFT~DkPViFa-----fHGY  109 (203)
T PF09363_consen   35 PDVVLACAGDVPTLEVLAAASLLREHFPELKIRVVNVVDLMKLQPPSEHPHGLSDEEFDALFTKDKPVIFA-----FHGY  109 (203)
T ss_dssp             -SEEEEEESHHHHHHHHHHHHHHHHT--T--EEEEEESBGGGGS-TTT-TTS--HHHHHHHH-SSS-EEEE-----ESSE
T ss_pred             CCEEEEecCchhhHHHHHHHHHHHHhccCceEEEEEEeEccccCCCCCCCCcCCHHHHHHhcCCCCCEEEE-----cCCC
Confidence            69999999955 47999999999998  899988887655   2     2  5667788888777766654     3567


Q ss_pred             HHHHHHHHcCC
Q 020510          306 GAEIWCAFFPP  316 (325)
Q Consensus       306 g~~v~~~l~~~  316 (325)
                      -+.|-..+...
T Consensus       110 p~~i~~L~~~R  120 (203)
T PF09363_consen  110 PWLIHRLLFGR  120 (203)
T ss_dssp             HHHHHHHTTTS
T ss_pred             HHHHHHHhcCC
Confidence            77777766543

PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.

>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed

Probab=88.39  E-value=9.3  Score=35.86  Aligned_cols=142  Identities=17%  Similarity=0.076  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeech-h--hHHHHHHHHHHHhccC-CeeEEec
Q 020510           39 VREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTP-I--TEAGFTGIGVGAAYYG-LKPVVEF  114 (325)
Q Consensus        39 ~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~G-I--aE~~~vg~A~GlA~~G-~~p~v~~  114 (325)
                      .-.++.++|.++....++.+++ .|++-++           .+ + +|++.+ .  .=-.++.+|.|++++. -++++++
T Consensus        28 il~~l~~al~~l~~~p~d~vvv-sdiGc~~-----------~~-~-~~~~~~~~~g~mG~alpaAiGaklA~Pd~~VV~i   93 (286)
T PRK11867         28 ILAALQRALAELGLDPENVAVV-SGIGCSG-----------RL-P-GYINTYGFHTIHGRALAIATGLKLANPDLTVIVV   93 (286)
T ss_pred             HHHHHHHHHHHhCCCCCcEEEE-eCCcccc-----------cc-C-ccccccchhhhhhcHHHHHHHHHHhCCCCcEEEE
Confidence            5566677776665555566555 4666321           01 2 344431 1  1133455777777663 3566655


Q ss_pred             ccccH--HHHHHHHHHHHHhhccccCCCCccCCEEEEeC-C---CCCCC-CCC----------C-cc-----hHHHHHHh
Q 020510          115 MTFNF--SMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N---GAAAG-VGA----------Q-HS-----HCYAAWYA  171 (325)
Q Consensus       115 ~~~~f--~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~---G~~~g-~G~----------t-Hs-----~~~~a~~~  171 (325)
                      . .+.  ++-....+.+ ++.        .++|++++.. +   |.+.+ ..+          + +.     -...++..
T Consensus        94 ~-GDG~~f~mg~~eL~t-A~r--------~nl~i~vIV~NN~~yGmt~~q~s~tt~~g~~~~~~~~g~~~~~~d~~~lA~  163 (286)
T PRK11867         94 T-GDGDALAIGGNHFIH-ALR--------RNIDITYILFNNQIYGLTKGQYSPTSPVGFVTKTTPYGSIEPPFNPVELAL  163 (286)
T ss_pred             e-CccHHHhCCHHHHHH-HHH--------hCCCcEEEEEeCHHHhhhcCccCCCCCCCcccccccCCCCCCCCCHHHHHH
Confidence            4 444  3444455544 333        4677655532 2   22211 110          0 00     11234444


Q ss_pred             cCC--CcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510          172 SVP--GLKVLSPYSSEDARGLLKAAIRDPDPVVFL  204 (325)
Q Consensus       172 ~iP--~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir  204 (325)
                      +..  .+......+++|+..+++.+++.++|++|-
T Consensus       164 a~Ga~~va~~~~~~~~el~~al~~Al~~~Gp~lIe  198 (286)
T PRK11867        164 GAGATFVARGFDSDVKQLTELIKAAINHKGFSFVE  198 (286)
T ss_pred             HCCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEE
Confidence            443  333346789999999999999999999985

>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional

Probab=88.13  E-value=4  Score=38.64  Aligned_cols=35  Identities=23%  Similarity=-0.029  Sum_probs=31.1

Q ss_pred             hcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEEe
Q 020510          171 ASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE  205 (325)
Q Consensus       171 ~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir~  205 (325)
                      ..+|-+...+|.|+.++...++.|++.++|.+|-.
T Consensus       170 ~g~~yVA~~~~~~~~~~~~~i~~A~~~~Gps~I~~  204 (300)
T PRK11864        170 HKVPYVATASIAYPEDFIRKLKKAKEIRGFKFIHL  204 (300)
T ss_pred             cCCCEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEE
Confidence            45678889999999999999999999999999853

>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional

Probab=88.07  E-value=7.1  Score=36.93  Aligned_cols=34  Identities=21%  Similarity=0.100  Sum_probs=30.8

Q ss_pred             hcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510          171 ASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL  204 (325)
Q Consensus       171 ~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir  204 (325)
                      ..+|-+...+|+++.|+...++.|.+.++|.+|.
T Consensus       174 ~g~~YVA~~~~~~~~~l~~~i~~A~~~~Gps~I~  207 (299)
T PRK11865        174 HGIPYVATASIGYPEDFMEKVKKAKEVEGPAYIQ  207 (299)
T ss_pred             cCCCEEEEEeCCCHHHHHHHHHHHHhCCCCEEEE
Confidence            5677788899999999999999999999999985

>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc)

Probab=87.92  E-value=6.1  Score=34.67  Aligned_cols=111  Identities=19%  Similarity=0.127  Sum_probs=64.2

Q ss_pred             CCceeechh-hH-HHHHHHHHHHhccC-CeeEEecccccH-HHHHHHHHHHHHhhccccCCCCccCCEEEEeC-C-CCCC
Q 020510           83 PERVLDTPI-TE-AGFTGIGVGAAYYG-LKPVVEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GAAA  156 (325)
Q Consensus        83 p~R~i~~GI-aE-~~~vg~A~GlA~~G-~~p~v~~~~~~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~~~  156 (325)
                      |.+|+..+- .= -..+.+|.|++++. -++++++. .+. .+.....+-. +..        .++|++++.- + +...
T Consensus        43 ~~~~~~~~~~g~mG~~lpaaiGa~la~p~r~vv~i~-GDG~f~m~~~eL~T-a~~--------~~lpvi~vV~NN~~yg~  112 (196)
T cd02013          43 PRSFIAPLSFGNCGYALPAIIGAKAAAPDRPVVAIA-GDGAWGMSMMEIMT-AVR--------HKLPVTAVVFRNRQWGA  112 (196)
T ss_pred             CCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEEE-cchHHhccHHHHHH-HHH--------hCCCeEEEEEECchhHH
Confidence            788886421 11 23556777877653 46666665 432 2223344433 332        4688766642 2 2211


Q ss_pred             -C------CC-----CCc-chHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHh---CCCcEEEE
Q 020510          157 -G------VG-----AQH-SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR---DPDPVVFL  204 (325)
Q Consensus       157 -g------~G-----~tH-s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~---~~~Pv~ir  204 (325)
                       .      .+     ..+ .-.+..+.+++ |+.-+.-.++.|+...++++++   .++|++|-
T Consensus       113 ~~~~q~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~p~lie  175 (196)
T cd02013         113 EKKNQVDFYNNRFVGTELESESFAKIAEAC-GAKGITVDKPEDVGPALQKAIAMMAEGKTTVIE  175 (196)
T ss_pred             HHHHHHHHcCCCcccccCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhcCCCCCeEEEE
Confidence             0      01     111 11223556655 6777788899999999999998   78999985

Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.

>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated

Probab=87.89  E-value=11  Score=38.76  Aligned_cols=113  Identities=16%  Similarity=0.098  Sum_probs=66.8

Q ss_pred             ceeechhhHHHHHHHHHHHhcc-CCee-EEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCC--CCCCC
Q 020510           85 RVLDTPITEAGFTGIGVGAAYY-GLKP-VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGA  160 (325)
Q Consensus        85 R~i~~GIaE~~~vg~A~GlA~~-G~~p-~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~G~  160 (325)
                      ||+.+ ..|+++..+|-|.|+. |... .+.|..+ .+.-++--|.+  |+.       ..+||+++..+...  .+.|.
T Consensus        49 ~~v~~-~hE~~A~~aAdgyar~tg~~~v~~vt~Gp-G~~N~l~~i~~--A~~-------~~~Pvl~IsG~~~~~~~~~~~  117 (568)
T PRK07449         49 RLHTH-FDERSAGFLALGLAKASKRPVAVIVTSGT-AVANLYPAVIE--AGL-------TGVPLIVLTADRPPELRDCGA  117 (568)
T ss_pred             EEEee-cCcccHHHHHHHHHHhhCCCEEEEECCcc-HHHhhhHHHHH--Hhh-------cCCcEEEEECCCCHHHhcCCC
Confidence            67775 8999999999999977 4433 3445544 44445555544  332       68999988643222  23333


Q ss_pred             CcchHHHHHHhcCCCcEEEeeCCHH-----HHHHHHHHhHh----CCCcEEEEeCcc
Q 020510          161 QHSHCYAAWYASVPGLKVLSPYSSE-----DARGLLKAAIR----DPDPVVFLENEL  208 (325)
Q Consensus       161 tHs~~~~a~~~~iP~~~V~~P~d~~-----e~~~~l~~a~~----~~~Pv~ir~~~~  208 (325)
                      .|.....++++.+-...+-.|.+..     .+..+++.+..    ..+||||-.+..
T Consensus       118 ~q~~d~~~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~a~~~a~~~~~GPV~i~iP~D  174 (568)
T PRK07449        118 NQAIDQLGLFGSYPFTSLALPEPTQDILAYWLVTTIDAALAAQTLQAGPVHINCPFR  174 (568)
T ss_pred             CceecHhhHhhhhhhhccCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCEEEeCCCC
Confidence            3322224788877655555565511     13345555333    368999986654

>PRK09259 putative oxalyl-CoA decarboxylase; Validated

Probab=87.55  E-value=7.9  Score=39.76  Aligned_cols=115  Identities=12%  Similarity=0.039  Sum_probs=71.3

Q ss_pred             CceeechhhHHHHHHHHHHHhcc-CCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCC-
Q 020510           84 ERVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG-  159 (325)
Q Consensus        84 ~R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G-  159 (325)
                      =|++.+ -.|+++..+|.|.|+. |...++.+.+...+.-+.--|.+  |+.       .++||+++.......  +.+ 
T Consensus        48 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gl~~--A~~-------~~~Pvl~I~G~~~~~~~~~~~  117 (569)
T PRK09259         48 IRYIGF-RHEQSAGNAAAAAGFLTQKPGVCLTVSAPGFLNGLTALAN--ATT-------NCFPMIMISGSSEREIVDLQQ  117 (569)
T ss_pred             CCEEee-CCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHH--HHh-------cCCCEEEEEccCCcccccccC
Confidence            367775 8999999999999988 54444433323334445555544  322       589998875432211  111 


Q ss_pred             CCcchH-H-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHhC-----CCcEEEEeCcccc
Q 020510          160 AQHSHC-Y-AAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELLY  210 (325)
Q Consensus       160 ~tHs~~-~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~ir~~~~l~  210 (325)
                      .++ |. + ..+++.+-. ..+...++.++...++.|++.     ++||||-.++.+.
T Consensus       118 ~~~-q~~d~~~~~~~~tk-~s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv~  173 (569)
T PRK09259        118 GDY-EELDQLNAAKPFCK-AAFRVNRAEDIGIGVARAIRTAVSGRPGGVYLDLPAKVL  173 (569)
T ss_pred             CCc-cccchhhhhhhhee-eeEEcCCHHHHHHHHHHHHHHhhhCCCCcEEEEeCHHHh
Confidence            123 32 2 378888754 345556788888877777762     5899998776543

>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC)

Probab=87.50  E-value=7.9  Score=33.05  Aligned_cols=37  Identities=19%  Similarity=0.260  Sum_probs=29.5

Q ss_pred             HHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510          167 AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL  204 (325)
Q Consensus       167 ~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir  204 (325)
                      ..+.... |+..+...+++|+.+.++.+.+.++|++|-
T Consensus       139 ~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~vi~  175 (178)
T cd02002         139 AAIAKAF-GVEAERVETPEELDEALREALAEGGPALIE  175 (178)
T ss_pred             HHHHHHc-CCceEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence            3555555 666777788999999999999988999874

P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.

>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family

Probab=87.33  E-value=13  Score=38.00  Aligned_cols=114  Identities=15%  Similarity=0.119  Sum_probs=69.2

Q ss_pred             ceeechhhHHHHHHHHHHHhcc-CCeeEEe-cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCC-
Q 020510           85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG-  159 (325)
Q Consensus        85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~-~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G-  159 (325)
                      |||.+ -.|++++.+|.|.|+. | +.++. +..+..++ +.--+.+  |+.       .++||+++...-...  +.+ 
T Consensus        41 ~~v~~-rhE~~A~~mAdgyar~tg-~gv~~~t~GPG~~n-~~~gla~--A~~-------d~~Pvl~I~G~~~~~~~~~~~  108 (539)
T TIGR03393        41 CWVGC-ANELNAAYAADGYARCKG-AAALLTTFGVGELS-AINGIAG--SYA-------EHLPVIHIVGAPGTAAQQRGE  108 (539)
T ss_pred             cEecc-CCcccHHHHhhhhhhhcC-ceEEEEecCccHHH-HhhHHHH--Hhh-------ccCCEEEEECCCCcchhhcCc
Confidence            56664 8999999999999988 6 56554 44444333 4444443  332       589998875421111  111 


Q ss_pred             -------C-CcchHHHHHHhcCCCcE-EEeeCC-HHHHHHHHHHhHhCCCcEEEEeCccccC
Q 020510          160 -------A-QHSHCYAAWYASVPGLK-VLSPYS-SEDARGLLKAAIRDPDPVVFLENELLYG  211 (325)
Q Consensus       160 -------~-tHs~~~~a~~~~iP~~~-V~~P~d-~~e~~~~l~~a~~~~~Pv~ir~~~~l~~  211 (325)
                             . .+ |....+++.+--.. +..|.+ +.++.++++.|+..++||||-.++.+..
T Consensus       109 ~~~~~~~~~~~-q~~~~~~~~itk~~~~~~~~~~~~~i~~a~~~A~~~~gPv~l~iP~Dv~~  169 (539)
T TIGR03393       109 LLHHTLGDGDF-RHFYRMAAEVTVAQAVLTEQNATAEIDRVITTALRERRPGYLMLPVDVAA  169 (539)
T ss_pred             eeeeecCCCch-HHHHHHhhceEEEEEEeChhhhHHHHHHHHHHHHhcCCCEEEEecccccC
Confidence                   0 12 23335555542211 224566 7888889999988889999987766543

A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.

>PLN02573 pyruvate decarboxylase

Probab=86.68  E-value=35  Score=35.22  Aligned_cols=112  Identities=19%  Similarity=0.116  Sum_probs=64.9

Q ss_pred             ceeechhhHHHHHHHHHHHhcc-CCeeEEe-cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--C-CC
Q 020510           85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--G-VG  159 (325)
Q Consensus        85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~-~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g-~G  159 (325)
                      +||.+ ..|+++..+|-|.|+. | ..++. ++.+..++ +.--+.+  |+.       -..||+++...-...  + .+
T Consensus        56 ~~i~~-rhE~~A~~mAdgyaR~tg-~gv~~~t~GpG~~n-~~~gla~--A~~-------d~~Pvl~I~G~~~~~~~~~~~  123 (578)
T PLN02573         56 NLIGC-CNELNAGYAADGYARARG-VGACVVTFTVGGLS-VLNAIAG--AYS-------ENLPVICIVGGPNSNDYGTNR  123 (578)
T ss_pred             eEEEe-CCHHHHHHHHHHHHHHhC-CCeEEEecCccHHH-HHHHHHH--HHH-------hCCCEEEEECCCChhhhhcCc
Confidence            56664 8999999999999977 7 55544 44443333 4444443  222       578998886431111  2 22


Q ss_pred             CCcc----h---HHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEeCccc
Q 020510          160 AQHS----H---CYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELL  209 (325)
Q Consensus       160 ~tHs----~---~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~ir~~~~l  209 (325)
                      ..|+    +   ....+++.+-. ......+++++...++.|++    .++||||-.+..+
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~itk-~s~~v~~~~~~~~~l~~A~~~A~~~~gPV~l~iP~Dv  183 (578)
T PLN02573        124 ILHHTIGLPDFSQELRCFQTVTC-YQAVINNLEDAHELIDTAISTALKESKPVYISVSCNL  183 (578)
T ss_pred             eeeeecCCCChHHHHHHhhceEE-EEEEeCCHHHHHHHHHHHHHHHHhcCCCEEEEeehhh
Confidence            2231    1   11266766542 23344566666655555554    5689999877654

>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed

Probab=84.95  E-value=28  Score=32.54  Aligned_cols=143  Identities=12%  Similarity=0.001  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCcee-echhhHHHHHHHHHHHhccC-CeeEEeccccc
Q 020510           41 EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVL-DTPITEAGFTGIGVGAAYYG-LKPVVEFMTFN  118 (325)
Q Consensus        41 ~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i-~~GIaE~~~vg~A~GlA~~G-~~p~v~~~~~~  118 (325)
                      ..+.++|.++....++++++ .|++-++       .+..-+.+++|. -.|    .++.+|.|++++- -++++++. .+
T Consensus        29 ~~v~~al~e~~~~~~d~ivv-sdiGc~~-------~~~~~~~~~~~~~~~G----~alPaAiGaklA~Pdr~VV~i~-GD   95 (277)
T PRK09628         29 KSIIRAIDKLGWNMDDVCVV-SGIGCSG-------RFSSYVNCNTVHTTHG----RAVAYATGIKLANPDKHVIVVS-GD   95 (277)
T ss_pred             HHHHHHHHHhcCCCCCEEEE-eCcCHHH-------HhhccCCCCceeeccc----cHHHHHHHHHHHCCCCeEEEEE-Cc
Confidence            34557777665344566555 4666321       111122244554 344    5677888877762 35666554 55


Q ss_pred             HHHH-HHHHHHHHHhhccccCCCCccCCEEEEeC-C---CCCCC-C------CC-C----c-c--h--HHHHHHhcCCCc
Q 020510          119 FSMQ-AIDHIINSAAKSNYMSSGQISVPIVFRGP-N---GAAAG-V------GA-Q----H-S--H--CYAAWYASVPGL  176 (325)
Q Consensus       119 f~~r-a~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~---G~~~g-~------G~-t----H-s--~--~~~a~~~~iP~~  176 (325)
                      .... .-++-...++.        .++|++++.. +   |...+ .      |. +    + .  .  .+..+..+. |.
T Consensus        96 G~f~~~g~~el~ta~r--------~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~~~~~~~g~~~~~~D~~~lA~a~-G~  166 (277)
T PRK09628         96 GDGLAIGGNHTIHGCR--------RNIDLNFILINNFIYGLTNSQTSPTTPKGMWTVTAQYGNIDPTFDACKLATAA-GA  166 (277)
T ss_pred             hHHHHhhHHHHHHHHH--------hCcCeEEEEEEChHHhcceecccCCCCCCceeeeccCCCcCCCCCHHHHHHHC-CC
Confidence            4321 11222222443        5777666543 2   22211 0      10 0    0 0  0  112444443 43


Q ss_pred             EE---EeeCCHHHHHHHHHHhHhCCCcEEEEe
Q 020510          177 KV---LSPYSSEDARGLLKAAIRDPDPVVFLE  205 (325)
Q Consensus       177 ~V---~~P~d~~e~~~~l~~a~~~~~Pv~ir~  205 (325)
                      .-   ....++.|++.+++.|++.++|++|-.
T Consensus       167 ~~va~~~v~~~~el~~al~~Al~~~Gp~lIeV  198 (277)
T PRK09628        167 SFVARESVIDPQKLEKLLVKGFSHKGFSFFDV  198 (277)
T ss_pred             ceEEEEccCCHHHHHHHHHHHHhCCCCEEEEE
Confidence            32   578999999999999999999999853

>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE)

Probab=84.83  E-value=25  Score=30.36  Aligned_cols=141  Identities=16%  Similarity=0.133  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHH-HhCCCceeechhhHHHHHHHHHHHhccCCeeEEeccccc
Q 020510           40 REALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLE-KYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFN  118 (325)
Q Consensus        40 ~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~-~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~~~~  118 (325)
                      |+++.+.|.+.+.  ..+++.  |.+...      ..+.. ...|.+|+..|.-= ..++.|.|++++..++++++. .+
T Consensus         1 ~~~~~~~l~~~~~--~~~vv~--d~G~~~------~~~~~~~~~~~~~~~~g~mG-~~lp~AiGaala~~~~vv~i~-GD   68 (179)
T cd03372           1 RRDAIKTLIADLK--DELVVS--NIGFPS------KELYAAGDRPLNFYMLGSMG-LASSIGLGLALAQPRKVIVID-GD   68 (179)
T ss_pred             CHHHHHHHHHhCC--CCeEEe--CCCHhH------HHHHHccCcccccccccchh-hHHHHHHHHHhcCCCcEEEEE-CC
Confidence            3566677776665  344443  444321      11221 12256776432211 233477777766447777765 44


Q ss_pred             H-HHHHHHHHHHHHhhccccCCCCcc-CCEEEE-eCCCCCCCCCC-----CcchHHHHHHhcCCCcEEEeeC-CHHHHHH
Q 020510          119 F-SMQAIDHIINSAAKSNYMSSGQIS-VPIVFR-GPNGAAAGVGA-----QHSHCYAAWYASVPGLKVLSPY-SSEDARG  189 (325)
Q Consensus       119 f-~~ra~dqi~~~~a~~~~~~~~~~~-~pvv~~-~~~G~~~g~G~-----tHs~~~~a~~~~iP~~~V~~P~-d~~e~~~  189 (325)
                      . ++.....+-. ++.        .+ .|++++ ..++.++-.+.     .+...+..+.+++ |+..+... +++|+..
T Consensus        69 G~f~m~~~el~t-a~~--------~~~~~l~vvV~NN~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~~el~~  138 (179)
T cd03372          69 GSLLMNLGALAT-IAA--------EKPKNLIIVVLDNGAYGSTGNQPTHAGKKTDLEAVAKAC-GLDNVATVASEEAFEK  138 (179)
T ss_pred             cHHHhCHHHHHH-HHH--------cCCCCEEEEEEcCccccccCCCCCCCCCCCCHHHHHHHc-CCCeEEecCCHHHHHH
Confidence            3 2222233322 332        23 344443 23322211121     1212334566655 55556666 9999999


Q ss_pred             HHHHhHhCCCcEEEE
Q 020510          190 LLKAAIRDPDPVVFL  204 (325)
Q Consensus       190 ~l~~a~~~~~Pv~ir  204 (325)
                      .++++.  ++|.+|-
T Consensus       139 al~~a~--~gp~lIe  151 (179)
T cd03372         139 AVEQAL--DGPSFIH  151 (179)
T ss_pred             HHHHhc--CCCEEEE
Confidence            999988  6898874

M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.

>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions

Probab=84.55  E-value=3  Score=35.57  Aligned_cols=55  Identities=16%  Similarity=0.131  Sum_probs=42.9

Q ss_pred             EEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCCeEEEEec
Q 020510          241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEE  298 (325)
Q Consensus       241 v~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe  298 (325)
                      ++||+-|..-....++++.|++.|+.+=.|-+.   ..|.+.|...+.+..+|+++++
T Consensus       110 ~vviTdG~s~d~~~~~a~~lr~~gv~i~~vG~~---~~~~~eL~~ias~p~~vf~v~~  164 (165)
T cd01481         110 LVLITGGKSQDDVERPAVALKRAGIVPFAIGAR---NADLAELQQIAFDPSFVFQVSD  164 (165)
T ss_pred             EEEEeCCCCcchHHHHHHHHHHCCcEEEEEeCC---cCCHHHHHHHhCCCccEEEecC
Confidence            456777776677889999999999776555544   5799999988877788998875

The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.

>PRK08155 acetolactate synthase catalytic subunit; Validated

Probab=84.42  E-value=9.5  Score=39.09  Aligned_cols=110  Identities=21%  Similarity=0.204  Sum_probs=65.7

Q ss_pred             CCceeechh--hHHHHHHHHHHHhccC-CeeEEeccccc--HHHHHHHHHHHHHhhccccCCCCccCCEEEEeC-CC-CC
Q 020510           83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTFN--FSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NG-AA  155 (325)
Q Consensus        83 p~R~i~~GI--aE~~~vg~A~GlA~~G-~~p~v~~~~~~--f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G-~~  155 (325)
                      |.+|+..+-  +=-..+..|.|++++. -++++++. .+  |.+.+.| +-. +..        .++|++++.- ++ ..
T Consensus       409 ~~~~~~~~~~g~mG~~lpaaiGa~la~~~~~vv~i~-GDGsf~~~~~e-L~t-a~~--------~~lpvi~vV~NN~~~g  477 (564)
T PRK08155        409 PRQWLTSGGLGTMGFGLPAAIGAALANPERKVLCFS-GDGSLMMNIQE-MAT-AAE--------NQLDVKIILMNNEALG  477 (564)
T ss_pred             CCeEEeCCCcccccchhHHHHHHHHhCCCCcEEEEE-ccchhhccHHH-HHH-HHH--------hCCCeEEEEEeCCccc
Confidence            678987643  3334666788877664 34555554 33  3333333 433 333        4677655532 22 22


Q ss_pred             C---------C---CCCC--cchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510          156 A---------G---VGAQ--HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL  204 (325)
Q Consensus       156 ~---------g---~G~t--Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir  204 (325)
                      .         +   .+..  +.-.+.++.+++ |+.-+...+.+|+...++.+++.++|++|-
T Consensus       478 ~~~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lIe  539 (564)
T PRK08155        478 LVHQQQSLFYGQRVFAATYPGKINFMQIAAGF-GLETCDLNNEADPQAALQEAINRPGPALIH  539 (564)
T ss_pred             ccHHHHHHhcCCCeeeccCCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence            1         0   1111  111234667776 788889999999999999999988999985

>PRK06163 hypothetical protein; Provisional

Probab=83.55  E-value=18  Score=32.04  Aligned_cols=147  Identities=13%  Similarity=0.072  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccC-CeeEEecccc
Q 020510           39 VREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG-LKPVVEFMTF  117 (325)
Q Consensus        39 ~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G-~~p~v~~~~~  117 (325)
                      .|..+-+.|.+.+.. +++++.  |.+...  +.   .+.-.+.|.+|+..| +=-..+.+|.|++++. -++++++. .
T Consensus        14 ~~~~~i~~l~~~l~~-~~~iv~--D~G~~~--~~---~~~~~~~~~~~~~~G-sMG~glpaAiGaalA~p~r~Vv~i~-G   83 (202)
T PRK06163         14 NRFDLTCRLVAKLKD-EEAVIG--GIGNTN--FD---LWAAGQRPQNFYMLG-SMGLAFPIALGVALAQPKRRVIALE-G   83 (202)
T ss_pred             CHHHHHHHHHHhcCC-CCEEEE--CCCccH--HH---HHHhhcCCCCeEeec-ccccHHHHHHHHHHhCCCCeEEEEE-c
Confidence            355556666666643 345443  555211  11   111122367787432 1122334777777663 46666665 4


Q ss_pred             cH-HHHHHHHHHHHHhhccccCCCCccCCEEEEeC-C-CCC--CCC--CCCcchHHHHHHhcCCCcE-EEeeCCHHHHHH
Q 020510          118 NF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GAA--AGV--GAQHSHCYAAWYASVPGLK-VLSPYSSEDARG  189 (325)
Q Consensus       118 ~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~~--~g~--G~tHs~~~~a~~~~iP~~~-V~~P~d~~e~~~  189 (325)
                      +. .+-....+-. ++..       .++|++++.- + +..  .+.  ...+.-++..+.+++ |+. -+...+.+|+..
T Consensus        84 DG~f~m~~~eL~T-a~~~-------~~lpi~ivV~NN~~yg~~~~~~~~~~~~~Df~~lA~a~-G~~~~~~v~~~~el~~  154 (202)
T PRK06163         84 DGSLLMQLGALGT-IAAL-------APKNLTIIVMDNGVYQITGGQPTLTSQTVDVVAIARGA-GLENSHWAADEAHFEA  154 (202)
T ss_pred             chHHHHHHHHHHH-HHHh-------cCCCeEEEEEcCCchhhcCCccCCCCCCCCHHHHHHHC-CCceEEEeCCHHHHHH
Confidence            43 2323333322 3221       2456555432 2 222  111  111211334566666 665 567789999999


Q ss_pred             HHHHhHhCCCcEEEE
Q 020510          190 LLKAAIRDPDPVVFL  204 (325)
Q Consensus       190 ~l~~a~~~~~Pv~ir  204 (325)
                      .++.+++.++|++|-
T Consensus       155 al~~a~~~~~p~lIe  169 (202)
T PRK06163        155 LVDQALSGPGPSFIA  169 (202)
T ss_pred             HHHHHHhCCCCEEEE
Confidence            999999988999875

>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit

Probab=83.53  E-value=10  Score=32.63  Aligned_cols=38  Identities=26%  Similarity=0.391  Sum_probs=26.0

Q ss_pred             HHHHhcC--CCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510          167 AAWYASV--PGLKVLSPYSSEDARGLLKAAIRDPDPVVFL  204 (325)
Q Consensus       167 ~a~~~~i--P~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir  204 (325)
                      ..+.+++  +...|..|.+-+++...++.+++.++|.+|.
T Consensus       134 ~~~a~a~G~~~~~v~~~~~l~~~~~al~~a~~~~gp~lI~  173 (178)
T cd02008         134 EALVRAIGVKRVVVVDPYDLKAIREELKEALAVPGVSVII  173 (178)
T ss_pred             HHHHHHCCCCEEEecCccCHHHHHHHHHHHHhCCCCEEEE
Confidence            3555554  4455555556666668889999888999885

IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.

>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor

Probab=83.39  E-value=8.6  Score=32.00  Aligned_cols=110  Identities=21%  Similarity=0.258  Sum_probs=62.9

Q ss_pred             CCceeech--hhHHHHHHHHHHHhccC-CeeEEecccccH-HHHHHHHHHHHHhhccccCCCCccCCEEEEeC--CCCCC
Q 020510           83 PERVLDTP--ITEAGFTGIGVGAAYYG-LKPVVEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRGP--NGAAA  156 (325)
Q Consensus        83 p~R~i~~G--IaE~~~vg~A~GlA~~G-~~p~v~~~~~~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~--~G~~~  156 (325)
                      |.+|+..+  -+=-..+++|.|++++. -++++++. .+. .+-....+.. +..        .++|++++.-  ++...
T Consensus        18 p~~~~~~~~~g~mG~~~~~aiGa~~a~p~~~vv~i~-GDG~f~~~~~el~t-a~~--------~~~~v~~vv~nN~~~~~   87 (153)
T PF02775_consen   18 PRRFLTSGGFGSMGYALPAAIGAALARPDRPVVAIT-GDGSFLMSLQELAT-AVR--------YGLPVVIVVLNNGGYGM   87 (153)
T ss_dssp             TTEEEESTTTT-TTTHHHHHHHHHHHSTTSEEEEEE-EHHHHHHHGGGHHH-HHH--------TTSSEEEEEEESSBSHH
T ss_pred             CCeEEcCCCccccCCHHHhhhHHHhhcCcceeEEec-CCcceeeccchhHH-Hhh--------ccceEEEEEEeCCcceE
Confidence            77888732  23345567777777763 45555554 442 2222344443 332        4667666532  22210


Q ss_pred             ------CCCC----------CcchHHHHHHhcCCCcEEEeeCCH--HHHHHHHHHhHhCCCcEEE
Q 020510          157 ------GVGA----------QHSHCYAAWYASVPGLKVLSPYSS--EDARGLLKAAIRDPDPVVF  203 (325)
Q Consensus       157 ------g~G~----------tHs~~~~a~~~~iP~~~V~~P~d~--~e~~~~l~~a~~~~~Pv~i  203 (325)
                            ..+.          .|...+..+.+++ |+..+.-.++  +|+...++++++.++|++|
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~~el~~al~~a~~~~gp~vI  151 (153)
T PF02775_consen   88 TGGQQTPFGGGRFSGVDGKTFPNPDFAALAEAF-GIKGARVTTPDPEELEEALREALESGGPAVI  151 (153)
T ss_dssp             HHHHHHHTTSTCHHSTBTTTSTTCGHHHHHHHT-TSEEEEESCHSHHHHHHHHHHHHHSSSEEEE
T ss_pred             eccccccCcCcccccccccccccCCHHHHHHHc-CCcEEEEccCCHHHHHHHHHHHHhCCCcEEE
Confidence                  0111          1212345677776 6677665555  9999999999999999987

It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....

>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis

Probab=82.93  E-value=9.1  Score=33.68  Aligned_cols=98  Identities=13%  Similarity=0.103  Sum_probs=54.6

Q ss_pred             HHHHHHHHHhcc----C-CeeEEecccccH-HH--HHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCcchHH
Q 020510           95 GFTGIGVGAAYY----G-LKPVVEFMTFNF-SM--QAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCY  166 (325)
Q Consensus        95 ~~vg~A~GlA~~----G-~~p~v~~~~~~f-~~--ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tHs~~~  166 (325)
                      ..+++|.|+|+.    | -++++++. .+. ++  ..++.+.. ++.        ...|++++..+...+-.+.+.  ..
T Consensus        79 ~gl~~A~G~Ala~k~~~~~~~vv~~~-GDG~~~eG~~~Eal~~-A~~--------~~~~li~vvdnN~~~~~~~~~--~~  146 (195)
T cd02007          79 TSISAALGMAVARDLKGKKRKVIAVI-GDGALTGGMAFEALNN-AGY--------LKSNMIVILNDNEMSISPNVG--TP  146 (195)
T ss_pred             hhHHHHHHHHHHHHHhCCCCeEEEEE-cccccccChHHHHHHH-HHH--------hCCCEEEEEECCCcccCCCCC--CH
Confidence            345566777654    2 23444444 444 33  45566643 443        367877765542222222222  22


Q ss_pred             HHHHhcCCCcE---EEeeCCHHHHHHHHHHhHhCCCcEEEEe
Q 020510          167 AAWYASVPGLK---VLSPYSSEDARGLLKAAIRDPDPVVFLE  205 (325)
Q Consensus       167 ~a~~~~iP~~~---V~~P~d~~e~~~~l~~a~~~~~Pv~ir~  205 (325)
                      ...++.. ++.   ++...|.+++.+.++.+.+.++|++|..
T Consensus       147 ~~~~~a~-G~~~~~~vdG~d~~~l~~a~~~a~~~~~P~~I~~  187 (195)
T cd02007         147 GNLFEEL-GFRYIGPVDGHNIEALIKVLKEVKDLKGPVLLHV  187 (195)
T ss_pred             HHHHHhc-CCCccceECCCCHHHHHHHHHHHHhCCCCEEEEE
Confidence            3445443 333   3566788999999988887778999853

Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).

>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor

Probab=82.90  E-value=16  Score=31.95  Aligned_cols=37  Identities=11%  Similarity=-0.058  Sum_probs=27.8

Q ss_pred             HHHhcC--CCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510          168 AWYASV--PGLKVLSPYSSEDARGLLKAAIRDPDPVVFL  204 (325)
Q Consensus       168 a~~~~i--P~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir  204 (325)
                      .+.+.+  +........++.|+...++.+++.++|++|-
T Consensus       142 ~iA~a~G~~~~~~~~v~~~~el~~al~~al~~~gp~vIe  180 (193)
T cd03375         142 ALALAAGATFVARGFSGDIKQLKEIIKKAIQHKGFSFVE  180 (193)
T ss_pred             HHHHHCCCCEEEEEecCCHHHHHHHHHHHHhcCCCEEEE
Confidence            455554  2222246899999999999999999999985

In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=82.89  E-value=3.1  Score=31.66  Aligned_cols=68  Identities=16%  Similarity=0.106  Sum_probs=45.7

Q ss_pred             CCcEEEEEec----hhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCC----eEEEEecCCCCCCHHHHH
Q 020510          238 GKDVTITAFS----KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN----RLVTVEEGFPQHGVGAEI  309 (325)
Q Consensus       238 G~dv~Iia~G----~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~----~vvvvEe~~~~GGlg~~v  309 (325)
                      ..+++|++.|    +....+.+|.+.|++.|++.+.+|+..    |.+.-.++.+.++    ..|+++. ...||+....
T Consensus         7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~----~~~~~~~l~~~~g~~tvP~vfi~g-~~iGG~~~l~   81 (90)
T cd03028           7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILE----DEEVRQGLKEYSNWPTFPQLYVNG-ELVGGCDIVK   81 (90)
T ss_pred             cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCC----CHHHHHHHHHHhCCCCCCEEEECC-EEEeCHHHHH
Confidence            4689999888    467788899999999999999999753    3333222222222    3466655 4579986554


Q ss_pred             H
Q 020510          310 W  310 (325)
Q Consensus       310 ~  310 (325)
                      +
T Consensus        82 ~   82 (90)
T cd03028          82 E   82 (90)
T ss_pred             H
Confidence            4

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>PRK06457 pyruvate dehydrogenase; Provisional

Probab=81.69  E-value=29  Score=35.45  Aligned_cols=111  Identities=14%  Similarity=0.141  Sum_probs=63.9

Q ss_pred             CCceeechh-hHH-HHHHHHHHHhccC--CeeEEecccccH-HHHHHHHHHHHHhhccccCCCCccCCEEEEe--CCCCC
Q 020510           83 PERVLDTPI-TEA-GFTGIGVGAAYYG--LKPVVEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAA  155 (325)
Q Consensus        83 p~R~i~~GI-aE~-~~vg~A~GlA~~G--~~p~v~~~~~~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~--~~G~~  155 (325)
                      |.+|+..+- .=. ..+..|.|++++.  -+|++++. .+. .+.....+-. +..        .++|++++.  .++..
T Consensus       386 ~~~~~~~~~~g~mG~glpaaiGa~la~p~~~~Vv~i~-GDGsf~~~~~eL~T-a~~--------~~lpi~ivV~NN~~~g  455 (549)
T PRK06457        386 EQTFIFSAWLGSMGIGVPGSVGASFAVENKRQVISFV-GDGGFTMTMMELIT-AKK--------YDLPVKIIIYNNSKLG  455 (549)
T ss_pred             CCeEEeCCCcchhhhhHHHHHHHHhcCCCCCeEEEEE-cccHHhhhHHHHHH-HHH--------HCCCeEEEEEECCccc
Confidence            667776421 111 1445677777664  47777665 442 2333333433 333        466765553  22322


Q ss_pred             C------CCCC-----C-cchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510          156 A------GVGA-----Q-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL  204 (325)
Q Consensus       156 ~------g~G~-----t-Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir  204 (325)
                      .      ..|.     . +.-.+.++..++ |+.-....+++|+...++++++.++|.+|-
T Consensus       456 ~i~~~q~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lIe  515 (549)
T PRK06457        456 MIKFEQEVMGYPEWGVDLYNPDFTKIAESI-GFKGFRLEEPKEAEEIIEEFLNTKGPAVLD  515 (549)
T ss_pred             hHHHHHHHhcCCcccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence            0      0111     1 111234566666 777888899999999999999988999984

>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional

Probab=80.51  E-value=11  Score=35.30  Aligned_cols=146  Identities=16%  Similarity=0.087  Sum_probs=77.0

Q ss_pred             cHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccC-CeeEEeccc
Q 020510           38 MVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG-LKPVVEFMT  116 (325)
Q Consensus        38 s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G-~~p~v~~~~  116 (325)
                      +.-.++.+++.++-...++.+++ .|.+.++    ....+.+   +..+.-.   =..++.+|.|+++.. -+++++.. 
T Consensus        18 ~i~~~~~~a~~~l~~~p~d~ivv-sdiG~~~----~~~~~~~---~~~~~~~---mG~alp~AiGaklA~pd~~VVai~-   85 (280)
T PRK11869         18 GIRNALMKALSELNLKPRQVVIV-SGIGQAA----KMPHYIN---VNGFHTL---HGRAIPAATAVKATNPELTVIAEG-   85 (280)
T ss_pred             HHHHHHHHHHHHcCCCCCCEEEE-eCchHhh----hHHHHcc---CCCCCcc---cccHHHHHHHHHHHCCCCcEEEEE-
Confidence            45677888887765445555555 4555321    1111111   1111111   123456677777665 46777665 


Q ss_pred             ccHHHH--HHHHHHHHHhhccccCCCCccCCEEEEeCC----CCCCC-C------CC-C--------cch-HHHHHHhc-
Q 020510          117 FNFSMQ--AIDHIINSAAKSNYMSSGQISVPIVFRGPN----GAAAG-V------GA-Q--------HSH-CYAAWYAS-  172 (325)
Q Consensus       117 ~~f~~r--a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~----G~~~g-~------G~-t--------Hs~-~~~a~~~~-  172 (325)
                      .+....  ++..+.+ ++.        .++|++++..+    |.+.+ .      |. +        ... ++..+..+ 
T Consensus        86 GDG~~~~iG~~eL~t-A~r--------~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~  156 (280)
T PRK11869         86 GDGDMYAEGGNHLIH-AIR--------RNPDITVLVHNNQVYGLTKGQASPTTLKGFKTPTQPWGVFEEPFNPIALAIAL  156 (280)
T ss_pred             CchHHhhCcHHHHHH-HHH--------hCcCcEEEEEECHHHhhhcceecCCCCCCcccccCCCCccCCCCCHHHHHHHC
Confidence            554332  2555654 343        46776665322    22111 1      00 0        000 12234433 


Q ss_pred             -CCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510          173 -VPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL  204 (325)
Q Consensus       173 -iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir  204 (325)
                       .+.+....+.++.|+...++.|++.++|++|-
T Consensus       157 G~~~va~~~~~~~~~l~~~i~~Al~~~Gp~lIe  189 (280)
T PRK11869        157 DASFVARTFSGDIEETKEILKEAIKHKGLAIVD  189 (280)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHhCCCCEEEE
Confidence             34444444999999999999999999999985

>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates

Probab=80.29  E-value=25  Score=32.07  Aligned_cols=98  Identities=13%  Similarity=0.113  Sum_probs=57.1

Q ss_pred             HHHHHHHHhcc------CCeeEEecccccH-HH--HHHHHHHHHHhhccccCCCCccCC-EEEEeCCCCCCCCCCCcc--
Q 020510           96 FTGIGVGAAYY------GLKPVVEFMTFNF-SM--QAIDHIINSAAKSNYMSSGQISVP-IVFRGPNGAAAGVGAQHS--  163 (325)
Q Consensus        96 ~vg~A~GlA~~------G~~p~v~~~~~~f-~~--ra~dqi~~~~a~~~~~~~~~~~~p-vv~~~~~G~~~g~G~tHs--  163 (325)
                      .++.|.|+|++      ..++++ +. .+. ++  ..++.+.. ++.        .++| ++++..+...+-.+.++.  
T Consensus       110 gl~~avG~Ala~~~~~~~~~v~~-i~-GDG~~~~G~~~eal~~-a~~--------~~l~~li~vvdnN~~~~~~~~~~~~  178 (255)
T cd02012         110 GLSVAVGMALAEKLLGFDYRVYV-LL-GDGELQEGSVWEAASF-AGH--------YKLDNLIAIVDSNRIQIDGPTDDIL  178 (255)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEE-EE-CcccccccHHHHHHHH-HHH--------cCCCcEEEEEECCCccccCcHhhcc
Confidence            44566776655      344444 43 443 22  35666644 443        4665 444443322222233321  


Q ss_pred             -h-HHHHHHhcCCCcEEEeeC--CHHHHHHHHHHhHhC-CCcEEEEe
Q 020510          164 -H-CYAAWYASVPGLKVLSPY--SSEDARGLLKAAIRD-PDPVVFLE  205 (325)
Q Consensus       164 -~-~~~a~~~~iP~~~V~~P~--d~~e~~~~l~~a~~~-~~Pv~ir~  205 (325)
                       . .+..+++++ |+.++.-.  |..++...++.+.+. ++|++|..
T Consensus       179 ~~~~~~~~~~a~-G~~~~~v~G~d~~~l~~al~~a~~~~~~P~~I~~  224 (255)
T cd02012         179 FTEDLAKKFEAF-GWNVIEVDGHDVEEILAALEEAKKSKGKPTLIIA  224 (255)
T ss_pred             CchhHHHHHHHc-CCeEEEECCCCHHHHHHHHHHHHHcCCCCEEEEE
Confidence             1 223677777 78888777  999999999998886 78998854

In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.

>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase

Probab=80.12  E-value=14  Score=36.64  Aligned_cols=113  Identities=19%  Similarity=0.144  Sum_probs=62.1

Q ss_pred             ceeechhhHHHHHHHHHHHhcc-CCeeE-EecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCC--CCCCC
Q 020510           85 RVLDTPITEAGFTGIGVGAAYY-GLKPV-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGA  160 (325)
Q Consensus        85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~-v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~G~  160 (325)
                      +++.+ ..|+++.-+|-|.|+. |...+ +.|..+. ..-++--+.+  |+       ..++||+++..+-..  .+.+.
T Consensus        40 ~~v~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG-~~N~l~gl~~--A~-------~~~~Pvl~i~g~~~~~~~~~~~  108 (432)
T TIGR00173        40 RVHVH-IDERSAGFFALGLAKASGRPVAVVCTSGTA-VANLLPAVIE--AS-------YSGVPLIVLTADRPPELRGCGA  108 (432)
T ss_pred             EEEEe-cCCccHHHHHHHHHhccCCCEEEEECCcch-HhhhhHHHHH--hc-------ccCCcEEEEeCCCCHHHhCCCC
Confidence            66665 8999999999999988 54333 3344343 3334444433  33       268999888643222  12222


Q ss_pred             CcchHHHHHHhcCCCc--EEEeeCC-------HHHHHHHHHHhHh-CCCcEEEEeCcc
Q 020510          161 QHSHCYAAWYASVPGL--KVLSPYS-------SEDARGLLKAAIR-DPDPVVFLENEL  208 (325)
Q Consensus       161 tHs~~~~a~~~~iP~~--~V~~P~d-------~~e~~~~l~~a~~-~~~Pv~ir~~~~  208 (325)
                      .+......+++.+-..  .|-.|.+       +..+.++++.|.. .++||++-.+..
T Consensus       109 ~q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d  166 (432)
T TIGR00173       109 NQTIDQPGLFGSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVPFR  166 (432)
T ss_pred             CcccchhhHHhhccceeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCCCC
Confidence            1111223778776433  2223443       1233444444444 358999987654

2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	325
3exe_B	329	Crystal Structure Of The Pyruvate Dehydrogenase (E1		1e-103
2ozl_B	341	Human Pyruvate Dehydrogenase S264e Variant Length =		1e-102
1ni4_B	341	Human Pyruvate Dehydrogenase Length = 341		4e-92
1um9_B	324	Branched-chain 2-oxo Acid Dehydrogenase (e1) From T		8e-59
3duf_B	325	Snapshots Of Catalysis In The E1 Subunit Of The Pyr		3e-58
1w85_B	324	The Crystal Structure Of Pyruvate Dehydrogenase E1		4e-58
1ik6_A	369	3d Structure Of The E1beta Subunit Of Pyruvate Dehy		4e-53
2bp7_B	339	New Crystal Form Of The Pseudomonas Putida Branched		3e-48
1qs0_B	338	Crystal Structure Of Pseudomonas Putida 2-Oxoisoval		2e-47
1dtw_B	342	Human Branched-Chain Alpha-Keto Acid Dehydrogenase		1e-40
2j9f_B	350	Human Branched-Chain Alpha-Ketoacid Dehydrogenase-		1e-40
1olx_B	342	Roles Of His291-alpha And His146-beta' In The Reduc		2e-39
2o1x_A	629	1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From		2e-11
3ooy_A	616	Crystal Structure Of Human Transketolase (Tkt) Leng		3e-09
3mos_A	616	The Structure Of Human Transketolase Length = 616		4e-09
2o1s_A	621	1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From		2e-07

>pdb|3EXE|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 329

Iteration: 1
 Score =  369 bits (948), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 176/277 (63%), Positives = 218/277 (78%), Gaps = 1/277 (0%)
Query: 36  QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAG 95
           Q+ VR+A+N  +DEE+  D KVFL+GEEV +Y GAYK+S+GL +KYG +R++DTPI+E G
Sbjct: 2   QVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMG 61
Query: 96  FTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA 155
           F GI VGAA  GL+P+ EFMTFNFSMQAID +INSAAK+ YMS G   VPIVFRGPNGA+
Sbjct: 62  FAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGAS 121
Query: 156 AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFP 215
           AGV AQHS C+AAWY   PGLKV+SP++SEDA+GL+K+AIRD +PVV LENEL+YG  F 
Sbjct: 122 AGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFE 181
Query: 216 VSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSI 275
              E     F +PIGKAKIER+G  +T+ + S+ VG  L+AA +L+KEG+  EVIN+R+I
Sbjct: 182 FPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTI 241
Query: 276 RPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCA 312
           RP+D  TI ASV KTN LVTVE G+PQ GVGAEI CA
Sbjct: 242 RPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEI-CA 277

>pdb|2OZL|B Chain B, Human Pyruvate Dehydrogenase S264e Variant Length = 341

Iteration: 1
 Score =  369 bits (948), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 176/277 (63%), Positives = 218/277 (78%), Gaps = 1/277 (0%)
Query: 36  QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAG 95
           Q+ VR+A+N  +DEE+  D KVFL+GEEV +Y GAYK+S+GL +KYG +R++DTPI+E G
Sbjct: 14  QVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMG 73
Query: 96  FTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA 155
           F GI VGAA  GL+P+ EFMTFNFSMQAID +INSAAK+ YMS G   VPIVFRGPNGA+
Sbjct: 74  FAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGAS 133
Query: 156 AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFP 215
           AGV AQHS C+AAWY   PGLKV+SP++SEDA+GL+K+AIRD +PVV LENEL+YG  F 
Sbjct: 134 AGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFE 193
Query: 216 VSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSI 275
              E     F +PIGKAKIER+G  +T+ + S+ VG  L+AA +L+KEG+  EVIN+R+I
Sbjct: 194 FPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTI 253
Query: 276 RPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCA 312
           RP+D  TI ASV KTN LVTVE G+PQ GVGAEI CA
Sbjct: 254 RPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEI-CA 289

>pdb|1NI4|B Chain B, Human Pyruvate Dehydrogenase Length = 341

Iteration: 1
 Score =  334 bits (857), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 173/277 (62%), Positives = 211/277 (76%), Gaps = 1/277 (0%)
Query: 36  QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAG 95
           Q+ VR+A+N   DEE+  D KVFL+GEEV +Y GAYK+S+GL +KYG +R++DTPI+E G
Sbjct: 14  QVTVRDAINQGXDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEXG 73
Query: 96  FTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA 155
           F GI VGAA  GL+P+ EF TFNFS QAID +INSAAK+ Y S G   VPIVFRGPNGA+
Sbjct: 74  FAGIAVGAAXAGLRPICEFXTFNFSXQAIDQVINSAAKTYYXSGGLQPVPIVFRGPNGAS 133
Query: 156 AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFP 215
           AGV AQHS C+AAWY   PGLKV+SP++SEDA+GL+K+AIRD +PVV LENEL YG  F 
Sbjct: 134 AGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELXYGVPFE 193
Query: 216 VSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSI 275
              E     F +PIGKAKIER+G  +T+ + S+ VG  L+AA +L+KEG+  EVIN R+I
Sbjct: 194 FPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINXRTI 253
Query: 276 RPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCA 312
           RP D  TI ASV KTN LVTVE G+PQ GVGAEI CA
Sbjct: 254 RPXDXETIEASVXKTNHLVTVEGGWPQFGVGAEI-CA 289

>pdb|1UM9|B Chain B, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus Thermophilus Hb8 In Apo-form Length = 324

Iteration: 1
 Score =  223 bits (569), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 119/268 (44%), Positives = 171/268 (63%), Gaps = 4/268 (1%)
Query: 37  MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGF 96
           M + +ALN ALDEEM+ DP+V ++GE+VG+  G + +++GLL+KYGP+RV+DTP++EA  
Sbjct: 4   MTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAI 63
Query: 97  TGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA 156
            G  +G A +GL+PV E    ++     D +++  AK  Y S GQ + P+V R P+G   
Sbjct: 64  VGAALGMAAHGLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPSGGGV 123
Query: 157 GVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPV 216
             G  HS    A +    GLKV++  +  DA+GLLKAAIRD DPVVFLE + LY     V
Sbjct: 124 RGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIRDEDPVVFLEPKRLYRS---V 180
Query: 217 SAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIR 276
             EV +  + LPIGKA + REGKD+T+  +  ++   L+AA  LAK G+SAEV++LR++ 
Sbjct: 181 KEEVPEEDYTLPIGKAALRREGKDLTLICYGTVMPEVLQAAAELAKAGVSAEVLDLRTLM 240
Query: 277 PLDRSTINASVRKTNRLVTVEEGFPQHG 304
           P D   +  SV KT R+V V +  P+H 
Sbjct: 241 PWDYEAVMNSVAKTGRVVLVSDA-PRHA 267

>pdb|3DUF|B Chain B, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 325

Iteration: 1
 Score =  221 bits (564), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 119/274 (43%), Positives = 165/274 (60%), Gaps = 3/274 (1%)
Query: 36  QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAG 95
           QM + +A+  AL  E+  DP V + GE+VG   G ++ ++GL  ++G +RV DTP+ E+G
Sbjct: 3   QMTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESG 62
Query: 96  FTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA 155
             G+ +G A  G +PV E   F F  + +D I    A+  Y + G+  +PI  R P G  
Sbjct: 63  IGGLAIGLALQGFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPFGGG 122
Query: 156 AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFP 215
                 HS       A  PGLKV+ P +  DA+GLL +AIRD DPV+FLE+  LY  SF 
Sbjct: 123 VHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAIRDNDPVIFLEHLKLY-RSF- 180
Query: 216 VSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSI 275
              EV +  + +PIGKA I+REGKD+TI A+  +V  SLKAA  L KEGISAEV++LR++
Sbjct: 181 -RQEVPEGEYTIPIGKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRTV 239
Query: 276 RPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 309
           +PLD  TI  SV KT R + V+E   Q G+ A +
Sbjct: 240 QPLDIETIIGSVEKTGRAIVVQEAQRQAGIAANV 273

