Citrus Sinensis ID: 020512

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-----
MEAMDAPISNFTAVHAGNPESDVAEVESFTLRVDDIFQKVDKLEERVNEIEQFYLNASKKQGSNSKGSSTLKDKEKERHVPSIRKQQQEASRREKAAEKRMEELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMAKTLLAKFEEKWLQLLPKVTEEEKRREEEEAEAQLDMQLAQDAAHAKMARDTSNELYEVDVHLDELREMLVQKCRKTSTEEKRKLGAALTRLSPEDLGKALEIVAQSNTGFQATAEEVELDMDAQVLVLDQCDCH
ccccccccccccccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccEEEEEccccccHHHHHHcc
cccccccccccccHccccccccEEEEHHHHHHHHHHHHHcccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccHHHcccccHHHHccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccHcHHHHHHHHHHHcccccccccEEEEEEccccHHHHHHccc
meamdapisnftavhagnpesdvaeVESFTLRVDDIFQKVDKLEERVNEIEQFYLNAskkqgsnskgsstlkdkekerhvpsIRKQQQEASRREKAAEKRMEELIRQFGTILRNITqhkwawpfmqpvdvkglglddyyevidkpmdfsTIKKQMEAKEYKNVREICTDVRLVFKNAmkyndersdVHVMAKTLLAKFEEKWLQLLPKVTEEEKRREEEEAEAQLDMQLAQDAAHAKMARDTSNELYEVDVHLDELREMLVQKCRKTSTEEKRKLGAALTRLSPEDLGKALEIVAQSNTGFQATAEEVELDMDAQVLVLDQCDCH
meamdapisnftavhagnpesdVAEVESFTLRVDDIFQKVDKLEERVNEIEQFylnaskkqgsnskgsstlkdkekerhvpsirkqqqeasrREKAAEKRMEELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMeakeyknvreiCTDVRLVFKNAmkyndersdVHVMAKTLLAKFEEKWLQLLPKVTEEEKRREEEEAEAQLDMQLAQDAAHAKMARDTSNELYEVDVHLDELREMLVQKCRktsteekrklgaaltrlspedlGKALEIVAQSNTGFQATAEEVELDMDAQVLVLDQCDCH
MEAMDAPISNFTAVHAGNPESDVAEVESFTLRVDDIFQKVDKLEERVNEIEQFYLNAskkqgsnskgssTLKDKEKERHVPSIRKqqqeasrrekaaekrmeeLIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMAKTLLAKFEEKWLQLLPKVTeeekrreeeeaeaQLDMQLAQDAAHAKMARDTSNELYEVDVHLDELREMLVQKCRKTSTEEKRKLGAALTRLSPEDLGKALEIVAQSNTGFQATAEEVELDMDAQVLVLDQCDCH
************************EVESFTLRVDDIFQKVDKLEERVNEIEQFYL************************************************LIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMAKTLLAKFEEKWLQLLP**************************************LYEVDVHLDELREMLVQ***************************ALEIVAQSNTGFQATAEEVELDMDAQVLVLDQC***
**********************************************************************************************************QFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMAKTLLAKFEEKWLQL*******************************************************************************EDLGKALEIVAQ*N******AEEVELDMDAQVLVLDQCDCH
MEAMDAPISNFTAVHAGNPESDVAEVESFTLRVDDIFQKVDKLEERVNEIEQFYLNAS****************************************KRMEELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMAKTLLAKFEEKWLQLLPKVT******************************DTSNELYEVDVHLDELREMLVQKCRKTSTEEKRKLGAALTRLSPEDLGKALEIVAQSNTGFQATAEEVELDMDAQVLVLDQCDCH
*******************ESDVAEVESFTLRVDDIFQKVDKLEERV***************************************************KRMEELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMAKTLLAKFEEKWLQLLP*********************************************************RKTSTEEKRKLGAALTRLSPEDLGKALEIVAQSNTGFQATAEEVELDMDAQVLVLDQCDCH
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEAMDAPISNFTAVHAGNPESDVAExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQGSNSKGSSTLKDKEKERHVPSIRKQxxxxxxxxxxxxxxxxxxxxxFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMAKTLLAKFEEKWLQLLPKVTxxxxxxxxxxxxxxxxxxxxxDAAHAKMARDTSNELYEVDVHLDELREMLVQKCRKTSTEEKRKLGAALTRLSPEDLGKALEIVAQSNTGFQATAEEVELDMDAQVLVLDQCDCH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query325 2.2.26 [Sep-21-2011]
Q84XV2386 Transcription factor GTE1 yes no 0.873 0.735 0.540 6e-91
Q9FT54369 Transcription factor GTE6 no no 0.907 0.799 0.561 1e-77
Q9LNC4 766 Transcription factor GTE4 no no 0.630 0.267 0.333 2e-27
Q9LXA7 581 Transcription factor GTE2 no no 0.316 0.177 0.446 6e-24
Q9S7T1 461 Transcription factor GTE3 no no 0.338 0.238 0.436 3e-21
Q9LK27 813 Transcription factor GTE8 no no 0.596 0.238 0.316 3e-21
Q93YS6 688 Transcription factor GTE9 no no 0.52 0.245 0.337 9e-21
Q7Y214 590 Transcription factor GTE7 no no 0.353 0.194 0.408 1e-20
Q6MGA9 798 Bromodomain-containing pr yes no 0.406 0.165 0.352 2e-20
Q5TJG6 803 Bromodomain-containing pr yes no 0.406 0.164 0.352 2e-20
>sp|Q84XV2|GTE1_ARATH Transcription factor GTE1 OS=Arabidopsis thaliana GN=GTE1 PE=2 SV=1 Back     alignment and function desciption
 Score =  334 bits (856), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 175/324 (54%), Positives = 225/324 (69%), Gaps = 40/324 (12%)

Query: 13  AVHAGNPESDVAEVESFTLRVDDIFQKVDKLEERVNEIEQFY--------LNASKK---- 60
           AV  GN ES   E+E+F   VD+I  +V++LE++V E+E FY         N SK     
Sbjct: 23  AVFNGNGES---ELENFGTCVDEITDRVNQLEQKVVEVEHFYSTKDGAAQTNTSKSNSGG 79

Query: 61  ------QGSNSKGSSTLKDKEKERHVPSIRKQQQEASRREKAAEKRMEELIRQFGTILRN 114
                 Q +NSKG+S  K+K K +HV S                    +L+RQF T+ R 
Sbjct: 80  KKIAISQPNNSKGNSAGKEKSKGKHVSS-------------------PDLMRQFATMFRQ 120

Query: 115 ITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVF 174
           I QHKWAWPF++PVDVKGLGL DYY+VI+KPMD  TIKK+ME+ EY NVREI  DVRLVF
Sbjct: 121 IAQHKWAWPFLEPVDVKGLGLHDYYKVIEKPMDLGTIKKKMESSEYSNVREIYADVRLVF 180

Query: 175 KNAMKYNDERSDVHVMAKTLLAKFEEKWLQLLPKVTEEEKRREEEEAEAQLDMQLAQDAA 234
           KNAM+YN+E+ DV+VMA++LL KFEEKWL ++PK+ EEEK++ +EEAE   + QL  +AA
Sbjct: 181 KNAMRYNEEKEDVYVMAESLLEKFEEKWLLIMPKLVEEEKKQVDEEAEKHANKQLTMEAA 240

Query: 235 HAKMARDTSNELYEVDVHLDELREMLVQKCRKTSTEEKRKLGAALTRLSPEDLGKALEIV 294
            A+MARD SNELYE+D+ L++LRE +VQ+CRK ST+EK+ L AAL RLSPEDL KAL++V
Sbjct: 241 QAEMARDLSNELYEIDLQLEKLRESVVQRCRKLSTQEKKGLSAALGRLSPEDLSKALKMV 300