>pdb|1W85|B Chain B, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound To The Peripheral Subunit Binding Domain Of E2 Length = 324

Iteration: 1
 Score =  221 bits (563), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 119/274 (43%), Positives = 165/274 (60%), Gaps = 3/274 (1%)
Query: 36  QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAG 95
           QM + +A+  AL  E+  DP V + GE+VG   G ++ ++GL  ++G +RV DTP+ E+G
Sbjct: 2   QMTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESG 61
Query: 96  FTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA 155
             G+ +G A  G +PV E   F F  + +D I    A+  Y + G+  +PI  R P G  
Sbjct: 62  IGGLAIGLALQGFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPFGGG 121
Query: 156 AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFP 215
                 HS       A  PGLKV+ P +  DA+GLL +AIRD DPV+FLE+  LY  SF 
Sbjct: 122 VHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAIRDNDPVIFLEHLKLY-RSF- 179
Query: 216 VSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSI 275
              EV +  + +PIGKA I+REGKD+TI A+  +V  SLKAA  L KEGISAEV++LR++
Sbjct: 180 -RQEVPEGEYTIPIGKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRTV 238
Query: 276 RPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 309
           +PLD  TI  SV KT R + V+E   Q G+ A +
Sbjct: 239 QPLDIETIIGSVEKTGRAIVVQEAQRQAGIAANV 272

>pdb|1IK6|A Chain A, 3d Structure Of The E1beta Subunit Of Pyruvate Dehydrogenase From The Archeon Pyrobaculum Aerophilum Length = 369

Iteration: 1
 Score =  204 bits (520), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 111/271 (40%), Positives = 161/271 (59%), Gaps = 6/271 (2%)
Query: 41  EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIG 100
           +A+N AL EEM  D +V ++GE+VG+  G + +++GL E++GPERV+DTP+ E G  G  
Sbjct: 55  KAINMALHEEMERDERVVVLGEDVGKKGGVFLVTEGLYERFGPERVIDTPLNEGGILGFA 114
Query: 101 VGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGA 160
           +G A  GLKPV E    +F     D ++N  AK  Y S G    P+V R P G+    G 
Sbjct: 115 MGMAMAGLKPVAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSGTRGGL 174
Query: 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEV 220
            HS+   A +   PGL V+ P +  +A+GLLKAAIR  DPVVFLE ++LY        EV
Sbjct: 175 YHSNSPEAIFVHTPGLVVVMPSTPYNAKGLLKAAIRGDDPVVFLEPKILYRAP---REEV 231
Query: 221 LDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDR 280
            +  + + IGKA++ REG DVT+  +  +V  +L+AAE   +   S EV++L+++ PLD 
Sbjct: 232 PEGDYVVEIGKARVAREGDDVTLVTYGAVVHKALEAAE---RVKASVEVVDLQTLNPLDF 288
Query: 281 STINASVRKTNRLVTVEEGFPQHGVGAEIWC 311
            T+  SV KT RL+   +     G+GAE+  
Sbjct: 289 DTVLKSVSKTGRLIIAHDSPKTGGLGAEVRA 319

>pdb|2BP7|B Chain B, New Crystal Form Of The Pseudomonas Putida Branched-Chain Dehydrogenase (E1) Length = 339

Iteration: 1
 Score =  188 bits (478), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 111/290 (38%), Positives = 158/290 (54%), Gaps = 16/290 (5%)
Query: 33  AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPIT 92
           A   M + +AL SA+D  +  D  V + G++VG + G ++ ++GL  KYG  RV D PI+
Sbjct: 2   ATTTMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPIS 61
Query: 93  EAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN 152
           E+G  G  VG   YGL+PVVE    ++   A D I++  A+  Y S+G+   P+  R P 
Sbjct: 62  ESGIVGTAVGMGAYGLRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPC 121
Query: 153 GAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGE 212
           G     G  HS    A +  V GL+ + P +  DA+GLL A+I   DPV+FLE + LY  
Sbjct: 122 GGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIASIECDDPVIFLEPKRLYNG 181
Query: 213 SF------PVS-------AEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEI 259
            F      PV+       + V D  + +P+ KA I R G DV++  +   V ++  AAE 
Sbjct: 182 PFDGHHDRPVTPWSKHPHSAVPDGYYTVPLDKAAITRPGNDVSVLTYGTTVYVAQVAAE- 240
Query: 260 LAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 309
             + G+ AEVI+LRS+ PLD  TI  SV+KT R V V E     G GAE+
Sbjct: 241 --ESGVDAEVIDLRSLWPLDLDTIVESVKKTGRCVVVHEATRTCGFGAEL 288

>pdb|1QS0|B Chain B, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate Dehydrogenase (Branched-Chain Alpha-Keto Acid Dehydrogenase, E1b) Length = 338

Iteration: 1
 Score =  186 bits (472), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 109/282 (38%), Positives = 154/282 (54%), Gaps = 16/282 (5%)
Query: 41  EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIG 100
           +AL SA D  +  D  V + G++VG + G ++ ++GL  KYG  RV D PI+E+G  G  
Sbjct: 9   QALRSAXDVXLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTA 68
Query: 101 VGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGA 160
           VG   YGL+PVVE    ++   A D I++  A+  Y S+G+   P+  R P G     G 
Sbjct: 69  VGXGAYGLRPVVEIQFADYFYPASDQIVSEXARLRYRSAGEFIAPLTLRXPCGGGIYGGQ 128
Query: 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESF------ 214
            HS    A +  V GL+ + P +  DA+GLL A+I   DPV+FLE + LY   F      
Sbjct: 129 THSQSPEAXFTQVCGLRTVXPSNPYDAKGLLIASIECDDPVIFLEPKRLYNGPFDGHHDR 188
Query: 215 PVS-------AEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISA 267
           PV+       + V D  + +P+ KA I R G DV++  +   V ++  AAE   + G+ A
Sbjct: 189 PVTPWSKHPHSAVPDGYYTVPLDKAAITRPGNDVSVLTYGTTVYVAQVAAE---ESGVDA 245
Query: 268 EVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 309
           EVI+LRS+ PLD  TI  SV+KT R V V E     G GAE+
Sbjct: 246 EVIDLRSLWPLDLDTIVESVKKTGRCVVVHEATRTCGFGAEL 287

>pdb|1DTW|B Chain B, Human Branched-Chain Alpha-Keto Acid Dehydrogenase Length = 342

Iteration: 1
 Score =  163 bits (412), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 100/285 (35%), Positives = 154/285 (54%), Gaps = 9/285 (3%)
Query: 28  RNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVL 87
           R Y    ++M + +++ SALD  ++ DP   + GE+V  + G ++ + GL +KYG +RV 
Sbjct: 13  REYGQT-QKMNLFQSVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVF 70
Query: 88  DTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISV-PI 146
           +TP+ E G  G G+G A  G   + E    ++   A D I+N AAK  Y S    +   +
Sbjct: 71  NTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSL 130
Query: 147 VFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLEN 206
             R P G        HS    A++A  PG+KV+ P S   A+GLL + I D +P +F E 
Sbjct: 131 TIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEP 190
Query: 207 ELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE--G 264
           ++LY  +   + EV    + +P+ +A++ +EG DVT+ A+   V +  + A  +AKE  G
Sbjct: 191 KILYRAA---AEEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVAS-MAKEKLG 246
Query: 265 ISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 309
           +S EVI+LR+I P D  TI  SV KT RL+   E     G  +EI
Sbjct: 247 VSCEVIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEI 291

>pdb|2J9F|B Chain B, Human Branched-Chain Alpha-Ketoacid Dehydrogenase- Decarboxylase E1b Length = 350

Iteration: 1
 Score =  163 bits (412), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 100/285 (35%), Positives = 154/285 (54%), Gaps = 9/285 (3%)
Query: 28  RNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVL 87
           R Y    ++M + +++ SALD  ++ DP   + GE+V  + G ++ + GL +KYG +RV 
Sbjct: 13  REYGQT-QKMNLFQSVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVF 70
Query: 88  DTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISV-PI 146
           +TP+ E G  G G+G A  G   + E    ++   A D I+N AAK  Y S    +   +
Sbjct: 71  NTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSL 130
Query: 147 VFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLEN 206
             R P G        HS    A++A  PG+KV+ P S   A+GLL + I D +P +F E 
Sbjct: 131 TIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEP 190
Query: 207 ELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE--G 264
           ++LY  +   + EV    + +P+ +A++ +EG DVT+ A+   V +  + A  +AKE  G
Sbjct: 191 KILYRAA---AEEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVAS-MAKEKLG 246
Query: 265 ISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 309
           +S EVI+LR+I P D  TI  SV KT RL+   E     G  +EI
Sbjct: 247 VSCEVIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEI 291

>pdb|1OLX|B Chain B, Roles Of His291-alpha And His146-beta' In The Reductive Acylation Reaction Catalyzed By Human Branched-chain Alpha-ketoacid Dehydrogenase Length = 342

Iteration: 1
 Score =  159 bits (402), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 99/285 (34%), Positives = 153/285 (53%), Gaps = 9/285 (3%)
Query: 28  RNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVL 87
           R Y    ++M + +++ SALD  ++ DP   + GE+V  + G ++ + GL +KYG +RV 
Sbjct: 13  REYGQT-QKMNLFQSVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVF 70
Query: 88  DTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISV-PI 146
           +TP+ E G  G G+G A  G   + E    ++   A D I+N AAK  Y S    +   +
Sbjct: 71  NTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSL 130
Query: 147 VFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLEN 206
             R P G         S    A++A  PG+KV+ P S   A+GLL + I D +P +F E 
Sbjct: 131 TIRSPWGCVGHGALYASQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEP 190
Query: 207 ELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE--G 264
           ++LY  +   + EV    + +P+ +A++ +EG DVT+ A+   V +  + A  +AKE  G
Sbjct: 191 KILYRAA---AEEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVAS-MAKEKLG 246
Query: 265 ISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 309
           +S EVI+LR+I P D  TI  SV KT RL+   E     G  +EI
Sbjct: 247 VSCEVIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEI 291

>pdb|2O1X|A Chain A, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From Deinococcus Radiodurans Length = 629

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 120/276 (43%), Gaps = 30/276 (10%)
Query: 42  ALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGV 101
           A   A+ E    DP+ F++   + E  G  + S+       P R LD  I E        
Sbjct: 327 AFGEAVTEWAKTDPRTFVVTPAMREGSGLVEFSR-----VHPHRYLDVGIAEEVAVTTAA 381
Query: 102 GAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQ 161
           G A  G++PVV   +  F  +A D +++  A  +      ++  I   G  GA    GA 
Sbjct: 382 GMALQGMRPVVAIYS-TFLQRAYDQVLHDVAIEHL----NVTFCIDRAGIVGAD---GAT 433
Query: 162 HSHCYA-AWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPV--SA 218
           H+  +  ++  S+PG+++  P  + + RG+LK A     P         +   +P   +A
Sbjct: 434 HNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYAQTHDGP---------FAIRYPRGNTA 484
Query: 219 EVLDSSF-CLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRP 277
           +V   ++  L  G+ +  + G DV I A  K +  +LKAAE L   G    V+N R ++P
Sbjct: 485 QVPAGTWPDLKWGEWERLKGGDDVVILAGGKALDYALKAAEDLPGVG----VVNARFVKP 540
Query: 278 LDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAF 313
           LD   +     +   L+TVE+     G G  +  A 
Sbjct: 541 LDEEMLREVGGRARALITVEDNTVVGGFGGAVLEAL 576

>pdb|3OOY|A Chain A, Crystal Structure Of Human Transketolase (Tkt) Length = 616

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 111/242 (45%), Gaps = 22/242 (9%)
Query: 77  LLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFN-FSMQAIDHIINSA-AKS 134
           + +K  P+R ++  I E     I VG A    + V    TF  F  +A D I  +A ++S
Sbjct: 346 IFKKEHPDRFIECYIAEQNMVSIAVGCATRN-RTVPFCSTFAAFFTRAFDQIRMAAISES 404
Query: 135 NY-MSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKA 193
           N  +      V I   GP        +Q +    A + SVP   V  P         ++ 
Sbjct: 405 NINLCGSHCGVSIGEDGP--------SQMALEDLAMFRSVPTSTVFYPSDGVATEKAVEL 456
Query: 194 AIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGL- 252
           A  +   + F+        S P +A + +++    +G+AK+  + KD  +T     V L 
Sbjct: 457 AA-NTKGICFIRT------SRPENAIIYNNNEDFQVGQAKVVLKSKDDQVTVIGAGVTLH 509
Query: 253 -SLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN-RLVTVEEGFPQHGVGAEIW 310
            +L AAE+L KE I+  V++  +I+PLDR  I  S R T  R++TVE+ + + G+G  + 
Sbjct: 510 EALAAAELLKKEKINIRVLDPFTIKPLDRKLILDSARATKGRILTVEDHYYEGGIGEAVS 569
Query: 311 CA 312
            A
Sbjct: 570 SA 571

>pdb|3MOS|A Chain A, The Structure Of Human Transketolase Length = 616

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 111/242 (45%), Gaps = 22/242 (9%)
Query: 77  LLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFN-FSMQAIDHIINSA-AKS 134
           + +K  P+R ++  I E     I VG A    + V    TF  F  +A D I  +A ++S
Sbjct: 348 IFKKEHPDRFIECYIAEQNMVSIAVGCATRN-RTVPFCSTFAAFFTRAFDQIRMAAISES 406
Query: 135 NYMSSG-QISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKA 193
           N    G    V I   GP        +Q +    A + SVP   V  P         ++ 
Sbjct: 407 NINLCGSHCGVSIGEDGP--------SQMALEDLAMFRSVPTSTVFYPSDGVATEKAVEL 458
Query: 194 AIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGL- 252
           A  +   + F+        S P +A + +++    +G+AK+  + KD  +T     V L 
Sbjct: 459 AA-NTKGICFIRT------SRPENAIIYNNNEDFQVGQAKVVLKSKDDQVTVIGAGVTLH 511
Query: 253 -SLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN-RLVTVEEGFPQHGVGAEIW 310
            +L AAE+L KE I+  V++  +I+PLDR  I  S R T  R++TVE+ + + G+G  + 
Sbjct: 512 EALAAAELLKKEKINIRVLDPFTIKPLDRKLILDSARATKGRILTVEDHYYEGGIGEAVS 571
Query: 311 CA 312
            A
Sbjct: 572 SA 573

>pdb|2O1S|A Chain A, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From Escherichia Coli Length = 621

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 89/232 (38%), Gaps = 27/232 (11%)
Query: 83  PERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQI 142
           P+R  D  I E        G A  G KP+V   +  F  +A D +++  A          
Sbjct: 360 PDRYFDVAIAEQHAVTFAAGLAIGGYKPIVAIYS-TFLQRAYDQVLHDVAIQK------- 411
Query: 143 SVPIVFRGPNGAAAGVGAQ-HSHCYAAWY-ASVPGLKVLSPYSSEDARGLLKAAIR---D 197
            +P++F        G   Q H   +   Y   +P   + +P    + R  L         
Sbjct: 412 -LPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEXVIXTPSDENECRQXLYTGYHYNDG 470
Query: 198 PDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAA 257
           P  V +     +  E  P+          LPIGK  ++R G+ + I  F  +   + K A
Sbjct: 471 PSAVRYPRGNAVGVELTPLEK--------LPIGKGIVKRRGEKLAILNFGTLXPEAAKVA 522
Query: 258 EILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 309
           E L     +A +++ R ++PLD + I         LVTVEE     G G+ +
Sbjct: 523 ESL-----NATLVDXRFVKPLDEALILEXAASHEALVTVEENAIXGGAGSGV 569

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	325
2ozl_B	341	PDHE1-B, pyruvate dehydrogenase E1 component subun	0.0
1w85_B	324	Pyruvate dehydrogenase E1 component, beta subunit;	1e-143
1umd_B	324	E1-beta, 2-OXO acid dehydrogenase beta subunit; al	1e-141
1ik6_A	369	Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, o	1e-132
1qs0_B	338	2-oxoisovalerate dehydrogenase beta-subunit; heter	1e-125
2bfd_B	342	2-oxoisovalerate dehydrogenase beta subunit; oxido	1e-121
2o1x_A	629	1-deoxy-D-xylulose-5-phosphate synthase; thiamin,	2e-20
2o1s_A	621	1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia	1e-18
3mos_A	616	Transketolase, TK; thiamin diphosphate TPP THDP en	3e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B Length = 341

 Score =  524 bits (1351), Expect = 0.0
 Identities = 174/285 (61%), Positives = 219/285 (76%)

Query: 25  SNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPE 84
            +  ++     Q+ VR+A+N  +DEE+  D KVFL+GEEV +Y GAYK+S+GL +KYG +
Sbjct: 3   GSHHHHHHGSLQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDK 62

Query: 85  RVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISV 144
           R++DTPI+E GF GI VGAA  GL+P+ EFMTFNFSMQAID +INSAAK+ YMS G   V
Sbjct: 63  RIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPV 122

Query: 145 PIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204
           PIVFRGPNGA+AGV AQHS C+AAWY   PGLKV+SP++SEDA+GL+K+AIRD +PVV L
Sbjct: 123 PIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVL 182

Query: 205 ENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEG 264
           ENEL+YG  F    E     F +PIGKAKIER+G  +T+ + S+ VG  L+AA +L+KEG
Sbjct: 183 ENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEG 242

Query: 265 ISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 309
           +  EVIN+R+IRP+D  TI ASV KTN LVTVE G+PQ GVGAEI
Sbjct: 243 VECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEI 287

>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B* Length = 324

 Score =  406 bits (1045), Expect = e-143
 Identities = 117/274 (42%), Positives = 163/274 (59%), Gaps = 3/274 (1%)

Query: 36  QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAG 95
           QM + +A+  AL  E+  DP V + GE+VG   G ++ ++GL  ++G +RV DTP+ E+G
Sbjct: 2   QMTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESG 61

Query: 96  FTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA 155
             G+ +G A  G +PV E   F F  + +D I    A+  Y + G+  +PI  R P G  
Sbjct: 62  IGGLAIGLALQGFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPFGGG 121

Query: 156 AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFP 215
                 HS       A  PGLKV+ P +  DA+GLL +AIRD DPV+FLE+  LY     
Sbjct: 122 VHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAIRDNDPVIFLEHLKLYRS--- 178

Query: 216 VSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSI 275
              EV +  + +PIGKA I+REGKD+TI A+  +V  SLKAA  L KEGISAEV++LR++
Sbjct: 179 FRQEVPEGEYTIPIGKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRTV 238

Query: 276 RPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 309
           +PLD  TI  SV KT R + V+E   Q G+ A +
Sbjct: 239 QPLDIETIIGSVEKTGRAIVVQEAQRQAGIAANV 272

>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B* Length = 324

 Score =  399 bits (1029), Expect = e-141
 Identities = 117/274 (42%), Positives = 170/274 (62%), Gaps = 3/274 (1%)

Query: 36  QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAG 95
            M + +ALN ALDEEM+ DP+V ++GE+VG+  G + +++GLL+KYGP+RV+DTP++EA 
Sbjct: 3   LMTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAA 62

Query: 96  FTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA 155
             G  +G A +GL+PV E    ++     D +++  AK  Y S GQ + P+V R P+G  
Sbjct: 63  IVGAALGMAAHGLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPSGGG 122

Query: 156 AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFP 215
              G  HS    A +    GLKV++  +  DA+GLLKAAIRD DPVVFLE + LY     
Sbjct: 123 VRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIRDEDPVVFLEPKRLYRSVK- 181

Query: 216 VSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSI 275
              EV +  + LPIGKA + REGKD+T+  +  ++   L+AA  LAK G+SAEV++LR++
Sbjct: 182 --EEVPEEDYTLPIGKAALRREGKDLTLICYGTVMPEVLQAAAELAKAGVSAEVLDLRTL 239

Query: 276 RPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 309
            P D   +  SV KT R+V V +        +E+
Sbjct: 240 MPWDYEAVMNSVAKTGRVVLVSDAPRHASFVSEV 273

>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2 Length = 369

 Score =  379 bits (975), Expect = e-132
 Identities = 112/279 (40%), Positives = 164/279 (58%), Gaps = 6/279 (2%)

Query: 31  SSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTP 90
           +  V    + +A+N AL EEM  D +V ++GE+VG+  G + +++GL E++GPERV+DTP
Sbjct: 45  AGVVMMANMAKAINMALHEEMERDERVVVLGEDVGKKGGVFLVTEGLYERFGPERVIDTP 104

Query: 91  ITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG 150
           + E G  G  +G A  GLKPV E    +F     D ++N  AK  Y S G    P+V R 
Sbjct: 105 LNEGGILGFAMGMAMAGLKPVAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRT 164

Query: 151 PNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLY 210
           P G+    G  HS+   A +   PGL V+ P +  +A+GLLKAAIR  DPVVFLE ++LY
Sbjct: 165 PVGSGTRGGLYHSNSPEAIFVHTPGLVVVMPSTPYNAKGLLKAAIRGDDPVVFLEPKILY 224

Query: 211 GESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVI 270
                   EV +  + + IGKA++ REG DVT+  +  +V  +L+AAE   +   S EV+
Sbjct: 225 RAPR---EEVPEGDYVVEIGKARVAREGDDVTLVTYGAVVHKALEAAE---RVKASVEVV 278

Query: 271 NLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 309
           +L+++ PLD  T+  SV KT RL+   +     G+GAE+
Sbjct: 279 DLQTLNPLDFDTVLKSVSKTGRLIIAHDSPKTGGLGAEV 317

>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B Length = 338

 Score =  361 bits (930), Expect = e-125
 Identities = 109/290 (37%), Positives = 155/290 (53%), Gaps = 16/290 (5%)

Query: 33  AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPIT 92
           A   M + +AL SA+D  +  D  V + G++VG + G ++ ++GL  KYG  RV D PI+
Sbjct: 1   ATTTMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPIS 60

Query: 93  EAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN 152
           E+G  G  VG   YGL+PVVE    ++   A D I++  A+  Y S+G+   P+  R P 
Sbjct: 61  ESGIVGTAVGMGAYGLRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPC 120

Query: 153 GAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGE 212
           G     G  HS    A +  V GL+ + P +  DA+GLL A+I   DPV+FLE + LY  
Sbjct: 121 GGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIASIECDDPVIFLEPKRLYNG 180

Query: 213 SFPVS-------------AEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEI 259
            F                + V D  + +P+ KA I R G DV++  +   V ++  AAE 
Sbjct: 181 PFDGHHDRPVTPWSKHPHSAVPDGYYTVPLDKAAITRPGNDVSVLTYGTTVYVAQVAAE- 239

Query: 260 LAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 309
             + G+ AEVI+LRS+ PLD  TI  SV+KT R V V E     G GAE+
Sbjct: 240 --ESGVDAEVIDLRSLWPLDLDTIVESVKKTGRCVVVHEATRTCGFGAEL 287

>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ... Length = 342

 Score =  350 bits (901), Expect = e-121
 Identities = 96/281 (34%), Positives = 149/281 (53%), Gaps = 6/281 (2%)

Query: 31  SSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTP 90
               ++M + +++ SALD  ++ DP   + GE+V  + G ++ + GL +KYG +RV +TP
Sbjct: 15  YGQTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTP 73

Query: 91  ITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISV-PIVFR 149
           + E G  G G+G A  G   + E    ++   A D I+N AAK  Y S    +   +  R
Sbjct: 74  LCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIR 133

Query: 150 GPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELL 209
            P G        HS    A++A  PG+KV+ P S   A+GLL + I D +P +F E ++L
Sbjct: 134 SPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKIL 193

Query: 210 YGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILA-KEGISAE 268
           Y  +     EV    + +P+ +A++ +EG DVT+ A+   V +  + A +   K G+S E
Sbjct: 194 YRAAA---EEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAKEKLGVSCE 250

Query: 269 VINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 309
           VI+LR+I P D  TI  SV KT RL+   E     G  +EI
Sbjct: 251 VIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEI 291

>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans} Length = 629

 Score = 91.0 bits (227), Expect = 2e-20
 Identities = 66/242 (27%), Positives = 102/242 (42%), Gaps = 47/242 (19%)

Query: 83  PERVLDTPITE---AGFTGIGVGAAYYGLKPVVE-FMTFNFSMQ-AIDHIINSAAKSNYM 137
           P R LD  I E           G A  G++PVV  + TF   +Q A D +++  A  +  
Sbjct: 363 PHRYLDVGIAEEVAVTTAA---GMALQGMRPVVAIYSTF---LQRAYDQVLHDVAIEH-- 414

Query: 138 SSGQISVPIVF---RGPNGAAAGV----GAQHSHCY-AAWYASVPGLKVLSPYSSEDARG 189
                 + + F   R      AG+    GA H+  +  ++  S+PG+++  P  + + RG
Sbjct: 415 ------LNVTFCIDR------AGIVGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRG 462

Query: 190 LLKAAIRDPDPVVFLENELLY--GESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFS 247
           +LK A     P         Y  G +  V A        L  G+ +  + G DV I A  
Sbjct: 463 MLKYAQTHDGPFAIR-----YPRGNTAQVPAGTWPD---LKWGEWERLKGGDDVVILAGG 514

Query: 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGA 307
           K +  +LKAAE L   G    V+N R ++PLD   +     +   L+TVE+     G G 
Sbjct: 515 KALDYALKAAEDLPGVG----VVNARFVKPLDEEMLREVGGRARALITVEDNTVVGGFGG 570

Query: 308 EI 309
            +
Sbjct: 571 AV 572

>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} Length = 621

 Score = 85.6 bits (213), Expect = 1e-18
 Identities = 60/247 (24%), Positives = 102/247 (41%), Gaps = 57/247 (23%)

Query: 83  PERVLDTPITE-------AGFTGIGVGAAYYGLKPVVE-FMTFNFSMQ-AIDHIINSAAK 133
           P+R  D  I E       AG        A  G KP+V  + TF   +Q A D +++  A 
Sbjct: 360 PDRYFDVAIAEQHAVTFAAGL-------AIGGYKPIVAIYSTF---LQRAYDQVLHDVAI 409

Query: 134 SNYMSSGQISVPIVF---RGPNGAAAGV----GAQHSHCY-AAWYASVPGLKVLSPYSSE 185
                     +P++F   R      AG+    G  H   +  ++   +P + +++P    
Sbjct: 410 QK--------LPVLFAIDR------AGIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDEN 455

Query: 186 DARGLLKAAIR-DPDPVVFLENELLY--GESFPVSAEVLDSSFCLPIGKAKIEREGKDVT 242
           + R +L      +  P         Y  G +  V    L+    LPIGK  ++R G+ + 
Sbjct: 456 ECRQMLYTGYHYNDGPSAVR-----YPRGNAVGVELTPLEK---LPIGKGIVKRRGEKLA 507

Query: 243 ITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQ 302
           I  F  ++  + K AE      ++A ++++R ++PLD + I         LVTVEE    
Sbjct: 508 ILNFGTLMPEAAKVAE-----SLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIM 562

Query: 303 HGVGAEI 309
            G G+ +
Sbjct: 563 GGAGSGV 569

>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* Length = 616

 Score = 72.2 bits (178), Expect = 3e-14
 Identities = 40/149 (26%), Positives = 65/149 (43%), Gaps = 18/149 (12%)

Query: 172 SVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL----ENELLYGESFPVSAEVLDSSFCL 227
           SVP   V  P         ++ A              EN ++Y  +              
Sbjct: 437 SVPTSTVFYPSDGVATEKAVELAANTKGICFIRTSRPENAIIYNNNED-----------F 485

Query: 228 PIGKAKIEREGK--DVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINA 285
            +G+AK+  + K   VT+      +  +L AAE+L KE I+  V++  +I+PLDR  I  
Sbjct: 486 QVGQAKVVLKSKDDQVTVIGAGVTLHEALAAAELLKKEKINIRVLDPFTIKPLDRKLILD 545

Query: 286 SVRKT-NRLVTVEEGFPQHGVGAEIWCAF 313
           S R T  R++TVE+ + + G+G  +  A 
Sbjct: 546 SARATKGRILTVEDHYYEGGIGEAVSSAV 574

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 5e-04
 Identities = 56/327 (17%), Positives = 92/327 (28%), Gaps = 99/327 (30%)

Query: 14  GSPVARIRPVVSNLRNYSSAVKQMMVREALN-------SALDEE---------------- 50
              V+    +   L +    + Q  V E L        S +  E                
Sbjct: 58  KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117

Query: 51  -MSADPKVFLMGEEVGEYQGAYKISKGLLE-KYGPERVLDTPITEAGFTGIG----VGAA 104
            +  D +VF     V   Q   K+ + LLE +     ++D      G  G G        
Sbjct: 118 RLYNDNQVFAKY-NVSRLQPYLKLRQALLELRPAKNVLID------GVLGSGKTWVALDV 170

Query: 105 Y--YGLKPVVEFMTF--NFS-----------MQAIDHIINSAAKSNYMSSGQISVPIVFR 149
              Y ++  ++F  F  N             +Q + + I+     N+ S    S  I  R
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID----PNWTSRSDHSSNIKLR 226

Query: 150 GPNGAAAGV-----GAQHSHCYA----AWYASV-----PGLKVL--SPYSS-EDARGLLK 192
             +   A +        + +C         A          K+L  + +    D    L 
Sbjct: 227 -IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF---LS 282

Query: 193 AAIRDPDPVVFLENELLYGESFPVSAEVLD-SSFCLP-------------IGKAKIEREG 238
           AA      +      L   E   +  + LD     LP             I ++   R+G
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI--RDG 340

Query: 239 -------KDVTITAFSKIVGLSLKAAE 258
                  K V     + I+  SL   E
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLE 367

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	325
2ozl_B	341	PDHE1-B, pyruvate dehydrogenase E1 component subun	100.0
1w85_B	324	Pyruvate dehydrogenase E1 component, beta subunit;	100.0
1umd_B	324	E1-beta, 2-OXO acid dehydrogenase beta subunit; al	100.0
1ik6_A	369	Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, o	100.0
2bfd_B	342	2-oxoisovalerate dehydrogenase beta subunit; oxido	100.0
1qs0_B	338	2-oxoisovalerate dehydrogenase beta-subunit; heter	100.0
3mos_A	616	Transketolase, TK; thiamin diphosphate TPP THDP en	100.0
2o1x_A	629	1-deoxy-D-xylulose-5-phosphate synthase; thiamin,	100.0
2o1s_A	621	1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia	100.0
3l84_A	632	Transketolase; TKT, structural genomics, center fo	100.0
3m49_A	690	Transketolase; alpha-beta-alpha sandwich, csgid, t	100.0
3rim_A	700	Transketolase, TK; TPP, transferase; HET: TPP; 2.4	100.0
3uk1_A	711	Transketolase; structural genomics, seattle struct	100.0
1gpu_A	680	Transketolase; transferase(ketone residues); HET:	100.0
2r8o_A	669	Transketolase 1, TK 1; reaction intermediate, calc	100.0
1itz_A	675	Transketolase; calvin cycle, cofactor, thiamine py	100.0
3kom_A	663	Transketolase; rossmann fold, csgid, transferase,	100.0
2e6k_A	651	Transketolase; structural genomics, NPPSFA, nation	100.0
1r9j_A	673	Transketolase; domains, EACH of the alpha/beta typ	100.0
2jgd_A	933	2-oxoglutarate dehydrogenase E1 component; flavopr	100.0
2yic_A	868	2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.9	100.0
2xt6_A	1113	2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET	100.0
2qtc_A	886	Pyruvate dehydrogenase E1 component; thiamin dipho	100.0
3ahc_A	845	Phosphoketolase, xylulose 5-phosphate/fructose 6-p	100.0
1yd7_A	395	2-keto acid:ferredoxin oxidoreductase subunit alph	99.95
2c42_A	1231	Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron,	99.83
3ju3_A	118	Probable 2-oxoacid ferredoxin oxidoreductase, ALP;	99.63
1v5e_A	590	Pyruvate oxidase; oxidoreductase, flavoprotein; HE	94.33
2uz1_A	563	Benzaldehyde lyase; thiamine diphosphate, thiamine	93.09
1ozh_A	566	ALS, acetolactate synthase, catabolic; acetohydrox	92.93
1ybh_A	590	Acetolactate synthase, chloroplast; acetohydroxyac	92.73
2wvg_A	568	PDC, pyruvate decarboxylase; thiamine diphosphate,	92.27
2pan_A	616	Glyoxylate carboligase; thiamin-diphosphate (THDP)	92.06
3eya_A	549	Pyruvate dehydrogenase [cytochrome]; pyruvate oxid	91.99
2vbi_A	566	Pyruvate decarboxylase; thiamine pyrophosphate, ly	91.92
2iht_A	573	Carboxyethylarginine synthase; thiamin diphosphate	91.34
1q6z_A	528	BFD, BFDC, benzoylformate decarboxylase; lyase, ca	91.28
2nxw_A	565	Phenyl-3-pyruvate decarboxylase; thiamine pyrophos	91.08
2pgn_A	589	Cyclohexane-1,2-dione hydrolase (CDH); three alpha	90.12
4feg_A	603	Pyruvate oxidase; carbanion, structure activity re	89.5
1t9b_A	677	Acetolactate synthase, mitochondrial; acetohydroxy	89.45
2vk8_A	563	Pyruvate decarboxylase isozyme 1; asymmetric activ	89.32
2q28_A	564	Oxalyl-COA decarboxylase; lyase, oxalate degradati	89.02
2c31_A	568	Oxalyl-COA decarboxylase; oxalate, thiamin diphosp	88.94
3lq1_A	578	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-	87.63
3hww_A	556	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-	87.5
1t9b_A	677	Acetolactate synthase, mitochondrial; acetohydroxy	85.78
1ovm_A	552	Indole-3-pyruvate decarboxylase; thiamine diphosph	85.3
2vbf_A	570	Branched-chain alpha-ketoacid decarboxylase; KDCA,	84.98
2x7j_A	604	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -	82.3

>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B

Probab=100.00  E-value=2.7e-62  Score=466.44  Aligned_cols=286  Identities=62%  Similarity=1.025  Sum_probs=259.7

Q ss_pred             ccccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEE
Q 020510           33 AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVV  112 (325)
Q Consensus        33 ~~~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v  112 (325)
                      ++++++++++|+++|.+++++|++|+++++|++.++++|..+.+|.++|||+||||+||+|++|+++|+|+|++|+|||+
T Consensus        11 ~~~~~~~~~a~~~~L~~l~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~gp~r~~d~gIaE~~~v~~a~G~A~~G~rp~~   90 (341)
T 2ozl_B           11 GSLQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPIC   90 (341)
T ss_dssp             -CCEEEHHHHHHHHHHHHHHHCTTEEEEETTSSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEE
T ss_pred             CcccccHHHHHHHHHHHHHhhCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEE
Confidence            34789999999999999999999999999999876777777789999999999999999999999999999999999999


Q ss_pred             ecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCcchHHHHHHhcCCCcEEEeeCCHHHHHHHHH
Q 020510          113 EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLK  192 (325)
Q Consensus       113 ~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~  192 (325)
                      ++++++|++|++|||++++|+++||+||.+++|++++.++|..+++|+||||.+|++|+++|||+|++|+|++|++.+++
T Consensus        91 ~~~f~~F~~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~G~~g~~G~tHs~~~ea~l~~iP~l~V~~Psd~~e~~~~l~  170 (341)
T 2ozl_B           91 EFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIK  170 (341)
T ss_dssp             ECSSGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEECSCCSSCCGGGCCCCHHHHHTSTTCEEECCCSHHHHHHHHH
T ss_pred             EeccHHHHHHHHHHHHHHHHHHHhhccccCCCCEEEEEcCcCCCCCCcchhhHHHHHhccCCCCEEEEeCCHHHHHHHHH
Confidence            96558889999999999999999999999999999998877556699999888889999999999999999999999999


Q ss_pred             HhHhCCCcEEEEeCccccCcccCccccccCCCccccCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEe
Q 020510          193 AAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINL  272 (325)
Q Consensus       193 ~a~~~~~Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~  272 (325)
                      +|++.++|++||++|.+|+.+.+..+.++++++.+++|+++++++|.|++||++|+++..+++|++.|+++|++++|||+
T Consensus       171 ~a~~~~~Pv~i~~~~~~~~~~~~v~p~~~~~~~~~~~Gk~~v~~~g~dv~iia~Gs~~~~a~~Aa~~L~~~Gi~v~vv~~  250 (341)
T 2ozl_B          171 SAIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINM  250 (341)
T ss_dssp             HHHHSSSCEEEEECHHHHTCEEECCHHHHSTTCCCCTTCCEEEECCSSEEEEECSTHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred             HHHhcCCCEEEEEChhhhcCCCCcCCccCCccccccCCceEEeccCCCEEEEEeCHHHHHHHHHHHHHHhcCCCeEEEee
Confidence            99999999999999876543211112234556778899999999999999999999999999999999999999999999


Q ss_pred             eeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcC-CCc
Q 020510          273 RSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFP-PAW  318 (325)
Q Consensus       273 ~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~-~~~  318 (325)
                      ++++|||.+.|.++++++++|||+|||...||+|++|++++.+ +++
T Consensus       251 ~~l~P~d~~~i~~~~~~~~~vv~vEe~~~~Gg~g~~v~~~l~~~~~~  297 (341)
T 2ozl_B          251 RTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAF  297 (341)
T ss_dssp             CEEETCCHHHHHHHHHHHSCEEEECSSCSTTCHHHHHHHHHHHSTTG
T ss_pred             eeecCCCHHHHHHHHhcCCeEEEEecCcccCcHHHHHHHHHHhhhcc
Confidence            9999999999999999999999999999999999999999988 765

>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*

Probab=100.00  E-value=9.2e-62  Score=460.02  Aligned_cols=280  Identities=42%  Similarity=0.684  Sum_probs=256.2

Q ss_pred             cccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEecc
Q 020510           36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM  115 (325)
Q Consensus        36 ~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~  115 (325)
                      ++++|++|+++|.+++++|++|+++++|++.++|+|+.+.+|+++|||+||+|+||+|++|+++|+|+|++|+|||++++
T Consensus         2 ~~~~~~a~~~~L~~l~~~~~~vv~~~~d~~~~~g~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~rp~~~~t   81 (324)
T 1w85_B            2 QMTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGIGGLAIGLALQGFRPVPEIQ   81 (324)
T ss_dssp             EECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEBCS
T ss_pred             cchHHHHHHHHHHHHHhHCcCEEEEcCcccccCCcchhHHHHHHHhCCCcEEEcchhHHHHHHHHHHHHhCCCEEEEEec
Confidence            46899999999999999999999999999988888888889999999999999999999999999999999999999854


Q ss_pred             cccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCcchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhH
Q 020510          116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAI  195 (325)
Q Consensus       116 ~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~  195 (325)
                      ++.|++|++|||++++|+++|+++|++++|++++.+.|..+.+|+||+|.++++++++|||+|++|+|++|++.++++++
T Consensus        82 ~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~~g~~~~~g~~hs~~~~a~~~~iP~l~V~~Psd~~e~~~~l~~a~  161 (324)
T 1w85_B           82 FFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPFGGGVHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAI  161 (324)
T ss_dssp             SGGGGGGTHHHHHTTGGGHHHHTTTSSCCCCEEEEEECSSSCCCTTSSCCCHHHHTTSTTCEEECCSSHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHhhhccCCCcCCEEEEEeccCCCCCCCcccccHHHHHccCCCCEEEeeCCHHHHHHHHHHHH
Confidence            47788999999999999999999999999999987655555578889888889999999999999999999999999999


Q ss_pred             hCCCcEEEEeCccccCcccCccccccCCCccccCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeec
Q 020510          196 RDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSI  275 (325)
Q Consensus       196 ~~~~Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l  275 (325)
                      ++++|+++|+++.+++...   +.++++++.+++||++++++|+|++||++|++++.|++|++.|+++|++++|||++++
T Consensus       162 ~~~~Pv~i~~p~~l~r~~~---~~~~~~~~~~~~Gk~~~~~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l  238 (324)
T 1w85_B          162 RDNDPVIFLEHLKLYRSFR---QEVPEGEYTIPIGKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRTV  238 (324)
T ss_dssp             HSSSCEEEEEETTTSSSCC---EECCSSCCCCCTTCCEEEECCSSEEEEECTTHHHHHHHHHHHHHHTTCCEEEEECSEE
T ss_pred             HcCCCEEEEechHhcCCCC---CCCCCccccccCCceEEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEeeee
Confidence            9999999999988765321   3344556678899999999999999999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcCCCc
Q 020510          276 RPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPAW  318 (325)
Q Consensus       276 ~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~~~~  318 (325)
                      +|||++.|.+++++++++||+|||...||+|++|++++.++++
T Consensus       239 ~P~d~~~i~~~~~~~~~vvvvEe~~~~Gg~g~~v~~~l~~~~~  281 (324)
T 1w85_B          239 QPLDIETIIGSVEKTGRAIVVQEAQRQAGIAANVVAEINERAI  281 (324)
T ss_dssp             ESCCHHHHHHHHHHHSCEEEEEEEETTSSSHHHHHHHHHHHHG
T ss_pred             cCCCHHHHHHHHhhCCcEEEEeCCCcCChHHHHHHHHHHhhCc
Confidence            9999999999999999999999999899999999999987654

>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*

Probab=100.00  E-value=1.5e-61  Score=458.55  Aligned_cols=281  Identities=42%  Similarity=0.677  Sum_probs=256.9

Q ss_pred             ccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEec
Q 020510           35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF  114 (325)
Q Consensus        35 ~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~  114 (325)
                      +++++|++|+++|.+++++|++|+++++|++.++|+|+.+.+|+++|||+||+|+||+|++|+++|+|+|++|+|||+++
T Consensus         2 ~~~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~~p~~~~   81 (324)
T 1umd_B            2 ALMTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAEI   81 (324)
T ss_dssp             CEECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred             CCCcHHHHHHHHHHHHHhcCCCEEEECCcccccCCcchhhHHHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEe
Confidence            46789999999999999999999999999988888887778999999999999999999999999999999999999985


Q ss_pred             ccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCcchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHh
Q 020510          115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAA  194 (325)
Q Consensus       115 ~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a  194 (325)
                      +++.|++|++|||++++|+++|++|+++++|++++.+.|..+++|+||+|.++++|+++|||+|++|+|++|++.+++++
T Consensus        82 t~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~~g~~~~~g~~hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a  161 (324)
T 1umd_B           82 QFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPSGGGVRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAA  161 (324)
T ss_dssp             SSGGGCGGGHHHHHHTTTTHHHHTTTSSCCCCEEEEEECSSSSCGGGSSCCCHHHHHTSTTCEEEECCSHHHHHHHHHHH
T ss_pred             ccHhHHHHHHHHHHHHHHHHHhhcCCCCcCCEEEEEcCCCCCCCCCccchhHHHHHhcCCCCEEEEeCCHHHHHHHHHHH
Confidence            44778899999999999999999999999999998765554556888988888999999999999999999999999999


Q ss_pred             HhCCCcEEEEeCccccCcccCccccccCCCccccCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeee
Q 020510          195 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRS  274 (325)
Q Consensus       195 ~~~~~Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~  274 (325)
                      +++++|+++|+++.+++...   ++++++++.+++||++++++|.|++||++|++++.|++|++.|+++|++++|||+++
T Consensus       162 ~~~~~Pv~i~~p~~l~~~~~---~~~~~~~~~~~~Gk~~~~~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~  238 (324)
T 1umd_B          162 IRDEDPVVFLEPKRLYRSVK---EEVPEEDYTLPIGKAALRREGKDLTLICYGTVMPEVLQAAAELAKAGVSAEVLDLRT  238 (324)
T ss_dssp             HHCSSCEEEEEEGGGSSSCC---EECCSSCCCCCTTCCEEEECCSSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEECCE
T ss_pred             HhcCCCEEEEechHhcCCCC---CCcCCCCccccCCcceEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEece
Confidence            99999999999988765421   344555677889999999999999999999999999999999999999999999999


Q ss_pred             ccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcCCCc
Q 020510          275 IRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPAW  318 (325)
Q Consensus       275 l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~~~~  318 (325)
                      ++|||.+.|.+++++++++||+|||...||+|++|++++.++++
T Consensus       239 l~P~d~~~i~~~~~~~~~vv~vEe~~~~gG~g~~v~~~l~~~~~  282 (324)
T 1umd_B          239 LMPWDYEAVMNSVAKTGRVVLVSDAPRHASFVSEVAATIAEDLL  282 (324)
T ss_dssp             EETCCHHHHHHHHHHHSCEEEEEEEESTTCHHHHHHHHHHHHHG
T ss_pred             ecCCCHHHHHHHHhcCCeEEEEecCCcCCCHHHHHHHHHHHhCc
Confidence            99999999999999999999999999999999999999987653

>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2

Probab=100.00  E-value=2.5e-60  Score=457.05  Aligned_cols=278  Identities=40%  Similarity=0.667  Sum_probs=228.6

Q ss_pred             ccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEec
Q 020510           35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF  114 (325)
Q Consensus        35 ~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~  114 (325)
                      +++++|++|+++|.+++++|++|+++++|++.++++|+.+.+|+++|||+||||+||+|++|+++|+|+|+.|+|||+++
T Consensus        49 ~~~~~~~a~~~aL~~l~~~d~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~d~gIaE~~~v~~a~G~A~~G~rpv~~~  128 (369)
T 1ik6_A           49 MMANMAKAINMALHEEMERDERVVVLGEDVGKKGGVFLVTEGLYERFGPERVIDTPLNEGGILGFAMGMAMAGLKPVAEI  128 (369)
T ss_dssp             EEECHHHHHHHHHHHHHHHCTTEEEEEC---------CTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CcccHHHHHHHHHHHHHccCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEECcccHHHHHHHHHHHHHCCCeeEEEe
Confidence            56789999999999999999999999999987788777778999999999999999999999999999999999999985


Q ss_pred             ccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCcchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHh
Q 020510          115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAA  194 (325)
Q Consensus       115 ~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a  194 (325)
                      .++.|++|++|||++++|+++|++|++.++|++++.++|...++|+||++.++++|+++|||+|++|+|++|++.++++|
T Consensus       129 tf~~Fl~~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg~~g~g~~hs~~~~a~l~~iPnl~V~~Psd~~e~~~ll~~A  208 (369)
T 1ik6_A          129 QFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSGTRGGLYHSNSPEAIFVHTPGLVVVMPSTPYNAKGLLKAA  208 (369)
T ss_dssp             CCC----CCHHHHHHHHHHHHC------CCCCEEEEEECC-----------HHHHHHTCTTCEEECCCSHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCCCCCCccccccHHHHHcCCCCcEEEecCCHHHHHHHHHHH
Confidence            44778899999999999999999999999999998875444457889988889999999999999999999999999999


Q ss_pred             HhCCCcEEEEeCccccCcccCccccccCCCccccCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeee
Q 020510          195 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRS  274 (325)
Q Consensus       195 ~~~~~Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~  274 (325)
                      ++.++|++||+++.+++..   .+.++++++.+++|+++++++|.|++||++|++++.|++|++.|+  | +++|||+++
T Consensus       209 ~~~~~Pv~i~~p~~l~r~~---~~~v~~~~~~~~~G~~~v~~~g~dv~Iia~G~~v~~a~~Aa~~L~--G-~v~Vi~~~~  282 (369)
T 1ik6_A          209 IRGDDPVVFLEPKILYRAP---REEVPEGDYVVEIGKARVAREGDDVTLVTYGAVVHKALEAAERVK--A-SVEVVDLQT  282 (369)
T ss_dssp             HHSSSCEEEEEEGGGSSCC---CEEEECSSCCCCTTCCEEEECCSSEEEEECTTHHHHHHHHHHTSS--S-CEEEEECCE
T ss_pred             HhCCCCEEEEEehhhhccC---CCCcCCCcccccCCceEEEEcCCCEEEEEeCHHHHHHHHHHHHhC--C-CeEEEeeee
Confidence            9999999999998876542   133444566788999999999999999999999999999999997  8 999999999


Q ss_pred             ccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcCCCc
Q 020510          275 IRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPAW  318 (325)
Q Consensus       275 l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~~~~  318 (325)
                      ++|||++.|.+++++++++||+||+...||+|++|++++.++++
T Consensus       283 l~P~d~~~i~~~~~~~~~vvvvEe~~~~GG~g~~v~~~l~~~~~  326 (369)
T 1ik6_A          283 LNPLDFDTVLKSVSKTGRLIIAHDSPKTGGLGAEVRALVAEKAL  326 (369)
T ss_dssp             EETTCHHHHHHHHHHHCCEEEEEEEESTTSHHHHHHHHHHHHSG
T ss_pred             cCCCCHHHHHHHHhccCeEEEEecCCcCCcHHHHHHHHHHhhCc
Confidence            99999999999999999999999999999999999999987764

>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...