Query: 295 AQSNTGFQATAEEVELDMDAQVLV 318
           ++SN  F A A EVELD+D Q  V
Sbjct: 301 SESNPSFPAGAPEVELDIDVQTDV 324
Transcription activator that plays a role in the promotion of seed germination by both negatively and positively regulating the abscisic acid (ABA) and phytochrome A (phyA) transduction pathways, respectively.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9FT54|GTE6_ARATH Transcription factor GTE6 OS=Arabidopsis thaliana GN=GTE6 PE=2 SV=1 Back     alignment and function description
>sp|Q9LNC4|GTE4_ARATH Transcription factor GTE4 OS=Arabidopsis thaliana GN=GTE4 PE=2 SV=1 Back     alignment and function description
>sp|Q9LXA7|GTE2_ARATH Transcription factor GTE2 OS=Arabidopsis thaliana GN=GTE2 PE=2 SV=2 Back     alignment and function description
>sp|Q9S7T1|GTE3_ARATH Transcription factor GTE3, chloroplastic OS=Arabidopsis thaliana GN=GTE3 PE=1 SV=1 Back     alignment and function description
>sp|Q9LK27|GTE8_ARATH Transcription factor GTE8 OS=Arabidopsis thaliana GN=GTE8 PE=2 SV=2 Back     alignment and function description
>sp|Q93YS6|GTE9_ARATH Transcription factor GTE9 OS=Arabidopsis thaliana GN=GTE9 PE=1 SV=1 Back     alignment and function description
>sp|Q7Y214|GTE7_ARATH Transcription factor GTE7 OS=Arabidopsis thaliana GN=GTE7 PE=2 SV=1 Back     alignment and function description
>sp|Q6MGA9|BRD2_RAT Bromodomain-containing protein 2 OS=Rattus norvegicus GN=Brd2 PE=2 SV=1 Back     alignment and function description
>sp|Q5TJG6|BRD2_CANFA Bromodomain-containing protein 2 OS=Canis familiaris GN=BRD2 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query325
359486529 440 PREDICTED: transcription factor GTE1-lik 0.969 0.715 0.778 1e-132
255577689391 bromodomain-containing protein, putative 0.96 0.797 0.755 1e-127
147779795377 hypothetical protein VITISV_019973 [Viti 0.956 0.824 0.756 1e-124
297742702421 unnamed protein product [Vitis vinifera] 0.963 0.743 0.754 1e-124
359484096377 PREDICTED: transcription factor GTE1-lik 0.953 0.822 0.758 1e-124
224109720318 global transcription factor group [Popul 0.898 0.918 0.791 1e-122
356565711 738 PREDICTED: uncharacterized protein LOC10 0.966 0.425 0.742 1e-121
449452116378 PREDICTED: transcription factor GTE1-lik 0.898 0.772 0.8 1e-120
296086052362 unnamed protein product [Vitis vinifera] 0.892 0.801 0.733 1e-119
224098028370 global transcription factor group [Popul 0.907 0.797 0.734 1e-116
>gi|359486529|ref|XP_002276963.2| PREDICTED: transcription factor GTE1-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 249/320 (77%), Positives = 279/320 (87%), Gaps = 5/320 (1%)

Query: 1   MEAMDAPISNFTAVHAGNPESDVAEVESFTLRVDDIFQKVDKLEERVNEIEQFYLNASKK 60
           ME MDA IS+   +  G  + + A+VES   RVDDIF KVDKLE+RVNE+EQFYL ASKK
Sbjct: 52  MEPMDASISDTRNMETGKNQGNAAQVESLKSRVDDIFTKVDKLEQRVNEVEQFYLTASKK 111

Query: 61  QGSNSKGSSTLKDKEK--ERHVPSIRKQQQEASRREKAAEKRMEELIRQFGTILRNITQH 118
           Q + SKGSS +KDK+K  ERHV S++KQQQ+ASRRE AA KRM+EL+RQFGTILR ITQH
Sbjct: 112 QLNVSKGSSIVKDKDKDKERHVASVKKQQQDASRREAAAAKRMQELMRQFGTILRQITQH 171

Query: 119 KWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKE---YKNVREICTDVRLVFK 175
           KWAWPFMQPVDV+GLGL DYYEVI+KPMDFSTIK +MEAK+   YKNVREIC DVRLVFK
Sbjct: 172 KWAWPFMQPVDVEGLGLHDYYEVIEKPMDFSTIKNKMEAKDGAGYKNVREICADVRLVFK 231

Query: 176 NAMKYNDERSDVHVMAKTLLAKFEEKWLQLLPKVTEEEKRREEEEAEAQLDMQLAQDAAH 235
           NAMKYNDER DVHVMAKTLL KFEEKWLQLLPKV EE+KRREEEEAEAQLDM LAQ+AAH
Sbjct: 232 NAMKYNDERRDVHVMAKTLLGKFEEKWLQLLPKVAEEDKRREEEEAEAQLDMHLAQEAAH 291

Query: 236 AKMARDTSNELYEVDVHLDELREMLVQKCRKTSTEEKRKLGAALTRLSPEDLGKALEIVA 295
           AKMARD SNEL+E+D+HLD++RE++VQKCRKTSTEEKRKLGAAL+RLS EDL KALEIVA
Sbjct: 292 AKMARDISNELFEIDMHLDDIREIIVQKCRKTSTEEKRKLGAALSRLSAEDLSKALEIVA 351

Query: 296 QSNTGFQATAEEVELDMDAQ 315
           QSN  FQATAEEV LD+DAQ
Sbjct: 352 QSNPSFQATAEEVHLDIDAQ 371

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255577689|ref|XP_002529721.1| bromodomain-containing protein, putative [Ricinus communis] gi|223530823|gb|EEF32687.1| bromodomain-containing protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147779795|emb|CAN62295.1| hypothetical protein VITISV_019973 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297742702|emb|CBI35336.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359484096|ref|XP_003633062.1| PREDICTED: transcription factor GTE1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224109720|ref|XP_002315289.1| global transcription factor group [Populus trichocarpa] gi|222864329|gb|EEF01460.1| global transcription factor group [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356565711|ref|XP_003551081.1| PREDICTED: uncharacterized protein LOC100797746 [Glycine max] Back     alignment and taxonomy information
>gi|449452116|ref|XP_004143806.1| PREDICTED: transcription factor GTE1-like [Cucumis sativus] gi|449485919|ref|XP_004157310.1| PREDICTED: transcription factor GTE1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|296086052|emb|CBI31493.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224098028|ref|XP_002311109.1| global transcription factor group [Populus trichocarpa] gi|222850929|gb|EEE88476.1| global transcription factor group [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query325
TAIR|locus:2044722386 IMB1 "AT2G34900" [Arabidopsis 0.92 0.774 0.508 3.1e-74
TAIR|locus:2038565 766 GTE4 "AT1G06230" [Arabidopsis 0.304 0.129 0.515 1.4e-28
TAIR|locus:2155715 590 GTE7 "AT5G65630" [Arabidopsis 0.273 0.150 0.494 1.5e-25
TAIR|locus:2030958 487 AT1G17790 "AT1G17790" [Arabido 0.313 0.209 0.401 1.3e-23
UNIPROTKB|Q5TJG6 803 BRD2 "Bromodomain-containing p 0.489 0.198 0.331 2.6e-23
ZFIN|ZDB-GENE-990415-248 838 brd2a "bromodomain-containing 0.310 0.120 0.442 3e-23
UNIPROTKB|A5D9K6 803 BRD2 "Uncharacterized protein" 0.489 0.198 0.325 7e-23
UNIPROTKB|Q32S26 803 BRD2 "Bromodomain-containing p 0.489 0.198 0.325 8.9e-23
TAIR|locus:2032692 461 GTE3 "AT1G73150" [Arabidopsis 0.313 0.221 0.441 9.5e-23
UNIPROTKB|H9L2H3 859 LOC100859056 "Uncharacterized 0.264 0.100 0.465 1.2e-22
TAIR|locus:2044722 IMB1 "AT2G34900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 749 (268.7 bits), Expect = 3.1e-74, P = 3.1e-74
 Identities = 154/303 (50%), Positives = 199/303 (65%)

Query:    13 AVHAGNPESDVAEVESFTLRVDDIFQKVDKLEERVNEIEQFYLNAXXXXXXXXXXXXTLK 72
             AV  GN ES   E+E+F   VD+I  +V++LE++V E+E FY +                
Sbjct:    23 AVFNGNGES---ELENFGTCVDEITDRVNQLEQKVVEVEHFY-STKDGAAQTNTSKSNSG 78