Probab=100.00  E-value=1.4e-59  Score=447.99  Aligned_cols=288  Identities=34%  Similarity=0.592  Sum_probs=256.2

Q ss_pred             ccccccCcccccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHh
Q 020510           25 SNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAA  104 (325)
Q Consensus        25 ~~~~~~~~~~~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA  104 (325)
                      ..+++|.. ++++++|++|+++|.+++++|++|+++++|++ .+|+|+.+.+|+++|||+||+|+||+|++|+++|+|+|
T Consensus        10 ~~~~~~~~-~~~~~~~~a~~~aL~~l~~~~~~vv~~~~D~~-~~gt~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A   87 (342)
T 2bfd_B           10 PEPREYGQ-TQKMNLFQSVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIA   87 (342)
T ss_dssp             ----CCSC-EEEECHHHHHHHHHHHHHHHCTTCEEEETTTT-TTCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHH
T ss_pred             CCCCCCCc-cCCccHHHHHHHHHHHHHhcCCCEEEEcCccC-CCcccchHHHHHHHhCCCeEEEcCcCHHHHHHHHHHHH
Confidence            44556653 47889999999999999999999999999998 56788778899999999999999999999999999999


Q ss_pred             ccCCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccC-CEEEEeCCCCCCCCCCCc-chHHHHHHhcCCCcEEEeeC
Q 020510          105 YYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISV-PIVFRGPNGAAAGVGAQH-SHCYAAWYASVPGLKVLSPY  182 (325)
Q Consensus       105 ~~G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~-pvv~~~~~G~~~g~G~tH-s~~~~a~~~~iP~~~V~~P~  182 (325)
                      ++|+|||++++++.|++|++|||++++|+++|++|++.++ |++++.++|. .++|+|| ++.++++|+++|||+|++|+
T Consensus        88 ~~G~rp~~~~tf~~F~~~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g-~~~G~th~~~~d~~~l~~iP~l~V~~Ps  166 (342)
T 2bfd_B           88 VTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGC-VGHGALYHSQSPEAFFAHCPGIKVVIPR  166 (342)
T ss_dssp             HTTCCEEEECSSGGGCGGGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESC-CSSCGGGSSCCCHHHHHTSTTCEEECCS
T ss_pred             HCCCeeEEEecchhHHHHHHHHHHHHHHHHHhhhcCCccCCCEEEEEecCC-CCCCcchhhHhHHHHHhcCCCcEEEeeC
Confidence            9999999985447788999999999999999999999999 9999977543 2467776 56888999999999999999


Q ss_pred             CHHHHHHHHHHhHhCCCcEEEEeCccccCcccCccccccCCCccccCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHh
Q 020510          183 SSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAK  262 (325)
Q Consensus       183 d~~e~~~~l~~a~~~~~Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~  262 (325)
                      |++|++.++++++++++|+++|+++.+++...   +.++.+++.+++|+++++++|.|++||++|++++.|++|++.|++
T Consensus       167 d~~e~~~~l~~a~~~~~Pv~i~~p~~l~r~~~---~~~~~~~~~~~~G~~~v~~~g~dv~iia~G~~~~~a~~Aa~~L~~  243 (342)
T 2bfd_B          167 SPFQAKGLLLSCIEDKNPCIFFEPKILYRAAA---EEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAKE  243 (342)
T ss_dssp             SHHHHHHHHHHHHHSSSCEEEEEEGGGTTSCC---EEEESSCCCCCSSCCEEEECCSSEEEEECTTHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCcEEEEecchhcCCCC---CCCCCcccceeCCceEEeccCCCEEEEEECHHHHHHHHHHHHHHh
Confidence            99999999999999999999999977665432   234445677889999999999999999999999999999999999


Q ss_pred             c-CCcEEEEEeeeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcCCCc
Q 020510          263 E-GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPAW  318 (325)
Q Consensus       263 ~-Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~~~~  318 (325)
                      + |++++|||+++++|||.+.|.+++++++++||+|||...||+|++|++++.++++
T Consensus       244 ~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vv~vEe~~~~gg~g~~v~~~l~~~~~  300 (342)
T 2bfd_B          244 KLGVSCEVIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQEECF  300 (342)
T ss_dssp             HHCCCEEEEECCEEESCCHHHHHHHHHHHSCEEEEEEEESTTCHHHHHHHHHHHHHG
T ss_pred             hcCCCEEEEeeeecCCCCHHHHHHHHhcCCEEEEEEeCccCCcHHHHHHHHHHhhCc
Confidence            9 9999999999999999999999999999999999998899999999999987654

>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B

Probab=100.00  E-value=1.8e-58  Score=439.85  Aligned_cols=281  Identities=38%  Similarity=0.615  Sum_probs=251.8

Q ss_pred             cccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEe
Q 020510           34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVE  113 (325)
Q Consensus        34 ~~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~  113 (325)
                      ++++++|++|+++|.+++++|++++++++|++.++|+|+.+.+|+++|||+||||+||+|++|+++|+|+|++|+|||++
T Consensus         2 ~~~~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~~~gisE~~~~~~a~G~A~~G~rp~~~   81 (338)
T 1qs0_B            2 TTTMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTAVGMGAYGLRPVVE   81 (338)
T ss_dssp             EEECCHHHHHHHHHHHHHHHCTTEEEEETTCSSSCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEE
T ss_pred             CCcchHHHHHHHHHHHHHhhCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEEccccHHHHHHHHHHHHhCCCEEEEE
Confidence            35678999999999999999999999999999888888878999999999999999999999999999999999999998


Q ss_pred             cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCc-chHHHHHHhcCCCcEEEeeCCHHHHHHHHH
Q 020510          114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQH-SHCYAAWYASVPGLKVLSPYSSEDARGLLK  192 (325)
Q Consensus       114 ~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tH-s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~  192 (325)
                      ++++.|++|++|||++++|+++|++|++.++|++++.+.|. +++|++| +|+++++|+++|||+|++|+|++|++++++
T Consensus        82 ~t~~~F~~~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g-~~~G~th~s~~d~~~l~~iP~l~V~~Psd~~e~~~~l~  160 (338)
T 1qs0_B           82 IQFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGG-GIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLI  160 (338)
T ss_dssp             CSCGGGCGGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECC-SSSCCSSSSCCCHHHHTTSTTCEEECCCSHHHHHHHHH
T ss_pred             eccHhHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCC-CCCCcccccccHHHHHhcCCCCEEEeeCCHHHHHHHHH
Confidence            54477889999999999999999999999999999986543 4567666 578899999999999999999999999999


Q ss_pred             HhHhCCCcEEEEeCccccCcccC---ccc----------cccCCCccccCCceEEeeeCCcEEEEEechhHHHHHHHHHH
Q 020510          193 AAIRDPDPVVFLENELLYGESFP---VSA----------EVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEI  259 (325)
Q Consensus       193 ~a~~~~~Pv~ir~~~~l~~~~~p---~~~----------~~~~~~~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~  259 (325)
                      +|+++++|++||+++.+++...+   ..+          .++++++.+++|+++++++|.|++||++|++++.|++|++.
T Consensus       161 ~A~~~~~Pv~i~~p~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~~~~~~g~dv~iva~G~~~~~a~~Aa~~  240 (338)
T 1qs0_B          161 ASIECDDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPHSAVPDGYYTVPLDKAAITRPGNDVSVLTYGTTVYVAQVAAEE  240 (338)
T ss_dssp             HHHHSSSCEEEEEEGGGSSSCCCSCSSSCCCCSTTSTTCEEESSCCCCCTTCCCEEECCSSCEEEECTTHHHHHHHHHHH
T ss_pred             HHHhcCCcEEEEEchHhhcCcccccccCccchhhcccccccCCCCcccccCceeEecCCCCEEEEEeCHHHHHHHHHHHH
Confidence            99999999999998766654322   000          34445567789999999999999999999999999999997


Q ss_pred             HHhcCCcEEEEEeeeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcCCCc
Q 020510          260 LAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPAW  318 (325)
Q Consensus       260 L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~~~~  318 (325)
                         +|++++|||+++++|||.+.|.++++++++++|+|||...||+|++|++++.++++
T Consensus       241 ---~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~gG~g~~V~~~l~~~~~  296 (338)
T 1qs0_B          241 ---SGVDAEVIDLRSLWPLDLDTIVESVKKTGRCVVVHEATRTCGFGAELVSLVQEHCF  296 (338)
T ss_dssp             ---HCCCCEEEECSEEESCCHHHHHHHHHHHSCEEEEESSCSTTSTHHHHHHHHHHHSS
T ss_pred             ---cCCCEEEEeecccCCCCHHHHHHHHhcCCEEEEEecCCcCCcHHHHHHHHHHHhcc
Confidence               69999999999999999999999999999999999999999999999999987764

>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*

Probab=100.00  E-value=1.8e-51  Score=418.87  Aligned_cols=268  Identities=25%  Similarity=0.328  Sum_probs=234.4

Q ss_pred             ccccCcccccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc
Q 020510           27 LRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY  106 (325)
Q Consensus        27 ~~~~~~~~~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~  106 (325)
                      ++.|+. ++++++|++|+++|.+++++|++++++++|++.+  ++  +..|.++| |+||||+||+|++|+++|+|||+.
T Consensus       304 ~~~~~~-~~~~a~r~a~~~~L~~l~~~d~~vv~~~aD~~~~--~~--~~~~~~~~-p~R~~d~gIaE~~~v~~a~G~A~~  377 (616)
T 3mos_A          304 LPSYKV-GDKIATRKAYGQALAKLGHASDRIIALDGDTKNS--TF--SEIFKKEH-PDRFIECYIAEQNMVSIAVGCATR  377 (616)
T ss_dssp             CCCCCT-TCBCCHHHHHHHHHHHHHHHCTTEEEEESSCHHH--HS--HHHHHHHC-GGGEEECCSCHHHHHHHHHHHHGG
T ss_pred             Cccccc-ccchHHHHHHHHHHHHHHhhCCCEEEEeCCcCCC--cc--hhhHHHhC-CCCeEEcCccHHHHHHHHHHHHHc
Confidence            345554 3678999999999999999999999999999743  22  47899999 999999999999999999999999


Q ss_pred             CC-eeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC-CCC-CCCCCCc-chHHHHHHhcCCCcEEEeeC
Q 020510          107 GL-KPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAA-AGVGAQH-SHCYAAWYASVPGLKVLSPY  182 (325)
Q Consensus       107 G~-~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~-~g~G~tH-s~~~~a~~~~iP~~~V~~P~  182 (325)
                      |+ +|++.+| +.|++|++|||+++ ++        +++|++++..+ |.+ +.+|+|| ++.++++|+++|||+|++|+
T Consensus       378 G~~~~~~~~f-~~Fl~~a~dqi~~~-a~--------~~~~v~~v~~~~g~~~G~dG~tH~~~ed~a~l~~iP~l~V~~P~  447 (616)
T 3mos_A          378 NRTVPFCSTF-AAFFTRAFDQIRMA-AI--------SESNINLCGSHCGVSIGEDGPSQMALEDLAMFRSVPTSTVFYPS  447 (616)
T ss_dssp             GCCEEEEEEE-GGGGGGGHHHHHHH-HH--------TTCCEEEEEESBSGGGCTTCGGGCBSSHHHHHHTSTTEEEECCC
T ss_pred             CCCCEEEEeh-HHHHHHHHHHHHHH-HH--------hCCCeEEEEECCCccccCCCCcccCHHHHHHhcCCCCCEEEecC
Confidence            97 7888887 67789999999986 54        46788877654 664 4589998 35677999999999999999


Q ss_pred             CHHHHHHHHHHhHhCCCcEEEEeCccccCcccCccccccCCCccccCCceEEeeeCCc--EEEEEechhHHHHHHHHHHH
Q 020510          183 SSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKD--VTITAFSKIVGLSLKAAEIL  260 (325)
Q Consensus       183 d~~e~~~~l~~a~~~~~Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~~gk~~vl~~G~d--v~Iia~G~~~~~a~~Aa~~L  260 (325)
                      |++|++.+++++++.++|+++|.+|.    ..   +.++...+.+++|+++++++|+|  ++||++|++++.|++|++.|
T Consensus       448 d~~e~~~~l~~a~~~~gp~~ir~~r~----~~---p~~~~~~~~~~~Gka~vl~eg~d~dv~iva~G~~v~~al~Aa~~L  520 (616)
T 3mos_A          448 DGVATEKAVELAANTKGICFIRTSRP----EN---AIIYNNNEDFQVGQAKVVLKSKDDQVTVIGAGVTLHEALAAAELL  520 (616)
T ss_dssp             SHHHHHHHHHHHHTCCSEEEEECCSS----CC---BCCSCTTCCCCTTCCEEEECCSSEEEEEECCTHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCCEEEEEeCC----CC---CccCCCcccccCCeEEEEEeCCCCCEEEEEeCHHHHHHHHHHHHH
Confidence            99999999999999999999997654    22   22333445678999999999976  99999999999999999999


Q ss_pred             HhcCCcEEEEEeeeccCCCHHHHHHHHhCC-CeEEEEecCCCCCCHHHHHHHHHcCCC
Q 020510          261 AKEGISAEVINLRSIRPLDRSTINASVRKT-NRLVTVEEGFPQHGVGAEIWCAFFPPA  317 (325)
Q Consensus       261 ~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~-~~vvvvEe~~~~GGlg~~v~~~l~~~~  317 (325)
                      +++||+++|||++|++|||+++|.++++++ ++|||+|||+..||+|++|++.|.+++
T Consensus       521 ~~~Gi~v~Vidlr~l~PlD~e~i~~~~~~~~~~vvvvEe~~~~GG~G~~v~~~l~~~~  578 (616)
T 3mos_A          521 KKEKINIRVLDPFTIKPLDRKLILDSARATKGRILTVEDHYYEGGIGEAVSSAVVGEP  578 (616)
T ss_dssp             HTTTCEEEEEECSEEESCCHHHHHHHHHHTTTEEEEEEEEESTTSHHHHHHHHHTTCT
T ss_pred             HhcCCCEEEEEeCccCCCCHHHHHHHHHhcCCEEEEEcCCCCCcCHHHHHHHHHHhcC
Confidence            999999999999999999999999999999 899999999999999999999999875

>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}

Probab=100.00  E-value=2e-50  Score=412.70  Aligned_cols=258  Identities=26%  Similarity=0.325  Sum_probs=231.8

Q ss_pred             cccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEecc
Q 020510           36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM  115 (325)
Q Consensus        36 ~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~  115 (325)
                      ..+|+++|+++|.+++++|++|+++++|+...+   ++ .+|+++| |+||||+||+|++|+++|+|+|++|+|||+++|
T Consensus       321 ~~~~~~~~~~~l~~~~~~d~~v~~i~~d~~~~~---~~-~~f~~~~-~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~~~~  395 (629)
T 2o1x_A          321 AYSWSAAFGEAVTEWAKTDPRTFVVTPAMREGS---GL-VEFSRVH-PHRYLDVGIAEEVAVTTAAGMALQGMRPVVAIY  395 (629)
T ss_dssp             CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTT---TC-HHHHHHC-GGGEEECCSCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             hHHHHHHHHHHHHHHhhhCcCEEEEeccccCCc---Ch-HHHHHhc-CcceEeccccHHHHHHHHHHHHHcCCEEEEEec
Confidence            678999999999999999999999999986432   33 7899999 999999999999999999999999999999996


Q ss_pred             cccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC-CCCCCCCCCcch-HHHHHHhcCCCcEEEeeCCHHHHHHHHHH
Q 020510          116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGVGAQHSH-CYAAWYASVPGLKVLSPYSSEDARGLLKA  193 (325)
Q Consensus       116 ~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~~g~G~tHs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~  193 (325)
                       +.|++|++|||++++|+        +++|++++.+. |..+++|+||++ .+.++||++|||+|++|+|++|++.++++
T Consensus       396 -~~F~~~a~dqi~~~~a~--------~~~pvv~~~~~~g~~g~dG~tH~~~~d~a~~r~iP~l~v~~P~d~~e~~~~~~~  466 (629)
T 2o1x_A          396 -STFLQRAYDQVLHDVAI--------EHLNVTFCIDRAGIVGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKY  466 (629)
T ss_dssp             -HHHHGGGHHHHHHTTTT--------TTCCCEEEEESBBCCCTTCTTTCBCSHHHHTTTSTTCEEECCSSHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHhh--------cCCCEEEEEECCccCCCCCcccCccHHHHHHHccCCcEEEecCCHHHHHHHHHH
Confidence             67899999999999996        58999998875 555558999966 44599999999999999999999999999


Q ss_pred             hHhCCCcEEEEeCccccCcccCcccccc-CCCccccCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEe
Q 020510          194 AIRDPDPVVFLENELLYGESFPVSAEVL-DSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINL  272 (325)
Q Consensus       194 a~~~~~Pv~ir~~~~l~~~~~p~~~~~~-~~~~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~  272 (325)
                      |++.++|+++|++|..+    +   .++ ++.+.+++|+++++++|.|++||++|++++.|++|++.|+    +++|||+
T Consensus       467 a~~~~~Pv~i~~~r~~~----~---~~~~~~~~~~~~G~~~~~~~g~dv~iva~G~~v~~a~~Aa~~L~----~~~Vi~~  535 (629)
T 2o1x_A          467 AQTHDGPFAIRYPRGNT----A---QVPAGTWPDLKWGEWERLKGGDDVVILAGGKALDYALKAAEDLP----GVGVVNA  535 (629)
T ss_dssp             HHHSSSCEEEECCSSBC----C---CCCTTCCCCCCTTCCEEEECCSSEEEEECHHHHHHHHHHHTTCT----TEEEEEC
T ss_pred             HHhCCCCEEEEecCCCC----C---CCcccccccccCCceEEEeeCCCEEEEEecHHHHHHHHHHHHhc----CCEEEee
Confidence            99999999999887632    1   111 2345678999999999999999999999999999999996    8999999


Q ss_pred             eeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcCCCc
Q 020510          273 RSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPAW  318 (325)
Q Consensus       273 ~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~~~~  318 (325)
                      +|++|||++.|.+++++++++||+|||...||+|++|++++.++++
T Consensus       536 ~~~~Pld~~~i~~~~~~~~~vv~vEe~~~~gG~g~~v~~~l~~~~~  581 (629)
T 2o1x_A          536 RFVKPLDEEMLREVGGRARALITVEDNTVVGGFGGAVLEALNSMNL  581 (629)
T ss_dssp             CEEESCCHHHHHHHHHHCSEEEEEEEEESSSSHHHHHHHHHHHTTC
T ss_pred             CCCCCCcHHHHHHHHhhCCcEEEEecCCCCCCHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999999999999988774

>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}

Probab=100.00  E-value=6.2e-50  Score=408.66  Aligned_cols=259  Identities=22%  Similarity=0.327  Sum_probs=229.9

Q ss_pred             ccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEec
Q 020510           35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF  114 (325)
Q Consensus        35 ~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~  114 (325)
                      .+.+|+++|+++|.+++++|++|+++++|+...+   ++ .+|+++| |+||||+||+|++|+++|+|+|+.|+|||+++
T Consensus       317 ~~~~~~~~~~~~l~~~~~~d~~v~~~~~d~~~~~---~~-~~~~~~~-~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~~~  391 (621)
T 2o1s_A          317 GLPSYSKIFGDWLCETAAKDNKLMAITPAMREGS---GM-VEFSRKF-PDRYFDVAIAEQHAVTFAAGLAIGGYKPIVAI  391 (621)
T ss_dssp             -CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTT---TC-HHHHHHC-TTTEEECCSCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             chHHHHHHHHHHHHHHHhhCcCEEEEeCcccCCc---Ch-HHHHHhC-CCceEecCcCHHHHHHHHHHHHHCCCEEEEEe
Confidence            4579999999999999999999999999986432   33 7899999 99999999999999999999999999999999


Q ss_pred             ccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC-CCCCCCCCCcch-HHHHHHhcCCCcEEEeeCCHHHHHHHHH
Q 020510          115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGVGAQHSH-CYAAWYASVPGLKVLSPYSSEDARGLLK  192 (325)
Q Consensus       115 ~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~~g~G~tHs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~  192 (325)
                      | +.|++|++|||++++|+        +++|++++.+. |..+.+|+||++ .+.++|+++|||+|++|+|++|++.+++
T Consensus       392 ~-~~F~~~a~dqi~~~~a~--------~~~pvv~~~~~~g~~g~~G~tH~~~~d~~~~~~iP~l~v~~P~d~~e~~~~l~  462 (621)
T 2o1s_A          392 Y-STFLQRAYDQVLHDVAI--------QKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLY  462 (621)
T ss_dssp             E-TTGGGGGHHHHHHTTTT--------TTCCCEEEEESCBCCCTTCGGGCBCSHHHHTTTSTTCEEECCSSHHHHHHHHH
T ss_pred             h-HhHHHHHHHHHHHHHHh--------cCCCEEEEEECCccCCCCCCccCchHHHHHHhcCCCCEEEecCCHHHHHHHHH
Confidence            6 66889999999999996        58999999875 555559999976 4559999999999999999999999999


Q ss_pred             HhHhC-CCcEEEEeCccccCcccCccccccCCCccccCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEE
Q 020510          193 AAIRD-PDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVIN  271 (325)
Q Consensus       193 ~a~~~-~~Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~  271 (325)
                      +|++. ++|+|||++|..+.    . .+.++. +.+++|+++++++|+|++||++|++++.|++|     ++||+++|||
T Consensus       463 ~a~~~~~~Pv~i~~~r~~~~----~-~~~~~~-~~~~~G~~~~~~~g~dv~iva~G~~~~~a~~A-----~~Gi~v~Vi~  531 (621)
T 2o1s_A          463 TGYHYNDGPSAVRYPRGNAV----G-VELTPL-EKLPIGKGIVKRRGEKLAILNFGTLMPEAAKV-----AESLNATLVD  531 (621)
T ss_dssp             HHHHCCSSCEEEECCSSBCC----C-CCCCCC-CCCCTTCCEEEECCSSEEEEEESTTHHHHHHH-----HHHHTCEEEE
T ss_pred             HHHHcCCCCEEEEeCCCCCC----C-CCCCcc-ccccCCceEEeecCCCEEEEEecHHHHHHHHH-----cCCCCEEEEe
Confidence            99998 89999998876432    1 111222 56789999999999999999999999999999     4699999999


Q ss_pred             eeeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcCCCc
Q 020510          272 LRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPAW  318 (325)
Q Consensus       272 ~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~~~~  318 (325)
                      ++|++|||++.|.+++++++++||+|||...||+|++|++++.++++
T Consensus       532 ~~~~~P~d~~~i~~~~~~~~~vv~vEe~~~~gg~g~~v~~~l~~~~~  578 (621)
T 2o1s_A          532 MRFVKPLDEALILEMAASHEALVTVEENAIMGGAGSGVNEVLMAHRK  578 (621)
T ss_dssp             CCEEESCCHHHHHHHHHHCSEEEEEEEEESTTSHHHHHHHHHHHTTC
T ss_pred             cCccCCCCHHHHHHHHccCCeEEEEECCCCCCCHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999988774

>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*

Probab=100.00  E-value=1.8e-46  Score=381.95  Aligned_cols=249  Identities=15%  Similarity=0.157  Sum_probs=211.0

Q ss_pred             ccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeeEEe
Q 020510           35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVVE  113 (325)
Q Consensus        35 ~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~  113 (325)
                      .++++|++++++|.++++.+|+++++++|++.++.+.   -.+.++|||+||||+||+||+|+++|+|||+. |++||++
T Consensus       336 ~~~a~r~a~~~~l~~l~~~~p~~v~~~aDl~~s~~~~---~~~~~~f~p~R~~d~GIaE~~~v~~a~GlA~~gG~~P~~~  412 (632)
T 3l84_A          336 KDLATRDSNGEILNVLAKNLEGFLGGSADLGPSNKTE---LHSMGDFVEGKNIHFGIREHAMAAINNAFARYGIFLPFSA  412 (632)
T ss_dssp             CCBCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCC---CTTSCBTTTSSEEECCSCHHHHHHHHHHHHHHSSCEEEEE
T ss_pred             cchHHHHHHHHHHHHHHhhCCCEEEEecccCCccCcc---hhcccccCCCCeEEeCccHHHHHHHHHHHHHcCCCEEEEE
Confidence            5789999999999999999999999999997655441   12336788999999999999999999999999 8999999


Q ss_pred             cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeC-CCCC-CCCCCCcc-hHHHHHHhcCCCcEEEeeCCHHHHHHH
Q 020510          114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAA-AGVGAQHS-HCYAAWYASVPGLKVLSPYSSEDARGL  190 (325)
Q Consensus       114 ~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~-~g~G~tHs-~~~~a~~~~iP~~~V~~P~d~~e~~~~  190 (325)
                      +| +.|+.|++||||+ .|+        +++||+++.. +|.+ +.+|+||+ +.++++||+||||+|++|+|++|++.+
T Consensus       413 ~f-~~F~~~~~~~ir~-~a~--------~~~pv~~~~t~~g~g~G~dG~THq~~ed~a~lr~iP~l~V~~P~d~~e~~~~  482 (632)
T 3l84_A          413 TF-FIFSEYLKPAARI-AAL--------MKIKHFFIFTHDSIGVGEDGPTHQPIEQLSTFRAMPNFLTFRPADGVENVKA  482 (632)
T ss_dssp             EE-GGGHHHHHHHHHH-HHH--------HTCCCEEEEECCSGGGCTTCGGGSCSSHHHHHHHSSSCEEECCSSHHHHHHH
T ss_pred             ec-HHHHHHHHHHHHH-Hhc--------cCCCEEEEEECCCcCCCCCCCCCCCHhHHHHHhcCCCCEEEecCCHHHHHHH
Confidence            96 6778999999986 676        5899999863 4554 44899993 466799999999999999999999999


Q ss_pred             HHHhHhCCCcEEEEeCccccCcccCccccccCC-CccccCCce-EEeee--CCcEEEEEechhHHHHHHHHHHHHhcCCc
Q 020510          191 LKAAIRDPDPVVFLENELLYGESFPVSAEVLDS-SFCLPIGKA-KIERE--GKDVTITAFSKIVGLSLKAAEILAKEGIS  266 (325)
Q Consensus       191 l~~a~~~~~Pv~ir~~~~l~~~~~p~~~~~~~~-~~~~~~gk~-~vl~~--G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~  266 (325)
                      +++|++.++|+|+|++|...         ++.+ .+..+++++ +++++  |+|++||++|++++.|++|++.|+++||+
T Consensus       483 l~~A~~~~~Pv~ir~~r~~~---------~~~~~~~~~~~~~g~~vl~~~~g~dvtiia~G~~v~~al~Aa~~L~~~Gi~  553 (632)
T 3l84_A          483 WQIALNADIPSAFVLSRQKL---------KALNEPVFGDVKNGAYLLKESKEAKFTLLASGSEVWLCLESANELEKQGFA  553 (632)
T ss_dssp             HHHHHHCSSCEEEECCSSCB---------CCCCCCSBCCGGGSSEEEECCTTCSEEEEECGGGHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHhCCCCEEEEEcCCCC---------CCCccccccccccccEEEEecCCCCEEEEEechHHHHHHHHHHHHHhcCCC
Confidence            99999999999999876521         1222 233455665 88898  89999999999999999999999999999


Q ss_pred             EEEEEeeeccCCCHHH--HHHHHhCCCeEEEEecCCCCCCHHH
Q 020510          267 AEVINLRSIRPLDRST--INASVRKTNRLVTVEEGFPQHGVGA  307 (325)
Q Consensus       267 ~~Vi~~~~l~P~d~~~--l~~~~~~~~~vvvvEe~~~~GGlg~  307 (325)
                      ++|||++|++|||.+.  +++++.+ ++|||+|||.. .|+++
T Consensus       554 ~~Vi~~~~i~PlD~~~~~~~~sv~~-~~vv~vE~~~~-~g~~~  594 (632)
T 3l84_A          554 CNVVSMPCFELFEKQDKAYQERLLK-GEVIGVEAAHS-NELYK  594 (632)
T ss_dssp             EEEEECSBHHHHHTSCHHHHHHHCC-SEEEEECSSCC-GGGGG
T ss_pred             eEEEecCcCCCcchhHHHHHHHhcC-CCEEEEeCChh-hhHHH
Confidence            9999999999999874  6677777 78999999985 45554

>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*

Probab=100.00  E-value=1.7e-46  Score=385.01  Aligned_cols=258  Identities=18%  Similarity=0.216  Sum_probs=212.6

Q ss_pred             cccCcccccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCcc-ccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc
Q 020510           28 RNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY-KISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY  106 (325)
Q Consensus        28 ~~~~~~~~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~-~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~  106 (325)
                      +.|..+ +++++|++++++|.++++++|+++++++|++.+++++ +.+.+|.++|+|+||||+||+||+|+++|+|||+.
T Consensus       371 ~~~~~~-~~~a~R~a~g~~L~~~~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~~~R~~d~GIaE~~mv~~A~GlA~~  449 (690)
T 3m49_A          371 PTYELG-SKAATRNSSGAVINAIAESVPSFFGGSADLAGSNKTYMNNEKDFTRDDYSGKNIWYGVREFAMGAAMNGIALH  449 (690)
T ss_dssp             CCCCTT-CEEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTSCBCBTTBTTCCEEECCSCHHHHHHHHHHHHHH
T ss_pred             cccccc-cchHHHHHHHHHHHHHHhhCCCEEEEeCcccccCCccccccccchhhcCCCceEEcCchHHHHHHHHHHHHHc
Confidence            345554 7889999999999999999999999999998777664 55678888887999999999999999999999999


Q ss_pred             -CCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC-CCC-CCCCCCcc-hHHHHHHhcCCCcEEEeeC
Q 020510          107 -GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAA-AGVGAQHS-HCYAAWYASVPGLKVLSPY  182 (325)
Q Consensus       107 -G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~-~g~G~tHs-~~~~a~~~~iP~~~V~~P~  182 (325)
                       |++||++||.. |+.++..|||+ +|+        +++||+++.++ |.+ +.+|+||+ ..++++||+||||+|++|+
T Consensus       450 gG~~P~~~tf~~-Fs~f~~~air~-~al--------~~lpVv~v~~~~gigvG~dG~THq~ied~a~lr~iPnl~V~~Pa  519 (690)
T 3m49_A          450 GGLKTYGGTFFV-FSDYLRPAIRL-AAL--------MQLPVTYVFTHDSIAVGEDGPTHEPIEQLAALRAMPNVSVIRPA  519 (690)
T ss_dssp             SSCEEEEEEEGG-GGGGGHHHHHH-HHH--------HTCCCEEEEECCSGGGCTTCGGGCCSSHHHHHHTSTTCEEECCS
T ss_pred             CCCEEEEEecHH-HHHHHHHHHHH-HHh--------cCCCcEEEEECCCcCCCCCCCccCCHHHHHHHhcCCCCEEEeeC
Confidence             89999998633 33333345775 676        58999999764 553 45999993 3667999999999999999


Q ss_pred             CHHHHHHHHHHhHhC-CCcEEEEeCccccCcccCccccccCC----CccccCCceEEeeeCC----cEEEEEechhHHHH
Q 020510          183 SSEDARGLLKAAIRD-PDPVVFLENELLYGESFPVSAEVLDS----SFCLPIGKAKIEREGK----DVTITAFSKIVGLS  253 (325)
Q Consensus       183 d~~e~~~~l~~a~~~-~~Pv~ir~~~~l~~~~~p~~~~~~~~----~~~~~~gk~~vl~~G~----dv~Iia~G~~~~~a  253 (325)
                      |++|++.++++|++. ++|++||++|.    ..|   .++.+    .+.++.|+ +++++|+    |++||++|++++.|
T Consensus       520 d~~E~~~~l~~Ai~~~~~Pv~ir~~R~----~~p---~~~~~~~~~~~~~~~G~-~vlr~g~~g~~dvtiia~G~~v~~A  591 (690)
T 3m49_A          520 DGNESVAAWRLALESTNKPTALVLTRQ----DLP---TLEGAKDDTYEKVAKGA-YVVSASKKETADVILLATGSEVSLA  591 (690)
T ss_dssp             SHHHHHHHHHHHHHCSSSCEEEECCSS----EEE---CCHHHHTTHHHHHHTSC-EEEECCSSSSCSEEEEECTTHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCCEEEEeecc----cCC---CCCccccccccccCCCe-EEEEecCCCCCCEEEEEechHHHHH
Confidence            999999999999998 78999998765    222   11111    14567786 6889885    99999999999999


Q ss_pred             HHHHHHHHhcCCcEEEEEeeeccCCCH--HHHHHHHh--CCCeEEEEecCCCCCC
Q 020510          254 LKAAEILAKEGISAEVINLRSIRPLDR--STINASVR--KTNRLVTVEEGFPQHG  304 (325)
Q Consensus       254 ~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~--~~l~~~~~--~~~~vvvvEe~~~~GG  304 (325)
                      ++|++.|+++||+++|||++|++|||.  +.+++++.  +++++||+|||...|+
T Consensus       592 l~Aa~~L~~~GI~~~Vid~~~i~p~D~~d~~~~~~v~~~~~~~~v~vEe~~~~G~  646 (690)
T 3m49_A          592 VEAQKALAVDGVDASVVSMPSMDRFEAQTAEYKESVLPKAVTKRFAIEMGATFGW  646 (690)
T ss_dssp             HHHHHHHHHTTCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEECSSCCTTT
T ss_pred             HHHHHHHHhcCCCeEEEecccCCcCccccHHHHHHHhhccCCeEEEEECCchhhH
Confidence            999999999999999999999999986  44555554  5678999999998763

>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}

Probab=100.00  E-value=4.8e-46  Score=381.65  Aligned_cols=268  Identities=16%  Similarity=0.155  Sum_probs=220.8

Q ss_pred             ccccCcccccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCcc-ccchhHHHHh-----CC----CceeechhhHHHH
Q 020510           27 LRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY-KISKGLLEKY-----GP----ERVLDTPITEAGF   96 (325)
Q Consensus        27 ~~~~~~~~~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~-~~~~~~~~~~-----gp----~R~i~~GIaE~~~   96 (325)
                      ++.|..+.+++++|++|+++|.+++++||++|++++|++.+++++ +.+.+|.++|     ||    +||||+||+||+|
T Consensus       365 ~p~~~~~~~~~atr~a~~~~L~~l~~~~p~vv~~saDl~~s~~t~~~~~~~f~~~~~~~~~~p~~~~~R~id~GIaE~~m  444 (700)
T 3rim_A          365 LPHWEPGSKALATRAASGAVLSALGPKLPELWGGSADLAGSNNTTIKGADSFGPPSISTKEYTAHWYGRTLHFGVREHAM  444 (700)
T ss_dssp             CCCCCTTSSCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEESCGGGCCSSCCEETTCCEEECCSCHHHH
T ss_pred             cccccccccchHHHHHHHHHHHHHHhhCCCEEEEeCCccCCCCcccccchhhcccccccccCCcccCCceeecCccHHHH
Confidence            345665557899999999999999999999999999998776653 2346788888     46    6999999999999


Q ss_pred             HHHHHHHhcc-CCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeC-CCCC-CCCCCCcc-hHHHHHHhc
Q 020510           97 TGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAA-AGVGAQHS-HCYAAWYAS  172 (325)
Q Consensus        97 vg~A~GlA~~-G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~-~g~G~tHs-~~~~a~~~~  172 (325)
                      +++|+|||+. |++||+++| ..|+.++.+|||+ +|+        +++||+++.+ +|.+ +.+|+||+ ..++++||+
T Consensus       445 v~~A~GlA~~gG~~Pv~~tF-~~F~d~~~~~ir~-~al--------~~lpvv~v~thdg~gvG~dG~THq~ied~a~lr~  514 (700)
T 3rim_A          445 GAILSGIVLHGPTRAYGGTF-LQFSDYMRPAVRL-AAL--------MDIDTIYVWTHDSIGLGEDGPTHQPIEHLSALRA  514 (700)
T ss_dssp             HHHHHHHHHHSSCEEEEEEE-GGGGGGGHHHHHH-HHH--------HTCCCEEEEECCSGGGCTTCTTTSCSSHHHHHHT
T ss_pred             HHHHHHHHHcCCCEEEEEec-HHHHHHHHHHHHH-hcC--------CCCCEEEEEeCCCcccCCCCCccCChhHHHHHhc
Confidence            9999999999 999999987 4567788889986 776        5899999875 4554 45899992 356799999


Q ss_pred             CCCcEEEeeCCHHHHHHHHHHhHhCC---CcEEEEeCccccCcccCccccccCC-CccccCCceEEeeeCC--------c
Q 020510          173 VPGLKVLSPYSSEDARGLLKAAIRDP---DPVVFLENELLYGESFPVSAEVLDS-SFCLPIGKAKIEREGK--------D  240 (325)
Q Consensus       173 iP~~~V~~P~d~~e~~~~l~~a~~~~---~Pv~ir~~~~l~~~~~p~~~~~~~~-~~~~~~gk~~vl~~G~--------d  240 (325)
                      ||||+|++|+|+.|++.++++|++.+   +|+|||++|..    .|   .++.+ .+.+++|+ +++++|+        |
T Consensus       515 iPnl~V~~Pad~~e~~~~l~~Ai~~~~~~~Pv~ir~~r~~----~~---~~~~~~~~~~~~G~-~vlr~g~~~~~~~~~d  586 (700)
T 3rim_A          515 IPRLSVVRPADANETAYAWRTILARRNGSGPVGLILTRQG----VP---VLDGTDAEGVARGG-YVLSDAGGLQPGEEPD  586 (700)
T ss_dssp             STTCEEECCSSHHHHHHHHHHHHTTTTCSSCEEEECCSSE----EC---CCTTCCHHHHHHSC-EEEECCSCCCTTCCCS
T ss_pred             CCCCEEEeCCCHHHHHHHHHHHHHccCCCCCEEEEecccc----CC---CcCcccccccCCCc-EEEecCCccccCCCCC
Confidence            99999999999999999999999985   59999987652    22   22233 35677887 7899987        9


Q ss_pred             EEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHH--HHHHHHhC--CCeEEEEecCCCCCCHHHHHHHHHcCC
Q 020510          241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRS--TINASVRK--TNRLVTVEEGFPQHGVGAEIWCAFFPP  316 (325)
Q Consensus       241 v~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~--~l~~~~~~--~~~vvvvEe~~~~GGlg~~v~~~l~~~  316 (325)
                      ++||++|++++.|++|++.|+++||+++|||++|++|||.+  .+++.+.+  ++++||+||+...||     .+++.++
T Consensus       587 vtiia~G~~v~~al~Aa~~L~~~Gi~~~VVd~~~i~p~D~~~~~~~~~v~~~~~~~~vtvEe~~~~G~-----~~~~~~~  661 (700)
T 3rim_A          587 VILIATGSEVQLAVAAQTLLADNDILARVVSMPCLEWFEAQPYEYRDAVLPPTVSARVAVEAGVAQCW-----HQLVGDT  661 (700)
T ss_dssp             EEEEECGGGHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHSCHHHHHHHSCTTCCCEEEECSSCSGGG-----HHHHCTT
T ss_pred             EEEEEechHHHHHHHHHHHHHhcCCCeEEEEeccccccCcccHHHHHHHhcccceEEEEEeCCCchhH-----HHHHhcC
Confidence            99999999999999999999999999999999999999994  34444543  678999999998765     3555544


Q ss_pred             C
Q 020510          317 A  317 (325)
Q Consensus       317 ~  317 (325)
                      +
T Consensus       662 ~  662 (700)
T 3rim_A          662 G  662 (700)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*

Probab=100.00  E-value=6e-46  Score=381.86  Aligned_cols=256  Identities=19%  Similarity=0.213  Sum_probs=216.5

Q ss_pred             cccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCcc-ccchhHHHH---hCC---CceeechhhHHHHHHHHHHHhcc
Q 020510           34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY-KISKGLLEK---YGP---ERVLDTPITEAGFTGIGVGAAYY  106 (325)
Q Consensus        34 ~~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~-~~~~~~~~~---~gp---~R~i~~GIaE~~~vg~A~GlA~~  106 (325)
                      ++++++|++++++|.++++.+|++|++++|++.+++++ +.+.+|+++   | |   +||||+||+||+|+++|+|||+.
T Consensus       392 ~~~~atR~A~~~~L~~l~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~~~-p~~~~R~~d~GIaE~~mv~~AaGlA~~  470 (711)
T 3uk1_A          392 GETVATRKASQQTIEGLAAVLPELLGGSADLTGSNLTNWKASKAVRANADGP-GVQWGNHINYGVREFGMSAAINGLVLH  470 (711)
T ss_dssp             CCCEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCEECSSSS-SEECCSEEECCSCHHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHhhCCCEEEEeccccCcCCcccccchhhhhhhccC-CCCCCcEEEeCccHHHHHHHHHHHHHc
Confidence            46789999999999999999999999999998766653 234578888   9 8   99999999999999999999995


Q ss_pred             -CCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeC-CCCC-CCCCCCcc-hHHHHHHhcCCCcEEEeeC
Q 020510          107 -GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAA-AGVGAQHS-HCYAAWYASVPGLKVLSPY  182 (325)
Q Consensus       107 -G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~-~g~G~tHs-~~~~a~~~~iP~~~V~~P~  182 (325)
                       |++||+++| +.|++|+++|||+ +|+        +++||+++.. +|.+ +.+|+||+ ..++++||+||||+|++|+
T Consensus       471 ~G~~Pv~~~f-~~F~~~~~~~ir~-~a~--------~~lpv~~v~thdg~gvG~dG~THq~~ed~a~lr~iPnl~V~~Pa  540 (711)
T 3uk1_A          471 GGYKPFGGTF-LTFSDYSRNALRV-AAL--------MKVPSIFVFTHDSIGLGEDGPTHQSVEHVASLRLIPNLDVWRPA  540 (711)
T ss_dssp             SSCEEEEEEE-GGGHHHHHHHHHH-HHH--------HTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCS
T ss_pred             CCCEEEEEEh-HHHHHHHHHHHHH-hhh--------cCCCEEEEEECCCcCcCCCCCccCChhHHHHHhcCCCCEEEecC
Confidence             999999996 7788999999987 676        5899999874 4554 45999993 3667999999999999999


Q ss_pred             CHHHHHHHHHHhHhCCCcEEEEeCccccCcccCccccccCCC---ccccCCceEEeee--C----CcEEEEEechhHHHH
Q 020510          183 SSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSS---FCLPIGKAKIERE--G----KDVTITAFSKIVGLS  253 (325)
Q Consensus       183 d~~e~~~~l~~a~~~~~Pv~ir~~~~l~~~~~p~~~~~~~~~---~~~~~gk~~vl~~--G----~dv~Iia~G~~~~~a  253 (325)
                      |++|++.++++|++.++|+|||++|.    ..|   .++.++   +.++.|++ ++++  |    +|++||++|+++++|
T Consensus       541 d~~E~~~~l~~Ai~~~~Pv~ir~~r~----~~p---~~~~~~~~~~~i~~G~~-vl~~~~G~~~~~dvtiia~G~~v~~a  612 (711)
T 3uk1_A          541 DTVETAVAWTYAVAHQHPSCLIFSRQ----NLA---FNARTDAQLANVEKGGY-VLRDWDEEIVARKIILIATGSEVELA  612 (711)
T ss_dssp             SHHHHHHHHHHHHHSSSCEEEECCSS----EEC---CCCCCHHHHHHGGGSSE-EEECCCSSCCSEEEEEEECTTHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCCEEEEeeCC----CCC---CCCCccccccccCCCeE-EEEecCCCCCCCCEEEEEecHHHHHH
Confidence            99999999999999999999998765    222   222222   45677774 6664  7    799999999999999


Q ss_pred             HHHHHHHHhcCCcEEEEEeeeccCCCHHH--HHHHHhCCCe-EEEEecCCCCCCHHHHH
Q 020510          254 LKAAEILAKEGISAEVINLRSIRPLDRST--INASVRKTNR-LVTVEEGFPQHGVGAEI  309 (325)
Q Consensus       254 ~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~--l~~~~~~~~~-vvvvEe~~~~GGlg~~v  309 (325)
                      ++|++.|+++||+++|||++|++|||.+.  +++++.++++ +|++|++.. +|+++.+
T Consensus       613 l~Aa~~L~~~GI~~~Vid~~si~plD~~~~~~~~sv~~~~~~~V~vE~~~~-~g~~~~~  670 (711)
T 3uk1_A          613 MKAVEPLAQQGIAARVVSMPSSDVFDRQDAEYRERVLPHGVRRVAIEAGVT-DFWRKYV  670 (711)
T ss_dssp             HHHHHHHHHTTEEEEEEECSCHHHHHTSCHHHHHHHSCTTSCEEEECSSCS-GGGHHHH
T ss_pred             HHHHHHHHHcCCCeEEEecCcCCccchhHHHHHHHhhccCCeEEEEeCCcc-ccHHHHh
Confidence            99999999999999999999999999886  5677877764 899999874 5676654

>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*

Probab=100.00  E-value=7.1e-46  Score=381.59  Aligned_cols=259  Identities=19%  Similarity=0.254  Sum_probs=217.5

Q ss_pred             ccCcccccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCcc--ccchhHHH------HhCCCceeechhhHHHHHHHH
Q 020510           29 NYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY--KISKGLLE------KYGPERVLDTPITEAGFTGIG  100 (325)
Q Consensus        29 ~~~~~~~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~--~~~~~~~~------~~gp~R~i~~GIaE~~~vg~A  100 (325)
                      .|...++++++|++++++|.++++.+|+++++++|++.+++++  ++ ..|++      +| |+||||+||+||+|+++|
T Consensus       348 ~~~~~~~~~a~r~a~~~~L~~~~~~~p~v~~~~aDl~~s~~~~~~g~-~~f~~~~~~~~~~-p~R~~d~gIaE~~~vg~a  425 (680)
T 1gpu_A          348 TYTAKDSAVATRKLSETVLEDVYNQLPELIGGSADLTPSNLTRWKEA-LDFQPPSSGSGNY-SGRYIRYGIREHAMGAIM  425 (680)
T ss_dssp             CCCTTSCCBCHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTC-CEECCTTTSSEET-TCCEEECCSCHHHHHHHH
T ss_pred             hhccCCcchHHHHHHHHHHHHHHhhCCCEEEEecccccccccccccc-cccccccccccCC-CCceecCCccHHHHHHHH
Confidence            3422347889999999999999999999999999998776654  22 35777      99 999999999999999999


Q ss_pred             HHHhccC-Ce-eEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeC-CCCCC-CCCCCcch--HHHHHHhcCC
Q 020510          101 VGAAYYG-LK-PVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAA-GVGAQHSH--CYAAWYASVP  174 (325)
Q Consensus       101 ~GlA~~G-~~-p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~~-g~G~tHs~--~~~a~~~~iP  174 (325)
                      +|||+.| ++ ||+++| +.|+.++++|||+ +|+        +++||+++.+ +|.+. .+|+|| |  .++++||++|
T Consensus       426 ~GlA~~Gg~~~P~~~~f-~~F~~~~~~air~-~a~--------~~lpvv~v~t~~g~g~G~dG~tH-q~~edla~lr~iP  494 (680)
T 1gpu_A          426 NGISAFGANYKPYGGTF-LNFVSYAAGAVRL-SAL--------SGHPVIWVATHDSIGVGEDGPTH-QPIETLAHFRSLP  494 (680)
T ss_dssp             HHHHHHCTTCEEEEEEE-HHHHGGGHHHHHH-HHH--------HTCCCEEEEECCSGGGCTTCTTT-CCSSHHHHHHTSS
T ss_pred             HHHHhcCCCceEEEeeh-HHHHHHHHHHHHH-HHh--------cCCCEEEEEeCCccccCCCCCcc-CCHHHHHHhcCCC
Confidence            9999998 99 999987 5567799999988 676        5899999874 45554 499999 5  4459999999


Q ss_pred             CcEEEeeCCHHHHHHHHHHhHhC-CCcEEEEeCccccCcccCccccccCCCcc-ccCCceEEeeeC--CcEEEEEechhH
Q 020510          175 GLKVLSPYSSEDARGLLKAAIRD-PDPVVFLENELLYGESFPVSAEVLDSSFC-LPIGKAKIEREG--KDVTITAFSKIV  250 (325)
Q Consensus       175 ~~~V~~P~d~~e~~~~l~~a~~~-~~Pv~ir~~~~l~~~~~p~~~~~~~~~~~-~~~gk~~vl~~G--~dv~Iia~G~~~  250 (325)
                      ||+|++|+|++|++.++++|++. ++|+|||++|.    ..   +.++.+++. +++| ++++++|  .|++||++|+++
T Consensus       495 ~l~V~~Pad~~e~~~~l~~A~~~~~~Pv~i~~~r~----~~---~~~~~~~~~~~~~G-~~vl~~g~~~dvtiva~G~~v  566 (680)
T 1gpu_A          495 NIQVWRPADGNEVSAAYKNSLESKHTPSIIALSRQ----NL---PQLEGSSIESASKG-GYVLQDVANPDIILVATGSEV  566 (680)
T ss_dssp             SCEEECCCSHHHHHHHHHHHHHCSSCCEEEECCSS----CB---CCCTTCCHHHHTTS-CEEEECCSSCSEEEEECTHHH
T ss_pred             CCEEEecCCHHHHHHHHHHHHHhCCCcEEEEecCC----CC---CCCCCcchhhccCC-CEEEecCCCCCEEEEEEcHHH
Confidence            99999999999999999999997 89999998765    22   223333344 6677 5888888  899999999999


Q ss_pred             HHHHHHHHHHHhcCCcEEEEEeeeccCCCHHH--HHHHHhCCC-eEEEEecCCCCCCHHHHH
Q 020510          251 GLSLKAAEILAKEGISAEVINLRSIRPLDRST--INASVRKTN-RLVTVEEGFPQHGVGAEI  309 (325)
Q Consensus       251 ~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~--l~~~~~~~~-~vvvvEe~~~~GGlg~~v  309 (325)
                      +.|++|++.|+++||+++|||++|++|||.+.  +.+++.+++ ++||+||+.. +|+++.|
T Consensus       567 ~~al~Aa~~L~~~Gi~~~Vvd~~~l~pld~~~~~~~~sv~~~~~~~v~vE~~~~-~g~~~~v  627 (680)
T 1gpu_A          567 SLSVEAAKTLAAKNIKARVVSLPDFFTFDKQPLEYRLSVLPDNVPIMSVEVLAT-TCWGKYA  627 (680)
T ss_dssp             HHHHHHHHHHHTTTCCEEEEECSCHHHHHHSCHHHHHHHSCSSSCEEEECSSCS-TTGGGTC
T ss_pred             HHHHHHHHHHHhcCCCEEEEEcCCCCcchhhhHHHHHHHhccCCceEEEeCCcc-ccHHHhc
Confidence            99999999999999999999999999999985  555666664 5699999987 7887754

>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*

Probab=100.00  E-value=1.7e-45  Score=378.23  Aligned_cols=256  Identities=18%  Similarity=0.195  Sum_probs=216.7

Q ss_pred             ccccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCcc-ccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCee
Q 020510           33 AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY-KISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKP  110 (325)
Q Consensus        33 ~~~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~-~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~-G~~p  110 (325)
                      +++++++|++++++|.++++.+|+++++++|++.+++++ +.+..|+++| |+||||+||+||+|+++|+|||+. |++|
T Consensus       351 ~~~~~~~r~a~~~~L~~l~~~~p~v~~~~aDl~~s~~~~~~~~~~f~~~~-p~R~id~GIaE~~~v~~a~GlA~~gG~~P  429 (669)
T 2r8o_A          351 NPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDA-AGNYIHYGVREFGMTAIANGISLHGGFLP  429 (669)
T ss_dssp             SCCCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCCCTTCCBTTTCT-TCSEEECCSCHHHHHHHHHHHHHHSSCEE
T ss_pred             CCccHHHHHHHHHHHHHHHhhCCCeEEecCcccccccccccccccccccC-CCCeeecchhHHHHHHHHHHHHHcCCCeE
Confidence            347889999999999999999999999999998777765 3346789999 999999999999999999999999 8999


Q ss_pred             EEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeC-CCCCC-CCCCCcch--HHHHHHhcCCCcEEEeeCCHHH
Q 020510          111 VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAA-GVGAQHSH--CYAAWYASVPGLKVLSPYSSED  186 (325)
Q Consensus       111 ~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~~-g~G~tHs~--~~~a~~~~iP~~~V~~P~d~~e  186 (325)
                      |+.+| +.|+.++++||++ +|+        +++|++++.+ +|.+. .+|+|| |  .+.++||++|||+|++|+|++|
T Consensus       430 ~~~tf-~~F~~~~~~~ir~-~a~--------~~lpvv~~~t~~g~~~G~dG~tH-q~~edla~lr~iP~l~V~~Pad~~E  498 (669)
T 2r8o_A          430 YTSTF-LMFVEYARNAVRM-AAL--------MKQRQVMVYTHDSIGLGEDGPTH-QPVEQVASLRVTPNMSTWRPCDQVE  498 (669)
T ss_dssp             EEEEE-GGGGGTTHHHHHH-HHH--------TTCCCEEEEECCSGGGCTTCTTT-CCSSHHHHHHTSTTCEEECCSSHHH
T ss_pred             EEeeh-HHHHHHHHHHHHH-HHh--------cCCCEEEEEeCCCcCcCCCCCcc-CCHHHHHHhcCCCCCEEEecCCHHH
Confidence            99987 5567799999998 676        5899999875 45554 499999 5  4459999999999999999999


Q ss_pred             HHHHHHHhHhC-CCcEEEEeCccccCcccCccccccCCCc---cccCCceEEeee--C-CcEEEEEechhHHHHHHHHHH
Q 020510          187 ARGLLKAAIRD-PDPVVFLENELLYGESFPVSAEVLDSSF---CLPIGKAKIERE--G-KDVTITAFSKIVGLSLKAAEI  259 (325)
Q Consensus       187 ~~~~l~~a~~~-~~Pv~ir~~~~l~~~~~p~~~~~~~~~~---~~~~gk~~vl~~--G-~dv~Iia~G~~~~~a~~Aa~~  259 (325)
                      ++.++++|++. ++|+|||++|..+.       .++.+++   .+++| .+++++  | .|++||++|+++++|++|++.
T Consensus       499 ~~~~l~~a~~~~~~Pv~i~~~r~~~~-------~~~~~~~~~~~~~~G-~~vl~~~~g~~dv~iva~G~~v~~al~Aa~~  570 (669)
T 2r8o_A          499 SAVAWKYGVERQDGPTALILSRQNLA-------QQERTEEQLANIARG-GYVLKDCAGQPELIFIATGSEVELAVAAYEK  570 (669)
T ss_dssp             HHHHHHHHHHCSSSCEEEECCSSEEC-------CCCCCHHHHHHGGGS-CEEEECCSSSCSEEEEECGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcEEEEeCCCCCC-------CCCCccchhhhccCC-CEEEeccCCCCCEEEEEECHHHHHHHHHHHH
Confidence            99999999997 89999998876331       2222222   25677 478888  8 899999999999999999999


Q ss_pred             HHhcCCcEEEEEeeeccCCCHHH---HHHHHhCC-CeEEEEecCCCCCCHHHHH
Q 020510          260 LAKEGISAEVINLRSIRPLDRST---INASVRKT-NRLVTVEEGFPQHGVGAEI  309 (325)
Q Consensus       260 L~~~Gi~~~Vi~~~~l~P~d~~~---l~~~~~~~-~~vvvvEe~~~~GGlg~~v  309 (325)
                      |+++||+++|||++|++|||.+.   +.+.++++ +++||+||+.. +|+++.+
T Consensus       571 L~~~Gi~~~Vv~~~~~~pld~~~~~~~~~v~~~~~~~vv~vE~~~~-~g~~~~~  623 (669)
T 2r8o_A          571 LTAEGVKARVVSMPSTDAFDKQDAAYRESVLPKAVTARVAVEAGIA-DYWYKYV  623 (669)
T ss_dssp             HHHHTCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEEEEEEG-GGGHHHH
T ss_pred             HHhcCCCeEEEEeccCCccccchHHHHHHhccccCceEEEEeCCch-hhHHHHh
Confidence            99999999999999999999885   55555443 67999999987 7887643

>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1

Probab=100.00  E-value=9.4e-45  Score=372.96  Aligned_cols=260  Identities=17%  Similarity=0.239  Sum_probs=217.2

Q ss_pred             ccCcccccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccc-cchhHHH-HhCCCceeechhhHHHHHHHHHHHhcc
Q 020510           29 NYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYK-ISKGLLE-KYGPERVLDTPITEAGFTGIGVGAAYY  106 (325)
Q Consensus        29 ~~~~~~~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~-~~~~~~~-~~gp~R~i~~GIaE~~~vg~A~GlA~~  106 (325)
                      .|...++++++|++++++|.++++.+|+++++++|++.++++.. -+..|++ +| |+||||+||+||+|+++|+|||+.
T Consensus       358 ~~~~~~~~~a~r~a~~~~L~~i~~~~p~v~~~~aDl~~s~~~~~~g~~~f~~~~~-~~R~id~gIaE~~~v~~a~GlA~~  436 (675)
T 1itz_A          358 KYTPESPGDATRNLSQQCLNALANVVPGLIGGSADLASSNMTLLKMFGDFQKDTA-EERNVRFGVREHGMGAICNGIALH  436 (675)
T ss_dssp             CCCTTSCCBCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCCTTCT-TCCBCCCCSCHHHHHHHHHHHHTT
T ss_pred             hhccCCcchHHHHHHHHHHHHHHHhCCCEEEEeccccccccccccccccccccCC-CCCeEeecccHHHHHHHHHHHHhc
Confidence            34233478899999999999999999999999999986655421 1124786 99 999999999999999999999999


Q ss_pred             C--CeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeC-CCCCC-CCCCCcchHH--HHHHhcCCCcEEEe
Q 020510          107 G--LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAA-GVGAQHSHCY--AAWYASVPGLKVLS  180 (325)
Q Consensus       107 G--~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~~-g~G~tHs~~~--~a~~~~iP~~~V~~  180 (325)
                      |  ++||+++| +.|+.++++||++ +|+        +++|++++.. +|.+. .+|+|| |+.  .++||++|||+|++
T Consensus       437 G~~~~P~~~t~-~~F~~~~~~~ir~-~a~--------~~lpvv~~~t~~g~g~G~dG~tH-q~~edla~lr~iP~l~V~~  505 (675)
T 1itz_A          437 SPGFVPYCATF-FVFTDYMRGAMRI-SAL--------SEAGVIYVMTHDSIGLGEDGPTH-QPIEHLVSFRAMPNILMLR  505 (675)
T ss_dssp             CTTCEEEEEEE-GGGHHHHHHHHHH-HHH--------HTCCCEEEEECCSGGGCTTCTTT-CCSSHHHHHHSSSSCEEEC
T ss_pred             CCCCEEEEEEH-HHHHHHHHHHHHH-HHh--------cCCCEEEEEECCccccCCCCCCc-CcHHHHHHhccCCCeEEEE
Confidence            9  99999997 5567799999987 676        5899999874 45554 499999 644  59999999999999


Q ss_pred             eCCHHHHHHHHHHhHhC-CCcEEEEeCccccCcccCccccccCCCc-cccCCceEEeee---C--CcEEEEEechhHHHH
Q 020510          181 PYSSEDARGLLKAAIRD-PDPVVFLENELLYGESFPVSAEVLDSSF-CLPIGKAKIERE---G--KDVTITAFSKIVGLS  253 (325)
Q Consensus       181 P~d~~e~~~~l~~a~~~-~~Pv~ir~~~~l~~~~~p~~~~~~~~~~-~~~~gk~~vl~~---G--~dv~Iia~G~~~~~a  253 (325)
                      |+|++|++.++++|++. ++|+|||++|.    ..|   .++.+.+ .+++| ++++++   |  .|++||++|+++++|
T Consensus       506 Pad~~e~~~~l~~a~~~~~~Pv~i~~~r~----~~p---~~~~~~~~~~~~G-a~vl~~~~~G~~~dv~iva~G~~v~~a  577 (675)
T 1itz_A          506 PADGNETAGAYKVAVLNRKRPSILALSRQ----KLP---HLPGTSIEGVEKG-GYTISDNSTGNKPDLIVMGTGSELEIA  577 (675)
T ss_dssp             CCSHHHHHHHHHHHHHCTTSCEEEEECSS----CBC---CCTTCCHHHHTTS-SEEEEECCSTTCCSEEEEECGGGHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCcEEEEecCC----CCC---CCCCccccccccC-CEEEecccCCCCCCEEEEEECHHHHHH
Confidence            99999999999999997 89999998865    222   2233334 46788 678888   7  899999999999999