Query:    73 DKEKERHVPSIRKXXXXXXXXXXXXXXXXXXLIRQFGTILRNITQHKWAWPFMQPVDVKG 132
              K+     P+  K                  L+RQF T+ R I QHKWAWPF++PVDVKG
Sbjct:    79 GKKIAISQPNNSKGNSAGKEKSKGKHVSSPDLMRQFATMFRQIAQHKWAWPFLEPVDVKG 138

Query:   133 LGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMAK 192
             LGL DYY+VI+KPMD  TIKK+ME+ EY NVREI  DVRLVFKNAM+YN+E+ DV+VMA+
Sbjct:   139 LGLHDYYKVIEKPMDLGTIKKKMESSEYSNVREIYADVRLVFKNAMRYNEEKEDVYVMAE 198

Query:   193 TLLAKFEEKWLQLLPKVTXXXXXXXXXXXXXQLDMQLAQDAAHAKMARDTSNELYEVDVH 252
             +LL KFEEKWL ++PK+                + QL  +AA A+MARD SNELYE+D+ 
Sbjct:   199 SLLEKFEEKWLLIMPKLVEEEKKQVDEEAEKHANKQLTMEAAQAEMARDLSNELYEIDLQ 258

Query:   253 LDELREMLVQKCRKTSTEEKRKLGAALTRLSPEDLGKALEIVAQSNTGFQATAEEVELDM 312
             L++LRE +VQ+CRK ST+EK+ L AAL RLSPEDL KAL++V++SN  F A A EVELD+
Sbjct:   259 LEKLRESVVQRCRKLSTQEKKGLSAALGRLSPEDLSKALKMVSESNPSFPAGAPEVELDI 318

Query:   313 DAQ 315
             D Q
Sbjct:   319 DVQ 321
GO:0003677 "DNA binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0010030 "positive regulation of seed germination" evidence=IMP
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP
GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA
GO:0009560 "embryo sac egg cell differentiation" evidence=RCA
TAIR|locus:2038565 GTE4 "AT1G06230" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2155715 GTE7 "AT5G65630" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2030958 AT1G17790 "AT1G17790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5TJG6 BRD2 "Bromodomain-containing protein 2" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-990415-248 brd2a "bromodomain-containing 2a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|A5D9K6 BRD2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q32S26 BRD2 "Bromodomain-containing protein 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
TAIR|locus:2032692 GTE3 "AT1G73150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|H9L2H3 LOC100859056 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q84XV2GTE1_ARATHNo assigned EC number0.54010.87380.7357yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00002627001
SubName- Full=Chromosome undetermined scaffold_133, whole genome shotgun sequence; (438 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query325
cd0550699 cd05506, Bromo_plant1, Bromodomain, uncharacterize 6e-48
cd05498102 cd05498, Bromo_Brdt_II_like, Bromodomain, Brdt_lik 2e-30
smart00297107 smart00297, BROMO, bromo domain 1e-28
cd0436999 cd04369, Bromodomain, Bromodomain 2e-27
cd05499102 cd05499, Bromo_BDF1_2_II, Bromodomain 2e-24
cd05509101 cd05509, Bromo_gcn5_like, Bromodomain; Gcn5_like s 1e-23
cd05497107 cd05497, Bromo_Brdt_I_like, Bromodomain, Brdt_like 2e-23
pfam0043984 pfam00439, Bromodomain, Bromodomain 3e-23
cd05495108 cd05495, Bromo_cbp_like, Bromodomain, cbp_like sub 8e-21
cd0550397 cd05503, Bromo_BAZ2A_B_like, Bromodomain, BAZ2A/BA 5e-20
cd05500103 cd05500, Bromo_BDF1_2_I, Bromodomain 2e-19
cd05504115 cd05504, Bromo_Acf1_like, Bromodomain; Acf1_like o 9e-18
cd05496119 cd05496, Bromo_WDR9_II, Bromodomain; WDR9 repeat I 2e-17
cd05502109 cd05502, Bromo_tif1_like, Bromodomain; tif1_like s 3e-16
COG5076371 COG5076, COG5076, Transcription factor involved in 1e-15
cd05511112 cd05511, Bromo_TFIID, Bromodomain, TFIID-like subf 5e-15
cd0550597 cd05505, Bromo_WSTF_like, Bromodomain; Williams sy 2e-12
cd05510112 cd05510, Bromo_SPT7_like, Bromodomain; SPT7_like s 2e-12
cd05507104 cd05507, Bromo_brd8_like, Bromodomain, brd8_like s 4e-12
cd05515105 cd05515, Bromo_polybromo_V, Bromodomain, polybromo 4e-11
cd0551398 cd05513, Bromo_brd7_like, Bromodomain, brd7_like s 4e-11
cd0551298 cd05512, Bromo_brd1_like, Bromodomain; brd1_like s 1e-10
cd05520103 cd05520, Bromo_polybromo_III, Bromodomain, polybro 2e-10
cd05516107 cd05516, Bromo_SNF2L2, Bromodomain, SNF2L2-like su 8e-10
cd05518103 cd05518, Bromo_polybromo_IV, Bromodomain, polybrom 1e-09
cd05519103 cd05519, Bromo_SNF2, Bromodomain, SNF2-like subfam 6e-09
cd05525106 cd05525, Bromo_ASH1, Bromodomain; ASH1_like sub-fa 6e-09
cd05529128 cd05529, Bromo_WDR9_I_like, Bromodomain; WDR9 repe 2e-08
cd05521106 cd05521, Bromo_Rsc1_2_I, Bromodomain, repeat I in 3e-08
cd05528112 cd05528, Bromo_AAA, Bromodomain; sub-family co-occ 1e-07
cd05522104 cd05522, Bromo_Rsc1_2_II, Bromodomain, repeat II i 1e-07
cd05524113 cd05524, Bromo_polybromo_I, Bromodomain, polybromo 3e-06
cd0550899 cd05508, Bromo_RACK7, Bromodomain, RACK7_like subf 4e-06
cd05501102 cd05501, Bromo_SP100C_like, Bromodomain, SP100C_li 6e-06
cd05517103 cd05517, Bromo_polybromo_II, Bromodomain, polybrom 2e-05
cd05494114 cd05494, Bromodomain_1, Bromodomain; uncharacteriz 2e-04
>gnl|CDD|99938 cd05506, Bromo_plant1, Bromodomain, uncharacterized subfamily specific to plants Back     alignment and domain information 
 Score =  155 bits (395), Expect = 6e-48
 Identities = 52/97 (53%), Positives = 66/97 (68%)

Query: 106 RQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVRE 165
           +Q GT+LR + +HKW W F  PVDV  LGL DY+++I KPMD  T+KK++E  EY +  E
Sbjct: 3   KQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEE 62

Query: 166 ICTDVRLVFKNAMKYNDERSDVHVMAKTLLAKFEEKW 202
              DVRL F NAM+YN   +DVH MAK LL  FE +W
Sbjct: 63  FAADVRLTFANAMRYNPPGNDVHTMAKELLKIFETRW 99

Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 99
>gnl|CDD|99930 cd05498, Bromo_Brdt_II_like, Bromodomain, Brdt_like subfamily, repeat II Back     alignment and domain information
>gnl|CDD|197636 smart00297, BROMO, bromo domain Back     alignment and domain information
>gnl|CDD|99922 cd04369, Bromodomain, Bromodomain Back     alignment and domain information
>gnl|CDD|99931 cd05499, Bromo_BDF1_2_II, Bromodomain Back     alignment and domain information
>gnl|CDD|99941 cd05509, Bromo_gcn5_like, Bromodomain; Gcn5_like subfamily Back     alignment and domain information
>gnl|CDD|99929 cd05497, Bromo_Brdt_I_like, Bromodomain, Brdt_like subfamily, repeat I Back     alignment and domain information
>gnl|CDD|215921 pfam00439, Bromodomain, Bromodomain Back     alignment and domain information
>gnl|CDD|99927 cd05495, Bromo_cbp_like, Bromodomain, cbp_like subfamily Back     alignment and domain information
>gnl|CDD|99935 cd05503, Bromo_BAZ2A_B_like, Bromodomain, BAZ2A/BAZ2B_like subfamily Back     alignment and domain information
>gnl|CDD|99932 cd05500, Bromo_BDF1_2_I, Bromodomain Back     alignment and domain information
>gnl|CDD|99936 cd05504, Bromo_Acf1_like, Bromodomain; Acf1_like or BAZ1A_like subfamily Back     alignment and domain information
>gnl|CDD|99928 cd05496, Bromo_WDR9_II, Bromodomain; WDR9 repeat II_like subfamily Back     alignment and domain information
>gnl|CDD|99934 cd05502, Bromo_tif1_like, Bromodomain; tif1_like subfamily Back     alignment and domain information
>gnl|CDD|227408 COG5076, COG5076, Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>gnl|CDD|99943 cd05511, Bromo_TFIID, Bromodomain, TFIID-like subfamily Back     alignment and domain information
>gnl|CDD|99937 cd05505, Bromo_WSTF_like, Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like) Back     alignment and domain information
>gnl|CDD|99942 cd05510, Bromo_SPT7_like, Bromodomain; SPT7_like subfamily Back     alignment and domain information
>gnl|CDD|99939 cd05507, Bromo_brd8_like, Bromodomain, brd8_like subgroup Back     alignment and domain information
>gnl|CDD|99946 cd05515, Bromo_polybromo_V, Bromodomain, polybromo repeat V Back     alignment and domain information
>gnl|CDD|99945 cd05513, Bromo_brd7_like, Bromodomain, brd7_like subgroup Back     alignment and domain information
>gnl|CDD|99944 cd05512, Bromo_brd1_like, Bromodomain; brd1_like subfamily Back     alignment and domain information
>gnl|CDD|99951 cd05520, Bromo_polybromo_III, Bromodomain, polybromo repeat III Back     alignment and domain information
>gnl|CDD|99947 cd05516, Bromo_SNF2L2, Bromodomain, SNF2L2-like subfamily, specific to animals Back     alignment and domain information
>gnl|CDD|99949 cd05518, Bromo_polybromo_IV, Bromodomain, polybromo repeat IV Back     alignment and domain information
>gnl|CDD|99950 cd05519, Bromo_SNF2, Bromodomain, SNF2-like subfamily, specific to fungi Back     alignment and domain information
>gnl|CDD|99955 cd05525, Bromo_ASH1, Bromodomain; ASH1_like sub-family Back     alignment and domain information
>gnl|CDD|99958 cd05529, Bromo_WDR9_I_like, Bromodomain; WDR9 repeat I_like subfamily Back     alignment and domain information
>gnl|CDD|99952 cd05521, Bromo_Rsc1_2_I, Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi Back     alignment and domain information
>gnl|CDD|99957 cd05528, Bromo_AAA, Bromodomain; sub-family co-occurring with AAA domains Back     alignment and domain information
>gnl|CDD|99953 cd05522, Bromo_Rsc1_2_II, Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi Back     alignment and domain information
>gnl|CDD|99954 cd05524, Bromo_polybromo_I, Bromodomain, polybromo repeat I Back     alignment and domain information
>gnl|CDD|99940 cd05508, Bromo_RACK7, Bromodomain, RACK7_like subfamily Back     alignment and domain information
>gnl|CDD|99933 cd05501, Bromo_SP100C_like, Bromodomain, SP100C_like subfamily Back     alignment and domain information
>gnl|CDD|99948 cd05517, Bromo_polybromo_II, Bromodomain, polybromo repeat II Back     alignment and domain information
>gnl|CDD|99926 cd05494, Bromodomain_1, Bromodomain; uncharacterized subfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 325
KOG1474 640 consensus Transcription initiation factor TFIID, s 100.0
cd05496119 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like sub 99.97
cd05495108 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cb 99.96
cd05497107 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily 99.96
cd0550597 Bromo_WSTF_like Bromodomain; Williams syndrome tra 99.96
cd0550397 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like s 99.96
cd0550699 Bromo_plant1 Bromodomain, uncharacterized subfamil 99.95
cd05507104 Bromo_brd8_like Bromodomain, brd8_like subgroup. I 99.95
cd05504115 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_li 99.95
cd05502109 Bromo_tif1_like Bromodomain; tif1_like subfamily. 99.95
cd0550899 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RAC 99.95
cd05510112 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. 99.95
cd05498102 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamil 99.95
cd05501102 Bromo_SP100C_like Bromodomain, SP100C_like subfami 99.95
cd05499102 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfam 99.95
cd05509101 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. 99.95
cd05500103 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfami 99.95
cd05528112 Bromo_AAA Bromodomain; sub-family co-occurring wit 99.94
cd05516107 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, s 99.94
cd0551398 Bromo_brd7_like Bromodomain, brd7_like subgroup. T 99.94
cd0551298 Bromo_brd1_like Bromodomain; brd1_like subfamily. 99.94
cd05511112 Bromo_TFIID Bromodomain, TFIID-like subfamily. Hum 99.93
cd05519103 Bromo_SNF2 Bromodomain, SNF2-like subfamily, speci 99.93
cd05524113 Bromo_polybromo_I Bromodomain, polybromo repeat I. 99.93
cd05515105 Bromo_polybromo_V Bromodomain, polybromo repeat V. 99.92
cd05518103 Bromo_polybromo_IV Bromodomain, polybromo repeat I 99.92
cd05525106 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 99.92
cd05520103 Bromo_polybromo_III Bromodomain, polybromo repeat 99.92
cd05529128 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like 99.92
cd05517103 Bromo_polybromo_II Bromodomain, polybromo repeat I 99.92
smart00297107 BROMO bromo domain. 99.92
cd05522104 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_l 99.9
cd05521106 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_lik 99.89
PF0043984 Bromodomain: Bromodomain; InterPro: IPR001487 Brom 99.89
cd0436999 Bromodomain Bromodomain. Bromodomains are found in 99.89
cd05492109 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family 99.88
cd05526110 Bromo_polybromo_VI Bromodomain, polybromo repeat V 99.81
KOG12451404 consensus Chromatin remodeling complex WSTF-ISWI, 99.78
COG5076371 Transcription factor involved in chromatin remodel 99.77
KOG1472720 consensus Histone acetyltransferase SAGA/ADA, cata 99.67
cd05494114 Bromodomain_1 Bromodomain; uncharacterized subfami 99.44
cd05491119 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, 99.18
KOG0955 1051 consensus PHD finger protein BR140/LIN-49 [General 99.16
KOG03861157 consensus Chromatin remodeling complex SWI/SNF, co 99.08
KOG00081563 consensus Transcription initiation factor TFIID, s 99.06
KOG1827 629 consensus Chromatin remodeling complex RSC, subuni 98.94
KOG1472 720 consensus Histone acetyltransferase SAGA/ADA, cata 98.89
KOG00081563 consensus Transcription initiation factor TFIID, s 98.89
KOG1474 640 consensus Transcription initiation factor TFIID, s 98.72
KOG1828 418 consensus IRF-2-binding protein CELTIX-1, contains 98.32
KOG1828418 consensus IRF-2-binding protein CELTIX-1, contains 98.24
COG5076371 Transcription factor involved in chromatin remodel 97.53
cd05493131 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL- 97.24
KOG06441113 consensus Uncharacterized conserved protein, conta 91.86
KOG0732 1080 consensus AAA+-type ATPase containing the bromodom 89.88
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=3.5e-34  Score=295.35  Aligned_cols=221  Identities=37%  Similarity=0.572  Sum_probs=161.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 020512           96 AAEKRMEELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFK  175 (325)
Q Consensus        96 ~~~~~~~~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~  175 (325)
                      ...+.+..++++|..||..|+.|+++|||..|||+..||+||||+||++||||+||+.||.+|.|.++.+|++||||||.
T Consensus       215 ~~~~~~~~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F~  294 (640)
T KOG1474|consen  215 PKSKLTVELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVRLTFD  294 (640)
T ss_pred             ccccccHHHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHHHHHHHHHHHHH
Confidence            35677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhcCCCCCHHHHHHHHHHHHHHHHHHhhCCCCchHHHhhhHHH----------------------HHH---H------
Q 020512          176 NAMKYNDERSDVHVMAKTLLAKFEEKWLQLLPKVTEEEKRREEEE----------------------AEA---Q------  224 (325)
Q Consensus       176 Na~~YN~~~s~v~~~A~~L~~~fe~~~~~~~~~~~~~~~~~~~ee----------------------~~~---~------  224 (325)
                      ||++||++|++||.||..|+++|+.+|..++..+...........                      ...   .      
T Consensus       295 Ncm~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (640)
T KOG1474|consen  295 NCMTYNPEGSDVYAMAKKLQEVFEERWASMPLEIEESESAVKEEAGMASSDQIPSNSVEGPRSSSFESRESASEPSSELM  374 (640)
T ss_pred             HHHhcCCCCCHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccCcccccchhcccccCcccccc
Confidence            999999999999999999999999999997655432211100000                      000   0      