Q ss_pred             HHHHHHHHhcCCcEEEEEeeeccCCCHHH--HHHHHhCC--CeEEEEecCCCCCCHHHHH
Q 020510          254 LKAAEILAKEGISAEVINLRSIRPLDRST--INASVRKT--NRLVTVEEGFPQHGVGAEI  309 (325)
Q Consensus       254 ~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~--l~~~~~~~--~~vvvvEe~~~~GGlg~~v  309 (325)
                      ++|++.|+++||+++|||++|++|||.+.  +.+.+.++  +++||+||+.. +|+++.+
T Consensus       578 l~Aa~~L~~~Gi~v~Vv~~~~~~pld~~~~~~~~~v~~~~~~~vv~vE~~~~-~G~~~~~  636 (675)
T 1itz_A          578 AKAADELRKEGKTVRVVSFVSWELFDEQSDEYKESVLPAAVTARISIEAGST-LGWQKYV  636 (675)
T ss_dssp             HHHHHHHHHTTCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEECSSCC-TTTHHHH
T ss_pred             HHHHHHHHhcCCcEEEEEeccCcccccchHHHHHHHhccCCceEEEEECCcc-ccHHHhc
Confidence            99999999999999999999999999885  44455555  67999999997 7888754

>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}

Probab=100.00  E-value=7.4e-45  Score=372.04  Aligned_cols=254  Identities=20%  Similarity=0.219  Sum_probs=210.9

Q ss_pred             cccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCc-cccchhHH-HHhCCCceeechhhHHHHHHHHHHHhcc-CCee
Q 020510           34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGA-YKISKGLL-EKYGPERVLDTPITEAGFTGIGVGAAYY-GLKP  110 (325)
Q Consensus        34 ~~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~-~~~~~~~~-~~~gp~R~i~~GIaE~~~vg~A~GlA~~-G~~p  110 (325)
                      ++++++|++++++|.++++.+|+++++++|++.++++ ++.+.+|. ++| |+||||+||+||+|+++|+|||+. |++|
T Consensus       352 ~~~~a~r~a~~~aL~~~~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~-p~R~~d~GIaE~~~v~~a~GlA~~gG~~P  430 (663)
T 3kom_A          352 PVKVATRKASQMVLEVLCKNMPEMFGGSADLTGSNNTNWSGSVWLNNTQE-GANYLSYGVREFGMAAIMNGLSLYGGIKP  430 (663)
T ss_dssp             CCCEEHHHHHHHHHHHHHHHCTTEEEEECCC--CCSCCCTTCCBTTTCST-TCCEEECCSCHHHHHHHHHHHHHHSSCEE
T ss_pred             CcchhHHHHHHHHHHHHHhhCCCEEEEecccCCCCCcccccccccccccC-CCCeEecCccHHHHHHHHHHHHHcCCCEE
Confidence            4678999999999999999999999999999877765 44556784 899 999999999999999999999999 9999


Q ss_pred             EEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEe-CCCCC-CCCCCCcc-hHHHHHHhcCCCcEEEeeCCHHHH
Q 020510          111 VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAA-AGVGAQHS-HCYAAWYASVPGLKVLSPYSSEDA  187 (325)
Q Consensus       111 ~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~-~~G~~-~g~G~tHs-~~~~a~~~~iP~~~V~~P~d~~e~  187 (325)
                      |+++| +.|+.|+++|||+ +|+        +++||+++. .+|.+ +.+|+||+ +.++++||++|||+|+.|+|++|+
T Consensus       431 ~~~tf-~~F~~~~~~~ir~-~a~--------~~lpvv~~~t~~g~g~G~dG~THq~~ed~a~lr~iPnl~V~~Pad~~e~  500 (663)
T 3kom_A          431 YGGTF-LVFSDYSRNAIRM-SAL--------MKQPVVHVMSHDSIGLGEDGPTHQPIEHVPSLRLIPNLSVWRPADTIET  500 (663)
T ss_dssp             EEEEE-GGGHHHHHHHHHH-HHH--------TTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCCSHHHH
T ss_pred             EEEeh-HHHHHHHHHHHHH-HHh--------cCCCEEEEEeCCccccCCCCCCcCCHHHHHHHhcCCCcEEEeeCCHHHH
Confidence            99996 6788999999986 676        589999986 34554 45899993 366799999999999999999999


Q ss_pred             HHHHHHhHh-CCCcEEEEeCccccCcccCccccccCCC---ccccCCceEEeee--CCcEEEEEechhHHHHHHHHHHHH
Q 020510          188 RGLLKAAIR-DPDPVVFLENELLYGESFPVSAEVLDSS---FCLPIGKAKIERE--GKDVTITAFSKIVGLSLKAAEILA  261 (325)
Q Consensus       188 ~~~l~~a~~-~~~Pv~ir~~~~l~~~~~p~~~~~~~~~---~~~~~gk~~vl~~--G~dv~Iia~G~~~~~a~~Aa~~L~  261 (325)
                      +.++++|++ .++|+|||++|.    ..|   .++.++   +.++.| .+++++  |.|++||++|++++.|++|++.|+
T Consensus       501 ~~~l~~A~~~~~~Pv~ir~~r~----~~p---~~~~~~~~~~~~~~G-~~vl~~~~g~dvtiia~G~~v~~al~Aa~~L~  572 (663)
T 3kom_A          501 MIAWKEAVKSKDTPSVMVLTRQ----NLM---PVVQTQHQVANIARG-GYLVKDNPDAKLTIVATGSEVELAVKVANEFE  572 (663)
T ss_dssp             HHHHHHHHHCSSCCEEEECCSS----EEC---CCCCCHHHHHHHTTT-CEEEECCTTCSCEEEECTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCEEEEccCc----cCC---CcCccccchhcccCc-eEEEEecCCCCEEEEEecHHHHHHHHHHHHHH
Confidence            999999999 689999998764    222   222222   235566 467777  799999999999999999999999


Q ss_pred             hcCCcEEEEEeeeccCCCHHH--HHHHHhCC-CeEEEEecCCCCCCHHH
Q 020510          262 KEGISAEVINLRSIRPLDRST--INASVRKT-NRLVTVEEGFPQHGVGA  307 (325)
Q Consensus       262 ~~Gi~~~Vi~~~~l~P~d~~~--l~~~~~~~-~~vvvvEe~~~~GGlg~  307 (325)
                      ++||+++|||++|++|||.+.  +++++.++ ..+|++|++.. .|+.+
T Consensus       573 ~~Gi~~~Vi~~~si~p~D~~~~~~~~~vl~~~~~~v~vE~~~~-~g~~~  620 (663)
T 3kom_A          573 KKGIKLNVASIPCVEVFATQAHEYKKTVIKDDIPAVFVEMAQP-DMWYK  620 (663)
T ss_dssp             HTTCCCEEEECSCHHHHHTSCHHHHHHHSCTTSCEEEECSSCC-GGGGG
T ss_pred             hcCCCeEEEEcCcCCcccccHHHHHHHhcCCCCeEEEEecCCc-ccHHH
Confidence            999999999999999999987  55556555 35899998764 44444

>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}

Probab=100.00  E-value=2.7e-45  Score=375.79  Aligned_cols=255  Identities=20%  Similarity=0.170  Sum_probs=214.2

Q ss_pred             cccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccc-cchhHHH-HhCCCceeechhhHHHHHHHHHHHhccC-Cee
Q 020510           34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYK-ISKGLLE-KYGPERVLDTPITEAGFTGIGVGAAYYG-LKP  110 (325)
Q Consensus        34 ~~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~-~~~~~~~-~~gp~R~i~~GIaE~~~vg~A~GlA~~G-~~p  110 (325)
                      ++++++|++++++|.++++.+|+++++++|++.+++++. .+.+|++ +| |+||||+||+|++|+++|+|||+.| ++|
T Consensus       346 ~~~~~~r~a~~~~L~~~~~~~p~~~~~~aDl~~s~~~~~~~~~~f~~~~~-p~R~i~~gIaE~~~~~~a~GlA~~Gg~~P  424 (651)
T 2e6k_A          346 DKPIATRAASGRALNLLAPRLPELLGGSADLTPSNNTKAEGMEDFSRANP-LGRYLHFGVREHAMGAILNGLNLHGGYRA  424 (651)
T ss_dssp             CSCBCHHHHHHHHHHHHGGGCTTEEEEESSCHHHHTCSCTTCCBCBTTBT-TCCEEECCSCHHHHHHHHHHHHHHSSCEE
T ss_pred             CccHHHHHHHHHHHHHHHhhCCCEEEEeCccccccccccccccccCccCC-CCceEecCcCHHHHHHHHHHHHHcCCCEE
Confidence            367899999999999999999999999999987666542 3456887 99 9999999999999999999999998 999


Q ss_pred             EEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEe-CCCCCCC-CCCCcchHH--HHHHhcCCCcEEEeeCCHHH
Q 020510          111 VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAAG-VGAQHSHCY--AAWYASVPGLKVLSPYSSED  186 (325)
Q Consensus       111 ~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~-~~G~~~g-~G~tHs~~~--~a~~~~iP~~~V~~P~d~~e  186 (325)
                      |+++|.. |+.++++|||. .|+        +++|++++. .+|.+.| +|+|| |..  .++||++|||+|++|+|++|
T Consensus       425 ~~~t~~~-F~~~~~~air~-~a~--------~~lpvv~~~t~~g~g~G~dG~tH-q~~edla~lr~iP~l~V~~Pad~~E  493 (651)
T 2e6k_A          425 YGGTFLV-FSDYMRPAIRL-AAL--------MGVPTVFVFTHDSIALGEDGPTH-QPVEHLMSLRAMPNLFVIRPADAYE  493 (651)
T ss_dssp             EEEEEGG-GGGGSHHHHHH-HHH--------HTCCCEEEEECCSGGGCTTCTTT-CCSSHHHHHHTSTTCEEECCSSHHH
T ss_pred             EEEeHHH-HHHHHHHHHHH-HHh--------cCCCEEEEEECCccccCCCcCcc-ccHHHHHHhcCCCCcEEEecCCHHH
Confidence            9999844 56688899877 676        589999985 4555544 99999 644  49999999999999999999


Q ss_pred             HHHHHHHhHhC-CCcEEEEeCccccCcccCccccccCCCc-cccCCceEEeeeC--CcEEEEEechhHHHHHHHHHHHHh
Q 020510          187 ARGLLKAAIRD-PDPVVFLENELLYGESFPVSAEVLDSSF-CLPIGKAKIEREG--KDVTITAFSKIVGLSLKAAEILAK  262 (325)
Q Consensus       187 ~~~~l~~a~~~-~~Pv~ir~~~~l~~~~~p~~~~~~~~~~-~~~~gk~~vl~~G--~dv~Iia~G~~~~~a~~Aa~~L~~  262 (325)
                      ++.++++|++. ++|+|||++|..+    |   .++.+++ .++.| ++++++|  .|++||++|+++++|++|++.|++
T Consensus       494 ~~~~l~~A~~~~~~Pv~i~~~r~~~----~---~~~~~~~~~~~~G-~~vl~~g~~~dv~iva~G~~v~~al~Aa~~L~~  565 (651)
T 2e6k_A          494 TFYAWLVALRRKEGPTALVLTRQAV----P---LLSPEKARGLLRG-GYVLEDVEEPQGVLVATGSEVHLALRAQALLRE  565 (651)
T ss_dssp             HHHHHHHHHHCCSSCEEEECCSSCB----C---CCCHHHHGGGGGS-SEEEECCSSCSEEEEECTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCEEEEEeCCCC----C---CCCcchhhhhcCC-CEEEeeCCCCCEEEEEECHHHHHHHHHHHHHHh
Confidence            99999999997 8999999887532    1   1222222 35567 5788888  899999999999999999999999


Q ss_pred             cCCcEEEEEeeeccCCCHHH---HHHHHhCCCeEEEEecCCCCCCHHHHH
Q 020510          263 EGISAEVINLRSIRPLDRST---INASVRKTNRLVTVEEGFPQHGVGAEI  309 (325)
Q Consensus       263 ~Gi~~~Vi~~~~l~P~d~~~---l~~~~~~~~~vvvvEe~~~~GGlg~~v  309 (325)
                      +||+++|||++|++|||.+.   +.+.+++++++||+||+.. +|+++.+
T Consensus       566 ~Gi~~~Vv~~~~~~p~d~~~~~~~~~v~~~~~~vv~vE~~~~-~G~~~~v  614 (651)
T 2e6k_A          566 KGVRVRVVSLPSFELFAAQPEAYRKEVLPPGLPVVAVEAGAS-LGWERYA  614 (651)
T ss_dssp             TTCCEEEEECSCHHHHHTSCHHHHHHHSCTTSCEEEECSSCC-TTGGGTC
T ss_pred             cCCcEEEEecCcCCccccccHHHHHHHhCcCCeEEEEeCCcc-CchHHhC
Confidence            99999999999999999985   5544444468999999987 8888764

>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1

Probab=100.00  E-value=4.1e-45  Score=375.33  Aligned_cols=254  Identities=18%  Similarity=0.172  Sum_probs=218.2

Q ss_pred             cccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCcccc---chhHHH-HhCCCceeechhhHHHHHHHHHHHhcc-CC
Q 020510           34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKI---SKGLLE-KYGPERVLDTPITEAGFTGIGVGAAYY-GL  108 (325)
Q Consensus        34 ~~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~---~~~~~~-~~gp~R~i~~GIaE~~~vg~A~GlA~~-G~  108 (325)
                      ++++++|++++++|.++++++|+++++++|++.+++++..   +..|.+ +| |+||||+||+|++|+++|+|||+. |+
T Consensus       349 ~~~~a~r~a~~~~L~~l~~~~p~vv~~~aDl~~s~~~~~~~~~~~~f~~~~~-~~R~id~GIaE~~~~~~a~GlA~~GG~  427 (673)
T 1r9j_A          349 SSAIATRKASENCLAVLFPAIPALMGGSADLTPSNLTRPASANLVDFSSSSK-EGRYIRFGVREHAMCAILNGLDAHDGI  427 (673)
T ss_dssp             CSCEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCSCGGGCCCBCBTTBT-TCCEEECCSCHHHHHHHHHHHHHHSSC
T ss_pred             ccchHHHHHHHHHHHHHHhhCCCEEEEeccccccccccccCcccccccccCC-CCCeEecCccHHHHHHHHHHHHhcCCC
Confidence            4689999999999999999999999999999877666420   234887 99 999999999999999999999999 59


Q ss_pred             eeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeC-CCCCC-CCCCCcchH--HHHHHhcCCCcEEEeeCCH
Q 020510          109 KPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAA-GVGAQHSHC--YAAWYASVPGLKVLSPYSS  184 (325)
Q Consensus       109 ~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~~-g~G~tHs~~--~~a~~~~iP~~~V~~P~d~  184 (325)
                      +||+++| +.|+.|+++||++ +|+        +++|++++.. +|.+. .+|+|| |+  +.++|++||||+|+.|+|+
T Consensus       428 ~P~~~~~-~~F~~~~~~~ir~-~a~--------~~~pvv~~~t~~g~g~G~dG~tH-q~~edla~lr~iP~l~V~~Pad~  496 (673)
T 1r9j_A          428 IPFGGTF-LNFIGYALGAVRL-AAI--------SHHRVIYVATHDSIGVGEDGPTH-QPVELVAALRAMPNLQVIRPSDQ  496 (673)
T ss_dssp             EEEEEEE-GGGGGGGHHHHHH-HHH--------HTCCCEEEEECCSGGGCTTCTTT-CCSSHHHHHHHSTTCEEECCSSH
T ss_pred             EEEEEeh-HHHHHHHHHHHHH-HHh--------cCCCEEEEEECCccCcCCCCccc-CCHHHHHHHcCCCCCEEEeCCCH
Confidence            9999997 5567799999988 676        5799999874 45544 499999 54  4599999999999999999


Q ss_pred             HHHHHHHHHhHhC-CCcEEEEeCccccCcccCccccccCCCc-cccCCceEEeeeC--CcEEEEEechhHHHHHHHHHHH
Q 020510          185 EDARGLLKAAIRD-PDPVVFLENELLYGESFPVSAEVLDSSF-CLPIGKAKIEREG--KDVTITAFSKIVGLSLKAAEIL  260 (325)
Q Consensus       185 ~e~~~~l~~a~~~-~~Pv~ir~~~~l~~~~~p~~~~~~~~~~-~~~~gk~~vl~~G--~dv~Iia~G~~~~~a~~Aa~~L  260 (325)
                      +|++.++++|++. ++|+|||++|..    .   +.++.+.+ .+++| ++++++|  .|++||++|+++++|++|++.|
T Consensus       497 ~e~~~~l~~a~~~~~~Pv~i~~~r~~----~---~~~~~~~~~~~~~G-a~vl~~g~~~dv~lia~G~~v~~al~Aa~~L  568 (673)
T 1r9j_A          497 TETSGAWAVALSSIHTPTVLCLSRQN----T---EPQSGSSIEGVRHG-AYSVVDVPDLQLVIVASGSEVSLAVDAAKAL  568 (673)
T ss_dssp             HHHHHHHHHHHHCTTCCEEEECCSSE----E---CCCTTCCHHHHHTS-CEEEECCTTCSEEEEECGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCeEEEEEcCCC----C---CCCCCcccccccCC-CEEEeeCCCCCEEEEEechhHHHHHHHHHHH
Confidence            9999999999997 899999987652    2   22233333 46778 6788988  8999999999999999999999


Q ss_pred             HhcCCcEEEEEeeeccCCCHHH---HHHHHhCCCeEEEEecCCCCCCHHHHH
Q 020510          261 AKEGISAEVINLRSIRPLDRST---INASVRKTNRLVTVEEGFPQHGVGAEI  309 (325)
Q Consensus       261 ~~~Gi~~~Vi~~~~l~P~d~~~---l~~~~~~~~~vvvvEe~~~~GGlg~~v  309 (325)
                      +++ |+++|||++|++|||.+.   +.+++++++++||+||+.. +|+++.|
T Consensus       569 ~~~-i~~~Vv~~~sl~pld~~~~~~i~~~~~~~~~vv~vE~~~~-~g~~~~v  618 (673)
T 1r9j_A          569 SGE-LRVRVVSMPCQELFDAQPDTYRQAVLPAGVPVVSVEAYVS-FGWEKYS  618 (673)
T ss_dssp             TTT-CCEEEEECSCHHHHHTSCHHHHHHHSCTTSCEEEECSSCC-TTGGGTC
T ss_pred             Hhc-CCEEEEeCCCCchhhcccHHHHHHHhccCCeEEEEeCCCc-cchHHhc
Confidence            999 999999999999999986   8889999989999999987 8887754

>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*

Probab=100.00  E-value=6.3e-44  Score=374.88  Aligned_cols=274  Identities=19%  Similarity=0.212  Sum_probs=231.6

Q ss_pred             ccccHHHHHHHHHHHHHhcCCcEEEEecCCCC--------------ccCccccchhHHHHhCCCceeechhhHHHHHHHH
Q 020510           35 KQMMVREALNSALDEEMSADPKVFLMGEEVGE--------------YQGAYKISKGLLEKYGPERVLDTPITEAGFTGIG  100 (325)
Q Consensus        35 ~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~--------------~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A  100 (325)
                      +.++|..+++.+|.+++++|++|+++++|++.              .++.|..+.+|.++|||+||+|+||+|++++|+|
T Consensus       589 ~~~dw~~~e~~al~~l~~~~~~V~~~g~Dv~~gTfs~rh~v~~d~~~g~~~~~l~~l~~~~gp~rv~ds~IaE~~~vg~a  668 (933)
T 2jgd_A          589 KLFDWGGAENLAYATLVDEGIPVRLSGEDSGRGTFFHRHAVIHNQSNGSTYTPLQHIHNGQGAFRVWDSVLSEEAVLAFE  668 (933)
T ss_dssp             SCBCHHHHHHHHHHHHHTTTCCEEEEETTTTTCTTSCCCCSEECSSSSCEECGGGCSCTTCCCEEEECCCSCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEECCccCCcchhhhhhhcccccCCceeechHHHHHHcCCCeEEECCcCHHHHHHHH
Confidence            35788999999999999999999999999975              2345556688999999999999999999999999


Q ss_pred             HHHhccCCe--eEEecccccHHH---HHHHHHHHHH-hhccccCCCCccCCEEEEeCCCCCCCCCCCcch-HHHHHHh--
Q 020510          101 VGAAYYGLK--PVVEFMTFNFSM---QAIDHIINSA-AKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSH-CYAAWYA--  171 (325)
Q Consensus       101 ~GlA~~G~~--p~v~~~~~~f~~---ra~dqi~~~~-a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tHs~-~~~a~~~--  171 (325)
                      +|+|+.|++  |+++.++++|++   |++|||++++ +++      .++.||+++.++|. .+.|++||+ .+|.++.  
T Consensus       669 ~G~A~~G~~~lpv~e~qf~dF~~~AQra~DQii~~~~ak~------~~~~~vv~~l~~G~-~g~G~~Hss~~~E~~l~~~  741 (933)
T 2jgd_A          669 YGYATAEPRTLTIWEAQFGDFANGAQVVIDQFISSGEQKW------GRMCGLVMLLPHGY-EGQGPEHSSARLERYLQLC  741 (933)
T ss_dssp             HHHHHHCTTSEEEEEC-CGGGGGGGHHHHHHTTTTHHHHH------CCCCCCEEEEECCC-SSSCTTSSCCCHHHHHHTC
T ss_pred             HHHHhcCCCCCCEEEEEEhhhhcccHHHHHHHHHHHHHHH------ccCCCEEEEEeCCC-CCCCcccccchHHHHHHHh
Confidence            999999988  999877788887   9999999988 765      26889999988764 456888854 5888776  


Q ss_pred             cCCCcEEEeeCCHHHHHHHHHHhH-hC-CCcEEEEeCccccCcccCcc--ccccCCCccccCCceEEeeeCCcE--EEEE
Q 020510          172 SVPGLKVLSPYSSEDARGLLKAAI-RD-PDPVVFLENELLYGESFPVS--AEVLDSSFCLPIGKAKIEREGKDV--TITA  245 (325)
Q Consensus       172 ~iP~~~V~~P~d~~e~~~~l~~a~-~~-~~Pv~ir~~~~l~~~~~p~~--~~~~~~~~~~~~gk~~vl~~G~dv--~Iia  245 (325)
                      ++|||+|++|+|+.|++.+|++++ +. ++|++||+++.+++.+....  .+++++.|.+++|++++++ |+|+  +|++
T Consensus       742 ~~pnm~V~~Pst~~e~~~lLr~a~~~~~~~Pvii~~pk~l~r~~~~~~~~~~~~~~~f~~~ig~~~~~~-g~dV~~vI~~  820 (933)
T 2jgd_A          742 AEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELANGTFLPAIGEIDELD-PKGVKRVVMC  820 (933)
T ss_dssp             CTTCCEEECCCSHHHHHHHHHHHHHSSCCCCEEEEECSGGGGCTTCCBCHHHHHHCCCCSEECCCSCCC-GGGCCEEEEE
T ss_pred             CCCCeEEEecCCHHHHHHHHHHHHHhcCCCcEEEEecchhccCCCCcCCccccCCCceeecCCcceEee-cCcceEEEEE
Confidence            559999999999999999999985 64 89999999998876432211  1233355667889998877 8899  7777


Q ss_pred             echhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCC---eEEEEecCCCCCCHHHHHHHHHcCCCc
Q 020510          246 FSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN---RLVTVEEGFPQHGVGAEIWCAFFPPAW  318 (325)
Q Consensus       246 ~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~---~vvvvEe~~~~GGlg~~v~~~l~~~~~  318 (325)
                      +|.+...+++|++.|+++  +++|||+++|+|||.+.|.+++++++   +|||+||+...||+|+.|++.|.+.++
T Consensus       821 ~G~v~~~l~aa~~~l~~~--~v~VIdl~~l~Pld~e~i~~~~~k~~~~~~vv~veE~~~~gG~g~~v~~~l~~~~~  894 (933)
T 2jgd_A          821 SGKVYYDLLEQRRKNNQH--DVAIVRIEQLYPFPHKAMQEVLQQFAHVKDFVWCQEEPLNQGAWYCSQHHFREVIP  894 (933)
T ss_dssp             CTTHHHHHHHHHHHTTCC--SEEEEEECEEESCCHHHHHHHHGGGTTCCEEEEEEEEETTSTTHHHHHHHHHTTSC
T ss_pred             chHHHHHHHHHHHHcccC--CeEEEEeeccCCCCHHHHHHHHHhCCCCceEEEEecCCCcCCHHHHHHHHHHHhcc
Confidence            777777777777888765  99999999999999999999999998   899999999999999999999988765

>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*

Probab=100.00  E-value=1.5e-43  Score=369.99  Aligned_cols=265  Identities=18%  Similarity=0.216  Sum_probs=221.6

Q ss_pred             HHHHHH--HHHHhcCCcEEEEecCCCCc--------------cCccccchhH------HHHhCCCceeechhhHHHHHHH
Q 020510           42 ALNSAL--DEEMSADPKVFLMGEEVGEY--------------QGAYKISKGL------LEKYGPERVLDTPITEAGFTGI   99 (325)
Q Consensus        42 a~~~~L--~~l~~~d~~iv~l~~D~~~~--------------~g~~~~~~~~------~~~~gp~R~i~~GIaE~~~vg~   99 (325)
                      +++++|  .+++++|++|+++++|+++.              +|.|..+.+|      .++++|+||+|+||+|++++|+
T Consensus       520 a~~e~la~~~l~~~~~~V~~~G~Dv~~~Tfs~rh~v~~d~~~g~~~~~~~~l~~~~~~~~~~~p~Rv~ds~IsE~~~vG~  599 (868)
T 2yic_A          520 AFAELLALGSLIAEGKLVRLSGQDTQRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGF  599 (868)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEETTTTTCTTSCCCSSEECTTTCCEECGGGGGGBCTTSCBCSCEEEEEECCSCSHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCcCCccchhhcchhccccCCCceecchhhhcccccchhhcCCcEEEECCccHHHHHHH
Confidence            444443  36689999999999999874              6677778889      7766699999999999999999


Q ss_pred             HHHHhccC--CeeEEecccccHHHHH---HHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCcchH-HHHHH--h
Q 020510          100 GVGAAYYG--LKPVVEFMTFNFSMQA---IDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHC-YAAWY--A  171 (325)
Q Consensus       100 A~GlA~~G--~~p~v~~~~~~f~~ra---~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tHs~~-~~a~~--~  171 (325)
                      |+|+|+.|  .+|+++.++++|++++   +|||+++.. .+|    .+++||+++.+.|. .|+|++||++ +|+++  +
T Consensus       600 a~G~A~~G~~~~~i~eaqf~dF~~~AQ~~~DQ~i~~~~-~k~----~~~~~vvi~~p~G~-~G~Gp~Hs~~~~E~~l~l~  673 (868)
T 2yic_A          600 EYGYSVGNPDAMVLWEAQFGDFVNGAQSIIDEFISSGE-AKW----GQLSDVVLLLPHGH-EGQGPDHTSGRIERFLQLW  673 (868)
T ss_dssp             HHHHHHHCTTSEEEEECSSGGGGGGGHHHHHHTTTTHH-HHH----CCCCCCEEEEECCC-SSSCTTSSCCCHHHHHHHC
T ss_pred             HHHHHccCCCCceEEEEehHHHHhhHHHHHHHHHHHHH-HHh----CCCCCEEEEecCCC-CCCChhhcCCcHHHHHhcC
Confidence            99999999  5678888889999888   999998763 223    25889999988765 4699999875 88766  9


Q ss_pred             cCCCcEEEeeCCHHHHHHHHHHhHhCC--CcEEEEeCccccCcccCccc--cccCCCccccCCceEE---eeeCCcE--E
Q 020510          172 SVPGLKVLSPYSSEDARGLLKAAIRDP--DPVVFLENELLYGESFPVSA--EVLDSSFCLPIGKAKI---EREGKDV--T  242 (325)
Q Consensus       172 ~iP~~~V~~P~d~~e~~~~l~~a~~~~--~Pv~ir~~~~l~~~~~p~~~--~~~~~~~~~~~gk~~v---l~~G~dv--~  242 (325)
                      ++|||+|++|+|+.|++.+|+.++..+  +|+||+++|.+|+.+.+..+  +..++.|..++|++++   +++|+|+  +
T Consensus       674 ~~pnm~V~~Ps~p~~~~~lLr~a~~~~~~~Pvii~~pk~llR~~~~~~~~~~~~~~~f~~~ig~~~~~~~l~~g~dv~r~  753 (868)
T 2yic_A          674 AEGSMTIAMPSTPANYFHLLRRHGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTESKFRSVLEEPMYTDGEGDRNKVTRL  753 (868)
T ss_dssp             CTTSCEEECCCSHHHHHHHHHHHHHSSCCCCEEEEECSGGGGCTTSCBCHHHHHSCCCCSEECCHHHHTSSCCGGGCCEE
T ss_pred             CCCCCEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEechHHhCCCCCCCCccccCCCCceecCCcceeecccccCCceeEE
Confidence            999999999999999999999988754  99999999998875432211  1112234447899887   7899999  9


Q ss_pred             EEEechhHHHHHHHHHHHHhcC-CcEEEEEeeeccCCCHHHHHHHHhCCCe---EEEEecCCCCCCHHHHHHHHHcC
Q 020510          243 ITAFSKIVGLSLKAAEILAKEG-ISAEVINLRSIRPLDRSTINASVRKTNR---LVTVEEGFPQHGVGAEIWCAFFP  315 (325)
Q Consensus       243 Iia~G~~~~~a~~Aa~~L~~~G-i~~~Vi~~~~l~P~d~~~l~~~~~~~~~---vvvvEe~~~~GGlg~~v~~~l~~  315 (325)
                      ||++|.+ ..++++++  +++| ++++|||+++|+|||.++|.++++++++   |||+||+..+||+|+.|++.|.+
T Consensus       754 Ii~~G~~-~~~l~aa~--~~~g~i~v~VIdl~~l~Pld~~~i~~~~~k~~~~~~vv~veE~~~~gG~g~~v~~~l~e  827 (868)
T 2yic_A          754 LLTSGKI-YYELAARK--AKENREDVAIVRIEQLAPLPRRRLAETLDRYPNVKEKFWVQEEPANQGAWPSFGLTLPE  827 (868)
T ss_dssp             EEECSTH-HHHHHHHH--HHHTCTTEEEEEECEEESCCHHHHHHHHHTCTTCCEEEEEEEEETTSTTHHHHHHHHHH
T ss_pred             EEEecHH-HHHHHHHH--HhCCCCCEEEEEeeecCCCCHHHHHHHHHhcCCCceEEEEEeCCCCCCcHHHHHHHHHH
Confidence            9999999 66776666  5678 9999999999999999999999999987   89999999999999999999976

>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}

Probab=100.00  E-value=4.6e-42  Score=366.72  Aligned_cols=259  Identities=18%  Similarity=0.211  Sum_probs=219.8

Q ss_pred             HHHHhcCCcEEEEecCCCCc--------------cCccccchhH------HHHhCCCceeechhhHHHHHHHHHHHhccC
Q 020510           48 DEEMSADPKVFLMGEEVGEY--------------QGAYKISKGL------LEKYGPERVLDTPITEAGFTGIGVGAAYYG  107 (325)
Q Consensus        48 ~~l~~~d~~iv~l~~D~~~~--------------~g~~~~~~~~------~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G  107 (325)
                      .+++++|++|+++++|+++.              +|.|..+.+|      .++++|+||+|+||+|++++|+|+|+|+.|
T Consensus       773 ~~ll~~~~~V~l~GeDv~rgtfs~rh~v~~d~~~g~~~~~l~~l~~~~~~~~~~~p~rv~ds~IsE~~~vg~a~G~A~~G  852 (1113)
T 2xt6_A          773 GSLIAEGKLVRLSGQDTQRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGFEYGYSVGN  852 (1113)
T ss_dssp             HHHHHTTCEEEEEETTTTTCTTSCCCSSEECTTTCCEECGGGGGGBCTTSCBCSCEEEEEECCSCSHHHHHHHHHHHHHC
T ss_pred             HHHHhcCCCEEEEcccCCCccchhcchheecccCCceecchhccccccccchhcCCcEEEECCCCHHHHHHHHHHHHhcC
Confidence            34599999999999999863              4567777889      776779999999999999999999999999


Q ss_pred             --CeeEEecccccHHHHH---HHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCcchH-HHHHH--hcCCCcEEE
Q 020510          108 --LKPVVEFMTFNFSMQA---IDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHC-YAAWY--ASVPGLKVL  179 (325)
Q Consensus       108 --~~p~v~~~~~~f~~ra---~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tHs~~-~~a~~--~~iP~~~V~  179 (325)
                        .+|+++.++++|++++   +|||++++. .+|    .+++||+++.++|. .|+|++||++ +|+++  +++|||+|+
T Consensus       853 ~~~~~i~Eaqf~dF~~~aQ~~~DQ~i~~~~-~k~----~~~~~vv~~lp~G~-~G~G~~Hs~~~~E~~l~l~~~pnm~V~  926 (1113)
T 2xt6_A          853 PDAMVLWEAQFGDFVNGAQSIIDEFISSGE-AKW----GQLSDVVLLLPHGH-EGQGPDHTSGRIERFLQLWAEGSMTIA  926 (1113)
T ss_dssp             TTSEEEEECSSGGGGGGGHHHHHHTTTTHH-HHH----CCCCCCEEEEECCC-SSSCTTSSCCCHHHHHHHCCTTSCEEE
T ss_pred             CCCceEEEEEEHHHHhhhHHHHHHHHHHHH-HHh----CCCCCEEEEeCCCC-CCCChhhhcccHHHHHhcCCCCCcEEE
Confidence              6778898889999887   999998863 223    25899999998766 5699999885 88777  999999999


Q ss_pred             eeCCHHHHHHHHHHhHhCC--CcEEEEeCccccCcccCccc--cccCCCccccCCceEE---eeeCCcE--EEEEechhH
Q 020510          180 SPYSSEDARGLLKAAIRDP--DPVVFLENELLYGESFPVSA--EVLDSSFCLPIGKAKI---EREGKDV--TITAFSKIV  250 (325)
Q Consensus       180 ~P~d~~e~~~~l~~a~~~~--~Pv~ir~~~~l~~~~~p~~~--~~~~~~~~~~~gk~~v---l~~G~dv--~Iia~G~~~  250 (325)
                      +|+|+.|++.+|+.++..+  +|+||+++|.+|+.+.+...  +..++.+..++|++++   +++|+|+  +||++|.+ 
T Consensus       927 ~Ps~~~~~~~lLr~a~~~~~~~Pvii~~pk~L~R~~~~~~~~~~~~~~~f~~~ig~~~~~~~l~~g~dv~r~iv~~G~~- 1005 (1113)
T 2xt6_A          927 MPSTPANYFHLLRRHGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTESKFRSVLEEPMYTDGEGDRNKVTRLLLTSGKI- 1005 (1113)
T ss_dssp             CCSSHHHHHHHHHHHHHSSCCCCEEEEECSGGGSCSSSCBCHHHHHSCCCCSEECCHHHHTSCCCSTTCCEEEEECSTH-
T ss_pred             ecCCHHHHHHHHHHHHhccCCCCEEEEechHHhCCCCCCCcccccCCCCccccCCcceeeccccCccccCEEEEEECHH-
Confidence            9999999999999988754  89999999998876432211  1112234447899887   7899999  99999998 


Q ss_pred             HHHHHHHHHHHhcC-CcEEEEEeeeccCCCHHHHHHHHhCCCe---EEEEecCCCCCCHHHHHHHHHcC
Q 020510          251 GLSLKAAEILAKEG-ISAEVINLRSIRPLDRSTINASVRKTNR---LVTVEEGFPQHGVGAEIWCAFFP  315 (325)
Q Consensus       251 ~~a~~Aa~~L~~~G-i~~~Vi~~~~l~P~d~~~l~~~~~~~~~---vvvvEe~~~~GGlg~~v~~~l~~  315 (325)
                      ..++++++  +++| ++++|||+++|+|||.++|.++++++++   |||+||+..+||+|+.|++.|.+
T Consensus      1006 ~~~l~aa~--~~~g~i~v~VIdl~~l~Pld~~~i~~~~~k~~~~~~vv~veE~~~~gG~gs~v~~~l~e 1072 (1113)
T 2xt6_A         1006 YYELAARK--AKENREDVAIVRIEQLAPLPRRRLAETLDRYPNVKEKFWVQEEPANQGAWPSFGLTLPE 1072 (1113)
T ss_dssp             HHHHHHHH--HHHTCTTEEEEEESEEESCCHHHHHHHHTTCTTCCEEEEEEEEETTSTTHHHHHHHHHH
T ss_pred             HHHHHHHH--HhCCCCCEEEEEeeeecCCCHHHHHHHHHhCCCCceEEEEecCCCCCCcHHHHHHHHHH
Confidence            77777766  5678 9999999999999999999999999988   99999999999999999999976

>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*

Probab=100.00  E-value=1.2e-38  Score=333.73  Aligned_cols=265  Identities=15%  Similarity=0.169  Sum_probs=208.3

Q ss_pred             cccccHHHHHHHHHHHHHhcC---CcEEEEecCCCC-c--------cCccc-cchhHH-----------HHhCCCceeec
Q 020510           34 VKQMMVREALNSALDEEMSAD---PKVFLMGEEVGE-Y--------QGAYK-ISKGLL-----------EKYGPERVLDT   89 (325)
Q Consensus        34 ~~~~s~~~a~~~~L~~l~~~d---~~iv~l~~D~~~-~--------~g~~~-~~~~~~-----------~~~gp~R~i~~   89 (325)
                      ++++++|++|+++|.++++++   ++||++++|++. .        .+++. ....|.           +.| |+||||+
T Consensus       489 ~~~~atr~afg~~L~~l~~~~~~~~~iV~i~pd~~~~~G~~dl~~S~~i~~~~~~~f~~~d~~~~~~~~e~~-~~R~~d~  567 (886)
T 2qtc_A          489 SKEISTTIAFVRALNVMLKNKSIKDRLVPIIADEARTFGMEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDE-KGQILQE  567 (886)
T ss_dssp             SSCBCHHHHHHHHHHHHTTCTTTTTTEEEEESSCSGGGTCHHHHHHHCBBCC-----------------CBT-TCCBEEC
T ss_pred             CCcchHHHHHHHHHHHHHhhcccCCcEEEEcCccccccCcccccccccccccCCcccccccchhhhhhhhcC-CCceeee
Confidence            367899999999999999998   999999999763 1        11110 012342           577 9999999


Q ss_pred             hhhHHHH-H---HHHHHHhccC--CeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCC-C-CCCCCCC
Q 020510           90 PITEAGF-T---GIGVGAAYYG--LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNG-A-AAGVGAQ  161 (325)
Q Consensus        90 GIaE~~~-v---g~A~GlA~~G--~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G-~-~~g~G~t  161 (325)
                      ||+|++| +   ++|+|+|+.|  ++||+.+++.|.++|++|||++++++        ++.++++.+..+ . .+++|+|
T Consensus       568 GIaE~~a~~~~~g~a~GlA~~G~~~~P~~~~ys~F~~qRa~Dqi~~~~d~--------~~~~v~l~~~~~~~~~g~dG~t  639 (886)
T 2qtc_A          568 GINELGAGCSWLAAATSYSTNNLPMIPFYIYYSMFGFQRIGDLCWAAGDQ--------QARGFLIGGTSGRTTLNGEGLQ  639 (886)
T ss_dssp             CSCHHHHHHHHHHHHTHHHHTSCCCEEEEEEEGGGSHHHHHHHHHHHHHT--------TCCCEEEEESCSTTTSTTTCTT
T ss_pred             ccCchhhhhHHHHHHHHHHhcCCCceEEEEEehHHHHHHHHHHHHHHHHH--------hcCCEEEEEecCcccCCCCCCc
Confidence            9999995 5   6999999999  89998777444499999999999986        577888876543 3 3569999


Q ss_pred             cch-HHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhC-CCc----EEEEeCccccCcccCccccccCCC-ccccCCceEE
Q 020510          162 HSH-CYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-PDP----VVFLENELLYGESFPVSAEVLDSS-FCLPIGKAKI  234 (325)
Q Consensus       162 Hs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-~~P----v~ir~~~~l~~~~~p~~~~~~~~~-~~~~~gk~~v  234 (325)
                      |++ .++++++++|||+|+.|+|+.|++.+++++++. ++|    +++|.++..  .++.. +.++++. +.+ +|++++
T Consensus       640 Hq~~~~~a~lr~iPnl~V~~Pada~E~~~~l~~al~~~~gP~~e~v~i~~~r~~--~~~~~-p~~~~~~~~~~-~gga~v  715 (886)
T 2qtc_A          640 HEDGHSHIQSLTIPNCISYDPAYAYEVAVIMHDGLERMYGEKQENVYYYITTLN--ENYHM-PAMPEGAEEGI-RKGIYK  715 (886)
T ss_dssp             TCCSCHHHHHTTSTTEEEECCSSHHHHHHHHHHHHHHHHSTTCCCCEEEEECCS--CCBCC-CCCCTTCHHHH-HHTCEE
T ss_pred             cCCcchHHHHhhCCCCEEEecCCHHHHHHHHHHHHHhcCCCCCceEEEEEeCCc--cccCC-CCCCcchhhhc-cCceEE
Confidence            965 677999999999999999999999999999996 679    999987642  01100 2223222 234 788999


Q ss_pred             eeeC----CcEEEEEechhHHHHHHHHHHHHhc-CCcEEEEEeeeccCCCHHH-------------------HHHHHhCC
Q 020510          235 EREG----KDVTITAFSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRST-------------------INASVRKT  290 (325)
Q Consensus       235 l~~G----~dv~Iia~G~~~~~a~~Aa~~L~~~-Gi~~~Vi~~~~l~P~d~~~-------------------l~~~~~~~  290 (325)
                      +++|    .|++||++|+++++|++|++.|+++ ||+++|||++|++|||.++                   +.+.+.. 
T Consensus       716 lr~g~~~~~dVtLia~G~~v~~al~AAe~L~~e~GI~a~Vvd~~sl~pLD~e~i~~~kt~rl~p~~~~~~~~~e~~l~~-  794 (886)
T 2qtc_A          716 LETIEGSKGKVQLLGSGSILRHVREAAEILAKDYGVGSDVYSVTSFTELARDGQDCERWNMLHPLETPRVPYIAQVMND-  794 (886)
T ss_dssp             EEEECCSSEEEEEEECGGGHHHHHHHHHHHHHHHCEEEEEEECSCHHHHHHHHHHHHHHHHHCTTSCCCCCHHHHHCCS-
T ss_pred             EEecCCCCCCEEEEeCcHHHHHHHHHHHHHhhhhCCceEEEECCcCcccchHHHHHhhhcccCccccccHHHHHHhcCC-
Confidence            9987    7999999999999999999999999 9999999999999999986                   3444444 


Q ss_pred             CeEEEEecCCCCCCHHHHHHHHHc
Q 020510          291 NRLVTVEEGFPQHGVGAEIWCAFF  314 (325)
Q Consensus       291 ~~vvvvEe~~~~GGlg~~v~~~l~  314 (325)
                      +.+|++|++..  |+++.+.+++.
T Consensus       795 ~~vVa~ed~~~--g~~~~~~~~~~  816 (886)
T 2qtc_A          795 APAVASTDYMK--LFAEQVRTYVP  816 (886)
T ss_dssp             SCEEEECSSCT--HHHHTTGGGCC
T ss_pred             CCEEEEEeccc--chHHHHHHHcC
Confidence            56788888765  68777766654

>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*

Probab=100.00  E-value=5.2e-36  Score=309.39  Aligned_cols=264  Identities=10%  Similarity=0.096  Sum_probs=207.0

Q ss_pred             cccHHHHHHHHHHHHHhcCCc-EEEEecCCCCccCccccchhHHHH---------hC-C--------CceeechhhHHHH
Q 020510           36 QMMVREALNSALDEEMSADPK-VFLMGEEVGEYQGAYKISKGLLEK---------YG-P--------ERVLDTPITEAGF   96 (325)
Q Consensus        36 ~~s~~~a~~~~L~~l~~~d~~-iv~l~~D~~~~~g~~~~~~~~~~~---------~g-p--------~R~i~~GIaE~~~   96 (325)
                      +...+.+++++|.++++++++ ++++++|+..|+.+    ..|.+.         +. |        +|||+ ||+|++|
T Consensus       428 ~~~atra~g~~L~~l~~~~p~~~vv~sADl~~Sn~t----~~f~~~t~~~~~~~~~~~P~d~~~~~~GR~i~-GI~Eh~M  502 (845)
T 3ahc_A          428 QVEAPRALGAYCRDIIKNNPDSFRIFGPDETASNRL----NATYEVTDKQWDNGYLSGLVDEHMAVTGQVTE-QLSEHQC  502 (845)
T ss_dssp             EECTHHHHHHHHHHHHHHSTTTEEEEESSCTTTTTC----GGGGGTCCEECCSCCCCTTTCCSEESSCSEEE-CSCHHHH
T ss_pred             chhHHHHHHHHHHHHHHhCCCcEEEEecCCCccccH----HHHHhhcccccccccccCCcccccCCCCcEee-eecHHHH
Confidence            455678889999999999999 99999999877655    333333         31 4        89999 9999999


Q ss_pred             HHHHHHHhccCCeeEEecccccHH--HHHHHH----HHHHHhhccccCCCCccC-CEEEEeC-CCCC-CCCCCCcchH--
Q 020510           97 TGIGVGAAYYGLKPVVEFMTFNFS--MQAIDH----IINSAAKSNYMSSGQISV-PIVFRGP-NGAA-AGVGAQHSHC--  165 (325)
Q Consensus        97 vg~A~GlA~~G~~p~v~~~~~~f~--~ra~dq----i~~~~a~~~~~~~~~~~~-pvv~~~~-~G~~-~g~G~tHs~~--  165 (325)
                      ++++.|+|+.|.+||+.++++|+.  .|+++|    ||++++.+.|+.    +. ++.++.. +|.. +.+|+|| |+  
T Consensus       503 ~gia~Glal~G~~~f~~t~atFl~~~~~a~~q~akwiR~a~a~~~wr~----~~~~v~~v~Th~si~~GeDGpTH-Q~~e  577 (845)
T 3ahc_A          503 EGFLEAYLLTGRHGIWSSYESFVHVIDSMLNQHAKWLEATVREIPWRK----PISSVNLLVSSHVWRQDHNGFSH-QDPG  577 (845)
T ss_dssp             HHHHHHHHHTTCEEEEEEEHHHHGGGHHHHHHHHHHHHHHHHHCTTSC----CCBCEEEEEESCGGGCTTTCGGG-CCCT
T ss_pred             HHHHHHHHhcCCCCceecchhhhchhhhHHHHHHHHHHhhHHhhhhcc----cCCceEEEEeCCceeecCCCCCC-CCcH
Confidence            999999999999999999877654  899999    999855543432    33 4555544 4655 4599999 65  


Q ss_pred             HHH--HHh---cCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEEe-CccccCcccCccccccCCCc---cccCCceEEe-
Q 020510          166 YAA--WYA---SVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE-NELLYGESFPVSAEVLDSSF---CLPIGKAKIE-  235 (325)
Q Consensus       166 ~~a--~~~---~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir~-~~~l~~~~~p~~~~~~~~~~---~~~~gk~~vl-  235 (325)
                      ++.  .++   .+|||+|+.|+|..|+..+++.+++.++|++++. +|.    +.   +.+++.++   .+..|++.+. 
T Consensus       578 ~~d~l~~~r~~~iPn~~V~~PaDanet~~a~~~al~~~~~~~v~v~sRq----~~---p~~~~~~~a~~~~~~G~~v~~~  650 (845)
T 3ahc_A          578 VTSLLINKTFNNDHVTNIYFATDANMLLAISEKCFKSTNKINAIFAGKQ----PA---PTWVTLDEARAELEAGAAEWKW  650 (845)
T ss_dssp             HHHHHGGGCCTTCCCEEEEECCSHHHHHHHHHHHHHCBSCEEEEECCCS----CE---EECSCHHHHHHHHHHSEEECTT
T ss_pred             HHHHHHHhhccCCCCeEEEeCCCHHHHHHHHHHHHHcCCCeEEEEecCC----CC---CccCCchhhhhhhcCCeEEEEe
Confidence            443  333   7899999999999999999999999988888875 443    22   23333332   3567777776 


Q ss_pred             --ee--C--CcEEEEEechh-HHHHHHHHHHHHhcCCcEEEEEeeec---cCCCHHHHHHHHhCCCeEEEEecCCC--CC
Q 020510          236 --RE--G--KDVTITAFSKI-VGLSLKAAEILAKEGISAEVINLRSI---RPLDRSTINASVRKTNRLVTVEEGFP--QH  303 (325)
Q Consensus       236 --~~--G--~dv~Iia~G~~-~~~a~~Aa~~L~~~Gi~~~Vi~~~~l---~P~d~~~l~~~~~~~~~vvvvEe~~~--~G  303 (325)
                        ++  |  .|++||++|+. +.+|++|++.|+++||+++|||+.+|   +|.+++.+....+.++.|+|+|+|.+  .|
T Consensus       651 as~d~~g~~~DVvLiAtGsev~~EAL~AA~~L~~~GI~vRVVsm~~lf~lqp~~~~~~~ls~~~~~~l~T~e~h~i~~~g  730 (845)
T 3ahc_A          651 ASNAENNDEVQVVLASAGDVPTQELMAASDALNKMGIKFKVVNVVDLLKLQSRENNDEALTDEEFTELFTADKPVLFAYH  730 (845)
T ss_dssp             TCCCSSTTTCSEEEEEESHHHHHHHHHHHHHHHHTTCCEEEEEECBGGGGSCTTTCTTSCCHHHHHHHHCSSSCEEEEES
T ss_pred             ecccccCCCCCEEEEEeccHHHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccCHHHhCcEeecCCcceeeec
Confidence              45  5  89999999965 56699999999999999999999999   67765544434556678999999987  69


Q ss_pred             CHHHHHHHHHcCC
Q 020510          304 GVGAEIWCAFFPP  316 (325)
Q Consensus       304 Glg~~v~~~l~~~  316 (325)
                      |+++.|++.+.++
T Consensus       731 GlgsaV~ell~~r  743 (845)
T 3ahc_A          731 SYAQDVRGLIYDR  743 (845)
T ss_dssp             SCHHHHHHHTTTS
T ss_pred             CcHHHHHHHHHhC
Confidence            9999999999987

>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}

Probab=99.95  E-value=8.1e-28  Score=232.99  Aligned_cols=260  Identities=18%  Similarity=0.158  Sum_probs=103.5

Q ss_pred             ccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHH---HhCCCceeechhhHHHHHHHHHHHhccCCeeE
Q 020510           35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLE---KYGPERVLDTPITEAGFTGIGVGAAYYGLKPV  111 (325)
Q Consensus        35 ~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~---~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~  111 (325)
                      ..++-.+|+++++..   .+.+++..-+-. .++..   .+.|.+   ++ ..+|+++. +|++++++|.|+|+.|.||+
T Consensus        21 ~~~~GneAva~~~~~---ag~~~v~~yPgt-P~t~i---~~~l~~~~~~~-g~~~i~~e-~E~~a~~~a~Gaa~aG~r~~   91 (395)
T 1yd7_A           21 DFIQGDEAIARAAIL---AGCRFYAGYPIT-PASEI---FEAMALYMPLV-DGVVIQME-DEIASIAAAIGASWAGAKAM   91 (395)
T ss_dssp             EEEEHHHHHHHHHHH---HTCCEEEECCBT-TTBCH---HHHHHHHGGGG-TCEEEECS-CHHHHHHHHHHHHHTTCCEE
T ss_pred             EEeEHHHHHHHHHHH---cCCCEEEEEECc-chHHH---HHHHHHhhhhc-CcEEEEeC-CHHHHHHHHHHHHHhCCcEE
Confidence            456788999888765   466777766522 22222   244544   56 36899986 99999999999999999999


Q ss_pred             EecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCC----CCCCcchHHHHHHhcCC--CcEEEeeCCHH
Q 020510          112 VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAG----VGAQHSHCYAAWYASVP--GLKVLSPYSSE  185 (325)
Q Consensus       112 v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g----~G~tHs~~~~a~~~~iP--~~~V~~P~d~~  185 (325)
                      ++++++ ++.+++|||.+. +        ..++|+|++...+...+    ....|++...+++.+.|  ++.++.|++++
T Consensus        92 ~~ts~~-G~~~~~d~l~~a-a--------~~~~P~Vi~~~~~~~~~~g~~~~~~~sd~~~~~~~~~g~~g~~vl~p~~~q  161 (395)
T 1yd7_A           92 TATSGP-GFSLMQENIGYA-V--------MTETPVVIVDVQRSGPSTGQPTLPAQGDIMQAIWGTHGDHSLIVLSPSTVQ  161 (395)
T ss_dssp             EEEETT-HHHHHTTTCC-------------CCCCEEEEEEC--------------------------CCCCEEECCCSHH
T ss_pred             EEeCch-HHHHHHHHHHHH-H--------hcCCCEEEEEeeCCCCCCCCCcccchhHHHHHHhccCCCcceEEEeCCCHH
Confidence            999855 456699999763 3        26899999876533322    22234444457778866  99999999999


Q ss_pred             HHHHHHHHhH----hCCCcEEEEeCccccCcc----cCcccccc----------C---CCccc--cC--------Cc---
Q 020510          186 DARGLLKAAI----RDPDPVVFLENELLYGES----FPVSAEVL----------D---SSFCL--PI--------GK---  231 (325)
Q Consensus       186 e~~~~l~~a~----~~~~Pv~ir~~~~l~~~~----~p~~~~~~----------~---~~~~~--~~--------gk---  231 (325)
                      |+++++.+|+    +.+.||+++++..++...    .+...++.          .   .+|..  +.        |.   
T Consensus       162 ea~~l~~~A~~lA~~~~~PVi~~~~~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~  241 (395)
T 1yd7_A          162 EAFDFTIRAFNLSEKYRTPVILLTDAEVGHMRERVYIPNPDEIEIINRKLPRNEEEAKLPFGDPHGDGVPPMPIFGKGYR  241 (395)
T ss_dssp             HHHHHHHHHHHHHHHHTSEEEEEECHHHHHCEEEEEECCGGGSCCCCCC-------------------------------
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEcchhHhCeeceecCCChHHhhhhcccccCCCcccccCcccCCCCCCCCCccCCCCce
Confidence            9999999999    457899999875432110    00000000          0   00111  00        00   


Q ss_pred             ------------------------------------------e-EEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEE
Q 020510          232 ------------------------------------------A-KIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAE  268 (325)
Q Consensus       232 ------------------------------------------~-~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~  268 (325)
                                                                . .+.++|.|++||++|+++..+++|++.|+++|++++
T Consensus       242 ~~~~~~~h~e~g~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~g~dv~iva~G~~~~~~~eA~~~L~~~Gi~v~  321 (395)
T 1yd7_A          242 TYVTGLTHDEKGRPRTVDREVHERLIKRIVEKIEKNKKDIFTYETYELEDAEIGVVATGIVARSALRAVKMLREEGIKAG  321 (395)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eEecccccccccCcccCCHHHHHHHHHHHHHHHHHHHhhcCccEEecCCCCCEEEEEECccHHHHHHHHHHHHHcCCceE
Confidence                                                      0 112457899999999999999999999999999999


Q ss_pred             EEEeeeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcC
Q 020510          269 VINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFP  315 (325)
Q Consensus       269 Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~  315 (325)
                      ||++++++|||.+.|.++++++++|+|+||+.  ||++++|++.+.+
T Consensus       322 vi~~r~~~Pld~~~i~~~~~~~~~vvvvEe~~--G~l~~~v~~~~~~  366 (395)
T 1yd7_A          322 LLKIETIWPFDFELIERIAERVDKLYVPEMNL--GQLYHLIKEGANG  366 (395)
T ss_dssp             -----------------------------------------------
T ss_pred             EEEeCeecCCCHHHHHHHHhcCCEEEEEeCCc--hHHHHHHHHHhcC
Confidence            99999999999999999999999999999997  9999999998865

>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*

Probab=99.83  E-value=2.9e-19  Score=193.30  Aligned_cols=261  Identities=15%  Similarity=0.101  Sum_probs=179.3

Q ss_pred             cccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHH-----HhCCCceeechhhHHHHHHHHHHHhccCCee
Q 020510           36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLE-----KYGPERVLDTPITEAGFTGIGVGAAYYGLKP  110 (325)
Q Consensus        36 ~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~-----~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p  110 (325)
                      -++-.+|++...    ....+++..-+ ...++...-....+.+     .||..+.+...++|.++++++.|+|.+|.|+
T Consensus         6 ~~~GNeAvA~~a----~ag~~~~~~YP-ITPstei~e~l~~~~~~g~~~~~G~~~~v~~~esE~aA~~aaiGAa~aGaR~   80 (1231)
T 2c42_A            6 TTDGNTATAHVA----YAMSEVAAIYP-ITPSSTMGEEADDWAAQGRKNIFGQTLTIREMQSEAGAAGAVHGALAAGALT   80 (1231)
T ss_dssp             EEEHHHHHHHHH----HHHCSEEEECC-CTTTHHHHHHHHHHHHHTCCCTTSCCCEEEECSSHHHHHHHHHHHHHTTCCE
T ss_pred             EccHHHHHHHHH----HHCCCEEEEEC-CCCchHHHHHHHHHHHcCCchhcCCceEEEecCChHHHHHHHHHHHHcCChH
Confidence            456677877764    23467777655 2233322111111222     3666689999999999999999999999999


Q ss_pred             EEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC--CCCCC--CCCCcchHHHHHHhcCCCcEEEeeCCHHH
Q 020510          111 VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN--GAAAG--VGAQHSHCYAAWYASVPGLKVLSPYSSED  186 (325)
Q Consensus       111 ~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~--G~~~g--~G~tHs~~~~a~~~~iP~~~V~~P~d~~e  186 (325)
                      +++|. +..+..+.|.|.. ++.        ..+|+|++.+.  |++.+  ....|+   +.++...+|+.|++|+|++|
T Consensus        81 ~t~Ts-~~Gl~lm~e~l~~-~ag--------~~~P~Vi~va~R~g~~~glsi~~~hs---d~~~ar~~G~~vl~pss~QE  147 (1231)
T 2c42_A           81 TTFTA-SQGLLLMIPNMYK-ISG--------ELLPGVFHVTARAIAAHALSIFGDHQ---DIYAARQTGFAMLASSSVQE  147 (1231)
T ss_dssp             EEEEC-HHHHHHHHHHHHH-HHH--------TTCCCEEEEEECCCCSSSBCCSCCSH---HHHTTTTSSCEEEECCSHHH
T ss_pred             hhhcc-HHHHHHHHHHHHH-HhC--------CCCCEEEEECCCCccCCCCcCCCchh---hHHHHhcCCcEEEECCCHHH
Confidence            99987 5556667788754 332        36899988764  33322  334553   24567889999999999999


Q ss_pred             HHHHHHHhHh----CCCcEEEEeCccccCc---c--cCcccc---c-------------cCCCccccCCc----------
Q 020510          187 ARGLLKAAIR----DPDPVVFLENELLYGE---S--FPVSAE---V-------------LDSSFCLPIGK----------  231 (325)
Q Consensus       187 ~~~~l~~a~~----~~~Pv~ir~~~~l~~~---~--~p~~~~---~-------------~~~~~~~~~gk----------  231 (325)
                      +++++..|++    .+.||+++.+..++..   +  .|...+   +             .+.+.....|.          
T Consensus       148 a~dl~~~Af~lAek~~~PVi~~~Dg~~~sh~~~~vev~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~g~a~~~~~~~~~  227 (1231)
T 2c42_A          148 AHDMALVAHLAAIESNVPFMHFFDGFRTSHEIQKIEVLDYADMASLVNQKALAEFRAKSMNPEHPHVRGTAQNPDIYFQG  227 (1231)
T ss_dssp             HHHHHHHHHHHHHHHCCCEEEEEETTTTTTCEEEEECCCHHHHHHTSCHHHHHHHHHHSCCTTSCCEESCBCCTTTHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEecCcccccceeeeecCCHHHHHhhcChhhhhhccccccCCCCceecCCCcCcchhhhh
Confidence            9999998854    6889999987643321   0  000000   0             00000011111          


Q ss_pred             --------------------------------eEE-eeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCC
Q 020510          232 --------------------------------AKI-EREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPL  278 (325)
Q Consensus       232 --------------------------------~~v-l~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~  278 (325)
                                                      .+. -.++.|++||++|+++..+++|++.|+++|++++||++++++||
T Consensus       228 ~e~~~~~~~~~~~~v~~~~~k~~~~~g~~y~~~e~~g~~dAd~vIVa~Gs~~~~~~eAv~~L~~~G~kvgvl~lr~~rPf  307 (1231)
T 2c42_A          228 REAANPYYLKVPGIVAEYMQKVASLTGRSYKLFDYVGAPDAERVIVSMGSSCETIEEVINHLAAKGEKIGLIKVRLYRPF  307 (1231)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHHHHHHHSCCCCSEEEEECTTCSEEEEECSTHHHHHHHHHHHHHTTTCCEEEEEESEEESC
T ss_pred             HhhhhhhhHhhHHHHHHHHHHHHHHhcccccceeeecCCCCCEEEEEeCHHHHHHHHHHHHHHhcCCceEEEEEEEeCCC
Confidence                                            121 14578999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHH-hCCCeEEEEecCCCCC----CHHHHHHHHHc
Q 020510          279 DRSTINASV-RKTNRLVTVEEGFPQH----GVGAEIWCAFF  314 (325)
Q Consensus       279 d~~~l~~~~-~~~~~vvvvEe~~~~G----Glg~~v~~~l~  314 (325)
                      |.+.|.+++ ++.++|+|+|+....|    -+..+|...+.
T Consensus       308 p~~~i~~~l~~~~k~i~VvE~~~~~g~~G~pl~~dv~~al~  348 (1231)
T 2c42_A          308 VSEAFFAALPASAKVITVLDRTKEPGAPGDPLYLDVCSAFV  348 (1231)
T ss_dssp             CHHHHHHTSCTTCCEEEEEESSCCTTCSSCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhcCCEEEEEECCCCCCCCcccHHHHHHHHHh
Confidence            999999988 6679999999984332    25556666664

>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}

Probab=99.63  E-value=7.1e-16  Score=124.62  Aligned_cols=78  Identities=22%  Similarity=0.299  Sum_probs=73.1

Q ss_pred             eeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHc
Q 020510          236 REGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFF  314 (325)
Q Consensus       236 ~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~  314 (325)
                      .+|.|++||++|+++..+++|++.|+++|++++|+++++++|||.+.|.++++++++|+|+||+. .|||+++|...+.
T Consensus        11 ~~g~dv~iv~~Gs~~~~a~eA~~~L~~~Gi~v~vi~~r~~~P~d~~~l~~~~~~~~~vvvvE~~~-~G~l~~~i~~~~~   88 (118)
T 3ju3_A           11 EKEADITFVTWGSQKGPILDVIEDLKEEGISANLLYLKMFSPFPTEFVKNVLSSANLVIDVESNY-TAQAAQMIKLYTG   88 (118)
T ss_dssp             CSSCSEEEEEEGGGHHHHHHHHHHHHHTTCCEEEEEECSSCSCCHHHHHHHHTTCSCCCCCCCCC-CCCHHHHHHHHHC
T ss_pred             CCCCCEEEEEECccHHHHHHHHHHHHHCCCceEEEEECeEecCCHHHHHHHHcCCCEEEEEECCC-CCcHHHHHHHHcC
Confidence            36789999999999999999999999999999999999999999999999999999999999985 7999999987764

>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*

Probab=94.33  E-value=0.2  Score=50.20  Aligned_cols=149  Identities=13%  Similarity=0.013  Sum_probs=90.2

Q ss_pred             cccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhC----CCceeechhhHHHHHHHHHHHhccCCeeE
Q 020510           36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYG----PERVLDTPITEAGFTGIGVGAAYYGLKPV  111 (325)
Q Consensus        36 ~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~g----p~R~i~~GIaE~~~vg~A~GlA~~G~~p~  111 (325)
                      +++..+++.+.|.+   .+-+.++..+...    .    ..|.+.+-    .=|++- ...|+++..+|.|.|+..-+|-
T Consensus         3 ~~~~a~~lv~~L~~---~GV~~vfg~PG~~----~----~~l~~al~~~~~~i~~i~-~~~E~~Aa~~A~GyAr~tgk~~   70 (590)
T 1v5e_A            3 KINIGLAVMKILES---WGADTIYGIPSGT----L----SSLMDAMGEEENNVKFLQ-VKHEEVGAMAAVMQSKFGGNLG   70 (590)
T ss_dssp             EEEHHHHHHHHHHH---TTCCEEEECCCTT----T----HHHHTTSSSTTCCCEEEE-CSSHHHHHHHHHHHHHTTCCCC
T ss_pred             CccHHHHHHHHHHH---cCCCEEEEecCCc----h----HHHHHHHHhcCCCCeEEe-eCCHHHHHHHHHHHHHHHCCCE
Confidence            45666777776654   3566666654211    1    23444331    124555 4899999999999999855443


Q ss_pred             Ee-cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCC--CCCCCCcch--HHHHHHhcCCCcEEEeeCCHHH
Q 020510          112 VE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGAQHSH--CYAAWYASVPGLKVLSPYSSED  186 (325)
Q Consensus       112 v~-~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~G~tHs~--~~~a~~~~iP~~~V~~P~d~~e  186 (325)
                      ++ +.+...+.-++--|.+  |+.       .++|++++..+-..  .+.+. + |  ....+++.+-.. .+.+.++++
T Consensus        71 v~~~tsGpG~~N~~~gl~~--A~~-------~~vPll~Itg~~p~~~~g~~~-~-Q~~d~~~~~~~~tk~-~~~v~~~~~  138 (590)
T 1v5e_A           71 VTVGSGGPGASHLINGLYD--AAM-------DNIPVVAILGSRPQRELNMDA-F-QELNQNPMYDHIAVY-NRRVAYAEQ  138 (590)
T ss_dssp             EEEECTTHHHHTTHHHHHH--HHH-------HTCCEEEEEEECCGGGTTTTC-T-TCCCCHHHHHTTCSE-EEECCSGGG
T ss_pred             EEEeCcChHHHHHHHHHHH--HHh-------cCCCEEEEcCCCCcccCCCCc-c-cccCHHHHHHhhccE-EEEeCCHHH
Confidence            33 2222333334444543  222       57998887643222  22222 2 3  224899998765 677888988


Q ss_pred             HHHHHHHhHh----C-CCcEEEEeCccc
Q 020510          187 ARGLLKAAIR----D-PDPVVFLENELL  209 (325)
Q Consensus       187 ~~~~l~~a~~----~-~~Pv~ir~~~~l  209 (325)
                      +..+++.|++    . ++||+| .+...
T Consensus       139 ~~~~i~~A~~~A~~~~~GPV~l-iP~dv  165 (590)
T 1v5e_A          139 LPKLVDEAARMAIAKRGVAVLE-VPGDF  165 (590)
T ss_dssp             HHHHHHHHHHHHHHTTSEEEEE-EETTG
T ss_pred             HHHHHHHHHHHHhcCCCceEEE-Eccch
Confidence            8888887776    2 489999 88654

>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*

Probab=93.09  E-value=1.2  Score=44.11  Aligned_cols=152  Identities=18%  Similarity=0.048  Sum_probs=89.8

Q ss_pred             cccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeeEE-e
Q 020510           36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVV-E  113 (325)
Q Consensus        36 ~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~-G~~p~v-~  113 (325)
                      +++..+++.+.|.+.   +-+.++..+...    ...+.+.+.+ . +=|++.+ ..|+++.-+|.|.|+. |...++ .
T Consensus         3 ~~~~a~~l~~~L~~~---GV~~vfg~PG~~----~~~l~~al~~-~-~i~~i~~-~~E~~Aa~~A~Gyar~tg~p~v~~~   72 (563)
T 2uz1_A            3 MITGGELVVRTLIKA---GVEHLFGLHGAH----IDTIFQACLD-H-DVPIIDT-RHEAAAGHAAEGYARAGAKLGVALV   72 (563)
T ss_dssp             EEEHHHHHHHHHHHH---TCCCEEECCCGG----GHHHHHHHHH-H-TCCEEEC-SSHHHHHHHHHHHHHHHTSCEEEEE
T ss_pred             ccCHHHHHHHHHHHC---CCCEEEECCCCc----hHHHHHHHHh-c-CCcEEee-CCHHHHHHHHHHHHHHhCCCEEEEE
Confidence            456677777777654   444555544111    1223344443 2 2477775 9999999999999988 543333 3


Q ss_pred             cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCC--CCCCCCcc-hHHHHHHhcCCCcEEEeeCCHHHHHHH
Q 020510          114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGAQHS-HCYAAWYASVPGLKVLSPYSSEDARGL  190 (325)
Q Consensus       114 ~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~G~tHs-~~~~a~~~~iP~~~V~~P~d~~e~~~~  190 (325)
                      |+.+ ...-++--+.+  |+.       .++|++++..+-..  .+.|..+. .....+++.+... .+...+++++...
T Consensus        73 TsGp-G~~N~~~~l~~--A~~-------~~~Pll~itg~~~~~~~~~~~~Q~~~d~~~~~~~~tk~-~~~v~~~~~~~~~  141 (563)
T 2uz1_A           73 TAGG-GFTNAVTPIAN--AWL-------DRTPVLFLTGSGALRDDETNTLQAGIDQVAMAAPITKW-AHRVMATEHIPRL  141 (563)
T ss_dssp             CTTH-HHHTTHHHHHH--HHH-------HTCCEEEEEEECCGGGTTSCCTTCCCCHHHHHGGGCSE-EEECCCGGGHHHH
T ss_pred             ccCc-cHHHHHHHHHH--HHh-------cCCCEEEEeCCCCcccCCchhhhhhccHHHHhhhhhce-EEEcCCHHHHHHH
Confidence            4433 33434444543  232       57998887643222  22333221 1134899988753 5566778888888


Q ss_pred             HHHhHh----C-CCcEEEEeCcc
Q 020510          191 LKAAIR----D-PDPVVFLENEL  208 (325)
Q Consensus       191 l~~a~~----~-~~Pv~ir~~~~  208 (325)
                      ++.|++    . ++||+|..+..
T Consensus       142 l~~A~~~a~~~~~GPV~l~iP~d  164 (563)
T 2uz1_A          142 VMQAIRAALSAPRGPVLLDLPWD  164 (563)
T ss_dssp             HHHHHHHHHSSSCCCEEEEEEHH
T ss_pred             HHHHHHHhcCCCCceEEEEeCHH
Confidence            877776    2 58999976654

>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*

Probab=92.93  E-value=0.84  Score=45.27  Aligned_cols=151  Identities=15%  Similarity=0.093  Sum_probs=86.2

Q ss_pred             ccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeeE-Eec
Q 020510           37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPV-VEF  114 (325)
Q Consensus        37 ~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~-G~~p~-v~~  114 (325)
                      ++..+++.+.|.+.   +-+.|+..+...    ...+.+.+.+ - .=|++.+ ..|+++.-+|.|.|+. |...+ +.|
T Consensus        11 ~~~a~~l~~~L~~~---GV~~vfg~PG~~----~~~l~~al~~-~-~i~~v~~-~~E~~Aa~~A~Gyar~tg~p~v~~~T   80 (566)
T 1ozh_A           11 AHGADLVVSQLEAQ---GVRQVFGIPGAK----IDKVFDSLLD-S-SIRIIPV-RHEANAAFMAAAVGRITGKAGVALVT   80 (566)
T ss_dssp             SCHHHHHHHHHHHH---TCCEEEEECCTT----THHHHHHGGG-S-SSEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEEC
T ss_pred             CcHHHHHHHHHHHC---CCCEEEEcCCCc----hHHHHHHHHh-C-CCcEEEe-CCHHHHHHHHHHHHHHHCCCEEEEEc
Confidence            45567777776653   455555554211    1122233433 1 2367665 8999999999999987 54333 334


Q ss_pred             ccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCC-Ccch-HHHHHHhcCCCcEEEeeCCHHHHHHHHH
Q 020510          115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGA-QHSH-CYAAWYASVPGLKVLSPYSSEDARGLLK  192 (325)
Q Consensus       115 ~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~-tHs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~  192 (325)
                      +.+ ...-++--+.+  |+.       .++|++++..+-.....|. .|+. ....+++.+... .+...+++++...++
T Consensus        81 sGp-G~~N~~~~l~~--A~~-------~~vPll~itg~~~~~~~~~~~~Q~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~  149 (566)
T 1ozh_A           81 SGP-GCSNLITGMAT--ANS-------EGDPVVALGGAVKRADKAKQVHQSMDTVAMFSPVTKY-AIEVTAPDALAEVVS  149 (566)
T ss_dssp             STH-HHHTTHHHHHH--HHH-------HTCCEEEEEEECCTTTC------CCCHHHHHGGGCSE-EEECCSGGGHHHHHH
T ss_pred             cCh-HHHHHHHHHHH--HHh-------cCCCEEEEeCCCccccCCCCcccccCHHHHHHHHhhe-EEEcCCHHHHHHHHH
Confidence            433 33334444433  222       5799888764322222221 2311 334899988754 456677777777777


Q ss_pred             HhHh----C-CCcEEEEeCcc
Q 020510          193 AAIR----D-PDPVVFLENEL  208 (325)
Q Consensus       193 ~a~~----~-~~Pv~ir~~~~  208 (325)
                      .|++    . ++||+|..+..
T Consensus       150 ~A~~~A~~~r~GPV~l~iP~d  170 (566)
T 1ozh_A          150 NAFRAAEQGRPGSAFVSLPQD  170 (566)
T ss_dssp             HHHHHHHSSSCCEEEEEEEHH
T ss_pred             HHHHHHhcCCCCeEEEEeChh
Confidence            6665    2 58999986654

>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*

Probab=92.73  E-value=1  Score=44.80  Aligned_cols=153  Identities=16%  Similarity=0.050  Sum_probs=89.8

Q ss_pred             cccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeeE-Ee
Q 020510           36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPV-VE  113 (325)
Q Consensus        36 ~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~-G~~p~-v~  113 (325)
                      .++..+++.+.|.+   .+-+.|+..+...    ...+.+.+.+.- .=|++.+ ..|+++..+|.|.|+. |...+ +.
T Consensus        11 ~~~~a~~l~~~L~~---~GV~~vfg~PG~~----~~~l~~al~~~~-~i~~i~~-~~E~~Aa~~A~Gyar~tg~p~v~~~   81 (590)
T 1ybh_A           11 PRKGADILVEALER---QGVETVFAYPGGA----SMEIHQALTRSS-SIRNVLP-RHEQGGVFAAEGYARSSGKPGICIA   81 (590)
T ss_dssp             CEEHHHHHHHHHHT---TTCCEEEECCCGG----GHHHHHHHHHCS-SCEECCC-SSHHHHHHHHHHHHHHHSSCEEEEE
T ss_pred             CccHHHHHHHHHHH---cCCCEEEEcCCCc----hHHHHHHHhccC-CccEEee-CCHHHHHHHHHHHHHHHCCCEEEEe
Confidence            35666666666654   3556666554211    122333443321 1356664 8999999999999987 54433 33


Q ss_pred             cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCC--CCCCCCcchHHHHHHhcCCCcEEEeeCCHHHHHHHH
Q 020510          114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLL  191 (325)
Q Consensus       114 ~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l  191 (325)
                      |+.+ ...-++--|.+  |+.       .++|++++..+-..  .+.+..+......+++.+-.. .+...+++++..++
T Consensus        82 TsGp-G~~N~~~gv~~--A~~-------~~vPll~itg~~~~~~~g~~~~Q~~d~~~~~~~~~k~-~~~v~~~~~i~~~l  150 (590)
T 1ybh_A           82 TSGP-GATNLVSGLAD--ALL-------DSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKH-NYLVMDVEDIPRII  150 (590)
T ss_dssp             CTTH-HHHTTHHHHHH--HHH-------HTCCEEEEEEECCGGGTTTTCTTCCCHHHHHGGGSSE-EEECCCGGGHHHHH
T ss_pred             ccCc-hHHHHHHHHHH--HHh-------hCCCEEEEeCcCCccccCCCcccccCHHHHHHHHhCe-EEecCCHHHHHHHH
Confidence            4433 33334444433  222       58998887643222  223322212334899988764 56667888899888


Q ss_pred             HHhHhC-----CCcEEEEeCcc
Q 020510          192 KAAIRD-----PDPVVFLENEL  208 (325)
Q Consensus       192 ~~a~~~-----~~Pv~ir~~~~  208 (325)
                      +.|++.     ++||+|..+..
T Consensus       151 ~~A~~~a~~~~~GPV~l~iP~d  172 (590)
T 1ybh_A          151 EEAFFLATSGRPGPVLVDVPKD  172 (590)
T ss_dssp             HHHHHHHHSSSCCEEEEEEEHH
T ss_pred             HHHHHHHhhCCCceEEEEeCcc
Confidence            888872     58999976654

>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*

Probab=92.27  E-value=2.7  Score=41.56  Aligned_cols=152  Identities=16%  Similarity=0.111  Sum_probs=87.0

Q ss_pred             ccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeeEEecc
Q 020510           37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVVEFM  115 (325)
Q Consensus        37 ~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~~~  115 (325)
                      ++..+++.+.|.+   .+-+.|+..+...    ...+.+.+.+.- .=|++.+ ..|+++.-+|.|.|+. |.-.++.|+
T Consensus         3 ~~~a~~l~~~L~~---~GV~~vfg~PG~~----~~~l~~al~~~~-~i~~i~~-~~E~~Aa~~A~Gyar~tg~~v~~~Ts   73 (568)
T 2wvg_A            3 YTVGTYLAERLVQ---IGLKHHFAVAGDY----NLVLLDNLLLNK-NMEQVYC-CNELNCGFSAEGYARAKGAAAAVVTY   73 (568)
T ss_dssp             EEHHHHHHHHHHH---TTCSEEEECCCTT----THHHHHHHHTCT-TSEEEEC-SSHHHHHHHHHHHHHHHSCEEEEECT
T ss_pred             cCHHHHHHHHHHH---cCCCEEEeCCCCc----cHHHHHHHhccC-CceEecc-CcHHHHHHHHHHHHHhhCCeEEEEeC
Confidence            4555666666554   3566666654211    112233343221 1367765 9999999999999976 733344455


Q ss_pred             cccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCC--CCCCC--Ccc----h--HHHHHHhcCCCcEEEeeCCHH
Q 020510          116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGA--QHS----H--CYAAWYASVPGLKVLSPYSSE  185 (325)
Q Consensus       116 ~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~G~--tHs----~--~~~a~~~~iP~~~V~~P~d~~  185 (325)
                      .+. ..-++--|.+  |+.       .++|++++..+-..  .+.+.  +|.    |  ....+++.+-.. .+...+++
T Consensus        74 GpG-~~N~~~gia~--A~~-------~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~-~~~v~~~~  142 (568)
T 2wvg_A           74 SVG-ALSAFDAIGG--AYA-------ENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAA-AEAIYTPE  142 (568)
T ss_dssp             TTT-HHHHHHHHHH--HHH-------TTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCHHHHHHTTSCSC-EEEECSGG
T ss_pred             CCC-HHHHHHHHHH--Hhh-------hCCCEEEEeCCCChhHhccCcceeeeccccchHHHHHHHHhhEeE-EEEeCCHH
Confidence            443 3334555544  332       57998887643222  22221  221    2  235899988765 45556777


Q ss_pred             HHHHHHHHhHh----CCCcEEEEeCcc
Q 020510          186 DARGLLKAAIR----DPDPVVFLENEL  208 (325)
Q Consensus       186 e~~~~l~~a~~----~~~Pv~ir~~~~  208 (325)
                      ++...++.|++    .++||+|..+..
T Consensus       143 ~~~~~l~~A~~~A~~~~GPV~l~iP~d  169 (568)
T 2wvg_A          143 EAPAKIDHVIKTALREKKPVYLEIACN  169 (568)
T ss_dssp             GHHHHHHHHHHHHHHHTCCEEEEEEGG
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEechh
Confidence            76666665554    469999987654

>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}

Probab=92.06  E-value=1.7  Score=43.57  Aligned_cols=152  Identities=13%  Similarity=0.002  Sum_probs=91.1

Q ss_pred             ccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeeEEe--
Q 020510           37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVVE--  113 (325)
Q Consensus        37 ~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~--  113 (325)
                      ++..+++.+.|.+   .+-+.++..+...    ...+.+.+.+ .+.=|++. ...|+++..+|.|.|+. |.+|-++  
T Consensus        27 ~~~a~~l~~~L~~---~GV~~vfg~PG~~----~~~l~~al~~-~~~i~~i~-~~~E~~Aa~~A~GyAr~tgg~~~v~~~   97 (616)
T 2pan_A           27 MRAVDAAMYVLEK---EGITTAFGVPGAA----INPFYSAMRK-HGGIRHIL-ARHVEGASHMAEGYTRATAGNIGVCLG   97 (616)
T ss_dssp             EEHHHHHHHHHHH---TTCCEEEECCCGG----GHHHHHHHHH-HCCCEEEE-CSSHHHHHHHHHHHHHHSTTCCEEEEE
T ss_pred             CcHHHHHHHHHHH---CCCCEEEECCCCc----cHHHHHHHHh-cCCCcEEe-eCCHHHHHHHHHHHHHhcCCCceEEEe
Confidence            5667777777753   4666666655211    1223344433 31235665 49999999999999988 4565443  


Q ss_pred             cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCC--CCCCCCcchHHHHHHhcCCCcEEEeeCCHHHHHHHH
Q 020510          114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLL  191 (325)
Q Consensus       114 ~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l  191 (325)
                      |..+ ...-++.-|.+ +.+        .++|++++..+-..  .+.|..+......+++.+-... +...+++++..++
T Consensus        98 TsGp-G~~N~~~~l~~-A~~--------~~vPlvvItg~~p~~~~~~~~~Q~~d~~~~~~~~tk~~-~~v~~~~~i~~~l  166 (616)
T 2pan_A           98 TSGP-AGTDMITALYS-ASA--------DSIPILCITGQAPRARLHKEDFQAVDIEAIAKPVSKMA-VTVREAALVPRVL  166 (616)
T ss_dssp             CSTH-HHHTSHHHHHH-HHH--------TTCCEEEEEEECCGGGTTTTCTTCCCHHHHHGGGSSEE-EECCSGGGHHHHH
T ss_pred             CCCc-hHHHHHHHHHH-HHh--------cCCCEEEEecCCcccccCcccccccCHHHHHHHHHHhh-cccCCHHHHHHHH
Confidence            5433 33444555544 222        58998887643222  2223222112348888887654 4556788888888


Q ss_pred             HHhHhC-----CCcEEEEeCcc
Q 020510          192 KAAIRD-----PDPVVFLENEL  208 (325)
Q Consensus       192 ~~a~~~-----~~Pv~ir~~~~  208 (325)
                      +.|++.     ++||+|-.+..
T Consensus       167 ~~A~~~A~~~r~GPV~l~iP~d  188 (616)
T 2pan_A          167 QQAFHLMRSGRPGPVLVDLPFD  188 (616)
T ss_dssp             HHHHHHHHSSSCCCEEEEEEHH
T ss_pred             HHHHHHHhcCCCceEEEEcchh
Confidence            888762     58999976543

>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*

Probab=91.99  E-value=2.6  Score=41.47  Aligned_cols=152  Identities=16%  Similarity=0.086  Sum_probs=85.9

Q ss_pred             ccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeeE-Eec
Q 020510           37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPV-VEF  114 (325)
Q Consensus        37 ~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~-G~~p~-v~~  114 (325)
                      ++..+++.+.|.+   .+-+.|+..+  +.  ....+.+.+.+ .+.=|++.+ ..|+++.-+|-|.|+. |...+ ++|
T Consensus         3 ~~~a~~l~~~L~~---~GV~~vfg~P--G~--~~~~l~dal~~-~~~i~~i~~-~~E~~Aa~~A~GyAr~tg~~~v~~~T   73 (549)
T 3eya_A            3 QTVAAYIAKTLES---AGVKRIWGVT--GD--SLNGLSDSLNR-MGTIEWMST-RHEEVAAFAAGAEAQLSGELAVCAGS   73 (549)
T ss_dssp             CBHHHHHHHHHHH---TTCCEEEECC--CG--GGHHHHHHHHH-HCSSEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEEC
T ss_pred             ccHHHHHHHHHHH---CCCCEEEEcC--CC--chHHHHHHHHh-cCCCeEEEe-CChHHHHHHHHHHHHHhCCCEEEEeC
Confidence            3455566665544   3555555544  21  11223344443 212366664 8999999999999987 54333 335


Q ss_pred             ccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCC--CCCCCCcchHHHHHHhcCCCcEEEeeCCHHHHHHHHH
Q 020510          115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLK  192 (325)
Q Consensus       115 ~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~  192 (325)
                      +.+ ...-++--|.+  |+.       .++|++++..+-..  .+.|..+......+++.+-.. .+...+++++...++
T Consensus        74 sGp-G~~N~~~gi~~--A~~-------~~vPvl~itg~~~~~~~~~~~~Q~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~  142 (549)
T 3eya_A           74 CGP-GNLHLINGLFD--CHR-------NHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHY-CELVSSPEQIPQVLA  142 (549)
T ss_dssp             TTH-HHHTTHHHHHH--HHH-------TTCCEEEEEEESCGGGTTSCCTTCCCHHHHTSTTCSE-EEECCSGGGHHHHHH
T ss_pred             CCC-cHhhhHHHHHH--HHh-------hCCCEEEEeCCCchhhcCCCCCCccCHHHHHhhhhhe-EEEeCCHHHHHHHHH
Confidence            433 33334444433  332       58998887643222  222322212335888888653 445567777776666


Q ss_pred             HhHh----CCCcEEEEeCcc
Q 020510          193 AAIR----DPDPVVFLENEL  208 (325)
Q Consensus       193 ~a~~----~~~Pv~ir~~~~  208 (325)
                      .|++    .++||+|..+..
T Consensus       143 ~A~~~A~~~~GPV~l~iP~d  162 (549)
T 3eya_A          143 IAMRKAVLNRGVSVVVLPGD  162 (549)
T ss_dssp             HHHHHHHHTTSEEEEEEEHH
T ss_pred             HHHHHHhhCCCCEEEEeChh
Confidence            6654    578999986644

>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}

Probab=91.92  E-value=2.6  Score=41.68  Aligned_cols=151  Identities=15%  Similarity=0.084  Sum_probs=85.3

Q ss_pred             ccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeeE-Eec
Q 020510           37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPV-VEF  114 (325)
Q Consensus        37 ~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~-G~~p~-v~~  114 (325)
                      ++..+++.+.|.+   .+-+.|+..+...    ...+.+.+.+.- .=|++. ...|+++..+|.|.|+. | ..+ +.|
T Consensus         3 ~~~a~~l~~~L~~---~GV~~vfg~PG~~----~~~l~~al~~~~-~i~~v~-~~~E~~Aa~~A~Gyar~tg-~~v~~~T   72 (566)
T 2vbi_A            3 YTVGMYLAERLVQ---IGLKHHFAVAGDY----NLVLLDQLLLNK-DMKQIY-CCNELNCGFSAEGYARSNG-AAAAVVT   72 (566)
T ss_dssp             CBHHHHHHHHHHH---HTCSEEEECCCTT----THHHHHHHHTCT-TSEEEE-CSSHHHHHHHHHHHHHHHS-CEEEEEC
T ss_pred             cCHHHHHHHHHHH---cCCCEEEeCCCCc----cHHHHHHHhcCC-CCeEEe-eCcHHHHHHHHHHHHhhcC-CeEEEEe
Confidence            4566667666655   3556666654211    112223343221 125666 48999999999999987 7 433 334


Q ss_pred             ccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCC--CCCCC--Ccc----h--HHHHHHhcCCCcEEEeeCCH
Q 020510          115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGA--QHS----H--CYAAWYASVPGLKVLSPYSS  184 (325)
Q Consensus       115 ~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~G~--tHs----~--~~~a~~~~iP~~~V~~P~d~  184 (325)
                      +.+. ..-++--|.+  |+.       .++|++++..+-..  .+.+.  +|.    +  ....+++.+-- ..+.+.++
T Consensus        73 sGpG-~~N~~~gia~--A~~-------~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk-~~~~v~~~  141 (566)
T 2vbi_A           73 FSVG-AISAMNALGG--AYA-------ENLPVILISGAPNSNDQGTGHILHHTIGKTDYSYQLEMARQVTC-AAESITDA  141 (566)
T ss_dssp             TTTT-HHHHHHHHHH--HHH-------TTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCTHHHHHHHTTCS-EEEEECSS
T ss_pred             CCCC-HHHHHHHHHH--HHh-------hCCCEEEEECCCChHHhccCceeeeeccCcchHHHHHHHhhhEe-EEEEeCCH
Confidence            4333 3334555544  332       57998887643222  22221  231    2  23489998865 34455566


Q ss_pred             HHHHHHHHHhHh----CCCcEEEEeCcc
Q 020510          185 EDARGLLKAAIR----DPDPVVFLENEL  208 (325)
Q Consensus       185 ~e~~~~l~~a~~----~~~Pv~ir~~~~  208 (325)
                      +++...++.|++    .++||+|..+..
T Consensus       142 ~~~~~~l~~A~~~a~~~~GPV~l~iP~d  169 (566)
T 2vbi_A          142 HSAPAKIDHVIRTALRERKPAYLDIACN  169 (566)
T ss_dssp             SSHHHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEechh
Confidence            655555555554    469999987654

>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*

Probab=91.34  E-value=1.2  Score=44.17  Aligned_cols=152  Identities=12%  Similarity=-0.041  Sum_probs=89.3

Q ss_pred             cccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCee--EEe
Q 020510           36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKP--VVE  113 (325)
Q Consensus        36 ~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p--~v~  113 (325)
                      +++..+++.+.|.+   .+-+.|+..+-...   ...+.+.+.   + =|++.+ ..|+++.-+|.|.|+..-+|  .+.
T Consensus        11 ~~~~a~~l~~~L~~---~GV~~vfg~PG~~~---~~~l~~al~---~-i~~i~~-~~E~~Aa~~A~Gyar~tg~p~v~~~   79 (573)
T 2iht_A           11 KPTAAHALLSRLRD---HGVGKVFGVVGREA---ASILFDEVE---G-IDFVLT-RHEFTAGVAADVLARITGRPQACWA   79 (573)
T ss_dssp             CCCHHHHHHHHHHH---TTCCEEEECCCGGG---GTCCSCSST---T-CEEEEC-SSHHHHHHHHHHHHHHHCSCEEEEE
T ss_pred             CccHHHHHHHHHHH---CCCCEEEEecCCcc---hhHHHHHHc---C-CeEEee-CCHHHHHHHHHHHHHHHCCCEEEEE
Confidence            35666777766655   34555555541110   112223333   2 366664 89999999999999884444  333


Q ss_pred             cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCC--CCC-CCCcchHHHHHHhcCCCcEEEeeCCHHHHHHH
Q 020510          114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGV-GAQHSHCYAAWYASVPGLKVLSPYSSEDARGL  190 (325)
Q Consensus       114 ~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~-G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~  190 (325)
                      |..+ ...-++.-+.+  |+.       .++|++++..+-..  .+. +..|......+++.+... .+...+++++...
T Consensus        80 TsGp-G~~N~~~~v~~--A~~-------~~~Pll~itg~~~~~~~~~~~~~Q~~d~~~~~~~~~k~-~~~v~~~~~~~~~  148 (573)
T 2iht_A           80 TLGP-GMTNLSTGIAT--SVL-------DRSPVIALAAQSESHDIFPNDTHQCLDSVAIVAPMSKY-AVELQRPHEITDL  148 (573)
T ss_dssp             CTTH-HHHHHHHHHHH--HHH-------HTCCEEEEEEESCGGGCCTTTSTTCCCHHHHHGGGSSE-EEECCSGGGHHHH
T ss_pred             ccCc-hHHHHHHHHHH--HHh-------hCCCEEEEcccCcccccCCcCccccCCHHHHHHhHhhE-EEEcCCHHHHHHH
Confidence            4433 34445555544  222       57998887644222  233 333322335899988754 4556677778777


Q ss_pred             HHHhHh----C-CCcEEEEeCccc
Q 020510          191 LKAAIR----D-PDPVVFLENELL  209 (325)
Q Consensus       191 l~~a~~----~-~~Pv~ir~~~~l  209 (325)
                      ++.|++    . ++||+|..+...
T Consensus       149 i~~A~~~A~~~~~GPV~l~iP~dv  172 (573)
T 2iht_A          149 VDSAVNAAMTEPVGPSFISLPVDL  172 (573)
T ss_dssp             HHHHHHHHTBSSCCCEEEEEEHHH
T ss_pred             HHHHHHHHhcCCCceEEEEecchH
Confidence            777776    2 489999876543

>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*

Probab=91.28  E-value=0.8  Score=44.92  Aligned_cols=150  Identities=16%  Similarity=0.100  Sum_probs=84.4

Q ss_pred             cHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCC-CceeechhhHHHHHHHHHHHhcc-CCeeEEecc
Q 020510           38 MVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGP-ERVLDTPITEAGFTGIGVGAAYY-GLKPVVEFM  115 (325)
Q Consensus        38 s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp-~R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~~~  115 (325)
                      +..+++.+.|.+   .+-+.++..+.      ...  ..|.+.+.+ =|++. ...|+++..+|.|.|+. |...++.+.
T Consensus         3 ~~a~~l~~~L~~---~GV~~vfg~PG------~~~--~~l~~al~~~i~~i~-~~~E~~Aa~~A~Gyar~tg~~~v~~~t   70 (528)
T 1q6z_A            3 SVHGTTYELLRR---QGIDTVFGNPG------SNA--LPFLKDFPEDFRYIL-ALQEACVVGIADGYAQASRKPAFINLH   70 (528)
T ss_dssp             BHHHHHHHHHHH---TTCCEEEECCC------GGG--HHHHTTCCTTCEEEE-CSSHHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred             cHHHHHHHHHHH---CCCCEEEECCC------cch--HHHHHHHhhcCcEEE-ECcHHHHHHHHHHHHHHhCCCEEEEEc
Confidence            344555555543   35566665542      111  234444311 25665 48999999999999998 655444333


Q ss_pred             cccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCC--CCCCC-CcchHHHHHHhcCCCcEEEeeCCHHHHHHHHH
Q 020510          116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGA-QHSHCYAAWYASVPGLKVLSPYSSEDARGLLK  192 (325)
Q Consensus       116 ~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~G~-tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~  192 (325)
                      +.....-++.-|.+  |+.       .++|++++..+-..  .+.+. +|......+++.+... .+.+.+++++...++
T Consensus        71 sGpG~~N~~~~l~~--A~~-------~~~Pll~itg~~~~~~~~~~~~q~~~d~~~~~~~~~k~-~~~v~~~~~~~~~i~  140 (528)
T 1q6z_A           71 SAAGTGNAMGALSN--AWN-------SHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKW-SYEPASAAEVPHAMS  140 (528)
T ss_dssp             HHHHHHHTHHHHHH--HHH-------TTCCEEEEEEECCHHHHTTTCTTCCTTGGGSSTTSCSC-EECCSSGGGHHHHHH
T ss_pred             CChHHHHHHHHHHH--Hhh-------cCCCEEEEeCCCcccccCCCcccccccHHHHHHHhhHh-hhcCCCHHHHHHHHH
Confidence            22334445555544  332       58998887543222  12222 2211224788877654 455566776666666


Q ss_pred             HhHh----C-CCcEEEEeCccc
Q 020510          193 AAIR----D-PDPVVFLENELL  209 (325)
Q Consensus       193 ~a~~----~-~~Pv~ir~~~~l  209 (325)
                      .|++    . ++||+|..+...
T Consensus       141 ~A~~~a~~~~~GPV~l~iP~d~  162 (528)
T 1q6z_A          141 RAIHMASMAPQGPVYLSVPYDD  162 (528)
T ss_dssp             HHHHHHHSSSCCCEEEEEEGGG
T ss_pred             HHHHHHhcCCCCcEEEEechhh
Confidence            6665    2 579999876543

>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*

Probab=91.08  E-value=5.4  Score=39.38  Aligned_cols=154  Identities=14%  Similarity=0.049  Sum_probs=83.3

Q ss_pred             cccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCC-ceeechhhHHHHHHHHHHHhcc-CCee-EE
Q 020510           36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPE-RVLDTPITEAGFTGIGVGAAYY-GLKP-VV  112 (325)
Q Consensus        36 ~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~-R~i~~GIaE~~~vg~A~GlA~~-G~~p-~v  112 (325)
                      +++..+++.+.|.+.   +-+.|+..+...    ...+.+.+.+ . +. +++. ...|+++.-+|.|.|+. |... ++
T Consensus        20 ~~~~a~~lv~~L~~~---GV~~vfg~PG~~----~~~l~~al~~-~-~~~~~i~-~~~E~~Aa~~A~GyAr~tgkp~v~~   89 (565)
T 2nxw_A           20 HMKLAEALLRALKDR---GAQAMFGIPGDF----ALPFFKVAEE-T-QILPLHT-LSHEPAVGFAADAAARYSSTLGVAA   89 (565)
T ss_dssp             CCBHHHHHHHHHHHT---TCCCEEECCCGG----GHHHHHHHHH-H-CSSCEEE-CSSHHHHHHHHHHHHHHHTSCEEEE
T ss_pred             CcCHHHHHHHHHHHc---CCCEEEECCCcc----hHHHHHHHHh-C-CCcEEEe-cCcHHHHHHHHHHHHHHhCCCeEEE
Confidence            467777777777653   445455544111    1233344443 3 33 3454 59999999999999987 5433 33


Q ss_pred             ecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCC--CCCCC--Ccc-hH---HHHHHhcCCCcEEEeeCCH
Q 020510          113 EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGA--QHS-HC---YAAWYASVPGLKVLSPYSS  184 (325)
Q Consensus       113 ~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~G~--tHs-~~---~~a~~~~iP~~~V~~P~d~  184 (325)
                      .|..+ ...-++--|.+  |+.       .++|++++..+-..  .+.+.  +|+ |.   ...+++.+-... +...++
T Consensus        90 ~TsGp-G~~N~~~gv~~--A~~-------~~vPll~itg~~~~~~~~~~~~~~~~~q~~d~q~~~~~~~~k~~-~~v~~~  158 (565)
T 2nxw_A           90 VTYGA-GAFNMVNAVAG--AYA-------EKSPVVVISGAPGTTEGNAGLLLHHQGRTLDTQFQVFKEITVAQ-ARLDDP  158 (565)
T ss_dssp             ECTTH-HHHTTHHHHHH--HHH-------TTCCEEEEEEECCTTCC--CCCC-------CHHHHHHTTSCSCE-EECCCT
T ss_pred             ECCCC-CHHHHHHHHHH--HHh-------hCCCEEEEeCCCChhhhccCcceeeeccchhhHHHHHHhhheEE-EEeCCH
Confidence            34433 33333444433  222       58998887643222  22232  242 22   237888886543 344455


Q ss_pred             HHHHHHHHHhHh----CCCcEEEEeCcccc
Q 020510          185 EDARGLLKAAIR----DPDPVVFLENELLY  210 (325)
Q Consensus       185 ~e~~~~l~~a~~----~~~Pv~ir~~~~l~  210 (325)
                      +++...++.|++    .++||+|..++.+.
T Consensus       159 ~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv~  188 (565)
T 2nxw_A          159 AKAPAEIARVLGAARAQSRPVYLEIPRNMV  188 (565)
T ss_dssp             TTHHHHHHHHHHHHHHHTCCEEEEEEGGGT
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEECChhhh
Confidence            555555554443    47999998776543

>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*

Probab=90.12  E-value=1.9  Score=42.96  Aligned_cols=153  Identities=15%  Similarity=0.107  Sum_probs=85.9

Q ss_pred             cccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCe-eEEe
Q 020510           36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLK-PVVE  113 (325)
Q Consensus        36 ~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~-G~~-p~v~  113 (325)
                      .++..+++.+.|.+   .+-+.|+..+  +.  ....+.+.+.+.-+.=|++.+ ..|+++.-+|.|.|+. |.. ..+.
T Consensus         3 ~~~~a~~l~~~L~~---~GV~~vfg~P--G~--~~~~l~~al~~~~~~i~~v~~-~hE~~Aa~~A~GyAr~tg~p~v~~~   74 (589)
T 2pgn_A            3 IKRGADLIVEALEE---YGTEQVVGFI--GH--TSHFVADAFSKSHLGKRVINP-ATELGGAWMVNGYNYVKDRSAAVGA   74 (589)
T ss_dssp             EEEHHHHHHHHHHH---TTCCEEEEEC--SG--GGHHHHHHHHTSTTSTTCBCC-SSHHHHHHHHHHHHHHHTSCCEEEE
T ss_pred             CCcHHHHHHHHHHH---cCCCEEEEec--CC--chHHHHHHHHhcCCCCeEEEe-CcHHHHHHHHHHHHHHHCCCEEEEE
Confidence            34566666666654   3455555554  21  111222334321001266665 8999999999999987 532 3444


Q ss_pred             cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCC--CCCC-CCcchHHHHHHhcCCCcEEEeeCCHHHHHHH
Q 020510          114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVG-AQHSHCYAAWYASVPGLKVLSPYSSEDARGL  190 (325)
Q Consensus       114 ~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~G-~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~  190 (325)
                      |+.+.. .-++--|.+  |+.       .++|++++..+-..  .+.+ ..|...... ++.+... .+...+++++...
T Consensus        75 TsGpG~-~N~~~gv~~--A~~-------~~vPll~itg~~~~~~~~~~~~~Q~~d~~~-~~~~tk~-~~~v~~~~~~~~~  142 (589)
T 2pgn_A           75 WHCVGN-LLLHAAMQE--ART-------GRIPAVHIGLNSDGRLAGRSEAAQQVPWQS-FTPIARS-TQRVERLDKVGEA  142 (589)
T ss_dssp             EEGGGG-GGCHHHHHH--HHH-------TTCCEEEEEEESCGGGTTCTTCSSCCCGGG-GTTTSSE-EEECCSGGGHHHH
T ss_pred             ecCchH-HHHHHHHHH--HHh-------cCCCEEEEecCCcccccCCCCcccccChhh-ccccEEE-EeecCCHHHHHHH
Confidence            554433 333344433  222       58998887643222  2333 333112236 8877654 4556677778777


Q ss_pred             HHHhHh----C-CCcEEEEeCcc
Q 020510          191 LKAAIR----D-PDPVVFLENEL  208 (325)
Q Consensus       191 l~~a~~----~-~~Pv~ir~~~~  208 (325)
                      ++.|++    . ++||+|..+..
T Consensus       143 i~~A~~~A~~~~~GPV~l~iP~d  165 (589)
T 2pgn_A          143 IHEAFRVAEGHPAGPAYVDIPFD  165 (589)
T ss_dssp             HHHHHHHHTSSSCCEEEEEEETH
T ss_pred             HHHHHHHHhcCCCccEEEEeCHh
Confidence            777776    2 48999987654

>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*

Probab=89.50  E-value=3.6  Score=41.05  Aligned_cols=155  Identities=12%  Similarity=0.039  Sum_probs=84.5

Q ss_pred             ccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeeEE-
Q 020510           35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVV-  112 (325)
Q Consensus        35 ~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~-G~~p~v-  112 (325)
                      .+++..+++.+.|.+   ..-+.|+..+  +.  ....+.+.|.+.-..=|++.+ ..|+++.-+|.|.|+. |...++ 
T Consensus         9 ~~~~~a~~l~~~L~~---~GV~~vfg~P--G~--~~~~l~dal~~~~~~i~~i~~-~hE~~Aa~aA~GyAr~tg~~gv~~   80 (603)
T 4feg_A            9 TNILAGAAVIKVLEA---WGVDHLYGIP--GG--SINSIMDALSAERDRIHYIQV-RHEEVGAMAAAADAKLTGKIGVCF   80 (603)
T ss_dssp             CEEEHHHHHHHHHHH---TTCCEEEECC--CG--GGHHHHHHHHHTTTTSEEEEC-SSHHHHHHHHHHHHHHHSSCEEEE
T ss_pred             CeeeHHHHHHHHHHH---CCCCEEEEeC--CC--chHHHHHHHHhccCCCeEEEe-cChHHHHHHHHHHHHHhCCceEEE
Confidence            456677777776654   3555566554  21  112333445432101367764 8999999999999977 543333 


Q ss_pred             ecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCCCcchHHHHHHhcCCCcEEEeeCCHHHHHHH
Q 020510          113 EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGL  190 (325)
Q Consensus       113 ~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~  190 (325)
                      .|+.+ ...-++--|.+  |+.       .++|++++..+-...  +.+.-+......+++.+-... +...+++++...
T Consensus        81 ~TsGp-G~~N~~~gia~--A~~-------~~vPvl~itG~~~~~~~~~~~~Q~~d~~~~~~~~tk~~-~~v~~~~~~~~~  149 (603)
T 4feg_A           81 GSAGP-GGTHLMNGLYD--ARE-------DHVPVLALIGQFGTTGMNMDTFQEMNENPIYADVADYN-VTAVNAATLPHV  149 (603)
T ss_dssp             ECTTH-HHHTTHHHHHH--HHH-------TTCCEEEEEEECCTTTTTSCCTTCCCCGGGGTTTCSEE-EECCCSTTHHHH
T ss_pred             ecCCc-hHHHHHHHHHH--HHH-------cCCCEEEEecCCcccccCCCccccccHHHHhhhhceEE-EEcCCHHHHHHH
Confidence            34433 33334444433  332       589988875432222  222211111237888876533 334455555555


Q ss_pred             HHHhHh----CCCcEEEEeCcc
Q 020510          191 LKAAIR----DPDPVVFLENEL  208 (325)
Q Consensus       191 l~~a~~----~~~Pv~ir~~~~  208 (325)
                      ++.|++    .++||+|-.+..
T Consensus       150 i~~A~~~A~~~~GPV~l~iP~d  171 (603)
T 4feg_A          150 IDEAIRRAYAHQGVAVVQIPVD  171 (603)
T ss_dssp             HHHHHHHHHHHTSEEEEEEETT
T ss_pred             HHHHHHHHhcCCCCEEEEeChh
Confidence            554444    579999987654

>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*

Probab=89.45  E-value=3  Score=42.39  Aligned_cols=149  Identities=13%  Similarity=0.037  Sum_probs=87.0

Q ss_pred             ccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCC---CceeechhhHHHHHHHHHHHhcc-CCe-eE
Q 020510           37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGP---ERVLDTPITEAGFTGIGVGAAYY-GLK-PV  111 (325)
Q Consensus        37 ~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp---~R~i~~GIaE~~~vg~A~GlA~~-G~~-p~  111 (325)
                      ++..+.+.+.|.+   .+-+.|+..+.      ...  ..|.+.+..   =|++.+ ..|+++.-+|.|.|+. |.. .+
T Consensus        82 ~~~a~~lv~~L~~---~GV~~vFg~PG------~~~--~pl~dal~~~~~i~~v~~-~hE~~Aa~aAdGyAr~tGkpgvv  149 (677)
T 1t9b_A           82 LTGGQIFNEMMSR---QNVDTVFGYPG------GAI--LPVYDAIHNSDKFNFVLP-KHEQGAGHMAEGYARASGKPGVV  149 (677)
T ss_dssp             CBHHHHHHHHHHH---TTCCEEEECCC------GGG--HHHHHHTTTCSSSEEECC-SSHHHHHHHHHHHHHHHSSCEEE
T ss_pred             CCHHHHHHHHHHH---cCCCEEEEecC------ccH--HHHHHHHHhCCCCeEEEe-CChHHHHHHHHHHHHHHCCCEEE
Confidence            3455555555543   35666666541      111  334444411   256664 8999999999999987 643 33


Q ss_pred             EecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCCCcchHHHHHHhcCCCcEEEeeCCHHHHHH
Q 020510          112 VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQHSHCYAAWYASVPGLKVLSPYSSEDARG  189 (325)
Q Consensus       112 v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~  189 (325)
                      +.|+.+ ...-++--|.+  |+.       .++|++++..+-...  +.+..+......+++.+-... +...+++++..
T Consensus       150 ~~TsGp-G~~N~~~gia~--A~~-------d~vPllvItG~~~~~~~g~~a~Q~~Dq~~i~~~~tk~~-~~v~~~~~i~~  218 (677)
T 1t9b_A          150 LVTSGP-GATNVVTPMAD--AFA-------DGIPMVVFTGQVPTSAIGTDAFQEADVVGISRSCTKWN-VMVKSVEELPL  218 (677)
T ss_dssp             EECSTH-HHHTTHHHHHH--HHH-------HTCCEEEEEEECCTTTTTSCCTTCCCHHHHTGGGSSEE-EECCSGGGHHH
T ss_pred             EECCCh-HHHHHHHHHHH--HHH-------cCCCEEEEeCCCChhhcCCCCccccCHHHHhhhheeEE-EEcCCHHHHHH
Confidence            445433 33334444433  222       589988876432222  223222112348888886544 44567888888


Q ss_pred             HHHHhHh-----CCCcEEEEeCcc
Q 020510          190 LLKAAIR-----DPDPVVFLENEL  208 (325)
Q Consensus       190 ~l~~a~~-----~~~Pv~ir~~~~  208 (325)
                      .++.|++     .++||+|-.+..
T Consensus       219 ~i~~A~~~A~~grpGPV~l~lP~D  242 (677)
T 1t9b_A          219 RINEAFEIATSGRPGPVLVDLPKD  242 (677)
T ss_dssp             HHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred             HHHHHHHHHhhCCCceEEEEcCHH
Confidence            8888877     258999976644

>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*

Probab=89.32  E-value=4.5  Score=39.81  Aligned_cols=154  Identities=11%  Similarity=0.024  Sum_probs=82.4

Q ss_pred             cccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeeEEec
Q 020510           36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVVEF  114 (325)
Q Consensus        36 ~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~~  114 (325)
                      +++..+++.+.|.+   .+-+.|+..+...    ...+.+.+.+.- .=|++. ...|+++.-+|.|.|+. |.-..+.|
T Consensus         3 ~~~~a~~l~~~L~~---~GV~~vfg~PG~~----~~~l~~al~~~~-~i~~v~-~~~E~~Aa~~A~Gyar~tg~~v~~~T   73 (563)
T 2vk8_A            3 EITLGKYLFERLKQ---VNVNTVFGLPGDF----NLSLLDKIYEVE-GMRWAG-NANELNAAYAADGYARIKGMSCIITT   73 (563)
T ss_dssp             EEEHHHHHHHHHHH---TTCCEEEECCCGG----GHHHHHGGGGST-TCEECC-CSSHHHHHHHHHHHHHHHSCEEEEEE
T ss_pred             ccCHHHHHHHHHHH---cCCCEEEEcCCcc----hHHHHHHHhhcC-CceEEc-cCchHHHHHHHHHHHHhhCCcEEEEc
Confidence            35566666666654   3556666654211    112223332211 125666 48999999999999987 72233334


Q ss_pred             ccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC----CCCCCc------chHHHHHHhcCCCcEEEeeCCH
Q 020510          115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA----GVGAQH------SHCYAAWYASVPGLKVLSPYSS  184 (325)
Q Consensus       115 ~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~----g~G~tH------s~~~~a~~~~iP~~~V~~P~d~  184 (325)
                      ..+ ...-++--|.+  |+.       .++|++++..+-...    +...+|      .|....+++.+-.. .+...++
T Consensus        74 sGp-G~~N~~~gia~--A~~-------~~~Pll~itg~~~~~~~~~~~~~~~~~g~~~~q~~~~~~~~~~k~-~~~v~~~  142 (563)
T 2vk8_A           74 FGV-GELSALNGIAG--SYA-------EHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFTVFHRMSANISET-TAMITDI  142 (563)
T ss_dssp             TTH-HHHHHHHHHHH--HHH-------HTCCEEEEEEECCHHHHHTTCCCTTSCSSSCSSHHHHHHHTTCSE-EEECCCT
T ss_pred             CCC-cHHHHHHHHHH--HHh-------hCCCEEEEECCCChHHhhcccccccccCCcchHHHHHHhhhhEEE-EEEeCCH
Confidence            433 33334444543  322       579988875432210    111111      13335889888754 3444554


Q ss_pred             HHH----HHHHHHhHhCCCcEEEEeCccc
Q 020510          185 EDA----RGLLKAAIRDPDPVVFLENELL  209 (325)
Q Consensus       185 ~e~----~~~l~~a~~~~~Pv~ir~~~~l  209 (325)
                      +++    .++++.|...++||+|..+..+
T Consensus       143 ~~~~~~i~~A~~~A~~~~GPV~l~iP~d~  171 (563)
T 2vk8_A          143 ATAPAEIDRCIRTTYVTQRPVYLGLPANL  171 (563)
T ss_dssp             TTHHHHHHHHHHHHHHHTSCEEEEEETTG
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEechhh
Confidence            444    4445555444699999876554

>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*

Probab=89.02  E-value=5.3  Score=39.34  Aligned_cols=154  Identities=10%  Similarity=0.005  Sum_probs=87.9

Q ss_pred             ccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCe-eEE
Q 020510           35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLK-PVV  112 (325)
Q Consensus        35 ~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~-G~~-p~v  112 (325)
                      +.++..+++.+.|.+.   +-+.|+..+-.    ....+.+.+.+ - .=|++.+ ..|+++.-+|.|.|+. |.. .++
T Consensus         6 ~~~~~a~~l~~~L~~~---GV~~vfg~PG~----~~~~l~~al~~-~-~i~~i~~-~hE~~Aa~~A~Gyar~tg~pgv~~   75 (564)
T 2q28_A            6 QMTDGMHIIVEALKQN---NIDTIYGVVGI----PVTDMARHAQA-E-GIRYIGF-RHEQSAGYAAAASGFLTQKPGICL   75 (564)
T ss_dssp             CEEEHHHHHHHHHHHT---TCCEEEECCCT----TTHHHHHHHHH-T-TCEEEEC-SSHHHHHHHHHHHHHHHSSCEEEE
T ss_pred             ccCcHHHHHHHHHHHc---CCCEEEECCCc----chHHHHHHHHh-C-CCcEEee-CCHHHHHHHHHHHHHHhCCCEEEE
Confidence            3456777777776653   55556655421    11222233432 2 2367775 9999999999999988 543 333


Q ss_pred             ecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--C--CCCCcchHHHHHHhcCCCcEEEeeCCHHHHH
Q 020510          113 EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--G--VGAQHSHCYAAWYASVPGLKVLSPYSSEDAR  188 (325)
Q Consensus       113 ~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g--~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~  188 (325)
                      +|+.+ ...-++--|.+  |+.       .++|++++..+-...  +  .|..+......+++.+-... +...+++++.
T Consensus        76 ~TsGp-G~~N~~~gi~~--A~~-------~~vPll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk~~-~~v~~~~~~~  144 (564)
T 2q28_A           76 TVSAP-GFLNGLTALAN--ATV-------NGFPMIMISGSSDRAIVDLQQGDYEELDQMNAAKPYAKAA-FRVNQPQDLG  144 (564)
T ss_dssp             ECSHH-HHHHHHHHHHH--HHH-------HTCCEEEEEEECCHHHHHTTSCCTTCCCHHHHHGGGSSEE-EECCSGGGHH
T ss_pred             EccCc-hHHHHHHHHHH--HHh-------cCCCEEEEeCCCCccccCCCCCccccccHHHHHHHhhhee-eecCCHHHHH
Confidence            44433 34444444533  222       589988876432221  1  22222112248888886643 4445666666


Q ss_pred             HHHHHhHh-----CCCcEEEEeCccc
Q 020510          189 GLLKAAIR-----DPDPVVFLENELL  209 (325)
Q Consensus       189 ~~l~~a~~-----~~~Pv~ir~~~~l  209 (325)
                      ..++.|++     .++||+|-.+..+
T Consensus       145 ~~i~~A~~~A~~~~~GPV~l~iP~dv  170 (564)
T 2q28_A          145 IALARAIRVSVSGRPGGVYLDLPANV  170 (564)
T ss_dssp             HHHHHHHHHHHSSSCCEEEEEEEHHH
T ss_pred             HHHHHHHHHHhcCCCceEEEEcCHHH
Confidence            66666665     3689999876543

>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*

Probab=88.94  E-value=4.8  Score=39.70  Aligned_cols=154  Identities=12%  Similarity=-0.001  Sum_probs=89.1

Q ss_pred             ccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCe-eEE
Q 020510           35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLK-PVV  112 (325)
Q Consensus        35 ~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~-G~~-p~v  112 (325)
                      .+++..+++.+.|.+.   +-+.|+..+-..    ...+.+.+.+ . .=|++.+ ..|+++.-+|.|.|+. |.. ..+
T Consensus         8 ~~~~~a~~l~~~L~~~---GV~~vfg~PG~~----~~~l~~al~~-~-~i~~i~~-~~E~~Aa~~A~GyAr~tg~pgv~~   77 (568)
T 2c31_A            8 ELTDGFHVLIDALKMN---DIDTMYGVVGIP----ITNLARMWQD-D-GQRFYSF-RHEQHAGYAASIAGYIEGKPGVCL   77 (568)
T ss_dssp             CEEEHHHHHHHHHHHT---TCCEEEECCCTT----THHHHHHHHH-T-TCEEEEC-SSHHHHHHHHHHHHHHHSSCEEEE
T ss_pred             CcccHHHHHHHHHHHc---CCCEEEEeCCCc----cHHHHHHHHh-C-CCcEEEe-CcHHHHHHHHHHHHHHhCCCEEEE
Confidence            4566777777777653   555566554211    1222334433 2 2467775 9999999999999988 543 333


Q ss_pred             ecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--C--CCCCcchHHHHHHhcCCCcEEEeeCCHHHHH
Q 020510          113 EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--G--VGAQHSHCYAAWYASVPGLKVLSPYSSEDAR  188 (325)
Q Consensus       113 ~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g--~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~  188 (325)
                      .|+.+ ...-++--|.+  |+.       .++|++++..+-...  +  .|..+......+++.+-.. .+...+++++.
T Consensus        78 ~TsGp-G~~N~~~~i~~--A~~-------~~vPll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk~-~~~v~~~~~~~  146 (568)
T 2c31_A           78 TVSAP-GFLNGVTSLAH--ATT-------NCFPMILLSGSSEREIVDLQQGDYEEMDQMNVARPHCKA-SFRINSIKDIP  146 (568)
T ss_dssp             ECSHH-HHHHHHHHHHH--HHH-------HTCCEEEEEEECCHHHHHTTCCCTTCCCHHHHSGGGSSE-EEECCSGGGHH
T ss_pred             EcCCc-cHHHHHHHHHH--HHh-------cCCCEEEEccCCCccccCCCCCcccccCHHHHHHhhhhe-eeecCCHHHHH
Confidence            44433 34444454543  222       589988876432221  1  2222211224788888664 44456666776


Q ss_pred             HHHHHhHh-----CCCcEEEEeCccc
Q 020510          189 GLLKAAIR-----DPDPVVFLENELL  209 (325)
Q Consensus       189 ~~l~~a~~-----~~~Pv~ir~~~~l  209 (325)
                      ..++.|++     .++||+|-.+..+
T Consensus       147 ~~i~~A~~~A~~~~~GPV~l~iP~dv  172 (568)
T 2c31_A          147 IGIARAVRTAVSGRPGGVYVDLPAKL  172 (568)
T ss_dssp             HHHHHHHHHHHSSSCCEEEEEEETHH
T ss_pred             HHHHHHHHHhcCCCCceEEEeCCHHH
Confidence            66666665     3589999876553

>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}

Probab=87.63  E-value=1.9  Score=42.74  Aligned_cols=147  Identities=16%  Similarity=0.067  Sum_probs=77.2

Q ss_pred             HHHHHHHHH-hcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCee-EEecccccH
Q 020510           43 LNSALDEEM-SADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKP-VVEFMTFNF  119 (325)
Q Consensus        43 ~~~~L~~l~-~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~-G~~p-~v~~~~~~f  119 (325)
                      .++.|.+.+ +..-+.|+..+-..    ...+.+.+.+ .+.=|++.+ ..|+++.-+|-|.|+. |... .+.|..+ .
T Consensus        13 ~a~~lv~~L~~~GV~~vFg~PG~~----~~~l~dal~~-~~~i~~i~~-~hE~~Aa~aAdGyAr~tG~pgv~~~TsGp-G   85 (578)
T 3lq1_A           13 YLAAFIEELVQAGVKEAIISPGSR----STPLALMMAE-HPILKIYVD-VDERSAGFFALGLAKASKRPVVLLCTSGT-A   85 (578)
T ss_dssp             HHHHHHHHHHHTTCCEEEECCCTT----THHHHHHHHH-CSSCEEEEC-SSHHHHHHHHHHHHHHHCCCEEEEECSSH-H
T ss_pred             HHHHHHHHHHHcCCCEEEECCCCc----cHHHHHHHHh-CCCceEEEe-cCcHHHHHHHHHHHHhhCCCEEEEECCch-h
Confidence            344444444 34566666654111    1223344443 212366765 7999999999999987 5433 3334433 3


Q ss_pred             HHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCC--CCCCCCcchH-H-HHHHhcCCCcEE--EeeCCHHH----HHH
Q 020510          120 SMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGAQHSHC-Y-AAWYASVPGLKV--LSPYSSED----ARG  189 (325)
Q Consensus       120 ~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~G~tHs~~-~-~a~~~~iP~~~V--~~P~d~~e----~~~  189 (325)
                      ..-++--|.+  |+.       ..+|++++..+-..  .+.|. + |. + ..+++.+-....  -.|.+..+    +..
T Consensus        86 ~~N~~~gia~--A~~-------d~vPll~itG~~p~~~~g~~~-~-Qe~d~~~~~~~~tk~~~~v~~~~~~~~~~~~i~~  154 (578)
T 3lq1_A           86 AANYFPAVAE--ANL-------SQIPLIVLTADRPHELRNVGA-P-QAMDQLHLYGSHVKDFTDMALPENSEEMLRYAKW  154 (578)
T ss_dssp             HHTTHHHHHH--HHH-------TTCCEEEEEEECCGGGTTSSC-T-TCCCCTTTTGGGSSEEEECCCCCCSHHHHHHHHH
T ss_pred             hhhhhHHHHH--HHh-------cCCCeEEEeCCCCHHhhcCCC-C-CCcCHhhHHhhheeeEeecCCCCCchHHHHHHHH
Confidence            3333344433  332       58998887643222  12222 2 32 2 377777754433  34555332    223


Q ss_pred             HHHHhHh----C-CCcEEEEeCc
Q 020510          190 LLKAAIR----D-PDPVVFLENE  207 (325)
Q Consensus       190 ~l~~a~~----~-~~Pv~ir~~~  207 (325)
                      +++.|++    . ++||+|-.+.
T Consensus       155 ~l~~A~~~A~~gr~GPV~l~iP~  177 (578)
T 3lq1_A          155 HGSRAVDIAMKTPRGPVHLNFPL  177 (578)
T ss_dssp             HHHHHHHHHHSSSCCCEEEEEEC
T ss_pred             HHHHHHHHhhCCCCCcEEEECcc
Confidence            4444444    2 6899997654

>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*

Probab=87.50  E-value=3  Score=41.09  Aligned_cols=148  Identities=12%  Similarity=0.081  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHhc-CCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCee-EEeccccc
Q 020510           42 ALNSALDEEMSA-DPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKP-VVEFMTFN  118 (325)
Q Consensus        42 a~~~~L~~l~~~-d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~-G~~p-~v~~~~~~  118 (325)
                      ..++.|.+.+++ .-+.|+..+  +.  ....+.+.+.+ .+.=|++- ...|+++.-+|-|.|+. |... .+.|+.+ 
T Consensus         9 ~~a~~lv~~L~~~GV~~vFg~P--G~--~~~~l~dal~~-~~~i~~i~-~~hE~~Aa~~AdGyAr~tG~pgv~~~TsGp-   81 (556)
T 3hww_A            9 RWAAVILEALTRHGVRHICIAP--GS--RSTLLTLAAAE-NSAFIHHT-HFDERGLGHLALGLAKVSKQPVAVIVTSGT-   81 (556)
T ss_dssp             HHHHHHHHHHHTTTCCEEEECC--CT--TSHHHHHHHHH-CTTCEEEE-CSCHHHHHHHHHHHHHHHCSCEEEEECSSH-
T ss_pred             HHHHHHHHHHHHCCCCEEEEcC--CC--CcHHHHHHHhh-CCCceEEE-ecCCcHHHHHHHHHHHhhCCCEEEEECCCc-
Confidence            345566655543 455566554  21  11223344433 21126665 47899999999999987 6433 3335433 


Q ss_pred             HHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCC--CCCCCCcchHH--HHHHhcCCCcEEEe--eCC---HHHHHH
Q 020510          119 FSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGAQHSHCY--AAWYASVPGLKVLS--PYS---SEDARG  189 (325)
Q Consensus       119 f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~G~tHs~~~--~a~~~~iP~~~V~~--P~d---~~e~~~  189 (325)
                      ...-++--|-+  |+.       .++|++++..+-..  .+.|. | |..  ..+++.+-....-.  |.+   ++++..
T Consensus        82 G~~N~~~gia~--A~~-------d~vPll~itG~~~~~~~g~~~-~-Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~i~~  150 (556)
T 3hww_A           82 AVANLYPALIE--AGL-------TGEKLILLTADRPPELIDCGA-N-QAIRQPGMFASHPTHSISLPRPTQDIPARWLVS  150 (556)
T ss_dssp             HHHTTHHHHHH--HHH-------HCCCEEEEEEECCGGGSSSSC-T-TCCCCTTTTTTCSSEEEECCCCCTTSCHHHHHH
T ss_pred             HHHhhhHHHHH--HHH-------hCCCeEEEeCCCCHHHhccCC-C-ccccHHHHHhhheeEEEecCCCcccccHHHHHH
Confidence            33334444433  332       58998887643222  22232 3 322  37888876554443  332   356888


Q ss_pred             HHHHhHhC--CCcEEEEeCc
Q 020510          190 LLKAAIRD--PDPVVFLENE  207 (325)
Q Consensus       190 ~l~~a~~~--~~Pv~ir~~~  207 (325)
                      +++.|+..  ++||+|-.+.
T Consensus       151 ~i~~A~~~~r~GPV~i~iP~  170 (556)
T 3hww_A          151 TIDHALGTLHAGGVHINCPF  170 (556)
T ss_dssp             HHHHHHHSCCSSCEEEEEEC
T ss_pred             HHHHHHhcCCCCCEEEeCCc
Confidence            89998874  5899997664

>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*

Probab=85.78  E-value=3.6  Score=41.79  Aligned_cols=149  Identities=14%  Similarity=0.122  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHhc-CCcEEEEecCCCCccCccccchhHHHHhCCCceeechh--hHHHHHHHHHHHhccC-CeeEEeccc
Q 020510           41 EALNSALDEEMSA-DPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMT  116 (325)
Q Consensus        41 ~a~~~~L~~l~~~-d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GI--aE~~~vg~A~GlA~~G-~~p~v~~~~  116 (325)
                      ..+.+.|.+.+.. +++++ ++.|.+... .+.  ..+..-..|.+|+..|.  +=-..+++|.|+|++. -++++++. 
T Consensus       464 ~~v~~~L~~~l~~~~~~~i-v~~~vg~~~-~~~--~~~~~~~~p~~~~~sg~~G~mG~~lpaAiGaalA~p~~~Vv~i~-  538 (677)
T 1t9b_A          464 QTVIKKLSKVANDTGRHVI-VTTGVGQHQ-MWA--AQHWTWRNPHTFITSGGLGTMGYGLPAAIGAQVAKPESLVIDID-  538 (677)
T ss_dssp             HHHHHHHHHHHHTTCSCEE-EEECSSHHH-HHH--HHHSCCCSTTCEECCCSSCCTTCHHHHHHHHHHHCTTSEEEEEE-
T ss_pred             HHHHHHHHHHhhcCCCCEE-EEeCCchHH-HHH--HHhcccCCCCeEEeCCCcchhhchHHHHHHHHHhCCCCeEEEEE-
Confidence            3455667666654 33444 445654211 110  11112112678888654  1122577888887663 34555454 


Q ss_pred             ccH-HHHHHHHHHHHHhhccccCCCCccCCEEEE--eCCCCCC----------C--CCCC-cchHHHHHHhcCCCcEEEe
Q 020510          117 FNF-SMQAIDHIINSAAKSNYMSSGQISVPIVFR--GPNGAAA----------G--VGAQ-HSHCYAAWYASVPGLKVLS  180 (325)
Q Consensus       117 ~~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~--~~~G~~~----------g--~G~t-Hs~~~~a~~~~iP~~~V~~  180 (325)
                      .+. ++..+..+.+ ++.        .++|++++  ..++...          .  .+.. +.-.+..+...+ |+..+.
T Consensus       539 GDGsf~~~~~eL~t-a~~--------~~l~v~ivV~NN~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~  608 (677)
T 1t9b_A          539 GDASFNMTLTELSS-AVQ--------AGTPVKILILNNEEQGMVTQWQSLFYEHRYSHTHQLNPDFIKLAEAM-GLKGLR  608 (677)
T ss_dssp             EHHHHHHHGGGHHH-HHH--------HTCCCEEEEEECSSCHHHHHHHHHHSTTCCCSCCCCCCCHHHHHHHT-TCEEEE
T ss_pred             eehHHhccHHHHHH-HHH--------hCCCeEEEEEeCCCchhhhhhhhhhcCCCcccCcCCCCCHHHHHHHc-CCeEEE
Confidence            443 2233444433 333        35665443  3333210          1  1111 112344666666 777788


Q ss_pred             eCCHHHHHHHHHHhHhCCCcEEEE
Q 020510          181 PYSSEDARGLLKAAIRDPDPVVFL  204 (325)
Q Consensus       181 P~d~~e~~~~l~~a~~~~~Pv~ir  204 (325)
                      ..+.+|+...++.+++.++|++|-
T Consensus       609 v~~~~el~~al~~a~~~~gp~lIe  632 (677)
T 1t9b_A          609 VKKQEELDAKLKEFVSTKGPVLLE  632 (677)
T ss_dssp             ECSHHHHHHHHHHHHHCSSCEEEE
T ss_pred             ECCHHHHHHHHHHHHHCCCcEEEE
Confidence            899999999999999988999884

>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9

Probab=85.30  E-value=6.1  Score=38.70  Aligned_cols=153  Identities=10%  Similarity=0.040  Sum_probs=82.0

Q ss_pred             cccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEe-c
Q 020510           36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVE-F  114 (325)
Q Consensus        36 ~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~-~  114 (325)
                      .++..+++.+.|.+   .+-+.++..+...    ...+.+.+.+ .+.=|++. ...|+++.-+|.|.|+....+++. |
T Consensus         4 ~~~~a~~l~~~L~~---~GV~~vfg~PG~~----~~~l~~al~~-~~~i~~i~-~~~E~~A~~~A~Gyar~tg~~v~~~t   74 (552)
T 1ovm_A            4 PYCVADYLLDRLTD---CGADHLFGVPGDY----NLQFLDHVID-SPDICWVG-CANELNASYAADGYARCKGFAALLTT   74 (552)
T ss_dssp             CCBHHHHHHHHHHH---TTCCEEEECCCGG----GHHHHHHHHH-CSSCEEEE-CSSHHHHHHHHHHHHHHHSCEEEEEE
T ss_pred             ccCHHHHHHHHHHH---cCCCEEEECCChh----HHHHHHHHhc-CCCceEEe-eCcHHHHHHHHHHHHHhhCCcEEEEc
Confidence            35566677666654   4566666654211    1122333433 21125555 599999999999999873344333 4


Q ss_pred             ccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCC--C--C------CCC-CcchHHHHHHhcCCCcEEEeeCC
Q 020510          115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--A--G------VGA-QHSHCYAAWYASVPGLKVLSPYS  183 (325)
Q Consensus       115 ~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~--g------~G~-tHs~~~~a~~~~iP~~~V~~P~d  183 (325)
                      ..+ ...-++--+.+  |+.       .++|++++..+-..  .  +      .|. .+ |....+++.+-......+.+
T Consensus        75 sGp-G~~N~~~gv~~--A~~-------~~~Pll~itg~~p~~~~~~~~~~~~~~g~~~~-q~~~~~~~~~tk~~~~v~~~  143 (552)
T 1ovm_A           75 FGV-GELSAMNGIAG--SYA-------EHVPVLHIVGAPGTAAQQRGELLHHTLGDGEF-RHFYHMSEPITVAQAVLTEQ  143 (552)
T ss_dssp             TTH-HHHHTHHHHHH--HHH-------TTCCEEEEEEECCHHHHHHTCCCTTSCSSSCC-SHHHHHTGGGCSEEEECCTT
T ss_pred             cCC-cHHHHHHHHHH--Hhh-------hcCCEEEEECCCCHHHHhcccccccccCCCcH-HHHHHHHHhheeEEEEEccc
Confidence            333 33334444433  222       58998887543221  0  1      111 12 33357888887655554430


Q ss_pred             --HHHHHHHHHHhHhCCCcEEEEeCcc
Q 020510          184 --SEDARGLLKAAIRDPDPVVFLENEL  208 (325)
Q Consensus       184 --~~e~~~~l~~a~~~~~Pv~ir~~~~  208 (325)
                        +..+..+++.|...++||+|-.+..
T Consensus       144 ~~~~~i~~A~~~a~~~~GPV~l~iP~d  170 (552)
T 1ovm_A          144 NACYEIDRVLTTMLRERRPGYLMLPAD  170 (552)
T ss_dssp             THHHHHHHHHHHHHHHTCCEEEEEEHH
T ss_pred             cHHHHHHHHHHHHHhCCCCEEEEeehh
Confidence              2333444444444469999986654

>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*

Probab=84.98  E-value=4.6  Score=39.85  Aligned_cols=150  Identities=13%  Similarity=0.070  Sum_probs=82.0

Q ss_pred             ccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeeE-Eec
Q 020510           37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPV-VEF  114 (325)
Q Consensus        37 ~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~-G~~p~-v~~  114 (325)
                      ++..+++.+.|.+   .+-+.++..+...    ...+.+.+.+ .+.=|++. ...|+++..+|.|.|+. | ..+ +.|
T Consensus        25 ~~~a~~l~~~L~~---~GV~~vfg~PG~~----~~~l~~al~~-~~~i~~i~-~~~E~~A~~~A~GyAr~tG-~~v~~~t   94 (570)
T 2vbf_A           25 YTVGDYLLDRLHE---LGIEEIFGVPGDY----NLQFLDQIIS-REDMKWIG-NANELNASYMADGYARTKK-AAAFLTT   94 (570)
T ss_dssp             CBHHHHHHHHHHH---TTCCEEEECCCGG----GHHHHHHHHH-CSSCEEEE-CSSHHHHHHHHHHHHHHHS-CEEEEEE
T ss_pred             CCHHHHHHHHHHH---cCCCEEEECCCcc----hHHHHHHHhc-CCCCeEEC-cCcHHHHHHHHHHHHHHhC-CeEEEEc
Confidence            5667777766654   4556666654211    1122233433 21125665 49999999999999965 7 433 334


Q ss_pred             ccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCC--CCCC-CCcc-------hHHHHHHhcCCCcEEEeeCCH
Q 020510          115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVG-AQHS-------HCYAAWYASVPGLKVLSPYSS  184 (325)
Q Consensus       115 ~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~G-~tHs-------~~~~a~~~~iP~~~V~~P~d~  184 (325)
                      ..+ ...-++--|.+  |+.       .++|++++..+-..  .+.+ ..|+       +....+++.+.-.....+ + 
T Consensus        95 sGp-G~~N~~~gi~~--A~~-------~~vPlv~itg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~-~-  162 (570)
T 2vbf_A           95 FGV-GELSAINGLAG--SYA-------ENLPVVEIVGSPTSKVQNDGKFVHHTLADGDFKHFMKMHEPVTAARTLLT-A-  162 (570)
T ss_dssp             TTH-HHHHHHHHHHH--HHH-------TTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCCHHHHHTGGGCSEEEECC-T-
T ss_pred             CCC-CHHHHHHHHHH--Hhh-------hCCCEEEEeCCCCHHHhhccccceeeccccchHHHHHHhhhhEEEEEEEC-c-
Confidence            333 33334555543  232       57998887543221  1111 1121       123478888875544443 4 


Q ss_pred             HHHHHHHHHhHh----CCCcEEEEeCcc
Q 020510          185 EDARGLLKAAIR----DPDPVVFLENEL  208 (325)
Q Consensus       185 ~e~~~~l~~a~~----~~~Pv~ir~~~~  208 (325)
                      +++...++.+++    .++||+|-.+..
T Consensus       163 ~~~~~~l~~A~~~A~~~~GPV~l~iP~d  190 (570)
T 2vbf_A          163 ENATYEIDRVLSQLLKERKPVYINLPVD  190 (570)
T ss_dssp             TTHHHHHHHHHHHHHHHCCCEEEEEEHH
T ss_pred             ccHHHHHHHHHHHHhhCCCCEEEEcchh
Confidence            555555555544    469999986654

>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}

Probab=82.30  E-value=7.6  Score=38.62  Aligned_cols=148  Identities=13%  Similarity=0.018  Sum_probs=77.2

Q ss_pred             HHHHHHHHHh-cCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCee--EEecccccH
Q 020510           43 LNSALDEEMS-ADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKP--VVEFMTFNF  119 (325)
Q Consensus        43 ~~~~L~~l~~-~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p--~v~~~~~~f  119 (325)
                      .++.|.+.++ .+-+.|+..+-..    ...+.+.+.+ .+.=|++.+ ..|+++.-+|.|.|+..-+|  .+.|+.+ .
T Consensus        33 ~a~~lv~~L~~~GV~~vFg~PG~~----~~~l~dal~~-~~~i~~i~~-~hE~~Aa~aA~GyAr~tgkpgv~~~TsGp-G  105 (604)
T 2x7j_A           33 YIGSFIDEFALSGITDAVVCPGSR----STPLAVLCAA-HPDISVHVQ-IDERSAGFFALGLAKAKQRPVLLICTSGT-A  105 (604)
T ss_dssp             HHHHHHHHHHHHTCCEEEECCCST----THHHHHHHHH-CTTCEEEEC-SSHHHHHHHHHHHHHHHTSCEEEEECSSH-H
T ss_pred             HHHHHHHHHHHcCCCEEEECcCcc----cHHHHHHHHh-CCCceEEEe-cChHHHHHHHHHHHHhhCCCEEEEECChh-H
Confidence            4444444443 3566666654211    1223344433 211367775 99999999999999874343  3345433 3


Q ss_pred             HHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCC--CCCCCCcchH-H-HHHHhcCCCcEEE--eeCC--------HH
Q 020510          120 SMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGAQHSHC-Y-AAWYASVPGLKVL--SPYS--------SE  185 (325)
Q Consensus       120 ~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~G~tHs~~-~-~a~~~~iP~~~V~--~P~d--------~~  185 (325)
                      ..-++--|.+  |+.       .++|++++..+-..  .+.|. + |. + ..+++.+-.....  .|.+        +.
T Consensus       106 ~~N~~~gia~--A~~-------~~vPlv~ItG~~~~~~~g~~~-~-Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~  174 (604)
T 2x7j_A          106 AANFYPAVVE--AHY-------SRVPIIVLTADRPHELREVGA-P-QAINQHFLFGNFVKFFTDSALPEESPQMLRYIRT  174 (604)
T ss_dssp             HHTTHHHHHH--HHH-------HTCCEEEEEEECCGGGSSSCC-T-TCCCCTTTTGGGSSCEEECCCCCCSHHHHHHHHH
T ss_pred             HHHHHHHHHH--Hhh-------cCCCEEEEeCCCCHHHhCCCC-C-CcCcHHHHhhhheeeeeecCCCcccchhHHHHHH
Confidence            3333444433  222       57998887643222  12222 2 22 2 3677777544333  3443        22


Q ss_pred             HHHHHHHHhHh-CCCcEEEEeCcc
Q 020510          186 DARGLLKAAIR-DPDPVVFLENEL  208 (325)
Q Consensus       186 e~~~~l~~a~~-~~~Pv~ir~~~~  208 (325)
                      .+.++++.|.. .++||+|..+..
T Consensus       175 ~i~~A~~~A~~~~~GPV~l~iP~d  198 (604)
T 2x7j_A          175 LASRAAGEAQKRPMGPVHVNVPLR  198 (604)
T ss_dssp             HHHHHHHHHHSSSCCEEEEEEECC
T ss_pred             HHHHHHHHhhCCCCCcEEEEcccC
Confidence            33344444443 468999986644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	325
d2ozlb1	192	c.36.1.7 (B:0-191) E1-beta subunit of pyruvate deh	1e-62
d1qs0b1	204	c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase	2e-60
d1w85b1	192	c.36.1.7 (B:1-192) Pyruvate dehydrogenase E1-beta,	2e-58
d1ik6a1	191	c.36.1.7 (A:1-191) E1-beta subunit of pyruvate deh	7e-52
d2bfdb1	203	c.36.1.7 (B:2-204) Branched-chain alpha-keto acid	7e-51
d1umdb1	186	c.36.1.7 (B:2-187) Branched-chain alpha-keto acid	1e-45
d1qs0b2	134	c.48.1.2 (B:206-339) 2-oxoisovalerate dehydrogenas	4e-14
d2ozlb2	138	c.48.1.2 (B:192-329) E1-beta subunit of pyruvate d	6e-14
d1w85b2	132	c.48.1.2 (B:193-324) Pyruvate dehydrogenase E1-bet	2e-13
d1umdb2	137	c.48.1.2 (B:188-324) Branched-chain alpha-keto aci	3e-13
d2bfdb2	138	c.48.1.2 (B:205-342) Branched-chain alpha-keto aci	5e-13
d1ik6a2	135	c.48.1.2 (A:192-326) E1-beta subunit of pyruvate d	5e-12
d2c42a3	157	c.48.1.3 (A:259-415) Pyruvate-ferredoxin oxidoredu	2e-07
d2r8oa1	195	c.36.1.6 (A:333-527) Transketolase (TK), Pyr modul	0.001

>d2ozlb1 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: E1-beta subunit of pyruvate dehydrogenase, Pyr module
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  195 bits (496), Expect = 1e-62
 Identities = 122/191 (63%), Positives = 150/191 (78%)

Query: 35  KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEA 94
            Q+ VR+A+N  +DEE+  D KVFL+GEEV +Y GAYK+S+GL +KYG +R++DTPI+E 
Sbjct: 2   LQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEM 61

Query: 95  GFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGA 154
           GF GI VGAA  GL+P+ EFMTFNFSMQAID +INSAAK+ YMS G   VPIVFRGPNGA
Sbjct: 62  GFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGA 121

Query: 155 AAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESF 214
           +AGV AQHS C+AAWY   PGLKV+SP++SEDA+GL+K+AIRD +PVV LENEL+YG  F
Sbjct: 122 SAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPF 181

Query: 215 PVSAEVLDSSF 225
               E     F
Sbjct: 182 EFPPEAQSKDF 192

>d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B), Pyr module {Pseudomonas putida [TaxId: 303]} Length = 204

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: 2-oxoisovalerate dehydrogenase (E1B), Pyr module
species: Pseudomonas putida [TaxId: 303]

 Score =  190 bits (483), Expect = 2e-60
 Identities = 73/208 (35%), Positives = 106/208 (50%), Gaps = 6/208 (2%)

Query: 33  AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPIT 92
           A   M + +AL SA+D  +  D  V + G++VG + G ++ ++GL  KYG  RV D PI+
Sbjct: 1   ATTTMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPIS 60

Query: 93  EAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN 152
           E+G  G  VG   YGL+PVVE    ++   A D I++  A+  Y S+G+   P+  R P 
Sbjct: 61  ESGIVGTAVGMGAYGLRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPC 120

Query: 153 GAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGE 212
           G     G  HS    A +  V GL+ + P +  DA+GLL A+I   DPV+FLE + LY  
Sbjct: 121 GGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIASIECDDPVIFLEPKRLYNG 180

Query: 213 SFPVSAEVLDSSFCLPIGK--AKIEREG 238
            F    +        P  K       +G
Sbjct: 181 PF----DGHHDRPVTPWSKHPHSAVPDG 204

>d1w85b1 c.36.1.7 (B:1-192) Pyruvate dehydrogenase E1-beta, PdhB, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: Pyruvate dehydrogenase E1-beta, PdhB, N-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  184 bits (469), Expect = 2e-58
 Identities = 73/194 (37%), Positives = 106/194 (54%), Gaps = 3/194 (1%)

Query: 36  QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAG 95
           QM + +A+  AL  E+  DP V + GE+VG   G ++ ++GL  ++G +RV DTP+ E+G
Sbjct: 2   QMTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESG 61

Query: 96  FTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA 155
             G+ +G A  G +PV E   F F  + +D I    A+  Y + G+  +PI  R P G  
Sbjct: 62  IGGLAIGLALQGFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPFGGG 121

Query: 156 AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFP 215
                 HS       A  PGLKV+ P +  DA+GLL +AIRD DPV+FLE+  LY     
Sbjct: 122 VHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAIRDNDPVIFLEHLKLYRS--- 178

Query: 216 VSAEVLDSSFCLPI 229
              EV +  + +PI
Sbjct: 179 FRQEVPEGEYTIPI 192

>d1ik6a1 c.36.1.7 (A:1-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 191

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: E1-beta subunit of pyruvate dehydrogenase, Pyr module
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score =  167 bits (425), Expect = 7e-52
 Identities = 77/180 (42%), Positives = 108/180 (60%)

Query: 31  SSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTP 90
           +  V    + +A+N AL EEM  D +V ++GE+VG+  G + +++GL E++GPERV+DTP
Sbjct: 2   AGVVMMANMAKAINMALHEEMERDERVVVLGEDVGKKGGVFLVTEGLYERFGPERVIDTP 61

Query: 91  ITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG 150
           + E G  G  +G A  GLKPV E    +F     D ++N  AK  Y S G    P+V R 
Sbjct: 62  LNEGGILGFAMGMAMAGLKPVAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRT 121

Query: 151 PNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLY 210
           P G+    G  HS+   A +   PGL V+ P +  +A+GLLKAAIR  DPVVFLE ++LY
Sbjct: 122 PVGSGTRGGLYHSNSPEAIFVHTPGLVVVMPSTPYNAKGLLKAAIRGDDPVVFLEPKILY 181

>d2bfdb1 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} Length = 203

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: Branched-chain alpha-keto acid dehydrogenase, Pyr module
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  165 bits (419), Expect = 7e-51
 Identities = 63/191 (32%), Positives = 99/191 (51%), Gaps = 5/191 (2%)

Query: 30  YSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDT 89
                ++M + +++ SALD  ++ DP   + GE+V  + G ++ + GL +KYG +RV +T
Sbjct: 13  EYGQTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNT 71

Query: 90  PITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVF- 148
           P+ E G  G G+G A  G   + E    ++   A D I+N AAK  Y S    +   +  
Sbjct: 72  PLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTI 131

Query: 149 RGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENEL 208
           R P G        HS    A++A  PG+KV+ P S   A+GLL + I D +P +F E ++
Sbjct: 132 RSPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKI 191

Query: 209 LY---GESFPV 216
           LY    E  P+
Sbjct: 192 LYRAAAEEVPI 202

>d1umdb1 c.36.1.7 (B:2-187) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Thermus thermophilus [TaxId: 274]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: Branched-chain alpha-keto acid dehydrogenase, Pyr module
species: Thermus thermophilus [TaxId: 274]

 Score =  151 bits (382), Expect = 1e-45
 Identities = 80/176 (45%), Positives = 114/176 (64%)

Query: 36  QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAG 95
            M + +ALN ALDEEM+ DP+V ++GE+VG+  G + +++GLL+KYGP+RV+DTP++EA 
Sbjct: 2   LMTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAA 61

Query: 96  FTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA 155
             G  +G A +GL+PV E    ++     D +++  AK  Y S GQ + P+V R P+G  
Sbjct: 62  IVGAALGMAAHGLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPSGGG 121

Query: 156 AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYG 211
              G  HS    A +    GLKV++  +  DA+GLLKAAIRD DPVVFLE + LY 
Sbjct: 122 VRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIRDEDPVVFLEPKRLYR 177

>d1qs0b2 c.48.1.2 (B:206-339) 2-oxoisovalerate dehydrogenase E1b, C-domain {Pseudomonas putida [TaxId: 303]} Length = 134

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
domain: 2-oxoisovalerate dehydrogenase E1b, C-domain
species: Pseudomonas putida [TaxId: 303]

 Score = 66.3 bits (161), Expect = 4e-14
 Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 3/85 (3%)

Query: 225 FCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTIN 284
           + +P+ KA I R G DV++  +   V ++        + G+ AEVI+LRS+ PLD  TI 
Sbjct: 2   YTVPLDKAAITRPGNDVSVLTYGTTVYVAQ---VAAEESGVDAEVIDLRSLWPLDLDTIV 58

Query: 285 ASVRKTNRLVTVEEGFPQHGVGAEI 309
            SV+KT R V V E     G GAE+
Sbjct: 59  ESVKKTGRCVVVHEATRTCGFGAEL 83

>d2ozlb2 c.48.1.2 (B:192-329) E1-beta subunit of pyruvate dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
domain: E1-beta subunit of pyruvate dehydrogenase, C-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (160), Expect = 6e-14
 Identities = 52/83 (62%), Positives = 66/83 (79%)

Query: 227 LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINAS 286
           +PIGKAKIER+G  +T+ + S+ VG  L+AA +L+KEG+  EVIN+R+IRP+D  TI AS
Sbjct: 2   IPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDMETIEAS 61

Query: 287 VRKTNRLVTVEEGFPQHGVGAEI 309
           V KTN LVTVE G+PQ GVGAEI
Sbjct: 62  VMKTNHLVTVEGGWPQFGVGAEI 84

>d1w85b2 c.48.1.2 (B:193-324) Pyruvate dehydrogenase E1-beta, PdhB, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 132

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
domain: Pyruvate dehydrogenase E1-beta, PdhB, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 64.0 bits (155), Expect = 2e-13
 Identities = 44/80 (55%), Positives = 57/80 (71%)

Query: 230 GKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRK 289
           GKA I+REGKD+TI A+  +V  SLKAA  L KEGISAEV++LR+++PLD  TI  SV K
Sbjct: 1   GKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRTVQPLDIETIIGSVEK 60

Query: 290 TNRLVTVEEGFPQHGVGAEI 309
           T R + V+E   Q G+ A +
Sbjct: 61  TGRAIVVQEAQRQAGIAANV 80

>d1umdb2 c.48.1.2 (B:188-324) Branched-chain alpha-keto acid dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 137

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
domain: Branched-chain alpha-keto acid dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 63.6 bits (154), Expect = 3e-13
 Identities = 35/85 (41%), Positives = 53/85 (62%)

Query: 225 FCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTIN 284
           + LPIGKA + REGKD+T+  +  ++   L+AA  LAK G+SAEV++LR++ P D   + 
Sbjct: 2   YTLPIGKAALRREGKDLTLICYGTVMPEVLQAAAELAKAGVSAEVLDLRTLMPWDYEAVM 61

Query: 285 ASVRKTNRLVTVEEGFPQHGVGAEI 309
            SV KT R+V V +        +E+
Sbjct: 62  NSVAKTGRVVLVSDAPRHASFVSEV 86

>d2bfdb2 c.48.1.2 (B:205-342) Branched-chain alpha-keto acid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
domain: Branched-chain alpha-keto acid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.2 bits (153), Expect = 5e-13
 Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 1/86 (1%)

Query: 225 FCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAE-ILAKEGISAEVINLRSIRPLDRSTI 283
           + +P+ +A++ +EG DVT+ A+   V +  + A     K G+S EVI+LR+I P D  TI
Sbjct: 2   YNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAKEKLGVSCEVIDLRTIIPWDVDTI 61

Query: 284 NASVRKTNRLVTVEEGFPQHGVGAEI 309
             SV KT RL+   E     G  +EI
Sbjct: 62  CKSVIKTGRLLISHEAPLTGGFASEI 87

>d1ik6a2 c.48.1.2 (A:192-326) E1-beta subunit of pyruvate dehydrogenase, C-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 135

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
domain: E1-beta subunit of pyruvate dehydrogenase, C-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 60.2 bits (145), Expect = 5e-12
 Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 3/82 (3%)

Query: 225 FCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTIN 284
           + + IGKA++ REG DVT+  +  +V  +L+AAE +       EV++L+++ PLD  T+ 
Sbjct: 2   YVVEIGKARVAREGDDVTLVTYGAVVHKALEAAERVKASV---EVVDLQTLNPLDFDTVL 58

Query: 285 ASVRKTNRLVTVEEGFPQHGVG 306
            SV KT RL+   +     G+G
Sbjct: 59  KSVSKTGRLIIAHDSPKTGGLG 80

>d2c42a3 c.48.1.3 (A:259-415) Pyruvate-ferredoxin oxidoreductase, PFOR, domain II {Desulfovibrio africanus [TaxId: 873]} Length = 157

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Pyruvate-ferredoxin oxidoreductase, PFOR, domain II
domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domain II
species: Desulfovibrio africanus [TaxId: 873]

 Score = 48.0 bits (114), Expect = 2e-07
 Identities = 12/70 (17%), Positives = 27/70 (38%)

Query: 240 DVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEG 299
           +  I +         +    LA +G    +I +R  RP       A++  + +++TV + 
Sbjct: 12  ERVIVSMGSSCETIEEVINHLAAKGEKIGLIKVRLYRPFVSEAFFAALPASAKVITVLDR 71

Query: 300 FPQHGVGAEI 309
             + G   + 
Sbjct: 72  TKEPGAPGDP 81

>d2r8oa1 c.36.1.6 (A:333-527) Transketolase (TK), Pyr module {Escherichia coli [TaxId: 562]} Length = 195

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like Pyr module
domain: Transketolase (TK), Pyr module
species: Escherichia coli [TaxId: 562]

 Score = 37.1 bits (85), Expect = 0.001
 Identities = 20/166 (12%), Positives = 38/166 (22%), Gaps = 9/166 (5%)

Query: 40  REALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGI 99
           R+A  +A++      P+      ++             + +      +   + E G T I
Sbjct: 26  RKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDAAGNYIHYGVREFGMTAI 85

Query: 100 GVGA-AYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGV 158
             G   + G  P                 +            Q  V +      G     
Sbjct: 86  ANGISLHGGFLPYTSTFLMFVEYARNAVRMA-------ALMKQRQVMVYTHDSIGLGEDG 138

Query: 159 GAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPD-PVVF 203
                    A     P +    P    ++    K  +   D P   
Sbjct: 139 PTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKYGVERQDGPTAL 184

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	325
d1qs0b1	204	2-oxoisovalerate dehydrogenase (E1B), Pyr module {	100.0
d2ozlb1	192	E1-beta subunit of pyruvate dehydrogenase, Pyr mod	100.0
d1w85b1	192	Pyruvate dehydrogenase E1-beta, PdhB, N-terminal d	100.0
d1umdb1	186	Branched-chain alpha-keto acid dehydrogenase, Pyr	100.0
d1ik6a1	191	E1-beta subunit of pyruvate dehydrogenase, Pyr mod	100.0
d2bfdb1	203	Branched-chain alpha-keto acid dehydrogenase, Pyr	100.0
d1itza2	192	Transketolase (TK), Pyr module {Maize (Zea mays) [	100.0
d1r9ja1	190	Transketolase (TK), Pyr module {Leishmania mexican	100.0
d1gpua2	197	Transketolase (TK), Pyr module {Baker's yeast (Sac	100.0
d2r8oa1	195	Transketolase (TK), Pyr module {Escherichia coli [	100.0
d1umdb2	137	Branched-chain alpha-keto acid dehydrogenase {Ther	99.91
d2bfdb2	138	Branched-chain alpha-keto acid dehydrogenase {Huma	99.9
d2ozlb2	138	E1-beta subunit of pyruvate dehydrogenase, C-domai	99.88
d1w85b2	132	Pyruvate dehydrogenase E1-beta, PdhB, C-terminal d	99.87
d1ik6a2	135	E1-beta subunit of pyruvate dehydrogenase, C-domai	99.87
d1qs0b2	134	2-oxoisovalerate dehydrogenase E1b, C-domain {Pseu	99.86
d2ieaa1	230	Pyruvate dehydrogenase E1 component, Pyr module {E	99.5
d2c42a3	157	Pyruvate-ferredoxin oxidoreductase, PFOR, domain I	99.41
d1gpua3	146	Transketolase (TK), C-domain {Baker's yeast (Sacch	99.29
d2r8oa3	136	Transketolase (TK), C-domain {Escherichia coli [Ta	99.22
d1itza3	136	Transketolase (TK), C-domain {Maize (Zea mays) [Ta	98.69
d1r9ja3	143	Transketolase (TK), C-domain {Leishmania mexicana	98.68
d2c42a1	257	Pyruvate-ferredoxin oxidoreductase, PFOR, domain I	98.23
d2ieaa3	186	Pyruvate dehydrogenase E1 component, C-domain {Esc	97.14
d2djia2	184	Pyruvate oxidase {Aerococcus viridans [TaxId: 1377	96.41
d2ez9a2	174	Pyruvate oxidase {Lactobacillus plantarum [TaxId:	96.27
d1q6za2	180	Benzoylformate decarboxylase {Pseudomonas putida [	96.05
d1t9ba2	175	Acetohydroxyacid synthase catalytic subunit {Baker	95.9
d2ji7a3	183	Oxalyl-CoA decarboxylase {Oxalobacter formigenes [	95.78
d1pvda2	180	Pyruvate decarboxylase {Baker's yeast (Saccharomyc	95.75
d2ihta2	186	Carboxyethylarginine synthase {Streptomyces clavul	95.65
d1zpda2	186	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	94.94
d1ybha2	195	Acetohydroxyacid synthase catalytic subunit {Thale	94.92
d1ozha2	181	Catabolic acetolactate synthase {Klebsiella pneumo	94.72
d1ovma2	178	Indole-3-pyruvate decarboxylase {Enterobacter cloa	94.03
d2ji7a2	188	Oxalyl-CoA decarboxylase {Oxalobacter formigenes [	93.0
d2ihta3	198	Carboxyethylarginine synthase {Streptomyces clavul	91.69
d1q6za3	183	Benzoylformate decarboxylase {Pseudomonas putida [	91.21
d1t9ba3	227	Acetohydroxyacid synthase catalytic subunit {Baker	90.32
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	84.07
d1vmea1	148	ROO-like flavoprotein TM0755, C-terminal domain {T	83.55
d1ozha3	192	Catabolic acetolactate synthase {Klebsiella pneumo	82.2
d1e5da1	152	Rubredoxin oxygen:oxidoreductase (ROO), C-terminal	80.63

>d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B), Pyr module {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: 2-oxoisovalerate dehydrogenase (E1B), Pyr module
species: Pseudomonas putida [TaxId: 303]

Probab=100.00  E-value=5.1e-47  Score=332.66  Aligned_cols=200  Identities=36%  Similarity=0.610  Sum_probs=184.8

Q ss_pred             ccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEec
Q 020510           35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF  114 (325)
Q Consensus        35 ~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~  114 (325)
                      ..+++++|++++|.+++++|++++++++|++..+|.|+.+.+|.++|||+|++|+||+|++++|+|+|||++|+||++++
T Consensus         3 ~~m~~~~ai~~al~e~m~~d~~v~~~Gedv~~~Gg~f~~t~gl~~kfgp~Rv~dtpIaE~~~vG~A~GlA~~G~rPvve~   82 (204)
T d1qs0b1           3 TTMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTAVGMGAYGLRPVVEI   82 (204)
T ss_dssp             EECCHHHHHHHHHHHHHHHCTTEEEEETTCSSSCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred             ceehHHHHHHHHHHHHHhhCCCEEEEecCCCccCCccccchHHHHHHhhhheecccccceeehhHHHHHhcCCCcEEEEE
Confidence            57899999999999999999999999999998889999999999999999999999999999999999999999999999


Q ss_pred             ccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCcchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHh
Q 020510          115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAA  194 (325)
Q Consensus       115 ~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a  194 (325)
                      ++++|+.+++|||+|++|+++||++++.++|++++.+.|.+.+.|++|||+++++|+++||++|++|+|+.|++.++++|
T Consensus        83 ~~~df~~~a~dqi~n~~ak~~~~~~~~~~~p~vir~~~g~~~~~g~~Hs~~~~s~~~~iPgl~Vv~Ps~~~da~~ll~~a  162 (204)
T d1qs0b1          83 QFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIAS  162 (204)
T ss_dssp             SCGGGCGGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECCSSSCCSSSSCCCHHHHTTSTTCEEECCCSHHHHHHHHHHH
T ss_pred             EecchhhHHHHHHHHHHHHhhcccccCcccceEEEcCcccccCcccccccCHHHHHhcCCCcEEEeeCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999887776778999999999999999999999999999999999999


Q ss_pred             HhCCCcEEEEeCccccCcccCccccccCCCccccCCc--eEEeeeC
Q 020510          195 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGK--AKIEREG  238 (325)
Q Consensus       195 ~~~~~Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~~gk--~~vl~~G  238 (325)
                      ++.++||++++++.+|+.+.    +++.+.+..++|+  +.++++|
T Consensus       163 ~~~~~Pvi~~e~k~ly~~~~----~~~~~~~~~p~~~~~~~~v~~G  204 (204)
T d1qs0b1         163 IECDDPVIFLEPKRLYNGPF----DGHHDRPVTPWSKHPHSAVPDG  204 (204)
T ss_dssp             HHSSSCEEEEEEGGGSSSCC----CSCSSSCCCCSTTSTTCEEESS
T ss_pred             HhCCCcEEEEeeHHHhCCCc----cCCCccCCCCcccCccccCCCC
Confidence            99999999999999997643    3344555566776  6777765

>d2ozlb1 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: E1-beta subunit of pyruvate dehydrogenase, Pyr module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-44  Score=314.11  Aligned_cols=179  Identities=66%  Similarity=1.136  Sum_probs=172.7

Q ss_pred             ccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEec
Q 020510           35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF  114 (325)
Q Consensus        35 ~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~  114 (325)
                      .++++++|+.++|.+.|++|++++++++|++..+|.|+.+.+|.++|||+|++|+||+|++++|+|+|+|++|+||++++
T Consensus         2 ~~it~~eAi~~al~~~m~~d~~v~i~Gedv~~~gg~f~~t~gl~~~fg~~Rv~dtPisE~~~~G~a~G~A~~G~rPive~   81 (192)
T d2ozlb1           2 LQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEF   81 (192)
T ss_dssp             CEEEHHHHHHHHHHHHHHHCTTEEEEETTSSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             ceeeHHHHHHHHHHHHHhhCCCEEEEecCCCccCCccccccchhhhcccceEEecccchhHHHHHHHHHHhcCCceEEEE
Confidence            57899999999999999999999999999998899999999999999999999999999999999999999999999999


Q ss_pred             ccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCcchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHh
Q 020510          115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAA  194 (325)
Q Consensus       115 ~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a  194 (325)
                      ++.+|+++++|||+|++++++||+|++.++|++++.+.|...+.|++|||+++++|+++||++|++|++++|++.++++|
T Consensus        82 ~~~df~~~a~dqi~n~~ak~~~~~~g~~~~pvvir~~~g~~~g~g~~Hs~~~~~~~~~~PGl~Vv~Ps~p~da~gll~~A  161 (192)
T d2ozlb1          82 MTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSA  161 (192)
T ss_dssp             SSGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEECSCCSSCCGGGCCCCHHHHHTSTTCEEECCCSHHHHHHHHHHH
T ss_pred             EeccchhhhHHHHHhhhhhhhhhhCCcccceEEEEeccCCCCCcccccccchHHhhccCCceEEEecCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999987777788999999999999999999999999999999999999


Q ss_pred             HhCCCcEEEEeCccccCcc
Q 020510          195 IRDPDPVVFLENELLYGES  213 (325)
Q Consensus       195 ~~~~~Pv~ir~~~~l~~~~  213 (325)
                      ++.++||++.+++.+|+.+
T Consensus       162 i~~~~Pvi~~E~k~ly~~~  180 (192)
T d2ozlb1         162 IRDNNPVVVLENELMYGVP  180 (192)
T ss_dssp             HHSSSCEEEEECHHHHTCE
T ss_pred             HhCCCCEEEEEcHHHhCCC
Confidence            9999999999999998764