Q ss_pred             -------HhHH--hhHHHHHHHhh----hcch-------hhhhhhhhhhH-----HHH----HHhhhhccCCCHHHHHHH
Q 020512          225 -------LDMQ--LAQDAAHAKMA----RDTS-------NELYEVDVHLD-----ELR----EMLVQKCRKTSTEEKRKL  275 (325)
Q Consensus       225 -------~~~~--~~~~~~~~~~~----~~~~-------~el~~~~~~l~-----~l~----~~~~~~~r~mt~eEK~~L  275 (325)
                             ....  ......+...+    ...+       .++..-...+.     ..+    .......+.||..++..|
T Consensus       375 ~~~e~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~t~~~~~~l  454 (640)
T KOG1474|consen  375 SEEERKKLLAELKLLLKDVPPQLIALLQRPVSKPPRKIEEELESDKRPLVTGKLIKEKNKKEKAANENKRDMTAPEKAKL  454 (640)
T ss_pred             cHHhhhhhHhhhhcchhhhhHHHHhhhhccccCccccccccccccccccchhhhhhhhhccccccccccccccccccccc
Confidence                   0000  00000000000    0000       00000000000     000    011224578999999999


Q ss_pred             HHHhcCC-ChHhHHHHHHHH--HhcCCCCCCCCCeEEEeCCCCC
Q 020512          276 GAALTRL-SPEDLGKALEIV--AQSNTGFQATAEEVELDMDAQV  316 (325)
Q Consensus       276 ~~~i~~L-~~e~l~~vi~II--~~~~p~~~~~~deiElDid~Ls  316 (325)
                      ...+..| ++..+..+++|+  ....+.+..+.+++++|++.+.
T Consensus       455 ~~~~~~~~~p~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vd  498 (640)
T KOG1474|consen  455 KELLQNLLPPNKLESIVEILKPEKRQLDLSQNDDEIELDLDSVD  498 (640)
T ss_pred             hhhccCCCCCccccCcccccchhhhcccccccccchhhcccccc
Confidence            9999995 999999999999  5567778789999999999998

>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily Back     alignment and domain information
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily Back     alignment and domain information
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I Back     alignment and domain information
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like) Back     alignment and domain information
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily Back     alignment and domain information
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants Back     alignment and domain information
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup Back     alignment and domain information
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily Back     alignment and domain information
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily Back     alignment and domain information
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily Back     alignment and domain information
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily Back     alignment and domain information
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II Back     alignment and domain information
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily Back     alignment and domain information
>cd05499 Bromo_BDF1_2_II Bromodomain Back     alignment and domain information
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily Back     alignment and domain information
>cd05500 Bromo_BDF1_2_I Bromodomain Back     alignment and domain information
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains Back     alignment and domain information
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals Back     alignment and domain information
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup Back     alignment and domain information
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily Back     alignment and domain information
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily Back     alignment and domain information
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi Back     alignment and domain information
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I Back     alignment and domain information
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V Back     alignment and domain information
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV Back     alignment and domain information
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family Back     alignment and domain information
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III Back     alignment and domain information
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily Back     alignment and domain information
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II Back     alignment and domain information
>smart00297 BROMO bromo domain Back     alignment and domain information
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi Back     alignment and domain information
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi Back     alignment and domain information
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins [] Back     alignment and domain information
>cd04369 Bromodomain Bromodomain Back     alignment and domain information
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family Back     alignment and domain information
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI Back     alignment and domain information
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] Back     alignment and domain information
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily Back     alignment and domain information
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi Back     alignment and domain information
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] Back     alignment and domain information
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription] Back     alignment and domain information
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription] Back     alignment and domain information
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription] Back     alignment and domain information
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription] Back     alignment and domain information
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription] Back     alignment and domain information
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins Back     alignment and domain information
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] Back     alignment and domain information
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query325
2g4a_A116 Solution Structure Of A Bromodomain From Ring3 Prot 2e-19
2dvv_A112 Crystal Structure Of The Second Bromodomain Of The 2e-19
2i8n_A114 Solution Structure Of The Second Bromodomain Of Brd 2e-19
3oni_A114 Crystal Structure Of The Second Bromodomain Of Huma 2e-19
2lsp_B128 Solution Structures Of Brd4 Second Bromodomain With 5e-19
2ouo_A130 Crystal Structure Of The Bromo Domain 2 In Human Br 5e-19
3jvl_A120 Crystal Structure Of Bromodomain 2 Of Mouse Brd4 Le 1e-18
2wp1_A126 Structure Of Brdt Bromodomain 2 Bound To An Acetyla 6e-18
2oo1_A113 Crystal Structure Of The Bromo Domain 2 Of Human Br 1e-17
2e7n_A117 Solution Structure Of The Second Bromodomain From H 1e-17
2dww_A114 Crystal Structure Of Bromodomain-Containing Protein 9e-17
3jvj_A131 Crystal Structure Of The Bromodomain 1 In Mouse Brd 6e-16
4don_A145 Brd4 Bromodomain 1 Complex With A Fragment 3,4-dihy 6e-16
2oss_A127 Crystal Structure Of The Bromo Domain 1 In Human Br 7e-16
4hbw_A127 Crystal Structure Of The First Bromodomain Of Human 7e-16
2wp2_A120 Structure Of Brdt Bromodomain Bd1 Bound To A Diacet 1e-15
2ydw_A153 Crystal Structure Of The First Bromodomain Of Human 4e-15
4a9e_A154 N-Terminal Bromodomain Of Human Brd2 With 3-Methyl- 5e-15
2rfj_A119 Crystal Structure Of The Bromo Domain 1 In Human Br 5e-15
3g0l_A117 Crystal Structure Of Human Bromodomain Adjacent To 2e-14
2e7o_A112 Solution Structure Of The Bromodomain From Human Br 2e-14
2l5e_A128 Complex Between Bd1 Of Brd3 And Gata-1 C-Tail Lengt 3e-14
2nxb_A123 Crystal Structure Of Human Bromodomain Containing P 3e-14
2yw5_A138 Solution Structure Of The Bromodomain From Human Br 3e-14
3mb3_A135 Crystal Structure Of The Second Bromodomain Of Plec 1e-13
3aqa_A128 Crystal Structure Of The Human Brd2 Bd1 Bromodomain 6e-13
1x0j_A122 Crystal Structure Analysis Of The N-Terminal Bromod 8e-13
3q2e_A123 Crystal Structure Of The Second Bromodomain Of Huma 1e-12
1e6i_A121 Bromodomain From Gcn5 Complexed With Acetylated H4 4e-12
1jsp_B121 Nmr Structure Of Cbp Bromodomain In Complex With P5 5e-12
3dwy_A119 Crystal Structure Of The Bromodomain Of Human Crebb 5e-12
3i3j_A124 Crystal Structure Of The Bromodomain Of Human Ep300 1e-11
3qzs_A115 Crystal Structure Of Bptf Bromo In Complex With His 1e-11
3uv2_A126 Crystal Structure Of The Bromodomain Of Human Nucle 2e-11
2ri7_A174 Crystal Structure Of Phd Finger-Linker-Bromodomain 2e-11
3qzv_A174 Crystal Structure Of Bptf Phd-Linker-Bromo In Compl 2e-11
3qzt_A115 Crystal Structure Of Bptf Bromo In Complex With His 2e-11
2f6j_A174 Crystal Structure Of Phd Finger-Linker-Bromodomain 3e-10
3nxb_A116 Crystal Structure Of The Bromodomain Of Human Cecr2 9e-10
3uv5_A265 Crystal Structure Of The Tandem Bromodomains Of Hum 1e-09
1eqf_A280 Crystal Structure Of The Double Bromodomain Module 1e-09
3aad_A292 Structure Of The Histone Chaperone Cia/asf1-double 1e-09
3gg3_A119 Crystal Structure Of The Bromodomain Of Human Pcaf 2e-09
1n72_A118 Structure And Ligand Of A Histone Acetyltransferase 2e-09
3uv4_A158 Crystal Structure Of The Second Bromodomain Of Huma 3e-09
3rcw_A135 Crystal Structure Of The Bromodomain Of Human Brd1 2e-08
3hmh_A155 Crystal Structure Of The Second Bromodomain Of Huma 3e-08
3u5m_A207 Crystal Structure Of Trim33 Phd-Bromo In The Free S 1e-07
2yyn_A135 Crystal Sturcture Of Human Bromodomain Protein Leng 1e-07
3d7c_A112 Crystal Structure Of The Bromodomain Of Human Gcn5, 2e-07
1f68_A103 Nmr Solution Structure Of The Bromodomain From Huma 2e-07
3o33_A184 Crystal Structure Of Trim24 Phd-Bromo In The Free S 2e-07
2r0v_A346 Structure Of The Rsc4 Tandem Bromodomain Acetylated 3e-07
2r10_A361 Structure Of An Acetylated Rsc4 Tandem Bromodomain 3e-07
3fkm_X166 Plasmodium Falciparum Bromodomain-Containing Protei 4e-07
3lxj_A136 Crystal Structure Of The Bromodomain Of Human Aaa D 1e-06
3dai_A130 Crystal Structure Of The Bromodomain Of The Human A 3e-06
3hme_A123 Crystal Structure Of Human Bromodomain Containing 9 6e-06
3tlp_A150 Crystal Structure Of The Fourth Bromodomain Of Huma 1e-05
2r0s_A285 Crystal Structure Of The Rsc4 Tandem Bromodomain Le 2e-05
2r0y_A311 Structure Of The Rsc4 Tandem Bromodomain In Complex 2e-05
2ktb_B121 Solution Structure Of The Second Bromodomain Of Hum 2e-05
3ljw_A120 Crystal Structure Of The Second Bromodomain Of Huma 3e-05
3hmf_A116 Crystal Structure Of The Second Bromodomain Of Huma 3e-05
3g0j_A124 Crystal Structure Of The Fifth Bromodomain Of Human 3e-05
2yqd_A120 Solution Structure Of The Fifth Bromodomain From Mo 4e-05
2dkw_A131 Solution Structure Of The Bromodomain Of Human Prot 6e-05
2d9e_A121 Solution Structure Of The Bromodomain Of Peregrin L 7e-05
2i7k_A117 Solution Structure Of The Bromodomain Of Human Brd7 9e-05
2dat_A123 Solution Structure Of The Bromodomain Of Human SwiS 1e-04
3mqm_A126 Crystal Structure Of The Bromodomain Of Human Ash1l 1e-04
2grc_A129 1.5 A Structure Of Bromodomain From Human Brg1 Prot 2e-04
3uvd_A124 Crystal Structure Of The Bromodomain Of Human Trans 2e-04
2h60_A128 Solution Structure Of Human Brg1 Bromodomain Length 2e-04
3iu5_A116 Crystal Structure Of The First Bromodomain Of Human 6e-04
>pdb|2G4A|A Chain A, Solution Structure Of A Bromodomain From Ring3 Protein Length = 116 Back     alignment and structure 
Iteration: 1

 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 65/104 (62%), Gaps = 3/104 (2%)
Query: 105 IRQFGTILRNITQHK---WAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYK 161
           ++    IL+ +   K   +AWPF +PVD   LGL DY+++I  PMD ST+K++ME ++Y+
Sbjct: 3   LKHCNVILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYR 62
Query: 162 NVREICTDVRLVFKNAMKYNDERSDVHVMAKTLLAKFEEKWLQL 205
           + +E   DVRL+F N  KYN    DV  MA+ L   FE ++ ++
Sbjct: 63  DAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRYAKM 106
>pdb|2DVV|A Chain A, Crystal Structure Of The Second Bromodomain Of The Human Brd2 Protein Length = 112 Back     alignment and structure
>pdb|2I8N|A Chain A, Solution Structure Of The Second Bromodomain Of Brd4 Length = 114 Back     alignment and structure
>pdb|3ONI|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd2 In Complex With The Inhibitor Jq1 Length = 114 Back     alignment and structure
>pdb|2LSP|B Chain B, Solution Structures Of Brd4 Second Bromodomain With Nf-Kb-K310ac Peptide Length = 128 Back     alignment and structure
>pdb|2OUO|A Chain A, Crystal Structure Of The Bromo Domain 2 In Human Bromodomain Containing Protein 4 (Brd4) Length = 130 Back     alignment and structure
>pdb|3JVL|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4 Length = 120 Back     alignment and structure
>pdb|2WP1|A Chain A, Structure Of Brdt Bromodomain 2 Bound To An Acetylated Histone H3 Peptide Length = 126 Back     alignment and structure
>pdb|2OO1|A Chain A, Crystal Structure Of The Bromo Domain 2 Of Human Bromodomain Containing Protein 3 (Brd3) Length = 113 Back     alignment and structure
>pdb|2E7N|A Chain A, Solution Structure Of The Second Bromodomain From Human Bromodomain-Containing Protein 3 Length = 117 Back     alignment and structure
>pdb|2DWW|A Chain A, Crystal Structure Of Bromodomain-Containing Protein 4 Length = 114 Back     alignment and structure
>pdb|3JVJ|A Chain A, Crystal Structure Of The Bromodomain 1 In Mouse Brd4 Length = 131 Back     alignment and structure
>pdb|4DON|A Chain A, Brd4 Bromodomain 1 Complex With A Fragment 3,4-dihydro-3-methyl-2(1h)- Quinazolinon Length = 145 Back     alignment and structure
>pdb|2OSS|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human Bromodomain Containing Protein 4 (Brd4) Length = 127 Back     alignment and structure
>pdb|4HBW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In Complex With A Quinazoline Ligand Length = 127 Back     alignment and structure
>pdb|2WP2|A Chain A, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated Histone H4 Peptide. Length = 120 Back     alignment and structure
>pdb|2YDW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2 With The Inhibitor Gw841819x Length = 153 Back     alignment and structure
>pdb|4A9E|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One Length = 154 Back     alignment and structure
>pdb|2RFJ|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human Bromodomain Containing Protein, Testis Specific (Brdt) Length = 119 Back     alignment and structure
>pdb|3G0L|A Chain A, Crystal Structure Of Human Bromodomain Adjacent To Zinc Finger Domain 2b (Baz2b) Length = 117 Back     alignment and structure
>pdb|2E7O|A Chain A, Solution Structure Of The Bromodomain From Human Bromodomain Adjacent To Zinc Finger Domain 2b Length = 112 Back     alignment and structure
>pdb|2L5E|A Chain A, Complex Between Bd1 Of Brd3 And Gata-1 C-Tail Length = 128 Back     alignment and structure
>pdb|2NXB|A Chain A, Crystal Structure Of Human Bromodomain Containing Protein 3 (Brd3) Length = 123 Back     alignment and structure
>pdb|2YW5|A Chain A, Solution Structure Of The Bromodomain From Human Bromodomain Containing Protein 3 Length = 138 Back     alignment and structure
>pdb|3MB3|A Chain A, Crystal Structure Of The Second Bromodomain Of Pleckstrin Homology Domain Interacting Protein (Phip) Length = 135 Back     alignment and structure
>pdb|3AQA|A Chain A, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In Complex With A Brd2-Interactive Compound, Bic1 Length = 128 Back     alignment and structure
>pdb|1X0J|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain Of Human Brd2 Length = 122 Back     alignment and structure
>pdb|3Q2E|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Bromodomain And Wd Repeat-Containing Protein 1 Isoform A (Wdr9) Length = 123 Back     alignment and structure
>pdb|1E6I|A Chain A, Bromodomain From Gcn5 Complexed With Acetylated H4 Peptide Length = 121 Back     alignment and structure
>pdb|1JSP|B Chain B, Nmr Structure Of Cbp Bromodomain In Complex With P53 Peptide Length = 121 Back     alignment and structure
>pdb|3DWY|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp Length = 119 Back     alignment and structure
>pdb|3I3J|A Chain A, Crystal Structure Of The Bromodomain Of Human Ep300 Length = 124 Back     alignment and structure
>pdb|3QZS|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone H4k16ac - Form I Length = 115 Back     alignment and structure
>pdb|3UV2|A Chain A, Crystal Structure Of The Bromodomain Of Human Nucleosome-Remodeling Factor Subunit Bptf Length = 126 Back     alignment and structure
>pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e Mutant From Human Bptf In The H3(1-9)k4me2 Bound State Length = 174 Back     alignment and structure
>pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With Histone H4k12ac Peptide Length = 174 Back     alignment and structure
>pdb|3QZT|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone H4k16ac - Form Ii Length = 115 Back     alignment and structure
>pdb|2F6J|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State Length = 174 Back     alignment and structure
>pdb|3NXB|A Chain A, Crystal Structure Of The Bromodomain Of Human Cecr2 Length = 116 Back     alignment and structure
>pdb|3UV5|A Chain A, Crystal Structure Of The Tandem Bromodomains Of Human Transcription Initiation Factor Tfiid Subunit 1 (Taf1) Length = 265 Back     alignment and structure
>pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodomain Module From Human Tafii250 Length = 280 Back     alignment and structure
>pdb|3AAD|A Chain A, Structure Of The Histone Chaperone Cia/asf1-double Bromodomain Complex Linking Histone Modifications And Site-specific Histone Eviction Length = 292 Back     alignment and structure
>pdb|3GG3|A Chain A, Crystal Structure Of The Bromodomain Of Human Pcaf Length = 119 Back     alignment and structure
>pdb|1N72|A Chain A, Structure And Ligand Of A Histone Acetyltransferase Bromodomain Length = 118 Back     alignment and structure
>pdb|3UV4|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Transcription Initiation Factor Tfiid Subunit 1 (Taf1) Length = 158 Back     alignment and structure
>pdb|3RCW|A Chain A, Crystal Structure Of The Bromodomain Of Human Brd1 Length = 135 Back     alignment and structure
>pdb|3HMH|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Tbp-Associated Factor Rna Polymerase 1-Like (Taf1l) Length = 155 Back     alignment and structure
>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State Length = 207 Back     alignment and structure
>pdb|2YYN|A Chain A, Crystal Sturcture Of Human Bromodomain Protein Length = 135 Back     alignment and structure
>pdb|3D7C|A Chain A, Crystal Structure Of The Bromodomain Of Human Gcn5, The General Control Of Amino-Acid Synthesis Protein 5-Like 2 Length = 112 Back     alignment and structure
>pdb|1F68|A Chain A, Nmr Solution Structure Of The Bromodomain From Human Gcn5 Length = 103 Back     alignment and structure
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State Length = 184 Back     alignment and structure
>pdb|2R0V|A Chain A, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25 Length = 346 Back     alignment and structure
>pdb|2R10|A Chain A, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone Chimera Length = 361 Back     alignment and structure
>pdb|3FKM|X Chain X, Plasmodium Falciparum Bromodomain-Containing Protein Pf10_0328 Length = 166 Back     alignment and structure
>pdb|3LXJ|A Chain A, Crystal Structure Of The Bromodomain Of Human Aaa Domain Containing 2b (Atad2b) Length = 136 Back     alignment and structure
>pdb|3DAI|A Chain A, Crystal Structure Of The Bromodomain Of The Human Atad2 Length = 130 Back     alignment and structure
>pdb|3HME|A Chain A, Crystal Structure Of Human Bromodomain Containing 9 Isoform 1 (Brd9) Length = 123 Back     alignment and structure
>pdb|3TLP|A Chain A, Crystal Structure Of The Fourth Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 150 Back     alignment and structure
>pdb|2R0S|A Chain A, Crystal Structure Of The Rsc4 Tandem Bromodomain Length = 285 Back     alignment and structure
>pdb|2R0Y|A Chain A, Structure Of The Rsc4 Tandem Bromodomain In Complex With An Acetylated H3 Peptide Length = 311 Back     alignment and structure
>pdb|2KTB|B Chain B, Solution Structure Of The Second Bromodomain Of Human Polybr Complex With An Acetylated Peptide From Histone 3 Length = 121 Back     alignment and structure
>pdb|3LJW|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Polybromo Length = 120 Back     alignment and structure
>pdb|3HMF|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 116 Back     alignment and structure
>pdb|3G0J|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 124 Back     alignment and structure
>pdb|2YQD|A Chain A, Solution Structure Of The Fifth Bromodomain From Mouse Polybromo-1 Length = 120 Back     alignment and structure
>pdb|2DKW|A Chain A, Solution Structure Of The Bromodomain Of Human Protein Kiaa1240 Length = 131 Back     alignment and structure
>pdb|2D9E|A Chain A, Solution Structure Of The Bromodomain Of Peregrin Length = 121 Back     alignment and structure
>pdb|2I7K|A Chain A, Solution Structure Of The Bromodomain Of Human Brd7 Protein Length = 117 Back     alignment and structure
>pdb|2DAT|A Chain A, Solution Structure Of The Bromodomain Of Human SwiSNF Related Matrix Associated Actin Dependent Regulator Of Cromatin Subfamily A Member 2 Length = 123 Back     alignment and structure
>pdb|3MQM|A Chain A, Crystal Structure Of The Bromodomain Of Human Ash1l Length = 126 Back     alignment and structure
>pdb|2GRC|A Chain A, 1.5 A Structure Of Bromodomain From Human Brg1 Protein, A Central Atpase Of SwiSNF REMODELING COMPLEX Length = 129 Back     alignment and structure
>pdb|3UVD|A Chain A, Crystal Structure Of The Bromodomain Of Human Transcription Activator Brg1 (Smarca4) In Complex With N-Methyl-2-Pyrrolidone Length = 124 Back     alignment and structure
>pdb|2H60|A Chain A, Solution Structure Of Human Brg1 Bromodomain Length = 128 Back     alignment and structure
>pdb|3IU5|A Chain A, Crystal Structure Of The First Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 116 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query325
2ouo_A130 HUNK1 protein, bromodomain-containing protein 4; B 99.97
3d7c_A112 General control of amino acid synthesis protein 5; 99.96
3g0l_A117 Hwalp4, bromodomain adjacent to zinc finger domain 99.96
2oss_A127 HUNK1 protein, bromodomain-containing protein 4; B 99.96
3nxb_A116 CAT eye syndrome critical region protein 2; struct 99.96
2i7k_A117 Bromodomain-containing protein 7; helix, LEFT-hand 99.96
3jvl_A120 Bromodomain-containing protein 4; alpha helical, N 99.96
3q2e_A123 Bromodomain and WD repeat-containing protein 1; st 99.96
1e6i_A121 Transcriptional activator GCN5; gene regulation, b 99.96
3mb3_A135 PH-interacting protein; PHIP, pleckstrin homology 99.96
2dat_A123 Possible global transcription activator SNF2L2; br 99.96
3p1f_A119 CREB-binding protein; structural genomics consorti 99.96
2yyn_A135 Transcription intermediary factor 1-alpha; bromo d 99.96
4alg_A154 Bromodomain-containing protein 2; signaling protei 99.96
2d9e_A121 Peregrin; four-helix bundle, transcription activat 99.96
3fkm_X166 Signaling protein; bromodomain, malaria, structura 99.96
2grc_A129 Probable global transcription activator SNF2L4; br 99.95
3mb4_A124 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 99.95
3mqm_A126 Probable histone-lysine N-methyltransferase ASH1L; 99.95
3rcw_A135 Bromodomain-containing protein 1; transcription, s 99.95
3hme_A123 Bromodomain-containing protein 9; BRD9, bromodomai 99.95
3k2j_A130 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 99.95
3iu5_A116 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 99.95
3ljw_A120 Protein polybromo-1; alpha helix, alternative spli 99.95
3tlp_A150 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 99.94
3uv4_A158 Second bromodomain of human transcription initiat 99.94
2ri7_A174 Nucleosome-remodeling factor subunit BPTF; zinc fi 99.94
3dai_A130 ATPase family AAA domain-containing protein 2; anc 99.94
3o36_A184 Transcription intermediary factor 1-alpha; TRIM24, 99.94
3uv5_A265 Transcription initiation factor TFIID subunit 1; t 99.92
3u5n_A207 E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b 99.92
2dkw_A131 Hypothetical protein KIAA1240; bromodomain-like, f 99.92
2ro1_A189 Transcription intermediary factor 1-beta; KAP, TIF 99.92
3uv5_A265 Transcription initiation factor TFIID subunit 1; t 99.91
3aad_A292 Transcription initiation factor TFIID subunit 1; p 99.91
3aad_A292 Transcription initiation factor TFIID subunit 1; p 99.89
2r0y_A311 Chromatin structure-remodeling complex protein RSC 99.89
2r10_A361 Chromatin structure-remodeling complex protein RSC 99.88
2r10_A361 Chromatin structure-remodeling complex protein RSC 99.84
2r0y_A311 Chromatin structure-remodeling complex protein RSC 99.83
3iu6_A147 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 99.8
3lqh_A183 Histone-lysine N-methyltransferase MLL; PHD finger 99.66
2jns_A90 Bromodomain-containing protein 4; ET-domain, struc 99.46
2lm0_A125 AF4/FMR2 family member 1/protein AF-9 chimera; int 93.23
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A* Back     alignment and structure
Probab=99.97  E-value=1.7e-30  Score=216.74  Aligned_cols=110  Identities=41%  Similarity=0.759  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCC---CCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 020512           98 EKRMEELIRQFGTILRNITQHKW---AWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVF  174 (325)
Q Consensus        98 ~~~~~~l~~~~~~il~~l~~~~~---s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif  174 (325)
                      .+++.+.++.|..||..|+.++.   +|+|..||++..+++||||++|++||||+||++||++|.|.++.+|.+||+|||
T Consensus        17 ~~~~~~~l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~   96 (130)
T 2ouo_A           17 SSKVSEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMF   96 (130)
T ss_dssp             --CHHHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            34556778899999999998874   899999999987789999999999999999999999999999999999999999