>d1w85b1 c.36.1.7 (B:1-192) Pyruvate dehydrogenase E1-beta, PdhB, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: Pyruvate dehydrogenase E1-beta, PdhB, N-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=5.3e-44  Score=309.13  Aligned_cols=191  Identities=38%  Similarity=0.694  Sum_probs=179.3

Q ss_pred             cccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEecc
Q 020510           36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM  115 (325)
Q Consensus        36 ~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~  115 (325)
                      ++++++|+.++|.+.|++|++++++++|++..+|.|+.+.+|.++|||+|++|+||+|++++|+|.|+|+.|+||+++.+
T Consensus         2 ~~t~~~Ai~~al~~~m~~d~~v~i~GedV~~~GGvf~~t~GL~~~fG~~Rv~dtPisE~~~~G~a~G~Al~G~rpIve~~   81 (192)
T d1w85b1           2 QMTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGIGGLAIGLALQGFRPVPEIQ   81 (192)
T ss_dssp             EECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEBCS
T ss_pred             ceeHHHHHHHHHHHHHhhCCCEEEEecCCCccCcccccchhhHhhhhhheeecccccccchHHHHHHHHhccCceEEEEE
Confidence            68899999999999999999999999999988999999999999999999999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCcchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhH
Q 020510          116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAI  195 (325)
Q Consensus       116 ~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~  195 (325)
                      +.+|+..++|||.|++++++||+|++.++|++++.+.|...+.|++|||+++++|.++||++|++|+++.|++.++++|+
T Consensus        82 ~~dF~~~a~dqi~n~aak~~~~sgg~~~~P~viR~~~G~g~~~g~~HSqs~e~~f~~~PGlkVv~Ps~p~Da~gll~~Ai  161 (192)
T d1w85b1          82 FFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPFGGGVHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAI  161 (192)
T ss_dssp             SGGGGGGTHHHHHTTGGGHHHHTTTSSCCCCEEEEEECSSSCCCTTSSCCCHHHHTTSTTCEEECCSSHHHHHHHHHHHH
T ss_pred             eccchhHHHHHHHHHHhhcchhcCCccccceEEEeccccccCCccccccCHHHHhhcCCCeeEEeeCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998877777789999999999999999999999999999999999999


Q ss_pred             hCCCcEEEEeCccccCcccCccccccCCCccccC
Q 020510          196 RDPDPVVFLENELLYGESFPVSAEVLDSSFCLPI  229 (325)
Q Consensus       196 ~~~~Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~~  229 (325)
                      ++++||++.+++.+|+..   ..++|+++|.+|+
T Consensus       162 ~~~~Pvi~~E~k~ly~~~---~~~vp~~~y~iPi  192 (192)
T d1w85b1         162 RDNDPVIFLEHLKLYRSF---RQEVPEGEYTIPI  192 (192)
T ss_dssp             HSSSCEEEEEETTTSSSC---CEECCSSCCCCCT
T ss_pred             hCCCCEEEEEcHHHhhcC---CCCCCCCCcCCCC
Confidence            999999999999998541   2566777776653

>d1umdb1 c.36.1.7 (B:2-187) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: Branched-chain alpha-keto acid dehydrogenase, Pyr module
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=6.6e-44  Score=309.97  Aligned_cols=177  Identities=45%  Similarity=0.773  Sum_probs=165.9

Q ss_pred             cccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEecc
Q 020510           36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM  115 (325)
Q Consensus        36 ~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~  115 (325)
                      .+++++|++++|.+++++|++++++++|++..+|.|+.+.++.++++|+||+|+||+||+++|+|+|||++|+|||++++
T Consensus         2 ~~t~~~Ai~~al~e~m~~d~~v~~~g~Dv~~~gg~~~~~~~~~~~~~p~R~~~~pIaE~~~ig~a~G~A~~G~~Piv~~~   81 (186)
T d1umdb1           2 LMTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAEIQ   81 (186)
T ss_dssp             EECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEECS
T ss_pred             eehHHHHHHHHHHHHHHhCcCEEEEecCcCCCCCcccccHHHHHhcCcceeeecccchhhhhhhHHHHHhccCceeEEEe
Confidence            47899999999999999999999999999988888887778778777999999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCcchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhH
Q 020510          116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAI  195 (325)
Q Consensus       116 ~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~  195 (325)
                      ++||++|++|||+|++++++|+++++.+.|++++++.|.+.+.+++|+++++++++++||++|++|+|+.|++.++++++
T Consensus        82 ~~~f~~~~~dqi~n~~~~~~~~~~g~~~~~~~~~~~~G~~~~g~~hhs~~~~~~~~~iPgl~V~~Ps~~~d~~~~l~~a~  161 (186)
T d1umdb1          82 FADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPSGGGVRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAI  161 (186)
T ss_dssp             SGGGCGGGHHHHHHTTTTHHHHTTTSSCCCCEEEEEECSSSSCGGGSSCCCHHHHHTSTTCEEEECCSHHHHHHHHHHHH
T ss_pred             ecchhhhhHHHHHHhHHHhccccCceeeeeeeeeccccccCCCccccccCHHHHhhhccceeeeecCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998767655556677889999999999999999999999999999999


Q ss_pred             hCCCcEEEEeCccccCc
Q 020510          196 RDPDPVVFLENELLYGE  212 (325)
Q Consensus       196 ~~~~Pv~ir~~~~l~~~  212 (325)
                      +.++|+|+++++.+|+.
T Consensus       162 ~~~~Pv~i~e~k~ly~~  178 (186)
T d1umdb1         162 RDEDPVVFLEPKRLYRS  178 (186)
T ss_dssp             HCSSCEEEEEEGGGSSS
T ss_pred             hCCCcEEEEechHHhcc
Confidence            99999999999998863

>d1ik6a1 c.36.1.7 (A:1-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: E1-beta subunit of pyruvate dehydrogenase, Pyr module
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=100.00  E-value=1.1e-43  Score=308.92  Aligned_cols=177  Identities=43%  Similarity=0.730  Sum_probs=141.9

Q ss_pred             cccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEecc
Q 020510           36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM  115 (325)
Q Consensus        36 ~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~  115 (325)
                      ..++++|+.++|.+++++|++++++++|++..+|.|+.+.+|.++|||+|++|+||+|++++|+|+|+|+.|+||+++++
T Consensus         7 ~~~~~~Ai~~Al~e~m~~d~~v~~~GeDv~~~Gg~f~~t~gL~~kfg~~Rv~dtpIsE~~~~G~a~GlA~~G~rPive~~   86 (191)
T d1ik6a1           7 MANMAKAINMALHEEMERDERVVVLGEDVGKKGGVFLVTEGLYERFGPERVIDTPLNEGGILGFAMGMAMAGLKPVAEIQ   86 (191)
T ss_dssp             EECHHHHHHHHHHHHHHHCTTEEEEEC---------CTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCeeecchhHHHHhhhheeeccccchhHHHHHHHHHHHhcCceEEEEE
Confidence            35789999999999999999999999999988899999999999999999999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCcchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhH
Q 020510          116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAI  195 (325)
Q Consensus       116 ~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~  195 (325)
                      +.+|+.+++|||+|++++++||++++.++|++++.+.|...+.|++|||+++++|+++||++|++|+|+.|++.++++|+
T Consensus        87 ~~df~~~a~dQi~n~~ak~~~~s~g~~~~p~vir~~~G~~~~gg~~Hs~~~~a~~~~iPgl~Vv~Ps~p~da~~ll~~al  166 (191)
T d1ik6a1          87 FVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSGTRGGLYHSNSPEAIFVHTPGLVVVMPSTPYNAKGLLKAAI  166 (191)
T ss_dssp             CC----CCHHHHHHHHHHHHC------CCCCEEEEEECC-----------HHHHHHTCTTCEEECCCSHHHHHHHHHHHH
T ss_pred             ecchhHHHHHHHHHHHHHHHHhcCCccccccceeecccCCCCCcccccCCHHHHHHHhhcccEEecCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999877666678899999999999999999999999999999999999


Q ss_pred             hCCCcEEEEeCccccCc
Q 020510          196 RDPDPVVFLENELLYGE  212 (325)
Q Consensus       196 ~~~~Pv~ir~~~~l~~~  212 (325)
                      +.++||++++++.+|+.
T Consensus       167 ~~~~Pv~~~e~k~ly~~  183 (191)
T d1ik6a1         167 RGDDPVVFLEPKILYRA  183 (191)
T ss_dssp             HSSSCEEEEEEGGGSSC
T ss_pred             hCCCcEEEEEcHHHhCC
Confidence            99999999999998864

>d2bfdb1 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: Branched-chain alpha-keto acid dehydrogenase, Pyr module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-42  Score=303.96  Aligned_cols=179  Identities=34%  Similarity=0.619  Sum_probs=165.0

Q ss_pred             ccccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEE
Q 020510           33 AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVV  112 (325)
Q Consensus        33 ~~~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v  112 (325)
                      +.+++++++|++++|.+.|++|++++++++|++ .+|+|+.+.+|.++|||+|++|+||+|++++|+|+|+|+.|+||++
T Consensus        16 ~~~~~~~~~Ai~~al~~~m~~d~~v~~~GedV~-~GGvf~~t~gL~~kfG~~Rv~dtPIsE~~~~G~a~G~A~~G~rPiv   94 (203)
T d2bfdb1          16 QTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIA   94 (203)
T ss_dssp             CEEEECHHHHHHHHHHHHHHHCTTCEEEETTTT-TTCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCCEEE
T ss_pred             ceeeeeHHHHHHHHHHHHHhhCCCEEEEecCcC-CCCccccchhhhhhhhhhheeccccccceecchhhhhhhcccceEE
Confidence            348899999999999999999999999999997 6889999999999999999999999999999999999999999999


Q ss_pred             ecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEE-eCCCCCCCCCCCcchHHHHHHhcCCCcEEEeeCCHHHHHHHH
Q 020510          113 EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFR-GPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLL  191 (325)
Q Consensus       113 ~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~-~~~G~~~g~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l  191 (325)
                      ++++.+|+++|+|||.|++++++||+|++.++|++++ .+.|..++.|++|||+++++|+++||++|++|+|+.|++.++
T Consensus        95 e~~f~dF~~~a~dqi~n~~ak~~~~~~g~~~~~~vv~~~~~g~~~~g~~~HSq~~~~~~~~~PGl~Vv~Ps~p~Da~gll  174 (203)
T d2bfdb1          95 EIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLL  174 (203)
T ss_dssp             ECSSGGGCGGGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESCCSSCGGGSSCCCHHHHHTSTTCEEECCSSHHHHHHHH
T ss_pred             EEEehhhhhhhHHHHHHHHhhhhcccCCccccccceeeeccccCccccccccccHHHHHcCCCCcEEEecCCHHHHHHHH
Confidence            9999999999999999999999999999999865544 443433334578999999999999999999999999999999


Q ss_pred             HHhHhCCCcEEEEeCccccCc
Q 020510          192 KAAIRDPDPVVFLENELLYGE  212 (325)
Q Consensus       192 ~~a~~~~~Pv~ir~~~~l~~~  212 (325)
                      +.|++.++||++++++.+|+.
T Consensus       175 ~~ai~~~~Pvi~~E~k~Ly~~  195 (203)
T d2bfdb1         175 LSCIEDKNPCIFFEPKILYRA  195 (203)
T ss_dssp             HHHHHSSSCEEEEEEGGGTTS
T ss_pred             HHHHhCCCcEEEEeeHHHhcC
Confidence            999999999999999999864

>d1itza2 c.36.1.6 (A:348-539) Transketolase (TK), Pyr module {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like Pyr module
domain: Transketolase (TK), Pyr module
species: Maize (Zea mays) [TaxId: 4577]

Probab=100.00  E-value=1.3e-34  Score=251.29  Aligned_cols=171  Identities=16%  Similarity=0.194  Sum_probs=142.0

Q ss_pred             ccccCcccccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCcc--ccchhHHHHhCCCceeechhhHHHHHHHHHHHh
Q 020510           27 LRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY--KISKGLLEKYGPERVLDTPITEAGFTGIGVGAA  104 (325)
Q Consensus        27 ~~~~~~~~~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~--~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA  104 (325)
                      ++.|..+.+.+++|++|+++|.++++++++++++++|++.++.+.  +....+.++| |+||||+||+||+|+++|+|||
T Consensus         9 lp~~~~~~~~~AtR~a~g~~L~~la~~~~~iv~~sADL~~St~t~~~~~~~~~~~~~-p~r~i~~GIaEq~m~~iAaGlA   87 (192)
T d1itza2           9 LPKYTPESPGDATRNLSQQCLNALANVVPGLIGGSADLASSNMTLLKMFGDFQKDTA-EERNVRFGVREHGMGAICNGIA   87 (192)
T ss_dssp             SCCCCTTSCCBCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCCTTCT-TCCBCCCCSCHHHHHHHHHHHH
T ss_pred             CcccCCCCCCchHHHHHHHHHHHHHhhCchhheeccccCCCcCcccccccccccccc-hhccceeceecchHHHHHHHHH
Confidence            456766667889999999999999999999999999998665432  1123467789 9999999999999999999999


Q ss_pred             c--cCCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC-CCC-CCCCCCcch-HHHHHHhcCCCcEEE
Q 020510          105 Y--YGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAA-AGVGAQHSH-CYAAWYASVPGLKVL  179 (325)
Q Consensus       105 ~--~G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~-~g~G~tHs~-~~~a~~~~iP~~~V~  179 (325)
                      +  .|++||+.+| ..|+.|+++|+++. ++        .++|+++++.+ |.. +.+|+||+. .+.++||+||||+|+
T Consensus        88 ~~~~G~~p~~~tf-~~F~~~~~~~~~~~-~~--------~~~~v~~v~~~~g~~~g~dG~TH~~ieDia~~r~iPn~~v~  157 (192)
T d1itza2          88 LHSPGFVPYCATF-FVFTDYMRGAMRIS-AL--------SEAGVIYVMTHDSIGLGEDGPTHQPIEHLVSFRAMPNILML  157 (192)
T ss_dssp             TTCTTCEEEEEEE-GGGHHHHHHHHHHH-HH--------HTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHSSSSCEEE
T ss_pred             HhcCCCEEEEEEE-hhhhhhccchhhhh-cc--------ccccceEEEecCCcccccCCcccHHHHHHHHHhCcCCceEE
Confidence            8  4899999998 55689999998875 55        46777776654 555 459999932 556999999999999


Q ss_pred             eeCCHHHHHHHHHHhHh-CCCcEEEEeCcc
Q 020510          180 SPYSSEDARGLLKAAIR-DPDPVVFLENEL  208 (325)
Q Consensus       180 ~P~d~~e~~~~l~~a~~-~~~Pv~ir~~~~  208 (325)
                      .|+|..|++.++++++. .++|+|||.+|.
T Consensus       158 ~P~d~~e~~~~~~~a~~~~~gP~yiRl~R~  187 (192)
T d1itza2         158 RPADGNETAGAYKVAVLNRKRPSILALSRQ  187 (192)
T ss_dssp             CCCSHHHHHHHHHHHHHCTTSCEEEEECSS
T ss_pred             ecCCHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence            99999999999999886 578999998765

>d1r9ja1 c.36.1.6 (A:337-526) Transketolase (TK), Pyr module {Leishmania mexicana mexicana [TaxId: 44270]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like Pyr module
domain: Transketolase (TK), Pyr module
species: Leishmania mexicana mexicana [TaxId: 44270]

Probab=100.00  E-value=7.3e-35  Score=252.16  Aligned_cols=166  Identities=16%  Similarity=0.165  Sum_probs=136.3

Q ss_pred             ccccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCcccc---chhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CC
Q 020510           33 AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKI---SKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GL  108 (325)
Q Consensus        33 ~~~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~---~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~-G~  108 (325)
                      .++++.+|++|++.|.++++++|++|++++|++.++.+...   ..+|.+++.|+||||+||+||||+++|+|+|+. |+
T Consensus        10 ~~~~iaTR~a~g~~L~~l~~~~p~iv~~sADL~~St~t~~~~~~~~~f~~~~~~~r~i~~GIaEqnm~~iAaGla~~~g~   89 (190)
T d1r9ja1          10 NSSAIATRKASENCLAVLFPAIPALMGGSADLTPSNLTRPASANLVDFSSSSKEGRYIRFGVREHAMCAILNGLDAHDGI   89 (190)
T ss_dssp             CCSCEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCSCGGGCCCBCBTTBTTCCEEECCSCHHHHHHHHHHHHHHSSC
T ss_pred             CCCCccHHHHHHHHHHHHHhhCcceEeeccccCccccccccccccccccccCCCCCeeeeccchhhHHHHHHHHHHcCCc
Confidence            35778999999999999999999999999999866543211   134556553679999999999999999999975 79


Q ss_pred             eeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC-CCC-CCCCCCcch-HHHHHHhcCCCcEEEeeCCHH
Q 020510          109 KPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAA-AGVGAQHSH-CYAAWYASVPGLKVLSPYSSE  185 (325)
Q Consensus       109 ~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~-~g~G~tHs~-~~~a~~~~iP~~~V~~P~d~~  185 (325)
                      +||++++ ++|+.|++||+|+++ +        .+.|+++++.+ |.. +.+|+||+. .+.++||+||||+|+.|+|..
T Consensus        90 ~p~~~t~-~~F~~r~~~~ir~~~-~--------~~~~v~~v~~~~g~~~g~dG~THq~ieDla~~R~iPn~~V~~PaD~~  159 (190)
T d1r9ja1          90 IPFGGTF-LNFIGYALGAVRLAA-I--------SHHRVIYVATHDSIGVGEDGPTHQPVELVAALRAMPNLQVIRPSDQT  159 (190)
T ss_dssp             EEEEEEE-GGGGGGGHHHHHHHH-H--------HTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHHSTTCEEECCSSHH
T ss_pred             ceEEecc-hhhhccchHHHHHhc-c--------cCCceEEEEecCccccCCCCcchhHHHHHHHHHhcCCEEEEecCCHH
Confidence            9999987 778999999999864 4        35677766654 654 459999932 556999999999999999999


Q ss_pred             HHHHHHHHhHh-CCCcEEEEeCcc
Q 020510          186 DARGLLKAAIR-DPDPVVFLENEL  208 (325)
Q Consensus       186 e~~~~l~~a~~-~~~Pv~ir~~~~  208 (325)
                      |++.+++++++ .++|+|||.+|.
T Consensus       160 E~~~al~~a~~~~~gP~yiRl~R~  183 (190)
T d1r9ja1         160 ETSGAWAVALSSIHTPTVLCLSRQ  183 (190)
T ss_dssp             HHHHHHHHHHHCTTCCEEEECCSS
T ss_pred             HHHHHHHHHHHcCCCCEEEEecCC
Confidence            99999999986 478999997764

>d1gpua2 c.36.1.6 (A:338-534) Transketolase (TK), Pyr module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like Pyr module
domain: Transketolase (TK), Pyr module
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3e-34  Score=250.06  Aligned_cols=172  Identities=16%  Similarity=0.241  Sum_probs=143.3

Q ss_pred             cccccCcccccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCcc-------ccchhHHHHhCCCceeechhhHHHHHH
Q 020510           26 NLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY-------KISKGLLEKYGPERVLDTPITEAGFTG   98 (325)
Q Consensus        26 ~~~~~~~~~~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~-------~~~~~~~~~~gp~R~i~~GIaE~~~vg   98 (325)
                      .+++|..+++++.+|++++++|.++++++++++++++|+..++.+.       .-...|+++| |+||||+||+||+|++
T Consensus         8 ~lp~~~~~~~~~aTR~a~g~~L~~la~~~p~lv~~sADL~~St~t~~~~~~~f~~~~~~~~~~-p~R~i~~GIaEq~m~~   86 (197)
T d1gpua2           8 KLPTYTAKDSAVATRKLSETVLEDVYNQLPELIGGSADLTPSNLTRWKEALDFQPPSSGSGNY-SGRYIRYGIREHAMGA   86 (197)
T ss_dssp             GSCCCCTTSCCBCHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEECCTTTSSEET-TCCEEECCSCHHHHHH
T ss_pred             hCcccCCCCCCcchHHHHHHHHHHHHhhChhhcccccccCCccccccccccccccccccccCC-CCceeecccchhhHHH
Confidence            3567777778899999999999999999999999999997655431       1012356789 9999999999999999


Q ss_pred             HHHHHhccC--CeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC-CCCC-CCCCCcc-hHHHHHHhcC
Q 020510           99 IGVGAAYYG--LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAA-GVGAQHS-HCYAAWYASV  173 (325)
Q Consensus        99 ~A~GlA~~G--~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~~-g~G~tHs-~~~~a~~~~i  173 (325)
                      +|+|||++|  ++|++.++ ..|+.|+++|+++ .++        .++|+++++.+ |... .+|+||+ ..+.++||+|
T Consensus        87 iaaGlA~~G~~~~p~~~t~-~~f~~~~~~~~~~-~~~--------~~~~v~~v~t~~g~~~g~dG~THq~ieDia~~r~i  156 (197)
T d1gpua2          87 IMNGISAFGANYKPYGGTF-LNFVSYAAGAVRL-SAL--------SGHPVIWVATHDSIGVGEDGPTHQPIETLAHFRSL  156 (197)
T ss_dssp             HHHHHHHHCTTCEEEEEEE-HHHHGGGHHHHHH-HHH--------HTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTS
T ss_pred             HHHHHHHcCCceeEEEEee-hhhhhhhHHHHHH-hhh--------cCCceEEEEecccccccccccchhhHHHHHHHhcC
Confidence            999999999  58999887 5578889999887 466        46788877654 6554 5999993 2556999999


Q ss_pred             CCcEEEeeCCHHHHHHHHHHhHhC-CCcEEEEeCcc
Q 020510          174 PGLKVLSPYSSEDARGLLKAAIRD-PDPVVFLENEL  208 (325)
Q Consensus       174 P~~~V~~P~d~~e~~~~l~~a~~~-~~Pv~ir~~~~  208 (325)
                      |||+|+.|+|..|++.+++++++. ++|+|||.+|.
T Consensus       157 Pn~~v~~PaD~~e~~~a~~~a~~~~~gP~yiRl~R~  192 (197)
T d1gpua2         157 PNIQVWRPADGNEVSAAYKNSLESKHTPSIIALSRQ  192 (197)
T ss_dssp             SSCEEECCCSHHHHHHHHHHHHHCSSCCEEEECCSS
T ss_pred             CCcEEEecCCHHHHHHHHHHHHHcCCCCEEEEecCC
Confidence            999999999999999999999875 68999998765

>d2r8oa1 c.36.1.6 (A:333-527) Transketolase (TK), Pyr module {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like Pyr module
domain: Transketolase (TK), Pyr module
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.1e-33  Score=245.68  Aligned_cols=165  Identities=15%  Similarity=0.152  Sum_probs=137.4

Q ss_pred             cccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCcc-ccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeeE
Q 020510           34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY-KISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPV  111 (325)
Q Consensus        34 ~~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~-~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~-G~~p~  111 (325)
                      .+++.+|++++++|.++++..|+++..++|+..++.+. .-...|.++| |+||||+||+||+|+++|+|||+. |++|+
T Consensus        20 ~~~~ATR~asg~~L~~la~~~p~liggsADL~~St~t~~~~~~~f~~~~-p~r~i~~GIaEq~M~~iAaGlA~~g~~~p~   98 (195)
T d2r8oa1          20 PAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDA-AGNYIHYGVREFGMTAIANGISLHGGFLPY   98 (195)
T ss_dssp             CCCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCCCTTCCBTTTCT-TCSEEECCSCHHHHHHHHHHHHHHSSCEEE
T ss_pred             CCCcchHHHHHHHHHHHHhhcccceecccccccccccccccccccccCC-CCCeeeeeeehhhHHHHHHHHHhhCCceEE
Confidence            36788999999999999999999999999998766542 1124588899 999999999999999999999976 57888


Q ss_pred             EecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCC-CCCCCCcch-HHHHHHhcCCCcEEEeeCCHHHHHH
Q 020510          112 VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA-AGVGAQHSH-CYAAWYASVPGLKVLSPYSSEDARG  189 (325)
Q Consensus       112 v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~-~g~G~tHs~-~~~a~~~~iP~~~V~~P~d~~e~~~  189 (325)
                      ++++ .+|+.|+++|||+++++        ...++++...+|.+ +.+|+||+. .+.++||+||||+|+.|+|+.|+..
T Consensus        99 ~stf-~~f~~~~~~~ir~~~~~--------~~~~v~v~~h~g~~~g~dG~THq~iEDia~lR~iPn~~v~~P~D~~E~~~  169 (195)
T d2r8oa1          99 TSTF-LMFVEYARNAVRMAALM--------KQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAV  169 (195)
T ss_dssp             EEEE-GGGGGTTHHHHHHHHHT--------TCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHHHH
T ss_pred             eecc-eeeeccccchhhccccc--------cccceeeeccccccccccchhhHHHHHHHHHHhhCCcEEEecCCHHHHHH
Confidence            8887 78899999999998774        23444444444554 459999932 5569999999999999999999999


Q ss_pred             HHHHhHhC-CCcEEEEeCcc
Q 020510          190 LLKAAIRD-PDPVVFLENEL  208 (325)
Q Consensus       190 ~l~~a~~~-~~Pv~ir~~~~  208 (325)
                      +++++++. ++|+|||.+|.
T Consensus       170 a~~~a~~~~~gP~ylRl~R~  189 (195)
T d2r8oa1         170 AWKYGVERQDGPTALILSRQ  189 (195)
T ss_dssp             HHHHHHHCSSSCEEEECCSS
T ss_pred             HHHHHHHcCCCCEEEEecCC
Confidence            99999875 68999998765

>d1umdb2 c.48.1.2 (B:188-324) Branched-chain alpha-keto acid dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
domain: Branched-chain alpha-keto acid dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.91  E-value=6.5e-25  Score=180.55  Aligned_cols=95  Identities=37%  Similarity=0.551  Sum_probs=91.8

Q ss_pred             CccccCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCCeEEEEecCCCCC
Q 020510          224 SFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQH  303 (325)
Q Consensus       224 ~~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~G  303 (325)
                      +|.+++||++++++|+|++|||+|.|+++|++|++.|+++||+++|||++|++|||.+.|.++++++++++|+|||+..|
T Consensus         1 dY~~~iGk~~v~r~G~dvtiis~G~~~~~al~aa~~L~~~gi~~~vid~~~lkPlD~~~i~~sv~kt~~vv~veE~~~~g   80 (137)
T d1umdb2           1 DYTLPIGKAALRREGKDLTLICYGTVMPEVLQAAAELAKAGVSAEVLDLRTLMPWDYEAVMNSVAKTGRVVLVSDAPRHA   80 (137)
T ss_dssp             CCCCCTTCCEEEECCSSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEECCEEETCCHHHHHHHHHHHSCEEEEEEEESTT
T ss_pred             CceEeCCEEEEEEeCCCEEEEEcchhhhhhhhhhhcccccCcceEEEeecccCCcchhhhhHHHhccCcEEEEEcccccc
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHcCCCc
Q 020510          304 GVGAEIWCAFFPPAW  318 (325)
Q Consensus       304 Glg~~v~~~l~~~~~  318 (325)
                      |+|+.|++.+++++|
T Consensus        81 g~g~~v~~~l~e~~~   95 (137)
T d1umdb2          81 SFVSEVAATIAEDLL   95 (137)
T ss_dssp             CHHHHHHHHHHHHHG
T ss_pred             hhHHHHHHHHHHhhh
Confidence            999999999988765

>d2bfdb2 c.48.1.2 (B:205-342) Branched-chain alpha-keto acid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
domain: Branched-chain alpha-keto acid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.1e-24  Score=177.64  Aligned_cols=96  Identities=34%  Similarity=0.503  Sum_probs=91.7

Q ss_pred             CccccCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhc-CCcEEEEEeeeccCCCHHHHHHHHhCCCeEEEEecCCCC
Q 020510          224 SFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQ  302 (325)
Q Consensus       224 ~~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~-Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~  302 (325)
                      +|.+++||++++++|+|++|||+|.|++.|++|++.|+++ ||+++|||++||+|||.+.|.++++++++++|+|||+..
T Consensus         1 py~i~iGk~~v~~~G~DitIis~G~~~~~al~aa~~L~~~~gi~~~vid~~~l~PlD~~~i~~s~~kt~~livvee~~~~   80 (138)
T d2bfdb2           1 PYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAKEKLGVSCEVIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLT   80 (138)
T ss_dssp             CCCCCSSCCEEEECCSSEEEEECTTHHHHHHHHHHHHHHHHCCCEEEEECCEEESCCHHHHHHHHHHHSCEEEEEEEEST
T ss_pred             CeeEeCCEEEEEEeCCeEEEEEChHHHHHHHHHHHHHHhcCCcceeeeeeccccccchHHHHHHhcccCeEEEecCcccc
Confidence            4678999999999999999999999999999999999866 999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCcc
Q 020510          303 HGVGAEIWCAFFPPAWL  319 (325)
Q Consensus       303 GGlg~~v~~~l~~~~~~  319 (325)
                      ||+|++|++.+.+++|.
T Consensus        81 gG~gs~i~~~l~~~~~~   97 (138)
T d2bfdb2          81 GGFASEISSTVQEECFL   97 (138)
T ss_dssp             TCHHHHHHHHHHHHHGG
T ss_pred             ccHHHHHHHHHHHhhHh
Confidence            99999999999988764

>d2ozlb2 c.48.1.2 (B:192-329) E1-beta subunit of pyruvate dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
domain: E1-beta subunit of pyruvate dehydrogenase, C-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=4.6e-23  Score=169.57  Aligned_cols=94  Identities=55%  Similarity=0.832  Sum_probs=89.9

Q ss_pred             ccCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHH
Q 020510          227 LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVG  306 (325)
Q Consensus       227 ~~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg  306 (325)
                      +|+||++++++|+|++||++|.|++.|++|++.|+++|++++|||+++++|||.+.|.++++++++++|+|||+..||+|
T Consensus         2 ipiGK~~i~~~G~ditiis~G~~~~~al~aa~~L~~~gi~~~vid~~~lkPld~~~i~~~~~k~~~iivvee~~~~gG~g   81 (138)
T d2ozlb2           2 IPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVG   81 (138)
T ss_dssp             CCTTCCEEEECCSSEEEEECSTHHHHHHHHHHHHHTTTCCEEEEECCEEETCCHHHHHHHHHHHSCEEEECSSCSTTCHH
T ss_pred             ccCCeeEEEEeCCCEEEEEccHHHHhHHHHhhhhcccCcceEEEEeccccCCcchhhhhhhccccceEEeecccccchHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCccc
Q 020510          307 AEIWCAFFPPAWLI  320 (325)
Q Consensus       307 ~~v~~~l~~~~~~~  320 (325)
                      +++++.+.|++.+.
T Consensus        82 s~i~~~l~e~~~~~   95 (138)
T d2ozlb2          82 AEICARIMEGPAFN   95 (138)
T ss_dssp             HHHHHHHHHSTTGG
T ss_pred             HHHHHHHHhhhhhh
Confidence            99999999876543

>d1w85b2 c.48.1.2 (B:193-324) Pyruvate dehydrogenase E1-beta, PdhB, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
domain: Pyruvate dehydrogenase E1-beta, PdhB, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.87  E-value=4e-23  Score=168.62  Aligned_cols=90  Identities=51%  Similarity=0.681  Sum_probs=86.9

Q ss_pred             CceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHH
Q 020510          230 GKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI  309 (325)
Q Consensus       230 gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v  309 (325)
                      ||++++++|+|++||++|.|+++|++|++.|+++||+++|||++|++|||.+.|.++++++++++|+|||+..||+|++|
T Consensus         1 Gk~~v~~~G~dvtIis~G~~~~~al~Aa~~L~~~gi~~~vid~~~lkPlD~~~i~~~~~kt~~vivveE~~~~gG~gs~i   80 (132)
T d1w85b2           1 GKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRTVQPLDIETIIGSVEKTGRAIVVQEAQRQAGIAANV   80 (132)
T ss_dssp             TCCEEEECCSSEEEEECTTHHHHHHHHHHHHHHTTCCEEEEECSEEESCCHHHHHHHHHHHSCEEEEEEEETTSSSHHHH
T ss_pred             CceEEEEeCCCEEEEEChHHHHHHHHHHHHHHhcCCCeEEEeeeccCCcchhhhhHHHhccCCeeEEecccccccHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCcc
Q 020510          310 WCAFFPPAWL  319 (325)
Q Consensus       310 ~~~l~~~~~~  319 (325)
                      ++.+.+++|.
T Consensus        81 ~~~l~~~~~~   90 (132)
T d1w85b2          81 VAEINERAIL   90 (132)
T ss_dssp             HHHHHHHHGG
T ss_pred             HHHHHHhchh
Confidence            9999987664

>d1ik6a2 c.48.1.2 (A:192-326) E1-beta subunit of pyruvate dehydrogenase, C-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
domain: E1-beta subunit of pyruvate dehydrogenase, C-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.87  E-value=4.5e-23  Score=168.99  Aligned_cols=93  Identities=37%  Similarity=0.559  Sum_probs=88.1

Q ss_pred             CccccCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCCeEEEEecCCCCC
Q 020510          224 SFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQH  303 (325)
Q Consensus       224 ~~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~G  303 (325)
                      +|.+++||++++++|+|++|||+|.|++.|++|++.|   +++++|||++|++|||+++|.++++++++++|+|||+..|
T Consensus         1 dY~~~~Gk~~ilr~G~dvtIi~~G~mv~~al~aa~~l---~~~~~vid~~~lkPlD~~~i~~~~~k~~~vvvvEe~~~~g   77 (135)
T d1ik6a2           1 DYVVEIGKARVAREGDDVTLVTYGAVVHKALEAAERV---KASVEVVDLQTLNPLDFDTVLKSVSKTGRLIIAHDSPKTG   77 (135)
T ss_dssp             SCCCCTTCCEEEECCSSEEEEECTTHHHHHHHHHHTS---SSCEEEEECCEEETTCHHHHHHHHHHHCCEEEEEEEESTT
T ss_pred             CceeeCCEEEEEEeCCcEEEEEeccchHHHHHHHHhh---ccchhhhccccccCCChHHHhHHHhccCCcEEEecCcccc
Confidence            5788999999999999999999999999999999877   4689999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHcCCCcc
Q 020510          304 GVGAEIWCAFFPPAWL  319 (325)
Q Consensus       304 Glg~~v~~~l~~~~~~  319 (325)
                      |+|++|++.+++++|.
T Consensus        78 G~gs~i~~~l~e~~~~   93 (135)
T d1ik6a2          78 GLGAEVRALVAEKALD   93 (135)
T ss_dssp             SHHHHHHHHHHHHSGG
T ss_pred             chHHHHHHHHHHhhhc
Confidence            9999999999998863

>d1qs0b2 c.48.1.2 (B:206-339) 2-oxoisovalerate dehydrogenase E1b, C-domain {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
domain: 2-oxoisovalerate dehydrogenase E1b, C-domain
species: Pseudomonas putida [TaxId: 303]

Probab=99.86  E-value=1.4e-22  Score=165.72  Aligned_cols=92  Identities=40%  Similarity=0.585  Sum_probs=87.0

Q ss_pred             ccccCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCCeEEEEecCCCCCC
Q 020510          225 FCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHG  304 (325)
Q Consensus       225 ~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GG  304 (325)
                      |.+++||++++++|+|++||++|.|++.|++|++   ++|++++|||++|++|||.+.|.++++++++++|+|||+..||
T Consensus         2 y~~piGk~~v~~~G~Ditiis~G~~v~~a~~a~~---~~gi~~~vidl~~l~PlD~~~i~~~~~kt~~vi~vEe~~~~gG   78 (134)
T d1qs0b2           2 YTVPLDKAAITRPGNDVSVLTYGTTVYVAQVAAE---ESGVDAEVIDLRSLWPLDLDTIVESVKKTGRCVVVHEATRTCG   78 (134)
T ss_dssp             CCCCTTCCCEEECCSSCEEEECTTHHHHHHHHHH---HHCCCCEEEECSEEESCCHHHHHHHHHHHSCEEEEESSCSTTS
T ss_pred             eeecCCEEEEEEeCCCEEEEEeehHHHHHHHHHh---hcCcchhheeccccCCcchhhHHHHHhCCceEEEEecCccccc
Confidence            5678999999999999999999999999999976   4699999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCcc
Q 020510          305 VGAEIWCAFFPPAWL  319 (325)
Q Consensus       305 lg~~v~~~l~~~~~~  319 (325)
                      +|++|++.+++++|-
T Consensus        79 ~gs~i~~~l~e~~~~   93 (134)
T d1qs0b2          79 FGAELVSLVQEHCFH   93 (134)
T ss_dssp             THHHHHHHHHHHSSS
T ss_pred             hHHHHHHHHHHhhhh
Confidence            999999999988753

>d2ieaa1 c.36.1.6 (A:471-700) Pyruvate dehydrogenase E1 component, Pyr module {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like Pyr module
domain: Pyruvate dehydrogenase E1 component, Pyr module
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=3.9e-13  Score=115.48  Aligned_cols=161  Identities=15%  Similarity=0.212  Sum_probs=119.8

Q ss_pred             ccccccHHHHHHHHHHHHHhcC---CcEEEEecCCCCccCccccchhHHHHhC------------------------CCc
Q 020510           33 AVKQMMVREALNSALDEEMSAD---PKVFLMGEEVGEYQGAYKISKGLLEKYG------------------------PER   85 (325)
Q Consensus        33 ~~~~~s~~~a~~~~L~~l~~~d---~~iv~l~~D~~~~~g~~~~~~~~~~~~g------------------------p~R   85 (325)
                      +++.+|+..||++.|.++++..   ++||.+.+|+++   +|++ +++..+.|                        ..|
T Consensus        18 ~~r~iSTt~Af~riL~~L~rd~~lg~RiVpivPDear---Tfgm-~~~f~q~GIys~~gq~y~p~D~~~~~~y~e~~~GQ   93 (230)
T d2ieaa1          18 QSKEISTTIAFVRALNVMLKNKSIKDRLVPIIADEAR---TFGM-EGLFRQIGIYSPNGQQYTPQDREQVAYYKEDEKGQ   93 (230)
T ss_dssp             CSSCBCHHHHHHHHHHHHTTCTTTGGGEEEEESSCSG---GGTC-HHHHHHHCBBCC-----------------CBTTCC
T ss_pred             CCccccHHHHHHHHHHHHhcCcccccceeeecCccce---ecch-hhhhhhcceeeeccccccccccccceEccccCCCc
Confidence            4588999999999999999853   679999999986   4555 66666655                        589


Q ss_pred             eeechhhHHHHHHH--HHHHhcc--C--CeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC-CCC-CC
Q 020510           86 VLDTPITEAGFTGI--GVGAAYY--G--LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAA-AG  157 (325)
Q Consensus        86 ~i~~GIaE~~~vg~--A~GlA~~--G--~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~-~g  157 (325)
                      +++.||+|.++++.  |+|.|.+  |  +.||...+..|..+|.-|.+ ..++.       .+...+++.+.- +.+ .+
T Consensus        94 ~le~GI~E~g~~~~~~Aagtsy~~~g~~miP~y~~YsmFg~qr~~dl~-waa~d-------~~argFl~g~T~grtTL~g  165 (230)
T d2ieaa1          94 ILQEGINELGAGCSWLAAATSYSTNNLPMIPFYIYYSMFGFQRIGDLC-WAAGD-------QQARGFLIGGTSGRTTLNG  165 (230)
T ss_dssp             BEECCSCHHHHHHHHHHHHTHHHHTSCCCEEEEEEEGGGSHHHHHHHH-HHHHH-------TTCCSEEEEESCSTTTSTT
T ss_pred             EeeccchhhhHHHHHHHhhhhHhhcCCccceeeeehhHHHhhhHhHHH-HHHHh-------hccCceEEEecCCCCeecC
Confidence            99999999999975  5566544  5  78998655444455655543 33332       256677777654 454 57


Q ss_pred             CCCCcchHH--HHHHhcCCCcEEEeeCCHHHHHHHHHHhHhC-----CCcEEEEeC
Q 020510          158 VGAQHSHCY--AAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLEN  206 (325)
Q Consensus       158 ~G~tHs~~~--~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~ir~~  206 (325)
                      .|.+| |+.  ..+...+||+.-|.|+...|+..++++.++.     +.-||++.+
T Consensus       166 EGlqH-qdg~s~l~~~~~P~~~sydPafa~Ela~i~~~Gl~rM~~~~~~~v~yylt  220 (230)
T d2ieaa1         166 EGLQH-EDGHSHIQSLTIPNCISYDPAYAYEVAVIMHDGLERMYGEKQENVYYYIT  220 (230)
T ss_dssp             TCBTT-CCSCHHHHHTTSTTEEEECCSSHHHHHHHHHHHHHHHHSTTCCCCEEEEE
T ss_pred             Ccccc-cccccceecccCCCceEEcchHHHHHHHHHHHHHHHHhCCCCCcEEEEEE
Confidence            89999 543  3567789999999999999999999998872     346777754

>d2c42a3 c.48.1.3 (A:259-415) Pyruvate-ferredoxin oxidoreductase, PFOR, domain II {Desulfovibrio africanus [TaxId: 873]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Pyruvate-ferredoxin oxidoreductase, PFOR, domain II
domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domain II
species: Desulfovibrio africanus [TaxId: 873]

Probab=99.41  E-value=2e-13  Score=113.55  Aligned_cols=79  Identities=14%  Similarity=0.188  Sum_probs=66.2

Q ss_pred             eCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCC-CeEEEEecCCCCCC----HHHHHHH
Q 020510          237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKT-NRLVTVEEGFPQHG----VGAEIWC  311 (325)
Q Consensus       237 ~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~-~~vvvvEe~~~~GG----lg~~v~~  311 (325)
                      ++.|++||++|+++..+++|++.|+++|++++||++++++|||.+.|.+.+.++ +.|+|+|++...|+    +..+|.+
T Consensus         9 ~dAd~viV~~Gs~~~~a~~A~~~L~~~Gi~vgvi~~r~lrPf~~~~l~~~l~k~~k~V~Vle~~~~~G~~g~~L~~dv~s   88 (157)
T d2c42a3           9 PDAERVIVSMGSSCETIEEVINHLAAKGEKIGLIKVRLYRPFVSEAFFAALPASAKVITVLDRTKEPGAPGDPLYLDVCS   88 (157)
T ss_dssp             TTCSEEEEECSTHHHHHHHHHHHHHTTTCCEEEEEESEEESCCHHHHHHTSCTTCCEEEEEESSCCTTCSSCHHHHHHHH
T ss_pred             CCCCEEEEEeCHhHHHHHHHHHHHHhhcccccEEEeEEEEeCCHHHHHHHHhccCCEEEEEeCCcCCCCCchHHHHHHHH
Confidence            457999999999999999999999999999999999999999999988887655 45666666666655    5566777


Q ss_pred             HHcC
Q 020510          312 AFFP  315 (325)
Q Consensus       312 ~l~~  315 (325)
                      +|.+
T Consensus        89 aL~~   92 (157)
T d2c42a3          89 AFVE   92 (157)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7764

>d1gpua3 c.48.1.1 (A:535-680) Transketolase (TK), C-domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Transketolase C-terminal domain-like
domain: Transketolase (TK), C-domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.29  E-value=2.1e-12  Score=105.82  Aligned_cols=73  Identities=21%  Similarity=0.193  Sum_probs=64.7

Q ss_pred             ceEEeeeCC--cEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCC---CHHHHHHHHhCCCeEEEEecCCCCC
Q 020510          231 KAKIEREGK--DVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPL---DRSTINASVRKTNRLVTVEEGFPQH  303 (325)
Q Consensus       231 k~~vl~~G~--dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~---d~~~l~~~~~~~~~vvvvEe~~~~G  303 (325)
                      ++++++++.  |++||++|++++.|++|++.|+++||+++||+++|++||   |.+...+.+..+..++++|.+...|
T Consensus        11 GaYiL~~~~~pdvtiiAsGsev~~AleAa~~L~~~GI~v~Vvs~ps~~~~~~q~~~~~~~~~~~~~~~v~iEa~~~~g   88 (146)
T d1gpua3          11 GGYVLQDVANPDIILVATGSEVSLSVEAAKTLAAKNIKARVVSLPDFFTFDKQPLEYRLSVLPDNVPIMSVEVLATTC   88 (146)
T ss_dssp             SCEEEECCSSCSEEEEECTHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHSCHHHHHHHSCSSSCEEEECSSCSTT
T ss_pred             cCEEEeeCCCCCEEEEEeCHHHHHHHHHHHHHHhhccCccEEEeehhhHHHhhhHHHhhhhcccccceeeEEeccccc
Confidence            367888865  999999999999999999999999999999999999999   7677777777777899999998764

>d2r8oa3 c.48.1.1 (A:528-663) Transketolase (TK), C-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Transketolase C-terminal domain-like
domain: Transketolase (TK), C-domain
species: Escherichia coli [TaxId: 562]

Probab=99.22  E-value=2.5e-13  Score=110.27  Aligned_cols=86  Identities=15%  Similarity=0.126  Sum_probs=69.3

Q ss_pred             eEEeeeCC---cEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHH
Q 020510          232 AKIEREGK---DVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAE  308 (325)
Q Consensus       232 ~~vl~~G~---dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~  308 (325)
                      +++++++.   |++||++|+++++|++|++.|+++||+++||+++|++|||.+.... .++...+.+.+++...+|++..
T Consensus        13 ~Yvl~~~~~~~dv~iiasGs~v~~aleAa~~L~~~gI~~~Vi~~~~~k~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~   91 (136)
T d2r8oa3          13 GYVLKDCAGQPELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAY-RESVLPKAVTARVAVEAGIADY   91 (136)
T ss_dssp             CEEEECCSSSCSEEEEECGGGHHHHHHHHHHHHHHTCCEEEEECSCHHHHHTSCHHH-HHHHSCTTCCCEEEEEEEEGGG
T ss_pred             CEEEeecCCCCCEEEEeeccchHHHHHHHHHHHhcCCCceEeechhhhHHHHhHHHH-HHHhcccccccceeEEecCcch
Confidence            56777754   9999999999999999999999999999999999999998776443 3333344556667778888888


Q ss_pred             HHHHHcCCCc
Q 020510          309 IWCAFFPPAW  318 (325)
Q Consensus       309 v~~~l~~~~~  318 (325)
                      +..++.+++.
T Consensus        92 ~~~~~~~~~~  101 (136)
T d2r8oa3          92 WYKYVGLNGA  101 (136)
T ss_dssp             GHHHHTTSSE
T ss_pred             HHHhhcCCCc
Confidence            8888876543

>d1itza3 c.48.1.1 (A:540-675) Transketolase (TK), C-domain {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Transketolase C-terminal domain-like
domain: Transketolase (TK), C-domain
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.69  E-value=1.1e-08  Score=82.33  Aligned_cols=71  Identities=18%  Similarity=0.247  Sum_probs=54.5

Q ss_pred             eEEeeeC-----CcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCH---HHHHHHHhC-CCeEEEEecCCCC
Q 020510          232 AKIEREG-----KDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDR---STINASVRK-TNRLVTVEEGFPQ  302 (325)
Q Consensus       232 ~~vl~~G-----~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~---~~l~~~~~~-~~~vvvvEe~~~~  302 (325)
                      +++++++     .|++|+++|+++++|++|++.|+++||+++||+++++++|+.   +.....+.. ...++++|.+...
T Consensus        12 ~Y~l~~~~~~~~~dv~liasGs~v~~al~Aa~~L~~~gi~~~Vvs~p~~~~~~~~~~~~~~~i~~~~~~~~~~ie~~~~~   91 (136)
T d1itza3          12 GYTISDNSTGNKPDLIVMGTGSELEIAAKAADELRKEGKTVRVVSFVSWELFDEQSDEYKESVLPAAVTARISIEAGSTL   91 (136)
T ss_dssp             SEEEEECCSTTCCSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEECSSCCT
T ss_pred             CEEEeecCCCCCCCEEEEEecHHHHHHHHHHHHHHhccccccccccccchhhhhhhhhhhhccccccccccchhhhhhhh
Confidence            5677754     389999999999999999999999999999999999887743   333333322 3356788887654

>d1r9ja3 c.48.1.1 (A:527-669) Transketolase (TK), C-domain {Leishmania mexicana mexicana [TaxId: 44270]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Transketolase C-terminal domain-like
domain: Transketolase (TK), C-domain
species: Leishmania mexicana mexicana [TaxId: 44270]

Probab=98.68  E-value=2.1e-08  Score=81.14  Aligned_cols=72  Identities=19%  Similarity=0.113  Sum_probs=58.3

Q ss_pred             eEEeeeC--CcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccC---CCHHHHHHHHhCCCeEEEEecCCCCCC
Q 020510          232 AKIEREG--KDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRP---LDRSTINASVRKTNRLVTVEEGFPQHG  304 (325)
Q Consensus       232 ~~vl~~G--~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P---~d~~~l~~~~~~~~~vvvvEe~~~~GG  304 (325)
                      +++++++  .|++|||+|++++.|++|++.|+++ |+++||+++|+++   .+.+...+.+.+...++++|.+...|.
T Consensus        10 aYil~~~~~~dvtiiAtGseV~~AleAA~~L~~~-I~~~VVS~ps~~~~~~~~~~y~~~vl~~~~~~v~vEa~~~~gw   86 (143)
T d1r9ja3          10 AYSVVDVPDLQLVIVASGSEVSLAVDAAKALSGE-LRVRVVSMPCQELFDAQPDTYRQAVLPAGVPVVSVEAYVSFGW   86 (143)
T ss_dssp             CEEEECCTTCSEEEEECGGGHHHHHHHHHHHTTT-CCEEEEECSCHHHHHTSCHHHHHHHSCTTSCEEEECSSCCTTG
T ss_pred             CEEEeeCCCCCEEEEEccHHHHHHHHHHHHHHhh-cceeEeeeeehhhhhhhhHHHHHHhCCCcccceeeEeecccce
Confidence            4566664  5799999999999999999999875 9999999987655   455566666767677899999987654

>d2c42a1 c.36.1.8 (A:2-258) Pyruvate-ferredoxin oxidoreductase, PFOR, domain I {Desulfovibrio africanus [TaxId: 873]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: PFOR Pyr module
domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domain I
species: Desulfovibrio africanus [TaxId: 873]

Probab=98.23  E-value=9.3e-06  Score=71.51  Aligned_cols=110  Identities=19%  Similarity=0.133  Sum_probs=79.4

Q ss_pred             eeechhhHHHHHHHHHHHhccCCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeC-C-CCCCCCCCCcc
Q 020510           86 VLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GAAAGVGAQHS  163 (325)
Q Consensus        86 ~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~~~g~G~tHs  163 (325)
                      .+....+|..+++++.|.+.+|.|.++.+. +..+..+.|.|.. ++.        ..+|+++... . +...+...+..
T Consensus        56 ~~~~~e~E~~A~~~~~Ga~~aG~r~~t~ts-~~Gl~~m~e~l~~-a~~--------~~~P~V~~v~~r~~~~~~~~~~~~  125 (257)
T d2c42a1          56 TIREMQSEAGAAGAVHGALAAGALTTTFTA-SQGLLLMIPNMYK-ISG--------ELLPGVFHVTARAIAAHALSIFGD  125 (257)
T ss_dssp             EEEECSSHHHHHHHHHHHHHTTCCEEEEEC-HHHHHHHHHHHHH-HHH--------TTCCCEEEEEECCCCSSSBCCSCC
T ss_pred             EEEEecccchhHHHHHHHHhcCCCeEEEec-chHHHHHHHHHHH-HHh--------cCCceEEEEEecCCCCCCCccccc
Confidence            455578999999999999999999999997 5567889998855 332        4788766543 2 22222222223


Q ss_pred             hHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEeC
Q 020510          164 HCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLEN  206 (325)
Q Consensus       164 ~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~ir~~  206 (325)
                      |.+. ++...-++.++.|+|++|+.++...|++    .+.||++..+
T Consensus       126 q~d~-~~~~~~g~~~l~~~s~QEa~d~~~~A~~lae~~~~Pv~~~~D  171 (257)
T d2c42a1         126 HQDI-YAARQTGFAMLASSSVQEAHDMALVAHLAAIESNVPFMHFFD  171 (257)
T ss_dssp             SHHH-HTTTTSSCEEEECCSHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred             hHHH-HHHHhcceEEEecCCHHHHHHHHHHHHHHHHHhCCCEEEEec
Confidence            4433 3344558899999999999999998887    3679998654

>d2ieaa3 c.48.1.1 (A:701-886) Pyruvate dehydrogenase E1 component, C-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Transketolase C-terminal domain-like
domain: Pyruvate dehydrogenase E1 component, C-domain
species: Escherichia coli [TaxId: 562]

Probab=97.14  E-value=0.00012  Score=60.98  Aligned_cols=51  Identities=22%  Similarity=0.259  Sum_probs=42.2

Q ss_pred             eEEeee--C--CcEEEEEechhHHHHHHHHH-HHHhcCCcEEEEEeeeccCCCHHH
Q 020510          232 AKIERE--G--KDVTITAFSKIVGLSLKAAE-ILAKEGISAEVINLRSIRPLDRST  282 (325)
Q Consensus       232 ~~vl~~--G--~dv~Iia~G~~~~~a~~Aa~-~L~~~Gi~~~Vi~~~~l~P~d~~~  282 (325)
                      ++++++  +  .+++|+++|+.+.+|++|++ .|++.|++++|++++|..-|+.+.
T Consensus        13 ~Y~l~~~~~~~p~v~LlaSGsev~~aleAa~~ll~~~gi~~~VvS~pS~~~l~~~~   68 (186)
T d2ieaa3          13 IYKLETIEGSKGKVQLLGSGSILRHVREAAEILAKDYGVGSDVYSVTSFTELARDG   68 (186)
T ss_dssp             CEEEEEECCSSEEEEEEECGGGHHHHHHHHHHHHHHHCEEEEEEECSCHHHHHHHH
T ss_pred             cEEeeecCCCCceEEEEEehHHHHHHHHHHHHHHHhcCCCceEEEecCHHHHHHhh
Confidence            445553  2  58999999999999999998 567779999999999998887654

>d2djia2 c.36.1.5 (A:3-186) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Pyruvate oxidase
species: Aerococcus viridans [TaxId: 1377]

Probab=96.41  E-value=0.026  Score=46.13  Aligned_cols=157  Identities=11%  Similarity=-0.023  Sum_probs=93.6

Q ss_pred             ccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeeEEe
Q 020510           35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVVE  113 (325)
Q Consensus        35 ~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~  113 (325)
                      ++++..+++.+.|.+.   +-+-++--+...    ...+.+.|.++-..=+|+.+ -.|+++.-+|.|.|+. |...++.
T Consensus         2 ~~i~~~~~i~~~L~~~---GV~~vFgipG~~----~~~l~dal~~~~~~i~~i~~-r~E~~A~~~A~gyar~tg~~gv~~   73 (184)
T d2djia2           2 NKINIGLAVMKILESW---GADTIYGIPSGT----LSSLMDAMGEEENNVKFLQV-KHEEVGAMAAVMQSKFGGNLGVTV   73 (184)
T ss_dssp             CEEEHHHHHHHHHHHT---TCCEEEECCCTT----THHHHTTSSSTTCCCEEEEC-SSHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CceeHHHHHHHHHHHC---CCCEEEEECChh----HHHHHHHHHhccCCcEEEEe-cCCcchHHHHHhhhhcccCcceee
Confidence            5677888888877653   445455443211    12222334322212377776 7899999999999987 4444443


Q ss_pred             cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCC--CCCCCCcchHHHHHHhcCCCcEEEeeCCHHHHHHHH
Q 020510          114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLL  191 (325)
Q Consensus       114 ~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l  191 (325)
                      +.....+.-++.-|.+.  +.       ...|++++...-..  .+.+..|......+++.+-. ..+...+++++..++
T Consensus        74 ~t~GpG~~n~~~gl~~A--~~-------~~~Pvl~i~g~~~~~~~~~~~~Q~~d~~~~~~~itk-~~~~v~~~~~~~~~~  143 (184)
T d2djia2          74 GSGGPGASHLINGLYDA--AM-------DNIPVVAILGSRPQRELNMDAFQELNQNPMYDHIAV-YNRRVAYAEQLPKLV  143 (184)
T ss_dssp             ECTTHHHHTTHHHHHHH--HH-------HTCCEEEEEEESCGGGTTTTCTTCCCCHHHHHTTCS-EEEECCSGGGHHHHH
T ss_pred             ccccccccchhHhHHHH--HH-------hCccceeecccchhhHhhcCcccccccccchhhhcc-eeeccccchhhHHHH
Confidence            33333455555556542  21       57898887543222  12222221122478888865 356777888888888


Q ss_pred             HHhHh----CCCcEEEEeCccc
Q 020510          192 KAAIR----DPDPVVFLENELL  209 (325)
Q Consensus       192 ~~a~~----~~~Pv~ir~~~~l  209 (325)
                      +.|++    .++||+|-.+..+
T Consensus       144 ~~A~~~a~~~rGPv~i~iP~Dv  165 (184)
T d2djia2         144 DEAARMAIAKRGVAVLEVPGDF  165 (184)
T ss_dssp             HHHHHHHHHTTSEEEEEEETTG
T ss_pred             HHHHHHHhCCCCCEEEEeCchh
Confidence            88776    3689999766553

>d2ez9a2 c.36.1.5 (A:9-182) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Pyruvate oxidase
species: Lactobacillus plantarum [TaxId: 1590]

Probab=96.27  E-value=0.051  Score=43.78  Aligned_cols=154  Identities=12%  Similarity=-0.008  Sum_probs=86.3

Q ss_pred             ccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeeEEecc
Q 020510           37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVVEFM  115 (325)
Q Consensus        37 ~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~~~  115 (325)
                      ++..+++.+.|.+   .+-+.++.-+..    ....+.+.|.++-+.=+++.+ ..|+++.-+|.|.++. |+..++.+.
T Consensus         3 m~~~~~i~~~L~~---~Gv~~vFgipG~----~~~~l~dal~~~~~~i~~i~~-r~E~~A~~~A~gyar~tgk~gv~~~t   74 (174)
T d2ez9a2           3 ILAGAAVIKVLEA---WGVDHLYGIPGG----SINSIMDALSAERDRIHYIQV-RHEEVGAMAAAADAKLTGKIGVCFGS   74 (174)
T ss_dssp             EEHHHHHHHHHHH---TTCCEEEECCCG----GGHHHHHHHHHTTTTSEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEEC
T ss_pred             chHHHHHHHHHHH---CCCCEEEEECCH----hHHHHHHHHHhcCCCcEEEEe-cccchhHHHHHHHHhhcCceeEEeec
Confidence            3445566655544   244545543311    122333445443312366665 8999999999999977 666566554


Q ss_pred             cccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCC--CCCCCCcchHHHHHHhcCCCcEEEeeCCHHHHHHHHHH
Q 020510          116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKA  193 (325)
Q Consensus       116 ~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~  193 (325)
                      ....+.-++.-+.+  |+.       .+.|++++..+-..  .+.+..|......+++.+-.. .+...++.++...++.
T Consensus        75 ~GpG~~N~~~gl~~--A~~-------~~~P~l~i~g~~~~~~~~~~~~Q~~d~~~~~~~itk~-~~~v~~~~~~~~~i~~  144 (174)
T d2ez9a2          75 AGPGGTHLMNGLYD--ARE-------DHVPVLALIGQFGTTGMNMDTFQEMNENPIYADVADY-NVTAVNAATLPHVIDE  144 (174)
T ss_dssp             TTHHHHTTHHHHHH--HHH-------TTCCEEEEEEECCTTTTTSCCTTCCCCHHHHTTTCSE-EEECCCSTTHHHHHHH
T ss_pred             ccccccchhhhHHH--HHh-------cCccceeeeccccccccCccccccchhhhhhcccccc-ccccccHHHHHHHHHH
Confidence            44445555555544  332       57898887643222  223332212224788888653 3445565555555555


Q ss_pred             hHh----CCCcEEEEeCcc
Q 020510          194 AIR----DPDPVVFLENEL  208 (325)
Q Consensus       194 a~~----~~~Pv~ir~~~~  208 (325)
                      |++    .++||+|-.+..
T Consensus       145 A~~~A~~~pGPv~l~iP~D  163 (174)
T d2ez9a2         145 AIRRAYAHQGVAVVQIPVD  163 (174)
T ss_dssp             HHHHHHHHTSEEEEEEETT
T ss_pred             HHHHHhCCCCCEEEEeCcc
Confidence            554    579999976654

>d1q6za2 c.36.1.5 (A:2-181) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Benzoylformate decarboxylase
species: Pseudomonas putida [TaxId: 303]

Probab=96.05  E-value=0.021  Score=46.50  Aligned_cols=115  Identities=18%  Similarity=0.153  Sum_probs=72.7

Q ss_pred             ceeechhhHHHHHHHHHHHhcc-CCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCC--CCCCCC
Q 020510           85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGAQ  161 (325)
Q Consensus        85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~G~t  161 (325)
                      ++|.+ ..|++++.+|.|.|+. |+..++.+.....+.-++.-|.+  |+.       ...|++++...-..  .+.+..
T Consensus        39 ~~i~~-rhE~~A~~mA~gyar~tgk~~v~~~~~GpG~~n~~~gl~~--A~~-------~~~Pvlvi~g~~~~~~~g~~~~  108 (180)
T d1q6za2          39 RYILA-LQEACVVGIADGYAQASRKPAFINLHSAAGTGNAMGALSN--AWN-------SHSPLIVTAGQQTRAMIGVEAL  108 (180)
T ss_dssp             EEEEC-SSHHHHHHHHHHHHHHHTSCEEEEEEHHHHHHHTHHHHHH--HHH-------TTCCEEEEEEECCHHHHTTTCT
T ss_pred             eEEEE-ccchhHHHHHHHHhhhccCcceEEeccccccccccceeHh--hhh-------cccceeeecccccccccccccc
Confidence            45554 7899999999999988 55545544333344444454543  222       57898887532111  233444


Q ss_pred             cchHH-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHh-----CCCcEEEEeCcccc
Q 020510          162 HSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELLY  210 (325)
Q Consensus       162 Hs~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~ir~~~~l~  210 (325)
                      |+..+ ..+++.+-.. .+.+.+++++...++.|++     ..+||||-.+..+.
T Consensus       109 ~q~~D~~~~~~~~tK~-~~~v~~~~~i~~~l~~A~~~a~~~~~GPv~l~iP~D~~  162 (180)
T d1q6za2         109 LTNVDAANLPRPLVKW-SYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDW  162 (180)
T ss_dssp             TCCTTGGGSSTTSCSC-EECCSSGGGHHHHHHHHHHHHHSSSCCCEEEEEEGGGT
T ss_pred             chhhheeecccccccc-cccCCCHHHHHHHHHHHHHHHhcCCCccEEEEcChhHh
Confidence            52223 3778877654 4677888888888888876     25799998776544

>d1t9ba2 c.36.1.5 (A:89-263) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Acetohydroxyacid synthase catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.90  E-value=0.063  Score=43.20  Aligned_cols=154  Identities=14%  Similarity=0.063  Sum_probs=88.9

Q ss_pred             cccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeeEEec
Q 020510           36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVVEF  114 (325)
Q Consensus        36 ~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~~  114 (325)
                      .++..+++.+.|.+.   +-+.|+-.+..    +...+.+.+.++- .-|++. ...|++++-+|.|.|+. |...++.+
T Consensus         3 ~mtg~~~l~~~L~~~---Gi~~vFgipG~----~~~~l~~al~~~~-~~~~i~-~~~E~~A~~~A~gyar~tg~~~v~~~   73 (175)
T d1t9ba2           3 GLTGGQIFNEMMSRQ---NVDTVFGYPGG----AILPVYDAIHNSD-KFNFVL-PKHEQGAGHMAEGYARASGKPGVVLV   73 (175)
T ss_dssp             TCBHHHHHHHHHHHT---TCCEEEECCCG----GGHHHHHHTTTCS-SSEEEC-CSSHHHHHHHHHHHHHHHSSCEEEEE
T ss_pred             cEEHHHHHHHHHHHC---CCCEEEEcCCh----hHHHHHHHHhhcc-cceEEE-ecCchhHHHHHHHHHHHhCCceEEEE
Confidence            356677777777653   34444443311    1112223332222 234666 58999999999999988 65555544


Q ss_pred             ccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCCCcchHHHHHHhcCCCcEEEeeCCHHHHHHHHH
Q 020510          115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLK  192 (325)
Q Consensus       115 ~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~  192 (325)
                      .....+.-++.-+.+  |+.       .+.|++++...-...  +.+..+......+++.+-.. .....++.++...++
T Consensus        74 t~GpG~~n~~~gl~~--A~~-------~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l~~~~tk~-~~~v~~~~~~~~~l~  143 (175)
T d1t9ba2          74 TSGPGATNVVTPMAD--AFA-------DGIPMVVFTGQVPTSAIGTDAFQEADVVGISRSCTKW-NVMVKSVEELPLRIN  143 (175)
T ss_dssp             CSTHHHHTTHHHHHH--HHH-------HTCCEEEEEEECCTTTTTSCCTTCCCHHHHTGGGSSE-EEECCSGGGHHHHHH
T ss_pred             ecCcHHHHHHHHHHH--HHH-------cCCCEEEEecCCChhhcCCCccccccHhHhcccceee-eEecCCHHHHHHHHH
Confidence            333345555555544  222       579988876432222  22222212334788887553 456777777777777


Q ss_pred             HhHh-----CCCcEEEEeCcc
Q 020510          193 AAIR-----DPDPVVFLENEL  208 (325)
Q Consensus       193 ~a~~-----~~~Pv~ir~~~~  208 (325)
                      .|++     ..+||+|-.+..
T Consensus       144 ~A~~~a~~~~~GPv~l~iP~D  164 (175)
T d1t9ba2         144 EAFEIATSGRPGPVLVDLPKD  164 (175)
T ss_dssp             HHHHHHHSSSCCEEEEEEEHH
T ss_pred             HHHHHHhcCCCccEEEEcChh
Confidence            7666     257999976654

>d2ji7a3 c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Oxalyl-CoA decarboxylase
species: Oxalobacter formigenes [TaxId: 847]

Probab=95.78  E-value=0.021  Score=46.44  Aligned_cols=152  Identities=18%  Similarity=0.210  Sum_probs=85.1

Q ss_pred             cccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhH--HHHHHHHHHHhccCCeeEEe
Q 020510           36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITE--AGFTGIGVGAAYYGLKPVVE  113 (325)
Q Consensus        36 ~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE--~~~vg~A~GlA~~G~~p~v~  113 (325)
                      .++...+ -++|.+++.+++|.++++ |.+.   ++.....+.....|.+|++.|.--  -..++.|.|.+..--||+++
T Consensus         5 ~~~~~~~-~~~l~~~~~~~~D~iiv~-dgg~---~~~~~~~~~~~~~p~~~~~~~~~g~mG~~l~~aig~~a~~~~~vv~   79 (183)
T d2ji7a3           5 MMNYSNS-LGVVRDFMLANPDISLVN-EGAN---ALDNTRMIVDMLKPRKRLDSGTWGVMGIGMGYCVAAAAVTGKPVIA   79 (183)
T ss_dssp             CBCHHHH-HHHHHHHHHHCCSSEEEE-ESSH---HHHHHHHHSCCCSTTCEEECTTTTCTTCHHHHHHHHHHHHCSCEEE
T ss_pred             cCCHHHH-HHHHHHHHhcCCCEEEEE-Cchh---HHHHHHHHhccCCCCcEEecCCccccccccchhhhhhcCCcceEEE
Confidence            4555555 567778888888877764 3331   111222333444478999865411  11244455544443456665


Q ss_pred             cccccH--HHHHHHHHHHHHhhccccCCCCccCCEEEEe--CCCCCCC------CCC----C-cchHHHHHHhcCCCcEE
Q 020510          114 FMTFNF--SMQAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAAAG------VGA----Q-HSHCYAAWYASVPGLKV  178 (325)
Q Consensus       114 ~~~~~f--~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~--~~G~~~g------~G~----t-Hs~~~~a~~~~iP~~~V  178 (325)
                      +. .+.  ++-. ..+- .++.        .++|++++.  .+|....      .|-    . +...+..+.++. |+.-
T Consensus        80 i~-GDGsf~~~~-~el~-ta~~--------~~l~i~iiV~NN~g~~~~~q~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~  147 (183)
T d2ji7a3          80 VE-GDSAFGFSG-MELE-TICR--------YNLPVTVIIMNNGGIYKGNEADPQPGVISCTRLTRGRYDMMMEAF-GGKG  147 (183)
T ss_dssp             EE-EHHHHHTTG-GGHH-HHHH--------TTCCEEEEEEECSBSSCSCCCCSBTTBCCTTBCCCCCHHHHHHHT-TCEE
T ss_pred             EE-cCcchhhch-hhhh-hhhh--------ccccchhhhhhhhhhhhhhhccccccccccccccccchhhhhhhc-CCcE
Confidence            54 442  2222 2232 2333        466765553  2232210      111    1 112334666666 7888


Q ss_pred             EeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510          179 LSPYSSEDARGLLKAAIRDPDPVVFL  204 (325)
Q Consensus       179 ~~P~d~~e~~~~l~~a~~~~~Pv~ir  204 (325)
                      +...++.|++..++.+++.++|++|-
T Consensus       148 ~~v~~~~el~~al~~a~~~~~p~lIe  173 (183)
T d2ji7a3         148 YVANTPAELKAALEEAVASGKPCLIN  173 (183)
T ss_dssp             EEECSHHHHHHHHHHHHHHTSCEEEE
T ss_pred             EEeCCHHHHHHHHHHHHhCCCcEEEE
Confidence            89999999999999999999999984

>d1pvda2 c.36.1.5 (A:2-181) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Pyruvate decarboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.75  E-value=0.088  Score=42.43  Aligned_cols=154  Identities=10%  Similarity=-0.010  Sum_probs=82.3

Q ss_pred             cccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEe-c
Q 020510           36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVE-F  114 (325)
Q Consensus        36 ~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~-~  114 (325)
                      +++..+++.+.|.+   ..-+.|+..+...    ...+.+.+.+.- .=+|+.+ -.|++++-+|.|.|+...+|.+. +
T Consensus         2 emt~~~~i~~~L~~---~Gv~~vFgipG~~----~~~l~~al~~~~-~i~~i~~-~~E~~A~~~A~gyar~t~~~~v~~t   72 (180)
T d1pvda2           2 EITLGKYLFERLKQ---VNVNTVFGLPGDF----NLSLLDKIYEVE-GMRWAGN-ANELNAAYAADGYARIKGMSCIITT   72 (180)
T ss_dssp             EEEHHHHHHHHHHH---TTCCEEEECCCTT----THHHHHGGGGST-TCEECCC-SCHHHHHHHHHHHHHHHSCEEEEEE
T ss_pred             ccCHHHHHHHHHHH---CCCCEEEEeCCcc----HHHHHHHHHHhc-ceEEeee-cccchhhHHHHHHhhccCCceeeec
Confidence            45666777766654   3455555443211    122223443322 1356664 89999999999999885556543 4


Q ss_pred             ccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCC--CCCC-CCc-c------hHHHHHHhcCCCcEEEeeCCH
Q 020510          115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVG-AQH-S------HCYAAWYASVPGLKVLSPYSS  184 (325)
Q Consensus       115 ~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~G-~tH-s------~~~~a~~~~iP~~~V~~P~d~  184 (325)
                      ..+ ...-++.-+.+  |+.       ..+|++++...-..  .+.+ ..| .      .....+++.+-... +...++
T Consensus        73 ~Gp-G~~N~~~gl~~--A~~-------~~~P~l~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~-~~v~~~  141 (180)
T d1pvda2          73 FGV-GELSALNGIAG--SYA-------EHVGVLHVVGVPSISSQAKQLLLHHTLGNGDFTVFHRMSANISETT-AMITDI  141 (180)
T ss_dssp             TTH-HHHHHHHHHHH--HHH-------HTCCEEEEEEECCCC--------CCSCSSSCSSHHHHHHGGGCSEE-EECCCT
T ss_pred             ccc-ccchhhHHHHH--HHh-------hcccEEEEeccCCcccccccceeeecccccchhHHHHHhhhheeEE-EEcCCH
Confidence            444 34455555544  322       57898887532111  1111 122 1      12346778775543 333444


Q ss_pred             HHH----HHHHHHhHhCCCcEEEEeCccc
Q 020510          185 EDA----RGLLKAAIRDPDPVVFLENELL  209 (325)
Q Consensus       185 ~e~----~~~l~~a~~~~~Pv~ir~~~~l  209 (325)
                      +++    .++++.|...++||+|-.++.+
T Consensus       142 ~~~~~~i~~A~~~a~~~~gPv~i~iP~dv  170 (180)
T d1pvda2         142 ATAPAEIDRCIRTTYVTQRPVYLGLPANL  170 (180)
T ss_dssp             TTHHHHHHHHHHHHHHHTSCEEEEEETTT
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEECCccc
Confidence            444    4455555445799999766553

>d2ihta2 c.36.1.5 (A:12-197) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Carboxyethylarginine synthase
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=95.65  E-value=0.1  Score=42.30  Aligned_cols=114  Identities=11%  Similarity=-0.069  Sum_probs=74.2

Q ss_pred             ceeechhhHHHHHHHHHHHhcc-CCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCC--CCCCCC
Q 020510           85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGAQ  161 (325)
Q Consensus        85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~G~t  161 (325)
                      +|+.+ ..|+++.-+|.|.|+. |...++.+.....+.-++.-|.+  |+.       .+.|++++...-..  ......
T Consensus        39 ~~i~~-~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~n~~~gl~~--A~~-------~~~Pvl~i~g~~~~~~~~~~~~  108 (186)
T d2ihta2          39 DFVLT-RHEFTAGVAADVLARITGRPQACWATLGPGMTNLSTGIAT--SVL-------DRSPVIALAAQSESHDIFPNDT  108 (186)
T ss_dssp             EEEEC-SSHHHHHHHHHHHHHHHCSCEEEEECTTHHHHHHHHHHHH--HHH-------HTCCEEEEEEESCGGGCCTTTS
T ss_pred             EEEEE-ccchhhHHHHHHHhhccCCcceeeccccccccchhhhhhH--HHH-------hhccceeeeccCcchhcccccc
Confidence            67765 7899999999999977 76666655434455555565544  322       57898887532121  122334


Q ss_pred             cchHH-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHhC-----CCcEEEEeCccc
Q 020510          162 HSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL  209 (325)
Q Consensus       162 Hs~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~ir~~~~l  209 (325)
                      |+..+ ..+++.+-. ......+++++...++.|++.     .+||+|-.+..+
T Consensus       109 ~q~~d~~~~~~~~tk-~~~~v~~~~~i~~~l~~A~~~a~s~~~GPv~l~iP~Di  161 (186)
T d2ihta2         109 HQCLDSVAIVAPMSK-YAVELQRPHEITDLVDSAVNAAMTEPVGPSFISLPVDL  161 (186)
T ss_dssp             TTCCCHHHHHGGGSS-EEEECCSGGGHHHHHHHHHHHHTBSSCCCEEEEEEHHH
T ss_pred             ccccccccccCCcee-eccccCCchhhhhHHHHHHHHHhcCCCeeEEEEeCHhH
Confidence            52223 488988854 356677888888888877762     479999866543

>d1zpda2 c.36.1.5 (A:2-187) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=94.94  E-value=0.21  Score=40.33  Aligned_cols=153  Identities=16%  Similarity=0.095  Sum_probs=83.5

Q ss_pred             cHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeeEEeccc
Q 020510           38 MVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMT  116 (325)
Q Consensus        38 s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~~~~  116 (325)
                      |..+.+.+.|.+.   .-+.|+--+..    +...+.+.+.+.- .=||+.+ ..|+++..+|.|.|+. |+-.++.+..
T Consensus         3 Tv~~~l~~~L~~~---Gv~~vFgvpG~----~~~~l~dal~~~~-~i~~v~~-rhE~~A~~mA~gyar~tg~~~v~~t~G   73 (186)
T d1zpda2           3 TVGTYLAERLVQI---GLKHHFAVAGD----YNLVLLDNLLLNK-NMEQVYC-CNELNCGFSAEGYARAKGAAAAVVTYS   73 (186)
T ss_dssp             BHHHHHHHHHHHT---TCSEEEECCCT----TTHHHHHHHHTCT-TSEEEEC-SSHHHHHHHHHHHHHHHSCEEEEECTT
T ss_pred             eHHHHHHHHHHHC---CCCEEEEeCCh----hHHHHHHHHHHcC-CceEeee-ccccceehhhhhhhhccccceeEeecc
Confidence            4455555555543   34444433211    1222334444333 2367775 8999999999999987 6544555554


Q ss_pred             ccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC-CC-CCCCCC--Ccc-----h-HHHHHHhcCCCcEEEeeCCHHH
Q 020510          117 FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GA-AAGVGA--QHS-----H-CYAAWYASVPGLKVLSPYSSED  186 (325)
Q Consensus       117 ~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~-~~g~G~--tHs-----~-~~~a~~~~iP~~~V~~P~d~~e  186 (325)
                      + .+.-+..-|.+  |+.       .+.|++++... .. ..+.|.  +|.     . ....+++.+-.. .....++++
T Consensus        74 p-G~~N~~~gl~~--A~~-------~~~Pvl~isg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtk~-~~~v~~~~~  142 (186)
T d1zpda2          74 V-GALSAFDAIGG--AYA-------ENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAA-AEAIYTPEE  142 (186)
T ss_dssp             T-THHHHHHHHHH--HHH-------TTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCHHHHHHGGGCSC-EEEECSGGG
T ss_pred             c-cchhhhhhhhh--hhh-------cccceEEEecccCcccccCCCcceeecCCcchhhhhhccCCceee-eeEcCCHHH
Confidence            4 44556666654  322       57898887532 11 112221  121     1 123788877543 344455555


Q ss_pred             HHHHHHHhHh----CCCcEEEEeCcccc
Q 020510          187 ARGLLKAAIR----DPDPVVFLENELLY  210 (325)
Q Consensus       187 ~~~~l~~a~~----~~~Pv~ir~~~~l~  210 (325)
                      +...++.|++    .++||||-.+..+.
T Consensus       143 ~~~~i~~A~~~A~~~~~PV~l~iP~Dv~  170 (186)
T d1zpda2         143 APAKIDHVIKTALREKKPVYLEIACNIA  170 (186)
T ss_dssp             HHHHHHHHHHHHHHHTCCEEEEEETTST
T ss_pred             HHHHHHHHHHHHhhCCCCEEEECCcchh
Confidence            5555555544    46799998766543

>d1ybha2 c.36.1.5 (A:86-280) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Acetohydroxyacid synthase catalytic subunit
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

Probab=94.92  E-value=0.27  Score=40.06  Aligned_cols=155  Identities=17%  Similarity=0.082  Sum_probs=90.2

Q ss_pred             ccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeeEEe
Q 020510           35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVVE  113 (325)
Q Consensus        35 ~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~  113 (325)
                      .+++-.+++.+.|.+.   .-+.++..+..    ....+.+.|.+ .+.-+++ ....|++++-+|-|.|+. |..-++.
T Consensus        10 ~~~~Gad~i~~~L~~~---Gv~~vFgipG~----~~~~l~~al~~-~~~i~~i-~~rhE~~A~~mAdgyar~tg~~gv~~   80 (195)
T d1ybha2          10 QPRKGADILVEALERQ---GVETVFAYPGG----ASMEIHQALTR-SSSIRNV-LPRHEQGGVFAAEGYARSSGKPGICI   80 (195)
T ss_dssp             CCEEHHHHHHHHHHTT---TCCEEEECCCG----GGHHHHHHHHH-CSSCEEC-CCSSHHHHHHHHHHHHHHHSSCEEEE
T ss_pred             CCccHHHHHHHHHHHC---CCCEEEEcCCc----cHHHHHHHHhh-hcceeec-ccccHHHHHHHHHHHHHHHCCCeEEE
Confidence            5677788888887653   33444443311    11223344433 3123444 458999999999999977 5444443


Q ss_pred             cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCC--CCCCCCcchHHHHHHhcCCCcEEEeeCCHHHHHHHH
Q 020510          114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLL  191 (325)
Q Consensus       114 ~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l  191 (325)
                      +.....+.-++.-|.+  |+.       ...|++++..+-..  .+.+..+......+++.+-. ..+...+++++...+
T Consensus        81 ~t~GpG~~N~~~gl~~--A~~-------~~~Pvlvi~g~~~~~~~~~~~~q~~d~~~~~~~~tk-~~~~v~~~~~~~~~~  150 (195)
T d1ybha2          81 ATSGPGATNLVSGLAD--ALL-------DSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITK-HNYLVMDVEDIPRII  150 (195)
T ss_dssp             ECTTHHHHTTHHHHHH--HHH-------HTCCEEEEEEECCGGGTTTTCTTCCCHHHHHGGGSS-EEEECCCGGGHHHHH
T ss_pred             EecChHHHHHHHHHHH--HHH-------cCCCEEEEecCCcHHHhccCcccccchhhhhccccc-chhhcchHhhcchHH
Confidence            3333345555555544  221       57898887543222  22333332233478887754 346777888877778


Q ss_pred             HHhHh-----CCCcEEEEeCcc
Q 020510          192 KAAIR-----DPDPVVFLENEL  208 (325)
Q Consensus       192 ~~a~~-----~~~Pv~ir~~~~  208 (325)
                      +.|++     ..+||||-.+..
T Consensus       151 ~~A~~~a~~~r~GPV~l~iP~D  172 (195)
T d1ybha2         151 EEAFFLATSGRPGPVLVDVPKD  172 (195)
T ss_dssp             HHHHHHHHSSSCCEEEEEEEHH
T ss_pred             HHHHHHHhcCCCCcEEEECChH
Confidence            77776     257999976654

>d1ozha2 c.36.1.5 (A:7-187) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Catabolic acetolactate synthase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=94.72  E-value=0.18  Score=40.59  Aligned_cols=155  Identities=15%  Similarity=0.084  Sum_probs=89.7

Q ss_pred             cccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeeEEec
Q 020510           36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVVEF  114 (325)
Q Consensus        36 ~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~~  114 (325)
                      .++-.+++.+.|.+.   +-+.++..+...    ...+.+.|.+ . .=+++.+ ..|+++.-+|.|.|+. |...++.+
T Consensus         4 ~~~G~d~l~~~L~~~---Gv~~vFg~pG~~----~~~l~~al~~-~-~i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~~   73 (181)
T d1ozha2           4 WAHGADLVVSQLEAQ---GVRQVFGIPGAK----IDKVFDSLLD-S-SIRIIPV-RHEANAAFMAAAVGRITGKAGVALV   73 (181)
T ss_dssp             ESCHHHHHHHHHHHH---TCCEEEEECCTT----THHHHHHGGG-S-SSEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEE
T ss_pred             cccHHHHHHHHHHHC---CCCEEEEeCcHh----HHHHHHHHHh-h-hcccccc-cccHHHHHHHHHHHHhcCCccceee
Confidence            455677788877654   334444333111    1233344432 3 2356664 7999999999999988 65544444


Q ss_pred             ccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCC-CCcch-HHHHHHhcCCCcEEEeeCCHHHHHHHHH
Q 020510          115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVG-AQHSH-CYAAWYASVPGLKVLSPYSSEDARGLLK  192 (325)
Q Consensus       115 ~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G-~tHs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~  192 (325)
                      .....+.-+..-|.+  |+.       .+.|++++...-.....| ..|+. ....+++.+-. ..+...+++++..+++
T Consensus        74 t~GpG~~n~~~gi~~--A~~-------~~~Pvl~isg~~~~~~~~~~~~q~~d~~~~~~~~tk-~~~~v~~~~~~~~~l~  143 (181)
T d1ozha2          74 TSGPGCSNLITGMAT--ANS-------EGDPVVALGGAVKRADKAKQVHQSMDTVAMFSPVTK-YAIEVTAPDALAEVVS  143 (181)
T ss_dssp             CSTHHHHTTHHHHHH--HHH-------HTCCEEEEEEECCTTTC------CCCHHHHHGGGCS-EEEECCSGGGHHHHHH
T ss_pred             ccchhhhhhhhhHHH--Hhh-------cCCceeeeecccchhhccccccccccccccccccch-heeccCchhHHHHHHH
Confidence            333345555555644  222       579988876432222222 12322 33488888865 3456677888877777


Q ss_pred             HhHh-----CCCcEEEEeCcccc
Q 020510          193 AAIR-----DPDPVVFLENELLY  210 (325)
Q Consensus       193 ~a~~-----~~~Pv~ir~~~~l~  210 (325)
                      .|++     ..+||||-.+..+.
T Consensus       144 ~A~~~A~~~~~GPV~l~iP~Dv~  166 (181)
T d1ozha2         144 NAFRAAEQGRPGSAFVSLPQDVV  166 (181)
T ss_dssp             HHHHHHHSSSCCEEEEEEEHHHH
T ss_pred             HHHHHHhhCCCccEEEEcChHHh
Confidence            7776     25799998765543

>d1ovma2 c.36.1.5 (A:3-180) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Indole-3-pyruvate decarboxylase
species: Enterobacter cloacae [TaxId: 550]

Probab=94.03  E-value=0.86  Score=35.99  Aligned_cols=152  Identities=9%  Similarity=0.004  Sum_probs=81.4

Q ss_pred             ccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEe-cc
Q 020510           37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVE-FM  115 (325)
Q Consensus        37 ~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~-~~  115 (325)
                      .+..+++.+.|.+.   +-+.++..+..    ....+.+.+.++- .=+++.+ -.|++++-+|.|.|+...+|.+. +.
T Consensus         3 ~tvad~iv~~L~~~---GV~~vFg~pG~----~~~~l~~al~~~~-~i~~i~~-rhE~~A~~~A~gyar~t~~~~v~~t~   73 (178)
T d1ovma2           3 YCVADYLLDRLTDC---GADHLFGVPGD----YNLQFLDHVIDSP-DICWVGC-ANELNASYAADGYARCKGFAALLTTF   73 (178)
T ss_dssp             CBHHHHHHHHHHHT---TCCEEEECCCG----GGHHHHHHHHHCS-SCEEEEC-SSHHHHHHHHHHHHHHHSCEEEEEET
T ss_pred             ccHHHHHHHHHHHC---CCCEEEEeCCh----hHHHHHHHHHhCC-CeEEEEe-ccchhhHHHHHHHHhcCCCceEEeec
Confidence            45666666666553   44444443311    1223334455433 2356664 79999999999999886556443 44


Q ss_pred             cccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCC----CCCCCCc------chHHHHHHhcCCCcEEEeeCCHH
Q 020510          116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA----AGVGAQH------SHCYAAWYASVPGLKVLSPYSSE  185 (325)
Q Consensus       116 ~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~----~g~G~tH------s~~~~a~~~~iP~~~V~~P~d~~  185 (325)
                      .+ .+.-++.-|.+  |+.       ...|++++...-..    .+....|      .+....+++.+....-. -.+++
T Consensus        74 Gp-G~~n~~~gl~~--A~~-------~~~Pvl~isg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~-v~~~~  142 (178)
T d1ovma2          74 GV-GELSAMNGIAG--SYA-------EHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHFYHMSEPITVAQAV-LTEQN  142 (178)
T ss_dssp             TH-HHHHTHHHHHH--HHH-------TTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCSHHHHHTGGGCSEEEE-CCTTT
T ss_pred             cc-cccccchhhhH--HHh-------cCccEEEEecCCCchhhccccccccccccchhhhccccccccceeEEE-eCcHH
Confidence            33 34445555544  221       57998887531111    1111112      12334788877654433 23344


Q ss_pred             HHHHHHH---HhHhCCCcEEEEeCcc
Q 020510          186 DARGLLK---AAIRDPDPVVFLENEL  208 (325)
Q Consensus       186 e~~~~l~---~a~~~~~Pv~ir~~~~  208 (325)
                      +...+.+   .+....+|++|-.+..
T Consensus       143 ~~~~~~~~~~~a~~~~~Pv~i~iP~D  168 (178)
T d1ovma2         143 ACYEIDRVLTTMLRERRPGYLMLPAD  168 (178)
T ss_dssp             HHHHHHHHHHHHHHHTCCEEEEEEHH
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEEChH
Confidence            4444444   4444578999976544

>d2ji7a2 c.36.1.5 (A:7-194) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Oxalyl-CoA decarboxylase
species: Oxalobacter formigenes [TaxId: 847]

Probab=93.00  E-value=1.6  Score=34.81  Aligned_cols=151  Identities=13%  Similarity=-0.002  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeeEEecccc
Q 020510           39 VREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTF  117 (325)
Q Consensus        39 ~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~~~~~  117 (325)
                      -.+++.+.|.+   ..-+.++..+...    ...+.+.+. +. +-+|+.+ ..|+++.-+|.|.|+. |...++.+...
T Consensus         6 G~~~i~~~L~~---~GV~~vFg~pG~~----~~~~~~al~-~~-~i~~i~~-~hE~~A~~~A~gyar~tg~~~v~~~t~G   75 (188)
T d2ji7a2           6 GFHVLIDALKM---NDIDTMYGVVGIP----ITNLARMWQ-DD-GQRFYSF-RHEQHAGYAASIAGYIEGKPGVCLTVSA   75 (188)
T ss_dssp             HHHHHHHHHHH---TTCCEEEECCCTT----THHHHHHHH-HT-TCEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECSH
T ss_pred             HHHHHHHHHHH---CCCCEEEEeCCHH----HHHHHHHHH-hC-CCEEEEe-cccchhhhHHHHHHhhhcccceeecccc
Confidence            45666666654   3444455443221    122333343 34 3477775 7999999999999987 55444433223


Q ss_pred             cHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCC----CCCCCCcchHHHHHHhcCCCcEEEeeCCHHHHHHHHHH
Q 020510          118 NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA----AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKA  193 (325)
Q Consensus       118 ~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~----~g~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~  193 (325)
                      ..+.-+..-|.+  |+.       .+.|++++......    ...+..|......+++.+-.. .+...+++++...++.
T Consensus        76 pG~~n~~~gl~~--A~~-------~~~Pvl~i~g~~~~~~~~~~~~~~q~~d~~~~~~~~tk~-~~~v~~~~~i~~~~~~  145 (188)
T d2ji7a2          76 PGFLNGVTSLAH--ATT-------NCFPMILLSGSSEREIVDLQQGDYEEMDQMNVARPHCKA-SFRINSIKDIPIGIAR  145 (188)
T ss_dssp             HHHHHHHHHHHH--HHH-------HTCCEEEEEEECCHHHHHTTCCCTTCCCHHHHTGGGSSE-EEECCSGGGHHHHHHH
T ss_pred             ccccccchhHHH--HHH-------hcccceEEeccCchhhhcccccccceeeeecccCCcchh-hhccccccccHHHHHH
Confidence            344445555544  332       57898887532111    112222211224788887653 4555677777776666


Q ss_pred             hHh-----CCCcEEEEeCccc
Q 020510          194 AIR-----DPDPVVFLENELL  209 (325)
Q Consensus       194 a~~-----~~~Pv~ir~~~~l  209 (325)
                      |++     ..+||||-.+..+
T Consensus       146 A~~~a~~~~~GPV~l~iP~dv  166 (188)
T d2ji7a2         146 AVRTAVSGRPGGVYVDLPAKL  166 (188)
T ss_dssp             HHHHHHSSSCCEEEEEEEHHH
T ss_pred             HHHHHhCCCCceEEEEcChhH
Confidence            665     2479999766543

>d2ihta3 c.36.1.9 (A:375-572) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Carboxyethylarginine synthase
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=91.69  E-value=0.28  Score=39.94  Aligned_cols=111  Identities=14%  Similarity=0.057  Sum_probs=61.8

Q ss_pred             CCceeechhh--HHHHHHHHHHHhcc-CCeeEEecccccH-HHHHHHHHHHHHhhccccCCCCccCCEEEEeC-CCCCC-
Q 020510           83 PERVLDTPIT--EAGFTGIGVGAAYY-GLKPVVEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAA-  156 (325)
Q Consensus        83 p~R~i~~GIa--E~~~vg~A~GlA~~-G~~p~v~~~~~~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~~-  156 (325)
                      |.+|+..+--  =-..+..|.|++++ .-++++++. .+. .+-....+-. ++.        .++|++++.. ++..+ 
T Consensus        52 p~~~~~~~~~g~mG~~lp~aiGa~~a~p~~~Vv~i~-GDGsf~~~~~el~t-~~~--------~~lpi~ivV~NN~~~g~  121 (198)
T d2ihta3          52 PFGFLTSAGCSSFGYGIPAAIGAQMARPDQPTFLIA-GDGGFHSNSSDLET-IAR--------LNLPIVTVVVNNDTNGL  121 (198)
T ss_dssp             TTSEECCSSSCCTTCHHHHHHHHHHHSTTSCEEEEE-EHHHHHHTGGGHHH-HHH--------HTCCCEEEEEECSBCHH
T ss_pred             CCeEEecCCcccchhHHHHHHHHhhhhcccceEeec-ccccccccchhhhh-hhh--------hhhhhhHHHhhccccce
Confidence            7888874431  02235677776665 355666554 443 1222223322 443        3566554432 22210 


Q ss_pred             --------CCCC----C-cch-HHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510          157 --------GVGA----Q-HSH-CYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL  204 (325)
Q Consensus       157 --------g~G~----t-Hs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir  204 (325)
                              ..+.    + ... .+..+..++ |+.-+...+++|+...++.+++.++|++|-
T Consensus       122 i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lIe  182 (198)
T d2ihta3         122 IELYQNIGHHRSHDPAVKFGGVDFVALAEAN-GVDATRATNREELLAALRKGAELGRPFLIE  182 (198)
T ss_dssp             HHHHHHHHHSSCCGGGTBCCCCCHHHHHHHT-TCEEEECCSHHHHHHHHHHHHTSSSCEEEE
T ss_pred             EeeeeccccccccccccccCCcchhhhcccc-CceEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence                    0010    1 111 123444444 677788899999999999999999999985

>d1q6za3 c.36.1.9 (A:342-524) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Benzoylformate decarboxylase
species: Pseudomonas putida [TaxId: 303]

Probab=91.21  E-value=0.35  Score=38.71  Aligned_cols=147  Identities=17%  Similarity=0.189  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhH-HHHHHHHHHHhccC-CeeEEeccccc
Q 020510           41 EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITE-AGFTGIGVGAAYYG-LKPVVEFMTFN  118 (325)
Q Consensus        41 ~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE-~~~vg~A~GlA~~G-~~p~v~~~~~~  118 (325)
                      ..+.++|.+++.+| .+++.  |.+...  +.. ..+.+...|.+|+..+-.= -..++.|.|++++- -++++++. .+
T Consensus        15 ~~~~~~l~~~l~~d-~ivv~--d~G~~~--~~~-~~~~~~~~~~~~~~~~~g~mG~~~p~AiGa~la~p~~~vv~i~-GD   87 (183)
T d1q6za3          15 ETVFDTLNDMAPEN-AIYLN--ESTSTT--AQM-WQRLNMRNPGSYYFCAAGGLGFALPAAIGVQLAEPERQVIAVI-GD   87 (183)
T ss_dssp             HHHHHHHHHHSCTT-CEEEE--ECTTSH--HHH-HHHCCCCSSSCEEECTTCCTTSHHHHHHHHHHHCTTSCEEEEE-EH
T ss_pred             HHHHHHHHHhCCCC-cEEEE--cCCchH--HHH-HHHHhhccccccccccCCCcccchhHHHhhhhhccccceEEec-cc
Confidence            45666777776554 45544  334221  111 2222223367777653210 12455666766653 56666654 44


Q ss_pred             HH-HHHHHHHHHHHhhccccCCCCccCCEEEEe-CC-CCC---------CCC---CCC-cchHHHHHHhcCCCcEEEeeC
Q 020510          119 FS-MQAIDHIINSAAKSNYMSSGQISVPIVFRG-PN-GAA---------AGV---GAQ-HSHCYAAWYASVPGLKVLSPY  182 (325)
Q Consensus       119 f~-~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~-~~-G~~---------~g~---G~t-Hs~~~~a~~~~iP~~~V~~P~  182 (325)
                      .. +-....+-+ +..        .++|++++. .+ +.+         .+.   +.. +...+..+.++. |++.+...
T Consensus        88 G~f~~~~~el~t-a~~--------~~lpv~~iV~nN~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~  157 (183)
T d1q6za3          88 GSANYSISALWT-AAQ--------YNIPTIFVIMNNGTYGALRWFAGVLEAENVPGLDVPGIDFRALAKGY-GVQALKAD  157 (183)
T ss_dssp             HHHTTTGGGHHH-HHH--------HTCCCEEEEEECSBCHHHHHHHHHHTCCSCCSCBCCCCCHHHHHHHH-TCEEEEES
T ss_pred             cccccccHHHHH-HHH--------hCCCEEEEEEeccccchhhhhhhcccccCcccccCCCccHHHHHHHc-CCEEEEEC
Confidence            31 222222322 333        356655432 22 221         010   110 111234555555 67788889


Q ss_pred             CHHHHHHHHHHhHhCCCcEEEE
Q 020510          183 SSEDARGLLKAAIRDPDPVVFL  204 (325)
Q Consensus       183 d~~e~~~~l~~a~~~~~Pv~ir  204 (325)
                      +++|+...++.+++.++|++|-
T Consensus       158 ~~~el~~al~~a~~~~gp~lie  179 (183)
T d1q6za3         158 NLEQLKGSLQEALSAKGPVLIE  179 (183)
T ss_dssp             SHHHHHHHHHHHHTCSSCEEEE
T ss_pred             CHHHHHHHHHHHHhCCCcEEEE
Confidence            9999999999999999999884

>d1t9ba3 c.36.1.9 (A:461-687) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Acetohydroxyacid synthase catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.32  E-value=1  Score=37.30  Aligned_cols=154  Identities=14%  Similarity=0.125  Sum_probs=81.1

Q ss_pred             ccccHHHHHHHHHHHHHhcCC-cEEEEecCCCCccCccccchhHHHHhCCCceeechhh--HHHHHHHHHHHhccC-Cee
Q 020510           35 KQMMVREALNSALDEEMSADP-KVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPIT--EAGFTGIGVGAAYYG-LKP  110 (325)
Q Consensus        35 ~~~s~~~a~~~~L~~l~~~d~-~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIa--E~~~vg~A~GlA~~G-~~p  110 (325)
                      ..++-. .+.+.|.+++.++. +.+++ .|.+... .+.. .-+.-+- |.+|+..+.-  =...+..|.|.+++. -||
T Consensus         9 ~~i~P~-~~~~~L~~~~~~~~~d~ivv-~D~G~~~-~~~~-~~~~~~~-p~~~i~~~~~g~mG~~~~aaiGa~lA~p~r~   83 (227)
T d1t9ba3           9 SKIKPQ-TVIKKLSKVANDTGRHVIVT-TGVGQHQ-MWAA-QHWTWRN-PHTFITSGGLGTMGYGLPAAIGAQVAKPESL   83 (227)
T ss_dssp             CCBCHH-HHHHHHHHHHHTTCSCEEEE-ECSSHHH-HHHH-HHSCCCS-TTCEECCCSSCCTTCHHHHHHHHHHHCTTSE
T ss_pred             CCcCHH-HHHHHHHHhcccCCCCEEEE-ECCcHHH-HHHH-HHcCCCC-CceEeeecccccchhhHHHHHHHHhcCCCCe
Confidence            344433 34467887777654 44444 4665211 1110 1122233 7788763221  122344556665553 367


Q ss_pred             EEecccccH--HHHHHHHHHHHHhhccccCCCCccCCEEEEe--CCCCC---------CC--CCCCc-c-hHHHHHHhcC
Q 020510          111 VVEFMTFNF--SMQAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAA---------AG--VGAQH-S-HCYAAWYASV  173 (325)
Q Consensus       111 ~v~~~~~~f--~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~--~~G~~---------~g--~G~tH-s-~~~~a~~~~i  173 (325)
                      ++++. .+.  .+.. ..|-. +..        .++|++++.  .++..         .+  ...+. . -.+..+..++
T Consensus        84 Vv~i~-GDGsf~m~~-~EL~T-a~r--------~~l~i~iiV~nN~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~  152 (227)
T d1t9ba3          84 VIDID-GDASFNMTL-TELSS-AVQ--------AGTPVKILILNNEEQGMVTQWQSLFYEHRYSHTHQLNPDFIKLAEAM  152 (227)
T ss_dssp             EEEEE-EHHHHHHHG-GGHHH-HHH--------HTCCCEEEEEECSSCHHHHHHHHHHSTTCCCSCCCCCCCHHHHHHHT
T ss_pred             EEEeC-CCcccccch-HHHHH-Hhh--------cCCceEEEEEecccccchhHHHhhhhccccccccCCCCCHHHHHhhc
Confidence            66654 443  3332 22332 333        356655443  32321         01  11111 1 1234566666


Q ss_pred             CCcEEEeeCCHHHHHHHHHHhHhCCCcEEEEe
Q 020510          174 PGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE  205 (325)
Q Consensus       174 P~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir~  205 (325)
                       |+.-+.-.+++|+..+|+++++.++|++|-.
T Consensus       153 -G~~~~~v~~~~el~~al~~a~~~~~p~lieV  183 (227)
T d1t9ba3         153 -GLKGLRVKKQEELDAKLKEFVSTKGPVLLEV  183 (227)
T ss_dssp             -TCEEEEECSHHHHHHHHHHHHHCSSCEEEEE
T ss_pred             -ccceEeeCCHHHHHHHHHHHHHCCCCEEEEE
Confidence             6777888999999999999999999999853

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=84.07  E-value=0.69  Score=35.01  Aligned_cols=82  Identities=16%  Similarity=0.114  Sum_probs=56.7

Q ss_pred             CcEEEEEechh-------H-HHHHHHHHHHHhcCCcEEEEEe--------------eeccCCCHHHHHHHHhCCCeEEEE
Q 020510          239 KDVTITAFSKI-------V-GLSLKAAEILAKEGISAEVINL--------------RSIRPLDRSTINASVRKTNRLVTV  296 (325)
Q Consensus       239 ~dv~Iia~G~~-------~-~~a~~Aa~~L~~~Gi~~~Vi~~--------------~~l~P~d~~~l~~~~~~~~~vvvv  296 (325)
                      ++++||++|..       + .-+..|++.|+++|+++-+||.              -.+.|+..+.+.+.+++.+.--++
T Consensus         8 kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TVstd~d~aD~lYfePlt~e~v~~Ii~~E~pd~il   87 (127)
T d1a9xa3           8 KSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVL   87 (127)
T ss_dssp             CEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGGGCGGGSSEEECSCCCHHHHHHHHHHHCCSEEE
T ss_pred             CEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhhhcChhhcceeeeecCCHHHHHHHHHHhCcCCeE
Confidence            46777777642       3 4566888899999999888764              345699999999999865421122


Q ss_pred             ecCCCCCC-HHHHHHHHHcCCCccccCC
Q 020510          297 EEGFPQHG-VGAEIWCAFFPPAWLISSN  323 (325)
Q Consensus       297 Ee~~~~GG-lg~~v~~~l~~~~~~~~~~  323 (325)
                         ...|| .+-.++..|.+.|++.+.|
T Consensus        88 ---~~~GGQtalnla~~L~~~giL~~~~  112 (127)
T d1a9xa3          88 ---PTMGGQTALNCALELERQGVLEEFG  112 (127)
T ss_dssp             ---CSSSHHHHHHHHHHHHHTTHHHHHT
T ss_pred             ---EEeeeehHhHHHHHHHHcCcHHhcC
Confidence               12344 4556888888888777665

>d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: ROO-like flavoprotein TM0755, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=83.55  E-value=1.4  Score=33.22  Aligned_cols=66  Identities=12%  Similarity=0.140  Sum_probs=45.4

Q ss_pred             chhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHH
Q 020510          247 SKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAF  313 (325)
Q Consensus       247 G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l  313 (325)
                      |++-..|...++.|++.|+++.++++.....-+...+.+.+.+++.+++.--.+ .|++...+...+
T Consensus        15 GnTe~~A~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~d~iiigspt~-~~~~~~~~~~~l   80 (148)
T d1vmea1          15 GFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIFGVSTY-EAEIHPLMRFTL   80 (148)
T ss_dssp             SHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEEEECEE-TTEECHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhCCCeEEEEecccccccchhHhhhhHHHCCEeEEEeccc-CCccCchHHHHH
Confidence            444455566666777789999999999888888777666777777666554443 466655555544

>d1ozha3 c.36.1.9 (A:367-558) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Catabolic acetolactate synthase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=82.20  E-value=1.3  Score=35.35  Aligned_cols=145  Identities=19%  Similarity=0.207  Sum_probs=76.3

Q ss_pred             HHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechh--hHHHHHHHHHHHhccC-CeeEEecccccH
Q 020510           43 LNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTFNF  119 (325)
Q Consensus        43 ~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GI--aE~~~vg~A~GlA~~G-~~p~v~~~~~~f  119 (325)
                      +.+.|.+.+.  ++.++++ |.+.+. .+ . ..+...+.|.||+..+.  +=-..+++|.|++++- -++++++. .+.
T Consensus        10 v~~~L~~~l~--~d~ii~~-d~G~~~-~~-~-~~~l~~~~p~~~~~~~~~g~mG~~l~~aiGa~la~p~~~vi~i~-GDG   82 (192)
T d1ozha3          10 IVRAMQDIVN--SDVTLTV-DMGSFH-IW-I-ARYLYTFRARQVMISNGQQTMGVALPWAIGAWLVNPERKVVSVS-GDG   82 (192)
T ss_dssp             HHHHHHHHCC--TTEEEEE-CSSHHH-HH-H-HHTGGGCCCSEEECCCTTCCTTCHHHHHHHHHHHSTTSEEEEEE-EHH
T ss_pred             HHHHHHHhCC--CCcEEEE-cCcHHH-HH-H-HHhcccCCCceeecccccccccccccchhHHHhhcccccceeec-ccc
Confidence            5556666553  3444433 444211 11 1 12233344788877421  0012466777776663 45555554 432


Q ss_pred             -HHHHHHHHHHHHhhccccCCCCccCCEEEEe--CCCCCC---------C--CCCCcch-HHHHHHhcCCCcEEEeeCCH
Q 020510          120 -SMQAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAAA---------G--VGAQHSH-CYAAWYASVPGLKVLSPYSS  184 (325)
Q Consensus       120 -~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~--~~G~~~---------g--~G~tHs~-~~~a~~~~iP~~~V~~P~d~  184 (325)
                       .+.....+-. +.+        .++|++++.  .++...         .  .|..... .+.++..++ |++-+...++
T Consensus        83 ~f~~~~~el~t-~~~--------~~l~~~iiv~nN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~  152 (192)
T d1ozha3          83 GFLQSSMELET-AVR--------LKANVLHLIWVDNGYNMVAIQEEKKYQRLSGVEFGPMDFKAYAESF-GAKGFAVESA  152 (192)
T ss_dssp             HHHHHTTHHHH-HHH--------HTCCEEEEEEECSBCHHHHHHHHHHHSSCCSCBCCCCCHHHHHHTT-TSEEEECCSG
T ss_pred             cccchhhhHHH-Hhh--------hcCceeEEEEcCCCccccccccccccCccccCcCCCCCHHHHHHHh-ccccEEeCCH
Confidence             2223333433 332        356654442  222210         0  1111111 334666676 7788999999


Q ss_pred             HHHHHHHHHhHhCCCcEEEE
Q 020510          185 EDARGLLKAAIRDPDPVVFL  204 (325)
Q Consensus       185 ~e~~~~l~~a~~~~~Pv~ir  204 (325)
                      +|++.+++++++.++|++|-
T Consensus       153 ~el~~al~~a~~~~gp~lIe  172 (192)
T d1ozha3         153 EALEPTLRAAMDVDGPAVVA  172 (192)
T ss_dssp             GGHHHHHHHHHHSSSCEEEE
T ss_pred             HHHHHHHHHHHHcCCcEEEE
Confidence            99999999999999999984

>d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain
species: Desulfovibrio gigas [TaxId: 879]

Probab=80.63  E-value=2.3  Score=32.02  Aligned_cols=71  Identities=13%  Similarity=0.180  Sum_probs=45.8

Q ss_pred             CcEEEEE---echhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHH
Q 020510          239 KDVTITA---FSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAF  313 (325)
Q Consensus       239 ~dv~Iia---~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l  313 (325)
                      ++++||-   +|.+-..|...++.|+++|+++.++++...   |.+.+...+.+++.|++----+ .|++...+...+
T Consensus         3 ~Ki~IiY~S~tGnTe~~A~~Ia~~l~~~g~ev~~~~~~~~---~~~~~~~~l~~~d~vi~Gspt~-~~~~~~~~~~~l   76 (152)
T d1e5da1           3 NKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCKAC---HHSQIMSEISDAGAVIVGSPTH-NNGILPYVAGTL   76 (152)
T ss_dssp             SEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETTTS---CHHHHHHHHHTCSEEEEECCCB-TTBCCHHHHHHH
T ss_pred             CeEEEEEECCCcHHHHHHHHHHHHHhhCCCEEEEeecccC---ChhhhccchhhCCEEEEecccc-CCccCchhHHHH
Confidence            3455553   456666777777788888999999988653   4444445566777655554433 566666666555