Q ss_pred             HchhhcCCCCCHHHHHHHHHHHHHHHHHHhhCC
Q 020512          175 KNAMKYNDERSDVHVMAKTLLAKFEEKWLQLLP  207 (325)
Q Consensus       175 ~Na~~YN~~~s~v~~~A~~L~~~fe~~~~~~~~  207 (325)
                      .||++||+++|.||.+|..|++.|+++|.+++.
T Consensus        97 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~lp~  129 (130)
T 2ouo_A           97 SNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPD  129 (130)
T ss_dssp             HHHHHHSCTTSHHHHHHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHCCC
Confidence            999999999999999999999999999998753
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A Back     alignment and structure
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A Back     alignment and structure
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ... Back     alignment and structure
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0 Back     alignment and structure
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens} Back     alignment and structure
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A* Back     alignment and structure
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens} Back     alignment and structure
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1 Back     alignment and structure
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens} Back     alignment and structure
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A Back     alignment and structure
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens} Back     alignment and structure
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A Back     alignment and structure
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7} Back     alignment and structure
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A Back     alignment and structure
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A Back     alignment and structure
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens} Back     alignment and structure
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens} Back     alignment and structure
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens} Back     alignment and structure
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens} Back     alignment and structure
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens} Back     alignment and structure
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A Back     alignment and structure
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens} Back     alignment and structure
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Back     alignment and structure
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A Back     alignment and structure
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Back     alignment and structure
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A Back     alignment and structure
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Back     alignment and structure
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Back     alignment and structure
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A Back     alignment and structure
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} Back     alignment and structure
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} Back     alignment and structure
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A Back     alignment and structure
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* Back     alignment and structure
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* Back     alignment and structure
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A Back     alignment and structure
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens} Back     alignment and structure
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Back     alignment and structure
>2jns_A Bromodomain-containing protein 4; ET-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>2lm0_A AF4/FMR2 family member 1/protein AF-9 chimera; intrinsically disordered, nuclear protein; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 325
d1eqfa1139 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain 1e-32
d3dwya1114 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP { 2e-27
d1e6ia_111 a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces c 1e-26
d1wuma1118 a.29.2.1 (A:715-832) P300/CAF histone acetyltransf 9e-25
d3d7ca1102 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [T 1e-24
d1eqfa2128 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain 2e-24
>d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Length = 139 Back     information, alignment and structure

class: All alpha proteins
fold: Bromodomain-like
superfamily: Bromodomain
family: Bromodomain
domain: TAFII250 double bromodomain module
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (290), Expect = 1e-32
 Identities = 30/136 (22%), Positives = 65/136 (47%), Gaps = 5/136 (3%)

Query: 79  HVPSIRKQQQEASRREKAAEKRMEELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDY 138
           H   + +  +   RR       +  ++    +I+ ++      +PF  PV+ K +   DY
Sbjct: 5   HCDYLNRPHKSIHRRRTDPMVTLSSILE---SIINDMRDLPNTYPFHTPVNAKVVK--DY 59

Query: 139 YEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMAKTLLAKF 198
           Y++I +PMD  T+++ +  + Y +  E    + L+ KN+  YN  +  +  +++++L   
Sbjct: 60  YKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLC 119

Query: 199 EEKWLQLLPKVTEEEK 214
           +EK  +   K+   EK
Sbjct: 120 DEKLKEKEDKLARLEK 135
>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]} Length = 114 Back     information, alignment and structure
>d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 111 Back     information, alignment and structure
>d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure
>d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure
>d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Length = 128 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query325
d3d7ca1102 GCN5 {Human (Homo sapiens) [TaxId: 9606]} 99.96
d1e6ia_111 GCN5 {Baker's yeast (Saccharomyces cerevisiae) [Ta 99.96
d3dwya1114 CREB-binding protein, CBP {Human (Homo sapiens) [T 99.95
d1eqfa1139 TAFII250 double bromodomain module {Human (Homo sa 99.95
d1wuma1118 P300/CAF histone acetyltransferase bromodomain {Hu 99.95
d1eqfa2128 TAFII250 double bromodomain module {Human (Homo sa 99.94
>d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Bromodomain-like
superfamily: Bromodomain
family: Bromodomain
domain: GCN5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.8e-30  Score=202.59  Aligned_cols=100  Identities=31%  Similarity=0.511  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcCC
Q 020512          103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYND  182 (325)
Q Consensus       103 ~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~  182 (325)
                      +|...|..||..|.+|+.++||..||++..  +||||++|++||||+||++||++|.|.|+.+|.+||+|||.||+.||+
T Consensus         2 ~L~~~l~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~   79 (102)
T d3d7ca1           2 QLYTTLKNLLAQIKSHPSAWPFMEPVKKSE--APDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNP   79 (102)
T ss_dssp             HHHHHHHHHHHHHHHSGGGGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHhCCCCCccCCCCChhh--CcCHHHHcCCccCHHHHHHHhccCccCCHHHHHHHHHHHHHHHHHHCC
Confidence            578899999999999999999999999887  999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHh
Q 020512          183 ERSDVHVMAKTLLAKFEEKWLQ  204 (325)
Q Consensus       183 ~~s~v~~~A~~L~~~fe~~~~~  204 (325)
                      ++|.+|.+|..|++.|+++|++
T Consensus        80 ~~s~~~~~A~~l~~~f~~~~ke  101 (102)
T d3d7ca1          80 PDSEYCRCASALEKFFYFKLKE  101 (102)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999998864
>d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure