Citrus Sinensis ID: 020526

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-----
Protein Sequence
MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTVDPVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGDELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF
Secondary Structure (PSIPRED)
ccEEEEEcccccEEEccccccccccEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccEEEEEccccccHHHHHHHHHHHHccccccEEEEEccccccccccccccccEEEcccccEEEEcccccccccccEEEEEcccHHHHHHHHccccEEEEEcccccEEEEcccEEEEccccccccccccccccHHHHHHHHHHHccHHHHHHHHHcEEEcccccccccHHHHHHHHHHHcccccccEEEccccccccccccEEEEEccEEcccccccccccccHHHHcccccccEEcccc
Secondary Structure Prediction (SSPRO)
ccEEEEEcccccEEccccccccccccEcccEcccccccccEEEcHHHHHccccEEEccccEEccHHHHHHHHHHHHHHHcccccccHccEEEEEcccccHHHHHHHHHHHHHcccccEEEEEEHHHHHHHHcccccEEEEEEccccEEEEEEEccccccHHEEEEcHHHHHHHHHHccccccEEEEcccccEEEEccHHHHcHHHHccHHHHccccccHHHHHHHHHHHcccccHHHHHcccEEEcHHHccccHHHHHHHHHHcccccEEEEEEcccccccccccccHHHHHHHHHHHcHHHHHccEEHHHHHHHcHHHHHHHcc
Coil and Loop (DISEMBL)
MEAAVVDAGSKllkagpaipdqapsmvipsqmkrvledgsssvdnstlvedvtvdpvvrgFIRDWDAMEDLLHHVLYaglgweegnegqilftdplcspkAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRisgctvdighgkidiaPVIEGAVQHIASRRFEVGDELAYEKTQKSceieqhtlpdgqvirigkerytvgealfqpsilgleaHGIVEQLVHTISTVSSENHRQLLENTvlcggttsmtgfEDRFQKEAglcssairptlvkppeympenltLYSAWIGGAILAKvvfpqnqhitkadydesgpsvvhrkcf
Flexible Loop (DISEMBL)
MEAAVVDAGskllkagpaipdqapsmVIPSQMKRVLEDgsssvdnstlvedvtvdpVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGDELAYEKTQksceieqhtlpdgqvirIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHItkadydesgpsvvhrkcf
Low Complexity Region (SEG)
MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTVDPVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGDELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF
Disordered region (IsUnstruct)
************************************************VEDVTVDPVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGDELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHIT*****************
Disordered Region (DISOPRED)
MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTVDPVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGDELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF
Disordered Region (DISEMBL)
********GSKLLKAGPAIPDQAPSMVIPSQMKRV*********NSTLVEDVTVDPVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGDELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADY*************
Disordered Region (DISPRO)
MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTVDPVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGDELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTVDPVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGDELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	325	2.2.26 [Sep-21-2011]
Q8L4Y5	363	Actin-related protein 7 O	yes	no	0.996	0.892	0.766	1e-164
A3ANB5	360	Actin-related protein 7 O	yes	no	0.990	0.894	0.661	1e-134
A2XMK6	360	Actin-related protein 7 O	N/A	no	0.990	0.894	0.661	1e-134
P84336	375	Actin, cytoplasmic 1 OS=C	N/A	no	0.969	0.84	0.379	5e-53
P53689	375	Actin OS=Phaffia rhodozym	N/A	no	0.969	0.84	0.376	8e-53
P48465	375	Actin OS=Cryptococcus neo	N/A	no	0.969	0.84	0.371	1e-52
Q9Y707	375	Actin-2 OS=Suillus bovinu	N/A	no	0.969	0.84	0.368	2e-52
Q25010	376	Actin, cytoplasmic A3a OS	N/A	no	0.969	0.837	0.379	2e-52
Q2U7A3	375	Actin OS=Aspergillus oryz	no	no	0.969	0.84	0.368	2e-52
Q9Y702	375	Actin-1 OS=Schizophyllum	N/A	no	0.969	0.84	0.368	2e-52

>sp|Q8L4Y5|ARP7_ARATH Actin-related protein 7 OS=Arabidopsis thaliana GN=ARP7 PE=1 SV=1

 Score =  577 bits (1487), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 279/364 (76%), Positives = 307/364 (84%), Gaps = 40/364 (10%)

Query: 1   MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDN-STLVEDVTVDPVVR 59
           MEA VVDAGSK LKAG AIPDQ+P+M+IPSQMKR+++DGSSS DN +T+ EDVT+DP+ R
Sbjct: 1   MEALVVDAGSKFLKAGAAIPDQSPAMIIPSQMKRMVDDGSSSADNPTTVFEDVTLDPIER 60

Query: 60  GFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGF 119
           G IRDWDAMEDLL +V+Y GLGWEEGNEG ILFTDPLC+PKA+REQLVQLMFETFN+SGF
Sbjct: 61  GLIRDWDAMEDLLRYVVYTGLGWEEGNEGNILFTDPLCTPKAIREQLVQLMFETFNVSGF 120

Query: 120 YSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVG----------- 168
           Y+SEQAVLSLYAVGRISGCTVDIGHGKIDIAPV+EGAVQHIAS+RFE+G           
Sbjct: 121 YASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVLEGAVQHIASKRFELGGTELTKLFAQE 180

Query: 169 ---------------------------DELAYEKTQKSCEIEQHTLPDGQVIRIGKERYT 201
                                      DE+AY+KTQ +CEIEQHTLPDGQVI IG+ERY+
Sbjct: 181 LGKTNPSMNLSMSDVEKLKEQYANCAEDEIAYKKTQ-NCEIEQHTLPDGQVISIGRERYS 239

Query: 202 VGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKE 261
           VGEALFQPSILGLE HGIVEQLV  ISTVSSENHRQLLENTVLCGGTTSMTGFE RFQKE
Sbjct: 240 VGEALFQPSILGLEEHGIVEQLVRIISTVSSENHRQLLENTVLCGGTTSMTGFESRFQKE 299

Query: 262 AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVH 321
           A LCSSAIRPTLVKPPEYMPENL +YSAW+GGAILAKVVFPQNQH+TKADYDE+GPSVVH
Sbjct: 300 ANLCSSAIRPTLVKPPEYMPENLGMYSAWVGGAILAKVVFPQNQHVTKADYDETGPSVVH 359

Query: 322 RKCF 325
           RKCF
Sbjct: 360 RKCF 363

Essential protein required during embryogenesis and all plant development stages, probably through a chromatin-mediated regulation of gene expression.
Arabidopsis thaliana (taxid: 3702)

>sp|A3ANB5|ARP7_ORYSJ Actin-related protein 7 OS=Oryza sativa subsp. japonica GN=ARP7 PE=2 SV=2

 Score =  477 bits (1227), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 240/363 (66%), Positives = 279/363 (76%), Gaps = 41/363 (11%)

Query: 1   MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTVDPVVRG 60
           MEA VVDAGSKLLKAG A+PDQ+PS+V+PS+MK  +EDG    D + + E V    VVRG
Sbjct: 1   MEAVVVDAGSKLLKAGIALPDQSPSLVMPSKMKLEVEDGQMG-DGAVVEEVVQP--VVRG 57

Query: 61  FIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFY 120
           F++DWDAMEDLL++VLY+ +GWE G+EGQILFT+PL +PKA+REQL QLMFE FN+SGFY
Sbjct: 58  FVKDWDAMEDLLNYVLYSNIGWEIGDEGQILFTEPLFTPKALREQLAQLMFEKFNVSGFY 117

Query: 121 SSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVG------------ 168
            SEQAVLSLYAVGRISGCTVDIGHGKIDIAPV EGAVQHIAS+RF++G            
Sbjct: 118 DSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVCEGAVQHIASKRFDIGGTDLTNLFAEEL 177

Query: 169 --------------------------DELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTV 202
                                     D++A+E    SC  E+HTLPDGQVI I KERY V
Sbjct: 178 KKSNSSVNIDISDVERLKEQYACCAEDQMAFEAIGSSCRPERHTLPDGQVITIEKERYIV 237

Query: 203 GEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA 262
           GEALFQP ILGLE +GIV QLV ++S V+ E HRQLLENT+LCGGT SMTGFEDRFQ+EA
Sbjct: 238 GEALFQPHILGLEDYGIVHQLVTSVSNVTPEYHRQLLENTMLCGGTASMTGFEDRFQREA 297

Query: 263 GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHR 322
            L +SAI P+LVKPPEYMPENL  YSAW+GGAILAKVVFPQNQH+TK DYDE+GPS+VH+
Sbjct: 298 NLSASAICPSLVKPPEYMPENLARYSAWLGGAILAKVVFPQNQHVTKGDYDETGPSIVHK 357

Query: 323 KCF 325
           KCF
Sbjct: 358 KCF 360

Essential protein required during embryogenesis and all plant development stages, probably through a chromatin-mediated regulation of gene expression.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2XMK6|ARP7_ORYSI Actin-related protein 7 OS=Oryza sativa subsp. indica GN=ARP7 PE=2 SV=2

 Score =  477 bits (1227), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 240/363 (66%), Positives = 279/363 (76%), Gaps = 41/363 (11%)

Query: 1   MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTVDPVVRG 60
           MEA VVDAGSKLLKAG A+PDQ+PS+V+PS+MK  +EDG    D + + E V    VVRG
Sbjct: 1   MEAVVVDAGSKLLKAGIALPDQSPSLVMPSKMKLEVEDGQMG-DGAVVEEVVQP--VVRG 57

Query: 61  FIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFY 120
           F++DWDAMEDLL++VLY+ +GWE G+EGQILFT+PL +PKA+REQL QLMFE FN+SGFY
Sbjct: 58  FVKDWDAMEDLLNYVLYSNIGWEIGDEGQILFTEPLFTPKALREQLAQLMFEKFNVSGFY 117

Query: 121 SSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVG------------ 168
            SEQAVLSLYAVGRISGCTVDIGHGKIDIAPV EGAVQHIAS+RF++G            
Sbjct: 118 DSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVCEGAVQHIASKRFDIGGTDLTNLFAEEL 177

Query: 169 --------------------------DELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTV 202
                                     D++A+E    SC  E+HTLPDGQVI I KERY V
Sbjct: 178 KKSNSSVNIDISDVERLKEQYACCAEDQMAFEAIGSSCRPERHTLPDGQVITIEKERYIV 237

Query: 203 GEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA 262
           GEALFQP ILGLE +GIV QLV ++S V+ E HRQLLENT+LCGGT SMTGFEDRFQ+EA
Sbjct: 238 GEALFQPHILGLEDYGIVHQLVTSVSNVTPEYHRQLLENTMLCGGTASMTGFEDRFQREA 297

Query: 263 GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHR 322
            L +SAI P+LVKPPEYMPENL  YSAW+GGAILAKVVFPQNQH+TK DYDE+GPS+VH+
Sbjct: 298 NLSASAICPSLVKPPEYMPENLARYSAWLGGAILAKVVFPQNQHVTKGDYDETGPSIVHK 357

Query: 323 KCF 325
           KCF
Sbjct: 358 KCF 360

Essential protein required during embryogenesis and all plant development stages, probably through a chromatin-mediated regulation of gene expression.

Oryza sativa subsp. indica (taxid: 39946)

>sp|P84336|ACTB_CAMDR Actin, cytoplasmic 1 OS=Camelus dromedarius GN=ACTB PE=1 SV=1

 Score =  208 bits (529), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 143/377 (37%), Positives = 184/377 (48%), Gaps = 62/377 (16%)

Query: 3   AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG--------SSSVDNSTLVEDVTV 54
           A VVD GS + KAG A  D AP  V PS + R    G         S V +    +   +
Sbjct: 7   ALVVDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRCIL 65

Query: 55  D---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMF 111
               P+ RG + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MF
Sbjct: 66  TLKYPIERGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMF 124

Query: 112 ETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG-AVQHIASRRFEVGDE 170
           ETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG A+ H   R    G +
Sbjct: 125 ETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 184

Query: 171 L-----------AYEKT------------QKSCEI------------------EQHTLPD 189
           L            Y  T            +K C +                  + + LPD
Sbjct: 185 LTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPD 244

Query: 190 GQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTT 249
           GQVI IG ER+   EALFQPS LG+E+ GI E   ++I     +  + L  NTVL GGTT
Sbjct: 245 GQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTT 304

Query: 250 SMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHIT 308
              G  DR QKE   L  S ++  ++ PPE        YS WIGG+ILA +   Q   I+
Sbjct: 305 MYPGIADRMQKEITALAPSTMKIKIIAPPERK------YSVWIGGSILASLSTFQQMWIS 358

Query: 309 KADYDESGPSVVHRKCF 325
           K +YDESGPS+VHRKCF
Sbjct: 359 KQEYDESGPSIVHRKCF 375

Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells.

Camelus dromedarius (taxid: 9838)

>sp|P53689|ACT_PHARH Actin OS=Phaffia rhodozyma PE=3 SV=1

 Score =  207 bits (527), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 191/377 (50%), Gaps = 62/377 (16%)

Query: 3   AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG--------SSSVDNSTLVEDVTV 54
           A V+D GS + KAG A  D AP  V PS + R    G         S V +    +   +
Sbjct: 7   ALVIDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 65

Query: 55  D---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMF 111
               P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MF
Sbjct: 66  TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMF 124

Query: 112 ETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG-AVQH------IASRR 164
           ETFN   FY + QAVLSLYA GR +G  +D G G     P+ EG A+ H      +A R 
Sbjct: 125 ETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFALPHAILRLDLAGRD 184

Query: 165 F-------------------------EVGDELAY---------EKTQKSCEIEQ-HTLPD 189
                                     ++ ++L Y         +   +S ++E+ + LPD
Sbjct: 185 LTGYLVKCLMERGYPFTTTAEREIVRDIKEKLCYVALDFEQEMQTAAQSSQLEKSYELPD 244

Query: 190 GQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTT 249
           GQVI IG ER+   EALFQPS LGLEA GI E   ++I     +  + L  N VL GGTT
Sbjct: 245 GQVITIGNERFRCPEALFQPSFLGLEAAGIHETTYNSIMKCDLDIRKDLYGNVVLSGGTT 304

Query: 250 SMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHIT 308
             +G  DR QKE   L  S+++  +V PPE        YS WIGG+ILA +   Q+  I+
Sbjct: 305 MYSGIADRMQKEITSLAPSSMKVKIVAPPERK------YSVWIGGSILASLSTFQSMWIS 358

Query: 309 KADYDESGPSVVHRKCF 325
           K +YDE+GPS+VHRKCF
Sbjct: 359 KQEYDEAGPSIVHRKCF 375

Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells.

Phaffia rhodozyma (taxid: 5421)

>sp|P48465|ACT_CRYNH Actin OS=Cryptococcus neoformans var. grubii serotype A (strain H99 / ATCC 208821 / CBS 10515 / FGSC 9487) GN=CNAG_00483 PE=3 SV=2

 Score =  207 bits (526), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 140/377 (37%), Positives = 188/377 (49%), Gaps = 62/377 (16%)

Query: 3   AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG--------SSSVDNSTLVEDVTV 54
           A V+D GS + KAG A  D AP  V PS + R    G         S V +    +   +
Sbjct: 7   ALVIDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 65

Query: 55  D---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMF 111
               P+  G + +WD ME + HH  Y  L      E  +L T+   +PK  RE++ Q+MF
Sbjct: 66  TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKQNREKMTQIMF 124

Query: 112 ETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG---------------- 155
           ETFN   FY S QAVLSLYA GR +G  +D G G     P+ EG                
Sbjct: 125 ETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGFSLPHAILRIDLAGRD 184

Query: 156 ----AVQHIASRRF------------EVGDELAY---------EKTQKSCEIEQ-HTLPD 189
                V+ +  R +            ++ ++L Y         +   +S ++E+ + LPD
Sbjct: 185 LTDYLVKILMERGYLFTTSAEREIVRDIKEKLCYVALDFEQELQTAAQSSQLEKSYELPD 244

Query: 190 GQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTT 249
           GQVI IG ER+   EALFQPS+LGLEA GI E   ++I     +  + L  N V+ GGTT
Sbjct: 245 GQVITIGNERFRCPEALFQPSLLGLEAAGIHETTYNSIMKCDLDIRKDLYGNIVMSGGTT 304

Query: 250 SMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHIT 308
              G  DR QKE   L  S+++  +V PPE        YS WIGG+ILA +   Q   I 
Sbjct: 305 MYNGIADRMQKEITALAPSSMKVKIVSPPERK------YSVWIGGSILASLSTFQQMWIA 358

Query: 309 KADYDESGPSVVHRKCF 325
           K++YDESGPS+VHRKCF
Sbjct: 359 KSEYDESGPSIVHRKCF 375

Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells.

Cryptococcus neoformans var. grubii (taxid: 178876)

>sp|Q9Y707|ACT2_SUIBO Actin-2 OS=Suillus bovinus GN=ACT2 PE=2 SV=1

 Score =  206 bits (524), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 139/377 (36%), Positives = 184/377 (48%), Gaps = 62/377 (16%)

Query: 3   AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG--------SSSVDNSTLVEDVTV 54
           A V+D GS + KAG A  D AP  V PS + R    G         S V +    +   +
Sbjct: 7   ALVIDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 65

Query: 55  D---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMF 111
               P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MF
Sbjct: 66  TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMF 124

Query: 112 ETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG---------------- 155
           ETFN   FY S QAVLSLYA GR +G  +D G G     P+ EG                
Sbjct: 125 ETFNAPAFYVSIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGFSLPHAILRLDLAGRD 184

Query: 156 ----AVQHIASRRF------------EVGDELAY----------EKTQKSCEIEQHTLPD 189
                ++++  R +            ++ ++L Y             Q S   + + LPD
Sbjct: 185 LTDCLIKNLTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAAQSSALEKSYELPD 244

Query: 190 GQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTT 249
           GQVI IG ER+   EALFQP+ LGLE+ GI E   ++I     +  R L  N VL GGTT
Sbjct: 245 GQVITIGNERFRAPEALFQPAFLGLESAGIHETTYNSIYKCDLDIRRDLYGNVVLSGGTT 304

Query: 250 SMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHIT 308
              G  DR QKE   L  S+++  +V PPE        YS WIGG+ILA +   QN   +
Sbjct: 305 MFPGIADRMQKELTSLSPSSMKVKIVAPPERK------YSVWIGGSILASLSTFQNLWCS 358

Query: 309 KADYDESGPSVVHRKCF 325
           K +YDESGP +VHRKCF
Sbjct: 359 KQEYDESGPGIVHRKCF 375

Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells.

Suillus bovinus (taxid: 48563)

>sp|Q25010|ACT3A_HELAM Actin, cytoplasmic A3a OS=Helicoverpa armigera GN=actA3a PE=2 SV=1

 Score =  206 bits (524), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 143/377 (37%), Positives = 184/377 (48%), Gaps = 62/377 (16%)

Query: 3   AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG--------SSSVDNSTLVEDVTV 54
           A VVD GS + KAG A  D AP  V PS + R    G         S V +    +   +
Sbjct: 8   ALVVDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 66

Query: 55  D---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMF 111
               P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MF
Sbjct: 67  TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMF 125

Query: 112 ETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG-AVQHIASRRFEVGDE 170
           ETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG A+ H   R    G +
Sbjct: 126 ETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 185

Query: 171 L-----------AYEKT------------QKSCEI------------------EQHTLPD 189
           L            Y  T            +K C +                  + + LPD
Sbjct: 186 LTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPD 245

Query: 190 GQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTT 249
           GQVI IG ER+   EALFQPS LG+EA+GI E   ++I     +  + L  NTVL GGTT
Sbjct: 246 GQVITIGNERFRCPEALFQPSFLGMEANGIHETTYNSIMKCDVDIRKDLYANTVLSGGTT 305

Query: 250 SMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHIT 308
              G  DR QKE   L  S ++  ++ PPE        YS WIGG+ILA +   Q   I+
Sbjct: 306 MYPGIADRMQKEITALAPSTMKIKIIAPPERK------YSVWIGGSILASLSTFQQMWIS 359

Query: 309 KADYDESGPSVVHRKCF 325
           K +YDESGPS+VHRKCF
Sbjct: 360 KQEYDESGPSIVHRKCF 376

Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells. Multiple isoforms are involved in various cellular functions such as cytoskeleton structure, cell mobility, chromosome movement and muscle contraction.

Helicoverpa armigera (taxid: 29058)

>sp|Q2U7A3|ACT_ASPOR Actin OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=act1 PE=3 SV=1

 Score =  206 bits (523), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 139/377 (36%), Positives = 185/377 (49%), Gaps = 62/377 (16%)

Query: 3   AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG--------SSSVDNSTLVEDVTV 54
           A V+D GS + KAG A  D AP  V PS + R    G         S V +    +   +
Sbjct: 7   AIVIDNGSGMCKAGFA-GDDAPRAVFPSLIGRPRHHGIIVGMGQKDSYVGDEAQSKRGVL 65

Query: 55  D---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMF 111
               P+  G + +WD ME + HH  +  L      E  +L T+   +PK+ RE++ Q+MF
Sbjct: 66  SLHYPIEHGIVNNWDDMEKIWHHTYFNELR-VASEEHPVLLTEAPINPKSNREKMTQIMF 124

Query: 112 ETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG-------AVQHIASRR 164
           ETFN+  FY S QAVLSLYA GR +G  +D G G   + P+ EG       A   +A R 
Sbjct: 125 ETFNVPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSMPHAIARMDLAGRD 184

Query: 165 F-------------------------EVGDELAY---------EKTQKSCEIEQ-HTLPD 189
                                     ++ + L Y         E   KS  IE+ + LPD
Sbjct: 185 LTEYLVRILAERGHSFTTSAEHEIVRDIKERLCYVALDFEQELETAAKSSSIEKSYELPD 244

Query: 190 GQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTT 249
           GQVI IG ER+   EALFQPS+LG+E  GI E   ++I     +  + L  N V+ GGTT
Sbjct: 245 GQVIAIGNERFRAPEALFQPSLLGIEQGGIHETTFNSIQKCDVDVRKDLYGNIVMSGGTT 304

Query: 250 SMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHIT 308
              G  DR  KE   L  S+++   + PPE        YS WIGG+ILA +   Q   I+
Sbjct: 305 LYPGIADRLHKELVNLSPSSMKIKTIAPPERK------YSVWIGGSILASLSTFQQMWIS 358

Query: 309 KADYDESGPSVVHRKCF 325
           K +YDESGPS+VHRKCF
Sbjct: 359 KQEYDESGPSIVHRKCF 375

Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells.

Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516)

>sp|Q9Y702|ACT1_SCHCO Actin-1 OS=Schizophyllum commune GN=ACT1 PE=2 SV=1

 Score =  206 bits (523), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 139/377 (36%), Positives = 184/377 (48%), Gaps = 62/377 (16%)

Query: 3   AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG--------SSSVDNSTLVEDVTV 54
           A V+D GS + KAG A  D AP  V PS + R    G         S V +    +   +
Sbjct: 7   ALVIDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 65

Query: 55  D---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMF 111
               P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MF
Sbjct: 66  TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMF 124

Query: 112 ETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG---------------- 155
           ETFN   FY + QAVLSLYA GR +G  +D G G     P+ EG                
Sbjct: 125 ETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGFALPHAILRLDLAGRD 184

Query: 156 ----AVQHIASRRF------------EVGDELAY----------EKTQKSCEIEQHTLPD 189
                ++++  R +            ++ ++L Y             Q S   + + LPD
Sbjct: 185 LTDFLIKNLMERGYPFTTTAEREIVRDIKEKLCYVALDFEQELQTAAQSSALEKSYELPD 244

Query: 190 GQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTT 249
           GQVI IG ER+   EALFQP+ LGLEA GI E   ++I     +  R L  N VL GGTT
Sbjct: 245 GQVITIGNERFRAPEALFQPAFLGLEAAGIHETTYNSIFKCDLDIRRDLYGNVVLSGGTT 304

Query: 250 SMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHIT 308
              G  DR QKE   L  S+++  +V PPE        YS WIGG+ILA +   QN   +
Sbjct: 305 MFPGIADRMQKELTALSPSSMKVKIVAPPERK------YSVWIGGSILASLSTFQNLWCS 358

Query: 309 KADYDESGPSVVHRKCF 325
           K +YDESGP +VHRKCF
Sbjct: 359 KQEYDESGPGIVHRKCF 375

Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells.

Schizophyllum commune (taxid: 5334)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	325
225450096	361	PREDICTED: actin-related protein 7 [Viti	0.993	0.894	0.785	1e-164
297817402	363	hypothetical protein ARALYDRAFT_486557 [	0.996	0.892	0.769	1e-162
18411737	363	actin-related protein 7 [Arabidopsis tha	0.996	0.892	0.766	1e-162
224106087	363	actin related protein [Populus trichocar	1.0	0.895	0.752	1e-161
255553556	360	Actin, putative [Ricinus communis] gi|22	0.990	0.894	0.763	1e-159
224055172	363	actin related protein [Populus trichocar	1.0	0.895	0.746	1e-158
449436311	361	PREDICTED: actin-related protein 7-like	0.993	0.894	0.760	1e-158
357457909	363	Actin related protein [Medicago truncatu	1.0	0.895	0.732	1e-157
359807411	361	uncharacterized protein LOC100813266 [Gl	0.993	0.894	0.746	1e-157
356534592	361	PREDICTED: actin-related protein 7-like	0.993	0.894	0.752	1e-156

>gi|225450096|ref|XP_002278255.1| PREDICTED: actin-related protein 7 [Vitis vinifera] gi|297736268|emb|CBI24906.3| unnamed protein product [Vitis vinifera]

 Score =  582 bits (1501), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 285/363 (78%), Positives = 305/363 (84%), Gaps = 40/363 (11%)

Query: 1   MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTVDPVVRG 60
           MEA VVDAGSKLLKAG A+PDQAPSM+IP+QMKR LEDG   + +S+L ED+TVDPVVRG
Sbjct: 1   MEAVVVDAGSKLLKAGFAVPDQAPSMIIPTQMKRTLEDGP--LTDSSLFEDITVDPVVRG 58

Query: 61  FIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFY 120
           FIRDWDAMEDLL+HVLY GLGWE GNEGQILFTDPL +PKA REQLVQLMFETFNISGFY
Sbjct: 59  FIRDWDAMEDLLNHVLYTGLGWEMGNEGQILFTDPLSTPKAFREQLVQLMFETFNISGFY 118

Query: 121 SSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVG------------ 168
           +SEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFE+G            
Sbjct: 119 ASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEIGGVDLTKLLAQEL 178

Query: 169 --------------------------DELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTV 202
                                     DELAYEK Q+SC+ EQHTLPDGQVI IG+ERYTV
Sbjct: 179 GKSNPTVNLNITDVERLKEQYSCCAEDELAYEKIQRSCQREQHTLPDGQVINIGRERYTV 238

Query: 203 GEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA 262
           GEALFQPSILGLEAHGIVEQLV +ISTVSSENHRQLLENTVLCGGT SM GFEDRFQKEA
Sbjct: 239 GEALFQPSILGLEAHGIVEQLVRSISTVSSENHRQLLENTVLCGGTASMGGFEDRFQKEA 298

Query: 263 GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHR 322
            LCSSAIRP+LVKPPEYMPENLT+YSAW+GGAILAKVVFPQNQHITK DYDE+GPS+VHR
Sbjct: 299 SLCSSAIRPSLVKPPEYMPENLTMYSAWVGGAILAKVVFPQNQHITKGDYDETGPSIVHR 358

Query: 323 KCF 325
           KCF
Sbjct: 359 KCF 361

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817402|ref|XP_002876584.1| hypothetical protein ARALYDRAFT_486557 [Arabidopsis lyrata subsp. lyrata] gi|297322422|gb|EFH52843.1| hypothetical protein ARALYDRAFT_486557 [Arabidopsis lyrata subsp. lyrata]

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 280/364 (76%), Positives = 307/364 (84%), Gaps = 40/364 (10%)

Query: 1   MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDN-STLVEDVTVDPVVR 59
           MEA VVDAGSKLLKAG AIPDQ+P+M+IPSQMKR+++DGSSS DN +T+ EDVT+DP+ R
Sbjct: 1   MEALVVDAGSKLLKAGAAIPDQSPAMIIPSQMKRMVDDGSSSADNPTTVFEDVTLDPIER 60

Query: 60  GFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGF 119
           G IRDWDAMEDLL +V+Y GLGWEEGNEG ILFTDPLC+PKA+REQLVQLMFETFN+SGF
Sbjct: 61  GLIRDWDAMEDLLRYVVYTGLGWEEGNEGNILFTDPLCTPKAIREQLVQLMFETFNVSGF 120

Query: 120 YSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVG----------- 168
           Y+SEQAVLSLYAVGRISGCTVDIGHGK+DIAPV+EGAVQHIAS+RFE+G           
Sbjct: 121 YASEQAVLSLYAVGRISGCTVDIGHGKMDIAPVLEGAVQHIASKRFELGGTELTKLFAQE 180

Query: 169 ---------------------------DELAYEKTQKSCEIEQHTLPDGQVIRIGKERYT 201
                                      DE AYEKTQ +CEIEQHTLPDGQVI IG+ERY+
Sbjct: 181 LGKSNPSMNLSMSDVEKLKEQYANCAEDEFAYEKTQ-NCEIEQHTLPDGQVISIGRERYS 239

Query: 202 VGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKE 261
           VGEALFQPSILGLE HGIVEQLV  ISTVSSENHRQLLENTVLCGGTTSMTGFE RFQKE
Sbjct: 240 VGEALFQPSILGLEEHGIVEQLVRIISTVSSENHRQLLENTVLCGGTTSMTGFESRFQKE 299

Query: 262 AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVH 321
           A LCSSAIRPTLVKPPEYMPENL +YSAW+GGAILAKVVFPQNQH+TKADYDE+GPSVVH
Sbjct: 300 ANLCSSAIRPTLVKPPEYMPENLGMYSAWVGGAILAKVVFPQNQHVTKADYDETGPSVVH 359

Query: 322 RKCF 325
           RKCF
Sbjct: 360 RKCF 363

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18411737|ref|NP_567105.1| actin-related protein 7 [Arabidopsis thaliana] gi|75300978|sp|Q8L4Y5.1|ARP7_ARATH RecName: Full=Actin-related protein 7 gi|21427469|gb|AAM53247.1|AF507915_1 actin-related protein 7 [Arabidopsis thaliana] gi|20466390|gb|AAM20512.1| actin -like protein [Arabidopsis thaliana] gi|21489920|tpg|DAA00028.1| TPA_exp: actin-related protein 7; AtARP7 [Arabidopsis thaliana] gi|21593327|gb|AAM65276.1| actin-like protein [Arabidopsis thaliana] gi|22136342|gb|AAM91249.1| actin -like protein [Arabidopsis thaliana] gi|332646594|gb|AEE80115.1| actin-related protein 7 [Arabidopsis thaliana]

 Score =  577 bits (1487), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 279/364 (76%), Positives = 307/364 (84%), Gaps = 40/364 (10%)

Query: 1   MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDN-STLVEDVTVDPVVR 59
           MEA VVDAGSK LKAG AIPDQ+P+M+IPSQMKR+++DGSSS DN +T+ EDVT+DP+ R
Sbjct: 1   MEALVVDAGSKFLKAGAAIPDQSPAMIIPSQMKRMVDDGSSSADNPTTVFEDVTLDPIER 60

Query: 60  GFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGF 119
           G IRDWDAMEDLL +V+Y GLGWEEGNEG ILFTDPLC+PKA+REQLVQLMFETFN+SGF
Sbjct: 61  GLIRDWDAMEDLLRYVVYTGLGWEEGNEGNILFTDPLCTPKAIREQLVQLMFETFNVSGF 120

Query: 120 YSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVG----------- 168
           Y+SEQAVLSLYAVGRISGCTVDIGHGKIDIAPV+EGAVQHIAS+RFE+G           
Sbjct: 121 YASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVLEGAVQHIASKRFELGGTELTKLFAQE 180

Query: 169 ---------------------------DELAYEKTQKSCEIEQHTLPDGQVIRIGKERYT 201
                                      DE+AY+KTQ +CEIEQHTLPDGQVI IG+ERY+
Sbjct: 181 LGKTNPSMNLSMSDVEKLKEQYANCAEDEIAYKKTQ-NCEIEQHTLPDGQVISIGRERYS 239

Query: 202 VGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKE 261
           VGEALFQPSILGLE HGIVEQLV  ISTVSSENHRQLLENTVLCGGTTSMTGFE RFQKE
Sbjct: 240 VGEALFQPSILGLEEHGIVEQLVRIISTVSSENHRQLLENTVLCGGTTSMTGFESRFQKE 299

Query: 262 AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVH 321
           A LCSSAIRPTLVKPPEYMPENL +YSAW+GGAILAKVVFPQNQH+TKADYDE+GPSVVH
Sbjct: 300 ANLCSSAIRPTLVKPPEYMPENLGMYSAWVGGAILAKVVFPQNQHVTKADYDETGPSVVH 359

Query: 322 RKCF 325
           RKCF
Sbjct: 360 RKCF 363

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106087|ref|XP_002314038.1| actin related protein [Populus trichocarpa] gi|222850446|gb|EEE87993.1| actin related protein [Populus trichocarpa]

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 273/363 (75%), Positives = 306/363 (84%), Gaps = 38/363 (10%)

Query: 1   MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTVDPVVRG 60
           MEAAV+DAG++LLKAG A+PDQAP M+IPSQMKR++EDG+S  +N ++ EDVTVDPVVRG
Sbjct: 1   MEAAVIDAGTQLLKAGTAVPDQAPPMIIPSQMKRMVEDGTSGDNNESVFEDVTVDPVVRG 60

Query: 61  FIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFY 120
           +IRDWDAMEDLLH+VLY  LGWEEGNEGQ+LFTDPLC+PKAVREQLVQLMFETFN+SGFY
Sbjct: 61  YIRDWDAMEDLLHYVLYTSLGWEEGNEGQVLFTDPLCTPKAVREQLVQLMFETFNVSGFY 120

Query: 121 SSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVG------------ 168
           +SEQAVLSLYAVGRISGCTVDIGHGKIDIAPV+EGAVQHIASRRFE+G            
Sbjct: 121 ASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVLEGAVQHIASRRFEIGGVDLTKLLAQEL 180

Query: 169 --------------------------DELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTV 202
                                     DELAYEKTQ+S + E+HTLPDGQVIRI +E+YT+
Sbjct: 181 SKSNLLVNLNASDAEMLKVKYSCCAEDELAYEKTQRSSDTEEHTLPDGQVIRIRREKYTI 240

Query: 203 GEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA 262
           GEALFQPSILG+EA GIVEQLV +ISTVSSENHRQLLENTVLCGG TSM GFEDRFQKEA
Sbjct: 241 GEALFQPSILGIEALGIVEQLVRSISTVSSENHRQLLENTVLCGGITSMPGFEDRFQKEA 300

Query: 263 GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHR 322
            LCSSAIRP+LVKPPEYMP+ LT YSAW+GGAILAKVVFPQNQH+TK DYDE+GPS+VHR
Sbjct: 301 SLCSSAIRPSLVKPPEYMPDKLTEYSAWVGGAILAKVVFPQNQHVTKGDYDETGPSIVHR 360

Query: 323 KCF 325
           KCF
Sbjct: 361 KCF 363

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553556|ref|XP_002517819.1| Actin, putative [Ricinus communis] gi|223543091|gb|EEF44626.1| Actin, putative [Ricinus communis]

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 277/363 (76%), Positives = 303/363 (83%), Gaps = 41/363 (11%)

Query: 1   MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTVDPVVRG 60
           MEAAV+DAGSKLLKAG A+PDQAP ++IP+QMK++LEDGSS  DNS   EDV VDPVVRG
Sbjct: 1   MEAAVIDAGSKLLKAGTAVPDQAPPIIIPTQMKQMLEDGSSG-DNS--FEDVNVDPVVRG 57

Query: 61  FIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFY 120
           FIRDWDAMEDL+ +VLY GL WEEGNEGQILFTDPLC+PK+VREQLVQLMFETFN+SGFY
Sbjct: 58  FIRDWDAMEDLMQYVLYTGLEWEEGNEGQILFTDPLCTPKSVREQLVQLMFETFNVSGFY 117

Query: 121 SSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVG------------ 168
           +SEQAVLSLYA+GRISGCTVDIGHGKIDIAPVIEGAVQHIASRR+E+G            
Sbjct: 118 ASEQAVLSLYAIGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRYEIGGIDLTKLLVQEL 177

Query: 169 --------------------------DELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTV 202
                                     DE+AYEK Q+S E E+HTLPDGQVI+IG+ERYTV
Sbjct: 178 GKSNPSVNLNVSDVEIIKEKYSCCAEDEVAYEKIQQSSETEEHTLPDGQVIQIGRERYTV 237

Query: 203 GEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA 262
           GEALFQPSILGLEAHGIVEQLV TISTVSSEN RQLLENTVLCGG TSM GFEDRFQKEA
Sbjct: 238 GEALFQPSILGLEAHGIVEQLVRTISTVSSENQRQLLENTVLCGGITSMPGFEDRFQKEA 297

Query: 263 GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHR 322
            LCSSAIRP+LVKPPEYMP  LT YSAW+GGAILAKVVFPQNQH+TK+DYDE+GPSVVHR
Sbjct: 298 NLCSSAIRPSLVKPPEYMPAELTQYSAWVGGAILAKVVFPQNQHVTKSDYDEAGPSVVHR 357

Query: 323 KCF 325
           KCF
Sbjct: 358 KCF 360

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055172|ref|XP_002298428.1| actin related protein [Populus trichocarpa] gi|222845686|gb|EEE83233.1| actin related protein [Populus trichocarpa]

 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 271/363 (74%), Positives = 302/363 (83%), Gaps = 38/363 (10%)

Query: 1   MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTVDPVVRG 60
           MEAAV+DAGS+LLKAG A+PDQAP M+IPSQM RV+EDG+S  +N ++ EDVTVDPVVRG
Sbjct: 1   MEAAVIDAGSQLLKAGSAVPDQAPPMIIPSQMIRVVEDGTSGDNNESVFEDVTVDPVVRG 60

Query: 61  FIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFY 120
            IR+WDAMEDLL +VLY GL WEEGNEGQILFT+PLC+PKAVREQLVQLMFETFN+SGFY
Sbjct: 61  HIRNWDAMEDLLQYVLYGGLDWEEGNEGQILFTEPLCTPKAVREQLVQLMFETFNVSGFY 120

Query: 121 SSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVG------------ 168
           +SEQAVLSLYAVGRISGCTVDIGHGKIDIAPV+EGAVQHIASRR+E+G            
Sbjct: 121 ASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVLEGAVQHIASRRYEIGGVDLTKLLAQEL 180

Query: 169 --------------------------DELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTV 202
                                     DELAYEKTQ+S + E+HTLPDGQVIRIG+E+YTV
Sbjct: 181 GKSNPLVNLNASDVEMLKVKYSCCAEDELAYEKTQRSSDEEEHTLPDGQVIRIGREKYTV 240

Query: 203 GEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA 262
           GEALFQPSILG+EAHGIVEQL  +IS VSSENHRQLLENTVLCGG TSM GFEDRFQKEA
Sbjct: 241 GEALFQPSILGIEAHGIVEQLARSISIVSSENHRQLLENTVLCGGITSMPGFEDRFQKEA 300

Query: 263 GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHR 322
            LCSSAI P+LVKPPEYMP+ LT YSAW+GGAILAKVVFPQNQH+TK DYDE+GPS+VHR
Sbjct: 301 SLCSSAISPSLVKPPEYMPDKLTEYSAWVGGAILAKVVFPQNQHVTKGDYDETGPSIVHR 360

Query: 323 KCF 325
           KCF
Sbjct: 361 KCF 363

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436311|ref|XP_004135936.1| PREDICTED: actin-related protein 7-like [Cucumis sativus] gi|449488840|ref|XP_004158188.1| PREDICTED: actin-related protein 7-like [Cucumis sativus]

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 276/363 (76%), Positives = 298/363 (82%), Gaps = 40/363 (11%)

Query: 1   MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTVDPVVRG 60
           MEAAVVD GSKLLKAGPAIPDQAPSM+IP+ MKR+ ED   SV  ++  EDVTVDPVVRG
Sbjct: 1   MEAAVVDPGSKLLKAGPAIPDQAPSMIIPTHMKRMPED--ESVTENSQFEDVTVDPVVRG 58

Query: 61  FIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFY 120
           FI+DWDAMEDLLHHVLY GLGWE GNEGQILFTDPL +PKA+REQLVQLMFETFNISGFY
Sbjct: 59  FIKDWDAMEDLLHHVLYTGLGWEIGNEGQILFTDPLSTPKAIREQLVQLMFETFNISGFY 118

Query: 121 SSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVG------------ 168
           +SEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAV HIASRR E+G            
Sbjct: 119 ASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVHHIASRRIEIGGIDLTRLLAQEL 178

Query: 169 --------------------------DELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTV 202
                                     DELAY K   SC++E HTLPDGQVI +G+ERYTV
Sbjct: 179 GKSHPMVNISTADVEKIKELYACCAEDELAYSKIGDSCQLETHTLPDGQVITVGRERYTV 238

Query: 203 GEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA 262
           GEALFQP ILGL+ HGIVEQLV TISTVSS+NHRQLLENTVLCGGT+SMTGFE+RFQKEA
Sbjct: 239 GEALFQPQILGLDTHGIVEQLVRTISTVSSDNHRQLLENTVLCGGTSSMTGFEERFQKEA 298

Query: 263 GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHR 322
            LCSSA+RP LVK PEYMPENL+LYSAWIGGAILAKVVFPQNQHITKADYDE+GPS+VHR
Sbjct: 299 SLCSSAVRPALVKAPEYMPENLSLYSAWIGGAILAKVVFPQNQHITKADYDENGPSIVHR 358

Query: 323 KCF 325
           KCF
Sbjct: 359 KCF 361

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357457909|ref|XP_003599235.1| Actin related protein [Medicago truncatula] gi|355488283|gb|AES69486.1| Actin related protein [Medicago truncatula]

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 266/363 (73%), Positives = 304/363 (83%), Gaps = 38/363 (10%)

Query: 1   MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTVDPVVRG 60
           MEAAV+DAGS LLKAG AIPDQ P+M+IPSQMKR++++ + + +   +V+DV V+PVVRG
Sbjct: 1   MEAAVIDAGSSLLKAGFAIPDQTPAMIIPSQMKRMVDETNDNGNGQLVVDDVAVEPVVRG 60

Query: 61  FIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFY 120
           ++RDWDAMEDLL++VLY+GLGWE GNEGQILFTDPLC+PKA +EQLVQLMFETFNISGFY
Sbjct: 61  YVRDWDAMEDLLNYVLYSGLGWEIGNEGQILFTDPLCTPKANKEQLVQLMFETFNISGFY 120

Query: 121 SSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVG------------ 168
           +SEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAV HIASRRFE G            
Sbjct: 121 ASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVNHIASRRFEFGGTDLTNFLAQEL 180

Query: 169 --------------------------DELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTV 202
                                     D+LAY+KT+ SC +E HTLPDGQVI IG+ERYTV
Sbjct: 181 GKSNPLVNISISDVEKIKQQYSCCAEDDLAYQKTEDSCPVETHTLPDGQVITIGRERYTV 240

Query: 203 GEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA 262
           GEALFQPS+LGLE HGIVEQLV TISTV+S+NHRQLLENTV+CGGT+SMTGFEDRFQKE+
Sbjct: 241 GEALFQPSLLGLETHGIVEQLVRTISTVTSDNHRQLLENTVVCGGTSSMTGFEDRFQKES 300

Query: 263 GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHR 322
            LCSSA+RPTLVKPPEYMPENLT+YSAW+GGAILAKVVFPQNQH+TKADYDE+GPS+VHR
Sbjct: 301 LLCSSAVRPTLVKPPEYMPENLTMYSAWVGGAILAKVVFPQNQHVTKADYDENGPSIVHR 360

Query: 323 KCF 325
           KCF
Sbjct: 361 KCF 363

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807411|ref|NP_001241387.1| uncharacterized protein LOC100813266 [Glycine max] gi|255640268|gb|ACU20424.1| unknown [Glycine max]

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 271/363 (74%), Positives = 304/363 (83%), Gaps = 40/363 (11%)

Query: 1   MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTVDPVVRG 60
           MEAAVVD GSKLLKAG AIPDQ P+M+IP+QMK++L+DGS  V +++L ++VTVDPVVRG
Sbjct: 1   MEAAVVDVGSKLLKAGFAIPDQTPAMIIPTQMKQLLDDGS--VADNSLADNVTVDPVVRG 58

Query: 61  FIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFY 120
           FIRDWDA+EDLLHHVLY GLGWE GNEGQILFTDPLC+PKA +EQLVQLMFETFNISGFY
Sbjct: 59  FIRDWDAIEDLLHHVLYTGLGWEIGNEGQILFTDPLCTPKANKEQLVQLMFETFNISGFY 118

Query: 121 SSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVG------------ 168
           +SEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAV HIASRRFE G            
Sbjct: 119 ASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVHHIASRRFEFGGTDLTNFLAQEL 178

Query: 169 --------------------------DELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTV 202
                                     DELAY+KT+ SC +E+HTLPDGQVI IG+ERYTV
Sbjct: 179 GKSNPQVNISMSDVEKIKELYSCCAEDELAYQKTEYSCPVEKHTLPDGQVIAIGRERYTV 238

Query: 203 GEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA 262
           GEALFQP +LGLEAHGIV+QLV  ISTVSS+N RQLLENTV+CGGT+SMTGFE+RFQKE+
Sbjct: 239 GEALFQPCLLGLEAHGIVDQLVRAISTVSSDNQRQLLENTVVCGGTSSMTGFEERFQKES 298

Query: 263 GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHR 322
            L SSA++PTLVKPPEYMPENLT+YSAW+GGAILAKVVFPQNQHITKADYDE+GPS+VHR
Sbjct: 299 SLSSSAVQPTLVKPPEYMPENLTMYSAWVGGAILAKVVFPQNQHITKADYDETGPSIVHR 358

Query: 323 KCF 325
           KCF
Sbjct: 359 KCF 361

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534592|ref|XP_003535837.1| PREDICTED: actin-related protein 7-like [Glycine max]

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 273/363 (75%), Positives = 299/363 (82%), Gaps = 40/363 (11%)

Query: 1   MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTVDPVVRG 60
           MEAAVVD GS LLKAG AIPDQAP+M+IP+QMKR+L+DGS + DN   V+DV VDPV RG
Sbjct: 1   MEAAVVDPGSSLLKAGFAIPDQAPAMIIPTQMKRMLDDGSMT-DNPA-VDDVAVDPVCRG 58

Query: 61  FIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFY 120
           ++ DWDAMEDLLH+VLY G GWE GNEGQILFTDPLC+PKA +EQLVQLMFETFNISGFY
Sbjct: 59  YVSDWDAMEDLLHYVLYTGFGWEMGNEGQILFTDPLCTPKANKEQLVQLMFETFNISGFY 118

Query: 121 SSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVG------------ 168
           +SEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAV HIASRRFE G            
Sbjct: 119 ASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVNHIASRRFEFGGIDLTNFLAQEL 178

Query: 169 --------------------------DELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTV 202
                                     DELAY+KTQ SC +E HTLPDGQVI IG+ERYTV
Sbjct: 179 GKSNPLVNISISDVENIKQQYSCCVEDELAYQKTQGSCPVETHTLPDGQVITIGRERYTV 238

Query: 203 GEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA 262
           GEALFQP +LGLEAHGIVEQLVH ISTVSSENHRQLLENTV+CGGT+SMTGFE+RFQKE+
Sbjct: 239 GEALFQPCLLGLEAHGIVEQLVHAISTVSSENHRQLLENTVVCGGTSSMTGFEERFQKES 298

Query: 263 GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHR 322
            L SSAIRPTLVKPPEYMPENLT+ SAW+GGAILAKVVFPQNQH+TKADYDE+GPS+VHR
Sbjct: 299 SLSSSAIRPTLVKPPEYMPENLTMNSAWVGGAILAKVVFPQNQHVTKADYDETGPSIVHR 358

Query: 323 KCF 325
           KCF
Sbjct: 359 KCF 361

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	325
TAIR|locus:2101866	363	ARP7 "AT3G60830" [Arabidopsis	0.516	0.462	0.828	5.8e-150
UNIPROTKB|F1MRD0	375	ACTB "Actin, cytoplasmic 1, N-	0.458	0.397	0.477	7.8e-54
UNIPROTKB|F1P476	386	ACTG2 "Actin, gamma-enteric sm	0.461	0.388	0.443	8.7e-54
FB|FBgn0000042	376	Act5C "Actin 5C" [Drosophila m	0.458	0.396	0.477	1.6e-53
FB|FBgn0000043	376	Act42A "Actin 42A" [Drosophila	0.458	0.396	0.477	2.6e-53
UNIPROTKB|P60706	375	ACTB "Actin, cytoplasmic 1" [G	0.458	0.397	0.471	2.6e-53
UNIPROTKB|P60712	375	ACTB "Actin, cytoplasmic 1" [B	0.458	0.397	0.471	2.6e-53
UNIPROTKB|O18840	375	ACTB "Actin, cytoplasmic 1" [C	0.458	0.397	0.471	2.6e-53
UNIPROTKB|P60709	375	ACTB "Actin, cytoplasmic 1" [H	0.458	0.397	0.471	2.6e-53
UNIPROTKB|Q6QAQ1	375	ACTB "Actin, cytoplasmic 1" [S	0.458	0.397	0.471	2.6e-53

TAIR|locus:2101866 ARP7 "AT3G60830" [Arabidopsis thaliana (taxid:3702)]

 Score = 744 (267.0 bits), Expect = 5.8e-150, Sum P(2) = 5.8e-150
 Identities = 140/169 (82%), Positives = 157/169 (92%)

Query:     1 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLV-EDVTVDPVVR 59
             MEA VVDAGSK LKAG AIPDQ+P+M+IPSQMKR+++DGSSS DN T V EDVT+DP+ R
Sbjct:     1 MEALVVDAGSKFLKAGAAIPDQSPAMIIPSQMKRMVDDGSSSADNPTTVFEDVTLDPIER 60

Query:    60 GFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGF 119
             G IRDWDAMEDLL +V+Y GLGWEEGNEG ILFTDPLC+PKA+REQLVQLMFETFN+SGF
Sbjct:    61 GLIRDWDAMEDLLRYVVYTGLGWEEGNEGNILFTDPLCTPKAIREQLVQLMFETFNVSGF 120

Query:   120 YSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVG 168
             Y+SEQAVLSLYAVGRISGCTVDIGHGKIDIAPV+EGAVQHIAS+RFE+G
Sbjct:   121 YASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVLEGAVQHIASKRFELG 169

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005634 "nucleus" evidence=IDA

GO:0006325 "chromatin organization" evidence=TAS

GO:0009653 "anatomical structure morphogenesis" evidence=IMP

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;IMP

GO:0010227 "floral organ abscission" evidence=IMP

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0048366 "leaf development" evidence=RCA

GO:0048825 "cotyledon development" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

GO:0051301 "cell division" evidence=RCA

UNIPROTKB|F1MRD0 ACTB "Actin, cytoplasmic 1, N-terminally processed" [Bos taurus (taxid:9913)]

 Score = 334 (122.6 bits), Expect = 7.8e-54, Sum P(2) = 7.8e-54
 Identities = 75/157 (47%), Positives = 95/157 (60%)

Query:   170 ELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTIST 229
             E+A   +  S E + + LPDGQVI IG ER+   EALFQPS LG+E+ GI E   ++I  
Sbjct:   226 EMATAASSSSLE-KSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMK 284

Query:   230 VSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAG-LCSSAIRPTLVKPPEYMPENLTLYS 288
                +  + L  NTVL GGTT   G EDR QKE   L  S ++  ++ PPE        YS
Sbjct:   285 CDVDIRKDLYANTVLSGGTTMYPGIEDRMQKEINDLAPSTMKIKIIAPPERK------YS 338

Query:   289 AWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF 325
              WIGG+ILA +   Q   I+K +YDESGPS+VHRKCF
Sbjct:   339 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1P476 ACTG2 "Actin, gamma-enteric smooth muscle" [Gallus gallus (taxid:9031)]

 Score = 317 (116.6 bits), Expect = 8.7e-54, Sum P(3) = 8.7e-54
 Identities = 70/158 (44%), Positives = 93/158 (58%)

Query:   169 DELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTIS 228
             +E+A   +  S E + + LPDGQVI IG ER+   E LFQPS +G+E+ GI E   ++I 
Sbjct:   236 NEMATAASSSSLE-KSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIM 294

Query:   229 TVSSENHRQLLENTVLCGGTTSMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLY 287
                 +  + L  N VL GGTT   G  DR QKE   L  S ++  ++ PPE        Y
Sbjct:   295 KCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK------Y 348

Query:   288 SAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF 325
             S WIGG+ILA +   Q   I+K +YDE+GPS+VHRKCF
Sbjct:   349 SVWIGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 386

GO:0005524 "ATP binding" evidence=IEA

GO:0008217 "regulation of blood pressure" evidence=IEA

GO:0009615 "response to virus" evidence=IEA

GO:0014829 "vascular smooth muscle contraction" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0030485 "smooth muscle contractile fiber" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0072144 "glomerular mesangial cell development" evidence=IEA

FB|FBgn0000042 Act5C "Actin 5C" [Drosophila melanogaster (taxid:7227)]

 Score = 332 (121.9 bits), Expect = 1.6e-53, Sum P(2) = 1.6e-53
 Identities = 75/157 (47%), Positives = 94/157 (59%)

Query:   170 ELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTIST 229
             E+A   +  S E + + LPDGQVI IG ER+   EALFQPS LG+EA GI E   ++I  
Sbjct:   227 EMATAASSSSLE-KSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMK 285

Query:   230 VSSENHRQLLENTVLCGGTTSMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYS 288
                +  + L  NTVL GGTT   G  DR QKE   L  S ++  ++ PPE        YS
Sbjct:   286 CDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK------YS 339

Query:   289 AWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF 325
              WIGG+ILA +   Q   I+K +YDESGPS+VHRKCF
Sbjct:   340 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0005884 "actin filament" evidence=ISS;NAS

GO:0007010 "cytoskeleton organization" evidence=ISS

GO:0007291 "sperm individualization" evidence=IEP

GO:0005524 "ATP binding" evidence=IEA

GO:0000910 "cytokinesis" evidence=IMP

GO:0031011 "Ino80 complex" evidence=IDA

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0032507 "maintenance of protein location in cell" evidence=IMP

GO:0005811 "lipid particle" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0016319 "mushroom body development" evidence=IMP

GO:0002121 "inter-male aggressive behavior" evidence=IMP

FB|FBgn0000043 Act42A "Actin 42A" [Drosophila melanogaster (taxid:7227)]

 Score = 330 (121.2 bits), Expect = 2.6e-53, Sum P(2) = 2.6e-53
 Identities = 75/157 (47%), Positives = 94/157 (59%)

Query:   170 ELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTIST 229
             E+A   +  S E + + LPDGQVI IG ER+   E+LFQPS LG+EA GI E   ++I  
Sbjct:   227 EMATAASSSSLE-KSYELPDGQVITIGNERFRCPESLFQPSFLGMEACGIHETTYNSIMK 285

Query:   230 VSSENHRQLLENTVLCGGTTSMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYS 288
                +  + L  NTVL GGTT   G  DR QKE   L  S ++  +V PPE        YS
Sbjct:   286 CDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIVAPPERK------YS 339

Query:   289 AWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF 325
              WIGG+ILA +   Q   I+K +YDESGPS+VHRKCF
Sbjct:   340 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0005884 "actin filament" evidence=ISS;NAS

GO:0007010 "cytoskeleton organization" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0000910 "cytokinesis" evidence=IMP

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

UNIPROTKB|P60706 ACTB "Actin, cytoplasmic 1" [Gallus gallus (taxid:9031)]

 Score = 329 (120.9 bits), Expect = 2.6e-53, Sum P(2) = 2.6e-53
 Identities = 74/157 (47%), Positives = 94/157 (59%)

Query:   170 ELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTIST 229
             E+A   +  S E + + LPDGQVI IG ER+   EALFQPS LG+E+ GI E   ++I  
Sbjct:   226 EMATAASSSSLE-KSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMK 284

Query:   230 VSSENHRQLLENTVLCGGTTSMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYS 288
                +  + L  NTVL GGTT   G  DR QKE   L  S ++  ++ PPE        YS
Sbjct:   285 CDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK------YS 338

Query:   289 AWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF 325
              WIGG+ILA +   Q   I+K +YDESGPS+VHRKCF
Sbjct:   339 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

UNIPROTKB|P60712 ACTB "Actin, cytoplasmic 1" [Bos taurus (taxid:9913)]

 Score = 329 (120.9 bits), Expect = 2.6e-53, Sum P(2) = 2.6e-53
 Identities = 74/157 (47%), Positives = 94/157 (59%)

Query:   170 ELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTIST 229
             E+A   +  S E + + LPDGQVI IG ER+   EALFQPS LG+E+ GI E   ++I  
Sbjct:   226 EMATAASSSSLE-KSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMK 284

Query:   230 VSSENHRQLLENTVLCGGTTSMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYS 288
                +  + L  NTVL GGTT   G  DR QKE   L  S ++  ++ PPE        YS
Sbjct:   285 CDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK------YS 338

Query:   289 AWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF 325
              WIGG+ILA +   Q   I+K +YDESGPS+VHRKCF
Sbjct:   339 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375

GO:0051086 "chaperone mediated protein folding independent of cofactor" evidence=TAS

GO:0006457 "protein folding" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=ISS

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|O18840 ACTB "Actin, cytoplasmic 1" [Canis lupus familiaris (taxid:9615)]

 Score = 329 (120.9 bits), Expect = 2.6e-53, Sum P(2) = 2.6e-53
 Identities = 74/157 (47%), Positives = 94/157 (59%)

Query:   170 ELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTIST 229
             E+A   +  S E + + LPDGQVI IG ER+   EALFQPS LG+E+ GI E   ++I  
Sbjct:   226 EMATAASSSSLE-KSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMK 284

Query:   230 VSSENHRQLLENTVLCGGTTSMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYS 288
                +  + L  NTVL GGTT   G  DR QKE   L  S ++  ++ PPE        YS
Sbjct:   285 CDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK------YS 338

Query:   289 AWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF 325
              WIGG+ILA +   Q   I+K +YDESGPS+VHRKCF
Sbjct:   339 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375

GO:0070688 "MLL5-L complex" evidence=IEA

GO:0050998 "nitric-oxide synthase binding" evidence=IEA

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=IEA

GO:0030957 "Tat protein binding" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|P60709 ACTB "Actin, cytoplasmic 1" [Homo sapiens (taxid:9606)]

 Score = 329 (120.9 bits), Expect = 2.6e-53, Sum P(2) = 2.6e-53
 Identities = 74/157 (47%), Positives = 94/157 (59%)

Query:   170 ELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTIST 229
             E+A   +  S E + + LPDGQVI IG ER+   EALFQPS LG+E+ GI E   ++I  
Sbjct:   226 EMATAASSSSLE-KSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMK 284

Query:   230 VSSENHRQLLENTVLCGGTTSMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYS 288
                +  + L  NTVL GGTT   G  DR QKE   L  S ++  ++ PPE        YS
Sbjct:   285 CDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK------YS 338

Query:   289 AWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF 325
              WIGG+ILA +   Q   I+K +YDESGPS+VHRKCF
Sbjct:   339 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375

GO:0005524 "ATP binding" evidence=IEA

GO:0014069 "postsynaptic density" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=TAS

GO:0006928 "cellular component movement" evidence=TAS

GO:0019894 "kinesin binding" evidence=IPI

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=IDA

GO:0005737 "cytoplasm" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005856 "cytoskeleton" evidence=TAS

GO:0030529 "ribonucleoprotein complex" evidence=IDA

GO:0070688 "MLL5-L complex" evidence=IDA

GO:0070062 "extracellular vesicular exosome" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0006457 "protein folding" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0034329 "cell junction assembly" evidence=TAS

GO:0034332 "adherens junction organization" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0045216 "cell-cell junction organization" evidence=TAS

GO:0051084 "'de novo' posttranslational protein folding" evidence=TAS

GO:0050998 "nitric-oxide synthase binding" evidence=IPI

GO:0030957 "Tat protein binding" evidence=IPI

UNIPROTKB|Q6QAQ1 ACTB "Actin, cytoplasmic 1" [Sus scrofa (taxid:9823)]

 Score = 329 (120.9 bits), Expect = 2.6e-53, Sum P(2) = 2.6e-53
 Identities = 74/157 (47%), Positives = 94/157 (59%)

Query:   170 ELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTIST 229
             E+A   +  S E + + LPDGQVI IG ER+   EALFQPS LG+E+ GI E   ++I  
Sbjct:   226 EMATAASSSSLE-KSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMK 284

Query:   230 VSSENHRQLLENTVLCGGTTSMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYS 288
                +  + L  NTVL GGTT   G  DR QKE   L  S ++  ++ PPE        YS
Sbjct:   285 CDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK------YS 338

Query:   289 AWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF 325
              WIGG+ILA +   Q   I+K +YDESGPS+VHRKCF
Sbjct:   339 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375

GO:0070688 "MLL5-L complex" evidence=IEA

GO:0050998 "nitric-oxide synthase binding" evidence=IEA

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=IEA

GO:0030957 "Tat protein binding" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P84185	ACT5C_ANOGA	No assigned EC number	0.3793	0.9692	0.8377	yes	no
O18840	ACTB_CANFA	No assigned EC number	0.3766	0.9692	0.84	yes	no
Q5R1X3	ACTB_PANTR	No assigned EC number	0.3766	0.9692	0.84	yes	no
Q6NVA9	ACTB_XENTR	No assigned EC number	0.3766	0.9692	0.84	yes	no
P60710	ACTB_MOUSE	No assigned EC number	0.3766	0.9692	0.84	yes	no
A3ANB5	ARP7_ORYSJ	No assigned EC number	0.6611	0.9907	0.8944	yes	no
P60712	ACTB_BOVIN	No assigned EC number	0.3766	0.9692	0.84	yes	no
P60708	ACTB_HORSE	No assigned EC number	0.3766	0.9692	0.84	yes	no
P60706	ACTB_CHICK	No assigned EC number	0.3766	0.9692	0.84	yes	no
P48975	ACTB_CRIGR	No assigned EC number	0.3766	0.9692	0.84	yes	no
P60709	ACTB_HUMAN	No assigned EC number	0.3766	0.9692	0.84	yes	no
Q6P378	ACTG_XENTR	No assigned EC number	0.3766	0.9692	0.84	yes	no
Q71FK5	ACTB_CAVPO	No assigned EC number	0.3766	0.9692	0.84	yes	no
A2XMK6	ARP7_ORYSI	No assigned EC number	0.6611	0.9907	0.8944	N/A	no
P60711	ACTB_RAT	No assigned EC number	0.3766	0.9692	0.84	yes	no
Q8L4Y5	ARP7_ARATH	No assigned EC number	0.7664	0.9969	0.8925	yes	no
P29751	ACTB_RABIT	No assigned EC number	0.3766	0.9692	0.84	yes	no
Q6QAQ1	ACTB_PIG	No assigned EC number	0.3766	0.9692	0.84	yes	no
P10987	ACT1_DROME	No assigned EC number	0.3793	0.9692	0.8377	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00028776001 SubName- Full=Chromosome chr13 scaffold_45, whole genome shotgun sequence; (361 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	325
pfam00022	367	pfam00022, Actin, Actin	1e-75
smart00268	373	smart00268, ACTIN, Actin	7e-73
PTZ00004	378	PTZ00004, PTZ00004, actin-2; Provisional	1e-67
PTZ00281	376	PTZ00281, PTZ00281, actin; Provisional	5e-63
PTZ00452	375	PTZ00452, PTZ00452, actin; Provisional	2e-45
PTZ00466	380	PTZ00466, PTZ00466, actin-like protein; Provisiona	3e-45
PTZ00280	414	PTZ00280, PTZ00280, Actin-related protein 3; Provi	4e-30
COG5277	444	COG5277, COG5277, Actin and related proteins [Cyto	2e-28
COG5277	444	COG5277, COG5277, Actin and related proteins [Cyto	2e-21
cd00012	185	cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-	6e-14

>gnl|CDD|200935 pfam00022, Actin, Actin

 Score =  236 bits (604), Expect = 1e-75
 Identities = 129/370 (34%), Positives = 177/370 (47%), Gaps = 54/370 (14%)

Query: 3   AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDN-----STLVEDVTV-DP 56
           A V+D GS   KAG A  + AP  VIPS + R    G            +    + V  P
Sbjct: 5   ALVIDNGSGTTKAGFA-GEDAPRAVIPSVVGRPRGRGVMVKYYVGDEALSKRPGLEVRYP 63

Query: 57  VVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNI 116
           +  G + +WDAME +  H  +  L  +   E  +L T+P  +P A RE+  ++MFETF +
Sbjct: 64  IEDGIVENWDAMEKIWEHTFFEELRVDP-EEHPLLLTEPPLNPPANREKATEIMFETFGV 122

Query: 117 SGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEV-GDELAYEK 175
              Y ++QAVLS YA GR +G  VD G G   + PV EG V   A RR ++ GD+L    
Sbjct: 123 PALYLAKQAVLSAYASGRTTGLVVDSGAGVTSVVPVYEGYVLQKAIRRSDLAGDDLTDYL 182

Query: 176 TQ-----------------------KSCEIEQH----------------TLPDGQVIRIG 196
            +                         C +                    LPDG VI +G
Sbjct: 183 RKLLSSRTYSFNTYAEEEVVRDIKESLCYVSDDPFGDTAASSSPPTVSYELPDGYVIILG 242

Query: 197 KERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFED 256
            ER+ V E LF PS++G E+ GI E +  +I+    +    LL N V+ GGTT   GF +
Sbjct: 243 NERFRVPEILFNPSLIGSESAGIPELIYDSINACDVDLRPSLLANIVVTGGTTLFPGFTE 302

Query: 257 RFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKV-VFPQNQHITKADYDES 315
           R +KE     + + P+ VK     P N   YSAWIGG+ILA +  F Q   ++K +Y+E 
Sbjct: 303 RLEKEL----AQLAPSGVKVKIIAPPNERKYSAWIGGSILASLGTFQQ-MWVSKQEYEEH 357

Query: 316 GPSVVHRKCF 325
           G SVV RKCF
Sbjct: 358 GSSVVERKCF 367

Length = 367

>gnl|CDD|214592 smart00268, ACTIN, Actin

 Score =  229 bits (586), Expect = 7e-73
 Identities = 123/377 (32%), Positives = 182/377 (48%), Gaps = 64/377 (16%)

Query: 5   VVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTL-VED---------VTV 54
           V+D GS  +KAG A  +  P +V PS + R  +      D   + V D            
Sbjct: 5   VIDNGSGTIKAGFA-GEDFPQVVFPSIVGRPKDGKGMVGDAKDIFVGDEAQEKRGGLELK 63

Query: 55  DPVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETF 114
            P+  G + +WD ME +  +  +  L  E   E  +L T+P  +PK+ RE+++++MFETF
Sbjct: 64  YPIENGIVENWDDMEKIWDYTFFNELRVEP-EEHPVLLTEPPMNPKSNREKILEIMFETF 122

Query: 115 NISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAV-------QHIASR---- 163
           N    Y + QAVLSLYA GR +G  +D G G   + PV++G V         IA R    
Sbjct: 123 NFPALYIAIQAVLSLYASGRTTGLVIDSGDGVTHVVPVVDGYVLPHAIKRIDIAGRDITD 182

Query: 164 -----------------RFEVGDE-----------------LAYEKTQKSCEIEQHTLPD 189
                             FE+  E                 LA E ++ S   + + LPD
Sbjct: 183 YLKELLSERGYQFNSSAEFEIVREIKEKLCYVAEDFEKEMKLARESSESSKLEKTYELPD 242

Query: 190 GQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTT 249
           G  I++G ER+ + E LF P ++GLE  GI E +  +I     +  + L EN VL GG+T
Sbjct: 243 GNTIKVGNERFRIPEILFSPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGST 302

Query: 250 SMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHIT 308
            + GF +R +KE   L    ++  ++ PPE        YS W+GG+ILA +   ++  IT
Sbjct: 303 LIPGFGERLEKELKQLAPKKLKVKVIAPPERK------YSVWLGGSILASLSTFEDMWIT 356

Query: 309 KADYDESGPSVVHRKCF 325
           K +Y+ESG  +V RKCF
Sbjct: 357 KKEYEESGSQIVERKCF 373

ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily. Length = 373

>gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional

 Score =  216 bits (551), Expect = 1e-67
 Identities = 135/379 (35%), Positives = 176/379 (46%), Gaps = 64/379 (16%)

Query: 3   AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSS--SVDNSTLVED--------- 51
           AAVVD GS ++KAG A  D AP  V PS + R    G      +    V D         
Sbjct: 8   AAVVDNGSGMVKAGFA-GDDAPRCVFPSIVGRPKNPGIMVGMEEKDCYVGDEAQDKRGIL 66

Query: 52  VTVDPVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMF 111
               P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MF
Sbjct: 67  TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMF 125

Query: 112 ETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVG--- 168
           ET N+   Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R +V    
Sbjct: 126 ETHNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYSLPHAIHRLDVAGRD 185

Query: 169 ---------DELAYEKT------------QKSCEI-------------------EQHTLP 188
                     E     T            +K C I                   E + LP
Sbjct: 186 LTEYMMKILHERGTTFTTTAEKEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEESYELP 245

Query: 189 DGQVIRIGKERYTVGEALFQPSILGL-EAHGIVEQLVHTISTVSSENHRQLLENTVLCGG 247
           DG +I +G ER+   EALFQPS++G  E  GI E    +I+    +  + L  N VL GG
Sbjct: 246 DGTIITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGG 305

Query: 248 TTSMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQH 306
           TT   G  +R  KE   L  S ++  +V PPE        YS WIGG+IL+ +   Q   
Sbjct: 306 TTMYRGLPERLTKELTTLAPSTMKIKVVAPPERK------YSVWIGGSILSSLPTFQQMW 359

Query: 307 ITKADYDESGPSVVHRKCF 325
           +TK +YDESGPS+VHRKCF
Sbjct: 360 VTKEEYDESGPSIVHRKCF 378

Length = 378

>gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional

 Score =  204 bits (519), Expect = 5e-63
 Identities = 138/379 (36%), Positives = 187/379 (49%), Gaps = 62/379 (16%)

Query: 1   MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKR---------VLEDGSSSVDNSTLVED 51
           ++A V+D GS + KAG A  D AP  V PS + R         + +  S   D +     
Sbjct: 6   VQALVIDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRG 64

Query: 52  VTV--DPVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQL 109
           +     P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+
Sbjct: 65  ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQI 123

Query: 110 MFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG-AVQH------IAS 162
           MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG A+ H      +A 
Sbjct: 124 MFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAG 183

Query: 163 RRF-------------------------EVGDELAY---------EKTQKSCEIEQ-HTL 187
           R                           ++ ++LAY         +    S  +E+ + L
Sbjct: 184 RDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYEL 243

Query: 188 PDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGG 247
           PDGQVI IG ER+   EALFQPS LG+E+ GI E   ++I     +  + L  N VL GG
Sbjct: 244 PDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGG 303

Query: 248 TTSMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQH 306
           TT   G  DR  KE   L  S ++  ++ PPE        YS WIGG+ILA +   Q   
Sbjct: 304 TTMFPGIADRMNKELTALAPSTMKIKIIAPPERK------YSVWIGGSILASLSTFQQMW 357

Query: 307 ITKADYDESGPSVVHRKCF 325
           I+K +YDESGPS+VHRKCF
Sbjct: 358 ISKEEYDESGPSIVHRKCF 376

Length = 376

>gnl|CDD|185631 PTZ00452, PTZ00452, actin; Provisional

 Score =  157 bits (399), Expect = 2e-45
 Identities = 116/377 (30%), Positives = 165/377 (43%), Gaps = 62/377 (16%)

Query: 3   AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNST---LVEDVTV----- 54
           A V+D GS   K G A  D AP+   P+ + R  ++       +    + E+        
Sbjct: 7   AVVIDNGSGYCKIGIA-GDDAPTSCFPAIVGRSKQNDGIFSTFNKEYYVGEEAQAKRGVL 65

Query: 55  ---DPVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMF 111
              +P+  G I  WD +E + HH  Y  L     ++  +  TD   + K  RE++ Q+MF
Sbjct: 66  AIKEPIQNGIINSWDDIEIIWHHAFYNELCMSPEDQ-PVFMTDAPMNSKFNRERMTQIMF 124

Query: 112 ETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG-----AVQHI--ASRR 164
           ETFN    Y S +AVLSLY  G+  G  VD G G     PV EG     A+  I  A R 
Sbjct: 125 ETFNTPCLYISNEAVLSLYTSGKTIGLVVDSGEGVTHCVPVFEGHQIPQAITKINLAGRL 184

Query: 165 -----FEVGDELAYEKTQKSCEI------------------------------EQHTLPD 189
                 ++  EL Y  T+    I                                + LPD
Sbjct: 185 CTDYLTQILQELGYSLTEPHQRIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKLPD 244

Query: 190 GQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTT 249
           G ++ I  +++   E LFQP ++GLE  GI      +I     +  ++L  N VL GGTT
Sbjct: 245 GNILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTT 304

Query: 250 SMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHIT 308
              G  +R   E   L  S ++  +  PP+        +SAWIGG+I   +   Q Q I 
Sbjct: 305 LFPGIANRLSNELTNLVPSQLKIQVAAPPDRR------FSAWIGGSIQCTLSTQQPQWIK 358

Query: 309 KADYDESGPSVVHRKCF 325
           + +YDE GPS+VHRKCF
Sbjct: 359 RQEYDEQGPSIVHRKCF 375

Length = 375

>gnl|CDD|240426 PTZ00466, PTZ00466, actin-like protein; Provisional

 Score =  157 bits (399), Expect = 3e-45
 Identities = 111/377 (29%), Positives = 173/377 (45%), Gaps = 68/377 (18%)

Query: 5   VVDAGSKLLKAGPAIPDQAPSMVIPS-----QMKRVLEDGSSSVDNSTLVEDVTVD---- 55
           ++D G+  +KAG A  +  P++V PS     + KRV+   + +V+ +  V +   +    
Sbjct: 16  IIDNGTGYIKAGFA-GEDVPNLVFPSYVGRPKYKRVM---AGAVEGNIFVGNKAEEYRGL 71

Query: 56  -----PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLM 110
                P+  G I +W+ ME++  HV Y  +      E  +L T+   +P+  +E++ ++ 
Sbjct: 72  LKVTYPINHGIIENWNDMENIWIHV-YNSMKINS-EEHPVLLTEAPLNPQKNKEKIAEVF 129

Query: 111 FETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG-AVQHIASRR----- 164
           FETFN+   + S QA+LSLY+ G+ +G  +D G G      + EG ++ +  +R      
Sbjct: 130 FETFNVPALFISIQAILSLYSCGKTNGTVLDCGDGVCHCVSIYEGYSITNTITRTDVAGR 189

Query: 165 ----------------FEVGDELAYEKTQK--SCEIE-----------------QHTLPD 189
                           F    E+   K  K   C +                   + LPD
Sbjct: 190 DITTYLGYLLRKNGHLFNTSAEMEVVKNMKENCCYVSFNMNKEKNSSEKALTTLPYILPD 249

Query: 190 GQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTT 249
           G  I IG ERY   E LF PSILGLE  G+ E +V +I+    +  R L  + VL GGTT
Sbjct: 250 GSQILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTT 309

Query: 250 SMTGFEDRFQKEA-GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHIT 308
              GF DR   E        I   +  PPE        +S +IGG+ILA +   +   I+
Sbjct: 310 MFHGFGDRLLNEIRKFAPKDITIRISAPPERK------FSTFIGGSILASLATFKKIWIS 363

Query: 309 KADYDESGPSVVHRKCF 325
           K ++DE G  ++HRK F
Sbjct: 364 KQEFDEYGSVILHRKTF 380

Length = 380

>gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional

 Score =  117 bits (296), Expect = 4e-30
 Identities = 100/412 (24%), Positives = 161/412 (39%), Gaps = 98/412 (23%)

Query: 1   MEAAVVDAGSKLLKAGPAIPDQAPSMVIPS-------QMKRVLEDGSSSVD--------N 45
           +   V+D G+   K G A   + P+ +IP+       Q +R  + G   +D         
Sbjct: 4   LPVVVIDNGTGYTKMGYAGNTE-PTYIIPTLIADNSKQSRRRSKKGFEDLDFYIGDEALA 62

Query: 46  STLVEDVTVDPVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQ 105
           ++    +T  P+  G + DWD ME      ++  L  E      IL T+P  +P   RE 
Sbjct: 63  ASKSYTLTY-PMKHGIVEDWDLMEKFWEQCIFKYLRCEPEEHYFIL-TEPPMNPPENREY 120

Query: 106 LVQLMFETFNISGFYSSEQAVLSLYA----------VGRISGCTVDIGHGKIDIAPVIEG 155
             ++MFETFN+ G Y + QAVL+L A           G ++G  +D G G   + PV++G
Sbjct: 121 TAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVVDG 180

Query: 156 -----AVQHIA--------------------------------------------SRRFE 166
                +++HI                                             ++ FE
Sbjct: 181 YVIGSSIKHIPLAGRDITNFIQQMLRERGEPIPAEDILLLAQRIKEKYCYVAPDIAKEFE 240

Query: 167 VGDELAYEKTQKSCEIEQHTLPDGQ--VIRIGKERYTVGEALFQPSILGLEAHGIVEQLV 224
             D       +K   +   T    +   + +G ER+   E  F P I   E    + ++V
Sbjct: 241 KYDSDPKNHFKKYTAVNSVT---KKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVV 297

Query: 225 -HTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKE------------AGLCSSAIRP 271
              I +   +  R L +N VL GG+T   GF+ R Q++              L    ++P
Sbjct: 298 DDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVRKRVDRRLKKAEELSGGKLKP 357

Query: 272 TLVKPPEYMPENLTLYSAWIGGAILA-KVVFPQNQHITKADYDESGPSVVHR 322
             +     +      Y+ W GG++LA    F +  H TKA+YDE GPS+   
Sbjct: 358 IPID-VNVVSHPRQRYAVWYGGSMLASSPEFEKVCH-TKAEYDEYGPSICRY 407

Length = 414

>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton]

 Score =  113 bits (285), Expect = 2e-28
 Identities = 74/298 (24%), Positives = 115/298 (38%), Gaps = 46/298 (15%)

Query: 3   AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKR---------VLEDGSSSVDNSTLVED-- 51
             V+D GS   KAG A  +  P+ V PS + R           E+  + V N    +   
Sbjct: 8   TIVIDNGSGTTKAGFA-GNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRDN 66

Query: 52  ---VTVDPVVRGFIRDWDAMEDLLHHVLYAGLGWE-EGNEGQILFTDPLCSPKAVREQLV 107
                  P+  G I +WDAME +  +  +          E  +L T+P  +P + RE++ 
Sbjct: 67  SLLELRYPIENGIILNWDAMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKIT 126

Query: 108 QLMFETFNISGFYSSEQAVLSLYAVGRI--SGCTVDIGHGKIDIAPVIEGAVQHIASRRF 165
           +L+FET N+   Y + QAVLSLYA G    +G  +D G     + PV++G V   A +R 
Sbjct: 127 ELLFETLNVPALYLAIQAVLSLYASGSSDETGLVIDSGDSVTHVIPVVDGIVLPKAVKRI 186

Query: 166 EVGD---------------------ELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGE 204
           ++G                       L  E  + S EI    + +       +  Y    
Sbjct: 187 DIGGRDITDYLKKLLREKYPPSRGYNLKSELVEYSSEIVN-EIKEEVCETDDESAYV--- 242

Query: 205 ALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTV-LCGGTTSMTGFEDRFQKE 261
           +L        E     E+   T ST        + + +  L  G     G E+RF+  
Sbjct: 243 SLDAEEEFEEEEEKPAEKS--TESTFQLSKETSIAKESKELPDGEEIEFGNEERFKAP 298

Length = 444

>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton]

 Score = 94.0 bits (234), Expect = 2e-21
 Identities = 69/281 (24%), Positives = 103/281 (36%), Gaps = 51/281 (18%)

Query: 86  NEGQILFTD----PLCSPKAVREQLVQLMFETFNISGFY-SSEQAVLSLYAVGRISG--C 138
            +G +L        +            L  +     G+   SE    S   V  I    C
Sbjct: 174 VDGIVLPKAVKRIDIGGRDITDYLKKLLREKYPPSRGYNLKSELVEYSSEIVNEIKEEVC 233

Query: 139 TVDIGHG--KIDIAPVIEGAVQHIASRRFEVGDELAYEKTQKSCEIEQHTLPDGQVIRIG 196
             D       +D     E   +  A +  E   +L+ E +      E   LPDG+ I  G
Sbjct: 234 ETDDESAYVSLDAEEEFEEEEEKPAEKSTESTFQLSKETSIAKESKE---LPDGEEIEFG 290

Query: 197 KE-RYTVGEALFQPS--ILGLEA---------------------------HGIVEQLVHT 226
            E R+   E LF+P   I GLE                             G+ E +  +
Sbjct: 291 NEERFKAPEILFKPELPISGLEEAGKIDESKQELVAENYEISPTNLGNDIAGLPELVYQS 350

Query: 227 ISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTL 286
           I     +  + L  N VL GGT+ + GF +R QKE     +++ P++ K     P +   
Sbjct: 351 IQICDEDVRKSLYSNIVLTGGTSKIPGFAERLQKEL----TSLAPSIWKVSVIPPPD-PS 405

Query: 287 YSAWIGGAILAKVVFPQNQH--ITKADYDESGPSVVHRKCF 325
             AW+G +ILA       Q   ITK +Y+E GP ++  K F
Sbjct: 406 LDAWLGASILAS--LETFQQLWITKEEYEEHGPDILQEKRF 444

Length = 444

>gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily

 Score = 68.8 bits (168), Expect = 6e-14
 Identities = 35/160 (21%), Positives = 58/160 (36%), Gaps = 22/160 (13%)

Query: 35  VLEDGSSSV------DNSTLVEDVTVDPVV--RGFIRDWDAMEDLLHHVLYAGLGWEEGN 86
            ++ GS+S        +  ++ +  V   V   G + D D +E+ L  +L   L   +  
Sbjct: 2   GIDIGSTSTKAGVADLDGEILPEEIVPTPVGRPGAVTDLDELEEALRELLKEALRQLKSE 61

Query: 87  EGQILFTDPLCSPKAVREQL---------VQLMFETFNISGFYSSEQAVLSLYAVGRI-- 135
              +  T+P   PK  RE +         + L  E            AV +  A G    
Sbjct: 62  IDAVGITEPGGVPKENREVIILPNLLLIPLALALEDLGGVPVAVVNDAVAAALAEGLFGK 121

Query: 136 ---SGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGDELA 172
              +   VD+G G   IA V +G     A+    + + LA
Sbjct: 122 EEDTVLVVDLGTGTTGIAIVEDGKGGVGAAGELGIAEALA 161

This superfamily includes the actin family, the HSP70 family of molecular chaperones and nucleotide exchange factors, the ROK (repressor, ORF, kinase) family, the hexokinase family, the FGGY family (which includes glycerol kinase and similar carbohydrate kinases such as rhamnulokinase and xylulokinase), the exopolyphosphatase/guanosine pentaphosphate phosphohydrolase/nucleoside triphosphate diphosphohydrolase family, propionate kinase/acetate kinase family, glycerol dehydratase reactivase, 2-hydroxyglutaryl-CoA dehydratase component A, N-acetylglucosamine kinase, butyrate kinase 2, Escherichia coli YeaZ and similar glycoproteases, the cell shape-determining protein MreB, the plasmid DNA segregation factor ParM, cell cycle proteins FtsA, Pili assembly protein PilM, ethanolamine utilization protein EutJ, and similar proteins. The nucleotide-binding site residues are conserved; the nucleotide sits in a deep cleft formed between the two lobes of the nucleotide-binding domain (NBD). Substrate binding to superfamily members is associated with closure of this catalytic site cleft. The functional activities of several members of the superfamily, including hexokinases, actin, and HSP70s, are modulated by allosteric effectors, which may act on the cleft closure. Length = 185

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	325
PTZ00452	375	actin; Provisional	100.0
PTZ00466	380	actin-like protein; Provisional	100.0
KOG0676	372	consensus Actin and related proteins [Cytoskeleton	100.0
PTZ00281	376	actin; Provisional	100.0
PTZ00004	378	actin-2; Provisional	100.0
KOG0679	426	consensus Actin-related protein - Arp4p/Act3p [Cyt	100.0
PTZ00280	414	Actin-related protein 3; Provisional	100.0
PF00022	393	Actin: Actin; InterPro: IPR004000 Actin [, ] is a	100.0
smart00268	373	ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki	100.0
KOG0677	389	consensus Actin-related protein Arp2/3 complex, su	100.0
cd00012	371	ACTIN Actin; An ubiquitous protein involved in the	100.0
COG5277	444	Actin and related proteins [Cytoskeleton]	100.0
KOG0680	400	consensus Actin-related protein - Arp6p [Cytoskele	100.0
KOG0678	415	consensus Actin-related protein Arp2/3 complex, su	100.0
KOG0681	645	consensus Actin-related protein - Arp5p [Cytoskele	100.0
KOG0797	618	consensus Actin-related protein [Cytoskeleton]	100.0
PRK13930	335	rod shape-determining protein MreB; Provisional	99.97
PRK13927	334	rod shape-determining protein MreB; Provisional	99.97
TIGR00904	333	mreB cell shape determining protein, MreB/Mrl fami	99.96
PRK13929	335	rod-share determining protein MreBH; Provisional	99.95
PF06723	326	MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba	99.94
PRK13928	336	rod shape-determining protein Mbl; Provisional	99.92
COG1077	342	MreB Actin-like ATPase involved in cell morphogene	99.85
TIGR02529	239	EutJ ethanolamine utilization protein EutJ family	99.65
PRK15080	267	ethanolamine utilization protein EutJ; Provisional	99.55
CHL00094	621	dnaK heat shock protein 70	99.19
PRK00290	627	dnaK molecular chaperone DnaK; Provisional	99.19
PTZ00186	657	heat shock 70 kDa precursor protein; Provisional	99.15
TIGR01991	599	HscA Fe-S protein assembly chaperone HscA. The Hea	99.15
PTZ00400	663	DnaK-type molecular chaperone; Provisional	99.14
TIGR02350	595	prok_dnaK chaperone protein DnaK. Members of this	99.13
PRK05183	616	hscA chaperone protein HscA; Provisional	99.11
PRK01433	595	hscA chaperone protein HscA; Provisional	99.1
PLN03184	673	chloroplast Hsp70; Provisional	99.1
PRK13411	653	molecular chaperone DnaK; Provisional	99.09
PRK13410	668	molecular chaperone DnaK; Provisional	99.07
PTZ00009	653	heat shock 70 kDa protein; Provisional	99.05
COG4820	277	EutJ Ethanolamine utilization protein, possible ch	98.99
TIGR01174	371	ftsA cell division protein FtsA. This bacterial ce	98.79
PF00012	602	HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho	98.78
PRK11678	450	putative chaperone; Provisional	98.69
PRK09472	420	ftsA cell division protein FtsA; Reviewed	98.65
PRK13917	344	plasmid segregation protein ParM; Provisional	98.64
COG0443	579	DnaK Molecular chaperone [Posttranslational modifi	98.36
PF11104	340	PilM_2: Type IV pilus assembly protein PilM;; PDB:	98.36
TIGR03739	320	PRTRC_D PRTRC system protein D. A novel genetic sy	98.34
TIGR01175	348	pilM type IV pilus assembly protein PilM. This pro	98.23
COG0849	418	ftsA Cell division ATPase FtsA [Cell division and	97.79
COG4972	354	PilM Tfp pilus assembly protein, ATPase PilM [Cell	97.58
KOG0104	902	consensus Molecular chaperones GRP170/SIL1, HSP70	97.22
TIGR00241	248	CoA_E_activ CoA-substrate-specific enzyme activase	97.14
COG1924	396	Activator of 2-hydroxyglutaryl-CoA dehydratase (HS	97.12
TIGR03286	404	methan_mark_15 putative methanogenesis marker prot	96.89
TIGR03192	293	benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s	96.79
PRK10719	475	eutA reactivating factor for ethanolamine ammonia	96.77
PF06406	318	StbA: StbA protein; InterPro: IPR009440 This entry	96.02
KOG0103	727	consensus Molecular chaperones HSP105/HSP110/SSE1,	95.92
COG0248	492	GppA Exopolyphosphatase [Nucleotide transport and	95.68
PRK10854	513	exopolyphosphatase; Provisional	95.62
PRK11031	496	guanosine pentaphosphate phosphohydrolase; Provisi	95.58
KOG0100	663	consensus Molecular chaperones GRP78/BiP/KAR2, HSP	95.52
TIGR02261	262	benz_CoA_red_D benzoyl-CoA reductase, bcr type, su	95.52
COG1548	330	Predicted transcriptional regulator/sugar kinase [	95.45
KOG0101	620	consensus Molecular chaperones HSP70/HSC70, HSP70	95.22
TIGR03706	300	exo_poly_only exopolyphosphatase. It appears that	94.49
TIGR00671	243	baf pantothenate kinase, type III. This model desc	93.51
PRK13321	256	pantothenate kinase; Reviewed	93.35
TIGR03123	318	one_C_unchar_1 probable H4MPT-linked C1 transfer p	93.26
TIGR02259	432	benz_CoA_red_A benzoyl-CoA reductase, bcr type, su	92.75
PF01869	271	BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; In	92.09
PF06277	473	EutA: Ethanolamine utilisation protein EutA; Inter	91.69
PRK13318	258	pantothenate kinase; Reviewed	91.55
PRK13326	262	pantothenate kinase; Reviewed	90.62
PF01968	290	Hydantoinase_A: Hydantoinase/oxoprolinase; InterPr	90.3
COG1521	251	Pantothenate kinase type III (Bvg accessory factor	89.89
KOG1794	336	consensus N-Acetylglucosamine kinase [Carbohydrate	88.61
PRK13317	277	pantothenate kinase; Provisional	86.5
PRK13324	258	pantothenate kinase; Reviewed	86.47
PF07318	343	DUF1464: Protein of unknown function (DUF1464); In	86.33
PRK13320	244	pantothenate kinase; Reviewed	86.27
PF03309	206	Pan_kinase: Type III pantothenate kinase; InterPro	82.2

>PTZ00452 actin; Provisional

Probab=100.00  E-value=2.8e-78  Score=564.29  Aligned_cols=315  Identities=35%  Similarity=0.621  Sum_probs=287.9

Q ss_pred             ceEEEEcCCCcEEEeeeCCCCCCcEecccceeecCC----------CcccccCcccccc-Ccee-ccccCCeecCHHHHH
Q 020526            2 EAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLE----------DGSSSVDNSTLVE-DVTV-DPVVRGFIRDWDAME   69 (325)
Q Consensus         2 ~~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~~----------~~~~g~~~~~~~~-~~~~-~p~~~g~i~d~~~~~   69 (325)
                      ++||||+||+++|+||| ||+.|+.++||.+++...          +.++| +++...+ .+++ +|+++|.|.|||.+|
T Consensus         6 ~~vViD~Gs~~~k~G~a-ge~~P~~i~ps~vg~~~~~~~~~~~~~~~~~iG-~~~~~~~~~~~l~~Pi~~G~I~dwd~~e   83 (375)
T PTZ00452          6 PAVVIDNGSGYCKIGIA-GDDAPTSCFPAIVGRSKQNDGIFSTFNKEYYVG-EEAQAKRGVLAIKEPIQNGIINSWDDIE   83 (375)
T ss_pred             CEEEEECCCCeEEEeeC-CCCCcCEEecceeEEECCccccccccccceEEC-hhhhccccCcEEcccCcCCEEcCHHHHH
Confidence            47999999999999999 999999999999976422          24678 7764443 4554 999999999999999


Q ss_pred             HHHHHHHHhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCCceEEEEEcCCCceEE
Q 020526           70 DLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDI  149 (325)
Q Consensus        70 ~il~~~~~~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVdiG~~~t~v  149 (325)
                      .+|+|+|.+.|+++| .++|++++|++++++..|++++|++||+|++|++++.++++|++|++|++||+|||+|++.|+|
T Consensus        84 ~iw~~~f~~~l~v~p-~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~~tglVVDiG~~~t~v  162 (375)
T PTZ00452         84 IIWHHAFYNELCMSP-EDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGKTIGLVVDSGEGVTHC  162 (375)
T ss_pred             HHHHHHHHhhcCCCc-ccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCCceeeeecCCCCcceE
Confidence            999999999999999 9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeecCeeccccceeecCcc--------------------------------hhchh-----hhcc-----cCCcceEEC
Q 020526          150 APVIEGAVQHIASRRFEVGD--------------------------------ELAYE-----KTQK-----SCEIEQHTL  187 (325)
Q Consensus       150 ~pv~~G~~i~~~~~~~~~ge--------------------------------~~~~~-----~~~~-----~~~~~~~~l  187 (325)
                      +||+||+++.+++.++++|.                                +.+|.     ++..     ....+.|+|
T Consensus       163 ~PV~dG~~l~~~~~r~~~gG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~L  242 (375)
T PTZ00452        163 VPVFEGHQIPQAITKINLAGRLCTDYLTQILQELGYSLTEPHQRIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKL  242 (375)
T ss_pred             EEEECCEEeccceEEeeccchHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEEC
Confidence            99999999999999999991                                12221     1110     112368999


Q ss_pred             CCCcEEEecceeeccccccccCCCCCCcCCcHHHHHHHHHHhCChHHHHhccccEEEecCCCCccchHHHHHHhh-ccCC
Q 020526          188 PDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCS  266 (325)
Q Consensus       188 pd~~~i~l~~e~~~~~E~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL-~~~~  266 (325)
                      |||+.+.++.||+.++|+||+|++++.+..||+++|.++|++||+|+|+.|++||+|+||+|++|||.+||++|| +++|
T Consensus       243 PDg~~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p  322 (375)
T PTZ00452        243 PDGNILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVP  322 (375)
T ss_pred             CCCCEEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             CCcceEEeCCCCCCCCCCCceeeeehhhhhhccCCCCCeeeeHHHHhhcCcchhhcccC
Q 020526          267 SAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF  325 (325)
Q Consensus       267 ~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~l~~~~~~~itk~ey~e~G~~~~~~k~~  325 (325)
                      .+.+++|..+++      |++++|+|||++|++++|+++||||+||+|+|+++++||||
T Consensus       323 ~~~~v~v~~~~~------r~~~aW~GgSilasl~~f~~~~vtk~eYeE~G~~i~~~k~~  375 (375)
T PTZ00452        323 SQLKIQVAAPPD------RRFSAWIGGSIQCTLSTQQPQWIKRQEYDEQGPSIVHRKCF  375 (375)
T ss_pred             CCceeEEecCCC------cceeEEECchhhcCccchhhhEeEHHHHhccCcceeeeecC
Confidence            888999999888      99999999999999999999999999999999999999997

>PTZ00466 actin-like protein; Provisional

Probab=100.00  E-value=5.1e-77  Score=556.32  Aligned_cols=315  Identities=33%  Similarity=0.575  Sum_probs=286.7

Q ss_pred             CceEEEEcCCCcEEEeeeCCCCCCcEecccceeecC----------CCcccccCcccccc-Ccee-ccccCCeecCHHHH
Q 020526            1 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVL----------EDGSSSVDNSTLVE-DVTV-DPVVRGFIRDWDAM   68 (325)
Q Consensus         1 m~~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~----------~~~~~g~~~~~~~~-~~~~-~p~~~g~i~d~~~~   68 (325)
                      +++||||+||+++|+||| ||+.|+.++||.+++..          ++.++| +++...+ .+++ +|+++|.|.|||.+
T Consensus        12 ~~~iViD~GS~~~K~G~a-g~~~P~~~~ps~vg~~k~~~~~~~~~~~~~~vG-~~~~~~~~~~~l~~Pi~~G~v~dwd~~   89 (380)
T PTZ00466         12 NQPIIIDNGTGYIKAGFA-GEDVPNLVFPSYVGRPKYKRVMAGAVEGNIFVG-NKAEEYRGLLKVTYPINHGIIENWNDM   89 (380)
T ss_pred             CCeEEEECCCCcEEEeeC-CCCCCCEeccceeeeecCccccccCCCCCeEEC-chhhhhCcCceeCccccCCeECCHHHH
Confidence            468999999999999999 99999999999987632          234678 7765444 3444 89999999999999


Q ss_pred             HHHHHHHHHhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCCceEEEEEcCCCceE
Q 020526           69 EDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKID  148 (325)
Q Consensus        69 ~~il~~~~~~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVdiG~~~t~  148 (325)
                      |.+|+|+| +.|++++ .++|+++++++++++..|++++|++||+|++|++++.++++||+|++|++||+|||+|++.|+
T Consensus        90 e~iw~~~f-~~l~v~~-~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~~tglVVD~G~~~t~  167 (380)
T PTZ00466         90 ENIWIHVY-NSMKINS-EEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGKTNGTVLDCGDGVCH  167 (380)
T ss_pred             HHHHHHHH-hhcccCC-ccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCCceEEEEeCCCCceE
Confidence            99999998 6799999 999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeecCeeccccceeecCcch--------------------------------hch-----hhhcc----cCCcceEEC
Q 020526          149 IAPVIEGAVQHIASRRFEVGDE--------------------------------LAY-----EKTQK----SCEIEQHTL  187 (325)
Q Consensus       149 v~pv~~G~~i~~~~~~~~~ge~--------------------------------~~~-----~~~~~----~~~~~~~~l  187 (325)
                      |+||+||+++.+++.++++|.+                                .+|     .++..    ......|+|
T Consensus       168 v~PV~~G~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~~~y~L  247 (380)
T PTZ00466        168 CVSIYEGYSITNTITRTDVAGRDITTYLGYLLRKNGHLFNTSAEMEVVKNMKENCCYVSFNMNKEKNSSEKALTTLPYIL  247 (380)
T ss_pred             EEEEECCEEeecceeEecCchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhCeEecCChHHHHhhccccccceeEEC
Confidence            9999999999999999999911                                122     11111    112368999


Q ss_pred             CCCcEEEecceeeccccccccCCCCCCcCCcHHHHHHHHHHhCChHHHHhccccEEEecCCCCccchHHHHHHhh-ccCC
Q 020526          188 PDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCS  266 (325)
Q Consensus       188 pd~~~i~l~~e~~~~~E~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL-~~~~  266 (325)
                      |||+.+.++.|||.+||+||+|++++.+..+|+++|.++|.+||+|.|+.|++||+|+||+|++|||.+||++|| ++.|
T Consensus       248 Pdg~~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p  327 (380)
T PTZ00466        248 PDGSQILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAP  327 (380)
T ss_pred             CCCcEEEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             CCcceEEeCCCCCCCCCCCceeeeehhhhhhccCCCCCeeeeHHHHhhcCcchhhcccC
Q 020526          267 SAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF  325 (325)
Q Consensus       267 ~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~l~~~~~~~itk~ey~e~G~~~~~~k~~  325 (325)
                      .+.++++..+++      |.+++|+|||++|++++|++.||||+||+|+|+++++||||
T Consensus       328 ~~~~v~v~~~~~------r~~~aW~GgSilasl~~f~~~~itk~eYeE~G~~iv~rk~~  380 (380)
T PTZ00466        328 KDITIRISAPPE------RKFSTFIGGSILASLATFKKIWISKQEFDEYGSVILHRKTF  380 (380)
T ss_pred             CCceEEEecCCC------CceeEEECchhhcCccchhhhEeEHHHHhhhCcHhheeecC
Confidence            888999998888      99999999999999999999999999999999999999997

>KOG0676 consensus Actin and related proteins [Cytoskeleton]

Probab=100.00  E-value=3.3e-78  Score=547.63  Aligned_cols=312  Identities=44%  Similarity=0.735  Sum_probs=287.8

Q ss_pred             ceEEEEcCCCcEEEeeeCCCCCCcEecccceeec----------CCCcccccCccccccCceeccccCCeecCHHHHHHH
Q 020526            2 EAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRV----------LEDGSSSVDNSTLVEDVTVDPVVRGFIRDWDAMEDL   71 (325)
Q Consensus         2 ~~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~----------~~~~~~g~~~~~~~~~~~~~p~~~g~i~d~~~~~~i   71 (325)
                      ++||+|+||..+|+||| ||+.|+.++||.+++.          .++.++| +++..++.+ +||+++|.|.|||+++.|
T Consensus         8 ~~vViDnGsg~~KaGfa-g~~~P~~v~ps~vg~~~~~~~~~~~~~~~~~vg-~~a~~~~~l-~~Pie~Giv~~wd~me~i   84 (372)
T KOG0676|consen    8 QAVVIDNGSGFVKAGFA-GDDAPRAVFPSIVGRPRHQGVMAGMTQKDTYVG-DEAESKRTL-KYPIERGIVTDWDDMEKI   84 (372)
T ss_pred             ceEEEECCCceeecccC-CCCCCceecceeccccccccccccccccccccc-hhhhccccc-cCccccccccchHHHHHH
Confidence            68999999999999999 9999999999999762          2356788 888777622 599999999999999999


Q ss_pred             HHHHHHhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCCceEEEEEcCCCceEEEE
Q 020526           72 LHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAP  151 (325)
Q Consensus        72 l~~~~~~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVdiG~~~t~v~p  151 (325)
                      |+|+|.+.|+++| .+||++++|++++++..||+++|++||.||+|++++..++++  |++|++||+|||+|++.|+++|
T Consensus        85 w~~if~~~L~~~P-ee~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yva~qavl--ya~g~ttG~VvD~G~gvt~~vP  161 (372)
T KOG0676|consen   85 WHHLFYSELLVAP-EEHPVLLTEPPLNPKANREKLTQIMFETFNVPALYVAIQAVL--YASGRTTGLVVDSGDGVTHVVP  161 (372)
T ss_pred             HHHHHHHhhccCc-ccCceEeecCCCCchHhHHHHHHHhhhhcCccHhHHHHHHHH--HHcCCeeEEEEEcCCCceeeee
Confidence            9999999999999 999999999999999999999999999999999999776666  9999999999999999999999


Q ss_pred             eecCeeccccceeecCc--------------------------------chhch-----hhhccc-----CCcceEECCC
Q 020526          152 VIEGAVQHIASRRFEVG--------------------------------DELAY-----EKTQKS-----CEIEQHTLPD  189 (325)
Q Consensus       152 v~~G~~i~~~~~~~~~g--------------------------------e~~~~-----~~~~~~-----~~~~~~~lpd  189 (325)
                      |++|+++++++.++++|                                |++||     +++...     .....|++||
T Consensus       162 I~eG~~lp~ai~~ldl~G~dlt~~l~~~L~~~g~s~~~~~~~eIv~diKeklCyvald~~~e~~~~~~~~~l~~~y~lPD  241 (372)
T KOG0676|consen  162 IYEGYALPHAILRLDLAGRDLTDYLLKQLRKRGYSFTTSAEFEIVRDIKEKLCYVALDFEEEEETANTSSSLESSYELPD  241 (372)
T ss_pred             cccccccchhhheecccchhhHHHHHHHHHhcccccccccHHHHHHHhHhhhcccccccchhhhcccccccccccccCCC
Confidence            99999999999999999                                22344     223221     1236699999


Q ss_pred             CcEEEecceeeccccccccCCCCCCcCCcHHHHHHHHHHhCChHHHHhccccEEEecCCCCccchHHHHHHhh-ccCCCC
Q 020526          190 GQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCSSA  268 (325)
Q Consensus       190 ~~~i~l~~e~~~~~E~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL-~~~~~~  268 (325)
                      |+.+.+++|||.+||+||+|+.+|.+..+|++++.++|.+||+|+|++||+||+|+||++++|||.+||++|| .+.|+.
T Consensus       242 g~~i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl~kEl~~l~P~~  321 (372)
T KOG0676|consen  242 GQKITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENIVLSGGTTMFPGLADRLQKELQALAPST  321 (372)
T ss_pred             CCEEecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhheEEeCCcccchhHHHHHHHHHhhcCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999 999999


Q ss_pred             cceEEeCCCCCCCCCCCceeeeehhhhhhccCCCCCeeeeHHHHhhcCcchhhcccC
Q 020526          269 IRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF  325 (325)
Q Consensus       269 ~~v~v~~~~~~~~~~~~~~~~W~G~si~a~l~~~~~~~itk~ey~e~G~~~~~~k~~  325 (325)
                      .+++++.+|+      +.+++|+||||+|++++|+++||||+||+|+|+++++||||
T Consensus       322 ~~ikv~~pp~------r~~s~WlGgSIlaslstfq~~witk~eY~e~g~~~~~rk~f  372 (372)
T KOG0676|consen  322 IKIKVIAPPE------RKYSAWLGGSILASLSTFQQMWITKEEYEEHGPSIIHRKCF  372 (372)
T ss_pred             cceEEecCcc------cccceecCceeEeecchHhhccccHHHHhhhCCceeeeccC
Confidence            9999999999      78999999999999999999999999999999999999998

>PTZ00281 actin; Provisional

Probab=100.00  E-value=1.9e-76  Score=553.20  Aligned_cols=316  Identities=43%  Similarity=0.692  Sum_probs=287.7

Q ss_pred             CceEEEEcCCCcEEEeeeCCCCCCcEecccceeecC----------CCcccccCcccccc-Cce-eccccCCeecCHHHH
Q 020526            1 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVL----------EDGSSSVDNSTLVE-DVT-VDPVVRGFIRDWDAM   68 (325)
Q Consensus         1 m~~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~----------~~~~~g~~~~~~~~-~~~-~~p~~~g~i~d~~~~   68 (325)
                      +++||||+||+++|+||| ||+.|+.++||.+++..          .+.++| +++...+ .++ ++|+++|.|.|||.+
T Consensus         6 ~~~vViD~Gs~~~k~G~a-ge~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~l~~Pi~~G~i~dwd~~   83 (376)
T PTZ00281          6 VQALVIDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVG-DEAQSKRGILTLKYPIEHGIVTNWDDM   83 (376)
T ss_pred             CCeEEEECCCCeEEEeeC-CCCCCCeeccccceeecCcccccCcccCCeEEC-chhhccccCcEEeccCcCCEEcCHHHH
Confidence            468999999999999999 99999999999987531          134678 7765433 455 499999999999999


Q ss_pred             HHHHHHHHHhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCCceEEEEEcCCCceE
Q 020526           69 EDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKID  148 (325)
Q Consensus        69 ~~il~~~~~~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVdiG~~~t~  148 (325)
                      +.+|+|+|.+.|.++| +++|+++++|+++++..|++++|++||.|++|+++++++++|++|++|++||+|||+|++.|+
T Consensus        84 e~l~~~~f~~~l~v~p-~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~~tglVVDiG~~~t~  162 (376)
T PTZ00281         84 EKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSH  162 (376)
T ss_pred             HHHHHHHHHhhccCCC-ccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCCceEEEEECCCceEE
Confidence            9999999988899999 999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeecCeeccccceeecCcch--------------------------------hchh-----hhcc-----cCCcceEE
Q 020526          149 IAPVIEGAVQHIASRRFEVGDE--------------------------------LAYE-----KTQK-----SCEIEQHT  186 (325)
Q Consensus       149 v~pv~~G~~i~~~~~~~~~ge~--------------------------------~~~~-----~~~~-----~~~~~~~~  186 (325)
                      |+||+||+++.++++++++|.+                                .+|.     .+..     ....+.|.
T Consensus       163 v~PV~dG~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~y~  242 (376)
T PTZ00281        163 TVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYE  242 (376)
T ss_pred             EEEEEecccchhheeeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcEEecCCchHHHHhhhcCcccceeEE
Confidence            9999999999999999999911                                1221     1111     11236899


Q ss_pred             CCCCcEEEecceeeccccccccCCCCCCcCCcHHHHHHHHHHhCChHHHHhccccEEEecCCCCccchHHHHHHhh-ccC
Q 020526          187 LPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLC  265 (325)
Q Consensus       187 lpd~~~i~l~~e~~~~~E~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL-~~~  265 (325)
                      ||||+.+.++.||+.++|+||+|+..+.+..+|+++|.++|.+||+|+|+.|++||||+||+|++|||.+||++|| ++.
T Consensus       243 LPdg~~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~  322 (376)
T PTZ00281        243 LPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALA  322 (376)
T ss_pred             CCCCCEEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             CCCcceEEeCCCCCCCCCCCceeeeehhhhhhccCCCCCeeeeHHHHhhcCcchhhcccC
Q 020526          266 SSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF  325 (325)
Q Consensus       266 ~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~l~~~~~~~itk~ey~e~G~~~~~~k~~  325 (325)
                      |...++++..+++      |.+++|+|||++|++++|++.||||+||+|+|+++++||||
T Consensus       323 p~~~~v~v~~~~~------r~~~aW~Ggsilasl~~f~~~~vtk~eY~E~G~~~~~~k~~  376 (376)
T PTZ00281        323 PSTMKIKIIAPPE------RKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF  376 (376)
T ss_pred             CCCcceEEecCCC------CceeEEECcccccCcccHhhceeeHHHHhhhCchheeeecC
Confidence            9888999999888      89999999999999999999999999999999999999997

>PTZ00004 actin-2; Provisional

Probab=100.00  E-value=2.8e-74  Score=539.20  Aligned_cols=315  Identities=42%  Similarity=0.682  Sum_probs=286.3

Q ss_pred             ceEEEEcCCCcEEEeeeCCCCCCcEecccceeecCC----------CcccccCcccccc-Ccee-ccccCCeecCHHHHH
Q 020526            2 EAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLE----------DGSSSVDNSTLVE-DVTV-DPVVRGFIRDWDAME   69 (325)
Q Consensus         2 ~~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~~----------~~~~g~~~~~~~~-~~~~-~p~~~g~i~d~~~~~   69 (325)
                      ++||||+||+++|+||| |++.|+.++||.+++...          +.++| +++...+ .+++ +|+++|.|.|||.++
T Consensus         7 ~~vViD~Gs~~~k~G~a-g~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~l~~Pi~~G~i~d~d~~e   84 (378)
T PTZ00004          7 NAAVVDNGSGMVKAGFA-GDDAPRCVFPSIVGRPKNPGIMVGMEEKDCYVG-DEAQDKRGILTLKYPIEHGIVTNWDDME   84 (378)
T ss_pred             CeEEEECCCCeEEEeeC-CCCCCCEEccceeEEecccccccCcCCCceEEC-chhhcccccceEcccCcCCEEcCHHHHH
Confidence            57999999999999999 999999999999876422          34678 7664443 3454 999999999999999


Q ss_pred             HHHHHHHHhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCCceEEEEEcCCCceEE
Q 020526           70 DLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDI  149 (325)
Q Consensus        70 ~il~~~~~~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVdiG~~~t~v  149 (325)
                      .+|+|+|.+.|++++ .++|+++++++++++..|+++++++||.|++|++++.+++++|+|++|++||+|||+|++.|+|
T Consensus        85 ~i~~~~~~~~l~v~~-~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~~tglVVDiG~~~t~v  163 (378)
T PTZ00004         85 KIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHT  163 (378)
T ss_pred             HHHHHHHHhhcccCC-ccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCCceEEEEECCCCcEEE
Confidence            999999988899999 9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeecCeeccccceeecCcch--------------------------------hch-----hhhccc----C--CcceEE
Q 020526          150 APVIEGAVQHIASRRFEVGDE--------------------------------LAY-----EKTQKS----C--EIEQHT  186 (325)
Q Consensus       150 ~pv~~G~~i~~~~~~~~~ge~--------------------------------~~~-----~~~~~~----~--~~~~~~  186 (325)
                      +||+||+++.+++.++++|.+                                .+|     .++...    .  ....|.
T Consensus       164 ~pV~dG~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~~y~  243 (378)
T PTZ00004        164 VPIYEGYSLPHAIHRLDVAGRDLTEYMMKILHERGTTFTTTAEKEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEESYE  243 (378)
T ss_pred             EEEECCEEeecceeeecccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhhcceeecCCHHHHHhhhhcCccccceEEE
Confidence            999999999999999999911                                122     111111    1  136799


Q ss_pred             CCCCcEEEecceeeccccccccCCCCCCc-CCcHHHHHHHHHHhCChHHHHhccccEEEecCCCCccchHHHHHHhh-cc
Q 020526          187 LPDGQVIRIGKERYTVGEALFQPSILGLE-AHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GL  264 (325)
Q Consensus       187 lpd~~~i~l~~e~~~~~E~lF~p~~~~~~-~~~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL-~~  264 (325)
                      ||||+.+.++.||+.+||+||+|+.++.+ ..+|+++|.++|.+||+|+|+.|++||+|+||+|++|||.+||++|| ++
T Consensus       244 lPdg~~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~  323 (378)
T PTZ00004        244 LPDGTIITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTL  323 (378)
T ss_pred             CCCCCEEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHh
Confidence            99999999999999999999999988888 89999999999999999999999999999999999999999999999 99


Q ss_pred             CCCCcceEEeCCCCCCCCCCCceeeeehhhhhhccCCCCCeeeeHHHHhhcCcchhhcccC
Q 020526          265 CSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF  325 (325)
Q Consensus       265 ~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~l~~~~~~~itk~ey~e~G~~~~~~k~~  325 (325)
                      .|...+++|..+++      |.+++|+|||++|++++|++.||||+||+|+|+++++||||
T Consensus       324 ~p~~~~~~v~~~~~------~~~~aW~Ggsilas~~~f~~~~vtk~eYeE~G~~~~~rk~~  378 (378)
T PTZ00004        324 APSTMKIKVVAPPE------RKYSVWIGGSILSSLPTFQQMWVTKEEYDESGPSIVHRKCF  378 (378)
T ss_pred             CCCCccEEEecCCC------CceeEEECcccccCccchhhhEeEHHHHhhhCcceEEeecC
Confidence            99888999998887      99999999999999999999999999999999999999997

>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]

Probab=100.00  E-value=6.5e-74  Score=506.14  Aligned_cols=317  Identities=29%  Similarity=0.514  Sum_probs=280.8

Q ss_pred             ceEEEEcCCCcEEEeeeCCCCCCcEecccceeec---------CCCcccccCccc-ccc-Ccee-ccccCCeecCHHHHH
Q 020526            2 EAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRV---------LEDGSSSVDNST-LVE-DVTV-DPVVRGFIRDWDAME   69 (325)
Q Consensus         2 ~~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~---------~~~~~~g~~~~~-~~~-~~~~-~p~~~g~i~d~~~~~   69 (325)
                      ++||||+||+++|+||| |++.|++++||+++..         .+..+++ .++. ..+ ++++ .|+++|.+.|||.++
T Consensus        12 ~alViDpGS~~traGya-ged~Pk~ilPS~~G~~tk~~~d~~~~~~~y~~-~~ai~~pr~gmEv~~~i~nGlv~dWD~~~   89 (426)
T KOG0679|consen   12 SALVIDPGSHTTRAGYA-GEDSPKAILPSVYGKVTKTDGDAEDKKGYYVD-ENAIHVPRPGMEVKTPIKNGLVEDWDLFE   89 (426)
T ss_pred             ceEEEeCCCceEecccc-CCCCccccccceeeeeecccCccccccceEee-chhccCCCCCCeeccchhcCCcccHHHHH
Confidence            58999999999999999 9999999999999841         1113555 4442 233 7775 899999999999999


Q ss_pred             HHHHHHHHhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCCceEEEEEcCCCceEE
Q 020526           70 DLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDI  149 (325)
Q Consensus        70 ~il~~~~~~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVdiG~~~t~v  149 (325)
                      .+|+|+|.++|+++| .+||++++||++++++.|++++|.+||+|+||+++++.+++|++||.|+.||+|||||+..|+|
T Consensus        90 ~~w~~~~~~~Lk~~p-~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~GrstalVvDiGa~~~sv  168 (426)
T KOG0679|consen   90 MQWRYAYKNQLKVNP-EEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANGRSTALVVDIGATHTSV  168 (426)
T ss_pred             HHHHHHHhhhhhcCc-cccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcCCCceEEEEecCCCcee
Confidence            999999999999999 9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeecCeeccccceeecCcch--------------------------------------------------hchh-----
Q 020526          150 APVIEGAVQHIASRRFEVGDE--------------------------------------------------LAYE-----  174 (325)
Q Consensus       150 ~pv~~G~~i~~~~~~~~~ge~--------------------------------------------------~~~~-----  174 (325)
                      +||+||+++.+++.+.++|.+                                                  ..|.     
T Consensus       169 sPV~DG~Vlqk~vvks~laGdFl~~~~~q~l~~~~iei~P~y~ia~k~~v~~g~~an~~~~~~~~d~tes~~~y~~~~v~  248 (426)
T KOG0679|consen  169 SPVHDGYVLQKGVVKSPLAGDFLNDQCRQLLEPKNIEIIPMYNIASKEPVREGYPANAVLRVSIPDLTESYHNYMEQRVY  248 (426)
T ss_pred             eeeecceEeeeeeEecccchHHHHHHHHHHHhhcCcccCcHHHhhhcccccccCcchhhhcCChhHHHHHHHHHHHHHHH
Confidence            999999999999999999900                                                  0010     


Q ss_pred             ---hh--------------cccCCcceEECCCCcEEEecceeeccccccccCCCCC------------CcCCcHHHHHHH
Q 020526          175 ---KT--------------QKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILG------------LEAHGIVEQLVH  225 (325)
Q Consensus       175 ---~~--------------~~~~~~~~~~lpd~~~i~l~~e~~~~~E~lF~p~~~~------------~~~~~i~~~I~~  225 (325)
                         ++              ..+..++.|++|||.+..++.+||++||.||+|+...            ...-|+++++..
T Consensus       249 ~e~ke~v~qv~dtp~de~~~~~i~~~~~efP~g~~~~~G~er~ripe~lF~Ps~v~~~s~~~~~~~~~n~~lG~~~lv~s  328 (426)
T KOG0679|consen  249 QEFKESVLQVSDTPFDEEVAAQIPTKHFEFPDGYTLDFGAERFRIPEYLFKPSLVKSSSKEAGATSHINTMLGLPHLVYS  328 (426)
T ss_pred             HHHHHHHHhccCCCCcccccccCCCccccCCCCcccccCcceeecchhhcCcchhccccccccCCCCCccccCchHHHHh
Confidence               00              0112358999999999999999999999999998542            224589999999


Q ss_pred             HHHhCChHHHHhccccEEEecCCCCccchHHHHHHhh-ccCCCCcceEEeCCCCCCCCCCCceeeeehhhhhhccCCCCC
Q 020526          226 TISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQN  304 (325)
Q Consensus       226 ~i~~~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL-~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~l~~~~~  304 (325)
                      +|..||+|+|..|+.|||+|||+|+|+||.+||++|| .+.|.+ ++++++...   ..+|++++|+||||+|+|++|++
T Consensus       329 Si~~cDvdiR~~L~~nVivtGGtSliqG~s~RL~~ELs~~~P~s-rlki~as~~---t~eR~~~~WlGGSILASLgtFqq  404 (426)
T KOG0679|consen  329 SINMCDVDIRSSLLGNVIVTGGTSLIQGFSERLNKELSKRAPSS-RLKIIASGH---TVERRFQSWLGGSILASLGTFQQ  404 (426)
T ss_pred             hhccChHHHHHHhhccEEEecCcchhhhHHHHHHHHHHHhCCcc-eEEEEecCc---eeeehhhhhhhhHHHhccccHHH
Confidence            9999999999999999999999999999999999999 888887 999988766   34699999999999999999999


Q ss_pred             eeeeHHHHhhcCc-chhhcccC
Q 020526          305 QHITKADYDESGP-SVVHRKCF  325 (325)
Q Consensus       305 ~~itk~ey~e~G~-~~~~~k~~  325 (325)
                      +||+|+||||.|. +.+.|||.
T Consensus       405 ~WiSKqEYEE~G~d~~ve~rc~  426 (426)
T KOG0679|consen  405 LWISKQEYEEVGKDQLVERRCP  426 (426)
T ss_pred             HhhhHHHHHHhhhHHHHhhcCC
Confidence            9999999999998 89999994

>PTZ00280 Actin-related protein 3; Provisional

Probab=100.00  E-value=8.6e-71  Score=521.77  Aligned_cols=314  Identities=30%  Similarity=0.519  Sum_probs=277.2

Q ss_pred             CceEEEEcCCCcEEEeeeCCCCCCcEecccceeecCC-------------CcccccCcccccc-Cce-eccccCCeecCH
Q 020526            1 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLE-------------DGSSSVDNSTLVE-DVT-VDPVVRGFIRDW   65 (325)
Q Consensus         1 m~~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~~-------------~~~~g~~~~~~~~-~~~-~~p~~~g~i~d~   65 (325)
                      +++||||+||+++|+||| |++.|+.++||.+++...             +.++| +++.... .++ .+|+++|.|.||
T Consensus         4 ~~~iViD~GS~~~k~G~a-g~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~vG-~ea~~~~~~~~l~~Pi~~G~I~dw   81 (414)
T PTZ00280          4 LPVVVIDNGTGYTKMGYA-GNTEPTYIIPTLIADNSKQSRRRSKKGFEDLDFYIG-DEALAASKSYTLTYPMKHGIVEDW   81 (414)
T ss_pred             CCeEEEECCCCceEeeeC-CCCCCCEEecceeEEeccccccccccccccCCEEEc-chhhhCcCCcEEecCccCCEeCCH
Confidence            368999999999999999 999999999999976321             34678 7765544 455 499999999999


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhc----------CCc
Q 020526           66 DAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAV----------GRI  135 (325)
Q Consensus        66 ~~~~~il~~~~~~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~----------g~~  135 (325)
                      |.++.+|+|+|.+.|.+++ .++|+++++|++++...|++++|++||.|++|++++..+++||+|++          |++
T Consensus        82 d~~e~l~~~~~~~~L~~~p-~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~  160 (414)
T PTZ00280         82 DLMEKFWEQCIFKYLRCEP-EEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTL  160 (414)
T ss_pred             HHHHHHHHHHHHHhhccCC-CCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCce
Confidence            9999999999988899999 99999999999999999999999999999999999999999999999          999


Q ss_pred             eEEEEEcCCCceEEEEeecCeeccccceeecCcc--------------------------------hhchh-----hhcc
Q 020526          136 SGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGD--------------------------------ELAYE-----KTQK  178 (325)
Q Consensus       136 tglVVdiG~~~t~v~pv~~G~~i~~~~~~~~~ge--------------------------------~~~~~-----~~~~  178 (325)
                      ||+|||+|++.|+|+||+||+++.++++++++|.                                +.+|.     ++..
T Consensus       161 tglVVDiG~~~T~i~PV~~G~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~  240 (414)
T PTZ00280        161 TGTVIDSGDGVTHVIPVVDGYVIGSSIKHIPLAGRDITNFIQQMLRERGEPIPAEDILLLAQRIKEKYCYVAPDIAKEFE  240 (414)
T ss_pred             eEEEEECCCCceEEEEEECCEEcccceEEecCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCcccCcHHHHHH
Confidence            9999999999999999999999999999999991                                12221     1110


Q ss_pred             ----c--CCcceEECCC---Cc--EEEecceeeccccccccCCCCCCc-CCcHHHHHHHHHHhCChHHHHhccccEEEec
Q 020526          179 ----S--CEIEQHTLPD---GQ--VIRIGKERYTVGEALFQPSILGLE-AHGIVEQLVHTISTVSSENHRQLLENTVLCG  246 (325)
Q Consensus       179 ----~--~~~~~~~lpd---~~--~i~l~~e~~~~~E~lF~p~~~~~~-~~~i~~~I~~~i~~~~~d~r~~l~~nIil~G  246 (325)
                          .  .....|.+||   |+  .+.++.|||.+||+||+|..++.+ ..+|+++|.++|++||+|+|+.|++||+|+|
T Consensus       241 ~~~~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~G  320 (414)
T PTZ00280        241 KYDSDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSG  320 (414)
T ss_pred             HhhcCcccccceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeC
Confidence                1  1235688887   33  789999999999999999987655 4599999999999999999999999999999


Q ss_pred             CCCCccchHHHHHHhh-ccC----------------CCCcceEEeCCCCCCCCCCCceeeeehhhhhhccCCCCCeeeeH
Q 020526          247 GTTSMTGFEDRFQKEA-GLC----------------SSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITK  309 (325)
Q Consensus       247 G~s~~~G~~~rl~~eL-~~~----------------~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~l~~~~~~~itk  309 (325)
                      |+|++|||.+||++|| +++                |.+.+++|..+|+      +.+++|+|||++|++++|+++||||
T Consensus       321 G~s~~~Gf~eRL~~El~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~------~~~~~W~GgSilas~~~f~~~~itk  394 (414)
T PTZ00280        321 GSTMFKGFDKRLQRDVRKRVDRRLKKAEELSGGKLKPIPIDVNVVSHPR------QRYAVWYGGSMLASSPEFEKVCHTK  394 (414)
T ss_pred             CcccCcCHHHHHHHHHHHhccccccccccccccccCCCCceEEEecCCc------cceeEEEChhhcccCcchhhheEEH
Confidence            9999999999999999 876                3466888988887      8899999999999999999999999


Q ss_pred             HHHhhcCcchhhcc
Q 020526          310 ADYDESGPSVVHRK  323 (325)
Q Consensus       310 ~ey~e~G~~~~~~k  323 (325)
                      +||+|+|+++++|+
T Consensus       395 ~eY~E~G~~i~~~~  408 (414)
T PTZ00280        395 AEYDEYGPSICRYN  408 (414)
T ss_pred             HHHhccChHheeec
Confidence            99999999999887

>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton

Probab=100.00  E-value=1.9e-70  Score=517.67  Aligned_cols=316  Identities=35%  Similarity=0.670  Sum_probs=273.1

Q ss_pred             CceEEEEcCCCcEEEeeeCCCCCCcEecccceeecCC-----CcccccCcccc-ccCce-eccccCCeecCHHHHHHHHH
Q 020526            1 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLE-----DGSSSVDNSTL-VEDVT-VDPVVRGFIRDWDAMEDLLH   73 (325)
Q Consensus         1 m~~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~~-----~~~~g~~~~~~-~~~~~-~~p~~~g~i~d~~~~~~il~   73 (325)
                      .++||||+||++||+||| ||+.|+.++|+.+++...     +.++| ++... ...+. .+|+++|.+.|||.++.+|+
T Consensus         4 ~~~vViD~Gs~~~k~G~a-ge~~P~~v~ps~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~p~~~g~i~~~~~~e~i~~   81 (393)
T PF00022_consen    4 NKPVVIDNGSSTIKAGFA-GEDLPRVVIPSVVGRPRDKNSSNDYYVG-DEALSPRSNLELRSPIENGVIVDWDALEEIWD   81 (393)
T ss_dssp             SSEEEEEECSSEEEEEET-TSSS-SEEEESEEEEESSSSSSSSCEET-HHHHHTGTGEEEEESEETTEESSHHHHHHHHH
T ss_pred             CCEEEEECCCceEEEEEC-CCCCCCCcCCCccccccccccceeEEee-cccccchhheeeeeeccccccccccccccccc
Confidence            478999999999999999 999999999999987533     34677 55322 22444 49999999999999999999


Q ss_pred             HHHHhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCCceEEEEEcCCCceEEEEee
Q 020526           74 HVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVI  153 (325)
Q Consensus        74 ~~~~~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVdiG~~~t~v~pv~  153 (325)
                      |+|.+.|+.++ +++++++++|+++++..|+++++++||.|++|+++++++++||+|++|.+||+|||+|++.|+|+||+
T Consensus        82 ~~~~~~l~~~~-~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~tglVVD~G~~~t~v~pV~  160 (393)
T PF00022_consen   82 YIFSNLLKVDP-SDHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIPSPLLALYASGRTTGLVVDIGYSSTSVVPVV  160 (393)
T ss_dssp             HHHHTTT-SSG-GGSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEEHHHHHHHHTTBSSEEEEEESSS-EEEEEEE
T ss_pred             ccccccccccc-ccceeeeeccccCCchhhhhhhhhhhcccccceeeeeecccccccccccccccccccceeeeeeeeee
Confidence            99998899999 99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCeeccccceeecCcch-------------------------------hchh-----------h-------h--c-----
Q 020526          154 EGAVQHIASRRFEVGDE-------------------------------LAYE-----------K-------T--Q-----  177 (325)
Q Consensus       154 ~G~~i~~~~~~~~~ge~-------------------------------~~~~-----------~-------~--~-----  177 (325)
                      ||+++.++++++++|.+                               ..|.           |       .  .     
T Consensus       161 dG~~~~~~~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~  240 (393)
T PF00022_consen  161 DGYVLPHSIKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEE  240 (393)
T ss_dssp             TTEE-GGGBEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHH
T ss_pred             eccccccccccccccHHHHHHHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhccccccccccc
Confidence            99999999999999911                               0110           0       0  0     


Q ss_pred             --ccCCcceEECCCCcEEEecceeeccccccccCCCCCCcCC-------cHHHHHHHHHHhCChHHHHhccccEEEecCC
Q 020526          178 --KSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAH-------GIVEQLVHTISTVSSENHRQLLENTVLCGGT  248 (325)
Q Consensus       178 --~~~~~~~~~lpd~~~i~l~~e~~~~~E~lF~p~~~~~~~~-------~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~  248 (325)
                        .......|.||||+.+.++.+|+.++|+||+|...+.+..       +|+++|.++|++||+|.|+.|++||+|+||+
T Consensus       241 ~~~~~~~~~~~lPdg~~i~~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~  320 (393)
T PF00022_consen  241 QASENPEKSYELPDGQTIILGKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGS  320 (393)
T ss_dssp             HHCSTTTEEEE-TTSSEEEESTHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGG
T ss_pred             ccccccceecccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEeccc
Confidence              1223478999999999999999999999999998887765       9999999999999999999999999999999


Q ss_pred             CCccchHHHHHHhh-ccCCCCcceEEeCCC-CCCCCCCCceeeeehhhhhhccCCCCCeeeeHHHHhhcCcchhhcccC
Q 020526          249 TSMTGFEDRFQKEA-GLCSSAIRPTLVKPP-EYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF  325 (325)
Q Consensus       249 s~~~G~~~rl~~eL-~~~~~~~~v~v~~~~-~~~~~~~~~~~~W~G~si~a~l~~~~~~~itk~ey~e~G~~~~~~k~~  325 (325)
                      |++|||.+||++|| .+.+...+++|..++ +      |.+++|+|||++|++.+|+++||||+||+|+|+++++||||
T Consensus       321 S~i~G~~eRL~~eL~~~~~~~~~~~v~~~~~~------~~~~aW~Ggsilasl~~f~~~~itr~eYeE~G~~~i~rkc~  393 (393)
T PF00022_consen  321 SLIPGFKERLQQELRSLLPSSTKVKVIAPPSD------RQFAAWIGGSILASLSSFQSFWITREEYEEYGPSIIHRKCF  393 (393)
T ss_dssp             GGSTTHHHHHHHHHHHHSGTTSTEEEE--T-T------TTSHHHHHHHHHHTSGGGGGTSEEHHHHHHHGGGGHHHHT-
T ss_pred             ccccchHHHHHHHhhhhhhccccceeccCchh------hhhcccccceeeeccccccceeeeHHHHhCcCcceeeecCC
Confidence            99999999999999 888888899999988 6      89999999999999999999999999999999999999997

These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....

>smart00268 ACTIN Actin

Probab=100.00  E-value=1.7e-68  Score=500.95  Aligned_cols=315  Identities=38%  Similarity=0.686  Sum_probs=285.7

Q ss_pred             ceEEEEcCCCcEEEeeeCCCCCCcEecccceeecCC---------CcccccCcccccc-Cce-eccccCCeecCHHHHHH
Q 020526            2 EAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLE---------DGSSSVDNSTLVE-DVT-VDPVVRGFIRDWDAMED   70 (325)
Q Consensus         2 ~~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~~---------~~~~g~~~~~~~~-~~~-~~p~~~g~i~d~~~~~~   70 (325)
                      ++||||+||++||+||+ |++.|++++||++++..+         ..++| +++.... ..+ ++|+++|.|.|||.++.
T Consensus         2 ~~iviD~Gs~~~k~G~~-~~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~G-~~a~~~~~~~~~~~P~~~G~i~d~~~~e~   79 (373)
T smart00268        2 PAIVIDNGSGTIKAGFA-GEDEPQVVFPSIVGRPKDGKGMVGDAKDTFVG-DEAQEKRGGLELKYPIEHGIVENWDDMEK   79 (373)
T ss_pred             CeEEEECCCCcEEEeeC-CCCCCcEEccceeeEecccccccCCCcceEec-chhhhcCCCceecCCCcCCEEeCHHHHHH
Confidence            58999999999999999 999999999999876422         24678 7765444 334 49999999999999999


Q ss_pred             HHHHHHHhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCCceEEEEEcCCCceEEE
Q 020526           71 LLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIA  150 (325)
Q Consensus        71 il~~~~~~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVdiG~~~t~v~  150 (325)
                      +|+++|.+.|++++ +++++++++|.+++...|+++++++||.++++++++++++++|+|++|.++|+|||+|++.|+|+
T Consensus        80 i~~~~~~~~l~~~~-~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~  158 (373)
T smart00268       80 IWDYTFFNELRVEP-EEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLYASGRTTGLVIDSGDGVTHVV  158 (373)
T ss_pred             HHHHHHhhhcCCCC-ccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHHhCCCCEEEEEecCCCcceEE
Confidence            99999998899998 99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCeeccccceeecCcch--------------------------------hch-----hhhc--------ccCCcceE
Q 020526          151 PVIEGAVQHIASRRFEVGDE--------------------------------LAY-----EKTQ--------KSCEIEQH  185 (325)
Q Consensus       151 pv~~G~~i~~~~~~~~~ge~--------------------------------~~~-----~~~~--------~~~~~~~~  185 (325)
                      ||+||+++.++++++++|.+                                .+|     .++.        .......|
T Consensus       159 pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  238 (373)
T smart00268      159 PVVDGYVLPHAIKRIDIAGRDLTDYLKELLSERGYQFNSSAEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTY  238 (373)
T ss_pred             EEECCEEchhhheeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeE
Confidence            99999999999999999911                                011     0110        01123689


Q ss_pred             ECCCCcEEEecceeeccccccccCCCCCCcCCcHHHHHHHHHHhCChHHHHhccccEEEecCCCCccchHHHHHHhh-cc
Q 020526          186 TLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GL  264 (325)
Q Consensus       186 ~lpd~~~i~l~~e~~~~~E~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL-~~  264 (325)
                      .+|||+.+.++.+|+.++|+||+|...+.+..+|+++|.++|++||+|+|+.|++||+||||+|++|||.+||++|| ++
T Consensus       239 ~lpdg~~~~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~  318 (373)
T smart00268      239 ELPDGNTIKVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQL  318 (373)
T ss_pred             ECCCCCEEEEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHh
Confidence            99999999999999999999999999998999999999999999999999999999999999999999999999999 99


Q ss_pred             CCCCcceEEeCCCCCCCCCCCceeeeehhhhhhccCCCCCeeeeHHHHhhcCcchhhcccC
Q 020526          265 CSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF  325 (325)
Q Consensus       265 ~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~l~~~~~~~itk~ey~e~G~~~~~~k~~  325 (325)
                      .|...++++..+++      +.+++|.|||++|++++|++.||||+||+|+|+++++||||
T Consensus       319 ~p~~~~v~v~~~~~------~~~~~W~G~silas~~~f~~~~vtk~eY~E~G~~i~~~k~~  373 (373)
T smart00268      319 APKKLKVKVIAPPE------RKYSVWLGGSILASLSTFEDMWITKKEYEEHGSQIVERKCF  373 (373)
T ss_pred             CCCCceeEEecCCC------CccceEeCcccccCccchhhhEEEHHHHhhhCcceEEeecC
Confidence            99888899988887      88999999999999999999999999999999999999997

ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily

>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]

Probab=100.00  E-value=8.1e-67  Score=439.71  Aligned_cols=313  Identities=33%  Similarity=0.590  Sum_probs=282.5

Q ss_pred             ceEEEEcCCCcEEEeeeCCCCCCcEecccceeec------------CCCcccccCcccccc-Ccee-ccccCCeecCHHH
Q 020526            2 EAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRV------------LEDGSSSVDNSTLVE-DVTV-DPVVRGFIRDWDA   67 (325)
Q Consensus         2 ~~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~------------~~~~~~g~~~~~~~~-~~~~-~p~~~g~i~d~~~   67 (325)
                      ++||.|+|+.+.|+||| |++.|.++||+.+++.            .++..+| |++...+ -+++ |||++|.+.|||+
T Consensus         5 ~viV~DnGTGfVKcGyA-g~NFP~~~FPs~VGRPilR~~e~~g~~~iKD~mvG-deaselRs~L~i~YPmeNGivrnwdd   82 (389)
T KOG0677|consen    5 NVIVCDNGTGFVKCGYA-GENFPTHIFPSIVGRPILRAEEKVGNIEIKDLMVG-DEASELRSLLDINYPMENGIVRNWDD   82 (389)
T ss_pred             CeEEEeCCCceEEeccc-cCCCcccccchhcCchhhhhhhhccCeehhhhecc-chHHHHHHHHhcCCccccccccChHH
Confidence            57999999999999999 9999999999999874            2446678 8876665 3344 9999999999999


Q ss_pred             HHHHHHHHHHhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCCceEEEEEcCCCce
Q 020526           68 MEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKI  147 (325)
Q Consensus        68 ~~~il~~~~~~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVdiG~~~t  147 (325)
                      ++.+|+|.|.+.|+++| +++.++++||+++|.++|++|+|.+||++++.++++.-++++++|+.|..||+|||.|.+.|
T Consensus        83 M~h~WDytF~ekl~idp-~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~tGvVvDSGDGVT  161 (389)
T KOG0677|consen   83 MEHVWDYTFGEKLKIDP-TNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLTGVVVDSGDGVT  161 (389)
T ss_pred             HHHHHHhhhhhhccCCC-ccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccceEEEecCCCee
Confidence            99999999999999999 99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeecCeeccccceeecCc--------------------------------chhchhh-----hc----c-cCCcceE
Q 020526          148 DIAPVIEGAVQHIASRRFEVG--------------------------------DELAYEK-----TQ----K-SCEIEQH  185 (325)
Q Consensus       148 ~v~pv~~G~~i~~~~~~~~~g--------------------------------e~~~~~~-----~~----~-~~~~~~~  185 (325)
                      +|+||++|+.+++-.++++++                                |++||..     +.    + ..-..+|
T Consensus       162 Hi~PVye~~~l~HLtrRldvAGRdiTryLi~LLl~rGYafN~tADFETVR~iKEKLCYisYd~e~e~kLalETTvLv~~Y  241 (389)
T KOG0677|consen  162 HIVPVYEGFVLPHLTRRLDVAGRDITRYLIKLLLRRGYAFNHTADFETVREIKEKLCYISYDLELEQKLALETTVLVESY  241 (389)
T ss_pred             EEeeeecceehhhhhhhccccchhHHHHHHHHHHhhccccccccchHHHHHHHhhheeEeechhhhhHhhhhheeeeeee
Confidence            999999999999999999998                                3345421     10    1 1123799


Q ss_pred             ECCCCcEEEecceeeccccccccCCCCCCcCCcHHHHHHHHHHhCChHHHHhccccEEEecCCCCccchHHHHHHhh-cc
Q 020526          186 TLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GL  264 (325)
Q Consensus       186 ~lpd~~~i~l~~e~~~~~E~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL-~~  264 (325)
                      +||||..|.++.|||.+||+||+|.+++.+.+++.+++.++|+..|+|.|..++++|+|+||+++.||+..||++|| ++
T Consensus       242 tLPDGRvIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkElkql  321 (389)
T KOG0677|consen  242 TLPDGRVIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKELKQL  321 (389)
T ss_pred             ecCCCcEEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999 75


Q ss_pred             CC-----------CCcceEEeCCCCCCCCCCCceeeeehhhhhhcc-CCCCCeeeeHHHHhhcCcchhhcc
Q 020526          265 CS-----------SAIRPTLVKPPEYMPENLTLYSAWIGGAILAKV-VFPQNQHITKADYDESGPSVVHRK  323 (325)
Q Consensus       265 ~~-----------~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~l-~~~~~~~itk~ey~e~G~~~~~~k  323 (325)
                      .-           ..+++++-.+|.      +++-.++||+.+|++ .--+++|+||+||.|.|.+++.+.
T Consensus       322 yl~rVL~~d~~~l~KfkiRIEdPPr------RKhMVflGGAVLA~imkD~d~fW~skqeyqE~G~~~l~k~  386 (389)
T KOG0677|consen  322 YLDRVLKGDTDKLKKFKIRIEDPPR------RKHMVFLGGAVLAGIMKDKDEFWMSKQEYQEEGINVLNKL  386 (389)
T ss_pred             HHHHHHcCChhhhhheEEeccCCCc------cceeEEEchHHHHHHhcCCccceecHHHHHhhhHHHHHhh
Confidence            31           246888999998      899999999999995 555789999999999999988764

>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton

Probab=100.00  E-value=2.8e-65  Score=478.77  Aligned_cols=312  Identities=40%  Similarity=0.680  Sum_probs=279.8

Q ss_pred             eEEEEcCCCcEEEeeeCCCCCCcEecccceeecC----------CCcccccCccccccC--ce-eccccCCeecCHHHHH
Q 020526            3 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVL----------EDGSSSVDNSTLVED--VT-VDPVVRGFIRDWDAME   69 (325)
Q Consensus         3 ~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~----------~~~~~g~~~~~~~~~--~~-~~p~~~g~i~d~~~~~   69 (325)
                      +||||+||+++|+||+ |++.|++++||++++..          ....+| +++....+  +. ++|+++|.+.||+.++
T Consensus         1 ~iViD~Gs~~~r~G~a-~~~~p~~~~ps~v~~~~~~~~~~~~~~~~~~~G-~~a~~~~~~~~~~~~P~~~G~i~d~~~~e   78 (371)
T cd00012           1 AVVIDNGSGTIKAGFA-GEDAPRVVFPSCVGRPKHQSVMVGAGDKDYFVG-EEALEKRGLGLELIYPIEHGIVVDWDDME   78 (371)
T ss_pred             CEEEECCCCeEEEEeC-CCCCCceEeeccceeecCcccccccCCCceEEc-hhhhhCCCCceEEcccccCCEEeCHHHHH
Confidence            6999999999999999 99999999999997642          235678 77755543  55 4999999999999999


Q ss_pred             HHHHHHHHhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCCceEEEEEcCCCceEE
Q 020526           70 DLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDI  149 (325)
Q Consensus        70 ~il~~~~~~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVdiG~~~t~v  149 (325)
                      .+|+++|.+.+..++ +++++++++|+++++..|+++++++||.++++++++++++++|+|++|.++|+|||+|++.|+|
T Consensus        79 ~~~~~~~~~~l~~~~-~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~i  157 (371)
T cd00012          79 KIWDHLFFNELKVNP-EEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGRTTGLVVDSGDGVTHV  157 (371)
T ss_pred             HHHHHHHHHhcCCCC-CCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCCCeEEEEECCCCeeEE
Confidence            999999998888888 8999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeecCeeccccceeecCcch--------------------------------hch-----hhhc----c--cCCcceEE
Q 020526          150 APVIEGAVQHIASRRFEVGDE--------------------------------LAY-----EKTQ----K--SCEIEQHT  186 (325)
Q Consensus       150 ~pv~~G~~i~~~~~~~~~ge~--------------------------------~~~-----~~~~----~--~~~~~~~~  186 (325)
                      +||+||+++.+++.++++|.+                                .+|     .++.    .  ......|.
T Consensus       158 ~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~  237 (371)
T cd00012         158 VPVYDGYVLPHAIKRLDLAGRDLTRYLKELLRERGYELNSSDEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYE  237 (371)
T ss_pred             EEEECCEEchhhheeccccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEE
Confidence            999999999999999999921                                111     0110    0  11236799


Q ss_pred             CCCCcEEEecceeeccccccccCCCCCCcCCcHHHHHHHHHHhCChHHHHhccccEEEecCCCCccchHHHHHHhh-ccC
Q 020526          187 LPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLC  265 (325)
Q Consensus       187 lpd~~~i~l~~e~~~~~E~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL-~~~  265 (325)
                      +||++.+.++.||+.++|+||+|...+....+|+++|.++|+.||+|.|+.+++||+|+||+|++|||.+||++|| .+.
T Consensus       238 lpd~~~i~~~~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~  317 (371)
T cd00012         238 LPDGRTIKVGNERFRAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLA  317 (371)
T ss_pred             CCCCeEEEEChHHhhChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhC
Confidence            9999999999999999999999998888899999999999999999999999999999999999999999999999 888


Q ss_pred             CC--CcceEEeCCCCCCCCCCCceeeeehhhhhhccCCCCCeeeeHHHHhhcCcchhhcc
Q 020526          266 SS--AIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRK  323 (325)
Q Consensus       266 ~~--~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~l~~~~~~~itk~ey~e~G~~~~~~k  323 (325)
                      |.  ...+++...++      |.+++|.|||++|++++|++.||||+||+|+|+++++||
T Consensus       318 ~~~~~~~~~~~~~~~------~~~~aw~G~si~as~~~~~~~~itk~eY~E~G~~~~~~k  371 (371)
T cd00012         318 PPSKDTKVKVIAPPE------RKYSVWLGGSILASLSTFQQLWITKEEYEEHGPSIVHRK  371 (371)
T ss_pred             CcccceEEEEccCCC------ccccEEeCchhhcCchhhhheEeeHHHHhhhCchhEecC
Confidence            76  55667776666      899999999999999999999999999999999999987

Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.

>COG5277 Actin and related proteins [Cytoskeleton]

Probab=100.00  E-value=3.6e-63  Score=465.11  Aligned_cols=314  Identities=35%  Similarity=0.619  Sum_probs=283.8

Q ss_pred             eEEEEcCCCcEEEeeeCCCCCCcEecccceeec-----------CCCcccccCccccccC---ce-eccccCCeecCHHH
Q 020526            3 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRV-----------LEDGSSSVDNSTLVED---VT-VDPVVRGFIRDWDA   67 (325)
Q Consensus         3 ~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~-----------~~~~~~g~~~~~~~~~---~~-~~p~~~g~i~d~~~   67 (325)
                      +||||+||+.+|+||+ |++.|++++|+.+.+.           .++.++| +++....+   .+ ++|+++|.|.||++
T Consensus         8 ~iVIDnGS~~~k~Gfa-g~~~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~-ne~~~~~~~~~~~~~~p~~~g~i~~W~~   85 (444)
T COG5277           8 TIVIDNGSGTTKAGFA-GNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVG-NEAQNDRDNSLLELRYPIENGIILNWDA   85 (444)
T ss_pred             eEEEeCCCceEEeeec-CCCCceeecccccccccccccccccccccccccC-chhhhccCCccceeecccccCccCCcHH
Confidence            4999999999999999 9999999999999876           3456788 77765553   33 59999999999999


Q ss_pred             HHHHHHHHHHh--ccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCCc--eEEEEEcC
Q 020526           68 MEDLLHHVLYA--GLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRI--SGCTVDIG  143 (325)
Q Consensus        68 ~~~il~~~~~~--~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~--tglVVdiG  143 (325)
                      ++++|+|+|.+  .+...+ .+||+++++|++++.+.|+++++++||++++|++++..+++|++|+.|..  +|+|||+|
T Consensus        86 ~e~~w~~~~~~~~~~~~~~-~~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~~~g~ViD~G  164 (444)
T COG5277          86 MEQIWDYTFFNKGDLLPSP-EEHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSSDETGLVIDSG  164 (444)
T ss_pred             HHHHHHHhhcchhhccCCC-cCCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCCCCceEEEEcC
Confidence            99999999998  577777 99999999999999999999999999999999999999999999999999  99999999


Q ss_pred             CCceEEEEeecCeeccccceeecCcch----------------------------------------hc-------hhh-
Q 020526          144 HGKIDIAPVIEGAVQHIASRRFEVGDE----------------------------------------LA-------YEK-  175 (325)
Q Consensus       144 ~~~t~v~pv~~G~~i~~~~~~~~~ge~----------------------------------------~~-------~~~-  175 (325)
                      ++.|+|+||+||.++.++++++++|.+                                        .+       |.. 
T Consensus       165 ~~~t~v~PV~DG~~l~~a~~ri~~gG~~it~~l~~lL~~~~~~~~~~~l~~e~~~~~~ei~~~ik~e~~~~~~~~~y~~~  244 (444)
T COG5277         165 DSVTHVIPVVDGIVLPKAVKRIDIGGRDITDYLKKLLREKYPPSRGYNLKSELVEYSSEIVNEIKEEVCETDDESAYVSL  244 (444)
T ss_pred             CCceeeEeeeccccccccceeeecCcHHHHHHHHHHHhhcccccCCcccccccccccHHHHHHHHHhhccccccccchhh
Confidence            999999999999999999999999911                                        11       210 


Q ss_pred             --------hcc-----------------cCCcceEECCCCcEEEecce-eeccccccccCC--CCCCcCCc---------
Q 020526          176 --------TQK-----------------SCEIEQHTLPDGQVIRIGKE-RYTVGEALFQPS--ILGLEAHG---------  218 (325)
Q Consensus       176 --------~~~-----------------~~~~~~~~lpd~~~i~l~~e-~~~~~E~lF~p~--~~~~~~~~---------  218 (325)
                              ..+                 ......+.+|+++.+.++.+ ||.+||.+|+|.  ..+.+..+         
T Consensus       245 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~e~rf~~pE~lF~pe~~~~~l~~~~~~~~~~~~~  324 (444)
T COG5277         245 DAEEEFEEEEEKPAEKSTESTFQLSKETSIAKESKELPDGEEIEFGNEERFKAPEILFKPELPISGLEEAGKIDESKQEL  324 (444)
T ss_pred             cchHHHHHHhhhhhhhcccccccccchhccccccccCCCCceEeechhhhhhcchhhcCCccccccccccccchhhhhhh
Confidence                    000                 01125678999999999999 999999999999  77766666         


Q ss_pred             ------------------HHHHHHHHHHhCChHHHHhccccEEEecCCCCccchHHHHHHhh-ccCCCCcceEEeCCCCC
Q 020526          219 ------------------IVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKPPEY  279 (325)
Q Consensus       219 ------------------i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL-~~~~~~~~v~v~~~~~~  279 (325)
                                        |++++.++|..||.+.|+.|++||+|+||++++|||.+||++|| .+.|....++|+.+++ 
T Consensus       325 ~~~~~~~~~~~~~~~~~gl~e~v~~si~~~~~~~r~~l~~nivitGGts~~pg~~~Rl~~el~~~~p~~~~v~v~~~~~-  403 (444)
T COG5277         325 VAENYEISPTNLGNDIAGLPELVYQSIQICDEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSLAPSIWKVSVIPPPD-  403 (444)
T ss_pred             hhhccccccccccccccchHHHHHHHHHhccHHHHHHHhhCEEEecCccCCCCHHHHHHHHHHhhcCCCCceeeecCCc-
Confidence                              99999999999999999999999999999999999999999999 9999989999999998 


Q ss_pred             CCCCCCceeeeehhhhhhccCCCCCeeeeHHHHhhcCcchhhcccC
Q 020526          280 MPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF  325 (325)
Q Consensus       280 ~~~~~~~~~~W~G~si~a~l~~~~~~~itk~ey~e~G~~~~~~k~~  325 (325)
                           |.+.+|+|||++|++.+|++.||||+||+|+|++++++|||
T Consensus       404 -----~~~~~W~GaSila~~~~~~~~~itk~eY~e~G~~~~~~~~~  444 (444)
T COG5277         404 -----PSLDAWLGASILASLETFQQLWITKEEYEEHGPDILQEKRF  444 (444)
T ss_pred             -----hhhccccchhhhccccchhheEeeHHHhhhhhhHHHhhccC
Confidence                 99999999999999999999999999999999999999986

>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]

Probab=100.00  E-value=3.4e-61  Score=416.11  Aligned_cols=315  Identities=26%  Similarity=0.473  Sum_probs=275.4

Q ss_pred             CceEEEEcCCCcEEEeeeCCCCCCcEecccceeecC---CCcccccCccccccCce----eccccCCeecCHHHHHHHHH
Q 020526            1 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVL---EDGSSSVDNSTLVEDVT----VDPVVRGFIRDWDAMEDLLH   73 (325)
Q Consensus         1 m~~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~---~~~~~g~~~~~~~~~~~----~~p~~~g~i~d~~~~~~il~   73 (325)
                      |++||+|+|++++|+|++ +...|. ++|++..+.+   ++.++| ++....+|..    ++|+++|.+++|+....+|+
T Consensus         3 ~~tiVlDNGay~~KiG~s-~~~~p~-~vpNcl~kaK~~~rr~f~~-nei~ec~D~ssL~y~rp~erGyLvnW~tq~~vWD   79 (400)
T KOG0680|consen    3 TTTIVLDNGAYNIKIGPS-TNKKPF-VVPNCLAKAKFGRRRSFLA-NEIDECKDISSLFYRRPHERGYLVNWDTQSQVWD   79 (400)
T ss_pred             CceEEEcCCceeEEeccC-CCCCce-eccchhhhcccccchhhhh-hhhhhccCccceEEeehhhcceeEeehhHHHHHH
Confidence            578999999999999999 787785 5677776542   237888 8877666554    58999999999999999999


Q ss_pred             HHHHhcc-CCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhc---C--------CceEEEEE
Q 020526           74 HVLYAGL-GWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAV---G--------RISGCTVD  141 (325)
Q Consensus        74 ~~~~~~l-~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~---g--------~~tglVVd  141 (325)
                      ++|.+.- .++. +++++++++|.++-++..+...|++||+|++.++.-...+.++++-.   +        ...++|||
T Consensus        80 y~f~~~~~~~~~-~~~~ivlTep~~~~psi~~~t~eilFEey~fd~v~kttaa~lva~~~~~~~ne~~tt~~~~c~lVID  158 (400)
T KOG0680|consen   80 YCFGNPGFDVEG-KDHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTSSECCLVID  158 (400)
T ss_pred             HHhcCCCcCccc-CcceEEEecccccccchhhhHHHHHHHHhccceEeecCHHHhcchhhhccCCccccccccceEEEEe
Confidence            9998643 3444 89999999999999999999999999999999999999999988862   1        23789999


Q ss_pred             cCCCceEEEEeecCeeccccceeecCcch------------------------------hchh-----hhc--------c
Q 020526          142 IGHGKIDIAPVIEGAVQHIASRRFEVGDE------------------------------LAYE-----KTQ--------K  178 (325)
Q Consensus       142 iG~~~t~v~pv~~G~~i~~~~~~~~~ge~------------------------------~~~~-----~~~--------~  178 (325)
                      .|++.|+|+|+.+|.++.++++++++|.+                              .||.     +.+        +
T Consensus       159 sGysfThIip~v~g~~~~qaV~RiDvGGK~LTn~LKE~iSyR~lNvmdET~vVNeiKEdvcfVSqnF~~~m~~~~~k~~~  238 (400)
T KOG0680|consen  159 SGYSFTHIIPVVKGIPYYQAVKRIDVGGKALTNLLKETISYRHLNVMDETYVVNEIKEDVCFVSQNFKEDMDIAKTKFQE  238 (400)
T ss_pred             CCCceEEEehhhcCcchhhceEEeecchHHHHHHHHHHhhhhhhcccchhhhhhhhhhheEEechhhHHHHHHHhhcccc
Confidence            99999999999999999999999999922                              2221     111        1


Q ss_pred             cCCcceEECCC-------------------CcEEEecceeeccccccccCCCCCCcCCcHHHHHHHHHHhCChHHHHhcc
Q 020526          179 SCEIEQHTLPD-------------------GQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLL  239 (325)
Q Consensus       179 ~~~~~~~~lpd-------------------~~~i~l~~e~~~~~E~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~  239 (325)
                      +.....|.|||                   .+.++|.+|||.+||+||+|++.++.++||+++|+++|+.||..+|+.|+
T Consensus       239 ~~~~i~YvLPDF~T~k~Gyvr~~~vk~~~d~qii~L~nErF~IPEilF~Psdi~I~q~GIpEAV~esl~~~Pe~~~p~l~  318 (400)
T KOG0680|consen  239 NKVMIDYVLPDFSTSKRGYVRNEDVKLPEDEQIITLTNERFTIPEILFSPSDIGIQQPGIPEAVLESLSMLPEEVRPLLL  318 (400)
T ss_pred             ceeEEEEecCCcccccceeEecCCCCCCCCcceeeecccccccchhhcChhhcCcccCCchHHHHHHHHhCHHHHHHHHH
Confidence            11125666665                   46788999999999999999999999999999999999999999999999


Q ss_pred             ccEEEecCCCCccchHHHHHHhh-ccCCCCcceEEeCCCCCCCCCCCceeeeehhhhhhccCCCCCeeeeHHHHhhcCcc
Q 020526          240 ENTVLCGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPS  318 (325)
Q Consensus       240 ~nIil~GG~s~~~G~~~rl~~eL-~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~l~~~~~~~itk~ey~e~G~~  318 (325)
                      .||+++||++++|||.+||..|| +++|.++.++|+.+.+      |..-+|.||+-++.++.|...||||+||+|+|++
T Consensus       319 ~NIv~iGGn~~fPgF~~RL~~Elr~l~P~d~~v~V~~p~d------p~~~~W~~g~~~~~~~~~~~~~itR~dy~E~G~~  392 (400)
T KOG0680|consen  319 ENIVCIGGNSNFPGFRQRLARELRSLLPADWEVSVSVPED------PITFAWEGGSEFAKTDSFEKAVITREDYEEHGPS  392 (400)
T ss_pred             hcEEEecCccCCcchHHHHHHHHHhhCCccceEEEecCCC------cceeeehhccccccCcchhcceecHhhHhhcCch
Confidence            99999999999999999999999 9999999999998877      8999999999999999999999999999999999


Q ss_pred             hhhcccC
Q 020526          319 VVHRKCF  325 (325)
Q Consensus       319 ~~~~k~~  325 (325)
                      ++.+|+|
T Consensus       393 ~~~~~~~  399 (400)
T KOG0680|consen  393 WCTKKRF  399 (400)
T ss_pred             hhhhhcc
Confidence            9999986

>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]

Probab=100.00  E-value=2e-51  Score=355.99  Aligned_cols=311  Identities=28%  Similarity=0.429  Sum_probs=262.3

Q ss_pred             eEEEEcCCCcEEEeeeCCCCCCcEecccceeec------------------CCCcccccCccccccCcee-ccccCCeec
Q 020526            3 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRV------------------LEDGSSSVDNSTLVEDVTV-DPVVRGFIR   63 (325)
Q Consensus         3 ~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~------------------~~~~~~g~~~~~~~~~~~~-~p~~~g~i~   63 (325)
                      ++|+|+|+.++|.||+ |...|++++|++++..                  ..+.++| |++.+.-.+++ ||+++|.+.
T Consensus         6 p~V~d~Gtgytklg~a-gn~~p~~i~p~~ia~~~~~~~s~~~~~~~~~~~~dldf~ig-~eal~~~~ysl~ypiRhg~ve   83 (415)
T KOG0678|consen    6 PCVIDNGTGYTKLGYA-GNTEPQFIIPTAIAVKESAAVSSKATRRVKRGTEDLDFFIG-DEALDATTYSLKYPIRHGQVE   83 (415)
T ss_pred             ceeeccCcceeeeecc-ccCCcccccceeEEeccccccccchhhhhhccccccceecc-cHHHhhcccccccceeccccc
Confidence            4899999999999999 9999999999998652                  1236778 88766335555 999999999


Q ss_pred             CHHHHHHHHHHHHHhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcC--------Cc
Q 020526           64 DWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVG--------RI  135 (325)
Q Consensus        64 d~~~~~~il~~~~~~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g--------~~  135 (325)
                      |||.++++|...+.++|...| .+|..++++|+++++++|+..++++||.|||+.+++.-++++|+.++-        .-
T Consensus        84 ~wd~mer~~~q~ifkylr~eP-edh~fLlteppln~penreytaeImfEsfnvpglyiAVqavLALaaswts~~v~er~l  162 (415)
T KOG0678|consen   84 DWDLMERFWEQCIFKYLRAEP-EDHYFLLTEPPLNQPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERFL  162 (415)
T ss_pred             cHHHHHHHHhhhhhhhhcCCc-ccceEEecCCCCCCchhhHHHHHhhhhhccCchHHHHHHHHHHHHHHHHHhhhhhhee
Confidence            999999999999999999999 999999999999999999999999999999999999999999988763        35


Q ss_pred             eEEEEEcCCCceEEEEeecCeeccccceeecCcch--------------------------------hch-----hhhc-
Q 020526          136 SGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGDE--------------------------------LAY-----EKTQ-  177 (325)
Q Consensus       136 tglVVdiG~~~t~v~pv~~G~~i~~~~~~~~~ge~--------------------------------~~~-----~~~~-  177 (325)
                      ||+|||.|.+.|+|.||.+||++-+++++++++.+                                .||     .++. 
T Consensus       163 tG~VidsGdgvThvipvaEgyVigScik~iPiagrdiT~fiQ~llRer~~~iP~e~sl~tak~iKe~ycy~cPdivkef~  242 (415)
T KOG0678|consen  163 TGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREVGIPPEQSLETAKAIKEKYCYTCPDIVKEFA  242 (415)
T ss_pred             eeEEEecCCCeeEEEEeecceEEeeeeccccccCCchhHHHHHHhhCCCCCCChHHhhhhhHHHHhhhcccCcHHHHHHH
Confidence            99999999999999999999999999999999821                                111     0110 


Q ss_pred             ---ccCC--cceEE---CCC--CcEEEecceeeccccccccCCCCCCc-CCcHHHHHHHHHHhCChHHHHhccccEEEec
Q 020526          178 ---KSCE--IEQHT---LPD--GQVIRIGKERYTVGEALFQPSILGLE-AHGIVEQLVHTISTVSSENHRQLLENTVLCG  246 (325)
Q Consensus       178 ---~~~~--~~~~~---lpd--~~~i~l~~e~~~~~E~lF~p~~~~~~-~~~i~~~I~~~i~~~~~d~r~~l~~nIil~G  246 (325)
                         ..+.  .++|.   .-.  ...++++-|||..||++|+|.....+ -..|++++...|++||+|+|+.||+||++.|
T Consensus       243 k~d~ep~K~ikq~~~~~~i~~~~~~vDvgyerFlgpEiff~Pe~a~~d~~~~~~~~vd~~Iq~~pIdvrr~ly~nivlsg  322 (415)
T KOG0678|consen  243 KYDREPAKWIKQYTGINVITGKKFVVDVGYERFLGPEIFFHPEFANPDFLTPLSEVVDWVIQHCPIDVRRPLYKNIVLSG  322 (415)
T ss_pred             HhccCHHHHHHHHhccchhcCCceeecccHHhhcChhhhcCccccCCccCcchHHHhhhhhhhCCcccchhhhhHHhhcc
Confidence               0000  01111   111  23466788999999999999977654 4689999999999999999999999999999


Q ss_pred             CCCCccchHHHHHHhh-ccCC--------------CCcceEEeCCCCCCCCCCCceeeeehhhhhhccCCCCCeeeeHHH
Q 020526          247 GTTSMTGFEDRFQKEA-GLCS--------------SAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKAD  311 (325)
Q Consensus       247 G~s~~~G~~~rl~~eL-~~~~--------------~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~l~~~~~~~itk~e  311 (325)
                      |.+++++|..|+++++ .+..              ..+.++++.+..      .++++|.|||++++.+.|...+-||++
T Consensus       323 gst~fk~fgr~lqrD~kr~vd~rl~~s~~lsg~k~~~vdvqvish~~------qr~avwfggs~lastpef~~~~~tk~~  396 (415)
T KOG0678|consen  323 GSTMFKDFGRRLQRDLKRLVDTRLAESEGLSGIKSKPVDVQVLSHLL------QRTAVWFGGSKLASTPEFVPACHTKED  396 (415)
T ss_pred             chHHHHHhhhhccHHHHHHHHHHHHHhcccccCCCCCceeehhhhhh------hhcceeccCccccCCcccccccCcchh
Confidence            9999999999999998 6432              224567777766      789999999999999999999999999


Q ss_pred             HhhcCcchhhc
Q 020526          312 YDESGPSVVHR  322 (325)
Q Consensus       312 y~e~G~~~~~~  322 (325)
                      |+|+|+++++.
T Consensus       397 yee~g~si~r~  407 (415)
T KOG0678|consen  397 YEEYGPSICRT  407 (415)
T ss_pred             hhhhChhhhhc
Confidence            99999999875

>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]

Probab=100.00  E-value=8e-49  Score=359.26  Aligned_cols=314  Identities=25%  Similarity=0.482  Sum_probs=265.0

Q ss_pred             ceEEEEcCCCcEEEeeeCCCCCCcEecccceeecCCC------cccccCcccccc---CceeccccCCeecCHHHHHHHH
Q 020526            2 EAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLED------GSSSVDNSTLVE---DVTVDPVVRGFIRDWDAMEDLL   72 (325)
Q Consensus         2 ~~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~~~------~~~g~~~~~~~~---~~~~~p~~~g~i~d~~~~~~il   72 (325)
                      .|||||+||+.+|+||+ |+..|+.+|++++.+..++      ..+| +.....+   ...+.|+++.+|+||+.+|.++
T Consensus        24 ~piVIDNGS~~~RaGw~-ge~eP~lvFrNvl~r~Rdrk~~~s~t~vg-nd~~~~~~~Rs~~rSPFd~nVvtNwel~E~il  101 (645)
T KOG0681|consen   24 IPIVIDNGSYECRAGWA-GEKEPRLVFRNVLTRPRDRKLGASVTLVG-NDILNFQGVRSSPRSPFDRNVVTNWELMEQIL  101 (645)
T ss_pred             CcEEEeCCceeEeeccc-CCCCccchhhhhhcccccccccccccccc-chhhhhhhhhccCCCCCcCCccccHHHHHHHH
Confidence            47999999999999999 9999999999999764321      2456 4443333   2236899999999999999999


Q ss_pred             HHHHHhccCCCC-CCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhh-cC---CceEEEEEcCCCce
Q 020526           73 HHVLYAGLGWEE-GNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYA-VG---RISGCTVDIGHGKI  147 (325)
Q Consensus        73 ~~~~~~~l~~~~-~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~-~g---~~tglVVdiG~~~t  147 (325)
                      +|+|. +|+++. +-+||+++||..++|...|..|.++|||.+|+|+|.+--+++.+++. .+   ..+|+||++|++.|
T Consensus       102 DY~F~-~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~~hN~~~~~~~~~liis~g~~~T  180 (645)
T KOG0681|consen  102 DYIFG-KLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSFYHNYGKSSNKSGLIISMGHSAT  180 (645)
T ss_pred             HHHHH-hcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHHhhccCcccCcceEEEecCCCcc
Confidence            99996 588875 45899999999999999999999999999999999999999999994 23   34799999999999


Q ss_pred             EEEEeecCeeccccceeecCc-----------------------------------------------------------
Q 020526          148 DIAPVIEGAVQHIASRRFEVG-----------------------------------------------------------  168 (325)
Q Consensus       148 ~v~pv~~G~~i~~~~~~~~~g-----------------------------------------------------------  168 (325)
                      +|.||.||..+...++++++|                                                           
T Consensus       181 ~vipvldG~~il~~~kRiN~GG~qa~dYL~~Lmq~Kyp~~~~~~t~sk~E~l~~eHcyis~DY~eei~~~l~~d~~d~~~  260 (645)
T KOG0681|consen  181 HVIPVLDGRLILKDVKRINWGGYQAGDYLSRLMQLKYPFHLNAFTGSKAERLLHEHCYISPDYREEIIKILEMDYYDENR  260 (645)
T ss_pred             eeEEEecCchhhhcceeeccCcchHHHHHHHHHhccCccchhhcCHHHHHHHhhhhceeCcchHHHHHHHhhhhhhhccc
Confidence            999999999999999999999                                                           


Q ss_pred             --------------------------------------------------------------------------------
Q 020526          169 --------------------------------------------------------------------------------  168 (325)
Q Consensus       169 --------------------------------------------------------------------------------  168 (325)
                                                                                                      
T Consensus       261 ~~~qlP~~evl~~~e~~l~Ae~kqekRlq~~a~lkrv~k~~~re~~redeqql~~~~kaq~e~e~~~D~~q~~~ll~v~~  340 (645)
T KOG0681|consen  261 NYFQLPYTEVLAEVELALTAEKKQEKRLQEQAALKRVEKINARENRREDEQQLESYNKAQGEQESNLDLEQKFPLLNVPA  340 (645)
T ss_pred             eEEecccccccchhhhhccHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHhhhchhcCccHhhhchhhcchh
Confidence                                                                                            


Q ss_pred             --------------------------------ch------------hch-------------------------------
Q 020526          169 --------------------------------DE------------LAY-------------------------------  173 (325)
Q Consensus       169 --------------------------------e~------------~~~-------------------------------  173 (325)
                                                      |+            ..|                               
T Consensus       341 eL~~d~lk~k~~qr~lkas~dar~rar~eke~Er~~k~~~~r~~~~~swl~e~r~k~~~ller~~~kk~lk~e~~~r~s~  420 (645)
T KOG0681|consen  341 ELDEDQLKEKKKQRILKASTDARLRARVEKELERLNKLEEEREENLISWLEELREKLEKLLERISQKKRLKQELKDRKSH  420 (645)
T ss_pred             hhCHHHHHHHHHHHHHHhhhhhhccccccchHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence                                            00            000                               


Q ss_pred             ----------------------------------------hhhcccC-----------------C--cceEE--------
Q 020526          174 ----------------------------------------EKTQKSC-----------------E--IEQHT--------  186 (325)
Q Consensus       174 ----------------------------------------~~~~~~~-----------------~--~~~~~--------  186 (325)
                                                              +...+..                 .  ...+.        
T Consensus       421 ~Sq~rmr~~~~La~~~~~rrk~~~~t~D~fg~~Dedw~vYe~lee~~~~~~~dl~~l~~~L~e~Dp~F~~~~~~~~d~~~  500 (645)
T KOG0681|consen  421 ASQLRMRALARLAYEQVVRRKRKEATPDNFGARDEDWDVYEDLEEENKSILEDLKSLNHELLEFDPHFTQYVEGTTDPRN  500 (645)
T ss_pred             hhHhhhHHHHhhhHHHHHHHhcccCCccccccchhhHHHHHHhhhhhhhHHHHHHHHHHHHHhhCcccccccccccCccc
Confidence                                                    0000000                 0  00000        


Q ss_pred             --CC----CCcEEEecceeeccccccccCCCCCCcCCcHHHHHHHHHHhCChHHHHhccccEEEecCCCCccchHHHHHH
Q 020526          187 --LP----DGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQK  260 (325)
Q Consensus       187 --lp----d~~~i~l~~e~~~~~E~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~  260 (325)
                        +|    ....+.++.|++.+||++|+|+++|.++.||.+++..++.+.|-|.+..|.+||+||||.|++||+.+||..
T Consensus       501 ~~~p~~~~e~~qlh~nVEriRvPEIiFqPsiiG~dQaGl~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~k  580 (645)
T KOG0681|consen  501 GVLPGFTAEDYQLHLNVERIRVPEIIFQPSIIGIDQAGLAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKK  580 (645)
T ss_pred             CcchhHHHhhhhhhhcceeeccceeeeccccccchhhhHHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHH
Confidence              00    012345789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hh-ccCCCCcceEEeCCCCCCCCCCCceeeeehhhhhhccCCCCCeeeeHHHHhhcCcchhhccc
Q 020526          261 EA-GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKC  324 (325)
Q Consensus       261 eL-~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~l~~~~~~~itk~ey~e~G~~~~~~k~  324 (325)
                      || .+.|-..+++|....+      |.+.+|.||+.+|.-.+|...|+||+||+|+|+.+++..+
T Consensus       581 Elt~mrP~gS~i~V~rasd------P~LDAW~GA~~~a~n~~f~~~~~Tr~dy~E~G~e~~kEh~  639 (645)
T KOG0681|consen  581 ELTSMRPVGSSINVVRASD------PVLDAWRGASAWAANPTFTLTQITRKDYEEKGEEYLKEHV  639 (645)
T ss_pred             HhheecccCCceEEEecCC------cchhhhhhhHHhhcCcccchhhhhHHhhhhhhHHHHHHHh
Confidence            99 9999988999998888      9999999999999999999999999999999999887654

>KOG0797 consensus Actin-related protein [Cytoskeleton]

Probab=100.00  E-value=2.2e-32  Score=249.77  Aligned_cols=268  Identities=19%  Similarity=0.335  Sum_probs=202.7

Q ss_pred             ccccCCeecC----------HHHHHHHHHHHHHhccCCCC--CCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEe
Q 020526           55 DPVVRGFIRD----------WDAMEDLLHHVLYAGLGWEE--GNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSS  122 (325)
Q Consensus        55 ~p~~~g~i~d----------~~~~~~il~~~~~~~l~~~~--~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~  122 (325)
                      +|+++|...-          .+++++||+|++.+.|++.+  ..++.+|++.|....+...+.+..++|-+|+|.++.++
T Consensus       183 ~Pir~G~fNv~~~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~  262 (618)
T KOG0797|consen  183 HPIRRGHFNVSPPYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVH  262 (618)
T ss_pred             cccccceeccCCcchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEE
Confidence            8999998753          45789999999999898876  46899999999999999999999999999999999999


Q ss_pred             chhhhhhhhcCCceEEEEEcCCCceEEEEeecCeeccccceeecCcch-------------------------hc-----
Q 020526          123 EQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGDE-------------------------LA-----  172 (325)
Q Consensus       123 ~~~~~a~~~~g~~tglVVdiG~~~t~v~pv~~G~~i~~~~~~~~~ge~-------------------------~~-----  172 (325)
                      .++++|+|++|.+++||||||+..|+|+||-||..++++...+++|..                         .+     
T Consensus       263 QESlaatfGaGlss~CVVdiGAQkTsIaCVEdGvs~~ntri~L~YGGdDitr~f~~ll~rs~FPy~d~~v~~~~d~lLl~  342 (618)
T KOG0797|consen  263 QESLAATFGAGLSSACVVDIGAQKTSIACVEDGVSLPNTRIILPYGGDDITRCFLWLLRRSGFPYQDCDVLAPIDWLLLN  342 (618)
T ss_pred             hhhhHHHhcCCccceeEEEccCcceeEEEeecCccccCceEEeccCCchHHHHHHHHHHhcCCCcccccccccccHHHHH
Confidence            999999999999999999999999999999999999999999999911                         00     


Q ss_pred             -----hh---hhcccCCc--ceEECCCC----cEEEecceeeccccccccCCCCC-------------------------
Q 020526          173 -----YE---KTQKSCEI--EQHTLPDG----QVIRIGKERYTVGEALFQPSILG-------------------------  213 (325)
Q Consensus       173 -----~~---~~~~~~~~--~~~~lpd~----~~i~l~~e~~~~~E~lF~p~~~~-------------------------  213 (325)
                           |.   ......+.  -.+.-||+    .++.+++|...+|=+||.|.+++                         
T Consensus       343 ~LKe~Fc~l~~a~~~vQ~~~F~~R~pn~~~~kytfk~~DE~mlAPlaLF~P~lf~~~~tk~~~~q~~~q~d~~d~fd~e~  422 (618)
T KOG0797|consen  343 QLKEKFCHLRAAELGVQLTVFSYREPNPPTLKYTFKLGDEVMLAPLALFYPNLFVIEGTKSHKNQSFPQPDREDLFDYEY  422 (618)
T ss_pred             HHHHHhccccHhhhhhhhhhhhccCCCCcceeeeeeccchhhccchhhhhhhhhhccccccccccccCCCCcccccchhh
Confidence                 00   00000000  00011111    01111222222222222222110                         


Q ss_pred             --------------------------------------------------------------------------CcC---
Q 020526          214 --------------------------------------------------------------------------LEA---  216 (325)
Q Consensus       214 --------------------------------------------------------------------------~~~---  216 (325)
                                                                                                ...   
T Consensus       423 ~~~~~~~~~~~~~g~~~l~ls~~i~~~~~~~~~l~~~~d~~Elg~t~~d~f~p~~~s~~gslaa~~i~n~~~~~~~f~gl  502 (618)
T KOG0797|consen  423 LLEDTWKQDFGGGGNDGLQLSDSIGFSNRIRDQLPEKPDKEELGVTLKDNFAPLEKSIVGSLAAASIMNKKGLYESFYGL  502 (618)
T ss_pred             hhhhcccccccccccccccccccccccccccccccccccchhhccccccccCCchhhhhhhhhhhhhhcccceeccccch
Confidence                                                                                      001   


Q ss_pred             -CcHHHHHHHHHHhC-ChHHHHhccccEEEecCCCCccchHHHHHHhh-ccCCC-C---cceEEeCCCCCCCCCCCceee
Q 020526          217 -HGIVEQLVHTISTV-SSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCSS-A---IRPTLVKPPEYMPENLTLYSA  289 (325)
Q Consensus       217 -~~i~~~I~~~i~~~-~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL-~~~~~-~---~~v~v~~~~~~~~~~~~~~~~  289 (325)
                       ..+.+.|..+|..+ ..|.++.|++.|.++||+.++||+.+-|++.+ ...|. .   ..|.|+.+|.   .++|++.+
T Consensus       503 ~l~ldqsii~sid~~~sdd~~rKl~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~pr---dMdp~~Va  579 (618)
T KOG0797|consen  503 LLALDQSIISSIDSALSDDTKRKLFSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPR---DMDPQFVA  579 (618)
T ss_pred             hhccchhHHHhhhhhccchhhHhhhhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCc---CCCchheE
Confidence             13445577777664 45789999999999999999999999999998 55443 2   3788898886   45799999


Q ss_pred             eehhhhhhccCCCCCeeeeHHHHhhcCcchhhcccC
Q 020526          290 WIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF  325 (325)
Q Consensus       290 W~G~si~a~l~~~~~~~itk~ey~e~G~~~~~~k~~  325 (325)
                      |.||+++|-+..-.+.||++.||.-+|.++++.||+
T Consensus       580 WKGaaIla~l~~~~ELwI~~~dW~~~G~RvL~~k~~  615 (618)
T KOG0797|consen  580 WKGAAILAILDFVRELWIENSDWQVHGVRVLQYKKY  615 (618)
T ss_pred             ecchhhhhHHHHHHHHheechhHhhhhhhhhhhccc
Confidence            999999999999999999999999999999999984

>PRK13930 rod shape-determining protein MreB; Provisional

Probab=99.97  E-value=2.2e-31  Score=246.32  Aligned_cols=269  Identities=19%  Similarity=0.258  Sum_probs=202.3

Q ss_pred             eEEEEcCCCcEEEeeeCCCCCCcEecccceeecCC---CcccccCcccccc-----Cce-eccccCCeecCHHHHHHHHH
Q 020526            3 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLE---DGSSSVDNSTLVE-----DVT-VDPVVRGFIRDWDAMEDLLH   73 (325)
Q Consensus         3 ~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~~---~~~~g~~~~~~~~-----~~~-~~p~~~g~i~d~~~~~~il~   73 (325)
                      .++||+||.++|+|++ ++. +....||+++....   ..++| +++....     +++ .+|+++|.|.||+.++.+|+
T Consensus        10 ~vgiDlGt~~t~i~~~-~~~-~~~~~ps~v~~~~~~~~~~~vG-~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~e~ll~   86 (335)
T PRK13930         10 DIGIDLGTANTLVYVK-GKG-IVLNEPSVVAIDTKTGKVLAVG-EEAKEMLGRTPGNIEAIRPLKDGVIADFEATEAMLR   86 (335)
T ss_pred             ceEEEcCCCcEEEEEC-CCC-EEEecCCEEEEECCCCeEEEEc-HHHHHhhhcCCCCeEEeecCCCCeEcCHHHHHHHHH
Confidence            3899999999999999 774 56678999876432   25789 8875432     344 49999999999999999999


Q ss_pred             HHHHhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCC-----ceEEEEEcCCCceE
Q 020526           74 HVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKID  148 (325)
Q Consensus        74 ~~~~~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVdiG~~~t~  148 (325)
                      +++.+.+...+...++++++.|...+...|+.+.+ +||.++++.++++++|+||++++|.     .+++|||+|++.|+
T Consensus        87 ~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~-~~e~~g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG~gttd  165 (335)
T PRK13930         87 YFIKKARGRRFFRKPRIVICVPSGITEVERRAVRE-AAEHAGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGGGTTE  165 (335)
T ss_pred             HHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHH-HHHHcCCCeEEecccHHHHHHhcCCCcCCCCceEEEEeCCCeEE
Confidence            99966444333257889999999988888877777 7899999999999999999999987     57899999999999


Q ss_pred             EEEeecCeeccccceeecCcch-----------hchh-----------hhc-cc---C-CcceEEC-----CCC--cEEE
Q 020526          149 IAPVIEGAVQHIASRRFEVGDE-----------LAYE-----------KTQ-KS---C-EIEQHTL-----PDG--QVIR  194 (325)
Q Consensus       149 v~pv~~G~~i~~~~~~~~~ge~-----------~~~~-----------~~~-~~---~-~~~~~~l-----pd~--~~i~  194 (325)
                      ++++.+|.++..  ...++|.+           ..|.           |.. ..   . ......+     ..+  ..+.
T Consensus       166 vs~v~~g~~~~~--~~~~lGG~~id~~l~~~l~~~~~~~~~~~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (335)
T PRK13930        166 VAVISLGGIVYS--ESIRVAGDEMDEAIVQYVRRKYNLLIGERTAEEIKIEIGSAYPLDEEESMEVRGRDLVTGLPKTIE  243 (335)
T ss_pred             EEEEEeCCEEee--cCcCchhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhcCcCCCCCceEEEECccCCCCCCeeEE
Confidence            999999998753  45677721           0010           000 00   0 0001111     111  1344


Q ss_pred             ecceeeccccccccCCCCCCcCCcHHHHHHHHHHhCChHHHHhcccc-EEEecCCCCccchHHHHHHhhccCCCCcceEE
Q 020526          195 IGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLEN-TVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTL  273 (325)
Q Consensus       195 l~~e~~~~~E~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~~n-Iil~GG~s~~~G~~~rl~~eL~~~~~~~~v~v  273 (325)
                      ++.+++  .|++|++.      .++.+.|.++|++|+++.++.++.| |+|+||+|++|||.+||++++     ..++++
T Consensus       244 i~~~~~--~e~i~~~~------~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~-----~~~v~~  310 (335)
T PRK13930        244 ISSEEV--REALAEPL------QQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEET-----GLPVHI  310 (335)
T ss_pred             ECHHHH--HHHHHHHH------HHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHH-----CCCcee
Confidence            444544  48888775      6899999999999999999999998 999999999999999999999     233444


Q ss_pred             eCCCCCCCCCCCceeeeehhhhhhc
Q 020526          274 VKPPEYMPENLTLYSAWIGGAILAK  298 (325)
Q Consensus       274 ~~~~~~~~~~~~~~~~W~G~si~a~  298 (325)
                      ...        |..+.=.|+++++.
T Consensus       311 ~~~--------p~~ava~Ga~~~~~  327 (335)
T PRK13930        311 AED--------PLTCVARGTGKALE  327 (335)
T ss_pred             cCC--------HHHHHHHHHHHHHh
Confidence            333        45677789988875

>PRK13927 rod shape-determining protein MreB; Provisional

Probab=99.97  E-value=1.1e-30  Score=241.37  Aligned_cols=266  Identities=18%  Similarity=0.249  Sum_probs=198.2

Q ss_pred             eEEEEcCCCcEEEeeeCCCCCCcEecccceeecCC---CcccccCcccccc-----Cce-eccccCCeecCHHHHHHHHH
Q 020526            3 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLE---DGSSSVDNSTLVE-----DVT-VDPVVRGFIRDWDAMEDLLH   73 (325)
Q Consensus         3 ~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~~---~~~~g~~~~~~~~-----~~~-~~p~~~g~i~d~~~~~~il~   73 (325)
                      .|+||+||.++|+|++ +++. ...+||+++...+   ..++| +++....     .++ .+|+++|.+.||+.++.+|+
T Consensus         7 ~igIDlGt~~~~i~~~-~~~~-~~~~ps~v~~~~~~~~~~~vG-~~a~~~~~~~~~~~~~~~pi~~G~i~d~~~~~~ll~   83 (334)
T PRK13927          7 DLGIDLGTANTLVYVK-GKGI-VLNEPSVVAIRTDTKKVLAVG-EEAKQMLGRTPGNIVAIRPMKDGVIADFDVTEKMLK   83 (334)
T ss_pred             eeEEEcCcceEEEEEC-CCcE-EEecCCEEEEECCCCeEEEec-HHHHHHhhcCCCCEEEEecCCCCeecCHHHHHHHHH
Confidence            4899999999999999 8765 6789999987543   24789 8875432     344 49999999999999999999


Q ss_pred             HHHHhccCCCCCCCc-eEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCC-----ceEEEEEcCCCce
Q 020526           74 HVLYAGLGWEEGNEG-QILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKI  147 (325)
Q Consensus        74 ~~~~~~l~~~~~~~~-~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVdiG~~~t  147 (325)
                      +++.+.+.. + .++ .++++.| .+....++++++.+||.++++.+.++++|++|++++|.     ++++|||+|++.|
T Consensus        84 ~~~~~~~~~-~-~~~~~~vi~vP-~~~~~~~r~~~~~a~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lvvDiGggtt  160 (334)
T PRK13927         84 YFIKKVHKN-F-RPSPRVVICVP-SGITEVERRAVRESALGAGAREVYLIEEPMAAAIGAGLPVTEPTGSMVVDIGGGTT  160 (334)
T ss_pred             HHHHHHhhc-c-CCCCcEEEEeC-CCCCHHHHHHHHHHHHHcCCCeeccCCChHHHHHHcCCcccCCCeEEEEEeCCCeE
Confidence            999887766 5 556 4566666 55666777888999999999999999999999999986     4679999999999


Q ss_pred             EEEEe-ecCeeccccceeecCcch-----------hch----h-------hhc-----ccCCcceEECC-----CCc--E
Q 020526          148 DIAPV-IEGAVQHIASRRFEVGDE-----------LAY----E-------KTQ-----KSCEIEQHTLP-----DGQ--V  192 (325)
Q Consensus       148 ~v~pv-~~G~~i~~~~~~~~~ge~-----------~~~----~-------~~~-----~~~~~~~~~lp-----d~~--~  192 (325)
                      +++++ .+|......   .++|.+           ..|    .       |..     .......+.+.     .+.  .
T Consensus       161 dvs~v~~~~~~~~~~---~~lGG~~id~~l~~~l~~~~~~~~~~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (334)
T PRK13927        161 EVAVISLGGIVYSKS---VRVGGDKFDEAIINYVRRNYNLLIGERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLPKT  237 (334)
T ss_pred             EEEEEecCCeEeeCC---cCChHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHHhhccCCCCCCceEEEeCcccCCCCCeE
Confidence            99999 677665543   356621           001    0       000     00000111111     111  3


Q ss_pred             EEecceeeccccccccCCCCCCcCCcHHHHHHHHHHhCChHHHHhcccc-EEEecCCCCccchHHHHHHhhccCCCCcce
Q 020526          193 IRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLEN-TVLCGGTTSMTGFEDRFQKEAGLCSSAIRP  271 (325)
Q Consensus       193 i~l~~e~~~~~E~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~~n-Iil~GG~s~~~G~~~rl~~eL~~~~~~~~v  271 (325)
                      +.++.+++  .|++|+|.      .++.+.|.++|++++.+.++.++++ |+|+||+|++|||.+||++++     ..++
T Consensus       238 ~~i~~~~~--~e~i~~~~------~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~-----~~~v  304 (334)
T PRK13927        238 ITISSNEI--REALQEPL------SAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEET-----GLPV  304 (334)
T ss_pred             EEECHHHH--HHHHHHHH------HHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHH-----CCCc
Confidence            44455555  37888775      6899999999999999999999985 999999999999999999999     3345


Q ss_pred             EEeCCCCCCCCCCCceeeeehhhhhhc
Q 020526          272 TLVKPPEYMPENLTLYSAWIGGAILAK  298 (325)
Q Consensus       272 ~v~~~~~~~~~~~~~~~~W~G~si~a~  298 (325)
                      ++..+        |..+.=.|+++++.
T Consensus       305 ~~~~~--------P~~ava~Ga~~~~~  323 (334)
T PRK13927        305 HVAED--------PLTCVARGTGKALE  323 (334)
T ss_pred             EecCC--------HHHHHHHHHHHHHh
Confidence            55444        44778889988875

>TIGR00904 mreB cell shape determining protein, MreB/Mrl family

Probab=99.96  E-value=2.2e-28  Score=225.92  Aligned_cols=265  Identities=20%  Similarity=0.241  Sum_probs=196.2

Q ss_pred             EEEEcCCCcEEEeeeCCCCCCcEecccceeecCC-----C--cccccCccccc-----cCce-eccccCCeecCHHHHHH
Q 020526            4 AVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLE-----D--GSSSVDNSTLV-----EDVT-VDPVVRGFIRDWDAMED   70 (325)
Q Consensus         4 vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~~-----~--~~~g~~~~~~~-----~~~~-~~p~~~g~i~d~~~~~~   70 (325)
                      |-||+||.++++-.. ++ .-....||+++...+     +  ..+| +++...     ..++ ++|+++|.|.||+.++.
T Consensus         5 ~giDlGt~~s~i~~~-~~-~~~~~~psvv~~~~~~~~~~~~~~~vG-~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~~~   81 (333)
T TIGR00904         5 IGIDLGTANTLVYVK-GR-GIVLNEPSVVAIRTDRDAKTKSILAVG-HEAKEMLGKTPGNIVAIRPMKDGVIADFEVTEK   81 (333)
T ss_pred             eEEecCcceEEEEEC-CC-CEEEecCCEEEEecCCCCCCCeEEEEh-HHHHHhhhcCCCCEEEEecCCCCEEEcHHHHHH
Confidence            789999999998554 33 334567888876533     2  5689 887554     2445 49999999999999999


Q ss_pred             HHHHHHHhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCC-----ceEEEEEcCCC
Q 020526           71 LLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHG  145 (325)
Q Consensus        71 il~~~~~~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVdiG~~  145 (325)
                      +|+|++.+.+........+++++.|...+...|+. ++.+||.++++.+.++++|++|++++|.     .+++|||+|++
T Consensus        82 ~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~-~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~g  160 (333)
T TIGR00904        82 MIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRA-VKESALSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGGG  160 (333)
T ss_pred             HHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHH-HHHHHHHcCCCeEEEecCHHHHHHhcCCcccCCceEEEEEcCCC
Confidence            99999987665433122369999999999988887 6668999999999999999999999987     67899999999


Q ss_pred             ceEEEEe-ecCeeccccceeecCcch-----------hchh-----------hh-ccc-----CCcc---------eEEC
Q 020526          146 KIDIAPV-IEGAVQHIASRRFEVGDE-----------LAYE-----------KT-QKS-----CEIE---------QHTL  187 (325)
Q Consensus       146 ~t~v~pv-~~G~~i~~~~~~~~~ge~-----------~~~~-----------~~-~~~-----~~~~---------~~~l  187 (325)
                      .|+++++ .+|..+...+   ++|.+           ..|.           |. ...     ....         .+.+
T Consensus       161 ttdvs~v~~~~~~~~~~~---~lGG~did~~l~~~l~~~~~~~~~~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~  237 (333)
T TIGR00904       161 TTEVAVISLGGIVVSRSI---RVGGDEFDEAIINYIRRTYNLLIGEQTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGL  237 (333)
T ss_pred             eEEEEEEEeCCEEecCCc---cchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHhccccccccccceeecCccccCCC
Confidence            9999999 7776655433   56621           0110           00 000     0000         1223


Q ss_pred             CCCcEEEecceeeccccccccCCCCCCcCCcHHHHHHHHHHhCChHHHHhccc-cEEEecCCCCccchHHHHHHhhccCC
Q 020526          188 PDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLE-NTVLCGGTTSMTGFEDRFQKEAGLCS  266 (325)
Q Consensus       188 pd~~~i~l~~e~~~~~E~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~~-nIil~GG~s~~~G~~~rl~~eL~~~~  266 (325)
                      |++.  .+..+  .+.|++|+|.      .++.+.|.+++++++++.+..+++ +|+|+||+|++|||.+||++++    
T Consensus       238 ~~~~--~i~~~--~~~e~i~~~~------~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~----  303 (333)
T TIGR00904       238 PRTI--EITSV--EVREALQEPV------NQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKET----  303 (333)
T ss_pred             CeEE--EECHH--HHHHHHHHHH------HHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHH----
Confidence            3332  33322  5678888885      689999999999999999999997 7999999999999999999999    


Q ss_pred             CCcceEEeCCCCCCCCCCCceeeeehhhhhhc
Q 020526          267 SAIRPTLVKPPEYMPENLTLYSAWIGGAILAK  298 (325)
Q Consensus       267 ~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~  298 (325)
                       ..++.+.  .+      |..++=.||++++.
T Consensus       304 -~~~v~~~--~~------P~~~va~Ga~~~~~  326 (333)
T TIGR00904       304 -GLPVIVA--DD------PLLCVAKGTGKALE  326 (333)
T ss_pred             -CCCceec--CC------hHHHHHHHHHHHHh
Confidence             2333433  33      55788889998865

A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.

>PRK13929 rod-share determining protein MreBH; Provisional

Probab=99.95  E-value=5.9e-27  Score=216.20  Aligned_cols=264  Identities=19%  Similarity=0.293  Sum_probs=192.2

Q ss_pred             ceEEEEcCCCcEEEeeeCCCCCCc-EecccceeecCCC---cccccCcccccc-----Cce-eccccCCeecCHHHHHHH
Q 020526            2 EAAVVDAGSKLLKAGPAIPDQAPS-MVIPSQMKRVLED---GSSSVDNSTLVE-----DVT-VDPVVRGFIRDWDAMEDL   71 (325)
Q Consensus         2 ~~vViD~Gs~~~k~G~a~gd~~P~-~~~ps~~~~~~~~---~~~g~~~~~~~~-----~~~-~~p~~~g~i~d~~~~~~i   71 (325)
                      +.|-||+||.++++ |. .. .+. ...||+++...++   .++| ++|....     .+. .+|+++|.|.|||..+.+
T Consensus         5 ~~~giDlGt~~~~i-~~-~~-~~~~~~~ps~va~~~~~~~~~~vG-~~A~~~~~~~p~~~~~~~pi~~G~I~d~d~~~~~   80 (335)
T PRK13929          5 TEIGIDLGTANILV-YS-KN-KGIILNEPSVVAVDTETKAVLAIG-TEAKNMIGKTPGKIVAVRPMKDGVIADYDMTTDL   80 (335)
T ss_pred             CeEEEEcccccEEE-EE-CC-CcEEecCCcEEEEECCCCeEEEeC-HHHHHhhhcCCCcEEEEecCCCCccCCHHHHHHH
Confidence            35789999999998 54 22 233 3468888765333   4789 8885542     333 499999999999999999


Q ss_pred             HHHHHHh---ccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcC-----CceEEEEEcC
Q 020526           72 LHHVLYA---GLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVG-----RISGCTVDIG  143 (325)
Q Consensus        72 l~~~~~~---~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g-----~~tglVVdiG  143 (325)
                      |++++.+   .++..+ ..++++++.|+..+..+|+.+.+ ++|.++++.+.++.+|+||++++|     ..+++|||+|
T Consensus        81 l~~~~~~~~~~l~~~~-~~~~vvitvP~~~~~~~R~~l~~-a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lvvDiG  158 (335)
T PRK13929         81 LKQIMKKAGKNIGMTF-RKPNVVVCTPSGSTAVERRAISD-AVKNCGAKNVHLIEEPVAAAIGADLPVDEPVANVVVDIG  158 (335)
T ss_pred             HHHHHHHHHHhcCCCC-CCCeEEEEcCCCCCHHHHHHHHH-HHHHcCCCeeEeecCHHHHHHhcCCCcCCCceEEEEEeC
Confidence            9999974   456555 56799999999999999999999 889999999999999999999997     4678999999


Q ss_pred             CCceEEEEeecCeeccccceeecCcch-----------hchh-----------h-hccc----CCcceEE-----CCCC-
Q 020526          144 HGKIDIAPVIEGAVQHIASRRFEVGDE-----------LAYE-----------K-TQKS----CEIEQHT-----LPDG-  190 (325)
Q Consensus       144 ~~~t~v~pv~~G~~i~~~~~~~~~ge~-----------~~~~-----------~-~~~~----~~~~~~~-----lpd~-  190 (325)
                      ++.|+++++..|..+..  ...++|.+           ..|.           | ....    .....+.     +..+ 
T Consensus       159 ~gtt~v~vi~~~~~~~~--~~~~~GG~~id~~l~~~l~~~~~~~~~~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~  236 (335)
T PRK13929        159 GGTTEVAIISFGGVVSC--HSIRIGGDQLDEDIVSFVRKKYNLLIGERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGL  236 (335)
T ss_pred             CCeEEEEEEEeCCEEEe--cCcCCHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHHHcCCCCCCCCceEEEeCCccCCCC
Confidence            99999999944433332  23456621           0110           0 0000    0001111     1111 


Q ss_pred             -cEEEecceeec--cccccccCCCCCCcCCcHHHHHHHHHHhCChHHHHhccc-cEEEecCCCCccchHHHHHHhhccCC
Q 020526          191 -QVIRIGKERYT--VGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLE-NTVLCGGTTSMTGFEDRFQKEAGLCS  266 (325)
Q Consensus       191 -~~i~l~~e~~~--~~E~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~~-nIil~GG~s~~~G~~~rl~~eL~~~~  266 (325)
                       ..+.++.+++.  +.|.+|          .+.+.|.++|++||++.+..+++ +|+||||+|++|||.+|+++++    
T Consensus       237 p~~i~i~~~~~~~~i~~~l~----------~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~----  302 (335)
T PRK13929        237 PKTITLESKEIQGAMRESLL----------HILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEI----  302 (335)
T ss_pred             CeEEEEcHHHHHHHHHHHHH----------HHHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHH----
Confidence             34555555554  456666          48999999999999999999998 6999999999999999999999    


Q ss_pred             CCcceEEeCCCCCCCCCCCceeeeehhhhh
Q 020526          267 SAIRPTLVKPPEYMPENLTLYSAWIGGAIL  296 (325)
Q Consensus       267 ~~~~v~v~~~~~~~~~~~~~~~~W~G~si~  296 (325)
                       ..++++...        |..+.=.|+..+
T Consensus       303 -~~~v~~~~~--------P~~~Va~Ga~~~  323 (335)
T PRK13929        303 -VVPVHVAAN--------PLESVAIGTGRS  323 (335)
T ss_pred             -CCCceeCCC--------HHHHHHHHHHHH
Confidence             234444333        456777777665

>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes

Probab=99.94  E-value=5.4e-26  Score=206.17  Aligned_cols=272  Identities=22%  Similarity=0.317  Sum_probs=189.3

Q ss_pred             ceEEEEcCCCcEEEeeeCCCCCCcEecccceeecCCC---cccccCcccccc-----Cce-eccccCCeecCHHHHHHHH
Q 020526            2 EAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLED---GSSSVDNSTLVE-----DVT-VDPVVRGFIRDWDAMEDLL   72 (325)
Q Consensus         2 ~~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~~~---~~~g~~~~~~~~-----~~~-~~p~~~g~i~d~~~~~~il   72 (325)
                      +-+-||+||.+|++ |. .+..=....||+++...+.   ..+| ++|..+.     +++ .+|+++|.|.|++..+.++
T Consensus         2 ~~igIDLGT~~t~i-~~-~~~Giv~~epSvVA~~~~~~~i~avG-~~A~~m~gktp~~i~~~~Pl~~GvI~D~~~~~~~l   78 (326)
T PF06723_consen    2 KDIGIDLGTSNTRI-YV-KGKGIVLNEPSVVAYDKDTGKILAVG-DEAKAMLGKTPDNIEVVRPLKDGVIADYEAAEEML   78 (326)
T ss_dssp             SEEEEEE-SSEEEE-EE-TTTEEEEEEES-EEEETTT--EEEES-HHHHTTTTS-GTTEEEE-SEETTEESSHHHHHHHH
T ss_pred             CceEEecCcccEEE-EE-CCCCEEEecCcEEEEECCCCeEEEEh-HHHHHHhhcCCCccEEEccccCCcccCHHHHHHHH
Confidence            45789999999999 55 3444556789999865443   3468 8875542     455 4999999999999999999


Q ss_pred             HHHHHhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCC-----ceEEEEEcCCCce
Q 020526           73 HHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKI  147 (325)
Q Consensus        73 ~~~~~~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVdiG~~~t  147 (325)
                      ++++++.++...+....++++.|.-.+..+|+.+.+.+. ..++.+|+++++|++|++++|.     ...+|||||+++|
T Consensus        79 ~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~~-~aGa~~V~li~ep~AaAiGaGl~i~~~~g~miVDIG~GtT  157 (326)
T PF06723_consen   79 RYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAAR-QAGARKVYLIEEPIAAAIGAGLDIFEPRGSMIVDIGGGTT  157 (326)
T ss_dssp             HHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHH-HTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE-SS-E
T ss_pred             HHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHHH-HcCCCEEEEecchHHHHhcCCCCCCCCCceEEEEECCCeE
Confidence            999998777544467789999999999999999999885 5899999999999999999984     3669999999999


Q ss_pred             EEEEeecCeeccccceeecCcch-----------hchh-----------h-h---------cccCCcceEECCCCcEEEe
Q 020526          148 DIAPVIEGAVQHIASRRFEVGDE-----------LAYE-----------K-T---------QKSCEIEQHTLPDGQVIRI  195 (325)
Q Consensus       148 ~v~pv~~G~~i~~~~~~~~~ge~-----------~~~~-----------~-~---------~~~~~~~~~~lpd~~~i~l  195 (325)
                      .+..+..|..+.+  ..+.+|..           ..|.           | .         ........-.+-+|....+
T Consensus       158 diavislggiv~s--~si~~gG~~~DeaI~~~ir~~y~l~Ig~~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~  235 (326)
T PF06723_consen  158 DIAVISLGGIVAS--RSIRIGGDDIDEAIIRYIREKYNLLIGERTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSI  235 (326)
T ss_dssp             EEEEEETTEEEEE--EEES-SHHHHHHHHHHHHHHHHSEE--HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEE
T ss_pred             EEEEEECCCEEEE--EEEEecCcchhHHHHHHHHHhhCcccCHHHHHHHHHhcceeeccCCCceEEEECccccCCCcEEE
Confidence            9999999988775  44566611           1110           0 0         0011122334455654443


Q ss_pred             cceeeccccccccCCCCCCcCCcHHHHHHHHHHhCChHHHHhcccc-EEEecCCCCccchHHHHHHhhccCCCCcceEEe
Q 020526          196 GKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLEN-TVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLV  274 (325)
Q Consensus       196 ~~e~~~~~E~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~~n-Iil~GG~s~~~G~~~rl~~eL~~~~~~~~v~v~  274 (325)
                      .-..-.+.|++-.+-      ..|.+.|.+++.++|+++..++++| |+||||+|+++||.++|++++     .+++++.
T Consensus       236 ~i~~~ev~~ai~~~~------~~I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~-----~~pV~va  304 (326)
T PF06723_consen  236 EITSSEVREAIEPPV------DQIVEAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEET-----GVPVRVA  304 (326)
T ss_dssp             EEEHHHHHHHHHHHH------HHHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHH-----SS-EEE-
T ss_pred             EEcHHHHHHHHHHHH------HHHHHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHH-----CCCEEEc
Confidence            222223333333332      5799999999999999999999987 999999999999999999999     5566666


Q ss_pred             CCCCCCCCCCCceeeeehhhhhhc
Q 020526          275 KPPEYMPENLTLYSAWIGGAILAK  298 (325)
Q Consensus       275 ~~~~~~~~~~~~~~~W~G~si~a~  298 (325)
                      ..|        .++.-.|+..+..
T Consensus       305 ~~P--------~~~va~G~~~~l~  320 (326)
T PF06723_consen  305 DDP--------LTAVARGAGKLLE  320 (326)
T ss_dssp             SST--------TTHHHHHHHHTTC
T ss_pred             CCH--------HHHHHHHHHHHHh
Confidence            554        4777788766543

In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.

>PRK13928 rod shape-determining protein Mbl; Provisional

Probab=99.92  E-value=2.2e-24  Score=199.39  Aligned_cols=268  Identities=18%  Similarity=0.273  Sum_probs=190.1

Q ss_pred             eEEEEcCCCcEEEeeeCCCCCCcEecccceeecCC--C-cccccCccccc-----cCce-eccccCCeecCHHHHHHHHH
Q 020526            3 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLE--D-GSSSVDNSTLV-----EDVT-VDPVVRGFIRDWDAMEDLLH   73 (325)
Q Consensus         3 ~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~~--~-~~~g~~~~~~~-----~~~~-~~p~~~g~i~d~~~~~~il~   73 (325)
                      -+-||+||.++++... ++ .-....||.+....+  . .++| +++..+     ..+. .+|+++|.|.||+..+.+|+
T Consensus         5 ~~gIDlGt~~~~i~~~-~~-~~v~~~psvv~~~~~~~~i~~vG-~~A~~~~~~~p~~~~~~~pi~~G~i~d~~~~~~~l~   81 (336)
T PRK13928          5 DIGIDLGTANVLVYVK-GK-GIVLNEPSVVAIDKNTNKVLAVG-EEARRMVGRTPGNIVAIRPLRDGVIADYDVTEKMLK   81 (336)
T ss_pred             eeEEEcccccEEEEEC-CC-CEEEccCCEEEEECCCCeEEEec-HHHHHhhhcCCCCEEEEccCCCCeEecHHHHHHHHH
Confidence            3789999999999555 33 344467888776533  2 3678 887544     2344 49999999999999999999


Q ss_pred             HHHHhccCCCCCCCce-EEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCC-----ceEEEEEcCCCce
Q 020526           74 HVLYAGLGWEEGNEGQ-ILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKI  147 (325)
Q Consensus        74 ~~~~~~l~~~~~~~~~-vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVdiG~~~t  147 (325)
                      |++.+...... ..+| ++++.|... ...+++.++.+++.++++.+.++++|++|++++|.     ..++|||+|+++|
T Consensus        82 ~~~~~~~~~~~-~~~p~~vitvP~~~-~~~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lVvDiGggtt  159 (336)
T PRK13928         82 YFINKACGKRF-FSKPRIMICIPTGI-TSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLDISQPSGNMVVDIGGGTT  159 (336)
T ss_pred             HHHHHHhccCC-CCCCeEEEEeCCCC-CHHHHHHHHHHHHHcCCCceEecccHHHHHHHcCCcccCCCeEEEEEeCCCeE
Confidence            99965322324 4566 788886654 45677777788899999999999999999999986     6789999999999


Q ss_pred             EEEEeecCeeccccceeecCcch-----------hchhh-----hc-------ccC----CcceEEC-----CCC--cEE
Q 020526          148 DIAPVIEGAVQHIASRRFEVGDE-----------LAYEK-----TQ-------KSC----EIEQHTL-----PDG--QVI  193 (325)
Q Consensus       148 ~v~pv~~G~~i~~~~~~~~~ge~-----------~~~~~-----~~-------~~~----~~~~~~l-----pd~--~~i  193 (325)
                      .++++..|..+...  .+++|.+           ..|..     ..       ...    .......     ..+  ..+
T Consensus       160 dvsvv~~g~~~~~~--~~~lGG~did~~i~~~l~~~~~~~~~~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~  237 (336)
T PRK13928        160 DIAVLSLGGIVTSS--SIKVAGDKFDEAIIRYIRKKYKLLIGERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPKTI  237 (336)
T ss_pred             EEEEEEeCCEEEeC--CcCCHHHHHHHHHHHHHHHHhchhcCHHHHHHHHHHhcccccccCCcEEEEecccccCCCceEE
Confidence            99999999776543  5567722           01100     00       000    0011111     011  122


Q ss_pred             EecceeeccccccccCCCCCCcCCcHHHHHHHHHHhCChHHHHhccc-cEEEecCCCCccchHHHHHHhhccCCCCcceE
Q 020526          194 RIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLE-NTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPT  272 (325)
Q Consensus       194 ~l~~e~~~~~E~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~~-nIil~GG~s~~~G~~~rl~~eL~~~~~~~~v~  272 (325)
                      .++.+++.  |+++.+-      ..+.+.|.+++.+++++++..++. +|+|+||+|++||+.++|++++     ..+++
T Consensus       238 ~i~~~~~~--eii~~~~------~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~-----~~~v~  304 (336)
T PRK13928        238 TVTSEEIR--EALKEPV------SAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEET-----KVPVY  304 (336)
T ss_pred             EECHHHHH--HHHHHHH------HHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHH-----CCCce
Confidence            33333332  5555543      578999999999999999989998 7999999999999999999999     23444


Q ss_pred             EeCCCCCCCCCCCceeeeehhhhhhc
Q 020526          273 LVKPPEYMPENLTLYSAWIGGAILAK  298 (325)
Q Consensus       273 v~~~~~~~~~~~~~~~~W~G~si~a~  298 (325)
                      +...        |..+.=.|+++++.
T Consensus       305 ~~~~--------P~~ava~Gaa~~~~  322 (336)
T PRK13928        305 IAED--------PISCVALGTGKMLE  322 (336)
T ss_pred             ecCC--------HHHHHHHHHHHHHh
Confidence            4333        55888899998865

>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]

Probab=99.85  E-value=1.4e-20  Score=165.46  Aligned_cols=270  Identities=19%  Similarity=0.262  Sum_probs=189.4

Q ss_pred             ceEEEEcCCCcEEEeeeCCCCCCcEecccceeecC--CC---cccccCccccc-----cCce-eccccCCeecCHHHHHH
Q 020526            2 EAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVL--ED---GSSSVDNSTLV-----EDVT-VDPVVRGFIRDWDAMED   70 (325)
Q Consensus         2 ~~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~--~~---~~~g~~~~~~~-----~~~~-~~p~~~g~i~d~~~~~~   70 (325)
                      +.|=||+|+.+|++ |. .+..-....||+++...  +.   ..+| ++|+.+     .++. ++||++|+|.|++..+.
T Consensus         7 ~diGIDLGTanTlV-~~-k~kgIVl~ePSVVAi~~~~~~~~v~aVG-~eAK~MlGrTP~ni~aiRPmkdGVIAd~~~te~   83 (342)
T COG1077           7 NDIGIDLGTANTLV-YV-KGKGIVLNEPSVVAIESEGKTKVVLAVG-EEAKQMLGRTPGNIVAIRPMKDGVIADFEVTEL   83 (342)
T ss_pred             ccceeeecccceEE-EE-cCceEEecCceEEEEeecCCCceEEEeh-HHHHHHhccCCCCceEEeecCCcEeecHHHHHH
Confidence            45789999999999 55 33344456788887654  22   4578 888654     2554 69999999999999999


Q ss_pred             HHHHHHHhccCCCC-CCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCC-----ceEEEEEcCC
Q 020526           71 LLHHVLYAGLGWEE-GNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGH  144 (325)
Q Consensus        71 il~~~~~~~l~~~~-~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVdiG~  144 (325)
                      ++.|..++..+-.. .....++++.|.-.+..+|+.+-+.+ ++.+...|+++++|.+|++++|.     +-..|||||+
T Consensus        84 ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~-~~aGa~~V~lieEp~aAAIGaglpi~ep~G~mvvDIGg  162 (342)
T COG1077          84 MLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAA-ESAGAREVYLIEEPMAAAIGAGLPIMEPTGSMVVDIGG  162 (342)
T ss_pred             HHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHHH-HhccCceEEEeccHHHHHhcCCCcccCCCCCEEEEeCC
Confidence            99998876543232 24556899999999999999888877 55788999999999999999984     3479999999


Q ss_pred             CceEEEEeecCeeccccceeecCc---ch-hchhhh----------cccCC-cceEECC-----------------CC--
Q 020526          145 GKIDIAPVIEGAVQHIASRRFEVG---DE-LAYEKT----------QKSCE-IEQHTLP-----------------DG--  190 (325)
Q Consensus       145 ~~t~v~pv~~G~~i~~~~~~~~~g---e~-~~~~~~----------~~~~~-~~~~~lp-----------------d~--  190 (325)
                      ++|.|..|..|-.+.....+....   |. ..|-+.          .+... ...+..|                 .|  
T Consensus       163 GTTevaVISlggiv~~~Sirv~GD~~De~Ii~yvr~~~nl~IGe~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlP  242 (342)
T COG1077         163 GTTEVAVISLGGIVSSSSVRVGGDKMDEAIIVYVRKKYNLLIGERTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLP  242 (342)
T ss_pred             CceeEEEEEecCEEEEeeEEEecchhhHHHHHHHHHHhCeeecHHHHHHHHHHhcccccccCCccceeeEEeeecccCCC
Confidence            999999998887777666555443   11 122110          00000 0111111                 11  


Q ss_pred             cEEEecceeeccccccccCCCCCCcCCcHHHHHHHHHHhCChHHHHhcccc-EEEecCCCCccchHHHHHHhhccCCCCc
Q 020526          191 QVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLEN-TVLCGGTTSMTGFEDRFQKEAGLCSSAI  269 (325)
Q Consensus       191 ~~i~l~~e~~~~~E~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~~n-Iil~GG~s~~~G~~~rl~~eL~~~~~~~  269 (325)
                      +++.++.+  .+.|+|-.+-      ..|.+.|...+.+||+++-.+.+++ |+++||+|++.||.+.+.+|.     ..
T Consensus       243 k~i~i~s~--ev~eal~~~v------~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et-----~~  309 (342)
T COG1077         243 KTITINSE--EIAEALEEPL------NGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEET-----GV  309 (342)
T ss_pred             eeEEEcHH--HHHHHHHHHH------HHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhcc-----CC
Confidence            12222221  2334444443      5799999999999999999999999 999999999999999999998     33


Q ss_pred             ceEEeCCCCCCCCCCCceeeeehhhhh
Q 020526          270 RPTLVKPPEYMPENLTLYSAWIGGAIL  296 (325)
Q Consensus       270 ~v~v~~~~~~~~~~~~~~~~W~G~si~  296 (325)
                      ++.+...        |...+-.|+...
T Consensus       310 pv~ia~~--------pL~~Va~G~G~~  328 (342)
T COG1077         310 PVIIADD--------PLTCVAKGTGKA  328 (342)
T ss_pred             eEEECCC--------hHHHHHhccchh
Confidence            4444333        445555565444

>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein

Probab=99.65  E-value=2.7e-15  Score=131.86  Aligned_cols=201  Identities=18%  Similarity=0.271  Sum_probs=133.7

Q ss_pred             eccccCCeecCHHHHHHHHHHHHHh---ccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhh
Q 020526           54 VDPVVRGFIRDWDAMEDLLHHVLYA---GLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLY  130 (325)
Q Consensus        54 ~~p~~~g~i~d~~~~~~il~~~~~~---~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~  130 (325)
                      ..|+++|.|.|++..+.+++++...   .++  . +-..++++.|...+..+|+.+.+.+ +..++..+.++.+++++++
T Consensus        28 ~~~~~~g~I~d~~~~~~~l~~l~~~a~~~~g--~-~~~~vvisVP~~~~~~~r~a~~~a~-~~aGl~~~~li~ep~Aaa~  103 (239)
T TIGR02529        28 ADVVRDGIVVDFLGAVEIVRRLKDTLEQKLG--I-ELTHAATAIPPGTIEGDPKVIVNVI-ESAGIEVLHVLDEPTAAAA  103 (239)
T ss_pred             cccccCCeEEEhHHHHHHHHHHHHHHHHHhC--C-CcCcEEEEECCCCCcccHHHHHHHH-HHcCCceEEEeehHHHHHH
Confidence            3699999999999999999999853   232  2 3468999999988888888766554 6689999999999999999


Q ss_pred             hcCCceEEEEEcCCCceEEEEeecCeeccccceeecCcch-hch--hhh----cccCCcceEECCCCcEEEecceeeccc
Q 020526          131 AVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGDE-LAY--EKT----QKSCEIEQHTLPDGQVIRIGKERYTVG  203 (325)
Q Consensus       131 ~~g~~tglVVdiG~~~t~v~pv~~G~~i~~~~~~~~~ge~-~~~--~~~----~~~~~~~~~~lpd~~~i~l~~e~~~~~  203 (325)
                      +++....+|||+|++.|.++-+.+|.++..  ...++|.+ .+.  .+.    ....+  ..+...+.    ..+.+.+.
T Consensus       104 ~~~~~~~~vvDiGggtt~i~i~~~G~i~~~--~~~~~GG~~it~~Ia~~~~i~~~~AE--~~K~~~~~----~~~~~~~i  175 (239)
T TIGR02529       104 VLQIKNGAVVDVGGGTTGISILKKGKVIYS--ADEPTGGTHMSLVLAGAYGISFEEAE--EYKRGHKD----EEEIFPVV  175 (239)
T ss_pred             HhcCCCcEEEEeCCCcEEEEEEECCeEEEE--EeeecchHHHHHHHHHHhCCCHHHHH--HHHHhcCC----HHHHHHHH
Confidence            988878899999999999999999987763  45556632 110  000    00000  00000000    01111111


Q ss_pred             cccccCCCCCCcCCcHHHHHHHHHHhCChHHHHhccccEEEecCCCCccchHHHHHHhhccCCCCcceEEeCCCCCCCCC
Q 020526          204 EALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPEN  283 (325)
Q Consensus       204 E~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL~~~~~~~~v~v~~~~~~~~~~  283 (325)
                      +.+.         ..+.+.|.+++.+.++       ..|+||||+|++||+.++|++.+     ..++++  +.+     
T Consensus       176 ~~~~---------~~i~~~i~~~l~~~~~-------~~v~LtGG~a~ipgl~e~l~~~l-----g~~v~~--~~~-----  227 (239)
T TIGR02529       176 KPVY---------QKMASIVKRHIEGQGV-------KDLYLVGGACSFSGFADVFEKQL-----GLNVIK--PQH-----  227 (239)
T ss_pred             HHHH---------HHHHHHHHHHHHhCCC-------CEEEEECchhcchhHHHHHHHHh-----CCCccc--CCC-----
Confidence            1111         2355555555554443       36999999999999999999999     223333  233     


Q ss_pred             CCceeeeehhhh
Q 020526          284 LTLYSAWIGGAI  295 (325)
Q Consensus       284 ~~~~~~W~G~si  295 (325)
                       |.+..=+|+.+
T Consensus       228 -P~~~va~Gaa~  238 (239)
T TIGR02529       228 -PLYVTPLGIAM  238 (239)
T ss_pred             -CCeehhheeec
Confidence             56777777653

>PRK15080 ethanolamine utilization protein EutJ; Provisional

Probab=99.55  E-value=1.5e-13  Score=122.94  Aligned_cols=227  Identities=19%  Similarity=0.262  Sum_probs=147.1

Q ss_pred             EEEEcCCCcEEEeeeCCCCCCcEecccceeecCCCcccccCccccccCceeccccCCeecCHHHHHHHHHHHHHh---cc
Q 020526            4 AVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTVDPVVRGFIRDWDAMEDLLHHVLYA---GL   80 (325)
Q Consensus         4 vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~~~~~~g~~~~~~~~~~~~~p~~~g~i~d~~~~~~il~~~~~~---~l   80 (325)
                      ++||+||.++|+=.+  +..+..     ++       ++ +.       ...+++.|.+.|++.....++++...   .+
T Consensus        27 ~~iDiGSssi~~vv~--~~~~~~-----~~-------~~-~~-------~~~~vr~G~i~di~~a~~~i~~~~~~ae~~~   84 (267)
T PRK15080         27 VGVDLGTANIVLAVL--DEDGQP-----VA-------GA-LE-------WADVVRDGIVVDFIGAVTIVRRLKATLEEKL   84 (267)
T ss_pred             EEEEccCceEEEEEE--cCCCCE-----EE-------EE-ec-------cccccCCCEEeeHHHHHHHHHHHHHHHHHHh
Confidence            789999999997555  323321     11       11 11       13689999999999999999988753   23


Q ss_pred             CCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCCceEEEEEcCCCceEEEEeecCeeccc
Q 020526           81 GWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHI  160 (325)
Q Consensus        81 ~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVdiG~~~t~v~pv~~G~~i~~  160 (325)
                      +..   -..++++.|...+..+|..+. -+.+..++.-..++.++.+++.+.+...++|||+|+++|.++-+.+|.++..
T Consensus        85 g~~---i~~v~~~vp~~~~~~~~~~~~-~~~~~aGl~~~~ii~e~~A~a~~~~~~~~~vvDIGggtt~i~v~~~g~~~~~  160 (267)
T PRK15080         85 GRE---LTHAATAIPPGTSEGDPRAII-NVVESAGLEVTHVLDEPTAAAAVLGIDNGAVVDIGGGTTGISILKDGKVVYS  160 (267)
T ss_pred             CCC---cCeEEEEeCCCCCchhHHHHH-HHHHHcCCceEEEechHHHHHHHhCCCCcEEEEeCCCcEEEEEEECCeEEEE
Confidence            333   246677888877777777766 6668899999999999999999888777899999999999999999987765


Q ss_pred             cceeecCcch-h----------chhhhcccCCcceEECCCCcEEEecceeeccccccccCCCCCCcCCcHHHHHHHHHHh
Q 020526          161 ASRRFEVGDE-L----------AYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTIST  229 (325)
Q Consensus       161 ~~~~~~~ge~-~----------~~~~~~~~~~~~~~~lpd~~~i~l~~e~~~~~E~lF~p~~~~~~~~~i~~~I~~~i~~  229 (325)
                        ...++|.+ .          +++..+ .. +..+  ..      .++...+.+.++         ..+.+.|.+.++.
T Consensus       161 --~~~~~GG~~it~~Ia~~l~i~~~eAE-~l-K~~~--~~------~~~~~~ii~~~~---------~~i~~~i~~~l~~  219 (267)
T PRK15080        161 --ADEPTGGTHMSLVLAGAYGISFEEAE-QY-KRDP--KH------HKEIFPVVKPVV---------EKMASIVARHIEG  219 (267)
T ss_pred             --ecccCchHHHHHHHHHHhCCCHHHHH-HH-Hhcc--CC------HHHHHHHHHHHH---------HHHHHHHHHHHhc
Confidence              35567732 1          111100 00 0000  00      000001111111         2233444444443


Q ss_pred             CChHHHHhccccEEEecCCCCccchHHHHHHhhccCCCCcceEEeCCCCCCCCCCCceeeeehhhhhh
Q 020526          230 VSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILA  297 (325)
Q Consensus       230 ~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a  297 (325)
                      .       -...|+||||+|++||+.+.+++.+     ..++++  +++      |.+.+=+|+.+|+
T Consensus       220 ~-------~~~~IvLtGG~s~lpgl~e~l~~~l-----g~~v~~--~~~------P~~~~a~Gaa~~~  267 (267)
T PRK15080        220 Q-------DVEDIYLVGGTCCLPGFEEVFEKQT-----GLPVHK--PQH------PLFVTPLGIALSC  267 (267)
T ss_pred             C-------CCCEEEEECCcccchhHHHHHHHHh-----CCCccc--CCC------chHHHHHHHHhhC
Confidence            2       3457999999999999999999999     223333  333      6688888887763

>CHL00094 dnaK heat shock protein 70

Probab=99.19  E-value=5.8e-10  Score=111.24  Aligned_cols=148  Identities=14%  Similarity=0.076  Sum_probs=96.5

Q ss_pred             ceEEEEcCCCcEEEeeeCCCCCCcE--------ecccceeecC-CCcccccCccccc-------------c----Cc---
Q 020526            2 EAAVVDAGSKLLKAGPAIPDQAPSM--------VIPSQMKRVL-EDGSSSVDNSTLV-------------E----DV---   52 (325)
Q Consensus         2 ~~vViD~Gs~~~k~G~a~gd~~P~~--------~~ps~~~~~~-~~~~~g~~~~~~~-------------~----~~---   52 (325)
                      ..|-||+||.++++++. .+..|..        ..||+++-.. ++..+| +.|...             +    .+   
T Consensus         3 ~viGIDlGTt~s~va~~-~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG-~~A~~~~~~~p~~ti~~~KrliG~~~~~~   80 (621)
T CHL00094          3 KVVGIDLGTTNSVVAVM-EGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVG-QIAKRQAVINPENTFYSVKRFIGRKFSEI   80 (621)
T ss_pred             ceEEEEeCcccEEEEEE-ECCEEEEEECCCCCcccceEEEEcCCCCEEEC-HHHHHhHHhCccceehhhHHhcCCChHHH
Confidence            46789999999999998 5555653        3455554322 234555 433210             0    00   


Q ss_pred             ----eecccc---------------CC-eecCHHHHHHHHHHHHHh---ccCCCCCCCceEEEEcCCCCCHHHHHHHHHH
Q 020526           53 ----TVDPVV---------------RG-FIRDWDAMEDLLHHVLYA---GLGWEEGNEGQILFTDPLCSPKAVREQLVQL  109 (325)
Q Consensus        53 ----~~~p~~---------------~g-~i~d~~~~~~il~~~~~~---~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~  109 (325)
                          ..+|+.               .| .+...+....+++++...   .++..   -..++++.|...+..+|+.+.+.
T Consensus        81 ~~~~~~~~~~v~~~~~g~i~~~~~~~~~~~s~eei~a~iL~~l~~~ae~~lg~~---v~~~VItVPa~f~~~qR~a~~~A  157 (621)
T CHL00094         81 SEEAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQVLRKLVEDASKYLGET---VTQAVITVPAYFNDSQRQATKDA  157 (621)
T ss_pred             HhhhhcCCeEEEECCCCCEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCC---CCeEEEEECCCCCHHHHHHHHHH
Confidence                011221               11 223344455566555432   23322   35789999999998888887766


Q ss_pred             hhhhcCCCeEEEechhhhhhhhcCC-----ceEEEEEcCCCceEEEEeecC
Q 020526          110 MFETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVIEG  155 (325)
Q Consensus       110 lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVdiG~~~t~v~pv~~G  155 (325)
                      + +..|+.-+.++++|.||++++|.     .+-+|+|+|++++.|+.+..+
T Consensus       158 a-~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~  207 (621)
T CHL00094        158 G-KIAGLEVLRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSILEVG  207 (621)
T ss_pred             H-HHcCCceEEEeccHHHHHHHhccccCCCCEEEEEEcCCCeEEEEEEEEc
Confidence            5 77899999999999999999874     467999999999999887544

>PRK00290 dnaK molecular chaperone DnaK; Provisional

Probab=99.19  E-value=4.3e-10  Score=112.39  Aligned_cols=66  Identities=15%  Similarity=0.108  Sum_probs=56.5

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCC-----ceEEEEEcCCCceEEEEeec
Q 020526           88 GQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVIE  154 (325)
Q Consensus        88 ~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVdiG~~~t~v~pv~~  154 (325)
                      ..++++.|...+..+|+.+.+.+ +..|++-+.++++|.||++++|.     .+-+|+|+|++++.++.+.-
T Consensus       134 ~~~VItVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~  204 (627)
T PRK00290        134 TEAVITVPAYFNDAQRQATKDAG-KIAGLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEI  204 (627)
T ss_pred             ceEEEEECCCCCHHHHHHHHHHH-HHcCCceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEE
Confidence            57899999999999888876554 77899999999999999998863     56899999999999877643

>PTZ00186 heat shock 70 kDa precursor protein; Provisional

Probab=99.15  E-value=1.6e-09  Score=108.05  Aligned_cols=68  Identities=18%  Similarity=0.157  Sum_probs=57.5

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCC-----ceEEEEEcCCCceEEEEee--cCe
Q 020526           88 GQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVI--EGA  156 (325)
Q Consensus        88 ~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVdiG~~~t~v~pv~--~G~  156 (325)
                      ..+|++.|...+..+|+.+.+.+ +..|+.-+.++++|.||++++|.     .+-+|+|+|++++.|+-+.  +|.
T Consensus       161 ~~aVITVPayF~~~qR~at~~Aa-~~AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~  235 (657)
T PTZ00186        161 SNAVVTCPAYFNDAQRQATKDAG-TIAGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGV  235 (657)
T ss_pred             ceEEEEECCCCChHHHHHHHHHH-HHcCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCE
Confidence            57899999999998888876644 77899999999999999999874     4679999999999998764  553

>TIGR01991 HscA Fe-S protein assembly chaperone HscA

Probab=99.15  E-value=7.2e-10  Score=109.99  Aligned_cols=268  Identities=16%  Similarity=0.216  Sum_probs=150.9

Q ss_pred             eEEEEcCCCcEEEeeeCCCCCCcE--------ecccceeecCC-CcccccCccccc-------------c----Cc----
Q 020526            3 AAVVDAGSKLLKAGPAIPDQAPSM--------VIPSQMKRVLE-DGSSSVDNSTLV-------------E----DV----   52 (325)
Q Consensus         3 ~vViD~Gs~~~k~G~a~gd~~P~~--------~~ps~~~~~~~-~~~~g~~~~~~~-------------~----~~----   52 (325)
                      +|-||+||.++.+++. .+..|..        .+||+++-..+ ...+| ..|...             +    .+    
T Consensus         1 ~iGIDlGTtns~va~~-~~g~~~ii~n~~g~~~~PS~V~f~~~~~~~vG-~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~   78 (599)
T TIGR01991         1 AVGIDLGTTNSLVASV-RSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVG-KEALAAAAEDPKNTISSVKRLMGRSIEDIK   78 (599)
T ss_pred             CEEEEEccccEEEEEE-ECCEEEEEECCCCCcccCeEEEEeCCCCEEec-HHHHHhhhhChhhhHHHHHHHhCCCccchh
Confidence            4679999999999987 5544543        35777754323 45666 544211             0    00    


Q ss_pred             --eecccc--------------CCeecCHHHHHHHHHHHHH---hccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhh
Q 020526           53 --TVDPVV--------------RGFIRDWDAMEDLLHHVLY---AGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFET  113 (325)
Q Consensus        53 --~~~p~~--------------~g~i~d~~~~~~il~~~~~---~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~  113 (325)
                        ..+|+.              .|.+.-.+....+++++..   ..++..   -..++++.|...+..+|+.+.+.+ +.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ei~a~iL~~lk~~a~~~lg~~---v~~~VItVPa~f~~~qR~a~~~Aa-~~  154 (599)
T TIGR01991        79 TFSILPYRFVDGPGEMVRLRTVQGTVTPVEVSAEILKKLKQRAEESLGGD---LVGAVITVPAYFDDAQRQATKDAA-RL  154 (599)
T ss_pred             hcccCCEEEEEcCCCceEEEeCCCEEcHHHHHHHHHHHHHHHHHHHhCCC---cceEEEEECCCCCHHHHHHHHHHH-HH
Confidence              011221              2223333444455555432   234333   367999999999999998877664 78


Q ss_pred             cCCCeEEEechhhhhhhhcCC-----ceEEEEEcCCCceEEEEee--cCee-ccccceeecCcch------hch-----h
Q 020526          114 FNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVI--EGAV-QHIASRRFEVGDE------LAY-----E  174 (325)
Q Consensus       114 ~~~~~v~~~~~~~~a~~~~g~-----~tglVVdiG~~~t~v~pv~--~G~~-i~~~~~~~~~ge~------~~~-----~  174 (325)
                      .|+.-+.++++|.||+++++.     .+-+|+|+|++++.|+.+.  +|.. +........+|..      .+|     .
T Consensus       155 AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l~~~~~  234 (599)
T TIGR01991       155 AGLNVLRLLNEPTAAAVAYGLDKASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILKQLG  234 (599)
T ss_pred             cCCCceEEecCHHHHHHHHhhccCCCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHHHHhhC
Confidence            999999999999999998763     4579999999999998764  3321 1111122344411      000     0


Q ss_pred             --------------------hhc-ccCCcceEECC-CCcE--EEecceeeccccccccCCCCCCcCCcHHHHHHHHHHhC
Q 020526          175 --------------------KTQ-KSCEIEQHTLP-DGQV--IRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTV  230 (325)
Q Consensus       175 --------------------~~~-~~~~~~~~~lp-d~~~--i~l~~e~~~~~E~lF~p~~~~~~~~~i~~~I~~~i~~~  230 (325)
                                          |.. .......+.++ +|..  +.+..+.|   |-++.|-     ...+.+.|.+++...
T Consensus       235 ~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~g~~~~~~itr~ef---e~l~~~l-----l~~i~~~i~~~L~~a  306 (599)
T TIGR01991       235 ISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTLDGKDFKGKLTRDEF---EALIQPL-----VQKTLSICRRALRDA  306 (599)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEECCcEEEEEEeHHHH---HHHHHHH-----HHHHHHHHHHHHHHc
Confidence                                000 00011111111 1221  12221111   2222221     033555556666554


Q ss_pred             ChHHHHhccccEEEecCCCCccchHHHHHHhhccCCCCcceEEeCCCCCCCCCCCceeeeehhhhhhcc
Q 020526          231 SSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKV  299 (325)
Q Consensus       231 ~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~l  299 (325)
                      ..  ...-...|+|+||+|++|++.+++.+.+..       .+....+      |..+.=.||+++|..
T Consensus       307 ~~--~~~~id~ViLvGGssriP~V~~~l~~~f~~-------~~~~~~n------pdeaVA~GAai~a~~  360 (599)
T TIGR01991       307 GL--SVEEIKGVVLVGGSTRMPLVRRAVAELFGQ-------EPLTDID------PDQVVALGAAIQADL  360 (599)
T ss_pred             CC--ChhhCCEEEEECCcCCChHHHHHHHHHhCC-------CCCCCCC------CcHHHHHHHHHHHHH
Confidence            22  222357799999999999999999977721       1112223      567788899888864

The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.

>PTZ00400 DnaK-type molecular chaperone; Provisional

Probab=99.14  E-value=2.6e-09  Score=107.13  Aligned_cols=66  Identities=17%  Similarity=0.136  Sum_probs=57.1

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCC-----ceEEEEEcCCCceEEEEee
Q 020526           87 EGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVI  153 (325)
Q Consensus        87 ~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVdiG~~~t~v~pv~  153 (325)
                      -..++++.|...+..+|+.+.+. .+..|++-+.++++|.||++++|.     .+-+|+|+|++++.|+.+.
T Consensus       174 v~~~VITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~  244 (663)
T PTZ00400        174 VKQAVITVPAYFNDSQRQATKDA-GKIAGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILE  244 (663)
T ss_pred             CceEEEEECCCCCHHHHHHHHHH-HHHcCCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEE
Confidence            36799999999999998888664 477899999999999999999874     3679999999999998764

>TIGR02350 prok_dnaK chaperone protein DnaK

Probab=99.13  E-value=1e-09  Score=109.14  Aligned_cols=145  Identities=14%  Similarity=0.072  Sum_probs=93.2

Q ss_pred             eEEEEcCCCcEEEeeeCCCCCCcE--------ecccceeecCC-CcccccCcccccc-----------------Cc----
Q 020526            3 AAVVDAGSKLLKAGPAIPDQAPSM--------VIPSQMKRVLE-DGSSSVDNSTLVE-----------------DV----   52 (325)
Q Consensus         3 ~vViD~Gs~~~k~G~a~gd~~P~~--------~~ps~~~~~~~-~~~~g~~~~~~~~-----------------~~----   52 (325)
                      .|=||+||.++++++. .+..|..        .+||+++-..+ +..+| +.|....                 .+    
T Consensus         2 viGIDlGtt~s~va~~-~~g~~~ii~n~~~~~~~PS~V~~~~~~~~~vG-~~A~~~~~~~p~~~i~~~Kr~iG~~~~~~~   79 (595)
T TIGR02350         2 IIGIDLGTTNSCVAVM-EGGEPVVIPNAEGARTTPSVVAFTKNGERLVG-QPAKRQAVTNPENTIYSIKRFMGRRFDEVT   79 (595)
T ss_pred             EEEEEeCcccEEEEEE-ECCEEEEEECCCCCcccCeEEEEeCCCCEEEC-HHHHHhhhhCchhhhHHHHHHhCCCchHHH
Confidence            5779999999999998 5555552        34666654322 45666 5442110                 00    


Q ss_pred             ---eecccc------------CCeecCHH-HHHHHHHHHHH---hccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhh
Q 020526           53 ---TVDPVV------------RGFIRDWD-AMEDLLHHVLY---AGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFET  113 (325)
Q Consensus        53 ---~~~p~~------------~g~i~d~~-~~~~il~~~~~---~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~  113 (325)
                         ..+|..            +|.....+ ....+++++..   ..++..   -..++++.|...+..+|+.+.+. .+.
T Consensus        80 ~~~~~~~~~v~~~~~~~~~~v~~~~~~peel~a~~L~~l~~~a~~~~~~~---v~~~VItVPa~f~~~qR~a~~~A-a~~  155 (595)
T TIGR02350        80 EEAKRVPYKVVGDGGDVRVKVDGKEYTPQEISAMILQKLKKDAEAYLGEK---VTEAVITVPAYFNDAQRQATKDA-GKI  155 (595)
T ss_pred             HHhhcCCeeEEcCCCceEEEECCEEecHHHHHHHHHHHHHHHHHHHhCCC---CCeEEEEECCCCCHHHHHHHHHH-HHH
Confidence               011211            12222222 23344444322   233322   35789999999999998888764 477


Q ss_pred             cCCCeEEEechhhhhhhhcCC------ceEEEEEcCCCceEEEEee
Q 020526          114 FNISGFYSSEQAVLSLYAVGR------ISGCTVDIGHGKIDIAPVI  153 (325)
Q Consensus       114 ~~~~~v~~~~~~~~a~~~~g~------~tglVVdiG~~~t~v~pv~  153 (325)
                      .|++-+.++++|.||++++|.      .+-+|+|+|++++.++.+.
T Consensus       156 AGl~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~  201 (595)
T TIGR02350       156 AGLEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILE  201 (595)
T ss_pred             cCCceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEE
Confidence            899999999999999998763      4569999999999987764

Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.

>PRK05183 hscA chaperone protein HscA; Provisional

Probab=99.11  E-value=1.8e-09  Score=107.45  Aligned_cols=145  Identities=14%  Similarity=0.135  Sum_probs=94.3

Q ss_pred             eEEEEcCCCcEEEeeeCCCCCCc--------EecccceeecCCCcccccCccccc-------------c----Cc-----
Q 020526            3 AAVVDAGSKLLKAGPAIPDQAPS--------MVIPSQMKRVLEDGSSSVDNSTLV-------------E----DV-----   52 (325)
Q Consensus         3 ~vViD~Gs~~~k~G~a~gd~~P~--------~~~ps~~~~~~~~~~~g~~~~~~~-------------~----~~-----   52 (325)
                      .|=||+||.++.+++. .+..|.        ..+||+++-..+...+| .+|...             +    .+     
T Consensus        21 ~iGIDlGTt~s~va~~-~~g~~~ii~n~~g~~~~PS~V~f~~~~~~vG-~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~   98 (616)
T PRK05183         21 AVGIDLGTTNSLVATV-RSGQAEVLPDEQGRVLLPSVVRYLEDGIEVG-YEARANAAQDPKNTISSVKRFMGRSLADIQQ   98 (616)
T ss_pred             EEEEEeccccEEEEEE-ECCEEEEEEcCCCCeecCeEEEEcCCCEEEc-HHHHHhhHhCchhhHHHHHHHhCCCchhhhh
Confidence            4779999999999987 454454        24566665433445566 444210             0    00     


Q ss_pred             --eeccc--------------cCCeecCHHHHHHHHHHHHH---hccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhh
Q 020526           53 --TVDPV--------------VRGFIRDWDAMEDLLHHVLY---AGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFET  113 (325)
Q Consensus        53 --~~~p~--------------~~g~i~d~~~~~~il~~~~~---~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~  113 (325)
                        ..+|.              ..|.+.-.+....+++++..   ..++.   .-..++++.|...+..+|+.+.+. .+.
T Consensus        99 ~~~~~~~~~~~~~~g~~~~~~~~~~~~p~ei~a~iL~~lk~~ae~~lg~---~v~~~VITVPa~f~~~qR~a~~~A-a~~  174 (616)
T PRK05183         99 RYPHLPYQFVASENGMPLIRTAQGLKSPVEVSAEILKALRQRAEETLGG---ELDGAVITVPAYFDDAQRQATKDA-ARL  174 (616)
T ss_pred             hhhcCCeEEEecCCCceEEEecCCeEcHHHHHHHHHHHHHHHHHHHhCC---CcceEEEEECCCCCHHHHHHHHHH-HHH
Confidence              01121              11222223344445555432   23332   236799999999999988877555 578


Q ss_pred             cCCCeEEEechhhhhhhhcCC-----ceEEEEEcCCCceEEEEee
Q 020526          114 FNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVI  153 (325)
Q Consensus       114 ~~~~~v~~~~~~~~a~~~~g~-----~tglVVdiG~~~t~v~pv~  153 (325)
                      .|++-+.++++|.||+++++.     .+-+|+|+|++++.|+.+.
T Consensus       175 AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~  219 (616)
T PRK05183        175 AGLNVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILR  219 (616)
T ss_pred             cCCCeEEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEE
Confidence            999999999999999998763     3568999999999988764

>PRK01433 hscA chaperone protein HscA; Provisional

Probab=99.10  E-value=4.1e-09  Score=104.27  Aligned_cols=265  Identities=15%  Similarity=0.136  Sum_probs=146.4

Q ss_pred             eEEEEcCCCcEEEeeeCCCCCCc--------EecccceeecCCCcccccCccc--c-cc----Cce--------------
Q 020526            3 AAVVDAGSKLLKAGPAIPDQAPS--------MVIPSQMKRVLEDGSSSVDNST--L-VE----DVT--------------   53 (325)
Q Consensus         3 ~vViD~Gs~~~k~G~a~gd~~P~--------~~~ps~~~~~~~~~~~g~~~~~--~-~~----~~~--------------   53 (325)
                      .|=||+|+.+..+++. .+..|.        ..+||+++-..+...+| +.+.  + ++    ++.              
T Consensus        21 viGIDlGTT~S~va~~-~~~~~~ii~n~~g~~~tPS~V~f~~~~~~vG-~~Ati~~~KrliG~~~~~~~~~~~~~~~~k~   98 (595)
T PRK01433         21 AVGIDFGTTNSLIAIA-TNRKVKVIKSIDDKELIPTTIDFTSNNFTIG-NNKGLRSIKRLFGKTLKEILNTPALFSLVKD   98 (595)
T ss_pred             EEEEEcCcccEEEEEE-eCCeeEEEECCCCCeecCeEEEEcCCCEEEC-chhhHHHHHHHhCCCchhhccchhhHhhhhh
Confidence            5779999999999998 554443        34566665433345566 4430  0 00    000              


Q ss_pred             -------ecccc-CCee-cCHHHHHHHHHHHHH---hccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEE
Q 020526           54 -------VDPVV-RGFI-RDWDAMEDLLHHVLY---AGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYS  121 (325)
Q Consensus        54 -------~~p~~-~g~i-~d~~~~~~il~~~~~---~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~  121 (325)
                             ..++. .|.. .-.+....+|.++-.   ..++.   .-..++++.|...+..+|+.+.+. .+..|+.-+.+
T Consensus        99 ~~~~~~~~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~---~v~~aVITVPa~f~~~qR~a~~~A-a~~AGl~v~~l  174 (595)
T PRK01433         99 YLDVNSSELKLNFANKQLRIPEIAAEIFIYLKNQAEEQLKT---NITKAVITVPAHFNDAARGEVMLA-AKIAGFEVLRL  174 (595)
T ss_pred             eeecCCCeeEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCC---CcceEEEEECCCCCHHHHHHHHHH-HHHcCCCEEEE
Confidence                   00111 1221 222334444544432   23332   236799999999999888887766 57789999999


Q ss_pred             echhhhhhhhcCC-----ceEEEEEcCCCceEEEEee--cCee-ccccceeecCcch-h-----chh--hhcc-------
Q 020526          122 SEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVI--EGAV-QHIASRRFEVGDE-L-----AYE--KTQK-------  178 (325)
Q Consensus       122 ~~~~~~a~~~~g~-----~tglVVdiG~~~t~v~pv~--~G~~-i~~~~~~~~~ge~-~-----~~~--~~~~-------  178 (325)
                      +++|.||++++|.     .+-+|+|+|++++.|+.+.  +|.. +........+|.+ .     +|-  +...       
T Consensus       175 i~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~  254 (595)
T PRK01433        175 IAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCNKFDLPNSIDTL  254 (595)
T ss_pred             ecCcHHHHHHHhcccCCCCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHHHHHHHHHhcCCCCCHHHH
Confidence            9999999999874     3568999999999987764  4421 1111112233311 1     110  0000       


Q ss_pred             -cCCcceEECCC-----CcEEEecceee-ccccccccCCCCCCcCCcHHHHHHHHHHhCChHHHHhccccEEEecCCCCc
Q 020526          179 -SCEIEQHTLPD-----GQVIRIGKERY-TVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSM  251 (325)
Q Consensus       179 -~~~~~~~~lpd-----~~~i~l~~e~~-~~~E~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~~  251 (325)
                       .++...-.|..     ...+.+..+.| .+.+.+|         ..+.+.|.+++....    ..=...|+|+||+|++
T Consensus       255 ~~~ekaK~~LS~~~~~~~~~~~itr~efe~l~~~l~---------~~~~~~i~~~L~~a~----~~~Id~ViLvGGssri  321 (595)
T PRK01433        255 QLAKKAKETLTYKDSFNNDNISINKQTLEQLILPLV---------ERTINIAQECLEQAG----NPNIDGVILVGGATRI  321 (595)
T ss_pred             HHHHHHHHhcCCCcccccceEEEcHHHHHHHHHHHH---------HHHHHHHHHHHhhcC----cccCcEEEEECCcccC
Confidence             00000000000     01233332222 1122222         234555555555543    1225779999999999


Q ss_pred             cchHHHHHHhhccCCCCcceEEeCCCCCCCCCCCceeeeehhhhhhcc
Q 020526          252 TGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKV  299 (325)
Q Consensus       252 ~G~~~rl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~l  299 (325)
                      |.+.+.+++.+.       ..+..+.+      |..++=.||+++|..
T Consensus       322 P~v~~~l~~~f~-------~~~~~~~n------pdeaVA~GAAi~a~~  356 (595)
T PRK01433        322 PLIKDELYKAFK-------VDILSDID------PDKAVVWGAALQAEN  356 (595)
T ss_pred             hhHHHHHHHHhC-------CCceecCC------chHHHHHHHHHHHHH
Confidence            999999997761       12222233      567788888888774

>PLN03184 chloroplast Hsp70; Provisional

Probab=99.10  E-value=2.3e-09  Score=107.59  Aligned_cols=145  Identities=12%  Similarity=0.061  Sum_probs=95.3

Q ss_pred             eEEEEcCCCcEEEeeeCCCCCCc--------EecccceeecC-CCcccccCccccc-------------c----Cc----
Q 020526            3 AAVVDAGSKLLKAGPAIPDQAPS--------MVIPSQMKRVL-EDGSSSVDNSTLV-------------E----DV----   52 (325)
Q Consensus         3 ~vViD~Gs~~~k~G~a~gd~~P~--------~~~ps~~~~~~-~~~~~g~~~~~~~-------------~----~~----   52 (325)
                      .|=||+|+.++++++. .+..|.        ..+||++.-.. ++..+| +.|...             +    .+    
T Consensus        41 viGIDlGTt~s~va~~-~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG-~~A~~~~~~~p~~ti~~~KrliG~~~~d~~  118 (673)
T PLN03184         41 VVGIDLGTTNSAVAAM-EGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVG-QIAKRQAVVNPENTFFSVKRFIGRKMSEVD  118 (673)
T ss_pred             EEEEEeCcCcEEEEEE-ECCeEEEEECCCCCeecceEEEEcCCCCEEEC-HHHHHhhhhCchhhhHHHHHhhCCCcchhh
Confidence            5779999999999998 555554        33466664322 234556 433210             0    00    


Q ss_pred             ---eeccc----------------cCCeecCHHHHHHHHHHHHHh---ccCCCCCCCceEEEEcCCCCCHHHHHHHHHHh
Q 020526           53 ---TVDPV----------------VRGFIRDWDAMEDLLHHVLYA---GLGWEEGNEGQILFTDPLCSPKAVREQLVQLM  110 (325)
Q Consensus        53 ---~~~p~----------------~~g~i~d~~~~~~il~~~~~~---~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~l  110 (325)
                         ..+|+                ....+.-.+....+|.++...   .++.   .-..++++.|...+..+|+.+.+. 
T Consensus       119 ~~~~~~~~~v~~~~~~~v~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~---~v~~~VITVPa~f~~~qR~a~~~A-  194 (673)
T PLN03184        119 EESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLND---KVTKAVITVPAYFNDSQRTATKDA-  194 (673)
T ss_pred             hhhhcCCeEEEecCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCC---CCCeEEEEECCCCCHHHHHHHHHH-
Confidence               00121                111223334455566665432   2332   236799999999999988887664 


Q ss_pred             hhhcCCCeEEEechhhhhhhhcCC-----ceEEEEEcCCCceEEEEee
Q 020526          111 FETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVI  153 (325)
Q Consensus       111 fe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVdiG~~~t~v~pv~  153 (325)
                      .+..|+..+.++++|.||++++|.     .+-+|+|+|++++.|+.+.
T Consensus       195 a~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~DvSi~~  242 (673)
T PLN03184        195 GRIAGLEVLRIINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLE  242 (673)
T ss_pred             HHHCCCCeEEEeCcHHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEE
Confidence            477899999999999999998864     4679999999999987764

>PRK13411 molecular chaperone DnaK; Provisional

Probab=99.09  E-value=2.5e-09  Score=107.18  Aligned_cols=65  Identities=17%  Similarity=0.121  Sum_probs=55.8

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCC------ceEEEEEcCCCceEEEEee
Q 020526           88 GQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR------ISGCTVDIGHGKIDIAPVI  153 (325)
Q Consensus        88 ~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------~tglVVdiG~~~t~v~pv~  153 (325)
                      ..++++.|...+..+|+.+.+. .+..|+.-+.++++|.||++++|.      .+-+|+|+|++++.|+.+.
T Consensus       134 ~~~VITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~  204 (653)
T PRK13411        134 TQAVITVPAYFTDAQRQATKDA-GTIAGLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQ  204 (653)
T ss_pred             ceEEEEECCCCCcHHHHHHHHH-HHHcCCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEE
Confidence            6799999999999999888764 577899999999999999998864      3469999999999987653

>PRK13410 molecular chaperone DnaK; Provisional

Probab=99.07  E-value=4.5e-09  Score=105.26  Aligned_cols=65  Identities=14%  Similarity=0.090  Sum_probs=56.5

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCC-----ceEEEEEcCCCceEEEEee
Q 020526           88 GQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVI  153 (325)
Q Consensus        88 ~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVdiG~~~t~v~pv~  153 (325)
                      ..++++.|...+..+|+.+.+.+ +..|+.-+.++++|.||++++|.     .+-+|+|+|++++.|+.+.
T Consensus       136 ~~~VITVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~  205 (668)
T PRK13410        136 TGAVITVPAYFNDSQRQATRDAG-RIAGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLE  205 (668)
T ss_pred             ceEEEEECCCCCHHHHHHHHHHH-HHcCCCeEEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEEE
Confidence            57999999999999998776655 78899999999999999999874     4679999999999988765

>PTZ00009 heat shock 70 kDa protein; Provisional

Probab=99.05  E-value=9.5e-09  Score=103.06  Aligned_cols=66  Identities=14%  Similarity=0.112  Sum_probs=56.2

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCC-------ceEEEEEcCCCceEEEEee
Q 020526           87 EGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR-------ISGCTVDIGHGKIDIAPVI  153 (325)
Q Consensus        87 ~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-------~tglVVdiG~~~t~v~pv~  153 (325)
                      -..++++.|...+..+|+.+.+ +.+..|++-+.++++|.||++++|.       .+-+|+|+|++++.|+.+.
T Consensus       140 v~~~VItVPa~f~~~qR~a~~~-Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~  212 (653)
T PTZ00009        140 VKDAVVTVPAYFNDSQRQATKD-AGTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLT  212 (653)
T ss_pred             cceeEEEeCCCCCHHHHHHHHH-HHHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEE
Confidence            3679999999999988887776 4578899999999999999998853       4679999999999987764

>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]

Probab=98.99  E-value=2e-09  Score=89.07  Aligned_cols=201  Identities=20%  Similarity=0.237  Sum_probs=122.6

Q ss_pred             EEEEcCCCcEEEeeeCCCCCCcEecccceeecCCCcccccCccccccCceeccccCCeecCHHHHHHHHHH---HHHhcc
Q 020526            4 AVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTVDPVVRGFIRDWDAMEDLLHH---VLYAGL   80 (325)
Q Consensus         4 vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~~~~~~g~~~~~~~~~~~~~p~~~g~i~d~~~~~~il~~---~~~~~l   80 (325)
                      +=+|+|++.+-+-.-+.+..|-...-              +-        -.-+++|.+.|+-..-.+.+.   .+.++|
T Consensus        32 vGVDLGT~~iV~~vlD~d~~Pvag~~--------------~~--------advVRDGiVvdf~eaveiVrrlkd~lEk~l   89 (277)
T COG4820          32 VGVDLGTCDIVSMVLDRDGQPVAGCL--------------DW--------ADVVRDGIVVDFFEAVEIVRRLKDTLEKQL   89 (277)
T ss_pred             EEeecccceEEEEEEcCCCCeEEEEe--------------hh--------hhhhccceEEehhhHHHHHHHHHHHHHHhh
Confidence            45788888877665545555643210              00        134567777776543333333   334566


Q ss_pred             CCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCCceEEEEEcCCCceEEEEeecCeeccc
Q 020526           81 GWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHI  160 (325)
Q Consensus        81 ~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVdiG~~~t~v~pv~~G~~i~~  160 (325)
                      ++..   ..---..||-..... .++.--+.|+.+...+..+++|.++++-.+.++|.|||+|.+.|-|.-+-+|.++..
T Consensus        90 Gi~~---tha~taiPPGt~~~~-~ri~iNViESAGlevl~vlDEPTAaa~vL~l~dg~VVDiGGGTTGIsi~kkGkViy~  165 (277)
T COG4820          90 GIRF---THAATAIPPGTEQGD-PRISINVIESAGLEVLHVLDEPTAAADVLQLDDGGVVDIGGGTTGISIVKKGKVIYS  165 (277)
T ss_pred             CeEe---eeccccCCCCccCCC-ceEEEEeecccCceeeeecCCchhHHHHhccCCCcEEEeCCCcceeEEEEcCcEEEe
Confidence            6543   111111122211101 111123458889999999999999999999999999999999999999999999987


Q ss_pred             cce-------eecCc--------chhchhhhcccCCcceEECCCCcEEEecceeeccccccccCCCCCCcCCcHHHHHHH
Q 020526          161 ASR-------RFEVG--------DELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVH  225 (325)
Q Consensus       161 ~~~-------~~~~g--------e~~~~~~~~~~~~~~~~~lpd~~~i~l~~e~~~~~E~lF~p~~~~~~~~~i~~~I~~  225 (325)
                      +..       .+.++        |.++|++....                +.|-|...-..+         ..+.+.+.+
T Consensus       166 ADEpTGGtHmtLvlAG~ygi~~EeAE~~Kr~~k~----------------~~Eif~~v~PV~---------eKMAeIv~~  220 (277)
T COG4820         166 ADEPTGGTHMTLVLAGNYGISLEEAEQYKRGHKK----------------GEEIFPVVKPVY---------EKMAEIVAR  220 (277)
T ss_pred             ccCCCCceeEEEEEecccCcCHhHHHHhhhcccc----------------chhcccchhHHH---------HHHHHHHHH
Confidence            631       11111        11222211100                112222222222         457788888


Q ss_pred             HHHhCChHHHHhccccEEEecCCCCccchHHHHHHhh
Q 020526          226 TISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA  262 (325)
Q Consensus       226 ~i~~~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL  262 (325)
                      .|..-++.       .+.|+||.++.||+.+-++++|
T Consensus       221 hie~~~i~-------dl~lvGGac~~~g~e~~Fe~~l  250 (277)
T COG4820         221 HIEGQGIT-------DLWLVGGACMQPGVEELFEKQL  250 (277)
T ss_pred             HhccCCCc-------ceEEecccccCccHHHHHHHHh
Confidence            88877653       3899999999999999999999

>TIGR01174 ftsA cell division protein FtsA

Probab=98.79  E-value=4.2e-07  Score=85.36  Aligned_cols=165  Identities=19%  Similarity=0.232  Sum_probs=92.5

Q ss_pred             CHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCC-----ceEEEEEcCCCceEEEEeecCeeccccceeecCcch---
Q 020526           99 PKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGDE---  170 (325)
Q Consensus        99 ~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVdiG~~~t~v~pv~~G~~i~~~~~~~~~ge~---  170 (325)
                      ++...+.+.+ +++..++.-+.+..+|+++++++..     ...+|||+|+++|.++.+.+|.+..  ...+++|.+   
T Consensus       156 ~~~~v~~~~~-~~~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~~--~~~i~~GG~~it  232 (371)
T TIGR01174       156 SSTILRNLVK-CVERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIRY--TKVIPIGGNHIT  232 (371)
T ss_pred             EHHHHHHHHH-HHHHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEEE--EeeecchHHHHH
Confidence            3444445544 4578899999999999999987642     3469999999999999999998765  355677732   


Q ss_pred             --------hchhhhcccCCc-ceEEC----CCCcEEEecc----eeeccccccccCCCCCCcCCcHHHHHH-HHHHhCCh
Q 020526          171 --------LAYEKTQKSCEI-EQHTL----PDGQVIRIGK----ERYTVGEALFQPSILGLEAHGIVEQLV-HTISTVSS  232 (325)
Q Consensus       171 --------~~~~~~~~~~~~-~~~~l----pd~~~i~l~~----e~~~~~E~lF~p~~~~~~~~~i~~~I~-~~i~~~~~  232 (325)
                              ..++..+ .... .....    +....+.+..    ....+....|..- +......+.+.|. +.+++.+.
T Consensus       233 ~~i~~~l~~~~~~AE-~lK~~~~~~~~~~~~~~~~i~~~~~~~~~~~~is~~~l~~i-i~~~~~ei~~~i~~~~L~~~~~  310 (371)
T TIGR01174       233 KDIAKALRTPLEEAE-RIKIKYGCASIPLEGPDENIEIPSVGERPPRSLSRKELAEI-IEARAEEILEIVKQKELRKSGF  310 (371)
T ss_pred             HHHHHHhCCCHHHHH-HHHHHeeEecccCCCCCCEEEeccCCCCCCeEEcHHHHHHH-HHHHHHHHHHHHHHHHHHhcCC
Confidence                    0111000 0000 00000    0111222210    0111111111000 0000134555554 66655544


Q ss_pred             HHHHhcccc-EEEecCCCCccchHHHHHHhhccCCCCcceEEeCC
Q 020526          233 ENHRQLLEN-TVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKP  276 (325)
Q Consensus       233 d~r~~l~~n-Iil~GG~s~~~G~~~rl~~eL~~~~~~~~v~v~~~  276 (325)
                      +  . -..+ |+||||+|++||+.+++.+.+     ..++++..|
T Consensus       311 ~--~-~i~~gIvLtGG~S~ipgi~~~l~~~~-----~~~vr~~~P  347 (371)
T TIGR01174       311 K--E-ELNGGIVLTGGGAQLEGIVELAEKVF-----DNPVRIGLP  347 (371)
T ss_pred             c--c-cCCCEEEEeChHHcccCHHHHHHHHh-----CCCeEEECC
Confidence            3  2 2345 999999999999999999998     334555543

This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.

>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins

Probab=98.78  E-value=5e-08  Score=97.37  Aligned_cols=186  Identities=18%  Similarity=0.267  Sum_probs=109.6

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCC------ceEEEEEcCCCceEEEEee--cCee-c
Q 020526           88 GQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR------ISGCTVDIGHGKIDIAPVI--EGAV-Q  158 (325)
Q Consensus        88 ~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------~tglVVdiG~~~t~v~pv~--~G~~-i  158 (325)
                      ..++++.|...+..+|+.+.+.+ +..|++.+.++++|.||+++++.      .+-+|+|+|++++.++.+.  +|.. +
T Consensus       136 ~~~vitVPa~~~~~qr~~~~~Aa-~~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v  214 (602)
T PF00012_consen  136 TDVVITVPAYFTDEQRQALRDAA-ELAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEV  214 (602)
T ss_dssp             EEEEEEE-TT--HHHHHHHHHHH-HHTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEE
T ss_pred             ccceeeechhhhhhhhhcccccc-cccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccc
Confidence            56899999999999888887666 67899999999999999987753      4679999999999888764  4432 1


Q ss_pred             cccceeecCcch-------------------hch-------h---------hh-ccc--CCcceEE----CCCCcE--EE
Q 020526          159 HIASRRFEVGDE-------------------LAY-------E---------KT-QKS--CEIEQHT----LPDGQV--IR  194 (325)
Q Consensus       159 ~~~~~~~~~ge~-------------------~~~-------~---------~~-~~~--~~~~~~~----lpd~~~--i~  194 (325)
                      ........+|.+                   .+.       .         |. ...  .....+.    ..++..  +.
T Consensus       215 ~~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~~~~~~~  294 (602)
T PF00012_consen  215 LATAGDNNLGGRDFDEALAEYLLEKFKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDDGEDFSIT  294 (602)
T ss_dssp             EEEEEETTCSHHHHHHHHHHHHHHHHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTTEEEEEE
T ss_pred             cccccccccccceecceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            122233455511                   000       0         00 011  0001111    111322  22


Q ss_pred             ecceee-ccccccccCCCCCCcCCcHHHHHHHHHHhCChHHHHhccccEEEecCCCCccchHHHHHHhhccCCCCcceEE
Q 020526          195 IGKERY-TVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTL  273 (325)
Q Consensus       195 l~~e~~-~~~E~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL~~~~~~~~v~v  273 (325)
                      +..+.| .+.+.++         ..+.++|.+++......  ..=...|+|+||+|.+|-+.++|++.+.       -.+
T Consensus       295 itr~~fe~l~~~~~---------~~~~~~i~~~l~~~~~~--~~~i~~V~lvGG~sr~p~v~~~l~~~f~-------~~~  356 (602)
T PF00012_consen  295 ITREEFEELCEPLL---------ERIIEPIEKALKDAGLK--KEDIDSVLLVGGSSRIPYVQEALKELFG-------KKI  356 (602)
T ss_dssp             EEHHHHHHHTHHHH---------HHTHHHHHHHHHHTT----GGGESEEEEESGGGGSHHHHHHHHHHTT-------SEE
T ss_pred             cccceecccccccc---------ccccccccccccccccc--ccccceeEEecCcccchhhhhhhhhccc-------ccc
Confidence            222222 1222233         34667777777765432  3335679999999999999999987761       133


Q ss_pred             eCCCCCCCCCCCceeeeehhhhhhc
Q 020526          274 VKPPEYMPENLTLYSAWIGGAILAK  298 (325)
Q Consensus       274 ~~~~~~~~~~~~~~~~W~G~si~a~  298 (325)
                      ....+      |..+.=.||+++|.
T Consensus       357 ~~~~~------p~~aVA~GAa~~a~  375 (602)
T PF00012_consen  357 SKSVN------PDEAVARGAALYAA  375 (602)
T ss_dssp             B-SS-------TTTHHHHHHHHHHH
T ss_pred             ccccc------cccccccccccchh
Confidence            33333      56778899999886

Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....

>PRK11678 putative chaperone; Provisional

Probab=98.69  E-value=6.5e-07  Score=85.76  Aligned_cols=66  Identities=17%  Similarity=0.149  Sum_probs=53.8

Q ss_pred             ceEEEEcCCCCC-----HHHHHH--HHHHhhhhcCCCeEEEechhhhhhhhcCC-----ceEEEEEcCCCceEEEEee
Q 020526           88 GQILFTDPLCSP-----KAVREQ--LVQLMFETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVI  153 (325)
Q Consensus        88 ~~vll~~~~~~~-----~~~r~~--l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVdiG~~~t~v~pv~  153 (325)
                      ..+|++.|....     ..+|+.  .+.-..+..|++.+.++++|.+|++++|.     .+-+|+|+|++++.++-|-
T Consensus       150 ~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~~~~~vlV~D~GGGT~D~Svv~  227 (450)
T PRK11678        150 TQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTTDCSMLL  227 (450)
T ss_pred             CcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccCCCCeEEEEEeCCCeEEEEEEE
Confidence            678999998765     555544  34566788999999999999999999873     5679999999999887764

>PRK09472 ftsA cell division protein FtsA; Reviewed

Probab=98.65  E-value=1.5e-07  Score=89.75  Aligned_cols=185  Identities=19%  Similarity=0.254  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCC-----ceEEEEEcCCCceEEEEeecCeeccccceeecCcch----
Q 020526          100 KAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGDE----  170 (325)
Q Consensus       100 ~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVdiG~~~t~v~pv~~G~~i~~~~~~~~~ge~----  170 (325)
                      ....+.+.+ +++..++.-..++.+|++++.+...     ...+|||+|+++|.++-+.+|.++..  ..+++|..    
T Consensus       165 ~~~~~~~~~-a~~~aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~~~--~~i~~GG~~it~  241 (420)
T PRK09472        165 NDMAKNIVK-AVERCGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALRHT--KVIPYAGNVVTS  241 (420)
T ss_pred             hHHHHHHHH-HHHHcCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECCEEEEE--eeeechHHHHHH
Confidence            445555655 6688999999999999999998753     34689999999999999999987754  45556621    


Q ss_pred             -h------chhhhcccCC-cceEEC----CCCcEEEecc----e-----eeccccccccCCCCCCcCCcHHHHHHHHHHh
Q 020526          171 -L------AYEKTQKSCE-IEQHTL----PDGQVIRIGK----E-----RYTVGEALFQPSILGLEAHGIVEQLVHTIST  229 (325)
Q Consensus       171 -~------~~~~~~~~~~-~~~~~l----pd~~~i~l~~----e-----~~~~~E~lF~p~~~~~~~~~i~~~I~~~i~~  229 (325)
                       .      .+...+ ... .....+    .+...+.+..    .     +....+++...      -..|.+.|.+++..
T Consensus       242 dIa~~l~i~~~~AE-~lK~~~g~~~~~~~~~~~~i~v~~~~~~~~~~i~~~~l~~ii~~r------~~ei~~~i~~~l~~  314 (420)
T PRK09472        242 DIAYAFGTPPSDAE-AIKVRHGCALGSIVGKDESVEVPSVGGRPPRSLQRQTLAEVIEPR------YTELLNLVNEEILQ  314 (420)
T ss_pred             HHHHHhCcCHHHHH-HHHHhcceeccccCCCCceeEecCCCCCCCeEEcHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence             0      111000 000 000000    1112222210    0     11111221111      12455667777777


Q ss_pred             CChHHHHh-----ccccEEEecCCCCccchHHHHHHhhccCCCCcceEEeCCCCCCC----CCCCceeeeehhhhhhcc
Q 020526          230 VSSENHRQ-----LLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMP----ENLTLYSAWIGGAILAKV  299 (325)
Q Consensus       230 ~~~d~r~~-----l~~nIil~GG~s~~~G~~~rl~~eL~~~~~~~~v~v~~~~~~~~----~~~~~~~~W~G~si~a~l  299 (325)
                      ++..++..     +-..|+||||+|++||+.+.+++.+     ..++++-.|.....    ...|.|++=.|..+|+.-
T Consensus       315 ~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f-----~~~vri~~P~~~~g~~~~~~~P~~ata~Gl~~~~~~  388 (420)
T PRK09472        315 LQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVF-----HTQVRIGAPLNITGLTDYAQEPYYSTAVGLLHYGKE  388 (420)
T ss_pred             HHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHh-----CCCeEEeCCcccCCChhhcCCcHHHHHHHHHHHhhh
Confidence            77766544     4455999999999999999999888     23445543322100    124788888998888763

>PRK13917 plasmid segregation protein ParM; Provisional

Probab=98.64  E-value=3.1e-07  Score=85.20  Aligned_cols=103  Identities=14%  Similarity=0.109  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHhccCCC-CCCCceEEE--EcCCCCC-HHHHHHHHHHhhhh-----------cCCCeEEEechhhhhhh
Q 020526           66 DAMEDLLHHVLYAGLGWE-EGNEGQILF--TDPLCSP-KAVREQLVQLMFET-----------FNISGFYSSEQAVLSLY  130 (325)
Q Consensus        66 ~~~~~il~~~~~~~l~~~-~~~~~~vll--~~~~~~~-~~~r~~l~~~lfe~-----------~~~~~v~~~~~~~~a~~  130 (325)
                      +..+.++..++...+... ......+++  .-|.-.- ...++++.+.+-..           ..+..|.+++|++.|++
T Consensus        88 ~~y~~L~~~Al~~~~~~~~~~~~~~v~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~  167 (344)
T PRK13917         88 KQFKTLVKCALAGLAARTVPEEVVEVVVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLL  167 (344)
T ss_pred             hhHHHHHHHHHHHhhhhhcCCCcceeEEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHH
Confidence            457778777763322111 102233333  4443321 22235555544221           45678999999999987


Q ss_pred             hcCC-------------ceEEEEEcCCCceEEEEeecCeeccccceeecCc
Q 020526          131 AVGR-------------ISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVG  168 (325)
Q Consensus       131 ~~g~-------------~tglVVdiG~~~t~v~pv~~G~~i~~~~~~~~~g  168 (325)
                      ....             ..-+|||+|+.+|.++.+.++.+.......++.|
T Consensus       168 ~~~~~~~g~~~~~~~~~~~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G  218 (344)
T PRK13917        168 DLYLDNDGVVADKAFEEGKVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKG  218 (344)
T ss_pred             HHHhcccCcccchhcccCcEEEEEcCCCcEEEEEEeCcEEcccccccccch
Confidence            5421             2459999999999999999999988877778888

>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=98.36  E-value=1e-05  Score=79.93  Aligned_cols=147  Identities=15%  Similarity=0.091  Sum_probs=93.5

Q ss_pred             ceEEEEcCCCcEEEeeeCCCC-CCc--------EecccceeecCCC-cccccCccccc-----cC--cee-cccc-----
Q 020526            2 EAAVVDAGSKLLKAGPAIPDQ-APS--------MVIPSQMKRVLED-GSSSVDNSTLV-----ED--VTV-DPVV-----   58 (325)
Q Consensus         2 ~~vViD~Gs~~~k~G~a~gd~-~P~--------~~~ps~~~~~~~~-~~~g~~~~~~~-----~~--~~~-~p~~-----   58 (325)
                      .+|=||+|+.++-+.+. ... .|.        ..+||++.-..+. ..+| ..+...     .+  +.. +-+.     
T Consensus         6 ~~iGIDlGTTNS~vA~~-~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG-~~A~~q~~~~p~~t~~~~kr~~G~~~~~   83 (579)
T COG0443           6 KAIGIDLGTTNSVVAVM-RGGGLPKVIENAEGERLTPSVVAFSKNGEVLVG-QAAKRQAVDNPENTIFSIKRKIGRGSNG   83 (579)
T ss_pred             eEEEEEcCCCcEEEEEE-eCCCCceEecCCCCCcccceEEEECCCCCEEec-HHHHHHhhhCCcceEEEEehhcCCCCCC
Confidence            36889999999999999 433 343        3445665544343 5666 333111     10  111 1111     


Q ss_pred             -------CCeecCHH-HHHHHHHHHH---HhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhh
Q 020526           59 -------RGFIRDWD-AMEDLLHHVL---YAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVL  127 (325)
Q Consensus        59 -------~g~i~d~~-~~~~il~~~~---~~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~  127 (325)
                             .|.....+ ....++.++-   ...++.   .-..++++.|......+|+.+.+. .+..|++-+.++++|.+
T Consensus        84 ~~~~~~~~~~~~~~eeisa~~L~~lk~~ae~~lg~---~v~~~VItVPayF~d~qR~at~~A-~~iaGl~vlrlinEPtA  159 (579)
T COG0443          84 LKISVEVDGKKYTPEEISAMILTKLKEDAEAYLGE---KVTDAVITVPAYFNDAQRQATKDA-ARIAGLNVLRLINEPTA  159 (579)
T ss_pred             CcceeeeCCeeeCHHHHHHHHHHHHHHHHHHhhCC---CcceEEEEeCCCCCHHHHHHHHHH-HHHcCCCeEEEecchHH
Confidence                   12222222 2223333321   123333   448899999999998887666554 46789999999999999


Q ss_pred             hhhhcCC-----ceEEEEEcCCCceEEEEeec
Q 020526          128 SLYAVGR-----ISGCTVDIGHGKIDIAPVIE  154 (325)
Q Consensus       128 a~~~~g~-----~tglVVdiG~~~t~v~pv~~  154 (325)
                      |++++|.     .+-+|+|+|++++.++-|-=
T Consensus       160 AAlayg~~~~~~~~vlV~DlGGGTfDvSll~~  191 (579)
T COG0443         160 AALAYGLDKGKEKTVLVYDLGGGTFDVSLLEI  191 (579)
T ss_pred             HHHHhHhccCCCcEEEEEEcCCCCEEEEEEEE
Confidence            9999974     46799999999999988753

>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A

Probab=98.36  E-value=3e-06  Score=78.68  Aligned_cols=116  Identities=16%  Similarity=0.328  Sum_probs=62.8

Q ss_pred             eEEEEEcCCCceEEEEeecCeeccccceeecCcch-----------hchhhhcccCCcceEECCCCcEEEecceeecccc
Q 020526          136 SGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGDE-----------LAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGE  204 (325)
Q Consensus       136 tglVVdiG~~~t~v~pv~~G~~i~~~~~~~~~ge~-----------~~~~~~~~~~~~~~~~lpd~~~i~l~~e~~~~~E  204 (325)
                      +-++||+|+..|.++-+.+|.++..  +.+++|.+           .++.+....  .....+++.       ....+-+
T Consensus       181 ~~~lvdiG~~~t~~~i~~~g~~~f~--R~i~~G~~~l~~~i~~~~~i~~~~Ae~~--k~~~~l~~~-------~~~~~l~  249 (340)
T PF11104_consen  181 TVALVDIGASSTTVIIFQNGKPIFS--RSIPIGGNDLTEAIARELGIDFEEAEEL--KRSGGLPEE-------YDQDALR  249 (340)
T ss_dssp             EEEEEEE-SS-EEEEEEETTEEEEE--EEES-SHHHHHHHHHHHTT--HHHHHHH--HHHT-------------HHHHHH
T ss_pred             eEEEEEecCCeEEEEEEECCEEEEE--EEEeeCHHHHHHHHHHhcCCCHHHHHHH--HhcCCCCcc-------hHHHHHH
Confidence            4589999999999999999998865  56677722           122211100  011112220       0011111


Q ss_pred             ccccCCCCCCcCCcHHHHHHHHHHhCChHHHHhccccEEEecCCCCccchHHHHHHhhccCCCCcceEEeCC
Q 020526          205 ALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKP  276 (325)
Q Consensus       205 ~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL~~~~~~~~v~v~~~  276 (325)
                      .++         ..|..-|.++++-.-......-.+.|+|+||++.++|+.+.|+++|     ++++.+..+
T Consensus       250 ~~~---------~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l-----~~~v~~~~p  307 (340)
T PF11104_consen  250 PFL---------EELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEEL-----GIPVEVINP  307 (340)
T ss_dssp             HHH---------HHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHH-----TSEEEE--G
T ss_pred             HHH---------HHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHH-----CCceEEcCh
Confidence            122         2456666666654433334445778999999999999999999999     556666544

>TIGR03739 PRTRC_D PRTRC system protein D

Probab=98.34  E-value=1.9e-06  Score=79.20  Aligned_cols=100  Identities=14%  Similarity=0.076  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhh--------cCCCeEEEechhhhhhhhc-----
Q 020526           66 DAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFET--------FNISGFYSSEQAVLSLYAV-----  132 (325)
Q Consensus        66 ~~~~~il~~~~~~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~--------~~~~~v~~~~~~~~a~~~~-----  132 (325)
                      +....++.+++.. .+.+  ....+++.-|...-...|+.+.+.+-..        ..+..|.++||++.|.+..     
T Consensus        84 ~~~~~L~~~Al~~-~~~~--~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~  160 (320)
T TIGR03739        84 PEYMALLRGALAL-SKVR--EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHG  160 (320)
T ss_pred             HHHHHHHHHHHHH-hcCC--CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCC
Confidence            3567777777754 2222  2224666656555466777777776532        5778899999999887754     


Q ss_pred             ----CCceEEEEEcCCCceEEEEeecCeeccccceeecCc
Q 020526          133 ----GRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVG  168 (325)
Q Consensus       133 ----g~~tglVVdiG~~~t~v~pv~~G~~i~~~~~~~~~g  168 (325)
                          ...+.+|||+|+.+|.++.+-++.+.......++.|
T Consensus       161 ~~~~~~~~~lVIDIG~~TtD~~~~~~~~~~~~~s~s~~~G  200 (320)
T TIGR03739       161 KLLTGKEQSLIIDPGYFTFDWLVARGMRLVQKRSGSVNGG  200 (320)
T ss_pred             CcccCcCcEEEEecCCCeeeeehccCCEEcccccCCchhH
Confidence                234569999999999999888888877766667777

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.

>TIGR01175 pilM type IV pilus assembly protein PilM

Probab=98.23  E-value=0.0002  Score=66.56  Aligned_cols=143  Identities=17%  Similarity=0.234  Sum_probs=80.9

Q ss_pred             CHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhc----------C-Cc-eEEEEEcCCCceEEEEeecCeeccccceeec
Q 020526           99 PKAVREQLVQLMFETFNISGFYSSEQAVLSLYAV----------G-RI-SGCTVDIGHGKIDIAPVIEGAVQHIASRRFE  166 (325)
Q Consensus        99 ~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~----------g-~~-tglVVdiG~~~t~v~pv~~G~~i~~~~~~~~  166 (325)
                      ++...+.+.++ |+..++.-..+..++++.+-+.          . .. +.++||+|+++|+++.+.+|.++..  +.++
T Consensus       141 ~~~~v~~~~~~-~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~~~--r~i~  217 (348)
T TIGR01175       141 RKEVVDSRLHA-LKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRMLFT--REVP  217 (348)
T ss_pred             cHHHHHHHHHH-HHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEEEE--EEee
Confidence            56666666665 5777877777777776654332          1 22 4899999999999999999988875  4555


Q ss_pred             Ccch-----------hchhhhcccCCcceEECCCCcEEEecceeeccccccccCCCCCCcCCcHHHHHHHHHHhCChHHH
Q 020526          167 VGDE-----------LAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENH  235 (325)
Q Consensus       167 ~ge~-----------~~~~~~~~~~~~~~~~lpd~~~i~l~~e~~~~~E~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r  235 (325)
                      +|..           .+++.... . ...+..++..       ...+.+..+         ..+..-|.+++.-.-....
T Consensus       218 ~G~~~i~~~i~~~~~~~~~~Ae~-~-k~~~~~~~~~-------~~~~~~~~~---------~~l~~eI~~~l~~~~~~~~  279 (348)
T TIGR01175       218 FGTRQLTSELSRAYGLNPEEAGE-A-KQQGGLPLLY-------DPEVLRRFK---------GELVDEIRRSLQFFTAQSG  279 (348)
T ss_pred             chHHHHHHHHHHHcCCCHHHHHH-H-HhcCCCCCch-------hHHHHHHHH---------HHHHHHHHHHHHhhcCCCC
Confidence            6622           11111100 0 0000010000       000000000         1234444444432211122


Q ss_pred             HhccccEEEecCCCCccchHHHHHHhh
Q 020526          236 RQLLENTVLCGGTTSMTGFEDRFQKEA  262 (325)
Q Consensus       236 ~~l~~nIil~GG~s~~~G~~~rl~~eL  262 (325)
                      ....+.|+||||++.++||.+.|++++
T Consensus       280 ~~~i~~I~LtGgga~~~gl~~~l~~~l  306 (348)
T TIGR01175       280 TNSLDGLVLAGGGATLSGLDAAIYQRL  306 (348)
T ss_pred             CcccceEEEECccccchhHHHHHHHHH
Confidence            223567999999999999999999999

This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.

>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]

Probab=97.79  E-value=0.00011  Score=69.18  Aligned_cols=184  Identities=21%  Similarity=0.257  Sum_probs=103.2

Q ss_pred             CHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcC-----CceEEEEEcCCCceEEEEeecCeeccccceeecCcch---
Q 020526           99 PKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVG-----RISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGDE---  170 (325)
Q Consensus        99 ~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g-----~~tglVVdiG~~~t~v~pv~~G~~i~~~~~~~~~ge~---  170 (325)
                      +...-+.+.+ ++|+.+..-..++-+|++++.+.=     .-.+++||+|+++|+|..+.+|.+....  .+++|..   
T Consensus       163 ~~~~~~Nl~k-~v~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~G~l~~~~--~ipvgG~~vT  239 (418)
T COG0849         163 PKNILENLEK-CVERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALRYTG--VIPVGGDHVT  239 (418)
T ss_pred             chHHHHHHHH-HHHHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEECCEEEEEe--eEeeCccHHH
Confidence            3444455554 448888888888889999887763     3478999999999999999999988764  4566622   


Q ss_pred             --------hchhhhcccCC----cceEEC-CCCcEEEec---c------eeeccccccccCCCCCCcCCcHHHHHHHHHH
Q 020526          171 --------LAYEKTQKSCE----IEQHTL-PDGQVIRIG---K------ERYTVGEALFQPSILGLEAHGIVEQLVHTIS  228 (325)
Q Consensus       171 --------~~~~~~~~~~~----~~~~~l-pd~~~i~l~---~------e~~~~~E~lF~p~~~~~~~~~i~~~I~~~i~  228 (325)
                              ..++..+ +..    ...+.+ .+...+.+.   .      .+..+.++.-      ...+.+.+++.+.|+
T Consensus       240 ~DIa~~l~t~~~~AE-~iK~~~g~a~~~~~~~~~~i~v~~vg~~~~~~~t~~~ls~II~------aR~~Ei~~lV~~~l~  312 (418)
T COG0849         240 KDIAKGLKTPFEEAE-RIKIKYGSALISLADDEETIEVPSVGSDIPRQVTRSELSEIIE------ARVEEILELVKAELR  312 (418)
T ss_pred             HHHHHHhCCCHHHHH-HHHHHcCccccCcCCCcceEecccCCCcccchhhHHHHHHHHH------hhHHHHHHHHHHHHH
Confidence                    1111100 000    000000 111111110   0      0111111110      011334445555555


Q ss_pred             hCChHHHHhccccEEEecCCCCccchHHHHHHhhccCCCCcceEEeCCCCCCC----CCCCceeeeehhhhhhcc
Q 020526          229 TVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMP----ENLTLYSAWIGGAILAKV  299 (325)
Q Consensus       229 ~~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL~~~~~~~~v~v~~~~~~~~----~~~~~~~~W~G~si~a~l  299 (325)
                      +.-..  ..+-+.|+||||++++||+.+--++-+.     .++++-.|-.+.-    ...|.|++=.|.-.++..
T Consensus       313 ~~g~~--~~~~~gvVlTGG~a~l~Gi~elA~~if~-----~~vRig~P~~~~Gl~d~~~~p~fs~avGl~~~~~~  380 (418)
T COG0849         313 KSGLP--NHLPGGVVLTGGGAQLPGIVELAERIFG-----RPVRLGVPLNIVGLTDIARNPAFSTAVGLLLYGAL  380 (418)
T ss_pred             HcCcc--ccCCCeEEEECchhcCccHHHHHHHhcC-----CceEeCCCccccCchhhccCchhhhhHHHHHHHhh
Confidence            54322  5567789999999999999987776551     2333322211110    012789999999888885

>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=97.58  E-value=0.0018  Score=58.21  Aligned_cols=119  Identities=23%  Similarity=0.363  Sum_probs=71.4

Q ss_pred             EEEEEcCCCceEEEEeecCeeccccceeecCcch-----------hchhhhcccCCcceEECCCCcEEEecceeeccccc
Q 020526          137 GCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGDE-----------LAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEA  205 (325)
Q Consensus       137 glVVdiG~~~t~v~pv~~G~~i~~~~~~~~~ge~-----------~~~~~~~~~~~~~~~~lpd~~~i~l~~e~~~~~E~  205 (325)
                      .+|+|||+..|.++-+.+|+++..  +..++|.+           +++.+..+  .+..+.+|+....          |.
T Consensus       195 vav~~Igat~s~l~vi~~gk~ly~--r~~~~g~~Qlt~~i~r~~~L~~~~a~~--~k~~~~~P~~y~~----------~v  260 (354)
T COG4972         195 VAVFDIGATSSELLVIQDGKILYT--REVPVGTDQLTQEIQRAYSLTEEKAEE--IKRGGTLPTDYGS----------EV  260 (354)
T ss_pred             heeeeecccceEEEEEECCeeeeE--eeccCcHHHHHHHHHHHhCCChhHhHH--HHhCCCCCCchhH----------HH
Confidence            358999999999999999999986  66677733           12222111  1244555552110          00


Q ss_pred             cccCCCCCCcCCcHHHHHHHHHHhCChHHHHhccccEEEecCCCCccchHHHHHHhhccCCCCcceEEeCCCCCC
Q 020526          206 LFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYM  280 (325)
Q Consensus       206 lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL~~~~~~~~v~v~~~~~~~  280 (325)
                      + .|     ....|.+-|.++|+-.=.----.-...|+|+||++.+.|+.+.+++.|     ++++.+.+|-.+|
T Consensus       261 l-~~-----f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl-----~~~t~vanPf~~~  324 (354)
T COG4972         261 L-RP-----FLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRL-----SIPTEVANPFAYM  324 (354)
T ss_pred             H-HH-----HHHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHh-----CCCeEeeCHHHHH
Confidence            0 00     013466666666654211001112456999999999999999999999     4555555554333

>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]

Probab=97.22  E-value=0.007  Score=59.90  Aligned_cols=66  Identities=17%  Similarity=0.118  Sum_probs=57.1

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCC----------ceEEEEEcCCCceEEEEee
Q 020526           87 EGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR----------ISGCTVDIGHGKIDIAPVI  153 (325)
Q Consensus        87 ~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~----------~tglVVdiG~~~t~v~pv~  153 (325)
                      =..++++.|++....+|+.+++.. +-.|..-++++++..++++.+|.          +.-++-|+|.++|.++-|.
T Consensus       158 Ikd~ViTVP~~F~qaeR~all~Aa-~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativs  233 (902)
T KOG0104|consen  158 IKDMVITVPPFFNQAERRALLQAA-QIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVS  233 (902)
T ss_pred             hhheEEeCCcccCHHHHHHHHHHH-HhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEE
Confidence            467899999999999999998876 55788899999999999998873          3558889999999998885

>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative

Probab=97.14  E-value=0.009  Score=52.86  Aligned_cols=42  Identities=24%  Similarity=0.471  Sum_probs=31.3

Q ss_pred             cEEEecCCCCccchHHHHHHhhccCCCCcceEEeCCCCCCCCCCCceeeeehhhh
Q 020526          241 NTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAI  295 (325)
Q Consensus       241 nIil~GG~s~~~G~~~rl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si  295 (325)
                      .|+++||.+..+++.+++.+.|       ...+..+++      +.+.+=+|+++
T Consensus       206 ~Vvl~GGva~n~~l~~~l~~~l-------g~~v~~~~~------~~~~~AlGaAl  247 (248)
T TIGR00241       206 PIVFTGGVSKNKGLVKALEKKL-------GMKVITPPE------PQIVGAVGAAL  247 (248)
T ss_pred             CEEEECccccCHHHHHHHHHHh-------CCcEEcCCC------ccHHHHHHHHh
Confidence            6999999999999999999988       223443444      45666667665

This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.

>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]

Probab=97.12  E-value=0.009  Score=54.87  Aligned_cols=44  Identities=25%  Similarity=0.343  Sum_probs=39.6

Q ss_pred             EEEecCCCCccchHHHHHHhhccCCCCcceEEeCCCCCCCCCCCceeeeehhhhhhc
Q 020526          242 TVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAK  298 (325)
Q Consensus       242 Iil~GG~s~~~G~~~rl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~  298 (325)
                      |+++||++...++.+.|++.|       ..+|+.||.      +++..=+||+++++
T Consensus       346 iv~~GGva~n~av~~ale~~l-------g~~V~vP~~------~ql~GAiGAAL~a~  389 (396)
T COG1924         346 IVLQGGVALNKAVVRALEDLL-------GRKVIVPPY------AQLMGAIGAALIAK  389 (396)
T ss_pred             EEEECcchhhHHHHHHHHHHh-------CCeeecCCc------cchhhHHHHHHHHh
Confidence            999999999999999999998       457777887      88889999999987

>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15

Probab=96.89  E-value=0.0068  Score=56.72  Aligned_cols=49  Identities=27%  Similarity=0.415  Sum_probs=39.4

Q ss_pred             hccccEEEecCCCCccchHHHHHHhhccCCCCcceEEeCCCCCCCCCCCceeeeehhhhhhc
Q 020526          237 QLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAK  298 (325)
Q Consensus       237 ~l~~nIil~GG~s~~~G~~~rl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~  298 (325)
                      .+-+.|+++||.+..+|+.+.|++.|       ..+++-+++      +++..=+||+++|+
T Consensus       354 ~i~~~VvftGGva~N~gvv~ale~~L-------g~~iivPe~------pq~~GAiGAAL~A~  402 (404)
T TIGR03286       354 DVREPVILVGGTSLIEGLVKALGDLL-------GIEVVVPEY------SQYIGAVGAALLAS  402 (404)
T ss_pred             CCCCcEEEECChhhhHHHHHHHHHHh-------CCcEEECCc------ccHHHHHHHHHHhc
Confidence            34455999999999999999999998       334544555      78888999999985

Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.

>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit

Probab=96.79  E-value=0.013  Score=52.60  Aligned_cols=49  Identities=16%  Similarity=0.246  Sum_probs=38.4

Q ss_pred             hccccEEEecCCCCccchHHHHHHhhccCCCCcceEEe-CCCCCCCCCCCceeeeehhhhhhc
Q 020526          237 QLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLV-KPPEYMPENLTLYSAWIGGAILAK  298 (325)
Q Consensus       237 ~l~~nIil~GG~s~~~G~~~rl~~eL~~~~~~~~v~v~-~~~~~~~~~~~~~~~W~G~si~a~  298 (325)
                      .+-.+|+++||.+..+|+.+.|+++|       ..++. .+++      |++..=+||+++|.
T Consensus       238 ~i~~~v~~~GGva~N~~l~~al~~~L-------g~~v~~~p~~------p~~~GAlGAAL~A~  287 (293)
T TIGR03192       238 GVEEGFFITGGIAKNPGVVKRIERIL-------GIKAVDTKID------SQIAGALGAALFGY  287 (293)
T ss_pred             CCCCCEEEECcccccHHHHHHHHHHh-------CCCceeCCCC------ccHHHHHHHHHHHH
Confidence            45567999999999999999999999       22333 2334      67888899999984

Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.

>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional

Probab=96.77  E-value=0.13  Score=49.01  Aligned_cols=149  Identities=16%  Similarity=0.189  Sum_probs=77.9

Q ss_pred             eEEEEcCCCcEEEeeeC---CCCCCcEecccceeecCCCcccccCcccccc-CceeccccCCeecCHHHHHHHHHHHHHh
Q 020526            3 AAVVDAGSKLLKAGPAI---PDQAPSMVIPSQMKRVLEDGSSSVDNSTLVE-DVTVDPVVRGFIRDWDAMEDLLHHVLYA   78 (325)
Q Consensus         3 ~vViD~Gs~~~k~G~a~---gd~~P~~~~ps~~~~~~~~~~~g~~~~~~~~-~~~~~p~~~g~i~d~~~~~~il~~~~~~   78 (325)
                      .|=||+||.+|.+=||.   .+..+.+..|-+.        +- |.--..+ +.-..|+.....-|-+.++.+++.-|.+
T Consensus         8 SVGIDIGTsTTqlvfSrl~l~n~a~~~~vpr~~--------I~-dkev~yrS~i~fTPl~~~~~ID~~~i~~~V~~ey~~   78 (475)
T PRK10719          8 SVGIDIGTTTTQVIFSRLELENRASVFQVPRIE--------II-DKEIIYRSPIYFTPLLKQGEIDEAAIKELIEEEYQK   78 (475)
T ss_pred             EEEEeccCceEEEEEEEEEEecccccccCceEE--------Ee-eeEEEEecCceecCCCCCccccHHHHHHHHHHHHHH
Confidence            46799999999998883   1111111111111        11 1100000 2224688777778999999999988854


Q ss_pred             ccCCCC-CCCce-EEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEe-------chhhhhhhhcC--------CceEEEEE
Q 020526           79 GLGWEE-GNEGQ-ILFTDPLCSPKAVREQLVQLMFETFNISGFYSS-------EQAVLSLYAVG--------RISGCTVD  141 (325)
Q Consensus        79 ~l~~~~-~~~~~-vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~-------~~~~~a~~~~g--------~~tglVVd  141 (325)
                       -++.+ +-+.. .+++-...    .++.+.+++ ++++...=-|+       -+.+++.+++|        ....++||
T Consensus        79 -Agi~~~die~~ahIITg~~~----~~~Nl~~~v-~~~~~~~gdfVVA~AG~~le~iva~~ASg~avLseEke~gVa~ID  152 (475)
T PRK10719         79 -AGIAPESIDSGAVIITGETA----RKENAREVV-MALSGSAGDFVVATAGPDLESIIAGKGAGAQTLSEERNTRVLNID  152 (475)
T ss_pred             -cCCCHHHccccEEEEEechh----HHHHHHHHH-HHhcccccceeeeccCccHHHhhhHHHhhHHHhhhhccCceEEEE
Confidence             45555 11222 23332222    222222222 32221111111       11122222222        24568999


Q ss_pred             cCCCceEEEEeecCeeccccceeecCc
Q 020526          142 IGHGKIDIAPVIEGAVQHIASRRFEVG  168 (325)
Q Consensus       142 iG~~~t~v~pv~~G~~i~~~~~~~~~g  168 (325)
                      ||+++|+++.+.+|.++...  .+++|
T Consensus       153 IGgGTT~iaVf~~G~l~~T~--~l~vG  177 (475)
T PRK10719        153 IGGGTANYALFDAGKVIDTA--CLNVG  177 (475)
T ss_pred             eCCCceEEEEEECCEEEEEE--EEecc
Confidence            99999999999999988764  34444

>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []

Probab=96.02  E-value=0.051  Score=49.97  Aligned_cols=161  Identities=23%  Similarity=0.250  Sum_probs=76.6

Q ss_pred             EEEEcCCCcEEEeeeCCCCC-CcEecccceeecCCCcccccCcc-c--cc--cCceeccccCCeec----CH--HHH-HH
Q 020526            4 AVVDAGSKLLKAGPAIPDQA-PSMVIPSQMKRVLEDGSSSVDNS-T--LV--EDVTVDPVVRGFIR----DW--DAM-ED   70 (325)
Q Consensus         4 vViD~Gs~~~k~G~a~gd~~-P~~~~ps~~~~~~~~~~~g~~~~-~--~~--~~~~~~p~~~g~i~----d~--~~~-~~   70 (325)
                      |.||-|+.++|+.+. .+.. -..+.|+.....-.....| +.. .  ..  +.|...|.....+.    +|  ..+ .-
T Consensus         3 i~iDdG~~~~K~~~~-~~~~~~~~~~~~s~~~~~~~~~~~-~~~~~~y~v~g~~yt~~~~~~~~~~t~~~~y~~s~~n~~   80 (318)
T PF06406_consen    3 IAIDDGSTNVKLAWY-EDGKIKTSISPNSFRSGWKVSFMG-DSKSFNYEVDGEKYTVDEVSSDALDTTHVDYQYSDLNLV   80 (318)
T ss_dssp             EEEEE-SSEEEEEEE--SS-EEEEEEE--EESS----S-S-SS---EEESSSSEEEESTTBTTTTSS-HGGGGGSHHHHH
T ss_pred             EEEecCCCceeEEEe-cCCeEEEEeccccccccccccccC-CCceeEEEECCEEEEEcCCCCccccccccccccchhhHH
Confidence            789999999999998 4432 1233444332211111122 110 0  00  01111222222211    22  122 33


Q ss_pred             HHHHHHHhccCCCCCCCceEEEEcCCC--CC---HHHHHHHHH---Hhh--------hhcCCCeEEEechhhhhhhhc--
Q 020526           71 LLHHVLYAGLGWEEGNEGQILFTDPLC--SP---KAVREQLVQ---LMF--------ETFNISGFYSSEQAVLSLYAV--  132 (325)
Q Consensus        71 il~~~~~~~l~~~~~~~~~vll~~~~~--~~---~~~r~~l~~---~lf--------e~~~~~~v~~~~~~~~a~~~~--  132 (325)
                      +++|++.+ -+..+ .+-.++++.|.-  ..   ...++.+.+   -+.        +.+.+..|.+.||+++|.|..  
T Consensus        81 av~haL~~-~G~~~-~~V~lvvGLPl~~y~~~~~~~~~~~i~rk~~n~~~~v~~~g~~~i~I~~V~V~PQ~~~A~~~~~~  158 (318)
T PF06406_consen   81 AVHHALLK-AGLEP-QDVDLVVGLPLSEYYDQDKQKNEENIERKKENLMRPVELNGGYTITIKDVEVFPQSVGAVFDALM  158 (318)
T ss_dssp             HHHHHHHH-HS--S-SEEEEEEEE-HHHHB-TTSSB-HHHHHHHHHHTTS-EEETTB---EEEEEEEEESSHHHHHHHHH
T ss_pred             HHHHHHHH-cCCCC-CCeEEEecCCHHHHHhhhhhhHHHHHHhhhcccccceeecCceeEEEeeEEEEcccHHHHHHHHH
Confidence            55677754 46666 667777777722  11   111222211   121        234578999999999998874  


Q ss_pred             ---CCceEEEEEcCCCceEEEEeecCeeccccc-eeecCc
Q 020526          133 ---GRISGCTVDIGHGKIDIAPVIEGAVQHIAS-RRFEVG  168 (325)
Q Consensus       133 ---g~~tglVVdiG~~~t~v~pv~~G~~i~~~~-~~~~~g  168 (325)
                         ...+-+|||||+.+|.++.|.++....... ...+.|
T Consensus       159 ~~~~~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~G  198 (318)
T PF06406_consen  159 DLDEDESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIG  198 (318)
T ss_dssp             TS-TTSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSS
T ss_pred             hhcccCcEEEEEcCCCeEEeeeecCCccccchhccCCchh
Confidence               235789999999999999887765444333 334566

They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.

>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]

Probab=95.92  E-value=0.22  Score=49.31  Aligned_cols=67  Identities=13%  Similarity=0.155  Sum_probs=57.6

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCC------------ceEEEEEcCCCceEEEEee
Q 020526           86 NEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR------------ISGCTVDIGHGKIDIAPVI  153 (325)
Q Consensus        86 ~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------------~tglVVdiG~~~t~v~pv~  153 (325)
                      .-.++++..|.+.+..+|..+++.. .-.++.-+-++.+..++++++|.            .+-+-||+||+.++++...
T Consensus       136 ~v~DcvIavP~~FTd~qRravldAA-~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~a  214 (727)
T KOG0103|consen  136 PVSDCVIAVPSYFTDSQRRAVLDAA-RIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAA  214 (727)
T ss_pred             CCCCeeEeccccccHHHHHHHHhHH-hhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeee
Confidence            5678999999999999999999877 56788999999999999999883            3468899999999887664

>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]

Probab=95.68  E-value=0.13  Score=49.94  Aligned_cols=198  Identities=16%  Similarity=0.151  Sum_probs=100.7

Q ss_pred             CceEEEEcCCCcEEEeeeCCCCCCcEecccceeecCCCcccccCccccccCceeccccCCeecCHHHHHHHHHHH--HHh
Q 020526            1 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTVDPVVRGFIRDWDAMEDLLHHV--LYA   78 (325)
Q Consensus         1 m~~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~~~~~~g~~~~~~~~~~~~~p~~~g~i~d~~~~~~il~~~--~~~   78 (325)
                      |..-+||+||.++|.=.+.  ..|  --+..+.+.+...-+| +-..          ..|.+ +-+++++.++-+  |.+
T Consensus         3 ~~~A~IDiGSNS~rlvV~~--~~~--~~~~~l~~~k~~vrLg-egl~----------~~g~L-~~eai~R~~~aL~~f~e   66 (492)
T COG0248           3 RRVAAIDLGSNSFRLVVAE--ITP--GSFQVLFREKRIVRLG-EGLD----------ATGNL-SEEAIERALSALKRFAE   66 (492)
T ss_pred             ceEEEEEecCCeEEEEEEe--ccC--Cccchhhhhhhheehh-cCcc----------ccCCc-CHHHHHHHHHHHHHHHH
Confidence            3456999999999997772  223  1111221111111122 1100          12222 234555555321  112


Q ss_pred             cc-CCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEech---hhhhhhh----cC-CceEEEEEcCCCceEE
Q 020526           79 GL-GWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQ---AVLSLYA----VG-RISGCTVDIGHGKIDI  149 (325)
Q Consensus        79 ~l-~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~---~~~a~~~----~g-~~tglVVdiG~~~t~v  149 (325)
                      .+ ...+ .+-.++-|.-.. .-.+.+...+.+-+.++++ +.+++.   +.++.++    .+ ...++|+|+|+++|.+
T Consensus        67 ~~~~~~~-~~v~~vATsA~R-~A~N~~eFl~rv~~~~G~~-ievIsGeeEArl~~lGv~~~~~~~~~~lv~DIGGGStEl  143 (492)
T COG0248          67 LLDGFGA-EEVRVVATSALR-DAPNGDEFLARVEKELGLP-IEVISGEEEARLIYLGVASTLPRKGDGLVIDIGGGSTEL  143 (492)
T ss_pred             HHhhCCC-CEEEEehhHHHH-cCCCHHHHHHHHHHHhCCc-eEEeccHHHHHHHHHHHHhcCCCCCCEEEEEecCCeEEE
Confidence            22 1223 333444443322 2233444445555556654 344433   3333332    24 6789999999999999


Q ss_pred             EEeecCeeccccceeecCcchhchhhhcccCCcceEECCCCcEEEecceeeccccccccCCCC-CCcCCcHHHHHHHHHH
Q 020526          150 APVIEGAVQHIASRRFEVGDELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSIL-GLEAHGIVEQLVHTIS  228 (325)
Q Consensus       150 ~pv~~G~~i~~~~~~~~~ge~~~~~~~~~~~~~~~~~lpd~~~i~l~~e~~~~~E~lF~p~~~-~~~~~~i~~~I~~~i~  228 (325)
                      +-+-+..+...                        ..+|-      +  +....|.+|..... ..+...+...+.+-++
T Consensus       144 ~~g~~~~~~~~------------------------~Sl~~------G--~v~lt~~~~~~~~~s~~~~~~~~~~~~~~l~  191 (492)
T COG0248         144 VLGDNFEIGLL------------------------ISLPL------G--CVRLTERFFPDDPISEENFAKARDAVREELE  191 (492)
T ss_pred             EEecCCcccee------------------------EEeec------c--eEEeehhhcCCCCCCHHHHHHHHHHHHHHHH
Confidence            88764433322                        11111      1  22334555543211 1123456677777888


Q ss_pred             hCChHHHHhccccEEEecCCC
Q 020526          229 TVSSENHRQLLENTVLCGGTT  249 (325)
Q Consensus       229 ~~~~d~r~~l~~nIil~GG~s  249 (325)
                      ..+..++..++.+.+-+||+-
T Consensus       192 ~~~~~~~~~~~~~~vg~sGT~  212 (492)
T COG0248         192 EIAKEYRIAGWAGLVGTSGTI  212 (492)
T ss_pred             hhhHHHHhhhhccEEEccHHH
Confidence            888888888888888888863

>PRK10854 exopolyphosphatase; Provisional

Probab=95.62  E-value=0.14  Score=50.40  Aligned_cols=139  Identities=16%  Similarity=0.039  Sum_probs=71.6

Q ss_pred             ceEEEEcCCCcEEEeeeCCCCCCcEecccceeecCCCcccccCccccccCceeccccCCeecCHHHHHHHHHHH--HHhc
Q 020526            2 EAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTVDPVVRGFIRDWDAMEDLLHHV--LYAG   79 (325)
Q Consensus         2 ~~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~~~~~~g~~~~~~~~~~~~~p~~~g~i~d~~~~~~il~~~--~~~~   79 (325)
                      ..-|||+||.++|.-.+..++....++-+.    +...-+| +.          -...|.+ +.+.+++.++-+  |...
T Consensus        12 ~~A~IDIGSNSirL~I~e~~~~~~~~i~~~----k~~vrLg-~g----------~~~~g~L-s~e~~~r~~~~L~~F~~~   75 (513)
T PRK10854         12 EFAAVDLGSNSFHMVIARVVDGAMQIIGRL----KQRVHLA-DG----------LDSDNML-SEEAMERGLNCLSLFAER   75 (513)
T ss_pred             EEEEEEeccchheEEEEEecCCcEEEeeee----eEEEECC-CC----------cCCCCCc-CHHHHHHHHHHHHHHHHH
Confidence            346999999999998883111111111110    0111122 11          1123433 345555555422  1122


Q ss_pred             cCC-CCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechh---hhhhhhc-----CCceEEEEEcCCCceEEE
Q 020526           80 LGW-EEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQA---VLSLYAV-----GRISGCTVDIGHGKIDIA  150 (325)
Q Consensus        80 l~~-~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~---~~a~~~~-----g~~tglVVdiG~~~t~v~  150 (325)
                      +.. .. .+..++-|.- +-.-.++...++-+.+..|++ +-+++..   .+...+.     ...+++|||||+++|.++
T Consensus        76 ~~~~~v-~~v~~vATsA-lReA~N~~~fl~~i~~~tGl~-i~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~  152 (513)
T PRK10854         76 LQGFSP-ANVCIVGTHT-LRQALNATDFLKRAEKVIPYP-IEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELV  152 (513)
T ss_pred             HHhCCC-CeEEEEehHH-HHcCcCHHHHHHHHHHHHCCC-eEEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEE
Confidence            211 22 3344444433 324456777777777777765 4444443   2222211     124689999999999999


Q ss_pred             EeecCeecc
Q 020526          151 PVIEGAVQH  159 (325)
Q Consensus       151 pv~~G~~i~  159 (325)
                      -+-+|.+..
T Consensus       153 ~~~~~~~~~  161 (513)
T PRK10854        153 IGENFEPIL  161 (513)
T ss_pred             EecCCCeeE
Confidence            998876544

>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional

Probab=95.58  E-value=0.13  Score=50.30  Aligned_cols=72  Identities=13%  Similarity=0.105  Sum_probs=43.5

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechh---hhhhhhc-----CCceEEEEEcCCCceEEEEeecCeec
Q 020526           87 EGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQA---VLSLYAV-----GRISGCTVDIGHGKIDIAPVIEGAVQ  158 (325)
Q Consensus        87 ~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~---~~a~~~~-----g~~tglVVdiG~~~t~v~pv~~G~~i  158 (325)
                      +..++-|.- .-.-.+++..++-+.+..|++ +-+++..   .++.++.     ...+++|||||+++|.++-+-+|.+.
T Consensus        78 ~i~~vATsA-vReA~N~~~fl~~i~~~tGl~-ievIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~  155 (496)
T PRK11031         78 QIRVVATAT-LRLAVNADEFLAKAQEILGCP-VQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQAT  155 (496)
T ss_pred             eEEEEEeHH-HHcCcCHHHHHHHHHHHHCCC-eEEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecCCcee
Confidence            344444433 324455677777777777754 3444433   2222211     12358999999999999988877665


Q ss_pred             cc
Q 020526          159 HI  160 (325)
Q Consensus       159 ~~  160 (325)
                      ..
T Consensus       156 ~~  157 (496)
T PRK11031        156 SL  157 (496)
T ss_pred             ee
Confidence            43

>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]

Probab=95.52  E-value=0.22  Score=46.34  Aligned_cols=73  Identities=18%  Similarity=0.160  Sum_probs=53.4

Q ss_pred             ccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcC------CceEEEEEcCCCceEEEE-
Q 020526           79 GLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVG------RISGCTVDIGHGKIDIAP-  151 (325)
Q Consensus        79 ~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g------~~tglVVdiG~~~t~v~p-  151 (325)
                      +|+.+.   ...+++.|......+|+..-+.- --.+..-+.++++|.+|++++|      ..+-+|.|.|++.-.|.- 
T Consensus       167 yLGkkv---~~AVvTvPAYFNDAQrQATKDAG-tIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlL  242 (663)
T KOG0100|consen  167 YLGKKV---THAVVTVPAYFNDAQRQATKDAG-TIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLL  242 (663)
T ss_pred             HhCCcc---cceEEecchhcchHHHhhhcccc-eeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEE
Confidence            455443   66788999988888887665422 2246667889999999999987      357799999998876644 


Q ss_pred             -eecC
Q 020526          152 -VIEG  155 (325)
Q Consensus       152 -v~~G  155 (325)
                       |-+|
T Consensus       243 tIdnG  247 (663)
T KOG0100|consen  243 TIDNG  247 (663)
T ss_pred             EEcCc
Confidence             4455

>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D

Probab=95.52  E-value=0.055  Score=48.00  Aligned_cols=50  Identities=16%  Similarity=0.320  Sum_probs=37.4

Q ss_pred             ccEEEecCCCCccchHHHHHHhhccCCCCcceEEeCCCCCCCCCCCceeeeehhhhhh
Q 020526          240 ENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILA  297 (325)
Q Consensus       240 ~nIil~GG~s~~~G~~~rl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a  297 (325)
                      ++|+++||.+..+++.+.|+++|...  ...+.+..+|+      |++..=+||++++
T Consensus       213 ~~v~~~GGva~n~~~~~~le~~l~~~--~~~~~v~~~~~------~q~~gAlGAAl~~  262 (262)
T TIGR02261       213 GTVLCTGGLALDAGLLEALKDAIQEA--KMAVAAENHPD------AIYAGAIGAALWG  262 (262)
T ss_pred             CcEEEECcccccHHHHHHHHHHhccC--CcceEecCCCc------chHHHHHHHHHcC
Confidence            46999999999999999999988211  12344544555      7788888888764

This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.

>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]

Probab=95.45  E-value=0.097  Score=45.73  Aligned_cols=23  Identities=35%  Similarity=0.550  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCceEEEEeecCe
Q 020526          134 RISGCTVDIGHGKIDIAPVIEGA  156 (325)
Q Consensus       134 ~~tglVVdiG~~~t~v~pv~~G~  156 (325)
                      ..+++.||+|..+|.|+||.+|.
T Consensus       129 ~dsci~VD~GSTTtDIIPi~~ge  151 (330)
T COG1548         129 KDSCILVDMGSTTTDIIPIKDGE  151 (330)
T ss_pred             CCceEEEecCCcccceEeecchh
Confidence            46799999999999999999996

>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]

Probab=95.22  E-value=0.2  Score=49.56  Aligned_cols=67  Identities=13%  Similarity=0.113  Sum_probs=54.3

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCC-------ceEEEEEcCCCceEEEEee
Q 020526           86 NEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR-------ISGCTVDIGHGKIDIAPVI  153 (325)
Q Consensus        86 ~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-------~tglVVdiG~~~t~v~pv~  153 (325)
                      .-..++++.|...+..+|+..-+-. ...+++.+.++++|.+|++++|.       .+-+|.|.|++...|.++.
T Consensus       142 ~v~~aviTVPa~F~~~Qr~at~~A~-~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~  215 (620)
T KOG0101|consen  142 TVKKAVVTVPAYFNDSQRAATKDAA-LIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLS  215 (620)
T ss_pred             ceeeEEEEecCCcCHHHHHHHHHHH-HhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEE
Confidence            3467899999888887777666544 55788999999999999999873       4569999999999888864

>TIGR03706 exo_poly_only exopolyphosphatase

Probab=94.49  E-value=0.4  Score=43.64  Aligned_cols=71  Identities=13%  Similarity=0.057  Sum_probs=44.5

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhh---h----cCCceEEEEEcCCCceEEEEeecCeecc
Q 020526           87 EGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLY---A----VGRISGCTVDIGHGKIDIAPVIEGAVQH  159 (325)
Q Consensus        87 ~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~---~----~g~~tglVVdiG~~~t~v~pv~~G~~i~  159 (325)
                      +..++.|.-.. .-.+++.+++.+.+..+++ +-+++..--|.|   +    ....+++++|+|+++|.++-+-+|.+..
T Consensus        72 ~i~~vaTsa~R-~A~N~~~~~~~i~~~tgi~-i~visg~eEa~l~~~gv~~~~~~~~~~v~DiGGGSte~~~~~~~~~~~  149 (300)
T TIGR03706        72 EVRAVATAALR-DAKNGPEFLREAEAILGLP-IEVISGEEEARLIYLGVAHTLPIADGLVVDIGGGSTELILGKDFEPGE  149 (300)
T ss_pred             eEEEEEcHHHH-cCCCHHHHHHHHHHHHCCC-eEEeChHHHHHHHHHHHHhCCCCCCcEEEEecCCeEEEEEecCCCEeE
Confidence            34445444433 4456778888887777753 455554422222   2    1234579999999999999887776543

It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.

>TIGR00671 baf pantothenate kinase, type III

Probab=93.51  E-value=1.8  Score=38.10  Aligned_cols=15  Identities=13%  Similarity=0.237  Sum_probs=14.0

Q ss_pred             EEEEcCCCcEEEeee
Q 020526            4 AVVDAGSKLLKAGPA   18 (325)
Q Consensus         4 vViD~Gs~~~k~G~a   18 (325)
                      ++||+|-.++|+|+-
T Consensus         2 L~iDiGNT~i~~g~~   16 (243)
T TIGR00671         2 LLIDVGNTRIVFALN   16 (243)
T ss_pred             EEEEECCCcEEEEEE
Confidence            689999999999988

This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.

>PRK13321 pantothenate kinase; Reviewed

Probab=93.35  E-value=1.6  Score=38.66  Aligned_cols=16  Identities=25%  Similarity=0.401  Sum_probs=14.8

Q ss_pred             eEEEEcCCCcEEEeee
Q 020526            3 AAVVDAGSKLLKAGPA   18 (325)
Q Consensus         3 ~vViD~Gs~~~k~G~a   18 (325)
                      .+.||+|..++|+|+.
T Consensus         2 iL~IDIGnT~ik~gl~   17 (256)
T PRK13321          2 LLLIDVGNTNIKLGVF   17 (256)
T ss_pred             EEEEEECCCeEEEEEE
Confidence            3789999999999999

>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein

Probab=93.26  E-value=1.4  Score=40.41  Aligned_cols=29  Identities=31%  Similarity=0.397  Sum_probs=26.0

Q ss_pred             cCCceEEEEEcCCCceEEEEeecCeeccc
Q 020526          132 VGRISGCTVDIGHGKIDIAPVIEGAVQHI  160 (325)
Q Consensus       132 ~g~~tglVVdiG~~~t~v~pv~~G~~i~~  160 (325)
                      ....+++.+|||..+|.|+||.+|.+...
T Consensus       125 ~~~~~~I~~DmGGTTtDi~~i~~G~p~~~  153 (318)
T TIGR03123       125 KRIPECLFVDMGSTTTDIIPIIDGEVAAK  153 (318)
T ss_pred             hcCCCEEEEEcCccceeeEEecCCEeeee
Confidence            34789999999999999999999998765

This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.

>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A

Probab=92.75  E-value=0.12  Score=48.31  Aligned_cols=51  Identities=14%  Similarity=0.277  Sum_probs=39.5

Q ss_pred             ccccEEEecCCCCccchHHHHHHhh-ccCCCCcceEEeCCCCCCCCCCCceeeeehhhhhh
Q 020526          238 LLENTVLCGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILA  297 (325)
Q Consensus       238 l~~nIil~GG~s~~~G~~~rl~~eL-~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a  297 (325)
                      +-.+|+++||.+..++|.+.|++.| ...+   ..+|..+++      +++..=+||+++|
T Consensus       381 i~~~VvftGGvA~N~gvv~aLe~~L~~~~~---~~~V~Vp~~------pq~~GALGAAL~a  432 (432)
T TIGR02259       381 ITDQFTFTGGVAKNEAAVKELRKLIKENYG---EVQINIDPD------SIYTGALGASEFA  432 (432)
T ss_pred             CCCCEEEECCccccHHHHHHHHHHHccccC---CCeEecCCC------ccHHHHHHHHHhC
Confidence            4567999999999999999999999 3321   234555666      7888889998875

This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).

>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis

Probab=92.09  E-value=1.6  Score=38.95  Aligned_cols=47  Identities=19%  Similarity=0.225  Sum_probs=33.5

Q ss_pred             EEEecCCCCccchHHHHHHhh-ccCCCCcceEEeCCCCCCCCCCCceeeeehhhhhh
Q 020526          242 TVLCGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILA  297 (325)
Q Consensus       242 Iil~GG~s~~~G~~~rl~~eL-~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a  297 (325)
                      |+++||......+.+.|.+.| +..+.. ++.+...        |.+.+..||.++|
T Consensus       224 v~l~GGv~~~~~~~~~l~~~l~~~~~~~-~~~~~~~--------~~~~~a~GAallA  271 (271)
T PF01869_consen  224 VVLSGGVFKNSPLVKALRDALKEKLPKV-PIIIPVE--------PQYDPAYGAALLA  271 (271)
T ss_dssp             EEEESGGGGCHHHHHHHGGGS-HHHHCC-TCECECC--------GSSHHHHHHHHHH
T ss_pred             EEEECCccCchHHHHHHHHHHHHhcCCC-ceEECCC--------CCccHHHHHHHhC
Confidence            999999998888888887666 433332 3333333        5688999999876

The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.

>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon

Probab=91.69  E-value=4.8  Score=38.69  Aligned_cols=149  Identities=15%  Similarity=0.200  Sum_probs=85.4

Q ss_pred             ceEEEEcCCCcEEEeeeC---CCCCCcEecccceeecCCCcccccCccccccCceeccccCCeecCHHHHHHHHHHHHHh
Q 020526            2 EAAVVDAGSKLLKAGPAI---PDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTVDPVVRGFIRDWDAMEDLLHHVLYA   78 (325)
Q Consensus         2 ~~vViD~Gs~~~k~G~a~---gd~~P~~~~ps~~~~~~~~~~~g~~~~~~~~~~~~~p~~~g~i~d~~~~~~il~~~~~~   78 (325)
                      -.|=||+||.+|++=|+.   ....+.+..|-..-..        -+.....++-..|+......|-+.++++++.-|.+
T Consensus         4 ~SVGIDIGTSTTQlvfSrl~l~n~a~~~~vPri~I~d--------keViYrS~I~fTPl~~~~~ID~~al~~iv~~eY~~   75 (473)
T PF06277_consen    4 LSVGIDIGTSTTQLVFSRLTLENRASGFSVPRIEIVD--------KEVIYRSPIYFTPLLSQTEIDAEALKEIVEEEYRK   75 (473)
T ss_pred             EEEEEeecCCceeEEEEEeEEEeccCCCccceEEEec--------cEEEecCCccccCCCCCCccCHHHHHHHHHHHHHH
Confidence            357799999999998883   1111222222211110        00000012224688887778999999999998864


Q ss_pred             ccCCCC-C-CCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEe-----chhhhhhhhcC------C--ceEEEEEcC
Q 020526           79 GLGWEE-G-NEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSS-----EQAVLSLYAVG------R--ISGCTVDIG  143 (325)
Q Consensus        79 ~l~~~~-~-~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~-----~~~~~a~~~~g------~--~tglVVdiG  143 (325)
                       -++.| + +.--|++|-... -+++-+.+.+.|-+..|  -+.+.     -++++|..++|      .  ..-+=+|||
T Consensus        76 -Agi~p~~I~TGAVIITGETA-rKeNA~~v~~~Ls~~aG--DFVVATAGPdLEsiiAgkGsGA~~~S~~~~~~V~NiDIG  151 (473)
T PF06277_consen   76 -AGITPEDIDTGAVIITGETA-RKENAREVLHALSGFAG--DFVVATAGPDLESIIAGKGSGAAALSKEHHTVVANIDIG  151 (473)
T ss_pred             -cCCCHHHCccccEEEecchh-hhhhHHHHHHHHHHhcC--CEEEEccCCCHHHHHhccCccHHHHhhhhCCeEEEEEeC
Confidence             56665 1 223455554433 33333444444444333  22222     13466666665      1  233446999


Q ss_pred             CCceEEEEeecCeeccccc
Q 020526          144 HGKIDIAPVIEGAVQHIAS  162 (325)
Q Consensus       144 ~~~t~v~pv~~G~~i~~~~  162 (325)
                      +++|.++-+-+|.++..+.
T Consensus       152 GGTtN~avf~~G~v~~T~c  170 (473)
T PF06277_consen  152 GGTTNIAVFDNGEVIDTAC  170 (473)
T ss_pred             CCceeEEEEECCEEEEEEE
Confidence            9999999999999987653

The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.

>PRK13318 pantothenate kinase; Reviewed

Probab=91.55  E-value=6  Score=35.06  Aligned_cols=16  Identities=19%  Similarity=0.148  Sum_probs=14.8

Q ss_pred             eEEEEcCCCcEEEeee
Q 020526            3 AAVVDAGSKLLKAGPA   18 (325)
Q Consensus         3 ~vViD~Gs~~~k~G~a   18 (325)
                      .+.||+|..++|+|+.
T Consensus         2 iL~IDIGnT~iK~al~   17 (258)
T PRK13318          2 LLAIDVGNTNTVFGLY   17 (258)
T ss_pred             EEEEEECCCcEEEEEE
Confidence            4789999999999998

>PRK13326 pantothenate kinase; Reviewed

Probab=90.62  E-value=6.9  Score=34.87  Aligned_cols=16  Identities=13%  Similarity=0.227  Sum_probs=14.8

Q ss_pred             eEEEEcCCCcEEEeee
Q 020526            3 AAVVDAGSKLLKAGPA   18 (325)
Q Consensus         3 ~vViD~Gs~~~k~G~a   18 (325)
                      -++||+|-.++|+|+.
T Consensus         8 ~L~IDiGNT~ik~glf   23 (262)
T PRK13326          8 QLIIDIGNTSISFALY   23 (262)
T ss_pred             EEEEEeCCCeEEEEEE
Confidence            3799999999999999

>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3

Probab=90.30  E-value=0.34  Score=43.89  Aligned_cols=34  Identities=24%  Similarity=0.278  Sum_probs=23.4

Q ss_pred             hhh-hcCCceEEEEEcCCCceEEEEeecCeecccc
Q 020526          128 SLY-AVGRISGCTVDIGHGKIDIAPVIEGAVQHIA  161 (325)
Q Consensus       128 a~~-~~g~~tglVVdiG~~~t~v~pv~~G~~i~~~  161 (325)
                      +++ ..|..++++||||..+|.|.+|.||.+....
T Consensus        69 a~~~~~g~~~~i~vDmGGTTtDi~~i~~G~p~~~~  103 (290)
T PF01968_consen   69 AAARLTGLENAIVVDMGGTTTDIALIKDGRPEISS  103 (290)
T ss_dssp             HHH--HT-SSEEEEEE-SS-EEEEEEETTEE----
T ss_pred             hhhhcCCCCCEEEEeCCCCEEEEEEEECCeeeccc
Confidence            444 5588999999999999999999999996443

5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.

>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]

Probab=89.89  E-value=3.4  Score=36.53  Aligned_cols=18  Identities=11%  Similarity=0.117  Sum_probs=15.5

Q ss_pred             eEEEEcCCCcEEEeeeCCC
Q 020526            3 AAVVDAGSKLLKAGPAIPD   21 (325)
Q Consensus         3 ~vViD~Gs~~~k~G~a~gd   21 (325)
                      -++||+|-.++++|.- .+
T Consensus         2 ~L~iDiGNT~~~~a~~-~~   19 (251)
T COG1521           2 LLLIDIGNTRIVFALY-EG   19 (251)
T ss_pred             eEEEEeCCCeEEEEEe-cC
Confidence            3789999999999999 43

>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]

Probab=88.61  E-value=5.5  Score=35.79  Aligned_cols=221  Identities=19%  Similarity=0.218  Sum_probs=126.7

Q ss_pred             HHHHHHHHHHHHhccCCCC-CCCceEEEEcCCCCCHHHHHHHHHHhhhhcC--CCeEEEechhhhhhhhc--CCceEEEE
Q 020526           66 DAMEDLLHHVLYAGLGWEE-GNEGQILFTDPLCSPKAVREQLVQLMFETFN--ISGFYSSEQAVLSLYAV--GRISGCTV  140 (325)
Q Consensus        66 ~~~~~il~~~~~~~l~~~~-~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~--~~~v~~~~~~~~a~~~~--g~~tglVV  140 (325)
                      +.++..++.++.+ -++++ +--+.+.+.-+-...++..+++.+.+=.+|-  +..+++..++.+++++.  |...|+|+
T Consensus        47 ~rie~~i~~A~~k-~g~d~~~~lr~lgL~lSg~d~e~~~~~lv~~~R~~fps~ae~~~v~sDa~~sl~a~t~g~~~GiVL  125 (336)
T KOG1794|consen   47 SRIEDMIREAKEK-AGWDKKGPLRSLGLGLSGTDQEDKNRKLVTEFRDKFPSVAENFYVTSDADGSLAAATPGGEGGIVL  125 (336)
T ss_pred             HHHHHHHHHHHhh-cCCCccCccceeeeecccCCchhHHHHHHHHHHHhccchhheeeeehhHHHHHhhcCCCCCCcEEE
Confidence            3577888888754 45555 1236777777777777777888877766552  34578888888888876  56999999


Q ss_pred             EcCCCceEEEEeecCeeccccceeecCcch-hch-----------hhh---cccC---------CcceEECCCCcEEEec
Q 020526          141 DIGHGKIDIAPVIEGAVQHIASRRFEVGDE-LAY-----------EKT---QKSC---------EIEQHTLPDGQVIRIG  196 (325)
Q Consensus       141 diG~~~t~v~pv~~G~~i~~~~~~~~~ge~-~~~-----------~~~---~~~~---------~~~~~~lpd~~~i~l~  196 (325)
                      =.|.++..-.-.-||..-......--+|.- ..|           ...   ++..         -.+.|.++|...+  .
T Consensus       126 iaGTgs~crl~~~DGs~~~~ggwg~~iGd~GSaywia~~Avq~vfda~dg~e~~~~~i~~v~~tif~~~~l~d~l~m--l  203 (336)
T KOG1794|consen  126 IAGTGSNCRLVNPDGSEKGAGGWGHMIGDGGSAYWIARQAVQMVFDAEDGFENMMDKIKDVKQTIFKHFNLRDRLQM--L  203 (336)
T ss_pred             EecCCceeEEECCCCCccCCCCCCCccCCCcchhhhhhhhhhheeehhcCcccccchHHHHHHHHHHHcCCCCHHHH--H
Confidence            999988888777787655444433333310 111           000   0000         0133444432110  0


Q ss_pred             ceeeccc----cccccCCCCCC--------------cCCcHHHHHHHHHHhCChHHHHhccccEEEecCCC-CccchHHH
Q 020526          197 KERYTVG----EALFQPSILGL--------------EAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTT-SMTGFEDR  257 (325)
Q Consensus       197 ~e~~~~~----E~lF~p~~~~~--------------~~~~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s-~~~G~~~r  257 (325)
                      ..+|.=+    =+.|-+++...              ....|..+|..+++++|++.++---=.|+++||.- .-..+.+-
T Consensus       204 ~~~Ys~f~k~riA~f~~kla~~ae~Gd~~~~~ifr~Ag~~Lg~~V~aVl~~l~~~~k~g~~l~Iv~vG~V~~Sw~~l~~G  283 (336)
T KOG1794|consen  204 EHLYSDFDKHRIALFTEKLAEHAEIGDPLSAEIFRNAGETLGRHVVAVLPQLPPTLKKGKTLPIVCVGGVFDSWDLLQEG  283 (336)
T ss_pred             HHHHhcchHHHHHHHHHHHHhhhhccCHHHHHHHHHHHHHHHHHHHHHHhhcCchhcccCcceEEEEcchhhHHHHHHHH
Confidence            0011000    01222221111              12457788899999999988885333599999954 46667777


Q ss_pred             HHHhhccCCCCcceEEeCCCCCCCCCCCceeeeehhhhhhc
Q 020526          258 FQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAK  298 (325)
Q Consensus       258 l~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~  298 (325)
                      +..+|+....--+++.+.         ++.++=.||+++|.
T Consensus       284 fl~sls~~~~f~~~~l~~---------~k~ssAvgAA~laa  315 (336)
T KOG1794|consen  284 FLDSLSDTRGFERVELYR---------PKESSAVGAAILAA  315 (336)
T ss_pred             HHHHhhcccCccceEEEe---------ecccchHHHHHHhh
Confidence            777772111111334432         34566678777765

>PRK13317 pantothenate kinase; Provisional

Probab=86.50  E-value=0.98  Score=40.63  Aligned_cols=71  Identities=24%  Similarity=0.258  Sum_probs=47.5

Q ss_pred             cHHHHHHHHHHhCChH-HHHhccccEEEec-CCCCccchHHHHHHhhccCCCCcceEEeCCCCCCCCCCCceeeeehhhh
Q 020526          218 GIVEQLVHTISTVSSE-NHRQLLENTVLCG-GTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAI  295 (325)
Q Consensus       218 ~i~~~I~~~i~~~~~d-~r~~l~~nIil~G-G~s~~~G~~~rl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si  295 (325)
                      +|..+|.+.|..+..- .|..-.++|+++| |.+..|++.++|.+.+.+.    ..+++-+++      +++..=+||++
T Consensus       201 sl~~~v~~~I~~lA~~~ar~~~~~~Ivf~G~gla~n~~l~~~l~~~l~~~----~~~~~~p~~------~~~~gAlGAaL  270 (277)
T PRK13317        201 GVIGLVGEVITTLSIQAAREKNIENIVYIGSTLTNNPLLQEIIESYTKLR----NCTPIFLEN------GGYSGAIGALL  270 (277)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCeEEEECcccccCHHHHHHHHHHHhcC----CceEEecCC------CchhHHHHHHH
Confidence            5555555555544221 2334457999999 7999999999999877332    234444444      67888899988


Q ss_pred             hhc
Q 020526          296 LAK  298 (325)
Q Consensus       296 ~a~  298 (325)
                      ++.
T Consensus       271 ~a~  273 (277)
T PRK13317        271 LAT  273 (277)
T ss_pred             Hhh
Confidence            875

>PRK13324 pantothenate kinase; Reviewed

Probab=86.47  E-value=21  Score=31.80  Aligned_cols=16  Identities=25%  Similarity=0.364  Sum_probs=14.8

Q ss_pred             eEEEEcCCCcEEEeee
Q 020526            3 AAVVDAGSKLLKAGPA   18 (325)
Q Consensus         3 ~vViD~Gs~~~k~G~a   18 (325)
                      -+.||+|-.++|+|+.
T Consensus         2 iL~iDiGNT~ik~gl~   17 (258)
T PRK13324          2 LLVMDMGNSHIHIGVF   17 (258)
T ss_pred             EEEEEeCCCceEEEEE
Confidence            5789999999999998

>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length

Probab=86.33  E-value=3.3  Score=38.13  Aligned_cols=31  Identities=19%  Similarity=0.206  Sum_probs=26.8

Q ss_pred             cCCceEEEEEcCCCceEEEEeecCeeccccc
Q 020526          132 VGRISGCTVDIGHGKIDIAPVIEGAVQHIAS  162 (325)
Q Consensus       132 ~g~~tglVVdiG~~~t~v~pv~~G~~i~~~~  162 (325)
                      +...+-++||+|++.|.++.|.+|+++..--
T Consensus       151 y~~~nfIlvEiG~~yta~iaV~~GkIVDGig  181 (343)
T PF07318_consen  151 YREVNFILVEIGSGYTAAIAVKNGKIVDGIG  181 (343)
T ss_pred             cccceEEEEEccCCceEEEEEECCeEEcccc
Confidence            4456999999999999999999999987543

The function of this family is unknown.

>PRK13320 pantothenate kinase; Reviewed

Probab=86.27  E-value=22  Score=31.35  Aligned_cols=16  Identities=25%  Similarity=0.258  Sum_probs=14.7

Q ss_pred             eEEEEcCCCcEEEeee
Q 020526            3 AAVVDAGSKLLKAGPA   18 (325)
Q Consensus         3 ~vViD~Gs~~~k~G~a   18 (325)
                      -+.||+|-.++|+|+-
T Consensus         4 ~L~iDiGNT~ik~~~~   19 (244)
T PRK13320          4 NLVIDIGNTTTKLAVF   19 (244)
T ss_pred             EEEEEeCCCcEEEEEE
Confidence            4789999999999998

>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway

Probab=82.20  E-value=26  Score=29.82  Aligned_cols=15  Identities=20%  Similarity=0.253  Sum_probs=13.4

Q ss_pred             EEEEcCCCcEEEeee
Q 020526            4 AVVDAGSKLLKAGPA   18 (325)
Q Consensus         4 vViD~Gs~~~k~G~a   18 (325)
                      ++||+|-.++|+|+-
T Consensus         2 L~iDiGNT~ik~~~~   16 (206)
T PF03309_consen    2 LLIDIGNTRIKWALF   16 (206)
T ss_dssp             EEEEE-SSEEEEEEE
T ss_pred             EEEEECCCeEEEEEE
Confidence            789999999999999

CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	325
3mn5_A	359	Structures Of Actin-Bound Wh2 Domains Of Spire And		2e-54
1c0f_A	368	Crystal Structure Of Dictyostelium Caatp-Actin In C		1e-53
4efh_A	375	Acanthamoeba Actin Complex With Spir Domain D Lengt		3e-53
2oan_A	375	Structure Of Oxidized Beta-Actin Length = 375		3e-53
3u4l_A	375	Cryocooled Bovine Profilin:actin Crystal Structure		5e-53
3byh_A	374	Model Of Actin-Fimbrin Abd2 Complex Length = 374		5e-53
2btf_A	375	The Structure Of Crystalline Profilin-Beta-Actin Le		6e-53
3a5m_C	375	Crystal Structure Of A Dictyostelium P109i Mg2+-Act		7e-53
1lcu_A	371	Polylysine Induces An Antiparallel Actin Dimer That		1e-52
1d4x_A	375	Crystal Structure Of Caenorhabditis Elegans Mg-Atp		1e-52
3a5l_C	375	Crystal Structure Of A Dictyostelium P109a Mg2+-Act		2e-52
3ci5_A	375	Complex Of Phosphorylated Dictyostelium Discoideum		2e-52
1dej_A	375	Crystal Structure Of A DictyosteliumTETRAHYMENA CHI		2e-52
3chw_A	375	Complex Of Dictyostelium Discoideum Actin With Prof		3e-52
1c0g_A	375	Crystal Structure Of 1:1 Complex Between Gelsolin S		4e-52
2hf3_A	374	Crystal Structure Of Monomeric Actin In The Adp Bou		4e-52
1yvn_A	375	The Yeast Actin Val 159 Asn Mutant Complex With Hum		4e-52
3eks_A	375	Crystal Structure Of Monomeric Actin Bound To Cytoc		5e-52
1nlv_A	375	Crystal Structure Of Dictyostelium Discoideum Actin		6e-52
1yag_A	375	Structure Of The Yeast Actin-human Gelsolin Segment		1e-51
1t44_A	370	Structural Basis Of Actin Sequestration By Thymosin		1e-51
1kxp_A	375	Crystal Structure Of Human Vitamin D-binding Protei		1e-51
4b1v_A	376	Structure Of The Phactr1 Rpel-N Domain Bound To G-A		1e-51
1ijj_A	377	The X-Ray Crystal Structure Of The Complex Between		1e-51
2gwj_A	371	Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form		1e-51
1eqy_A	377	Complex Between Rabbit Muscle Alpha-Actin: Human Ge		2e-51
3g37_O	376	Cryo-Em Structure Of Actin Filament In The Presence		2e-51
1qz5_A	375	Structure Of Rabbit Actin In Complex With Kabiramid		2e-51
3w3d_A	374	Crystal Structure Of Smooth Muscle G Actin Dnase I		5e-51
2w49_D	372	Isometrically Contracting Insect Asynchronous Fligh		5e-49
1atn_A	373	Atomic Structure Of The Actin:dnase I Complex Lengt		5e-49
3b63_L	365	Actin Filament Model In The Extended Form Of Acroms		7e-49
3b63_A	365	Actin Filament Model In The Extended Form Of Acroms		1e-48
3m6g_A	371	Crystal Structure Of Actin In Complex With Lobophor		2e-48
3b63_C	365	Actin Filament Model In The Extended Form Of Acroms		2e-48
3b63_B	364	Actin Filament Model In The Extended Form Of Acroms		1e-47
3b63_E	365	Actin Filament Model In The Extended Form Of Acroms		2e-47
3b63_D	357	Actin Filament Model In The Extended Form Of Acroms		1e-44
3b63_F	357	Actin Filament Model In The Extended Form Of Acroms		2e-43
2p9k_B	394	Crystal Structure Of Bovine Arp23 COMPLEX CO-Crysta		6e-33
1k8k_B	394	Crystal Structure Of Arp23 COMPLEX Length = 394		2e-32
1k8k_A	418	Crystal Structure Of Arp23 COMPLEX Length = 418		5e-17
3dwl_A	427	Crystal Structure Of Fission Yeast Arp2/3 Complex L		3e-14
3qb0_A	498	Crystal Structure Of Actin-Related Protein Arp4 Fro		3e-08
4i6m_B	439	Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex		2e-06

>pdb|3MN5|A Chain A, Structures Of Actin-Bound Wh2 Domains Of Spire And The Implication For Filament Nucleation Length = 359

Iteration: 1
 Score =  209 bits (531), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 138/367 (37%), Positives = 180/367 (49%), Gaps = 58/367 (15%)
Query: 3   AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTVDPVVRGFI 62
           A V D GS L+KAG A  D AP  V PS + RV ++  S     TL       P+  G I
Sbjct: 7   ALVCDNGSGLVKAGFA-GDDAPRAVFPSIVGRVGDEAQSKRGILTLKY-----PIEHGII 60
Query: 63  RDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSS 122
            +WD ME + HH  Y  L         +L   PL +PKA RE++ Q+MFETFN+   Y +
Sbjct: 61  TNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPL-NPKANREKMTQIMFETFNVPAMYVA 119
Query: 123 EQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG-AVQHIASR------------------ 163
            QAVLSLYA GR +G  +D G G     P+ EG A+ H   R                  
Sbjct: 120 IQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTE 179
Query: 164 ------------------------RFEVGDELAYEKTQKSCEIEQHTLPDGQVIRIGKER 199
                                     +  +E+A   +  S E + + LPDGQVI IG ER
Sbjct: 180 RGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLE-KSYELPDGQVITIGNER 238
Query: 200 YTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQ 259
           +   E LFQPS +G+E+ GI E   ++I     +  + L  N V+ GGTT   G  DR Q
Sbjct: 239 FRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQ 298
Query: 260 KE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPS 318
           KE   L  S ++  ++ PPE        YS WIGG+ILA +   Q   ITK +YDE+GPS
Sbjct: 299 KEITALAPSTMKIKIIAPPERK------YSVWIGGSILASLSTFQQMWITKQEYDEAGPS 352
Query: 319 VVHRKCF 325
           +VHRKCF
Sbjct: 353 IVHRKCF 359

>pdb|1C0F|A Chain A, Crystal Structure Of Dictyostelium Caatp-Actin In Complex With Gelsolin Segment 1 Length = 368

Iteration: 1
 Score =  206 bits (524), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 138/372 (37%), Positives = 184/372 (49%), Gaps = 55/372 (14%)
Query: 1   MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSV--DNSTLVEDVTV--DP 56
           ++A V+D GS + KAG A  D AP  V PS + R    G  S   D +     +     P
Sbjct: 5   VQALVIDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHTGKDSYVGDEAQSKRGILTLKYP 63
Query: 57  VVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNI 116
           +  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN 
Sbjct: 64  IEXGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNT 122
Query: 117 SGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG-AVQH------IASRRF---- 165
              Y + QAVLSLYA GR +G  +D G G     P+ EG A+ H      +A R      
Sbjct: 123 PAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYM 182
Query: 166 ---------------------EVGDELAYEKTQKSCEIE----------QHTLPDGQVIR 194
                                ++ ++LAY       E++           + LPDGQVI 
Sbjct: 183 MKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYELPDGQVIT 242
Query: 195 IGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGF 254
           IG ER+   EALFQPS LG+E+ GI E   ++I     +  + L  N VL GGTT   G 
Sbjct: 243 IGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGI 302
Query: 255 EDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYD 313
            DR  KE   L  S ++  ++ PPE        YS WIGG+ILA +   Q   I+K +YD
Sbjct: 303 ADRMNKELTALAPSTMKIKIIAPPERK------YSVWIGGSILASLSTFQQMWISKEEYD 356
Query: 314 ESGPSVVHRKCF 325
           ESGPS+VHRKCF
Sbjct: 357 ESGPSIVHRKCF 368

>pdb|4EFH|A Chain A, Acanthamoeba Actin Complex With Spir Domain D Length = 375

Iteration: 1
 Score =  205 bits (522), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 144/379 (37%), Positives = 185/379 (48%), Gaps = 62/379 (16%)
Query: 1   MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG--------SSSVDNSTLVEDV 52
           ++A V+D GS + KAG A  D AP  V PS + R    G         S V +    +  
Sbjct: 5   VQALVIDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRG 63
Query: 53  TVD---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQL 109
            +    P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+
Sbjct: 64  ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQI 122
Query: 110 MFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG-AVQHIASRRFEVG 168
           MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG A+ H   R    G
Sbjct: 123 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAG 182
Query: 169 DEL-----------AYEKT------------QKSC------EIEQHT------------L 187
            +L            Y  T            +K C      E E HT            L
Sbjct: 183 RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMHTAASSSALEKSYEL 242
Query: 188 PDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGG 247
           PDGQVI IG ER+   EALFQPS LG+E+ GI E   ++I     +  + L  N VL GG
Sbjct: 243 PDGQVITIGNERFRAPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGG 302
Query: 248 TTSMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQH 306
           TT   G  DR QKE   L  S ++  ++ PPE        YS WIGG+ILA +   Q   
Sbjct: 303 TTMFPGIADRMQKELTALAPSTMKIKIIAPPERK------YSVWIGGSILASLSTFQQMW 356
Query: 307 ITKADYDESGPSVVHRKCF 325
           I+K +YDESGPS+VHRKCF
Sbjct: 357 ISKEEYDESGPSIVHRKCF 375

>pdb|2OAN|A Chain A, Structure Of Oxidized Beta-Actin Length = 375

Iteration: 1
 Score =  205 bits (521), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 183/377 (48%), Gaps = 62/377 (16%)
Query: 3   AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG--------SSSVDNSTLVEDVTV 54
           A VVD GS + KAG A  D AP  V PS + R    G         S V +    +   +
Sbjct: 7   ALVVDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 65
Query: 55  D---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMF 111
               P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MF
Sbjct: 66  TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMF 124
Query: 112 ETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG-AVQHIASRRFEVGDE 170
           ETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG A+ H   R    G +
Sbjct: 125 ETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 184
Query: 171 L-----------AYEKT------------QKSCEI------------------EQHTLPD 189
           L            Y  T            +K C +                  + + LPD
Sbjct: 185 LTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPD 244
Query: 190 GQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTT 249
           GQVI IG ER+   EALFQPS LG+E+ GI E   ++I     +  + L  NTVL GGTT
Sbjct: 245 GQVITIGNERFRCPEALFQPSFLGMESXGIHETTFNSIMKCDVDIRKDLYANTVLSGGTT 304
Query: 250 SMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHIT 308
              G  DR QKE   L  S ++  ++ PPE        YS WIGG+ILA +   Q   I+
Sbjct: 305 MYPGIADRMQKEITALAPSTMKIKIIAPPERK------YSVWIGGSILASLSTFQQMWIS 358
Query: 309 KADYDESGPSVVHRKCF 325
           K +YDESGPS+VHRKCF
Sbjct: 359 KQEYDESGPSIVHRKCF 375

>pdb|3U4L|A Chain A, Cryocooled Bovine Profilin:actin Crystal Structure To 2.4 A Length = 375

Iteration: 1
 Score =  204 bits (519), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 183/377 (48%), Gaps = 62/377 (16%)
Query: 3   AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG--------SSSVDNSTLVEDVTV 54
           A VVD GS + KAG A  D AP  V PS + R    G         S V +    +   +
Sbjct: 7   ALVVDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 65
Query: 55  D---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMF 111
               P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MF
Sbjct: 66  TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMF 124
Query: 112 ETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG-AVQHIASRRFEVGDE 170
           ETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG A+ H   R    G +
Sbjct: 125 ETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 184
Query: 171 L-----------AYEKT------------QKSCEI------------------EQHTLPD 189
           L            Y  T            +K C +                  + + LPD
Sbjct: 185 LTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPD 244
Query: 190 GQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTT 249
           GQVI IG ER+   EALFQPS LG+E+ GI E   ++I     +  + L  NTVL GGTT
Sbjct: 245 GQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTT 304
Query: 250 SMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHIT 308
              G  DR QKE   L  S ++  ++ PPE        YS WIGG+ILA +   Q   I+
Sbjct: 305 MYPGIADRMQKEITALAPSTMKIKIIAPPERK------YSVWIGGSILASLSTFQQMWIS 358
Query: 309 KADYDESGPSVVHRKCF 325
           K +YDESGPS+VHRKCF
Sbjct: 359 KQEYDESGPSIVHRKCF 375

>pdb|3BYH|A Chain A, Model Of Actin-Fimbrin Abd2 Complex Length = 374

Iteration: 1
 Score =  204 bits (519), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 183/377 (48%), Gaps = 62/377 (16%)
Query: 3   AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG--------SSSVDNSTLVEDVTV 54
           A VVD GS + KAG A  D AP  V PS + R    G         S V +    +   +
Sbjct: 6   ALVVDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 64
Query: 55  D---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMF 111
               P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MF
Sbjct: 65  TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMF 123
Query: 112 ETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG-AVQHIASRRFEVGDE 170
           ETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG A+ H   R    G +
Sbjct: 124 ETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 183
Query: 171 L-----------AYEKT------------QKSCEI------------------EQHTLPD 189
           L            Y  T            +K C +                  + + LPD
Sbjct: 184 LTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPD 243
Query: 190 GQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTT 249
           GQVI IG ER+   EALFQPS LG+E+ GI E   ++I     +  + L  NTVL GGTT
Sbjct: 244 GQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTT 303
Query: 250 SMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHIT 308
              G  DR QKE   L  S ++  ++ PPE        YS WIGG+ILA +   Q   I+
Sbjct: 304 MYPGIADRMQKEITALAPSTMKIKIIAPPERK------YSVWIGGSILASLSTFQQMWIS 357
Query: 309 KADYDESGPSVVHRKCF 325
           K +YDESGPS+VHRKCF
Sbjct: 358 KQEYDESGPSIVHRKCF 374

>pdb|2BTF|A Chain A, The Structure Of Crystalline Profilin-Beta-Actin Length = 375

Iteration: 1
 Score =  204 bits (519), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 183/377 (48%), Gaps = 62/377 (16%)
Query: 3   AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG--------SSSVDNSTLVEDVTV 54
           A VVD GS + KAG A  D AP  V PS + R    G         S V +    +   +
Sbjct: 7   ALVVDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 65
Query: 55  D---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMF 111
               P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MF
Sbjct: 66  TLKYPIEXGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMF 124
Query: 112 ETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG-AVQHIASRRFEVGDE 170
           ETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG A+ H   R    G +
Sbjct: 125 ETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 184
Query: 171 L-----------AYEKT------------QKSCEI------------------EQHTLPD 189
           L            Y  T            +K C +                  + + LPD
Sbjct: 185 LTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPD 244
Query: 190 GQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTT 249
           GQVI IG ER+   EALFQPS LG+E+ GI E   ++I     +  + L  NTVL GGTT
Sbjct: 245 GQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTT 304
Query: 250 SMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHIT 308
              G  DR QKE   L  S ++  ++ PPE        YS WIGG+ILA +   Q   I+
Sbjct: 305 MYPGIADRMQKEITALAPSTMKIKIIAPPERK------YSVWIGGSILASLSTFQQMWIS 358
Query: 309 KADYDESGPSVVHRKCF 325
           K +YDESGPS+VHRKCF
Sbjct: 359 KQEYDESGPSIVHRKCF 375

>pdb|3A5M|C Chain C, Crystal Structure Of A Dictyostelium P109i Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375

Iteration: 1
 Score =  204 bits (518), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 139/379 (36%), Positives = 188/379 (49%), Gaps = 62/379 (16%)
Query: 1   MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG--------SSSVDNSTLVEDV 52
           ++A V+D GS + KAG A  D AP  V PS + R    G         S V +    +  
Sbjct: 5   VQALVIDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRG 63
Query: 53  TVD---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQL 109
            +    P+  G + +WD ME + HH  Y  L      E  +L T+ + +PKA RE++ Q+
Sbjct: 64  ILTLKYPIEXGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAILNPKANREKMTQI 122
Query: 110 MFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG-AVQH------IAS 162
           MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG A+ H      +A 
Sbjct: 123 MFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAG 182
Query: 163 RRF-------------------------EVGDELAY---------EKTQKSCEIEQ-HTL 187
           R                           ++ ++LAY         +    S  +E+ + L
Sbjct: 183 RDLTDYMMKILTERGYSFTTTAAAAIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYEL 242
Query: 188 PDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGG 247
           PDGQVI IG ER+   EALFQPS LG+E+ GI E   ++I     +  + L  N VL GG
Sbjct: 243 PDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGG 302
Query: 248 TTSMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQH 306
           TT   G  DR  KE   L  S ++  ++ PPE        YS WIGG+ILA +   Q   
Sbjct: 303 TTMFPGIADRMNKELTALAPSTMKIKIIAPPERK------YSVWIGGSILASLSTFQQMW 356
Query: 307 ITKADYDESGPSVVHRKCF 325
           I+K +YDESGPS+VHRKCF
Sbjct: 357 ISKEEYDESGPSIVHRKCF 375

>pdb|1LCU|A Chain A, Polylysine Induces An Antiparallel Actin Dimer That Nucleates Filament Assembly: Crystal Structure At 3.5 A Resolution Length = 371

Iteration: 1
 Score =  203 bits (517), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 138/378 (36%), Positives = 182/378 (48%), Gaps = 64/378 (16%)
Query: 3   AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKR--------VLEDGSSSVDNSTLVEDVTV 54
           A V D GS L+KAG A  D AP  V PS + R        V+  G S V +    +   +
Sbjct: 3   ALVCDNGSGLVKAGFA-GDDAPRAVFPSIVGRPRHQGVMVVMGQGDSYVGDEAQSKRGIL 61
Query: 55  D---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMF 111
               P+  G I +WD ME + HH  Y  L         +L   PL +PKA RE++ Q+MF
Sbjct: 62  TLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPL-NPKANREKMTQIMF 120
Query: 112 ETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG-AVQHIASR------- 163
           ETFN+   Y + QAVLSLYA GR +G  +D G G     P+ EG A+ H   R       
Sbjct: 121 ETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRD 180
Query: 164 -----------------------------------RFEVGDELAYEKTQKSCEIEQHTLP 188
                                                +  +E+A   +  S E + + LP
Sbjct: 181 LTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLE-KSYELP 239
Query: 189 DGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGT 248
           DGQVI IG ER+   E LFQPS +G+E+ GI E   ++I     +  + L  N V+ GGT
Sbjct: 240 DGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGT 299
Query: 249 TSMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHI 307
           T   G  DR QKE   L  S ++  ++ PPE        YS WIGG+ILA +   Q   I
Sbjct: 300 TMYPGIADRMQKEITALAPSTMKIKIIAPPERK------YSVWIGGSILASLSTFQQMWI 353
Query: 308 TKADYDESGPSVVHRKCF 325
           TK +YDE+GPS+VHRKCF
Sbjct: 354 TKQEYDEAGPSIVHRKCF 371

>pdb|1D4X|A Chain A, Crystal Structure Of Caenorhabditis Elegans Mg-Atp Actin Complexed With Human Gelsolin Segment 1 At 1.75 A Resolution Length = 375

Iteration: 1
 Score =  202 bits (515), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 140/377 (37%), Positives = 183/377 (48%), Gaps = 62/377 (16%)
Query: 3   AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG--------SSSVDNSTLVEDVTV 54
           A VVD GS + KAG A  D AP  V PS + R    G         S V +    +   +
Sbjct: 7   ALVVDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 65
Query: 55  D---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMF 111
               P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MF
Sbjct: 66  TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMF 124
Query: 112 ETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG-AVQHIASRRFEVGDE 170
           ETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG A+ H   R    G +
Sbjct: 125 ETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 184
Query: 171 L-----------AYEKT------------QKSCEI------------------EQHTLPD 189
           L            Y  T            +K C +                  + + LPD
Sbjct: 185 LTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPD 244
Query: 190 GQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTT 249
           GQVI +G ER+   EA+FQPS LG+E+ GI E   ++I     +  + L  NTVL GGTT
Sbjct: 245 GQVITVGNERFRCPEAMFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYANTVLSGGTT 304
Query: 250 SMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHIT 308
              G  DR QKE   L  S ++  ++ PPE        YS WIGG+ILA +   Q   I+
Sbjct: 305 MYPGIADRMQKEITALAPSTMKIKIIAPPERK------YSVWIGGSILASLSTFQQMWIS 358
Query: 309 KADYDESGPSVVHRKCF 325
           K +YDESGPS+VHRKCF
Sbjct: 359 KQEYDESGPSIVHRKCF 375

>pdb|3A5L|C Chain C, Crystal Structure Of A Dictyostelium P109a Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375

Iteration: 1
 Score =  202 bits (515), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 139/379 (36%), Positives = 187/379 (49%), Gaps = 62/379 (16%)
Query: 1   MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG--------SSSVDNSTLVEDV 52
           ++A V+D GS + KAG A  D AP  V PS + R    G         S V +    +  
Sbjct: 5   VQALVIDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRG 63
Query: 53  TVD---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQL 109
            +    P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+
Sbjct: 64  ILTLKYPIEXGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAALNPKANREKMTQI 122
Query: 110 MFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG-AVQH------IAS 162
           MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG A+ H      +A 
Sbjct: 123 MFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAG 182
Query: 163 RRF-------------------------EVGDELAY---------EKTQKSCEIEQ-HTL 187
           R                           ++ ++LAY         +    S  +E+ + L
Sbjct: 183 RDLTDYMMKILTERGYSFTTTAAAAIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYEL 242
Query: 188 PDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGG 247
           PDGQVI IG ER+   EALFQPS LG+E+ GI E   ++I     +  + L  N VL GG
Sbjct: 243 PDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGG 302
Query: 248 TTSMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQH 306
           TT   G  DR  KE   L  S ++  ++ PPE        YS WIGG+ILA +   Q   
Sbjct: 303 TTMFPGIADRMNKELTALAPSTMKIKIIAPPERK------YSVWIGGSILASLSTFQQMW 356
Query: 307 ITKADYDESGPSVVHRKCF 325
           I+K +YDESGPS+VHRKCF
Sbjct: 357 ISKEEYDESGPSIVHRKCF 375

>pdb|3CI5|A Chain A, Complex Of Phosphorylated Dictyostelium Discoideum Actin With Gelsolin Length = 375

Iteration: 1
 Score =  202 bits (514), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 139/379 (36%), Positives = 187/379 (49%), Gaps = 62/379 (16%)
Query: 1   MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG--------SSSVDNSTLVEDV 52
           ++A V+D GS + KAG A  D AP  V PS + R    G         S V +    +  
Sbjct: 5   VQALVIDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHTGVMVGMGQKDSXVGDEAQSKRG 63
Query: 53  TVD---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQL 109
            +    P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+
Sbjct: 64  ILTLKYPIEXGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQI 122
Query: 110 MFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG-AVQH------IAS 162
           MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG A+ H      +A 
Sbjct: 123 MFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAG 182
Query: 163 RRF-------------------------EVGDELAY---------EKTQKSCEIEQ-HTL 187
           R                           ++ ++LAY         +    S  +E+ + L
Sbjct: 183 RDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYEL 242
Query: 188 PDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGG 247
           PDGQVI IG ER+   EALFQPS LG+E+ GI E   ++I     +  + L  N VL GG
Sbjct: 243 PDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGG 302
Query: 248 TTSMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQH 306
           TT   G  DR  KE   L  S ++  ++ PPE        YS WIGG+ILA +   Q   
Sbjct: 303 TTMFPGIADRMNKELTALAPSTMKIKIIAPPERK------YSVWIGGSILASLSTFQQMW 356
Query: 307 ITKADYDESGPSVVHRKCF 325
           I+K +YDESGPS+VHRKCF
Sbjct: 357 ISKEEYDESGPSIVHRKCF 375

>pdb|1DEJ|A Chain A, Crystal Structure Of A DictyosteliumTETRAHYMENA CHIMERA Actin (Mutant 646: Q228kT229AA230YA231KS232EE360H) IN Complex With Human Gelsolin Segment 1 Length = 375

Iteration: 1
 Score =  202 bits (513), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 139/379 (36%), Positives = 189/379 (49%), Gaps = 62/379 (16%)
Query: 1   MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG--------SSSVDNSTLVEDV 52
           ++A V+D GS + KAG A  D AP  V PS + R    G         S V +    +  
Sbjct: 5   VQALVIDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRG 63
Query: 53  TVD---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQL 109
            +    P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+
Sbjct: 64  ILTLKYPIEXGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQI 122
Query: 110 MFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG-AVQH------IAS 162
           MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG A+ H      +A 
Sbjct: 123 MFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAG 182
Query: 163 RRF-------------------------EVGDELAY---------EKTQKSCEIEQ-HTL 187
           R                           ++ ++LAY         +  ++S  +E+ + L
Sbjct: 183 RDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMKAYKESSALEKSYEL 242
Query: 188 PDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGG 247
           PDGQVI IG ER+   EALFQPS LG+E+ GI E   ++I     +  + L  N VL GG
Sbjct: 243 PDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGG 302
Query: 248 TTSMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQH 306
           TT   G  DR  KE   L  S ++  ++ PPE        YS WIGG+ILA +   Q   
Sbjct: 303 TTMFPGIADRMNKELTALAPSTMKIKIIAPPE------RKYSVWIGGSILASLSTFQQMW 356
Query: 307 ITKADYDESGPSVVHRKCF 325
           I+K +YDESGPS+VHRKCF
Sbjct: 357 ISKHEYDESGPSIVHRKCF 375

>pdb|3CHW|A Chain A, Complex Of Dictyostelium Discoideum Actin With Profilin And The Last Poly-Pro Of Human Vasp Length = 375

Iteration: 1
 Score =  201 bits (512), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 139/379 (36%), Positives = 187/379 (49%), Gaps = 62/379 (16%)
Query: 1   MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG--------SSSVDNSTLVEDV 52
           ++A V+D GS + KAG A  D AP  V PS + R    G         S V +    +  
Sbjct: 5   VQALVIDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRG 63
Query: 53  TVD---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQL 109
            +    P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+
Sbjct: 64  ILTLKYPIEXGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQI 122
Query: 110 MFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG-AVQH------IAS 162
           MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG A+ H      +A 
Sbjct: 123 MFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAG 182
Query: 163 RRF-------------------------EVGDELAY---------EKTQKSCEIEQ-HTL 187
           R                           ++ ++LAY         +    S  +E+ + L
Sbjct: 183 RDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYEL 242
Query: 188 PDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGG 247
           PDGQVI IG ER+   EALFQPS LG+E+ GI E   ++I     +  + L  N VL GG
Sbjct: 243 PDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGG 302
Query: 248 TTSMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQH 306
           TT   G  DR  KE   L  S ++  ++ PPE        YS WIGG+ILA +   Q   
Sbjct: 303 TTMFPGIADRMNKELTALAPSTMKIKIIAPPERK------YSVWIGGSILASLSTFQQMW 356
Query: 307 ITKADYDESGPSVVHRKCF 325
           I+K +YDESGPS+VHRKCF
Sbjct: 357 ISKEEYDESGPSIVHRKCF 375

>pdb|1C0G|A Chain A, Crystal Structure Of 1:1 Complex Between Gelsolin Segment 1 And A DictyosteliumTETRAHYMENA CHIMERA ACTIN (MUTANT 228: Q228kT229AA230YE360H) Length = 375

Iteration: 1
 Score =  201 bits (512), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 138/379 (36%), Positives = 185/379 (48%), Gaps = 62/379 (16%)
Query: 1   MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG--------SSSVDNSTLVEDV 52
           ++A V+D GS + KAG A  D AP  V PS + R    G         S V +    +  
Sbjct: 5   VQALVIDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRG 63
Query: 53  TVD---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQL 109
            +    P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+
Sbjct: 64  ILTLKYPIEXGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQI 122
Query: 110 MFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG-AVQH------IAS 162
           MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG A+ H      +A 
Sbjct: 123 MFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAG 182
Query: 163 RRF-------------------------EVGDELAYEKTQKSCEIEQHT----------L 187
           R                           ++ ++LAY       E++ +           L
Sbjct: 183 RDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMKAYASSSALEKSYEL 242
Query: 188 PDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGG 247
           PDGQVI IG ER+   EALFQPS LG+E+ GI E   ++I     +  + L  N VL GG
Sbjct: 243 PDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGG 302
Query: 248 TTSMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQH 306
           TT   G  DR  KE   L  S ++  ++ PPE        YS WIGG+ILA +   Q   
Sbjct: 303 TTMFPGIADRMNKELTALAPSTMKIKIIAPPE------RKYSVWIGGSILASLSTFQQMW 356
Query: 307 ITKADYDESGPSVVHRKCF 325
           I+K +YDESGPS+VHRKCF
Sbjct: 357 ISKHEYDESGPSIVHRKCF 375

>pdb|2HF3|A Chain A, Crystal Structure Of Monomeric Actin In The Adp Bound State Length = 374

Iteration: 1
 Score =  201 bits (511), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 182/377 (48%), Gaps = 62/377 (16%)
Query: 3   AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG--------SSSVDNSTLVEDVTV 54
           A VVD GS + KAG A  D AP  V PS + R    G         S V +    +   +
Sbjct: 6   ALVVDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 64
Query: 55  D---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMF 111
               P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MF
Sbjct: 65  TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMF 123
Query: 112 ETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG-AVQHIASRRFEVGDE 170
           ETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG A+ H   R    G +
Sbjct: 124 ETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 183
Query: 171 L-----------AYEKT------------QKSCEI------------------EQHTLPD 189
           L            Y  T            +K C +                  + + L D
Sbjct: 184 LTDYLMKILTERGYSFTTTEEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELKD 243
Query: 190 GQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTT 249
           GQVI IG ER+   EALFQPS LG+EA GI E   ++I     +  + L  NTVL GGTT
Sbjct: 244 GQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTT 303
Query: 250 SMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHIT 308
              G  DR QKE   L  S ++  ++ PPE        YS WIGG+ILA +   Q   I+
Sbjct: 304 MYPGIADRMQKEITALAPSTMKIKIIAPPERK------YSVWIGGSILASLSTFQQMWIS 357
Query: 309 KADYDESGPSVVHRKCF 325
           K +YDESGPS+VHRKCF
Sbjct: 358 KQEYDESGPSIVHRKCF 374

>pdb|1YVN|A Chain A, The Yeast Actin Val 159 Asn Mutant Complex With Human Gelsolin Segment 1 Length = 375

Iteration: 1
 Score =  201 bits (511), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 134/377 (35%), Positives = 187/377 (49%), Gaps = 62/377 (16%)
Query: 3   AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG--------SSSVDNSTLVEDVTV 54
           A V+D GS + KAG A  D AP  V PS + R    G         S V +    +   +
Sbjct: 7   ALVIDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHQGIMVGMGQKDSYVGDEAQSKRGIL 65
Query: 55  D---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMF 111
               P+  G + +WD ME + HH  Y  L      E  +L T+   +PK+ RE++ Q+MF
Sbjct: 66  TLRYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPMNPKSNREKMTQIMF 124
Query: 112 ETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG---------------- 155
           ETFN+  FY S QAVLSLY+ GR +G  +D G G   + P+  G                
Sbjct: 125 ETFNVPAFYVSIQAVLSLYSSGRTTGIVLDSGDGNTHVVPIYAGFSLPHAILRIDLAGRD 184
Query: 156 ---AVQHIASRR-------------FEVGDELAY---------EKTQKSCEIEQ-HTLPD 189
               +  I S R              ++ ++L Y         +   +S  IE+ + LPD
Sbjct: 185 LTDYLMKILSERGYSFSTTAEREIVRDIKEKLCYVALDFEQEMQTAAQSSSIEKSYELPD 244
Query: 190 GQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTT 249
           GQVI IG ER+   EALF PS+LGLE+ GI +   ++I     +  ++L  N V+ GGTT
Sbjct: 245 GQVITIGNERFRAPEALFHPSVLGLESAGIDQTTYNSIMKCDVDVRKELYGNIVMSGGTT 304
Query: 250 SMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHIT 308
              G  +R QKE   L  S+++  ++ PPE        YS WIGG+ILA +   Q   I+
Sbjct: 305 MFPGIAERMQKEITALAPSSMKVKIIAPPERK------YSVWIGGSILASLTTFQQMWIS 358
Query: 309 KADYDESGPSVVHRKCF 325
           K +YDESGPS+VH KCF
Sbjct: 359 KQEYDESGPSIVHHKCF 375

>pdb|3EKS|A Chain A, Crystal Structure Of Monomeric Actin Bound To Cytochalasin D Length = 375

Iteration: 1
 Score =  201 bits (511), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 182/377 (48%), Gaps = 62/377 (16%)
Query: 3   AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG--------SSSVDNSTLVEDVTV 54
           A VVD GS + KAG A  D AP  V PS + R    G         S V +    +   +
Sbjct: 7   ALVVDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 65
Query: 55  D---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMF 111
               P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MF
Sbjct: 66  TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMF 124
Query: 112 ETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG-AVQHIASRRFEVGDE 170
           ETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG A+ H   R    G +
Sbjct: 125 ETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 184
Query: 171 L-----------AYEKT------------QKSCEI------------------EQHTLPD 189
           L            Y  T            +K C +                  + + L D
Sbjct: 185 LTDYLMKILTERGYSFTTTEEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELKD 244
Query: 190 GQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTT 249
           GQVI IG ER+   EALFQPS LG+EA GI E   ++I     +  + L  NTVL GGTT
Sbjct: 245 GQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTT 304
Query: 250 SMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHIT 308
              G  DR QKE   L  S ++  ++ PPE        YS WIGG+ILA +   Q   I+
Sbjct: 305 MYPGIADRMQKEITALAPSTMKIKIIAPPERK------YSVWIGGSILASLSTFQQMWIS 358
Query: 309 KADYDESGPSVVHRKCF 325
           K +YDESGPS+VHRKCF
Sbjct: 359 KQEYDESGPSIVHRKCF 375

>pdb|1NLV|A Chain A, Crystal Structure Of Dictyostelium Discoideum Actin Complexed With Ca Atp And Human Gelsolin Segment 1 Length = 375

Iteration: 1
 Score =  201 bits (510), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 139/379 (36%), Positives = 186/379 (49%), Gaps = 62/379 (16%)
Query: 1   MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG--------SSSVDNSTLVEDV 52
           ++A V+D GS + KAG A  D AP  V PS + R    G         S V +    +  
Sbjct: 5   VQALVIDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRG 63
Query: 53  TVD---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQL 109
            +    P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+
Sbjct: 64  ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQI 122
Query: 110 MFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG-AVQH------IAS 162
           MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG A+ H      +A 
Sbjct: 123 MFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAG 182
Query: 163 RRF-------------------------EVGDELAY---------EKTQKSCEIEQ-HTL 187
           R                           ++ ++LAY              S  +E+ + L
Sbjct: 183 RDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEQEMATAASSSALEKSYEL 242
Query: 188 PDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGG 247
           PDGQVI IG ER+   EALFQPS LG+E+ GI E   ++I     +  + L  N VL GG
Sbjct: 243 PDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGG 302
Query: 248 TTSMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQH 306
           TT   G  DR  KE   L  S ++  ++ PPE        YS WIGG+ILA +   Q   
Sbjct: 303 TTMFPGIADRMNKELTALAPSTMKIKIIAPPERK------YSVWIGGSILASLSTFQQMW 356
Query: 307 ITKADYDESGPSVVHRKCF 325
           I+K +YDESGPS+VHRKCF
Sbjct: 357 ISKEEYDESGPSIVHRKCF 375

>pdb|1YAG|A Chain A, Structure Of The Yeast Actin-human Gelsolin Segment 1 Complex Length = 375

Iteration: 1
 Score =  200 bits (508), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 134/377 (35%), Positives = 187/377 (49%), Gaps = 62/377 (16%)
Query: 3   AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG--------SSSVDNSTLVEDVTV 54
           A V+D GS + KAG A  D AP  V PS + R    G         S V +    +   +
Sbjct: 7   ALVIDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHQGIMVGMGQKDSYVGDEAQSKRGIL 65
Query: 55  D---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMF 111
               P+  G + +WD ME + HH  Y  L      E  +L T+   +PK+ RE++ Q+MF
Sbjct: 66  TLRYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPMNPKSNREKMTQIMF 124
Query: 112 ETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG---------------- 155
           ETFN+  FY S QAVLSLY+ GR +G  +D G G   + P+  G                
Sbjct: 125 ETFNVPAFYVSIQAVLSLYSSGRTTGIVLDSGDGVTHVVPIYAGFSLPHAILRIDLAGRD 184
Query: 156 ---AVQHIASRR-------------FEVGDELAY---------EKTQKSCEIEQ-HTLPD 189
               +  I S R              ++ ++L Y         +   +S  IE+ + LPD
Sbjct: 185 LTDYLMKILSERGYSFSTTAEREIVRDIKEKLCYVALDFEQEMQTAAQSSSIEKSYELPD 244
Query: 190 GQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTT 249
           GQVI IG ER+   EALF PS+LGLE+ GI +   ++I     +  ++L  N V+ GGTT
Sbjct: 245 GQVITIGNERFRAPEALFHPSVLGLESAGIDQTTYNSIMKCDVDVRKELYGNIVMSGGTT 304
Query: 250 SMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHIT 308
              G  +R QKE   L  S+++  ++ PPE        YS WIGG+ILA +   Q   I+
Sbjct: 305 MFPGIAERMQKEITALAPSSMKVKIIAPPERK------YSVWIGGSILASLTTFQQMWIS 358
Query: 309 KADYDESGPSVVHRKCF 325
           K +YDESGPS+VH KCF
Sbjct: 359 KQEYDESGPSIVHHKCF 375

>pdb|1T44|A Chain A, Structural Basis Of Actin Sequestration By Thymosin-B4: Implications For Arp23 ACTIVATION Length = 370

Iteration: 1
 Score =  199 bits (507), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 137/378 (36%), Positives = 180/378 (47%), Gaps = 64/378 (16%)
Query: 3   AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG--------SSSVDNSTLVEDVTV 54
           A V D GS L+KAG A  D AP  V PS + R    G         S V +    +   +
Sbjct: 2   ALVCDNGSGLVKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 60
Query: 55  D---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMF 111
               P+  G I +WD ME + HH  Y  L         +L   PL +PKA RE++ Q+MF
Sbjct: 61  TLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPL-NPKANREKMTQIMF 119
Query: 112 ETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG-AVQHIASR------- 163
           ETFN+   Y + QAVLSLYA GR +G  +D G G     P+ EG A+ H   R       
Sbjct: 120 ETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRD 179
Query: 164 -----------------------------------RFEVGDELAYEKTQKSCEIEQHTLP 188
                                                +  +E+A   +  S E + + LP
Sbjct: 180 LTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLE-KSYELP 238
Query: 189 DGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGT 248
           DGQVI IG ER+   E LFQPS +G+E+ GI E   ++I     +  + L  N V+ GGT
Sbjct: 239 DGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGT 298
Query: 249 TSMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHI 307
           T   G  DR QKE   L  S ++  ++ PPE        YS WIGG+ILA +   Q   I
Sbjct: 299 TMYPGIADRMQKEITALAPSTMKIKIIAPPERK------YSVWIGGSILASLSTFQQMWI 352
Query: 308 TKADYDESGPSVVHRKCF 325
           TK +YDE+GPS+VHRKCF
Sbjct: 353 TKQEYDEAGPSIVHRKCF 370

>pdb|1KXP|A Chain A, Crystal Structure Of Human Vitamin D-binding Protein In Complex With Skeletal Actin Length = 375

Iteration: 1
 Score =  199 bits (507), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 137/378 (36%), Positives = 180/378 (47%), Gaps = 64/378 (16%)
Query: 3   AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG--------SSSVDNSTLVEDVTV 54
           A V D GS L+KAG A  D AP  V PS + R    G         S V +    +   +
Sbjct: 7   ALVCDNGSGLVKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 65
Query: 55  D---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMF 111
               P+  G I +WD ME + HH  Y  L         +L   PL +PKA RE++ Q+MF
Sbjct: 66  TLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPL-NPKANREKMTQIMF 124
Query: 112 ETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG-AVQHIASR------- 163
           ETFN+   Y + QAVLSLYA GR +G  +D G G     P+ EG A+ H   R       
Sbjct: 125 ETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRD 184
Query: 164 -----------------------------------RFEVGDELAYEKTQKSCEIEQHTLP 188
                                                +  +E+A   +  S E + + LP
Sbjct: 185 LTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLE-KSYELP 243
Query: 189 DGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGT 248
           DGQVI IG ER+   E LFQPS +G+E+ GI E   ++I     +  + L  N V+ GGT
Sbjct: 244 DGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGT 303
Query: 249 TSMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHI 307
           T   G  DR QKE   L  S ++  ++ PPE        YS WIGG+ILA +   Q   I
Sbjct: 304 TMYPGIADRMQKEITALAPSTMKIKIIAPPERK------YSVWIGGSILASLSTFQQMWI 357
Query: 308 TKADYDESGPSVVHRKCF 325
           TK +YDE+GPS+VHRKCF
Sbjct: 358 TKQEYDEAGPSIVHRKCF 375

>pdb|4B1V|A Chain A, Structure Of The Phactr1 Rpel-N Domain Bound To G-Actin Length = 376

Iteration: 1
 Score =  199 bits (507), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 137/378 (36%), Positives = 180/378 (47%), Gaps = 64/378 (16%)
Query: 3   AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG--------SSSVDNSTLVEDVTV 54
           A V D GS L+KAG A  D AP  V PS + R    G         S V +    +   +
Sbjct: 8   ALVCDNGSGLVKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 66
Query: 55  D---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMF 111
               P+  G I +WD ME + HH  Y  L         +L   PL +PKA RE++ Q+MF
Sbjct: 67  TLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPL-NPKANREKMTQIMF 125
Query: 112 ETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG-AVQHIASR------- 163
           ETFN+   Y + QAVLSLYA GR +G  +D G G     P+ EG A+ H   R       
Sbjct: 126 ETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRD 185
Query: 164 -----------------------------------RFEVGDELAYEKTQKSCEIEQHTLP 188
                                                +  +E+A   +  S E + + LP
Sbjct: 186 LTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLE-KSYELP 244
Query: 189 DGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGT 248
           DGQVI IG ER+   E LFQPS +G+E+ GI E   ++I     +  + L  N V+ GGT
Sbjct: 245 DGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGT 304
Query: 249 TSMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHI 307
           T   G  DR QKE   L  S ++  ++ PPE        YS WIGG+ILA +   Q   I
Sbjct: 305 TMYPGIADRMQKEITALAPSTMKIKIIAPPERK------YSVWIGGSILASLSTFQQMWI 358
Query: 308 TKADYDESGPSVVHRKCF 325
           TK +YDE+GPS+VHRKCF
Sbjct: 359 TKQEYDEAGPSIVHRKCF 376

>pdb|1IJJ|A Chain A, The X-Ray Crystal Structure Of The Complex Between Rabbit Skeletal Muscle Actin And Latrunculin A At 2.85 A Resolution Length = 377

Iteration: 1
 Score =  199 bits (507), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 137/378 (36%), Positives = 180/378 (47%), Gaps = 64/378 (16%)
Query: 3   AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG--------SSSVDNSTLVEDVTV 54
           A V D GS L+KAG A  D AP  V PS + R    G         S V +    +   +
Sbjct: 9   ALVCDNGSGLVKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 67
Query: 55  D---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMF 111
               P+  G I +WD ME + HH  Y  L         +L   PL +PKA RE++ Q+MF
Sbjct: 68  TLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPL-NPKANREKMTQIMF 126
Query: 112 ETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG-AVQHIASR------- 163
           ETFN+   Y + QAVLSLYA GR +G  +D G G     P+ EG A+ H   R       
Sbjct: 127 ETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRD 186
Query: 164 -----------------------------------RFEVGDELAYEKTQKSCEIEQHTLP 188
                                                +  +E+A   +  S E + + LP
Sbjct: 187 LTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLE-KSYELP 245
Query: 189 DGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGT 248
           DGQVI IG ER+   E LFQPS +G+E+ GI E   ++I     +  + L  N V+ GGT
Sbjct: 246 DGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGT 305
Query: 249 TSMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHI 307
           T   G  DR QKE   L  S ++  ++ PPE        YS WIGG+ILA +   Q   I
Sbjct: 306 TMYPGIADRMQKEITALAPSTMKIKIIAPPERK------YSVWIGGSILASLSTFQQMWI 359
Query: 308 TKADYDESGPSVVHRKCF 325
           TK +YDE+GPS+VHRKCF
Sbjct: 360 TKQEYDEAGPSIVHRKCF 377

>pdb|2GWJ|A Chain A, Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form Length = 371

Iteration: 1
 Score =  199 bits (507), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 137/378 (36%), Positives = 180/378 (47%), Gaps = 64/378 (16%)
Query: 3   AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG--------SSSVDNSTLVEDVTV 54
           A V D GS L+KAG A  D AP  V PS + R    G         S V +    +   +
Sbjct: 3   ALVCDNGSGLVKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 61
Query: 55  D---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMF 111
               P+  G I +WD ME + HH  Y  L         +L   PL +PKA RE++ Q+MF
Sbjct: 62  TLKYPIEXGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPL-NPKANREKMTQIMF 120
Query: 112 ETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG-AVQHIASR------- 163
           ETFN+   Y + QAVLSLYA GR +G  +D G G     P+ EG A+ H   R       
Sbjct: 121 ETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRD 180
Query: 164 -----------------------------------RFEVGDELAYEKTQKSCEIEQHTLP 188
                                                +  +E+A   +  S E + + LP
Sbjct: 181 LTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLE-KSYELP 239
Query: 189 DGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGT 248
           DGQVI IG ER+   E LFQPS +G+E+ GI E   ++I     +  + L  N V+ GGT
Sbjct: 240 DGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGT 299
Query: 249 TSMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHI 307
           T   G  DR QKE   L  S ++  ++ PPE        YS WIGG+ILA +   Q   I
Sbjct: 300 TMYPGIADRMQKEITALAPSTMKIKIIAPPERK------YSVWIGGSILASLSTFQQMWI 353
Query: 308 TKADYDESGPSVVHRKCF 325
           TK +YDE+GPS+VHRKCF
Sbjct: 354 TKQEYDEAGPSIVHRKCF 371

>pdb|1EQY|A Chain A, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin Domain 1 Length = 377

Iteration: 1
 Score =  199 bits (506), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 137/378 (36%), Positives = 180/378 (47%), Gaps = 64/378 (16%)
Query: 3   AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG--------SSSVDNSTLVEDVTV 54
           A V D GS L+KAG A  D AP  V PS + R    G         S V +    +   +
Sbjct: 9   ALVCDNGSGLVKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 67
Query: 55  D---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMF 111
               P+  G I +WD ME + HH  Y  L         +L   PL +PKA RE++ Q+MF
Sbjct: 68  TLKYPIEXGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPL-NPKANREKMTQIMF 126
Query: 112 ETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG-AVQHIASR------- 163
           ETFN+   Y + QAVLSLYA GR +G  +D G G     P+ EG A+ H   R       
Sbjct: 127 ETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRD 186
Query: 164 -----------------------------------RFEVGDELAYEKTQKSCEIEQHTLP 188
                                                +  +E+A   +  S E + + LP
Sbjct: 187 LTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLE-KSYELP 245
Query: 189 DGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGT 248
           DGQVI IG ER+   E LFQPS +G+E+ GI E   ++I     +  + L  N V+ GGT
Sbjct: 246 DGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGT 305
Query: 249 TSMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHI 307
           T   G  DR QKE   L  S ++  ++ PPE        YS WIGG+ILA +   Q   I
Sbjct: 306 TMYPGIADRMQKEITALAPSTMKIKIIAPPERK------YSVWIGGSILASLSTFQQMWI 359
Query: 308 TKADYDESGPSVVHRKCF 325
           TK +YDE+GPS+VHRKCF
Sbjct: 360 TKQEYDEAGPSIVHRKCF 377

>pdb|3G37|O Chain O, Cryo-Em Structure Of Actin Filament In The Presence Of Phosphate Length = 376

Iteration: 1
 Score =  199 bits (506), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 137/378 (36%), Positives = 180/378 (47%), Gaps = 64/378 (16%)
Query: 3   AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG--------SSSVDNSTLVEDVTV 54
           A V D GS L+KAG A  D AP  V PS + R    G         S V +    +   +
Sbjct: 8   ALVCDNGSGLVKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 66
Query: 55  D---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMF 111
               P+  G I +WD ME + HH  Y  L         +L   PL +PKA RE++ Q+MF
Sbjct: 67  TLKYPIEXGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPL-NPKANREKMTQIMF 125
Query: 112 ETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG-AVQHIASR------- 163
           ETFN+   Y + QAVLSLYA GR +G  +D G G     P+ EG A+ H   R       
Sbjct: 126 ETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRD 185
Query: 164 -----------------------------------RFEVGDELAYEKTQKSCEIEQHTLP 188
                                                +  +E+A   +  S E + + LP
Sbjct: 186 LTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLE-KSYELP 244
Query: 189 DGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGT 248
           DGQVI IG ER+   E LFQPS +G+E+ GI E   ++I     +  + L  N V+ GGT
Sbjct: 245 DGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGT 304
Query: 249 TSMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHI 307
           T   G  DR QKE   L  S ++  ++ PPE        YS WIGG+ILA +   Q   I
Sbjct: 305 TMYPGIADRMQKEITALAPSTMKIKIIAPPERK------YSVWIGGSILASLSTFQQMWI 358
Query: 308 TKADYDESGPSVVHRKCF 325
           TK +YDE+GPS+VHRKCF
Sbjct: 359 TKQEYDEAGPSIVHRKCF 376

>pdb|1QZ5|A Chain A, Structure Of Rabbit Actin In Complex With Kabiramide C Length = 375

Iteration: 1
 Score =  199 bits (506), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 137/378 (36%), Positives = 180/378 (47%), Gaps = 64/378 (16%)
Query: 3   AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG--------SSSVDNSTLVEDVTV 54
           A V D GS L+KAG A  D AP  V PS + R    G         S V +    +   +
Sbjct: 7   ALVCDNGSGLVKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 65
Query: 55  D---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMF 111
               P+  G I +WD ME + HH  Y  L         +L   PL +PKA RE++ Q+MF
Sbjct: 66  TLKYPIEXGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPL-NPKANREKMTQIMF 124
Query: 112 ETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG-AVQHIASR------- 163
           ETFN+   Y + QAVLSLYA GR +G  +D G G     P+ EG A+ H   R       
Sbjct: 125 ETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRD 184
Query: 164 -----------------------------------RFEVGDELAYEKTQKSCEIEQHTLP 188
                                                +  +E+A   +  S E + + LP
Sbjct: 185 LTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLE-KSYELP 243
Query: 189 DGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGT 248
           DGQVI IG ER+   E LFQPS +G+E+ GI E   ++I     +  + L  N V+ GGT
Sbjct: 244 DGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGT 303
Query: 249 TSMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHI 307
           T   G  DR QKE   L  S ++  ++ PPE        YS WIGG+ILA +   Q   I
Sbjct: 304 TMYPGIADRMQKEITALAPSTMKIKIIAPPERK------YSVWIGGSILASLSTFQQMWI 357
Query: 308 TKADYDESGPSVVHRKCF 325
           TK +YDE+GPS+VHRKCF
Sbjct: 358 TKQEYDEAGPSIVHRKCF 375

>pdb|3W3D|A Chain A, Crystal Structure Of Smooth Muscle G Actin Dnase I Complex Length = 374

Iteration: 1
 Score =  197 bits (502), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 137/378 (36%), Positives = 179/378 (47%), Gaps = 64/378 (16%)
Query: 3   AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG--------SSSVDNSTLVEDVTV 54
           A V D GS L KAG A  D AP  V PS + R    G         S V +    +   +
Sbjct: 6   ALVCDNGSGLCKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 64
Query: 55  D---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMF 111
               P+  G I +WD ME + HH  Y  L         +L   PL +PKA RE++ Q+MF
Sbjct: 65  TLKYPIEXGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPL-NPKANREKMTQIMF 123
Query: 112 ETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG-AVQHIASR------- 163
           ETFN+   Y + QAVLSLYA GR +G  +D G G     P+ EG A+ H   R       
Sbjct: 124 ETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRD 183
Query: 164 -----------------------------------RFEVGDELAYEKTQKSCEIEQHTLP 188
                                                +  +E+A   +  S E + + LP
Sbjct: 184 LTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLE-KSYELP 242
Query: 189 DGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGT 248
           DGQVI IG ER+   E LFQPS +G+E+ GI E   ++I     +  + L  N VL GGT
Sbjct: 243 DGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGT 302
Query: 249 TSMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHI 307
           T   G  DR QKE   L  S ++  ++ PPE        YS WIGG+ILA +   Q   I
Sbjct: 303 TMYPGIADRMQKEITALAPSTMKIKIIAPPERK------YSVWIGGSILASLSTFQQMWI 356
Query: 308 TKADYDESGPSVVHRKCF 325
           +K +YDE+GPS+VHRKCF
Sbjct: 357 SKQEYDEAGPSIVHRKCF 374

>pdb|2W49|D Chain D, Isometrically Contracting Insect Asynchronous Flight Muscle Length = 372

Iteration: 1
 Score =  191 bits (485), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 134/375 (35%), Positives = 177/375 (47%), Gaps = 64/375 (17%)
Query: 3   AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG--------SSSVDNSTLVEDVTV 54
           A V D GS L+KAG A  D AP  V PS + R    G         S V +    +   +
Sbjct: 7   ALVCDNGSGLVKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 65
Query: 55  D---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMF 111
               P+  G I +WD ME + HH  Y  L      E   L T+   +PKA RE++ Q+MF
Sbjct: 66  TLKYPIEHGIITNWDDMEKIWHHTFYNELRVAP-EEHPTLLTEAPLNPKANREKMTQIMF 124
Query: 112 ETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG-AVQHIASR------- 163
           ETFN+   Y + QAVLSLYA GR +G  +D G G     P+ EG A+ H   R       
Sbjct: 125 ETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRD 184
Query: 164 -----------------------------------RFEVGDELAYEKTQKSCEIEQHTLP 188
                                                +  +E+A   +  S E + + LP
Sbjct: 185 LTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLE-KSYELP 243
Query: 189 DGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGT 248
           DGQVI IG ER+   E LFQPS +G+E+ GI E   ++I     +  + L  N V+ GGT
Sbjct: 244 DGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGT 303
Query: 249 TSMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHI 307
           T   G  DR QKE   L  S ++  ++ PPE        YS WIGG+ILA +   Q   I
Sbjct: 304 TMYPGIADRMQKEITALAPSTMKIKIIAPPERK------YSVWIGGSILASLSTFQQMWI 357
Query: 308 TKADYDESGPSVVHR 322
           TK +YDE+GPS+VHR
Sbjct: 358 TKQEYDEAGPSIVHR 372

>pdb|1ATN|A Chain A, Atomic Structure Of The Actin:dnase I Complex Length = 373

Iteration: 1
 Score =  191 bits (485), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 134/375 (35%), Positives = 177/375 (47%), Gaps = 64/375 (17%)
Query: 3   AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG--------SSSVDNSTLVEDVTV 54
           A V D GS L+KAG A  D AP  V PS + R    G         S V +    +   +
Sbjct: 8   ALVCDNGSGLVKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 66
Query: 55  D---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMF 111
               P+  G I +WD ME + HH  Y  L      E   L T+   +PKA RE++ Q+MF
Sbjct: 67  TLKYPIEXGIITNWDDMEKIWHHTFYNELRVAP-EEHPTLLTEAPLNPKANREKMTQIMF 125
Query: 112 ETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG-AVQHIASR------- 163
           ETFN+   Y + QAVLSLYA GR +G  +D G G     P+ EG A+ H   R       
Sbjct: 126 ETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRD 185
Query: 164 -----------------------------------RFEVGDELAYEKTQKSCEIEQHTLP 188
                                                +  +E+A   +  S E + + LP
Sbjct: 186 LTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLE-KSYELP 244
Query: 189 DGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGT 248
           DGQVI IG ER+   E LFQPS +G+E+ GI E   ++I     +  + L  N V+ GGT
Sbjct: 245 DGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGT 304
Query: 249 TSMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHI 307
           T   G  DR QKE   L  S ++  ++ PPE        YS WIGG+ILA +   Q   I
Sbjct: 305 TMYPGIADRMQKEITALAPSTMKIKIIAPPERK------YSVWIGGSILASLSTFQQMWI 358
Query: 308 TKADYDESGPSVVHR 322
           TK +YDE+GPS+VHR
Sbjct: 359 TKQEYDEAGPSIVHR 373

>pdb|3B63|L Chain L, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365

Iteration: 1
 Score =  191 bits (484), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 137/372 (36%), Positives = 178/372 (47%), Gaps = 62/372 (16%)
Query: 3   AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG--------SSSVDNSTLVEDVTV 54
           A VVD GS + KAG A  D AP  V PS + R    G         S V +    +   +
Sbjct: 2   ALVVDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 60
Query: 55  D---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMF 111
               P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MF
Sbjct: 61  TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMF 119
Query: 112 ETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG-AVQHIASRRFEVGDE 170
           ETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG A+ H   R    G +
Sbjct: 120 ETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 179
Query: 171 L-----------AYEKT------------QKSCEI------------------EQHTLPD 189
           L            Y  T            +K C +                  + + LPD
Sbjct: 180 LTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPD 239
Query: 190 GQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTT 249
           GQVI IG ER+   EALFQPS LG+E+ GI E   ++I     +  + L  NTVL GGTT
Sbjct: 240 GQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTT 299
Query: 250 SMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHIT 308
              G  DR QKE   L  S ++  ++ PPE        YS WIGG+ILA +   Q   I+
Sbjct: 300 MYPGIADRMQKEITALAPSTMKIKIIAPPERK------YSVWIGGSILASLSTFQQMWIS 353
Query: 309 KADYDESGPSVV 320
           K +YDESGPS+V
Sbjct: 354 KQEYDESGPSIV 365

>pdb|3B63|A Chain A, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365

Iteration: 1
 Score =  189 bits (481), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 130/372 (34%), Positives = 183/372 (49%), Gaps = 62/372 (16%)
Query: 3   AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG--------SSSVDNSTLVEDVTV 54
           A V+D GS + KAG A  D AP  V PS + R    G         S V +    +   +
Sbjct: 2   ALVIDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHQGIMVGMGQKDSYVGDEAQSKRGIL 60
Query: 55  D---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMF 111
               P+  G + +WD ME + HH  Y  L      E  +L T+   +PK+ RE++ Q+MF
Sbjct: 61  TLRYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPMNPKSNREKMTQIMF 119
Query: 112 ETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG---------------- 155
           ETFN+  FY S QAVLSLY+ GR +G  +D G G   + P+  G                
Sbjct: 120 ETFNVPAFYVSIQAVLSLYSSGRTTGIVLDSGDGNTHVVPIYAGFSLPHAILRIDLAGRD 179
Query: 156 ---AVQHIASRR-------------FEVGDELAY---------EKTQKSCEIEQ-HTLPD 189
               +  I S R              ++ ++L Y         +   +S  IE+ + LPD
Sbjct: 180 LTDYLMKILSERGYSFSTTAEREIVRDIKEKLCYVALDFEQEMQTAAQSSSIEKSYELPD 239
Query: 190 GQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTT 249
           GQVI IG ER+   EALF PS+LGLE+ GI +   ++I     +  ++L  N V+ GGTT
Sbjct: 240 GQVITIGNERFRAPEALFHPSVLGLESAGIDQTTYNSIMKCDVDVRKELYGNIVMSGGTT 299
Query: 250 SMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHIT 308
              G  +R QKE   L  S+++  ++ PPE        YS WIGG+ILA +   Q   I+
Sbjct: 300 MFPGIAERMQKEITALAPSSMKVKIIAPPERK------YSVWIGGSILASLTTFQQMWIS 353
Query: 309 KADYDESGPSVV 320
           K +YDESGPS+V
Sbjct: 354 KQEYDESGPSIV 365

>pdb|3M6G|A Chain A, Crystal Structure Of Actin In Complex With Lobophorolide Length = 371

Iteration: 1
 Score =  189 bits (479), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 133/374 (35%), Positives = 176/374 (47%), Gaps = 64/374 (17%)
Query: 3   AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG--------SSSVDNSTLVEDVTV 54
           A V D GS L+KAG A  D AP  V PS + R    G         S V +    +   +
Sbjct: 7   ALVCDNGSGLVKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 65
Query: 55  D---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMF 111
               P+  G I +WD ME + HH  Y  L      E   L T+   +PKA RE++ Q+MF
Sbjct: 66  TLKYPIEHGIITNWDDMEKIWHHTFYNELRVAP-EEHPTLLTEAPLNPKANREKMTQIMF 124
Query: 112 ETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG-AVQHIASR------- 163
           ETFN+   Y + QAVLSLYA GR +G  +D G G     P+ EG A+ H   R       
Sbjct: 125 ETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRD 184
Query: 164 -----------------------------------RFEVGDELAYEKTQKSCEIEQHTLP 188
                                                +  +E+A   +  S E + + LP
Sbjct: 185 LTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLE-KSYELP 243
Query: 189 DGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGT 248
           DGQVI IG ER+   E LFQPS +G+E+ GI E   ++I     +  + L  N V+ GGT
Sbjct: 244 DGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGT 303
Query: 249 TSMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHI 307
           T   G  DR QKE   L  S ++  ++ PPE        YS WIGG+ILA +   Q   I
Sbjct: 304 TMYPGIADRMQKEITALAPSTMKIKIIAPPERK------YSVWIGGSILASLSTFQQMWI 357
Query: 308 TKADYDESGPSVVH 321
           TK +YDE+GPS+VH
Sbjct: 358 TKQEYDEAGPSIVH 371

>pdb|3B63|C Chain C, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365

Iteration: 1
 Score =  189 bits (479), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 130/372 (34%), Positives = 183/372 (49%), Gaps = 62/372 (16%)
Query: 3   AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG--------SSSVDNSTLVEDVTV 54
           A V+D GS + KAG A  D AP  V PS + R    G         S V +    +   +
Sbjct: 2   ALVIDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHQGIMVGMGQKDSYVGDEAQSKRGIL 60
Query: 55  D---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMF 111
               P+  G + +WD ME + HH  Y  L      E  +L T+   +PK+ RE++ Q+MF
Sbjct: 61  TLRYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPMNPKSNREKMTQIMF 119
Query: 112 ETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG---------------- 155
           ETFN+  FY S QAVLSLY+ GR +G  +D G G   + P+  G                
Sbjct: 120 ETFNVPAFYVSIQAVLSLYSSGRTTGIVLDSGDGVTHVVPIYAGFSLPHAILRIDLAGRD 179
Query: 156 ---AVQHIASRR-------------FEVGDELAY---------EKTQKSCEIEQ-HTLPD 189
               +  I S R              ++ ++L Y         +   +S  IE+ + LPD
Sbjct: 180 LTDYLMKILSERGYSFSTTAEREIVRDIKEKLCYVALDFEQEMQTAAQSSSIEKSYELPD 239
Query: 190 GQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTT 249
           GQVI IG ER+   EALF PS+LGLE+ GI +   ++I     +  ++L  N V+ GGTT
Sbjct: 240 GQVITIGNERFRAPEALFHPSVLGLESAGIDQTTYNSIMKCDVDVRKELYGNIVMSGGTT 299
Query: 250 SMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHIT 308
              G  +R QKE   L  S+++  ++ PPE        YS WIGG+ILA +   Q   I+
Sbjct: 300 MFPGIAERMQKEITALAPSSMKVKIIAPPERK------YSVWIGGSILASLTTFQQMWIS 353
Query: 309 KADYDESGPSVV 320
           K +YDESGPS+V
Sbjct: 354 KQEYDESGPSIV 365

>pdb|3B63|B Chain B, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 364

Iteration: 1
 Score =  186 bits (473), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 132/372 (35%), Positives = 176/372 (47%), Gaps = 63/372 (16%)
Query: 3   AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG--------SSSVDNSTLVED--V 52
           A V D GS L+KAG A  D AP  V PS + R    G         S V +    +   +
Sbjct: 2   ALVCDNGSGLVKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 60
Query: 53  TVDPVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFE 112
           T+   + G I +WD ME + HH  Y  L      E   L T+   +PKA RE++ Q+MFE
Sbjct: 61  TLKYPIEGIITNWDDMEKIWHHTFYNELRVAP-EEHPTLLTEAPLNPKANREKMTQIMFE 119
Query: 113 TFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG-AVQHIASR-------- 163
           TFN+   Y + QAVLSLYA GR +G  +D G G     P+ EG A+ H   R        
Sbjct: 120 TFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDL 179
Query: 164 ----------------------------------RFEVGDELAYEKTQKSCEIEQHTLPD 189
                                               +  +E+A   +  S E + + LPD
Sbjct: 180 TDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLE-KSYELPD 238
Query: 190 GQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTT 249
           GQVI IG ER+   E LFQPS +G+E+ GI E   ++I     +  + L  N V+ GGTT
Sbjct: 239 GQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTT 298
Query: 250 SMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHIT 308
              G  DR QKE   L  S ++  ++ PPE        YS WIGG+ILA +   Q   IT
Sbjct: 299 MYPGIADRMQKEITALAPSTMKIKIIAPPERK------YSVWIGGSILASLSTFQQMWIT 352
Query: 309 KADYDESGPSVV 320
           K +YDE+GPS+V
Sbjct: 353 KQEYDEAGPSIV 364

>pdb|3B63|E Chain E, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365

Iteration: 1
 Score =  186 bits (471), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 132/373 (35%), Positives = 175/373 (46%), Gaps = 64/373 (17%)
Query: 3   AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG--------SSSVDNSTLVEDVTV 54
           A V D GS L+KAG A  D AP  V PS + R    G         S V +    +   +
Sbjct: 2   ALVCDNGSGLVKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 60
Query: 55  D---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMF 111
               P+  G I +WD ME + HH  Y  L      E   L T+   +PKA RE++ Q+MF
Sbjct: 61  TLKYPIEHGIITNWDDMEKIWHHTFYNELRVAP-EEHPTLLTEAPLNPKANREKMTQIMF 119
Query: 112 ETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG-AVQHIASR------- 163
           ETFN+   Y + QAVLSLYA GR +G  +D G G     P+ EG A+ H   R       
Sbjct: 120 ETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRD 179
Query: 164 -----------------------------------RFEVGDELAYEKTQKSCEIEQHTLP 188
                                                +  +E+A   +  S E + + LP
Sbjct: 180 LTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLE-KSYELP 238
Query: 189 DGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGT 248
           DGQVI IG ER+   E LFQPS +G+E+ GI E   ++I     +  + L  N V+ GGT
Sbjct: 239 DGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGT 298
Query: 249 TSMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHI 307
           T   G  DR QKE   L  S ++  ++ PPE        YS WIGG+ILA +   Q   I
Sbjct: 299 TMYPGIADRMQKEITALAPSTMKIKIIAPPERK------YSVWIGGSILASLSTFQQMWI 352
Query: 308 TKADYDESGPSVV 320
           TK +YDE+GPS+V
Sbjct: 353 TKQEYDEAGPSIV 365

>pdb|3B63|D Chain D, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357

Iteration: 1
 Score =  176 bits (447), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 128/366 (34%), Positives = 170/366 (46%), Gaps = 63/366 (17%)
Query: 3   AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG--------SSSVDNSTLVED--V 52
           A V D GS L+KAG A  D AP  V PS + R    G         S V +    +   +
Sbjct: 1   ALVCDNGSGLVKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 59
Query: 53  TVDPVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFE 112
           T+   + G I +WD ME + HH  Y  L      E   L T+   +PKA RE++ Q+MFE
Sbjct: 60  TLKYPIEGIITNWDDMEKIWHHTFYNELRVAP-EEHPTLLTEAPLNPKANREKMTQIMFE 118
Query: 113 TFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG-AVQHIASR-------- 163
           TFN+   Y + QAVLSLYA GR +G  +D G G     P+ EG A+ H   R        
Sbjct: 119 TFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDL 178
Query: 164 ----------------------------------RFEVGDELAYEKTQKSCEIEQHTLPD 189
                                               +  +E+A   +  S E + + LPD
Sbjct: 179 TDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLE-KSYELPD 237
Query: 190 GQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTT 249
           GQVI IG ER+   E LFQPS +G+E+ GI E   ++I     +  + L  N V+ GGTT
Sbjct: 238 GQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTT 297
Query: 250 SMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHIT 308
              G  DR QKE   L  S ++  ++ PPE        YS WIGG+ILA +   Q   IT
Sbjct: 298 MYPGIADRMQKEITALAPSTMKIKIIAPPERK------YSVWIGGSILASLSTFQQMWIT 351
Query: 309 KADYDE 314
           K +YDE
Sbjct: 352 KQEYDE 357

>pdb|3B63|F Chain F, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357

Iteration: 1
 Score =  172 bits (437), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 126/364 (34%), Positives = 168/364 (46%), Gaps = 63/364 (17%)
Query: 3   AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG--------SSSVDNSTLVED--V 52
           A V D GS L+KAG A  D AP  V PS + R    G         S V +    +   +
Sbjct: 3   ALVCDNGSGLVKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 61
Query: 53  TVDPVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFE 112
           T+   + G I +WD ME + HH  Y  L      E   L T+   +PKA RE++ Q+MFE
Sbjct: 62  TLKYPIEGIITNWDDMEKIWHHTFYNELRVAP-EEHPTLLTEAPLNPKANREKMTQIMFE 120
Query: 113 TFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG-AVQHIASR-------- 163
           TFN+   Y + QAVLSLYA GR +G  +D G G     P+ EG A+ H   R        
Sbjct: 121 TFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDL 180
Query: 164 ----------------------------------RFEVGDELAYEKTQKSCEIEQHTLPD 189
                                               +  +E+A   +  S E + + LPD
Sbjct: 181 TDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLE-KSYELPD 239
Query: 190 GQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTT 249
           GQVI IG ER+   E LFQPS +G+E+ GI E   ++I     +  + L  N V+ GGTT
Sbjct: 240 GQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTT 299
Query: 250 SMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHIT 308
              G  DR QKE   L  S ++  ++ PPE        YS WIGG+ILA +   Q   IT
Sbjct: 300 MYPGIADRMQKEITALAPSTMKIKIIAPPERK------YSVWIGGSILASLSTFQQMWIT 353
Query: 309 KADY 312
           K +Y
Sbjct: 354 KQEY 357

>pdb|2P9K|B Chain B, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized With Atp And Crosslinked With Glutaraldehyde Length = 394

Iteration: 1
 Score =  137 bits (346), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 107/393 (27%), Positives = 176/393 (44%), Gaps = 83/393 (21%)
Query: 2   EAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTVD------ 55
           +  V D G+  +K G A     P  + PS + R +   ++ V N  + + +  D      
Sbjct: 7   KVVVCDNGTGFVKCGYA-GSNFPEHIFPSLVGRPIIRSTTKVGNIEIKDLMVGDEASELR 65
Query: 56  -------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGN----EGQILFTDPLCSPKAVRE 104
                  P+  G +R+WD M+ L  +      G E+ N      +IL T+P  +P   RE
Sbjct: 66  SMLEVNYPMENGIVRNWDDMKHLWDYTF----GPEKLNIDTRNCKILLTEPPMNPTKNRE 121
Query: 105 QLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRR 164
           ++V++MFET+  SG Y + QAVL+LYA G ++G  VD G G   I PV EG      +RR
Sbjct: 122 KIVEVMFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFSLPHLTRR 181
Query: 165 FEVG--------------------------------DELAY-----EKTQK-----SCEI 182
            ++                                 ++L Y     E+ QK     +  +
Sbjct: 182 LDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQKLALETTVLV 241
Query: 183 EQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENT 242
           E +TLPDG++I++G ER+   EALFQP ++ +E  G+ E L +TI     +   +  ++ 
Sbjct: 242 ESYTLPDGRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHI 301
Query: 243 VLCGGTTSMTGFEDRFQKEAGLCS------------SAIRPTLVKPPEYMPENLTLYSAW 290
           VL GG+T   G   R ++E                 S  +  +  PP         +  +
Sbjct: 302 VLSGGSTMYPGLPSRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRK------HMVF 355
Query: 291 IGGAILAKVVFPQ-NQHITKADYDESGPSVVHR 322
           +GGA+LA ++  + N  +T+ +Y E G  V+ +
Sbjct: 356 LGGAVLADIMKDKDNFWMTRQEYQEKGVRVLEK 388

>pdb|1K8K|B Chain B, Crystal Structure Of Arp23 COMPLEX Length = 394

Iteration: 1
 Score =  136 bits (343), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 106/393 (26%), Positives = 176/393 (44%), Gaps = 83/393 (21%)
Query: 2   EAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTVD------ 55
           +  V D G+  +K G A     P  + P+ + R +   ++ V N  + + +  D      
Sbjct: 7   KVVVCDNGTGFVKCGYA-GSNFPEHIFPALVGRPIIRSTTKVGNIEIKDLMVGDEASELR 65
Query: 56  -------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGN----EGQILFTDPLCSPKAVRE 104
                  P+  G +R+WD M+ L  +      G E+ N      +IL T+P  +P   RE
Sbjct: 66  SMLEVNYPMENGIVRNWDDMKHLWDYTF----GPEKLNIDTRNCKILLTEPPMNPTKNRE 121
Query: 105 QLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRR 164
           ++V++MFET+  SG Y + QAVL+LYA G ++G  VD G G   I PV EG      +RR
Sbjct: 122 KIVEVMFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFSLPHLTRR 181
Query: 165 FEVG--------------------------------DELAY-----EKTQK-----SCEI 182
            ++                                 ++L Y     E+ QK     +  +
Sbjct: 182 LDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQKLALETTVLV 241
Query: 183 EQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENT 242
           E +TLPDG++I++G ER+   EALFQP ++ +E  G+ E L +TI     +   +  ++ 
Sbjct: 242 ESYTLPDGRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHI 301
Query: 243 VLCGGTTSMTGFEDRFQKEAGLCS------------SAIRPTLVKPPEYMPENLTLYSAW 290
           VL GG+T   G   R ++E                 S  +  +  PP         +  +
Sbjct: 302 VLSGGSTMYPGLPSRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRK------HMVF 355
Query: 291 IGGAILAKVVFPQ-NQHITKADYDESGPSVVHR 322
           +GGA+LA ++  + N  +T+ +Y E G  V+ +
Sbjct: 356 LGGAVLADIMKDKDNFWMTRQEYQEKGVRVLEK 388

>pdb|1K8K|A Chain A, Crystal Structure Of Arp23 COMPLEX Length = 418

Iteration: 1
 Score = 85.1 bits (209), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 100/407 (24%), Positives = 153/407 (37%), Gaps = 92/407 (22%)
Query: 1   MEAAVVDAGSKLLKAGPAIPDQAPSMVIPS------------QMKRVLEDGSSSVDNSTL 48
           + A VVD G+   K G A  +  P  +IPS            Q +R +  G   +D    
Sbjct: 5   LPACVVDCGTGYTKLGYA-GNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIG 63
Query: 49  VEDV------TVDPVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAV 102
            E +      T  P+  G + DWD ME  +  V++  L  E  +   +L   PL +P+  
Sbjct: 64  DEAIEKPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPEN- 122
Query: 103 REQLVQLMFETFNISGFY------SSEQAVLSLYAVGR--ISGCTVDIGHGKIDIAPVIE 154
           RE   ++MFE+FN+ G Y       +  A  +   VG   ++G  +D G G   + PV E
Sbjct: 123 REYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAE 182
Query: 155 GAV--------------------QHIASRRFEVGDELAYEKTQKSCEIEQHTLPD----- 189
           G V                    Q +  R   +  E + E  +   E   +  PD     
Sbjct: 183 GYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEF 242
Query: 190 -----------------------GQVIRIGKERYTVGEALFQPSILGLE-AHGIVEQLVH 225
                                     I +G ER+   E  F P     +    I E +  
Sbjct: 243 NKYDTDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDE 302
Query: 226 TISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAG------------LCSSAIRPTL 273
            I     +  R L +N VL GG+T    F  R Q++              L    ++P  
Sbjct: 303 VIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKP 362
Query: 274 VKPPEYMPENLTLYSAWIGGAILAKVV-FPQNQHITKADYDESGPSV 319
           +   + +  ++  Y+ W GG++LA    F Q  H TK DY+E GPS+
Sbjct: 363 ID-VQVITHHMQRYAVWFGGSMLASTPEFYQVCH-TKKDYEEIGPSI 407

>pdb|3DWL|A Chain A, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking The Arp2 Subunit Length = 427

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 96/393 (24%), Positives = 147/393 (37%), Gaps = 82/393 (20%)
Query: 5   VVDAGSKLLKAGPAIPDQAPSMVIPSQ----MKRVLEDGSSSVDNSTLVE---DVTVD-P 56
           V+   S    +GPA+  +   M          KR  ED    + N  L +     ++D P
Sbjct: 34  VIATRSAGASSGPAVSSKPSYMASKGSGHLSSKRATEDLDFFIGNDALKKASAGYSLDYP 93
Query: 57  VVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNI 116
           +  G I +WD ME      L+  L  E   +   L T+P  +P   RE   ++MFE+FN 
Sbjct: 94  IRHGQIENWDHMERFWQQSLFKYLRCEP-EDHYFLLTEPPLNPPENRENTAEIMFESFNC 152
Query: 117 SGFY-------SSEQAVLSLYAVGR-ISGCTVDIGHGKIDIAPVIEGA------------ 156
           +G Y       +   +  S     R ++G  VD G G   I PV EG             
Sbjct: 153 AGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLA 212
Query: 157 -------VQHIASRRFEVGDEL-AYEKTQKSC---------EIEQHTL-PD--------- 189
                  VQ +   R E    L   E+ ++ C         E  +    PD         
Sbjct: 213 GRDVTYFVQSLLRDRNEPDSSLKTAERIKEECCYVCPDIVKEFSRFDREPDRYLKYASES 272
Query: 190 ----GQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQ-LLENTVL 244
                  I +G ER+   E  F P I   +    + +LV  +   S  + R+ L +N VL
Sbjct: 273 ITGHSTTIDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVL 332
Query: 245 CGGTTSMTGFEDRFQKE---------------AGLCSSAIRPTLVKPPEYMPENLTLYSA 289
            GG+T    F +R Q++               +G  S  +   ++             + 
Sbjct: 333 SGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVIS------HKRQRNAV 386
Query: 290 WIGGAILAKVVFPQNQHITKADYDESGPSVVHR 322
           W GG++LA+     +   TKADY+E G S+  R
Sbjct: 387 WFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419

>pdb|3QB0|A Chain A, Crystal Structure Of Actin-Related Protein Arp4 From S. Cerevisiae Complexed With Atp Length = 498

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 77/170 (45%), Gaps = 7/170 (4%)
Query: 1   MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQM-KRVLEDGSSSVDNSTLV----EDVTVD 55
           + A V+D GS     G +  D  P  ++PS   K   ++G+  + +   +    +D  + 
Sbjct: 23  VSAVVIDPGSYTTNIGYSGSD-FPQSILPSVYGKYTADEGNKKIFSEQSIGIPRKDYELK 81
Query: 56  PVV-RGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETF 114
           P++  G + DWD  ++     L   L     +    L T+P+ +    R++ ++++ E  
Sbjct: 82  PIIENGLVIDWDTAQEQWQWALQNELYLNSNSGIPALLTEPVWNSTENRKKSLEVLLEGM 141
Query: 115 NISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRR 164
                Y +  +    +A GR +   VDIGH    ++P+++G     ++RR
Sbjct: 142 QFEACYLAPTSTCVSFAAGRPNCLVVDIGHDTCSVSPIVDGMTLSKSTRR 191

>pdb|4I6M|B Chain B, Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex Of Swi/snf Chromatin Remodeler Length = 439

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 83/412 (20%), Positives = 155/412 (37%), Gaps = 125/412 (30%)
Query: 24  PSMVIPSQMKRVLEDGSSSVDNSTLVEDVT--VDPVVRGFIRDWDAMEDLLHHVLYAGLG 81
           P + IP+Q+ R      S   +ST  ++    + P+  G I D  A    L  +  + L 
Sbjct: 33  PELEIPTQIYRTTRQDGSYTYHSTNKDNKAELIKPIQNGEIIDISAFTQFLRLIFVSILS 92
Query: 82  WEEGNEGQILFTDPLCS-----------PKAVREQLVQLMFETFNISGFYSSEQAVLSLY 130
            +  N+ Q  F   L +            ++  E + Q +FE+  I+       ++ + Y
Sbjct: 93  -DRANKNQDAFEAELSNIPLLLITHHSWSQSDLEIITQYVFESLEINNLIQLPASLAATY 151
Query: 131 AVGRISGC-TVDIGHGKIDIAPVIEGA-VQHIAS-------------------------- 162
           +   +  C  +D+G    DI P+++ A + H+ S                          
Sbjct: 152 SXISLQNCCIIDVGTHHTDIIPIVDYAQLDHLVSSIPXGGQSINDSLKKLLPQWDDDQIE 211
Query: 163 ------------------RRFEVGDELAYEK--TQKSCEIEQHTLPD--GQVIRIGKERY 200
                               F+ G+E   E   T K+ ++E +T  D  G  I++GK+R+
Sbjct: 212 SLKKSPIFEVLSDDAKKLSSFDFGNENEDEDEGTLKNSDLEFNTFWDEKGNEIKVGKQRF 271
Query: 201 TVGEALFQPSILGLEAHGIVEQLVHTISTVSSENH-RQLLENTVLCGGTTSMTGFED--- 256
                L +          I  ++  T+  +   N  + + EN ++ GGTTS++GF++   
Sbjct: 272 QGCNNLIK---------NISNRVGLTLDNIDDINKAKAVWENIIIVGGTTSISGFKEALL 322
Query: 257 -------------------------------RFQKEAGLCSSAIRPT-----------LV 274
                                          + + +    S+A  PT           L 
Sbjct: 323 GQLLKDHLIIEPEEEKSKREEEAKSVLPAATKKKSKFXTNSTAFVPTIEYVQCPTVIKLA 382
Query: 275 KPPEYMPE-NLTLYSA--WIGGAILAKVVF--PQNQ-HITKADYDESGPSVV 320
           K P+Y PE   + YS   ++G  I++K +F  P++  +IT+  Y+  GP+ +
Sbjct: 383 KYPDYFPEWKKSGYSEIIFLGAQIVSKQIFTHPKDTFYITREKYNXKGPAAL 434

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	325
1k8k_B	394	ARP2, actin-like protein 2; beta-propeller, struct	1e-91
2fxu_A	375	Alpha-actin-1, actin, alpha skeletal muscle; actin	2e-90
1k8k_A	418	ARP3, actin-like protein 3, actin-2; beta-propelle	8e-80
3dwl_A	427	Actin-related protein 3; propellor, actin-binding,	1e-72
3qb0_A	498	Actin-related protein 4; actin fold, ATP binding,	1e-42
3qb0_A	498	Actin-related protein 4; actin fold, ATP binding,	4e-35
3qb0_A	498	Actin-related protein 4; actin fold, ATP binding,	2e-06

>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Length = 394

 Score =  277 bits (710), Expect = 1e-91
 Identities = 98/388 (25%), Positives = 163/388 (42%), Gaps = 67/388 (17%)

Query: 1   MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTVD----- 55
            +  V D G+  +K G A     P  + P+ + R     S++   +  ++D+ V      
Sbjct: 6   RKVVVCDNGTGFVKCGYA-GSNFPEHIFPALVGRP-IIRSTTKVGNIEIKDLMVGDEASE 63

Query: 56  ---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQL 106
                    P+  G +R+WD M+ L  +         +    +IL T+P  +P   RE++
Sbjct: 64  LRSMLEVNYPMENGIVRNWDDMKHLWDYTFGPEKLNIDTRNCKILLTEPPMNPTKNREKI 123

Query: 107 VQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFE 166
           V++MFET+  SG Y + QAVL+LYA G ++G  VD G G   I PV EG      +RR +
Sbjct: 124 VEVMFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFSLPHLTRRLD 183

Query: 167 VG-------------------------------------------DELAYEKTQKSCEIE 183
           +                                             E            E
Sbjct: 184 IAGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQKLALETTVLV-E 242

Query: 184 QHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTV 243
            +TLPDG++I++G ER+   EALFQP ++ +E  G+ E L +TI     +   +  ++ V
Sbjct: 243 SYTLPDGRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIV 302

Query: 244 LCGGTTSMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLT-----LYSAWIGGAILA 297
           L GG+T   G   R ++E   L    +    V+        +       +  ++GGA+LA
Sbjct: 303 LSGGSTMYPGLPSRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLA 362

Query: 298 KVV-FPQNQHITKADYDESGPSVVHRKC 324
            ++    N  +T+ +Y E G  V+ +  
Sbjct: 363 DIMKDKDNFWMTRQEYQEKGVRVLEKLG 390

>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Length = 375

 Score =  273 bits (701), Expect = 2e-90
 Identities = 134/379 (35%), Positives = 180/379 (47%), Gaps = 62/379 (16%)

Query: 1   MEAAVVDAGSKLLKAGPAIPDQAPSMVIPS-----QMKRVL---EDGSSSVDNSTLVEDV 52
             A V D GS L+KAG A  D AP  V PS     + + V+       S V +    +  
Sbjct: 5   TTALVCDNGSGLVKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 63

Query: 53  TVD---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQL 109
            +    P+  G I +WD ME + HH  Y  L      E   L T+   +PKA RE++ Q+
Sbjct: 64  ILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAP-EEHPTLLTEAPLNPKANREKMTQI 122

Query: 110 MFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVG- 168
           MFETFN+   Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++  
Sbjct: 123 MFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAG 182

Query: 169 -----------------------DELAYEKTQKSCEI------------------EQHTL 187
                                   E+  +  +K C +                  + + L
Sbjct: 183 RDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYEL 242

Query: 188 PDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGG 247
           PDGQVI IG ER+   E LFQPS +G+E+ GI E   ++I     +  + L  N V+ GG
Sbjct: 243 PDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGG 302

Query: 248 TTSMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQH 306
           TT   G  DR QKE   L  S ++  ++ PPE        YS WIGG+ILA +   Q   
Sbjct: 303 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERK------YSVWIGGSILASLSTFQQMW 356

Query: 307 ITKADYDESGPSVVHRKCF 325
           ITK +YDE+GPS+VHRKCF
Sbjct: 357 ITKQEYDEAGPSIVHRKCF 375

>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Length = 418

 Score =  248 bits (634), Expect = 8e-80
 Identities = 95/418 (22%), Positives = 141/418 (33%), Gaps = 101/418 (24%)

Query: 1   MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSS-----SVDNSTLVEDVTVD 55
           + A VVD G+   K G A  +  P  +IPS +               V       D  + 
Sbjct: 5   LPACVVDCGTGYTKLGYA-GNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIG 63

Query: 56  -------------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAV 102
                        P+  G + DWD ME  +  V++  L   E  +   L T+P  +    
Sbjct: 64  DEAIEKPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLR-AEPEDHYFLLTEPPLNTPEN 122

Query: 103 REQLVQLMFETFNISGFYSSEQAVLSLYAVGR--------ISGCTVDIGHGKIDIAPVIE 154
           RE   ++MFE+FN+ G Y + QAVL+L A           ++G  +D G G   + PV E
Sbjct: 123 REYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAE 182

Query: 155 GAVQHIASRRFEVG-------------------------------------------DEL 171
           G V     +   +                                             E 
Sbjct: 183 GYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEF 242

Query: 172 AYEKTQKSCEIEQHTLPDGQ-----VIRIGKERYTVGEALFQPSILGLE-AHGIVEQLVH 225
               T  S  I+Q+T  +        I +G ER+   E  F P     +    I E +  
Sbjct: 243 NKYDTDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDE 302

Query: 226 TISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKE------------AGLCSSAIRPTL 273
            I     +  R L +N VL GG+T    F  R Q++              L    ++P  
Sbjct: 303 VIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKP 362

Query: 274 VK-----PPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRK-CF 325
           +                 Y+ W GG++LA          TK DY+E GPS+      F
Sbjct: 363 IDVQVITHHM------QRYAVWFGGSMLASTPEFYQVCHTKKDYEEIGPSICRHNPVF 414

>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 427

 Score =  230 bits (587), Expect = 1e-72
 Identities = 90/423 (21%), Positives = 143/423 (33%), Gaps = 109/423 (25%)

Query: 3   AAVVDAGSKLLKAGPAIPDQAPSMVIPS-------------------QMKRVLEDGSSSV 43
             ++D G+   K G A  + APS V P+                           G  S 
Sbjct: 7   PIIMDNGTGYSKLGYA-GNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSGHLSS 65

Query: 44  DNSTLVEDVTVD---------------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEG 88
             +T   D  +                P+  G I +WD ME      L+  L   E  + 
Sbjct: 66  KRATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLR-CEPEDH 124

Query: 89  QILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR--------ISGCTV 140
             L T+P  +P   RE   ++MFE+FN +G Y + QAVL+L A           ++G  V
Sbjct: 125 YFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVV 184

Query: 141 DIGHGKIDIAPVIEGAVQHIASRRFEVG--------DELAYEKTQKSCEIE--------- 183
           D G G   I PV EG V   + +   +           L  ++ +    ++         
Sbjct: 185 DSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAERIKEEC 244

Query: 184 --------------------------QHTLPDGQVIRIGKERYTVGEALFQPSILGLE-A 216
                                     +        I +G ER+   E  F P I   +  
Sbjct: 245 CYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIASSDFL 304

Query: 217 HGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKE----------AGLCS 266
             + E + + + +   +  + L +N VL GG+T    F +R Q++               
Sbjct: 305 TPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEML 364

Query: 267 SAIRPTLVK-----PPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVH 321
           S  +   V                  + W GG++LA+     +   TKADY+E G S+  
Sbjct: 365 SGAKSGGVDVNVISHKR------QRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIAR 418

Query: 322 RKC 324
           R  
Sbjct: 419 RYQ 421

>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498

 Score =  152 bits (386), Expect = 1e-42
 Identities = 31/167 (18%), Positives = 62/167 (37%), Gaps = 3/167 (1%)

Query: 159 HIASRRFEVGDELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHG 218
              S   +   ++   + ++   + + T P         E         +P     E  G
Sbjct: 334 TKPSGVNKSDKKVTPTEEKEQEAVSKSTSPAANSADTPNETGKRPLEEEKPPKENNELIG 393

Query: 219 IVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPE 278
           + + +  +I +   +    L  N VL GGT+S+ G  DR   E      +++  ++    
Sbjct: 394 LADLVYSSIMSSDVDLRATLAHNVVLTGGTSSIPGLSDRLMTELNKILPSLKFRILTTGH 453

Query: 279 YMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF 325
            +      Y +W+GG+IL  +       + K +Y+E G   +    F
Sbjct: 454 TIERQ---YQSWLGGSILTSLGTFHQLWVGKKEYEEVGVERLLNDRF 497

>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498

 Score =  132 bits (333), Expect = 4e-35
 Identities = 35/172 (20%), Positives = 70/172 (40%), Gaps = 7/172 (4%)

Query: 3   AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSS---VDNSTLVEDVTVD---P 56
           A V+D GS     G +     P  ++PS   +   D  +     + S  +     +    
Sbjct: 25  AVVIDPGSYTTNIGYS-GSDFPQSILPSVYGKYTADEGNKKIFSEQSIGIPRKDYELKPI 83

Query: 57  VVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNI 116
           +  G + DWD  ++     L   L     +    L T+P+ +    R++ ++++ E    
Sbjct: 84  IENGLVIDWDTAQEQWQWALQNELYLNSNSGIPALLTEPVWNSTENRKKSLEVLLEGMQF 143

Query: 117 SGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVG 168
              Y +  +    +A GR +   VDIGH    ++P+++G     ++RR  + 
Sbjct: 144 EACYLAPTSTCVSFAAGRPNCLVVDIGHDTCSVSPIVDGMTLSKSTRRNFIA 195

>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498

 Score = 48.1 bits (114), Expect = 2e-06
 Identities = 20/96 (20%), Positives = 29/96 (30%), Gaps = 4/96 (4%)

Query: 177 QKSCEIEQHTLPDGQVIRIGKE-RYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENH 235
             S        P  + I    E RY   E LF P    + A+       ++    +  N 
Sbjct: 271 LSSTAKRSIESPWNEEIVFDNETRYGFAEELFLPKEDDIPAN---WPRSNSGVVKTWRND 327

Query: 236 RQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRP 271
              L+ T   G   S        +KE    S +  P
Sbjct: 328 YVPLKRTKPSGVNKSDKKVTPTEEKEQEAVSKSTSP 363

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	325
3dwl_A	427	Actin-related protein 3; propellor, actin-binding,	100.0
3qb0_A	498	Actin-related protein 4; actin fold, ATP binding,	100.0
2fxu_A	375	Alpha-actin-1, actin, alpha skeletal muscle; actin	100.0
4fo0_A	593	Actin-related protein 8; chromatin remodeling, nuc	100.0
1k8k_B	394	ARP2, actin-like protein 2; beta-propeller, struct	100.0
1k8k_A	418	ARP3, actin-like protein 3, actin-2; beta-propelle	100.0
4am6_A	655	Actin-like protein ARP8; nuclear protein, chromati	100.0
1jce_A	344	ROD shape-determining protein MREB; MBL, actin, HS	99.97
3h1q_A	272	Ethanolamine utilization protein EUTJ; ethanolamin	99.82
2v7y_A	509	Chaperone protein DNAK; HSP70, heat shock protein,	99.76
3qfu_A	394	78 kDa glucose-regulated protein homolog; HSP70, K	99.73
1dkg_D	383	Molecular chaperone DNAK; HSP70, GRPE, nucleotide	99.69
3i33_A	404	Heat shock-related 70 kDa protein 2; protein-ADP c	99.67
1yuw_A	554	Heat shock cognate 71 kDa protein; chaperone; 2.60	99.47
2kho_A	605	Heat shock protein 70; molecular chaperone, HSP70,	99.43
3d2f_A	675	Heat shock protein homolog SSE1; nucleotide exchan	99.42
2fsj_A	346	Hypothetical protein TA0583; actin homologs, archa	99.35
4gni_A	409	Putative heat shock protein; HSP70-type ATPase, AT	99.32
2ych_A	377	Competence protein PILM; cell cycle, type IV pilus	99.28
4b9q_A	605	Chaperone protein DNAK; HET: ATP; 2.40A {Escherich	99.13
4a2a_A	419	Cell division protein FTSA, putative; cell cycle,	98.86
3js6_A	355	Uncharacterized PARM protein; partition, segregati	98.76
4apw_A	329	ALP12; actin-like protein; 19.70A {Clostridium tet	98.65
2zgy_A	320	Plasmid segregation protein PARM; plasmid partitio	98.58
4ehu_A	276	Activator of 2-hydroxyisocaproyl-COA dehydratase;	97.44
1hux_A	270	Activator of (R)-2-hydroxyglutaryl-COA dehydratase	95.69
1t6c_A	315	Exopolyphosphatase; alpha/beta protein, actin-like	95.56
3hi0_A	508	Putative exopolyphosphatase; 17739545, structural	94.67
3bex_A	249	Type III pantothenate kinase; actin-like fold, ATP	94.54
2d0o_A	610	DIOL dehydratase-reactivating factor large subunit	94.33
3mdq_A	315	Exopolyphosphatase; structural genomics, joint cen	93.9
1u6z_A	513	Exopolyphosphatase; alpha/beta protein, askha (ace	93.74
1nbw_A	607	Glycerol dehydratase reactivase alpha subunit; mol	93.15
3aap_A	353	Ectonucleoside triphosphate diphosphohydrolase I;	92.19
3cer_A	343	Possible exopolyphosphatase-like protein; NESG, BL	91.57
3cet_A	334	Conserved archaeal protein; Q6M145, MRR63, NESG, X	90.85
3djc_A	266	Type III pantothenate kinase; structural genomics,	89.25
2h3g_X	268	Biosynthetic protein; pantothenate kinase, anthrax	86.84
2gup_A	292	ROK family protein; sugar kinase, streptococcus pn	85.75
1zbs_A	291	Hypothetical protein PG1100; alpha-beta protein.,	84.2
2ews_A	287	Pantothenate kinase; PANK, structural genomics, st	83.85
3vgl_A	321	Glucokinase; ROK family, transferase; HET: BGC ANP	82.3
3cj1_A	456	Ectonucleoside triphosphate diphosphohydrolase 2;	81.79
3zx3_A	452	Ectonucleoside triphosphate diphosphohydrolase 1;	81.68
2i7n_A	360	Pantothenate kinase 1; PANK, transferase; HET: ACO	81.39

>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7.1e-76  Score=555.47  Aligned_cols=315  Identities=28%  Similarity=0.442  Sum_probs=276.6

Q ss_pred             ceEEEEcCCCcEEEeeeCCCCCCcEecccceeecCC--------------------------------CcccccCccccc
Q 020526            2 EAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLE--------------------------------DGSSSVDNSTLV   49 (325)
Q Consensus         2 ~~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~~--------------------------------~~~~g~~~~~~~   49 (325)
                      ++||||+||+++|+||| ||+.|+.+|||.+++...                                +.++| |++...
T Consensus         6 ~~iViDnGs~~~KaG~a-g~~~P~~v~Ps~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG-~ea~~~   83 (427)
T 3dwl_A            6 VPIIMDNGTGYSKLGYA-GNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSGHLSSKRATEDLDFFIG-NDALKK   83 (427)
T ss_dssp             SCEEECCCSSBC-CEET-TSSSCSCCCBCCEECC------------------------------CCSSCCEET-HHHHHT
T ss_pred             CeEEEECCCCeEEEEEC-CCCCCCCcCCceEEeecccccccccccccccccccccccccccccCcccCCeEEc-hHHhhC
Confidence            68999999999999999 999999999999976421                                35788 887665


Q ss_pred             c--Cce-eccccCCeecCHHHHHHHHHHHHHhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhh
Q 020526           50 E--DVT-VDPVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAV  126 (325)
Q Consensus        50 ~--~~~-~~p~~~g~i~d~~~~~~il~~~~~~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~  126 (325)
                      +  .++ ++|+++|.|.|||.+|++|+|+|.+.|++++ .+||++++||+++++..|++++|++||.|++|+++++.+++
T Consensus        84 ~~~~l~~~~Pi~~GvI~dwd~~e~iw~~~~~~~L~v~~-~~~pvlltep~~~~~~~re~~~ei~FE~~~~p~v~l~~~~v  162 (427)
T 3dwl_A           84 ASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEP-EDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAV  162 (427)
T ss_dssp             HHHHCCCCCSEETTEECCHHHHHHHHHHHHHTTSCCCG-GGCEEEEEECTTCCHHHHHHHHHHHTTTTCCSEEEEEEHHH
T ss_pred             cccCcEEecCcccCeeccHHHHHHHHHHHHhHhhCCCC-cCCcEEEEcCCCCCHHHHHHHHHHHHHhccCceeeecchHH
Confidence            5  455 4999999999999999999999999999999 89999999999999999999999999999999999999999


Q ss_pred             hhhhhcC--------CceEEEEEcCCCceEEEEeecCeeccccceeecCcc-----------------------------
Q 020526          127 LSLYAVG--------RISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGD-----------------------------  169 (325)
Q Consensus       127 ~a~~~~g--------~~tglVVdiG~~~t~v~pv~~G~~i~~~~~~~~~ge-----------------------------  169 (325)
                      ||+|++|        .+||+|||+|++.|+|+||++|+++.++++++++|.                             
T Consensus       163 la~~a~G~~~~~~~~~~tglVVDiG~g~T~v~PV~~G~~l~~~~~rl~~gG~~lt~~L~~lL~~~~~~~~~~~~~~~IKe  242 (427)
T 3dwl_A          163 LALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAERIKE  242 (427)
T ss_dssp             HHHHGGGGSTTTCSCCCCEEEEEESSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHTTC--------CHHHHHHHH
T ss_pred             HHHHhcCCcccccCCCceEEEEECCCCceEEEEEECCEEehhhheeccccHHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Confidence            9999998        689999999999999999999999999999999991                             


Q ss_pred             hhch-----hhhcc-----cCCcceEEC--CCCc--EEEecceeeccccccccCCCCCCc-CCcHHHHHHHHHHhCChHH
Q 020526          170 ELAY-----EKTQK-----SCEIEQHTL--PDGQ--VIRIGKERYTVGEALFQPSILGLE-AHGIVEQLVHTISTVSSEN  234 (325)
Q Consensus       170 ~~~~-----~~~~~-----~~~~~~~~l--pd~~--~i~l~~e~~~~~E~lF~p~~~~~~-~~~i~~~I~~~i~~~~~d~  234 (325)
                      +.+|     .++..     ....+.|.+  |||+  .+.++.|||.+||+||+|++++.+ ..+|+++|.++|++||+|+
T Consensus       243 ~~cyv~~d~~~e~~~~~~~~~~~~~~~l~~~~g~~~~i~ig~erf~~pE~LF~P~~~g~~~~~gI~~~i~~sI~~c~~dl  322 (427)
T 3dwl_A          243 ECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDV  322 (427)
T ss_dssp             HHCCCCSCHHHHHHHTTC-----CCBCC---------CBCCTHHHHSGGGGTCGGGTCSSCCSCHHHHHHHHHHTSCHHH
T ss_pred             hcCcccCCHHHHHHHhhcCccccceeEeeCCCCCeeEEEEChHhhhChhhccCchhcCCccCCCccHHHHHHHHhCCHHH
Confidence            1222     11111     112466777  8887  888999999999999999999988 4899999999999999999


Q ss_pred             HHhccccEEEecCCCCccchHHHHHHhh-ccC--------------CCCcceEEeCCCCCCCCCCCceeeeehhhhhhcc
Q 020526          235 HRQLLENTVLCGGTTSMTGFEDRFQKEA-GLC--------------SSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKV  299 (325)
Q Consensus       235 r~~l~~nIil~GG~s~~~G~~~rl~~eL-~~~--------------~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~l  299 (325)
                      |+.|++||||+||+|++|||.+||++|| +++              |..++++|+.+|+      |++++|+|||++|++
T Consensus       323 r~~L~~nIvLtGG~sl~~G~~~RL~~El~~l~~~~~~~~~~~~~~~p~~~~vkv~~~~~------r~~s~WiGGSilasl  396 (427)
T 3dwl_A          323 RKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKR------QRNAVWFGGSLLAQT  396 (427)
T ss_dssp             HHHHHHCEEEESGGGCSTTTTHHHHHHHHHHHTTC-------------CCCCCEECCTT------CTTHHHHHHHHHHHS
T ss_pred             HHHHhCCEEEEccCcCCCChHHHHHHHHHHhhhhhccccccccccCCCceeEEEecCCc------cccceecCceeeccc
Confidence            9999999999999999999999999999 876              5567899999998      999999999999999


Q ss_pred             CCCCCeeeeHHHHhhcCcchhhcccC
Q 020526          300 VFPQNQHITKADYDESGPSVVHRKCF  325 (325)
Q Consensus       300 ~~~~~~~itk~ey~e~G~~~~~~k~~  325 (325)
                      ++|+++||||+||+|+|+++++||++
T Consensus       397 ~~f~~~witk~EYeE~G~~iv~~~~~  422 (427)
T 3dwl_A          397 PEFGSYCHTKADYEEYGASIARRYQI  422 (427)
T ss_dssp             TTHHHHSEEHHHHHHSCGGGGSCCCC
T ss_pred             cchhheeEEHHHHhhhChHhheeccc
Confidence            99999999999999999999999974

>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.7e-75  Score=555.11  Aligned_cols=314  Identities=24%  Similarity=0.423  Sum_probs=283.2

Q ss_pred             CceEEEEcCCCcEEEeeeCCCCCCcEecccceeecC----CCcccccCc-ccccc-Cce-eccccCCeecCHHHHHHHHH
Q 020526            1 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVL----EDGSSSVDN-STLVE-DVT-VDPVVRGFIRDWDAMEDLLH   73 (325)
Q Consensus         1 m~~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~----~~~~~g~~~-~~~~~-~~~-~~p~~~g~i~d~~~~~~il~   73 (325)
                      +++||||+||++||+||+ |++.|+.++||++++..    ++.++| ++ +...+ .++ ++|+++|.|.|||++|.+|+
T Consensus        23 ~~~iVID~GS~~~kaG~a-g~~~P~~v~PSvVg~~~~~~~~~~~vG-~e~~~~~r~~l~l~~Pi~~GvI~dwd~~E~iw~  100 (498)
T 3qb0_A           23 VSAVVIDPGSYTTNIGYS-GSDFPQSILPSVYGKYTADEGNKKIFS-EQSIGIPRKDYELKPIIENGLVIDWDTAQEQWQ  100 (498)
T ss_dssp             BSCEEEECCSSEEEEEET-TCSSCSEEEESEEEEESSCSSCCEECC-TTGGGSCCTTEEEEESEETTEESCHHHHHHHHH
T ss_pred             CCeEEEECCCcEEEEEEC-CCCCeeeecCceeEEeccCCCccEEEe-cHHHhcCcCceEEeccCcCCEEccHHHHHHHHH
Confidence            368999999999999999 99999999999998753    246789 76 44444 566 49999999999999999999


Q ss_pred             HHHHhccCCCCCCCc-eEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCCceEEEEEcCCCceEEEEe
Q 020526           74 HVLYAGLGWEEGNEG-QILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPV  152 (325)
Q Consensus        74 ~~~~~~l~~~~~~~~-~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVdiG~~~t~v~pv  152 (325)
                      |+|.+.|++++ .++ |+|+++|++++...|+++++++||.|++|+++++.+++||+|++|+++|+|||+|++.|+|+||
T Consensus       101 ~~f~~~L~v~p-~~~~pvlltep~~n~~~~Re~~~eilFE~f~vpav~l~~~~vlalya~G~~tglVVDiG~g~T~vvPI  179 (498)
T 3qb0_A          101 WALQNELYLNS-NSGIPALLTEPVWNSTENRKKSLEVLLEGMQFEACYLAPTSTCVSFAAGRPNCLVVDIGHDTCSVSPI  179 (498)
T ss_dssp             HHHHHTSCCSC-CTTCCEEEEECTTCCHHHHHHHHHHHHTTSCCSEEEEEEHHHHHHHHHTCSSEEEEEECSSCEEEEEE
T ss_pred             HHHHhhhCCCc-ccCCceEEEeCCCCcHHHHHHHHHHHHhhcCCCeEeecchHHHHHHHcCCCeEEEEEcCCCcEEEEEE
Confidence            99998999999 889 9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCeeccccceeecCcch---------h-----------------------------ch-----hh-------h------
Q 020526          153 IEGAVQHIASRRFEVGDE---------L-----------------------------AY-----EK-------T------  176 (325)
Q Consensus       153 ~~G~~i~~~~~~~~~ge~---------~-----------------------------~~-----~~-------~------  176 (325)
                      ++|+++.++++++++|.+         +                             .|     +.       +      
T Consensus       180 ~~G~~l~~ai~rl~vgG~~lt~~L~~lL~~~~i~P~~~i~~k~~~~~~~~~~~~~~~s~~~~~~~~~iv~~iKE~~c~Va  259 (498)
T 3qb0_A          180 VDGMTLSKSTRRNFIAGKFINHLIKKALEPKEIIPLFAIKQRKPEFIKKTFDYEVDKSLYDYANNRGFFQECKETLCHIC  259 (498)
T ss_dssp             ETTEECGGGCEEESCSHHHHHHHHHHHTTTSCCCCSTTEEECSSSCEECCCSSCCCHHHHHHHHHHTHHHHHHHHTCCCC
T ss_pred             eCCEEccccceeccccHHHHHHHHHHHHHhccccchhhhcccccccccccCCCccCccHHHHHHHHHHHHHHHHhhEEec
Confidence            999999999999999921         0                             00     00       0      


Q ss_pred             -c----------ccCCcceEECCCCcEEEecce-eeccccccccCCCCCC------------------------------
Q 020526          177 -Q----------KSCEIEQHTLPDGQVIRIGKE-RYTVGEALFQPSILGL------------------------------  214 (325)
Q Consensus       177 -~----------~~~~~~~~~lpd~~~i~l~~e-~~~~~E~lF~p~~~~~------------------------------  214 (325)
                       .          .+...+.|+||||+.|.+++| ||.+||+||+|++++.                              
T Consensus       260 ~~~~~~~~~~~~~~~~~~~yeLPDG~~i~lg~E~Rf~~pE~LF~P~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~  339 (498)
T 3qb0_A          260 PTKTLEETKTELSSTAKRSIESPWNEEIVFDNETRYGFAEELFLPKEDDIPANWPRSNSGVVKTWRNDYVPLKRTKPSGV  339 (498)
T ss_dssp             SSCHHHHHHHHHHTCCCEEEECSSSCEEEECHHHHHHHHHTTTSCCGGGSCTTSCCCSSSCCCCCSCCCCCCCBCC----
T ss_pred             CCccHhHHhhhccCcCceEEECCCCCEEEECchHhhhCchhhCCHhHcCCcccccccccccccccccccccccccccccc
Confidence             0          011246899999999999999 9999999999986643                              


Q ss_pred             --------------------------------------------------cCCcHHHHHHHHHHhCChHHHHhccccEEE
Q 020526          215 --------------------------------------------------EAHGIVEQLVHTISTVSSENHRQLLENTVL  244 (325)
Q Consensus       215 --------------------------------------------------~~~~i~~~I~~~i~~~~~d~r~~l~~nIil  244 (325)
                                                                        +..||+++|.++|++||+|+|+.|++||||
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~e~i~~sI~~cd~d~r~~L~~nIvL  419 (498)
T 3qb0_A          340 NKSDKKVTPTEEKEQEAVSKSTSPAANSADTPNETGKRPLEEEKPPKENNELIGLADLVYSSIMSSDVDLRATLAHNVVL  419 (498)
T ss_dssp             -------------------------------------------------CCSCCHHHHHHHHHHTSCTTTHHHHHTTEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccCCCchHHHHHHHHhCCHHHHHHHhcCEEE
Confidence                                                              567999999999999999999999999999


Q ss_pred             ecCCCCccchHHHHHHhh-ccCCCCcceEEeCC---CCCCCCCCCceeeeehhhhhhccCCCCCeeeeHHHHhhcCc-ch
Q 020526          245 CGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKP---PEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGP-SV  319 (325)
Q Consensus       245 ~GG~s~~~G~~~rl~~eL-~~~~~~~~v~v~~~---~~~~~~~~~~~~~W~G~si~a~l~~~~~~~itk~ey~e~G~-~~  319 (325)
                      +||++++|||.+||++|| +++| ..+++|+.+   ++      |.+++|+|||++|++++|+++||||+||+|+|+ ++
T Consensus       420 sGGst~~pGf~~Rl~~El~~l~p-~~~i~v~~~~~~~e------r~~s~WiGgsilasl~~f~~~witk~EY~E~G~~~i  492 (498)
T 3qb0_A          420 TGGTSSIPGLSDRLMTELNKILP-SLKFRILTTGHTIE------RQYQSWLGGSILTSLGTFHQLWVGKKEYEEVGVERL  492 (498)
T ss_dssp             ESGGGGSTTHHHHHHHHHHHHST-TSCCCEECCSCTGG------GGSHHHHHHHHHHTCHHHHHTSEEHHHHHTTCCHHH
T ss_pred             eCCccCchhHHHHHHHHHHHhCC-CCeeEEEcCCCCCc------cCccEEcccEEEecCcchhceEEEHHHHhhhCcHhh
Confidence            999999999999999999 9999 889999987   55      899999999999999999999999999999999 99


Q ss_pred             hhccc
Q 020526          320 VHRKC  324 (325)
Q Consensus       320 ~~~k~  324 (325)
                      |+|||
T Consensus       493 v~~kc  497 (498)
T 3qb0_A          493 LNDRF  497 (498)
T ss_dssp             HHHTT
T ss_pred             ccccC
Confidence            99998

>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ...

Probab=100.00  E-value=3e-68  Score=498.26  Aligned_cols=316  Identities=43%  Similarity=0.690  Sum_probs=283.4

Q ss_pred             CceEEEEcCCCcEEEeeeCCCCCCcEecccceeecC----------CCcccccCcccccc-Cce-eccccCCeecCHHHH
Q 020526            1 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVL----------EDGSSSVDNSTLVE-DVT-VDPVVRGFIRDWDAM   68 (325)
Q Consensus         1 m~~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~----------~~~~~g~~~~~~~~-~~~-~~p~~~g~i~d~~~~   68 (325)
                      +++||||+||+++|+||+ |++.|+.++||.+++..          ++.++| +++...+ .++ .+|+++|.|.|||.+
T Consensus         5 ~~~ivID~Gs~~~k~G~~-~~~~p~~~~ps~v~~~~~~~~~~~~~~~~~~vG-~~a~~~~~~~~~~~Pi~~G~i~d~d~~   82 (375)
T 2fxu_A            5 TTALVCDNGSGLVKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG-DEAQSKRGILTLKYPIEHGIITNWDDM   82 (375)
T ss_dssp             CCCEEEEECSSEEEEEET-TCSSCSEEEECCEEEECTTTC-------CCEEH-HHHHHHTTSEEEECSEETTEECCHHHH
T ss_pred             CceEEEECCCCeEEEEEC-CCCCCceeeccccccccccccccCCCCCCeEec-hhHhhcCcccceeccccCCcccCHHHH
Confidence            478999999999999999 99999999999998642          235788 8876555 344 499999999999999


Q ss_pred             HHHHHHHHHhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCCceEEEEEcCCCceE
Q 020526           69 EDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKID  148 (325)
Q Consensus        69 ~~il~~~~~~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVdiG~~~t~  148 (325)
                      +.+|+|+|.+.|++++ .++++++++|++++...|+++++++||.+++++++++++|+||+|++|.++++|||+|++.|+
T Consensus        83 e~i~~~~~~~~L~~~~-~~~~vvit~p~~~~~~~r~~~~e~~fe~~g~~~~~~~~e~~aaa~a~g~~~~lVvDiG~gtt~  161 (375)
T 2fxu_A           83 EKIWHHTFYNELRVAP-EEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTH  161 (375)
T ss_dssp             HHHHHHHHHTTSCCCG-GGSCEEEEECTTCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHTTCSSEEEEEECSSCEE
T ss_pred             HHHHHHHHHHhcCCCC-cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCcceEEEccchheeeeecCCCeEEEEEcCCCceE
Confidence            9999999988899998 899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeecCeeccccceeecCcch--------------------------------hch-----hhhc-----ccCCcceEE
Q 020526          149 IAPVIEGAVQHIASRRFEVGDE--------------------------------LAY-----EKTQ-----KSCEIEQHT  186 (325)
Q Consensus       149 v~pv~~G~~i~~~~~~~~~ge~--------------------------------~~~-----~~~~-----~~~~~~~~~  186 (325)
                      |+||++|+++.++..++++|.+                                .+|     .++.     .+.....|.
T Consensus       162 v~~v~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~~~~~~~~~e~iK~~~~~v~~~~~~e~~~~~~~~~~~~~~~  241 (375)
T 2fxu_A          162 NVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE  241 (375)
T ss_dssp             EEEEETTEECGGGCEEESCCHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCEEEE
T ss_pred             EeEeECCEEeccceEEeccCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhcccHHHHHHhhcccCccCeEEE
Confidence            9999999999999999999921                                011     0000     011246799


Q ss_pred             CCCCcEEEecceeeccccccccCCCCCCcCCcHHHHHHHHHHhCChHHHHhccccEEEecCCCCccchHHHHHHhh-ccC
Q 020526          187 LPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLC  265 (325)
Q Consensus       187 lpd~~~i~l~~e~~~~~E~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL-~~~  265 (325)
                      +|||+.+.++.+||.++|.||+|.+++.+..+|+++|.++|++||+|+|+.+++||+||||+|++|||.+||++|| ++.
T Consensus       242 lpdg~~i~i~~erf~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~IvLtGG~s~~pG~~~rl~~el~~~~  321 (375)
T 2fxu_A          242 LPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALA  321 (375)
T ss_dssp             CTTSCEEEESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHHTCEEEESGGGCSTTHHHHHHHHHHHHS
T ss_pred             CCCCCEEEEChhheechHhhCCCccCCCCCCCHHHHHHHHHHhCCHHHHHHHHhCcEeeCCCCCCccHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999 899


Q ss_pred             CCCcceEEeCCCCCCCCCCCceeeeehhhhhhccCCCCCeeeeHHHHhhcCcchhhcccC
Q 020526          266 SSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF  325 (325)
Q Consensus       266 ~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~l~~~~~~~itk~ey~e~G~~~~~~k~~  325 (325)
                      |...++++..+++      |.+++|+|||++|++++|+++||||+||+|+|+++++||||
T Consensus       322 p~~~~v~v~~~~~------p~~~~w~G~si~a~l~~f~~~~itk~ey~e~G~~~~~~k~~  375 (375)
T 2fxu_A          322 PSTMKIKIIAPPE------RKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF  375 (375)
T ss_dssp             CTTCCCCEECCTT------TTSHHHHHHHHHHHCGGGGGGSEEHHHHHHHCGGGGC----
T ss_pred             CCCeeEEEEcCCC------CCccEEcchHHhhCcccHhhceeeHHHHhhhChHHHhhhcc
Confidence            9888899988888      89999999999999999999999999999999999999996

>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens}

Probab=100.00  E-value=7e-69  Score=530.72  Aligned_cols=317  Identities=19%  Similarity=0.287  Sum_probs=246.1

Q ss_pred             ceEEEEcCCCcEEEeeeCCCCCCcEecccceeecC---------------------------------------------
Q 020526            2 EAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVL---------------------------------------------   36 (325)
Q Consensus         2 ~~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~---------------------------------------------   36 (325)
                      +.||||+||+++|+||| ||+.|+. +|+++++..                                             
T Consensus        16 ~iIVIdpGS~~~riG~A-~d~~P~~-iP~~iar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (593)
T 4fo0_A           16 FIIVIHPGSTTLRIGRA-TDTLPAS-IPHVIARRHKQQGQPLYKDSWLLREGLNKPESNEQRQNGLKMVDQAIWSKKMSN   93 (593)
T ss_dssp             GEEEEECCSSEEEEEET-TCSSCEE-EECCEEEECSSTTCCCCBCCSSCCTTTTSTTHHHHHHHHHHHHHHHHHHSCCTT
T ss_pred             CEEEEeCCCCCeEeeec-CCCCCCe-eeEEEEEECCCCCCCcccccccccccccccchhhhhhhhHHHHHHHHHHHhhhc
Confidence            36999999999999999 9999975 699997621                                             


Q ss_pred             --------------------------------------CCcccccCccccc---cCcee-ccccCC-----------eec
Q 020526           37 --------------------------------------EDGSSSVDNSTLV---EDVTV-DPVVRG-----------FIR   63 (325)
Q Consensus        37 --------------------------------------~~~~~g~~~~~~~---~~~~~-~p~~~g-----------~i~   63 (325)
                                                            .+.++| ++|...   ..+.+ ||+++|           .+.
T Consensus        94 ~~r~~~~s~~~~~~~n~~~~p~~i~~~~~~~~~~~~~~~~~~vG-~~al~~~~~~~~~l~~Pi~~G~~n~~~~~~~s~~~  172 (593)
T 4fo0_A           94 GTRRIPVSPEQARSYNKQMRPAILDHCSGNKWTNTSHHPEYLVG-EEALYVNPLDCYNIHWPIRRGQLNIHPGPGGSLTA  172 (593)
T ss_dssp             SCCCCCCCHHHHHHHHTTCCCEEEESSCSCCCCCCTTCCSEEET-HHHHTSCTTSSEEEECSEETTEECCCSSTTCSHHH
T ss_pred             ccccCCCcHHHhhhhhccCCCcccCCCCcccccccccccccccc-HHHhhcCCcccceEecCcccCccccccCCccchhc
Confidence                                                  123566 666432   24554 999999           467


Q ss_pred             CHHHHHHHHHHHHHhccCCCCCCC---ceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCCceEEEE
Q 020526           64 DWDAMEDLLHHVLYAGLGWEEGNE---GQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTV  140 (325)
Q Consensus        64 d~~~~~~il~~~~~~~l~~~~~~~---~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVV  140 (325)
                      |||++|+||+|+|.+.|++++ ++   ||+||++|+++++..|++|++++||+|+||+++++++++||+|++|++|||||
T Consensus       173 ~wdd~e~iw~~~~~~~L~i~~-~d~~~~pvlltep~~~~~~~re~~~eilFE~f~~pa~~~~~~~vla~ya~G~~tglVV  251 (593)
T 4fo0_A          173 VLADIEVIWSHAIQKYLEIPL-KDLKYYRCILLIPDIYNKQHVKELVNMILMKMGFSGIVVHQESVCATYGSGLSSTCIV  251 (593)
T ss_dssp             HHHHHHHHHHHHHHHTSCCCG-GGGGGCEEEEEECSSCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHHTCSEEEEE
T ss_pred             CHHHHHHHHHHHHHHhcCCCc-hhccCCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEeechHHHHHHHCCCCceEEE
Confidence            999999999999999999987 54   99999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCceEEEEeecCeeccccceeecCcch-------------------------------------hchhhhc------
Q 020526          141 DIGHGKIDIAPVIEGAVQHIASRRFEVGDE-------------------------------------LAYEKTQ------  177 (325)
Q Consensus       141 diG~~~t~v~pv~~G~~i~~~~~~~~~ge~-------------------------------------~~~~~~~------  177 (325)
                      |+|++.|+|+||+||+++.++++++++|.+                                     .||....      
T Consensus       252 DiG~~~T~v~PV~dG~~l~~~~~rl~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~d~~~v~~iKe~~c~v~~d~~~~~~  331 (593)
T 4fo0_A          252 DVGDQKTSVCCVEDGVSHRNTRLCLAYGGSDVSRCFYWLMQRAGFPYRECQLTNKMDCLLLQHLKETFCHLDQDISGLQD  331 (593)
T ss_dssp             EECSSCEEEEEEESSCBCGGGCEEESCCHHHHHHHHHHHHHHTTCSCTTCCTTCHHHHHHHHHHHHHHCBCCTTCCSCEE
T ss_pred             EeCCCceeeeeeECCEEehhheEEecccHHHHHHHHHHHHHhcCCCccccccccchhHHHHHHHHHHhcccccchHHhhh
Confidence            999999999999999999999999999911                                     1110000      


Q ss_pred             ---------------------------------------------------------------------------ccCCc
Q 020526          178 ---------------------------------------------------------------------------KSCEI  182 (325)
Q Consensus       178 ---------------------------------------------------------------------------~~~~~  182 (325)
                                                                                                 .....
T Consensus       332 ~~~~~~~p~~~~~~~~~~~~~E~~~~p~~lf~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (593)
T 4fo0_A          332 HEFQIRHPDSPALLYQFRLGDEKLQAPMALFYPATFGIVGQKMTTLQHRSQGDPEDPHDEHYLLATQSKQEQSAKATADR  411 (593)
T ss_dssp             EEEEECCTTSCEEEEEEEECTHHHHHHHTTTSGGGGCCCSSCCEEECC--------------------------------
T ss_pred             hhhhcccCCCCceeeEEeccchhhcCchhhcChhhhcccccccchhhhhcccCcccchhhhhhhhcccchhhhhhccccc
Confidence                                                                                       00011


Q ss_pred             ceEECCCCcEEEecceeeccccccccCCCC--------------------------------CCcCCcHHHHHHHHHHhC
Q 020526          183 EQHTLPDGQVIRIGKERYTVGEALFQPSIL--------------------------------GLEAHGIVEQLVHTISTV  230 (325)
Q Consensus       183 ~~~~lpd~~~i~l~~e~~~~~E~lF~p~~~--------------------------------~~~~~~i~~~I~~~i~~~  230 (325)
                      ..+.+|++..+.++.+++.+||.||+|...                                +.+..+|+++|.++|.+|
T Consensus       412 ~~~~~p~g~~~~~~~e~~~~pe~lf~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gL~~aI~~SI~~~  491 (593)
T 4fo0_A          412 KSASKPIGFEGDLRGQSSDLPERLHSQEVDLGSAQGDGLMAGNDSEEALTALMSRKTAISLFEGKALGLDKAILHSIDCC  491 (593)
T ss_dssp             -----------------------------------------------------------CHHHHSCCCHHHHHHHHHHTC
T ss_pred             ccccCCCCcccccccccccCchhccCcccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHHhC
Confidence            356678888888899999999999998532                                123468999999999999


Q ss_pred             C-hHHHHhccccEEEecCCCCccchHHHHHHhh-ccCCCCc-----ceEEeCCCCCCCCCCCceeeeehhhhhhccCCCC
Q 020526          231 S-SENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCSSAI-----RPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQ  303 (325)
Q Consensus       231 ~-~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL-~~~~~~~-----~v~v~~~~~~~~~~~~~~~~W~G~si~a~l~~~~  303 (325)
                      | +|+|+.|++||+||||+|++|||.+||++|| +++|...     +++|+.+|.   ..+|++++|+|||++|+|++|+
T Consensus       492 ~~~D~r~~L~~NIvltGG~s~~pGf~~RL~~eL~~~~p~~~~~~~~~v~v~~~p~---~~d~~~~aW~GgSilasL~~f~  568 (593)
T 4fo0_A          492 SSDDTKKKMYSSILVVGGGLMFHKAQEFLQHRILNKMPPSFRRIIENVDVITRPK---DMDPRLIAWKGGAVLACLDTTQ  568 (593)
T ss_dssp             SSHHHHHHHHHEEEEESSTTCCBTHHHHHHHHHHHHSCHHHHHHSSCCEEESSGG---GCCTTTHHHHHHHHHHHCGGGG
T ss_pred             CcHHHHHHHhCCEEEEchhhchhcHHHHHHHHHHHhCcchhccccceEEEECCCC---CCCCceeeehhhHHHhcCccHH
Confidence            9 5999999999999999999999999999999 8888653     589998884   3348999999999999999999


Q ss_pred             CeeeeHHHHhhcCcchhhcccC
Q 020526          304 NQHITKADYDESGPSVVHRKCF  325 (325)
Q Consensus       304 ~~~itk~ey~e~G~~~~~~k~~  325 (325)
                      ++||||+||+|+|+++|++||+
T Consensus       569 ~~wItk~EYeE~G~~il~~kc~  590 (593)
T 4fo0_A          569 ELWIYQREWQRFGVRMLRERAA  590 (593)
T ss_dssp             GTCEEHHHHHHHTTHHHHHHCS
T ss_pred             HeeECHHHHHhhCcHHHhhcCC
Confidence            9999999999999999999995

>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B*

Probab=100.00  E-value=8.2e-69  Score=504.85  Aligned_cols=312  Identities=33%  Similarity=0.598  Sum_probs=119.2

Q ss_pred             ceEEEEcCCCcEEEeeeCCCCCCcEecccceeecC------------CCcccccCcccccc-Cce-eccccCCeecCHHH
Q 020526            2 EAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVL------------EDGSSSVDNSTLVE-DVT-VDPVVRGFIRDWDA   67 (325)
Q Consensus         2 ~~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~------------~~~~~g~~~~~~~~-~~~-~~p~~~g~i~d~~~   67 (325)
                      ++||||+||+++|+||+ |++.|+.++||++++..            ++.++| +++...+ .++ ++|+++|.|.|||.
T Consensus         7 ~~ivID~Gs~~~k~G~a-g~~~P~~~~Ps~v~~~~~~~~~~~~~~~~~~~~vG-~ea~~~~~~~~~~~Pi~~G~i~dwd~   84 (394)
T 1k8k_B            7 KVVVCDNGTGFVKCGYA-GSNFPEHIFPALVGRPIIRSTTKVGNIEIKDLMVG-DEASELRSMLEVNYPMENGIVRNWDD   84 (394)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEEEEECCCCeEEEeeC-CCCCcceeccceeEEEcccccccccCCCCCCeEEC-hHHHhcCCCceeeccccCCEEecHHH
Confidence            78999999999999999 99999999999987542            245688 8886655 344 49999999999999


Q ss_pred             HHHHHHHHH-HhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCCceEEEEEcCCCc
Q 020526           68 MEDLLHHVL-YAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGK  146 (325)
Q Consensus        68 ~~~il~~~~-~~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVdiG~~~  146 (325)
                      ++.+|+|+| .+.|++++ .++++++++|++++...|+++++++||.+++++++++++++||+|++|.++|+|||+|++.
T Consensus        85 ~e~i~~~~~~~~~L~~~~-~~~~vllt~p~~~~~~~r~~~~e~~fe~~~~~~~~~~~~~~~a~~a~g~~~~lVVDiG~g~  163 (394)
T 1k8k_B           85 MKHLWDYTFGPEKLNIDT-RNCKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGV  163 (394)
T ss_dssp             ----------------------------------------------------------------------CCEEEECSSC
T ss_pred             HHHHHHHHhcccccCcCC-CCCcEEEEECCCCCHHHHHHHHHHhhhccCCCeEEEEhhHHHHHHhCCCceEEEEEcCCCc
Confidence            999999999 88899998 8999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeecCeeccccceeecCcch--------------------------------hchh-----hhc-----ccCCcce
Q 020526          147 IDIAPVIEGAVQHIASRRFEVGDE--------------------------------LAYE-----KTQ-----KSCEIEQ  184 (325)
Q Consensus       147 t~v~pv~~G~~i~~~~~~~~~ge~--------------------------------~~~~-----~~~-----~~~~~~~  184 (325)
                      |+|+||++|+++.+++.++++|.+                                .+|.     ++.     .+.....
T Consensus       164 T~v~pv~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~~~~~~~~ae~iK~~~~~v~~d~~~~~~~~~~~~~~~~~  243 (394)
T 1k8k_B          164 THICPVYEGFSLPHLTRRLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQKLALETTVLVES  243 (394)
T ss_dssp             EEEECEETTEECSTTCEEESCCHHHHHHHHHHHHHHTTCCCCTTTTHHHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCEE
T ss_pred             eEeeeeECCEEcccceEEeeccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhheeEecCHHHHHHhhccCCcCceE
Confidence            999999999999999999999921                                1110     110     0112367


Q ss_pred             EECCCCcEEEecceeeccccccccCCCCCCcCCcHHHHHHHHHHhCChHHHHhccccEEEecCCCCccchHHHHHHhh-c
Q 020526          185 HTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-G  263 (325)
Q Consensus       185 ~~lpd~~~i~l~~e~~~~~E~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL-~  263 (325)
                      |.+|||+.+.++.+||.++|+||+|++++.+..+|+++|.++|.+||+|+|+.|++||+||||+|++|||.+||++|| .
T Consensus       244 ~~lpdg~~i~i~~erf~~~E~Lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvLtGG~s~~~G~~~rl~~el~~  323 (394)
T 1k8k_B          244 YTLPDGRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLERELKQ  323 (394)
T ss_dssp             EECTTSCEEEECTHHHHTGGGGTCGGGGTCCSCCHHHHHHHHHHHSCTTTHHHHHTTCEEESGGGCSTTHHHHHHHHHHH
T ss_pred             EECCCCCEEEECchhhcChHhhCCchhccCCCCCHHHHHHHHHHhCCHHHHHHHHhCEEEeCcccccccHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999999 8


Q ss_pred             cC-----------CCCcceEEeCCCCCCCCCCCceeeeehhhhhhccCCCC-CeeeeHHHHhhcCcchhhc
Q 020526          264 LC-----------SSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQ-NQHITKADYDESGPSVVHR  322 (325)
Q Consensus       264 ~~-----------~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~l~~~~-~~~itk~ey~e~G~~~~~~  322 (325)
                      +.           |...+++|..+|+      |.+++|+|||++|++++|+ ++||||+||+|+|+++++|
T Consensus       324 ~~~~~~~~~~~~~p~~~~v~v~~~~~------~~~~~w~Ggsilasl~~f~~~~~itk~eY~e~G~~~~~~  388 (394)
T 1k8k_B          324 LYLERVLKGDVEKLSKFKIRIEDPPR------RKHMVFLGGAVLADIMKDKDNFWMTRQEYQEKGVRVLEK  388 (394)
T ss_dssp             HHHHHTCSSCCCTTCCCCC----------------------------------------------------
T ss_pred             HHhhhhcccccCCCCceEEEEecCCC------cceeEEhhhHHhhCCcCCccceeecHHHHhhhCHHHHHh
Confidence            77           7777899988888      8999999999999999999 9999999999999999987

>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A

Probab=100.00  E-value=1.1e-64  Score=480.67  Aligned_cols=315  Identities=30%  Similarity=0.441  Sum_probs=280.2

Q ss_pred             CceEEEEcCCCcEEEeeeCCCCCCcEecccceeecCC------------------CcccccCccccccCce-eccccCCe
Q 020526            1 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLE------------------DGSSSVDNSTLVEDVT-VDPVVRGF   61 (325)
Q Consensus         1 m~~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~~------------------~~~~g~~~~~~~~~~~-~~p~~~g~   61 (325)
                      +++||||+||+++|+||+ |++.|+.++||++++...                  +.++| +++...++++ ++|+++|.
T Consensus         5 ~~~ivID~Gs~~~k~G~~-~~~~p~~~~Ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~vG-~~a~~~~~~~~~~pi~~G~   82 (418)
T 1k8k_A            5 LPACVVDCGTGYTKLGYA-GNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIG-DEAIEKPTYATKWPIRHGI   82 (418)
T ss_dssp             SCCEEEEECSSEEEEEET-TCSSCSEEEESCEEECC-----------CCCTTGGGCEEEG-GGGTSCTTSEEECCEETTE
T ss_pred             CCeEEEECCCCeEEEeeC-CCCCCCCcCCceEEEECcccccccccccccccccccCeEEC-hHHHhcCCCEEeccccCCE
Confidence            368999999999999999 999999999999976422                  25788 8886665566 49999999


Q ss_pred             ecCHHHHHHHHHHHHHhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhh---------c
Q 020526           62 IRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYA---------V  132 (325)
Q Consensus        62 i~d~~~~~~il~~~~~~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~---------~  132 (325)
                      +.|||.++.+|+|+|.+.|++++ .++++++++|++++...|+++.+++||.+++++++++++|+||+|+         .
T Consensus        83 i~d~d~~e~i~~~~~~~~L~~~~-~~~~vvit~p~~~~~~~r~~~~e~~fe~~g~~~~~l~~ep~aa~~a~~~~~~~~~~  161 (418)
T 1k8k_A           83 VEDWDLMERFMEQVIFKYLRAEP-EDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGER  161 (418)
T ss_dssp             ESCHHHHHHHHHHHHHTTTCCCG-GGCCEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGSTTCCSC
T ss_pred             ECCHHHHHHHHHHHHHhccCCCC-CCCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCEEEEechHHHHhhhhhcccccCCC
Confidence            99999999999999988899998 8999999999999999999999999999999999999999999998         5


Q ss_pred             CCceEEEEEcCCCceEEEEeecCeeccccceeecCcch--------------------------------hchh-----h
Q 020526          133 GRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGDE--------------------------------LAYE-----K  175 (325)
Q Consensus       133 g~~tglVVdiG~~~t~v~pv~~G~~i~~~~~~~~~ge~--------------------------------~~~~-----~  175 (325)
                      +. +|+|||+|++.|+|+||++|+++.+++.++++|.+                                .+|.     +
T Consensus       162 ~~-~glVvDiG~gtt~v~~v~~G~~~~~~~~~~~lGG~~lt~~l~~~l~~~~~~~~~~~~~~~~e~iK~~~~~v~~~~~~  240 (418)
T 1k8k_A          162 TL-TGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVK  240 (418)
T ss_dssp             CC-CEEEEEESSSCEEEEEEETTEECGGGCEEESCSHHHHHHHHHHHHHTTCCCCCGGGHHHHHHHHHHHHCCCCSCHHH
T ss_pred             CC-eEEEEEcCCCceEEEEeECCEEcccceEEEeCcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhchhcccHHH
Confidence            66 99999999999999999999999999999999921                                0110     0


Q ss_pred             hc------ccCCcceEECCCCc-----EEEecceeeccccccccCCCCCCcC-CcHHHHHHHHHHhCChHHHHhccccEE
Q 020526          176 TQ------KSCEIEQHTLPDGQ-----VIRIGKERYTVGEALFQPSILGLEA-HGIVEQLVHTISTVSSENHRQLLENTV  243 (325)
Q Consensus       176 ~~------~~~~~~~~~lpd~~-----~i~l~~e~~~~~E~lF~p~~~~~~~-~~i~~~I~~~i~~~~~d~r~~l~~nIi  243 (325)
                      +.      .......|.+||+.     .+.++.+||.++|.||+|.+.+.+. .+|+++|.++|++||+|+|+.+++||+
T Consensus       241 e~~~~~~~~~~~~~~~~lpd~~~~~~~~i~l~~erf~~~E~lF~P~~~~~~~~~~i~~~i~~si~~~~~~~~~~l~~~Iv  320 (418)
T 1k8k_A          241 EFNKYDTDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIV  320 (418)
T ss_dssp             HHHHHHHSGGGTCEEEEEECTTTCCEEEEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHHSCGGGTTHHHHCEE
T ss_pred             HHHhhcccccccceeEECCCCCCCcccEEEeChHHhhCcHhhCCCccCCCCCCCCHHHHHHHHHHcCCHHHHHHHHhceE
Confidence            00      00112579999988     8999999999999999999888774 799999999999999999999999999


Q ss_pred             EecCCCCccchHHHHHHhh-ccC----------------CCCcceEEeCCCCCCCCCCCceeeeehhhhhhccCCCCCee
Q 020526          244 LCGGTTSMTGFEDRFQKEA-GLC----------------SSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQH  306 (325)
Q Consensus       244 l~GG~s~~~G~~~rl~~eL-~~~----------------~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~l~~~~~~~  306 (325)
                      |+||+|++|||.+||++|| .+.                |...++++..+|+      |.+++|+|||++|++++|+++|
T Consensus       321 L~GG~s~~pg~~~rl~~el~~~~~~~~~~~~~~~~~~~~p~~~~v~v~~~~~------~~~~~w~Ggsilasl~~f~~~~  394 (418)
T 1k8k_A          321 LSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHM------QRYAVWFGGSMLASTPEFYQVC  394 (418)
T ss_dssp             EESGGGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCTT------CTTHHHHHHHHHTTSHHHHHHS
T ss_pred             EeCCccccccHHHHHHHHHHHhhccccccccccccccCCCCceeEEEeCCCc------cccceeHhHHHHHcCccHhheE
Confidence            9999999999999999999 764                5677899999888      8999999999999999999999


Q ss_pred             eeHHHHhhcCcchhhcccC
Q 020526          307 ITKADYDESGPSVVHRKCF  325 (325)
Q Consensus       307 itk~ey~e~G~~~~~~k~~  325 (325)
                      |||+||+|+|+++++|||+
T Consensus       395 itk~ey~e~G~~~~~~~~~  413 (418)
T 1k8k_A          395 HTKKDYEEIGPSICRHNPV  413 (418)
T ss_dssp             EEHHHHHHHCGGGGGCCCC
T ss_pred             EEHHHHhhhCHHHHhhhcc
Confidence            9999999999999999873

>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A*

Probab=100.00  E-value=4.6e-54  Score=413.63  Aligned_cols=282  Identities=18%  Similarity=0.336  Sum_probs=231.1

Q ss_pred             cccccCccccc-c-Cce-eccccCCeec----C-------HHHHHHHHHHHHHh-ccCCCCCC---CceEEEEcCCCCCH
Q 020526           39 GSSSVDNSTLV-E-DVT-VDPVVRGFIR----D-------WDAMEDLLHHVLYA-GLGWEEGN---EGQILFTDPLCSPK  100 (325)
Q Consensus        39 ~~~g~~~~~~~-~-~~~-~~p~~~g~i~----d-------~~~~~~il~~~~~~-~l~~~~~~---~~~vll~~~~~~~~  100 (325)
                      .++| ++|..+ + .+. ++|+++|.|.    |       ||.++.+|+|+|.+ .|++++ .   ++|+|+++|+++++
T Consensus       157 ~~VG-dEA~~~~r~~l~l~~PI~~GvI~~~s~Dy~s~q~~WD~mE~Iw~y~f~~~~L~V~p-~~~~e~pVLLTEPplnp~  234 (655)
T 4am6_A          157 LYYG-SDALRCVDEKFVIRKPFRGGSFNVKSPYYKSLAELISDVTKLLEHALNSETLNVKP-TKFNQYKVVLVIPDIFKK  234 (655)
T ss_dssp             CEEH-HHHHTBCTTTEEEECSEETTEECTTCSSCSSHHHHHHHHHHHHHHHHBSSSCBCCG-GGGGGCEEEEEECTTCCH
T ss_pred             EEEe-hHHhhCCccCeEEeccccCCEecccCCccccccccHHHHHHHHHHHhccccccccc-cccCCCcEEEEeCCCCCH
Confidence            4456 666542 2 455 4999999998    8       99999999999984 899888 5   89999999999999


Q ss_pred             HHHHHHHHHhhhhcCCCeEEEechhhhhhhhcC-CceEEEEEcCCCceEEEEeecCeeccccceeecCcch---------
Q 020526          101 AVREQLVQLMFETFNISGFYSSEQAVLSLYAVG-RISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGDE---------  170 (325)
Q Consensus       101 ~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g-~~tglVVdiG~~~t~v~pv~~G~~i~~~~~~~~~ge~---------  170 (325)
                      ..|+++++++||.|++|+++++.++++|+|++| .++|+|||+|++.|+|+||++|+++.++++++++|.+         
T Consensus       235 ~~REkm~EIlFE~fgvpavyl~~qavlAlyasGl~ttGLVVDiG~g~T~VvPV~eG~vl~~ai~rL~iGG~dLT~yL~kL  314 (655)
T 4am6_A          235 SHVETFIRVLLTELQFQAVAIIQESLATCYGAGISTSTCVVNIGAAETRIACVDEGTVLEHSAITLDYGGDDITRLFALF  314 (655)
T ss_dssp             HHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHSCCSSCEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCCeeeeccHHHHHHHhCCCCCceEEEcCCCceEEEEEEeCCEEEhhheeeecchHHHHHHHHHHH
Confidence            999999999999999999999999999999999 6999999999999999999999999999999999922         


Q ss_pred             ----------------------------hchhhhcc-cCCcceE--ECCCC----cEEEecceeeccccccccCCCCCC-
Q 020526          171 ----------------------------LAYEKTQK-SCEIEQH--TLPDG----QVIRIGKERYTVGEALFQPSILGL-  214 (325)
Q Consensus       171 ----------------------------~~~~~~~~-~~~~~~~--~lpd~----~~i~l~~e~~~~~E~lF~p~~~~~-  214 (325)
                                                  .||..... ..+...|  ..|++    ..+.++.|+|.+||+||+|.+++. 
T Consensus       315 L~~rgypy~~~~f~t~~e~eiVrdIKEk~CyVs~~Di~~q~~~f~~r~P~~~~~ky~i~vgdErflaPe~lF~Pei~~~~  394 (655)
T 4am6_A          315 LLQSDFPLQDWKIDSKHGWLLAERLKKNFTTFQDADVAVQLYNFMNRSPNQPTEKYEFKLFDEVMLAPLALFFPQIFKLI  394 (655)
T ss_dssp             HHHTTCSCCSCCTTSHHHHHHHHHHHHHHCCCCGGGCCSEEEEEEECCSSSCEEEEEEEESSHHHHHHHGGGSTHHHHHT
T ss_pred             HHHcCCCccccCCCCcchHHHHHHHHHheEEEcccchhhhhhcceeccCCCCCcceEEEECCeehhCchhcCChhhcccc
Confidence                                        11111100 0111222  24654    368899999999999999864310 


Q ss_pred             -----------------------------------------------c-------------------------------C
Q 020526          215 -----------------------------------------------E-------------------------------A  216 (325)
Q Consensus       215 -----------------------------------------------~-------------------------------~  216 (325)
                                                                     +                               .
T Consensus       395 ~~~~~~~~~~~~~~~~s~d~y~~~~nd~~S~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (655)
T 4am6_A          395 RTSSHKNSSLEFQLPESRDLFTNELNDWNSLSQFESKEGNLYCDLNDDLKILNRILDAHNIIDQLQDKPENYGNTLKENF  474 (655)
T ss_dssp             SCCCCCCHHHHTTSCCCBCTTTCCBCSCCCHHHHHHHTTCCGGGCCSHHHHHHHHHHHHHHHHHHHTSSCSCSCSSCCCC
T ss_pred             cccccccchhhhhcCccccccCCCCCCccchhHHhhhccccCCCCccHhhhhhhhhcccccccccccCCccccccccccc
Confidence                                                           0                               1


Q ss_pred             CcHHHHHHHHHHh-C-ChHHHH--hccccEEEecCCCCccchHHHHHHhh-ccCCC------------------------
Q 020526          217 HGIVEQLVHTIST-V-SSENHR--QLLENTVLCGGTTSMTGFEDRFQKEA-GLCSS------------------------  267 (325)
Q Consensus       217 ~~i~~~I~~~i~~-~-~~d~r~--~l~~nIil~GG~s~~~G~~~rl~~eL-~~~~~------------------------  267 (325)
                      .+|-++|+++|.+ | ..|.++  ++|+||+++||+|++|||...|+..| ...|.                        
T Consensus       475 ~pLdkAIi~SIt~a~~~~d~~k~~~~y~nilivGggski~g~~~~L~dri~i~rp~~~s~~~~~~~~~~~~~~~~~~~~~  554 (655)
T 4am6_A          475 APLEKAIVQSIANASITADVTRMNSFYSNILIVGGSSKIPALDFILTDRINIWRPSLLSSASFPQFYKKLTKEIKDLEGH  554 (655)
T ss_dssp             CCHHHHHHHHHHHHHHTSCGGGHHHHHTCEEEESTTCCCTTHHHHHHHHHHHHSCSTTTBTTHHHHHHHHHHHHHHHHST
T ss_pred             ccHHHHHHHHHHhhhccccHHHHHHHhhcEEEEcCcccCccHHHHHHHHHHhhCcccccccccHHHHHHHHHhhhhhhhh
Confidence            4889999999984 3 225544  99999999999999999998888777 43331                        


Q ss_pred             -------------------------------------------CcceEEeCCCCCCCCCCCceeeeehhhhhhccCCCCC
Q 020526          268 -------------------------------------------AIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQN  304 (325)
Q Consensus       268 -------------------------------------------~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~l~~~~~  304 (325)
                                                                 -++|+|+.+|.   ..+|++++|+|||+||++++|++
T Consensus       555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~V~~~p~---~~d~~~~~W~GgSvla~l~~f~e  631 (655)
T 4am6_A          555 YVNAPDKTEDENKQILQAQIKEKIVEELEEQHQNIEHQNGNEHIFPVSIIPPPR---DMNPALIIWKGASVLAQIKLVEE  631 (655)
T ss_dssp             TCSCCSSSCCSSTTSTTHHHHHHHHHHHHHHHHHHHHTTSCCCBCCCCEECCCT---TSCGGGHHHHHHHHHTTSHHHHH
T ss_pred             hccccccccccchhhhhhhhhhhhhhhhhhhhhhhhhccccCCceeeEEeCCcc---ccCcceeEEecceeeeecccHhh
Confidence                                                       13489999998   44569999999999999999999


Q ss_pred             eeeeHHHHhhcCcchhhcccC
Q 020526          305 QHITKADYDESGPSVVHRKCF  325 (325)
Q Consensus       305 ~~itk~ey~e~G~~~~~~k~~  325 (325)
                      +||||+||+|+|++++++||+
T Consensus       632 ~wIt~~Eyde~G~~il~~k~~  652 (655)
T 4am6_A          632 LFITNSDWDVHGSRILQYKCI  652 (655)
T ss_dssp             HCEEHHHHHHHGGGGGGTSCS
T ss_pred             eeecHHHHhhhcchheEeccc
Confidence            999999999999999999994

>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A

Probab=99.97  E-value=3.5e-30  Score=237.71  Aligned_cols=274  Identities=15%  Similarity=0.185  Sum_probs=207.0

Q ss_pred             ceEEEEcCCCcEEEeeeCCCCCCcEecccceeecCC--C-cccccCcccccc-----Cce-eccccCCeecCHHHHHHHH
Q 020526            2 EAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLE--D-GSSSVDNSTLVE-----DVT-VDPVVRGFIRDWDAMEDLL   72 (325)
Q Consensus         2 ~~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~~--~-~~~g~~~~~~~~-----~~~-~~p~~~g~i~d~~~~~~il   72 (325)
                      ++|+||+||.++++|++ ++. |...+||+++...+  + .++| ++|....     +.. .+|+++|.+.||+..+.+|
T Consensus         4 ~~igIDlGT~~s~v~~~-~~~-~~~~~PS~v~~~~~~~~~~~vG-~~A~~~~~~~~~~~~~~~p~~~g~i~~~~~~~~i~   80 (344)
T 1jce_A            4 KDIGIDLGTANTLVFLR-GKG-IVVNEPSVIAIDSTTGEILKVG-LEAKNMIGKTPATIKAIRPMRDGVIADYTVALVML   80 (344)
T ss_dssp             CEEEEEECSSEEEEEET-TTE-EEEEEESCEEEETTTCCEEEES-HHHHTTTTCCCTTEEEECCEETTEESSHHHHHHHH
T ss_pred             ceEEEEcCcCcEEEEEC-CCC-EEEeeCcEEEEecCCCcEEEEc-HHHHHhcccCCCCeEEEecCCCCeeCChHHHHHHH
Confidence            57899999999999999 764 77889999986543  2 4689 8775432     333 4899999999999999999


Q ss_pred             HHHHHhccCCC-CCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCC-----ceEEEEEcCCCc
Q 020526           73 HHVLYAGLGWE-EGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGK  146 (325)
Q Consensus        73 ~~~~~~~l~~~-~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVdiG~~~  146 (325)
                      .+++.+..... . ...+++++.|...+...|+.+.+ ++|.++++.+.++++|.+|+++++.     .+.+|||+|+++
T Consensus        81 ~~~l~~~~~~~~~-~~~~~vitvP~~~~~~~r~~~~~-a~~~aG~~~~~li~ep~Aaa~~~~~~~~~~~~~lVvDiGggt  158 (344)
T 1jce_A           81 RYFINKAKGGMNL-FKPRVVIGVPIGITDVERRAILD-AGLEAGASKVFLIEEPMAAAIGSNLNVEEPSGNMVVDIGGGT  158 (344)
T ss_dssp             HHHHHHHHTSCCS-CCCEEEEEECTTCCHHHHHHHHH-HHHHTTCSEEEEEEHHHHHHHHTTCCTTSSSCEEEEEECSSC
T ss_pred             HHHHHHHhhcccc-CCCeEEEEECCCCCHHHHHHHHH-HHHHcCCCeEeccCCHHHHHHhcCCCCCCCceEEEEEeCCCe
Confidence            99996533323 4 46899999999999999999988 5699999999999999999999986     689999999999


Q ss_pred             eEEEEeecCeeccccceeecCcch------h-----ch------h-----hh-cccCC------cceEEC-----CCCc-
Q 020526          147 IDIAPVIEGAVQHIASRRFEVGDE------L-----AY------E-----KT-QKSCE------IEQHTL-----PDGQ-  191 (325)
Q Consensus       147 t~v~pv~~G~~i~~~~~~~~~ge~------~-----~~------~-----~~-~~~~~------~~~~~l-----pd~~-  191 (325)
                      |.++++..|.++.  ....++|.+      .     .|      .     |. .....      ...+.+     .+|. 
T Consensus       159 tdvsv~~~~~~~~--~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~ae~~K~~l~~~~~~~~~~~~~~~~~~~~~~~g~~  236 (344)
T 1jce_A          159 TEVAVISLGSIVT--WESIRIAGDEMDEAIVQYVRETYRVAIGERTAERVKIEIGNVFPSKENDELETTVSGIDLSTGLP  236 (344)
T ss_dssp             EEEEEEETTEEEE--EEEESCSHHHHHHHHHHHHHHHHCEECCHHHHHHHHHHHCBCSCCHHHHHCEEEEEEEETTTTEE
T ss_pred             EEEEEEEcCCEEe--eCCCCccChhHHHHHHHHHHHHhCcccCHHHHHHHHHHHhccCccccCCcceEEEeccccCCCCc
Confidence            9999999998764  356777721      0     01      0     00 00000      012333     2453 


Q ss_pred             -EEEecceeeccccccccCCCCCCcCCcHHHHHHHHHHhCChHHHHhcc-ccEEEecCCCCccchHHHHHHhhccCCCCc
Q 020526          192 -VIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLL-ENTVLCGGTTSMTGFEDRFQKEAGLCSSAI  269 (325)
Q Consensus       192 -~i~l~~e~~~~~E~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~-~nIil~GG~s~~~G~~~rl~~eL~~~~~~~  269 (325)
                       .+.++.+++.   .+|+|..     ..+.+.|.++|.+++.+++++++ ++|+|+||+|++|||.++|++++     ..
T Consensus       237 ~~~~i~~~~~~---~~~~~~~-----~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~~-----~~  303 (344)
T 1jce_A          237 RKLTLKGGEVR---EALRSVV-----VAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKET-----GI  303 (344)
T ss_dssp             EEEEEEHHHHH---HHTHHHH-----HHHHHHHHHHHHTSCHHHHHHHHHHCEEEESGGGCSBTHHHHHHHHH-----SS
T ss_pred             eeEEEeHHHHH---HHHHHHH-----HHHHHHHHHHHHhCCchhccchhhCcEEEECccccchHHHHHHHHHH-----CC
Confidence             3444444432   3454431     47889999999999999888888 79999999999999999999999     22


Q ss_pred             ceEEeCCCCCCCCCCCceeeeehhhhhhc-cCCCC
Q 020526          270 RPTLVKPPEYMPENLTLYSAWIGGAILAK-VVFPQ  303 (325)
Q Consensus       270 ~v~v~~~~~~~~~~~~~~~~W~G~si~a~-l~~~~  303 (325)
                      ++.+  +++      |.+++|.|+++++. +++|+
T Consensus       304 ~v~~--~~~------p~~ava~Gaa~~a~~~~~~~  330 (344)
T 1jce_A          304 SVIR--SEE------PLTAVAKGAGMVLDKVNILK  330 (344)
T ss_dssp             CEEE--CSS------TTTHHHHHHHHGGGCHHHHT
T ss_pred             Cccc--cCC------hHHHHHHHHHHHHhChHHHH
Confidence            3333  334      67999999999998 45553

>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}

Probab=99.82  E-value=4.5e-20  Score=164.32  Aligned_cols=236  Identities=16%  Similarity=0.141  Sum_probs=155.7

Q ss_pred             eEEEEcCCCcEEEeeeCCCCCCcEecccceeecCCCcccccCccccccCceeccccCCeecCHHHHHHHHHHHHHhccCC
Q 020526            3 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTVDPVVRGFIRDWDAMEDLLHHVLYAGLGW   82 (325)
Q Consensus         3 ~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~~~~~~g~~~~~~~~~~~~~p~~~g~i~d~~~~~~il~~~~~~~l~~   82 (325)
                      .++||+||.++|+.+. .++. ..     ++.       + ..       ...|+++|.+.||+..+.+|++++......
T Consensus        30 ~~gIDiGS~s~k~vi~-~~~~-~~-----l~~-------~-~~-------~~~~l~~g~i~d~~~~~~~l~~~~~~~~~~   87 (272)
T 3h1q_A           30 KVGVDLGTADIVLVVT-DQEG-IP-----VAG-------A-LK-------WASVVKDGLVVDYIGAIQIVRELKAKVERL   87 (272)
T ss_dssp             EEEEECCSSEEEEEEE-CTTC-CE-----EEE-------E-EE-------ECCCCBTTBCTTHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEcccceEEEEEE-CCCC-cE-----EEE-------E-ee-------cccccCCCEEEcHHHHHHHHHHHHHHHHHh
Confidence            4799999999999887 3322 11     110       0 00       026889999999999999999998653322


Q ss_pred             CCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCCceEEEEEcCCCceEEEEeecCeeccccc
Q 020526           83 EEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIAS  162 (325)
Q Consensus        83 ~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVdiG~~~t~v~pv~~G~~i~~~~  162 (325)
                      .......++++.|.......| +.++.+++.++++...++.++.++++++|..+++|||+|+++|.++++.+|.++..  
T Consensus        88 ~~~~~~~~v~tvp~~~~~~~~-~~~~~~~~~~g~~~~~i~~e~~A~a~~~~~~~~~viDiGggst~~~~~~~g~~~~~--  164 (272)
T 3h1q_A           88 LGSELFQAATAIPPGTVGRNA-EACGHVVAGAGLELVTLVDEPVAAARALGINDGIVVDIGGGTTGIAVIEKGKITAT--  164 (272)
T ss_dssp             SSSCCCEEEEECCSCC---CT-THHHHHHHHTTCEEEEEECHHHHHHHHHTCSSEEEEEECSSCEEEEEEETTEEEEE--
T ss_pred             cCCccCeEEEEcCCCCCHHHH-HHHHHHHHHcCCeeeecccHHHHHHHHHcCCCEEEEEECCCcEEEEEEECCEEEEE--
Confidence            121335667777766555444 45666889999999999999999999999999999999999999999999998743  


Q ss_pred             eeecCcch-hch--hhhcc----cCCcceEECCCCcEEEecceeeccccccccCCCCCCcCCcHHHHHHHHHHhCChHHH
Q 020526          163 RRFEVGDE-LAY--EKTQK----SCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENH  235 (325)
Q Consensus       163 ~~~~~ge~-~~~--~~~~~----~~~~~~~~lpd~~~i~l~~e~~~~~E~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r  235 (325)
                      ..+++|.. .+.  .+...    ......-.+..      ..+...+.+.++         ..+.+.|.+.+++++    
T Consensus       165 ~~~~~Gg~~~~~~l~~~l~~~~~~ae~~k~~~~~------~~~~~~~~~~~~---------~~i~~~i~~~l~~~~----  225 (272)
T 3h1q_A          165 FDEPTGGTHLSLVLAGSYKIPFEEAETIKKDFSR------HREIMRVVRPVI---------EKMALIVKEVIKNYD----  225 (272)
T ss_dssp             CCBSCCHHHHHHHHHHHHTCCHHHHHHHHHSSTT------HHHHHHHHHHHH---------HHHHHHHHHHTTTSC----
T ss_pred             ecCCCcHHHHHHHHHHHhCCCHHHHHHHHHhcCC------HHHHHHHHHHHH---------HHHHHHHHHHHHhcC----
Confidence            56667722 000  00000    00000000000      000111111222         356666777777665    


Q ss_pred             HhccccEEEecCCCCccchHHHHHHhhccCCCCcceEEeCCCCCCCCCCCceeeeehhhhhh
Q 020526          236 RQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILA  297 (325)
Q Consensus       236 ~~l~~nIil~GG~s~~~G~~~rl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a  297 (325)
                        ...+|+|+||+|++|||.++|++++       ...+..+++      |.++.|+|++++|
T Consensus       226 --~~~~ivL~GG~a~~~~l~~~l~~~l-------~~~v~~~~~------p~~a~a~Gaal~a  272 (272)
T 3h1q_A          226 --QTLPVYVVGGTAYLTGFSEEFSRFL-------GKEVQVPIH------PLLVTPLGIALFG  272 (272)
T ss_dssp             --SSCCEEEESGGGGSTTHHHHHHHHH-------SSCCBCCSS------GGGHHHHHHHTTC
T ss_pred             --CCCEEEEECCccchhhHHHHHHHHh-------CCCccccCC------hHHHHHHHHHhcC
Confidence              2458999999999999999999999       222333444      8899999999875

>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}

Probab=99.76  E-value=2.8e-18  Score=165.90  Aligned_cols=265  Identities=15%  Similarity=0.171  Sum_probs=173.9

Q ss_pred             ceEEEEcCCCcEEEeeeCCCCCCcEe--------cccceeecCCCcccccCcccccc--------Ccee---cccc---C
Q 020526            2 EAAVVDAGSKLLKAGPAIPDQAPSMV--------IPSQMKRVLEDGSSSVDNSTLVE--------DVTV---DPVV---R   59 (325)
Q Consensus         2 ~~vViD~Gs~~~k~G~a~gd~~P~~~--------~ps~~~~~~~~~~~g~~~~~~~~--------~~~~---~p~~---~   59 (325)
                      ++|.||+||.+++++++ .+..|..+        +||.++...++.++| +++....        .+.+   .|++   +
T Consensus         3 ~~iGIDlGTt~s~va~~-~~g~~~ii~n~~g~~~~PS~V~~~~~~~~vG-~~A~~~~~~~p~~~~~~Kr~lg~p~~~~~~   80 (509)
T 2v7y_A            3 KIIGIDLGTTNSCVAVL-EGGEVKVIPNPEGNRTTPSVVAFKNGERLVG-EVAKRQAITNPNTIISIKRHMGTDYKVEIE   80 (509)
T ss_dssp             CEEEEEECSSEEEEEEE-ETTEEEECCCTTSCSSEECEEEESSSSEEES-HHHHTTTTTCSSEEECGGGTTTSCCCEEET
T ss_pred             CEEEEEcCCceEEEEEE-ECCEEEEEECCCCCcccceEEEECCCcEEEC-HHHHHhHHhCCCcHHHHHHhcCCCcEEEEC
Confidence            46899999999999999 77778776        888887644456778 6653321        1111   2665   6


Q ss_pred             CeecCHHHHHHHHHHHHHh-------ccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhc
Q 020526           60 GFIRDWDAMEDLLHHVLYA-------GLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAV  132 (325)
Q Consensus        60 g~i~d~~~~~~il~~~~~~-------~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~  132 (325)
                      |.  +|. .+.++.++|.+       .++  . ....++++.|...+..+|+.+.+. ++..|++.+.++++|.||++++
T Consensus        81 g~--~~~-~~ei~a~~L~~l~~~ae~~l~--~-~~~~~VitvPa~~~~~qr~a~~~a-~~~AGl~~~~li~Ep~AAAlay  153 (509)
T 2v7y_A           81 GK--QYT-PQEISAIILQYLKSYAEDYLG--E-PVTRAVITVPAYFNDAQRQATKDA-GRIAGLEVERIINEPTAAALAY  153 (509)
T ss_dssp             TE--EEC-HHHHHHHHHHHHHHHHHHHHT--S-CCCEEEEEECTTCCHHHHHHHHHH-HHHTTCEEEEEEEHHHHHHHHT
T ss_pred             CE--EEc-HHHHHHHHHHHHHHHHHHHhC--C-CCCeEEEEECCCCCHHHHHHHHHH-HHHcCCCeEEEecCHHHHHHHH
Confidence            64  333 34444444432       222  2 347899999999999999998886 5889999999999999999998


Q ss_pred             CC-----ceEEEEEcCCCceEEEEee--cCee-ccccceeecCcch-----------h--------chhh----------
Q 020526          133 GR-----ISGCTVDIGHGKIDIAPVI--EGAV-QHIASRRFEVGDE-----------L--------AYEK----------  175 (325)
Q Consensus       133 g~-----~tglVVdiG~~~t~v~pv~--~G~~-i~~~~~~~~~ge~-----------~--------~~~~----------  175 (325)
                      |.     .+.+|+|+|++++.++.+.  +|.. +........+|..           .        +...          
T Consensus       154 ~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a~~g~~~lGG~d~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~  233 (509)
T 2v7y_A          154 GLDKEEDQTILVYDLGGGTFDVSILELGDGVFEVKATAGDNHLGGDDFDQVIIDYLVNQFKQEHGIDLSKDKMALQRLKD  233 (509)
T ss_dssp             TGGGSCSEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCGGGCHHHHHHHHH
T ss_pred             hhccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEecCCCCcCHHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHH
Confidence            75     4789999999999999776  3543 2222334566611           0        0000          


Q ss_pred             ------h-cccCCcceEECC------CC---cEEEecceeeccccccccCCCCCCcCCcHHHHHHHHHHhCChHHHHhcc
Q 020526          176 ------T-QKSCEIEQHTLP------DG---QVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLL  239 (325)
Q Consensus       176 ------~-~~~~~~~~~~lp------d~---~~i~l~~e~~~~~E~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~  239 (325)
                            . ........+.+|      +|   ..+.++.+.|   |.+|+|..     ..+.+.|.++|..+..  .....
T Consensus       234 ~aE~~K~~ls~~~~~~i~l~~~~~~~~G~~~~~~~itr~~f---e~l~~~~~-----~~i~~~i~~~L~~a~~--~~~~i  303 (509)
T 2v7y_A          234 AAEKAKKELSGVTQTQISLPFISANENGPLHLEMTLTRAKF---EELSAHLV-----ERTMGPVRQALQDAGL--TPADI  303 (509)
T ss_dssp             HHHHHHHHTTTCSEEEEEEEEEEEETTEEEEEEEEEEHHHH---HHHTHHHH-----HTTHHHHHHHHHHHTC--CGGGC
T ss_pred             HHHHHHHhcCCCCcEEEEEeccccCCCCCeeEEEEEEHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCC--ChhHC
Confidence                  0 000111222222      12   1123332222   33444421     4577888888887753  34557


Q ss_pred             ccEEEecCCCCccchHHHHHHhhccCCCCcceEEeCCCCCCCCCCCceeeeehhhhhhc
Q 020526          240 ENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAK  298 (325)
Q Consensus       240 ~nIil~GG~s~~~G~~~rl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~  298 (325)
                      ++|+|+||+|++|++.+++++.+.       ..+..+++      |..++|.||+++|.
T Consensus       304 ~~VvLvGG~s~~p~v~~~l~~~f~-------~~~~~~~~------p~~aVa~Gaa~~a~  349 (509)
T 2v7y_A          304 DKVILVGGSTRIPAVQEAIKRELG-------KEPHKGVN------PDEVVAIGAAIQGG  349 (509)
T ss_dssp             SEEEEESGGGGCHHHHHHHHHHHS-------SCCBCCSC------TTTHHHHHHHHHHH
T ss_pred             cEEEEECCcccChHHHHHHHHHhC-------CCcCcCCC------chhhhHhhHHHHHH
Confidence            899999999999999999999981       12233444      77999999999986

>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1

Probab=99.69  E-value=7.6e-17  Score=150.43  Aligned_cols=270  Identities=16%  Similarity=0.162  Sum_probs=165.7

Q ss_pred             Cc-eEEEEcCCCcEEEeeeCCCCCCcEe--------cccceeecC-CCcccccCccccc-------------c----Cc-
Q 020526            1 ME-AAVVDAGSKLLKAGPAIPDQAPSMV--------IPSQMKRVL-EDGSSSVDNSTLV-------------E----DV-   52 (325)
Q Consensus         1 m~-~vViD~Gs~~~k~G~a~gd~~P~~~--------~ps~~~~~~-~~~~~g~~~~~~~-------------~----~~-   52 (325)
                      |. .|-||+||.++.+++. .+..|..+        +||.++... ++..+| +++...             +    .+ 
T Consensus         1 m~~~vGIDlGTt~s~va~~-~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~~G-~~A~~~~~~~~~~~~~~~k~~lg~~~~   78 (383)
T 1dkg_D            1 MGKIIGIDLGTTNSCVAIM-DGTTPRVLENAEGDRTTPSIIAYTQDGETLVG-QPAKRQAVTNPQNTLFAIKRLIGRRFQ   78 (383)
T ss_dssp             --CCCEEECCSSEEEEEEE-ETTEEEECCCTTSCSEEECEEEECTTSCEEES-HHHHTTSTTCGGGEEECGGGTTTCBSC
T ss_pred             CCcEEEEEcCCCCEEEEEE-ECCeeEEEECCCCCcccceEEEEECCCCEEEC-HHHHHhhhhCccceeehhHHhhCCCCC
Confidence            44 4679999999999998 55445444        677765432 334455 333110             0    00 


Q ss_pred             --------eecccc-------------CCeecC-HHHHHHHHHHHHH---hccCCCCCCCceEEEEcCCCCCHHHHHHHH
Q 020526           53 --------TVDPVV-------------RGFIRD-WDAMEDLLHHVLY---AGLGWEEGNEGQILFTDPLCSPKAVREQLV  107 (325)
Q Consensus        53 --------~~~p~~-------------~g~i~d-~~~~~~il~~~~~---~~l~~~~~~~~~vll~~~~~~~~~~r~~l~  107 (325)
                              ..+|+.             +|.... .+....+++++..   ..++.   ....++++.|...+..+|+.+.
T Consensus        79 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~i~~~~L~~l~~~a~~~~~~---~~~~~vitvP~~~~~~~r~~~~  155 (383)
T 1dkg_D           79 DEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGE---PVTEAVITVPAYFNDAQRQATK  155 (383)
T ss_dssp             SHHHHHHTTTCSSEEEECSSSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHSS---CCCEEEECBCTTCCHHHHHHHH
T ss_pred             cHHHHHHhhcCCeEEEEcCCCcEEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCC---CCCeEEEEECCCCCHHHHHHHH
Confidence                    012332             333222 3334445555432   22332   3467999999999999999988


Q ss_pred             HHhhhhcCCCeEEEechhhhhhhhcCCc------eEEEEEcCCCceEEEEeecC------eec-cccceeecCcch----
Q 020526          108 QLMFETFNISGFYSSEQAVLSLYAVGRI------SGCTVDIGHGKIDIAPVIEG------AVQ-HIASRRFEVGDE----  170 (325)
Q Consensus       108 ~~lfe~~~~~~v~~~~~~~~a~~~~g~~------tglVVdiG~~~t~v~pv~~G------~~i-~~~~~~~~~ge~----  170 (325)
                      +. ++..+++.+.++.+|.+|+++++..      +.+|||+|+++|.++.+..+      ... .......++|..    
T Consensus       156 ~a-~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lVvD~Gggttdvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~id~  234 (383)
T 1dkg_D          156 DA-GRIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDS  234 (383)
T ss_dssp             HH-HHHTTCEESCCCBHHHHHHHHHTCCC-CCEEEEEEEEECSSCEEEEEEEEEC----CCCEEEEEEEESSCSHHHHHH
T ss_pred             HH-HHHcCCceEEEeccHHHHHHHHHhccCCCCcEEEEEEcCCCeEEEEEEEEEecCCCCeEEEEEEeCCCCCCHHHHHH
Confidence            86 5889999999999999999988653      68999999999999987644      211 112234567721    


Q ss_pred             -------hchh------------------------hh-cccCCcceEE------CCCC-c--EEEecceeeccccccccC
Q 020526          171 -------LAYE------------------------KT-QKSCEIEQHT------LPDG-Q--VIRIGKERYTVGEALFQP  209 (325)
Q Consensus       171 -------~~~~------------------------~~-~~~~~~~~~~------lpd~-~--~i~l~~e~~~~~E~lF~p  209 (325)
                             ..+.                        |. ........+.      .++| .  .+.++.+.+   |.+|+|
T Consensus       235 ~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~i~i~~~~~~~~G~~~~~~~it~~~~---~~~~~~  311 (383)
T 1dkg_D          235 RLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKL---ESLVED  311 (383)
T ss_dssp             HHHHHHHHHHHHHHCCCSTTCHHHHHHHHHHHHHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHH---HHHSHH
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEecccccCCCCeeEEEEEeHHHH---HHHHHH
Confidence                   0000                        00 0000111112      2223 1  123333322   234444


Q ss_pred             CCCCCcCCcHHHHHHHHHHhCChHHHHhccccEEEecCCCCccchHHHHHHhhccCCCCcceEEeCCCCCCCCCCCceee
Q 020526          210 SILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSA  289 (325)
Q Consensus       210 ~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~  289 (325)
                      ..     ..+.+.|.++|.+++.  +....++|+|+||+|++||+.++|++++.       ..+..+++      |.+++
T Consensus       312 ~~-----~~i~~~i~~~l~~~~~--~~~~i~~IvL~GG~s~~p~l~~~l~~~~~-------~~v~~~~~------p~~av  371 (383)
T 1dkg_D          312 LV-----NRSIELLKVALQDAGL--SVSDIDDVILVGGQTRMPMVQKKVAEFFG-------KEPRKDVN------PDEAV  371 (383)
T ss_dssp             HH-----HHHHHHHHHHHHTTTC--CTTTCCEEEEESGGGGSHHHHHHHHHHHS-------SCCBCSSC------TTTHH
T ss_pred             HH-----HHHHHHHHHHHHHcCC--CHhhCCEEEEecCccccHHHHHHHHHHhC-------CCCCCCcC------hHHHH
Confidence            21     4688888999988863  34556899999999999999999999991       12333444      78999


Q ss_pred             eehhhhhhcc
Q 020526          290 WIGGAILAKV  299 (325)
Q Consensus       290 W~G~si~a~l  299 (325)
                      |.||+++|.+
T Consensus       372 a~Gaa~~a~~  381 (383)
T 1dkg_D          372 AIGAAVQGGV  381 (383)
T ss_dssp             HHHHHHHTTT
T ss_pred             HHHHHHHHHh
Confidence            9999999875

>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...

Probab=99.67  E-value=4.1e-16  Score=146.45  Aligned_cols=270  Identities=17%  Similarity=0.180  Sum_probs=160.8

Q ss_pred             CceEEEEcCCCcEEEeeeCCCCCCcE--------ecccceeecCCCcccccCcccccc---------Cc-----------
Q 020526            1 MEAAVVDAGSKLLKAGPAIPDQAPSM--------VIPSQMKRVLEDGSSSVDNSTLVE---------DV-----------   52 (325)
Q Consensus         1 m~~vViD~Gs~~~k~G~a~gd~~P~~--------~~ps~~~~~~~~~~~g~~~~~~~~---------~~-----------   52 (325)
                      |..|-||+||.++++++. .+..|..        .+||.+....+..++| +++....         ++           
T Consensus        23 ~~viGID~GTt~s~va~~-~~g~~~ii~~~~g~~~~PS~v~~~~~~~~vG-~~A~~~~~~~~~~~~~~~Kr~lg~~~~~~  100 (404)
T 3i33_A           23 MPAIGIDLGTTYSCVGVF-QHGKVEIIANDQGNRTTPSYVAFTDTERLIG-DAAKNQVAMNPTNTIFDAKRLIGRKFEDA  100 (404)
T ss_dssp             CCCEEEEECSSEEEEEEE-ETTEEEECCCTTSCSSEECCEEECSSCEEET-HHHHHTTTTCSTTEECCGGGTTTCCTTSH
T ss_pred             CCEEEEEcCCccEEEEEE-ECCeeEEEECCCCCcccceEEEECCCCEEec-HHHHHhhHhChhhhHHHHHHHhCCCCCcH
Confidence            678999999999999999 5554543        3467665544455566 5442110         00           


Q ss_pred             ------eecccc--------------CC---eecCHHHHHHHHHHHHH---hccCCCCCCCceEEEEcCCCCCHHHHHHH
Q 020526           53 ------TVDPVV--------------RG---FIRDWDAMEDLLHHVLY---AGLGWEEGNEGQILFTDPLCSPKAVREQL  106 (325)
Q Consensus        53 ------~~~p~~--------------~g---~i~d~~~~~~il~~~~~---~~l~~~~~~~~~vll~~~~~~~~~~r~~l  106 (325)
                            ..+|..              .|   .+.-.+....+++++..   ..++.   .-..++++.|...+...|+.+
T Consensus       101 ~~~~~~~~~p~~~~~~~g~~~~~v~~~~~~~~~~~~ei~a~~L~~l~~~a~~~~~~---~~~~~vitvPa~~~~~~r~~~  177 (404)
T 3i33_A          101 TVQSDMKHWPFRVVSEGGKPKVQVEYKGETKTFFPEEISSMVLTKMKEIAEAYLGG---KVHSAVITVPAYFNDSQRQAT  177 (404)
T ss_dssp             HHHHHHTTCSSEEEEETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHSS---CCCEEEEEECTTCCHHHHHHH
T ss_pred             HHHHHHhhCCceEEccCCceEEEEEeCCCceEEcHHHHHHHHHHHHHHHHHHHhcc---CCCcEEEEECCCCCHHHHHHH
Confidence                  011210              01   11112233344444322   23333   336899999999999999888


Q ss_pred             HHHhhhhcCCCeEEEechhhhhhhhcCCc---------eEEEEEcCCCceEEEEee--cCee-ccccceeecCcch----
Q 020526          107 VQLMFETFNISGFYSSEQAVLSLYAVGRI---------SGCTVDIGHGKIDIAPVI--EGAV-QHIASRRFEVGDE----  170 (325)
Q Consensus       107 ~~~lfe~~~~~~v~~~~~~~~a~~~~g~~---------tglVVdiG~~~t~v~pv~--~G~~-i~~~~~~~~~ge~----  170 (325)
                      .+. ++..+++.+.++++|.||+++++..         +-+|+|+|+++|.++.+.  +|.. +........+|..    
T Consensus       178 ~~a-~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~vlV~D~GgGT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~  256 (404)
T 3i33_A          178 KDA-GTITGLNVLRIINEPTAAAIAYGLDKKGCAGGEKNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDN  256 (404)
T ss_dssp             HHH-HHHHTCEEEEEEEHHHHHHHHTTTTSSCSSSSCCEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHH
T ss_pred             HHH-HHHcCCCeEEEeccHHHHHHHHHhhcccccCCCceEEEEECCCCcEEEEEEEEeCCeEEEEEEeCCCCCCHHHHHH
Confidence            776 6889999999999999999988643         349999999999998774  3322 2222333566611    


Q ss_pred             -------hchhh------------------------h-cccCCcceEECC---CCcE--EEecceeeccccccccCCCCC
Q 020526          171 -------LAYEK------------------------T-QKSCEIEQHTLP---DGQV--IRIGKERYTVGEALFQPSILG  213 (325)
Q Consensus       171 -------~~~~~------------------------~-~~~~~~~~~~lp---d~~~--i~l~~e~~~~~E~lF~p~~~~  213 (325)
                             ..+.+                        . ........+.++   ++..  +.+..+.+   |.++.|.   
T Consensus       257 ~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~~~~~~~~~g~~~~~~i~r~~~---~~~~~~~---  330 (404)
T 3i33_A          257 RMVSHLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGVDFYTSITRARF---EELNADL---  330 (404)
T ss_dssp             HHHHHHHHHHHHHHSCCCTTCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEETTEEEEEEEEHHHH---HHHTHHH---
T ss_pred             HHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHHHHhCCcCcceEEEEeeccCCceeEEEEcHHHH---HHHHHHH---
Confidence                   00000                        0 000011111111   2221  22222211   2233221   


Q ss_pred             CcCCcHHHHHHHHHHhCChHHHHhccccEEEecCCCCccchHHHHHHhh-ccCCCCcceEEeCCCCCCCCCCCceeeeeh
Q 020526          214 LEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKPPEYMPENLTLYSAWIG  292 (325)
Q Consensus       214 ~~~~~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL-~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G  292 (325)
                        ...+.+.|.++|+.+..+  ....+.|+|+||+|++|++.++|++.+ ..       .+..+.+      |..+++.|
T Consensus       331 --~~~i~~~i~~~l~~~~~~--~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~-------~v~~~~~------p~~ava~G  393 (404)
T 3i33_A          331 --FRGTLEPVEKALRDAKLD--KGQIQEIVLVGGSTRIPKIQKLLQDFFNGK-------ELNKSIN------PDEAVAYG  393 (404)
T ss_dssp             --HHHTHHHHHHHHHHHTCC--GGGCCEEEEESGGGGCHHHHHHHHHHTTTC-------CCBCSSC------TTTHHHHH
T ss_pred             --HHHHHHHHHHHHHHcCCC--HhhCCEEEEECCccccHHHHHHHHHHcCCC-------CCCCCcC------HHHHHHHH
Confidence              135667777777765432  345688999999999999999999888 32       2333444      78999999


Q ss_pred             hhhhhcc
Q 020526          293 GAILAKV  299 (325)
Q Consensus       293 ~si~a~l  299 (325)
                      |+++|.+
T Consensus       394 aa~~a~~  400 (404)
T 3i33_A          394 AAVQAAI  400 (404)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999874

>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*

Probab=99.47  E-value=7.4e-13  Score=129.13  Aligned_cols=268  Identities=16%  Similarity=0.150  Sum_probs=159.1

Q ss_pred             ceEEEEcCCCcEEEeeeCCCCCCc--------EecccceeecCCCcccccCccccc-------------c----Cce---
Q 020526            2 EAAVVDAGSKLLKAGPAIPDQAPS--------MVIPSQMKRVLEDGSSSVDNSTLV-------------E----DVT---   53 (325)
Q Consensus         2 ~~vViD~Gs~~~k~G~a~gd~~P~--------~~~ps~~~~~~~~~~~g~~~~~~~-------------~----~~~---   53 (325)
                      ..|-||+||.++.+++. .+..|.        ..+||+++...+...+| ++|...             +    .+.   
T Consensus         5 ~~iGIDlGTt~s~va~~-~~g~~~ii~n~~g~~~~PS~V~~~~~~~~vG-~~A~~~~~~~p~~ti~~~KrllG~~~~d~~   82 (554)
T 1yuw_A            5 PAVGIDLGTTYSCVGVF-QHGKVEIIANDQGNRTTPSYVAFTDTERLIG-DAAKNQVAMNPTNTVFDAKRLIGRRFDDAV   82 (554)
T ss_dssp             CCEEEEECSSEEEEEEE-CSSSEEECCCTTSCSEEECCEEECSSCEEET-HHHHTTTTTCGGGEECCGGGTTTCCSSCSH
T ss_pred             CEEEEEeCcccEEEEEE-ECCEEEEEECCCCCeecceEEEEcCCcEEEc-HHHHHhhhhChhhehHhhHHhcCCCCCcHH
Confidence            47899999999999998 544343        23477776544445666 443210             0    000   


Q ss_pred             ------ecccc----CCee------------cC-HHHHHHHHHHHHH---hccCCCCCCCceEEEEcCCCCCHHHHHHHH
Q 020526           54 ------VDPVV----RGFI------------RD-WDAMEDLLHHVLY---AGLGWEEGNEGQILFTDPLCSPKAVREQLV  107 (325)
Q Consensus        54 ------~~p~~----~g~i------------~d-~~~~~~il~~~~~---~~l~~~~~~~~~vll~~~~~~~~~~r~~l~  107 (325)
                            .+|..    +|..            .. .+....+|+++..   ..++..   -..++++.|...+..+|+.+.
T Consensus        83 v~~~~~~~p~~v~~~~g~~~~~v~~~~~~~~~sp~ei~a~~L~~lk~~ae~~lg~~---v~~~VitVPa~f~~~qr~a~~  159 (554)
T 1yuw_A           83 VQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKT---VTNAVVTVPAYFNDSQRQATK  159 (554)
T ss_dssp             HHHHHTTCSSEEEEETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHSSC---CCEEEEEECTTCCHHHHHHHH
T ss_pred             HHHHhhcCCeEEEecCCceEEEEEECCCceEEcHHHHHHHHHHHHHHHHHHHhCCC---CCeEEEEECCCCCHHHHHHHH
Confidence                  01211    2210            11 2233344444432   234432   367999999999999998887


Q ss_pred             HHhhhhcCCCeEEEechhhhhhhhcCC-------ceEEEEEcCCCceEEEEee--cCee-ccccceeecCcch------h
Q 020526          108 QLMFETFNISGFYSSEQAVLSLYAVGR-------ISGCTVDIGHGKIDIAPVI--EGAV-QHIASRRFEVGDE------L  171 (325)
Q Consensus       108 ~~lfe~~~~~~v~~~~~~~~a~~~~g~-------~tglVVdiG~~~t~v~pv~--~G~~-i~~~~~~~~~ge~------~  171 (325)
                      + +++..|++.+.++++|.||++++|.       .+.+|+|+|++++.++.+.  +|.. +........+|..      .
T Consensus       160 ~-A~~~AGl~~~~li~EP~AAAlay~~~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a~~g~~~lGG~d~d~~l~  238 (554)
T 1yuw_A          160 D-AGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIAAGIFEVKSTAGDTHLGGEDFDNRMV  238 (554)
T ss_dssp             H-HHHTTTCEEEEEEEHHHHHHHHTTCSTTCSSCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHH
T ss_pred             H-HHHHcCCCeEEEeCcHHHHHHHHHhhccCCCCcEEEEEEcCCCeEEEEEEEEcCCcEEEEEEeCCCCCCHHHHHHHHH
Confidence            7 5588999999999999999998863       4679999999999999876  5653 2223334556611      0


Q ss_pred             ch-----hh------------------------h-cccCCcceEECC---CCc--EEEecceeeccccccccCCCCCCcC
Q 020526          172 AY-----EK------------------------T-QKSCEIEQHTLP---DGQ--VIRIGKERYTVGEALFQPSILGLEA  216 (325)
Q Consensus       172 ~~-----~~------------------------~-~~~~~~~~~~lp---d~~--~i~l~~e~~~~~E~lF~p~~~~~~~  216 (325)
                      +|     .+                        . ........+.++   +|.  .+.+..+.+   |.++.|.     .
T Consensus       239 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~~~~i~i~~~~~g~~~~~~ltr~~~---e~l~~~~-----~  310 (554)
T 1yuw_A          239 NHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARF---EELNADL-----F  310 (554)
T ss_dssp             HHHHHHHHHHTSCCTTSCHHHHHHHHHHHHHHHHHHTTSSEEEEEETTCSSSCCEEEEEEHHHH---HHHTHHH-----H
T ss_pred             HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHhhhcccCceEEEEEeeccCCceEEEEEEHHHH---HHHHHHH-----H
Confidence            00     00                        0 000011122222   222  122222221   2223221     0


Q ss_pred             CcHHHHHHHHHHhCChHHHHhccccEEEecCCCCccchHHHHHHhh-ccCCCCcceEEeCCCCCCCCCCCceeeeehhhh
Q 020526          217 HGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAI  295 (325)
Q Consensus       217 ~~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL-~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si  295 (325)
                      ..+.+.|.++++.+.  +...-.+.|+|+||+|.+|++.+++++.+ ..       .+..+.+      |..+.+.||++
T Consensus       311 ~~i~~~i~~~L~~a~--~~~~~i~~VvLvGG~srip~v~~~l~~~f~~~-------~v~~~~n------p~~aVA~Gaa~  375 (554)
T 1yuw_A          311 RGTLDPVEKALRDAK--LDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGK-------ELNKSIN------PDEAVAYGAAV  375 (554)
T ss_dssp             HHTTHHHHHHHHHTT--CCGGGCCEEEEESGGGGCHHHHHHHHHHTTTC-------CCBCCSC------TTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC--CChhhCcEEEEECCcccChHHHHHHHHHcCCC-------ccccCCC------chhHHHHHHHH
Confidence            234556677776653  22334688999999999999999999888 32       2223344      77899999999


Q ss_pred             hhc
Q 020526          296 LAK  298 (325)
Q Consensus       296 ~a~  298 (325)
                      +|.
T Consensus       376 ~a~  378 (554)
T 1yuw_A          376 QAA  378 (554)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            986

>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}

Probab=99.43  E-value=1.5e-12  Score=128.18  Aligned_cols=268  Identities=16%  Similarity=0.183  Sum_probs=159.8

Q ss_pred             eEEEEcCCCcEEEeeeCCCCCCcEe--------cccceeecC-CCcccccCccccc-------------c----Cc----
Q 020526            3 AAVVDAGSKLLKAGPAIPDQAPSMV--------IPSQMKRVL-EDGSSSVDNSTLV-------------E----DV----   52 (325)
Q Consensus         3 ~vViD~Gs~~~k~G~a~gd~~P~~~--------~ps~~~~~~-~~~~~g~~~~~~~-------------~----~~----   52 (325)
                      .|-||+||.++.+++. .+..|..+        .||+++... +...+| +.|...             +    .+    
T Consensus         4 viGIDlGTt~s~va~~-~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG-~~A~~~~~~~p~~t~~~~Kr~iG~~~~d~~   81 (605)
T 2kho_A            4 IIGIDLGTTNSCVAIM-DGTTPRVLENAEGDRTTPSIIAYTQDGETLVG-QPAKRQAVTNPQNTLFAIKRLIGRRFQDEE   81 (605)
T ss_dssp             CEEEECCSSEEEEEEE-ETTEEEECCCTTSCSSEECEEEECTTSCEEES-HHHHTTTTTCGGGEEECGGGTTTCBSSSTT
T ss_pred             EEEEEcCCcCEEEEEE-ECCEEEEEECCCCCcccceEEEEECCCcEEEC-HHHHHHhhhCCCCEeehhhHhhCCCCCcHH
Confidence            5789999999999998 55455544        677765522 334556 433110             0    00    


Q ss_pred             -----eecccc-------------CCeecCH-HHHHHHHHHHHH---hccCCCCCCCceEEEEcCCCCCHHHHHHHHHHh
Q 020526           53 -----TVDPVV-------------RGFIRDW-DAMEDLLHHVLY---AGLGWEEGNEGQILFTDPLCSPKAVREQLVQLM  110 (325)
Q Consensus        53 -----~~~p~~-------------~g~i~d~-~~~~~il~~~~~---~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~l  110 (325)
                           ..+|++             +|..... +....+|+++..   ..++.   .-..++++.|...+..+|+.+.+.+
T Consensus        82 v~~~~~~~p~~~~~~~~g~~~i~~~g~~~~~~ei~a~~L~~l~~~ae~~l~~---~v~~~VitVPa~f~d~qr~a~~~A~  158 (605)
T 2kho_A           82 VQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGE---PVTEAVITVPAYFNDAQRQATKDAG  158 (605)
T ss_dssp             HHHHHHHCSSCEEECTTSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHCS---CCCEEEEEECTTCCHHHHHHHHHHH
T ss_pred             HHHHhhcCCeEEEECCCCceEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCC---CCcEEEEEECCCCCHHHHHHHHHHH
Confidence                 012332             3332222 233344444332   23443   2367899999999999998887764


Q ss_pred             hhhcCCCeEEEechhhhhhhhcCC------ceEEEEEcCCCceEEEEeec------Cee-ccccceeecCcch------h
Q 020526          111 FETFNISGFYSSEQAVLSLYAVGR------ISGCTVDIGHGKIDIAPVIE------GAV-QHIASRRFEVGDE------L  171 (325)
Q Consensus       111 fe~~~~~~v~~~~~~~~a~~~~g~------~tglVVdiG~~~t~v~pv~~------G~~-i~~~~~~~~~ge~------~  171 (325)
                       +..|+..+.++++|.||++++|.      .+.+|+|+|++++.++.+.-      |.. +........+|..      .
T Consensus       159 -~~AGl~v~~li~EP~AAAlay~l~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~g~~~v~a~~gd~~lGG~d~D~~l~  237 (605)
T 2kho_A          159 -RIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLI  237 (605)
T ss_dssp             -HTTTCEEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEECSSCEEEEEEEEECTTTSCEEEEEEEEEESSCSGGGTHHHHH
T ss_pred             -HHcCCceEEEecCHHHHHHHhhhcccCCCCEEEEEECCCCeEEEEEEEEEecCCCCeEEEEEECCCCCccHHHHHHHHH
Confidence             77899999999999999998864      24699999999999998863      432 1112233456621      0


Q ss_pred             -----chhh------------------------h-cccCCcceEECC------CC-c--EEEecceeeccccccccCCCC
Q 020526          172 -----AYEK------------------------T-QKSCEIEQHTLP------DG-Q--VIRIGKERYTVGEALFQPSIL  212 (325)
Q Consensus       172 -----~~~~------------------------~-~~~~~~~~~~lp------d~-~--~i~l~~e~~~~~E~lF~p~~~  212 (325)
                           .|.+                        . ........+.+|      +| .  .+.+..+.|   |.++.|.. 
T Consensus       238 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~aE~~K~~ls~~~~~~i~l~~~~~~~~G~~~~~~~itr~~f---e~l~~~~~-  313 (605)
T 2kho_A          238 NYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKL---ESLVEDLV-  313 (605)
T ss_dssp             HHHHHHHHHHHSCCSTTCHHHHHHHHHHHHHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHH---HTTCCSTT-
T ss_pred             HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEecccccCCCCceEEEEEEeHHHH---HHHHHHHH-
Confidence                 0000                        0 000011112221      12 1  112222222   33444421 


Q ss_pred             CCcCCcHHHHHHHHHHhCChHHHHhccccEEEecCCCCccchHHHHHHhhccCCCCcceEEeCCCCCCCCCCCceeeeeh
Q 020526          213 GLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIG  292 (325)
Q Consensus       213 ~~~~~~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G  292 (325)
                          ..+.+.|.++|.....  ...-...|+|+||+|.+|++.+++++.+..       .+....+      |..+++.|
T Consensus       314 ----~~i~~~i~~~L~~a~~--~~~~i~~VvLvGG~srip~v~~~l~~~fg~-------~~~~~~n------pd~aVA~G  374 (605)
T 2kho_A          314 ----NRSIEPLKVALQDAGL--SVSDIDDVILVGGQTRMPMVQKKVAEFFGK-------EPRKDVN------PDEAVAIG  374 (605)
T ss_dssp             ----GGGTSHHHHHHHTTTC--CTTTCSEEEEESGGGGSHHHHHHHHHHHSS-------CCBCSSC------TTTHHHHH
T ss_pred             ----HHHHHHHHHHHHHcCC--ChhhCceEEEECCcccChHHHHHHHHhcCC-------CcCcCCC------cchHHHHH
Confidence                4577788888887652  233457899999999999999999988821       1223334      67899999


Q ss_pred             hhhhhcc
Q 020526          293 GAILAKV  299 (325)
Q Consensus       293 ~si~a~l  299 (325)
                      |+++|..
T Consensus       375 Aa~~a~~  381 (605)
T 2kho_A          375 AAVQGGV  381 (605)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHH
Confidence            9999874

>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*

Probab=99.42  E-value=1.9e-12  Score=128.74  Aligned_cols=269  Identities=11%  Similarity=0.088  Sum_probs=159.1

Q ss_pred             CceEEEEcCCCcEEEeeeCCCCCCcE--------ecccceeecCCCcccccCcccc-------------cc-------C-
Q 020526            1 MEAAVVDAGSKLLKAGPAIPDQAPSM--------VIPSQMKRVLEDGSSSVDNSTL-------------VE-------D-   51 (325)
Q Consensus         1 m~~vViD~Gs~~~k~G~a~gd~~P~~--------~~ps~~~~~~~~~~~g~~~~~~-------------~~-------~-   51 (325)
                      |..|-||+||.++.+++. ....|..        .+||+++...+...+| +.|..             ++       + 
T Consensus         2 m~~iGIDlGTtns~va~~-~~g~~~ii~n~~g~r~tPS~Vaf~~~~~~vG-~~A~~~~~~~p~~ti~~~KrllG~~~~d~   79 (675)
T 3d2f_A            2 STPFGLDLGNNNSVLAVA-RNRGIDIVVNEVSNRSTPSVVGFGPKNRYLG-ETGKNKQTSNIKNTVANLKRIIGLDYHHP   79 (675)
T ss_dssp             CCCEEEECCSSEEEEEEE-ETTEEEEECCTTSCSSEECCEEECSSSEEET-HHHHHHHTTCGGGEECCHHHHTTCBTTCT
T ss_pred             CcEEEEEcCCCcEEEEEE-ECCeeEEEECCCCCcccceEEEECCCcEEec-HHHHHhhhhChHhHHHHHHHHhCCCCCcH
Confidence            678999999999999997 4433433        3477776544445566 44411             00       0 


Q ss_pred             ----------ceeccccCCeec-------------CHHHHHHHHHHHHH---hccCCCCCCCceEEEEcCCCCCHHHHHH
Q 020526           52 ----------VTVDPVVRGFIR-------------DWDAMEDLLHHVLY---AGLGWEEGNEGQILFTDPLCSPKAVREQ  105 (325)
Q Consensus        52 ----------~~~~p~~~g~i~-------------d~~~~~~il~~~~~---~~l~~~~~~~~~vll~~~~~~~~~~r~~  105 (325)
                                +.+.+..+|.+.             -.+....+|+++..   ..++..   -..++++.|...+..+|+.
T Consensus        80 ~v~~~~~~~p~~v~~~~~g~~~~~~~~~g~~~~~speei~a~~L~~lk~~ae~~lg~~---v~~~VITVPa~f~~~qR~a  156 (675)
T 3d2f_A           80 DFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFIDKVKDTVKQDTKAN---ITDVCIAVPPWYTEEQRYN  156 (675)
T ss_dssp             THHHHHTTCCSEEEECTTSBEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHCSC---CCEEEEEECTTCCHHHHHH
T ss_pred             HHHHHHhhCCeeEEEcCCCceEEEEEeCCCCceEcHHHHHHHHHHHHHHHHHHHhCCC---cceEEEEECCCCCHHHHHH
Confidence                      001122244321             12233344444322   234432   3579999999999999998


Q ss_pred             HHHHhhhhcCCCeEEEechhhhhhhhcCC------------ceEEEEEcCCCceEEEEee--cCee-ccccceeecCcch
Q 020526          106 LVQLMFETFNISGFYSSEQAVLSLYAVGR------------ISGCTVDIGHGKIDIAPVI--EGAV-QHIASRRFEVGDE  170 (325)
Q Consensus       106 l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------------~tglVVdiG~~~t~v~pv~--~G~~-i~~~~~~~~~ge~  170 (325)
                      +.+.+ +..|++.+.++++|.||++++|.            .+.+|+|+|++++.++.+.  +|.. +........+|..
T Consensus       157 ~~~Aa-~~AGl~~~~li~EP~AAAlaygl~~~~~~~~~~~~~~vlV~DlGGGT~Dvsv~~~~~g~~~V~a~~gd~~lGG~  235 (675)
T 3d2f_A          157 IADAA-RIAGLNPVRIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKKGQLKVLGTACDKHFGGR  235 (675)
T ss_dssp             HHHHH-HHTTCEEEEEEEHHHHHHHHHHHHCSCCCCSSSCCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHH
T ss_pred             HHHHH-HHcCCceEEEEcchHHHHHHHhhhccccccccCCCcEEEEEEcCCCcEEEEEEEecCCeEEEEEEcCCCCccHH
Confidence            88754 77899999999999999987642            4579999999999998875  5654 2323334566621


Q ss_pred             ------hc-----hhh------------------------h-cccCCcceEECC---CCc--EEEecceeeccccccccC
Q 020526          171 ------LA-----YEK------------------------T-QKSCEIEQHTLP---DGQ--VIRIGKERYTVGEALFQP  209 (325)
Q Consensus       171 ------~~-----~~~------------------------~-~~~~~~~~~~lp---d~~--~i~l~~e~~~~~E~lF~p  209 (325)
                            .+     |.+                        . ........+.++   ++.  .+.+..+.|   |-++.|
T Consensus       236 d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~rL~~~aE~aK~~Ls~~~~~~i~i~~~~~g~~~~~~itr~~f---e~l~~~  312 (675)
T 3d2f_A          236 DFDLAITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVDVSSQLSREEL---EELVKP  312 (675)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCCGGGCHHHHHHHHHHHHHHHHHHHHCSEEEEEETTSSSSCCEEEEEEHHHH---HHHTHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHhcCcCCceEEEEeeeccCceEEEEEeHHHH---HHHHHH
Confidence                  00     000                        0 000011112222   121  222222222   222222


Q ss_pred             CCCCCcCCcHHHHHHHHHHhCChHHHHhccccEEEecCCCCccchHHHHHHhhccCCCCcceEEeCCCCCCCCCCCceee
Q 020526          210 SILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSA  289 (325)
Q Consensus       210 ~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~  289 (325)
                      .     ...+.+.|.+++......  ..-...|+|+||+|.+|++.+++++.+.       ..+....+      |..++
T Consensus       313 l-----~~~i~~~i~~~L~~a~l~--~~~I~~VvLvGGssriP~v~~~l~~~fg-------~~~~~~~n------PdeaV  372 (675)
T 3d2f_A          313 L-----LERVTEPVTKALAQAKLS--AEEVDFVEIIGGTTRIPTLKQSISEAFG-------KPLSTTLN------QDEAI  372 (675)
T ss_dssp             H-----HTTTTHHHHHHHHHHTCC--GGGCCEEEEESGGGGSHHHHHHHHHHHT-------SCEECCSC------TTTHH
T ss_pred             H-----HHHHHHHHHHHHHHhCCC--hhhCcEEEEECCCccChHHHHHHHHhcC-------CCccccCC------cchHH
Confidence            1     134566677777654321  1234789999999999999999998881       12333444      77899


Q ss_pred             eehhhhhhc
Q 020526          290 WIGGAILAK  298 (325)
Q Consensus       290 W~G~si~a~  298 (325)
                      ..||+++|.
T Consensus       373 A~GAa~~a~  381 (675)
T 3d2f_A          373 AKGAAFICA  381 (675)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999986

>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*

Probab=99.35  E-value=1.4e-12  Score=119.87  Aligned_cols=156  Identities=17%  Similarity=0.171  Sum_probs=112.4

Q ss_pred             CceEEEEcCCCcEEEeeeCCCCCCcEecccceeecCCC------------------------cccccCccccccCceecc
Q 020526            1 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLED------------------------GSSSVDNSTLVEDVTVDP   56 (325)
Q Consensus         1 m~~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~~~------------------------~~~g~~~~~~~~~~~~~p   56 (325)
                      |-.|-||+|+.++|+-..  + .-...+||.++...+.                        +.+| +++       ++|
T Consensus        21 m~~igiDlG~~~tkv~~~--~-g~~~~~PSvva~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~vG-~~A-------~~~   89 (346)
T 2fsj_A           21 MVVVGLDVGYGDTKVIGV--D-GKRIIFPSRWAVTETESWGIGGKIPVLSTDGGQTKFIYGKYASG-NNI-------RVP   89 (346)
T ss_dssp             CEEEEEEECSSEEEEECG--G-GCEEEEESCEEEECCSCC----CCCCBBSSTTSSEEEEGGGCCS-SCC-------BCC
T ss_pred             eEEEEEecCCcceeEEec--C-CCEEEecceeeeccccccCcCcceEEEEecccccccCCcEEEEc-cce-------ecc
Confidence            556899999999998543  3 3456789988653221                        2234 332       379


Q ss_pred             ccCCeecCHHHHHHHHHHHHHhccCCCCCCCceEE--EEcCCCCCHHHHHHHHHHhhhh-------------cCCCeEEE
Q 020526           57 VVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQIL--FTDPLCSPKAVREQLVQLMFET-------------FNISGFYS  121 (325)
Q Consensus        57 ~~~g~i~d~~~~~~il~~~~~~~l~~~~~~~~~vl--l~~~~~~~~~~r~~l~~~lfe~-------------~~~~~v~~  121 (325)
                      +++|.+.| +..+.++.+.+.+...........++  ++.|......+|+.+.+.+...             +++..+.+
T Consensus        90 l~~~~~~~-~~~~~ll~~~l~~~~~~~~~~~~~vvL~i~vP~~~~~~er~a~~~~~~~~~~~v~~~~G~~~~i~v~~v~l  168 (346)
T 2fsj_A           90 QGDGRLAS-KEAFPLIAAALWESGIHNDGSPVDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIM  168 (346)
T ss_dssp             SSTTCTTS-TTTHHHHHHHHHHHCCCC---CEEEEEEEEECGGGHHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEE
T ss_pred             cCCCcccC-hhHHHHHHHHHHHhhhccCCCceEEEEcccCCHHHHHHHHHHHHHHHcCCCcEEEeCCCceEEEEEEEEEE
Confidence            99999999 78888888888764311111345688  8999877778888887775542             23577999


Q ss_pred             echhhhhhhhc--C-----C-ceEEEEEcCCCceEEEEee--cCeeccccceeecCc
Q 020526          122 SEQAVLSLYAV--G-----R-ISGCTVDIGHGKIDIAPVI--EGAVQHIASRRFEVG  168 (325)
Q Consensus       122 ~~~~~~a~~~~--g-----~-~tglVVdiG~~~t~v~pv~--~G~~i~~~~~~~~~g  168 (325)
                      +++|.+|++++  +     . .+-+|||+|+++|.++.+.  +|.++......+++|
T Consensus       169 i~Ep~AAa~~~l~~~~~~~~~~~vlVvDIGgGTtDv~vi~~~~g~~v~~~s~~~~lG  225 (346)
T 2fsj_A          169 RPQGVGAALYLLNQGIIEQQPGYGVVIDVGSRTTDVLTINLMDMEPVVELSFSLQIG  225 (346)
T ss_dssp             EETTHHHHHHHHHHTSSCCCSSEEEEEEECSSCEEEEEEETTTTEECGGGCEEESCC
T ss_pred             EccHHHHHHHhhccccccccCCcEEEEECCCCcEEEEEEEecCCEEEeecCCCcchh
Confidence            99999999974  2     1 3459999999999999998  787666556777888

>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}

Probab=99.32  E-value=3.7e-12  Score=119.64  Aligned_cols=215  Identities=13%  Similarity=0.148  Sum_probs=126.7

Q ss_pred             HHHHHHHHHHH---hccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCCc--------
Q 020526           67 AMEDLLHHVLY---AGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRI--------  135 (325)
Q Consensus        67 ~~~~il~~~~~---~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~--------  135 (325)
                      ....+++++..   ..++.   ....++++.|...+...|+.+.+.+ +..++..+.++.+|.+|+++++..        
T Consensus       130 v~~~~L~~l~~~a~~~~~~---~~~~~vitvPa~~~~~~r~~~~~a~-~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~  205 (409)
T 4gni_A          130 IATRYLRRLVGAASEYLGK---KVTSAVITIPTNFTEKQKAALIAAA-AAADLEVLQLISEPAAAVLAYDARPEATISDK  205 (409)
T ss_dssp             HHHHHHHHHHHHHHHHHTS---CCCEEEEEECTTCCHHHHHHHHHHH-HHTTCEEEEEEEHHHHHHHHTTC------CCE
T ss_pred             HHHHHHHHHHHHHHHHhCC---CCCeEEEEECCCCCHHHHHHHHHHH-HHcCCCeEEEEcCHHHHHHHHhcccccCCCCC
Confidence            44455555433   23332   3467999999999998888876654 778999999999999999998754        


Q ss_pred             eEEEEEcCCCceEEEEee--cCee-ccccceeecCcch-----------hchhh--------------------hc----
Q 020526          136 SGCTVDIGHGKIDIAPVI--EGAV-QHIASRRFEVGDE-----------LAYEK--------------------TQ----  177 (325)
Q Consensus       136 tglVVdiG~~~t~v~pv~--~G~~-i~~~~~~~~~ge~-----------~~~~~--------------------~~----  177 (325)
                      +.+|+|+|+++|.++.+.  +|.. +........+|..           ..|.+                    ..    
T Consensus       206 ~vlv~D~GgGT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K  285 (409)
T 4gni_A          206 IIVVADLGGSRSDVTVLASRSGMYTILATVHDYEYHGIALDKVLIDHFSKEFLKKNPGAKDPRENPRSLAKLRLEAESTK  285 (409)
T ss_dssp             EEEEEEECSSCEEEEEEEEETTEEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHSTTCCCGGGSHHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCceEEEEEEEeCCeEEEEEecCCCCcCHHHHHHHHHHHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHH
Confidence            479999999999998753  3321 1111123566611           00100                    00    


Q ss_pred             ---ccCCcceEECC---CCcE--EEecceeeccccccccCCCCCCcCCcHHHHHHHHHHhCChHHHHhccccEEEecCCC
Q 020526          178 ---KSCEIEQHTLP---DGQV--IRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTT  249 (325)
Q Consensus       178 ---~~~~~~~~~lp---d~~~--i~l~~e~~~~~E~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s  249 (325)
                         .......+.++   ++..  +.++.+.+   |.+++|.     ...+.++|.+.|++...  .....+.|+|+||+|
T Consensus       286 ~~ls~~~~~~i~i~~~~~~~~~~~~itr~~~---~~~~~~~-----~~~i~~~i~~~l~~~~~--~~~~i~~V~LvGG~s  355 (409)
T 4gni_A          286 RALSRSTNASFSVESLIDGLDFASTINRLRY---ETIARTV-----FEGFNRLVESAVKKAGL--DPLDVDEVIMSGGTS  355 (409)
T ss_dssp             HHHHHSSEEEEEEEEEETTEEEEEEEEHHHH---HHHTHHH-----HHHHHHHHHHHHHHTTC--CGGGCCEEEEESGGG
T ss_pred             HhCCCCCceEEEeecccCCcceEEEeeHHHH---HHHHHHH-----HHHHHHHHHHHHHHcCC--CHHHCCEEEEECCcc
Confidence               00001111111   1221  11211111   2233332     14566777777776532  233457899999999


Q ss_pred             CccchHHHHHHhhccCCCCcceEEeCCCCCCCCCCCceeeeehhhhhhccC
Q 020526          250 SMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVV  300 (325)
Q Consensus       250 ~~~G~~~rl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~l~  300 (325)
                      .+|++.++|++.+     ...+++..+........|..+.=.||++++...
T Consensus       356 ~~p~v~~~l~~~f-----~~~~~v~~P~~~~~~~~p~~ava~GAa~~~~~~  401 (409)
T 4gni_A          356 NTPRIAANFRYIF-----PESTRILAPSTDPSALNPSELQARGAALQASLI  401 (409)
T ss_dssp             GCHHHHHHHHHHS-----CTTSEEESTTTCTTCCCTTTHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHc-----CCccccccccccCCCcCHHHHHHHHHHHHhhhh
Confidence            9999999999888     223345322110011127788889999998863

>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}

Probab=99.28  E-value=3.6e-11  Score=111.63  Aligned_cols=143  Identities=13%  Similarity=0.133  Sum_probs=86.5

Q ss_pred             HhhhhcCCCeEEEechhhhhhhhcC------C-ceEEEEEcCCCceEEEEeecCeeccccceeecCcch-----------
Q 020526          109 LMFETFNISGFYSSEQAVLSLYAVG------R-ISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGDE-----------  170 (325)
Q Consensus       109 ~lfe~~~~~~v~~~~~~~~a~~~~g------~-~tglVVdiG~~~t~v~pv~~G~~i~~~~~~~~~ge~-----------  170 (325)
                      -+++..|+.-..++.+|++++.+++      . ...+|||+|+++|.++.+.+|.++..  ..+++|..           
T Consensus       158 ~~~~~aGl~~~~i~~ep~Aaa~~~~~~~~~~~~~~~~vvDiGggttdi~i~~~g~~~~~--~~~~~GG~~i~~~i~~~~~  235 (377)
T 2ych_A          158 EALRGAGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLRGDKPLAV--RVLTLSGKDFTEAIARSFN  235 (377)
T ss_dssp             HHHHHTTCEEEEEEEHHHHTTGGGHHHHHTSTTCEEEEEEECSSCEEEEEEETTEEEEE--EEESCSHHHHHHHHHHHTT
T ss_pred             HHHHHCCCceEEEecchHHHHHHHHhhcccccCCeEEEEEECCCcEEEEEEECCEEEEE--EeeechHHHHHHHHHHHhC
Confidence            3458899999999999999998864      2 34599999999999999999988753  56677722           


Q ss_pred             hchhhhc-----ccC-------CcceEECCCCcEEEecceeeccccccccCCCCCCcCCcHHHHHHHHHHhCChHHHHhc
Q 020526          171 LAYEKTQ-----KSC-------EIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQL  238 (325)
Q Consensus       171 ~~~~~~~-----~~~-------~~~~~~lpd~~~i~l~~e~~~~~E~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l  238 (325)
                      .++...+     ...       ....+.+++ ..+.++.+.  ..|+ .+|.     ...+.+.|.+++..++...+...
T Consensus       236 ~~~~~aE~~K~~~~~~~~~~~~~~~~i~~~~-~~~~i~~~~--~~~~-i~~~-----~~~i~~~i~~~l~~~~~~~~~~~  306 (377)
T 2ych_A          236 LDLLAAEEVKRTYGMATLPTEDEELLLDFDA-ERERYSPGR--IYDA-IRPV-----LVELTQELRRSLEFFRIQLEEAS  306 (377)
T ss_dssp             CCHHHHHHHHHHTC--------------------------C--HHHH-HHHH-----HHHHHHHHHHHHHHHHHHC---C
T ss_pred             CCHHHHHHHHhhccccccccccccccccccc-ccccCCHHH--HHHH-HHHH-----HHHHHHHHHHHHHHHHhccCCCC
Confidence            0111000     000       000111211 111121111  1111 1111     13466677777776655566678


Q ss_pred             cccEEEecCCCCccchHHHHHHhh
Q 020526          239 LENTVLCGGTTSMTGFEDRFQKEA  262 (325)
Q Consensus       239 ~~nIil~GG~s~~~G~~~rl~~eL  262 (325)
                      .++|+|+||+|++||+.+++++.+
T Consensus       307 ~~~IvL~GG~s~~p~l~~~l~~~l  330 (377)
T 2ych_A          307 PEVGYLLGGGSKLRGLASLLTDTL  330 (377)
T ss_dssp             CSEEEEESGGGGSTTHHHHHHHHH
T ss_pred             cCEEEEECccccchhHHHHHHHHh
Confidence            889999999999999999999999

>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D

Probab=99.13  E-value=2.5e-10  Score=112.35  Aligned_cols=68  Identities=16%  Similarity=0.084  Sum_probs=57.1

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCC------ceEEEEEcCCCceEEEEeecC
Q 020526           87 EGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR------ISGCTVDIGHGKIDIAPVIEG  155 (325)
Q Consensus        87 ~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------~tglVVdiG~~~t~v~pv~~G  155 (325)
                      -..++++.|...+..+|+.+.+. .+..|++.+.++++|.||++++|.      .+-+|+|+|++++.++.+.-+
T Consensus       135 v~~~VITVPa~f~~~qr~a~~~A-a~~AGl~v~~li~EP~AAAlaygl~~~~~~~~vlV~DlGGGT~Dvsi~~~~  208 (605)
T 4b9q_A          135 VTEAVITVPAYFNDAQRQATKDA-GRIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGAFDISIIEID  208 (605)
T ss_dssp             CCEEEEEECTTCCHHHHHHHHHH-HHHTTCEEEEEEEHHHHHHHHHHTTSCCSSEEEEEEEECSSCEEEEEEEEE
T ss_pred             CCeEEEEECCCCCHHHHHHHHHH-HHHcCCceEEEeCcHHHHHHHhhhhccCCCCEEEEEECCCCeEEEEEEEEe
Confidence            36789999999999998776655 477899999999999999998853      456899999999999987543

>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*

Probab=98.86  E-value=8.5e-08  Score=90.06  Aligned_cols=182  Identities=15%  Similarity=0.106  Sum_probs=105.4

Q ss_pred             HHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCC-----ceEEEEEcCCCceEEEEeecCeeccccceeecCcch-----
Q 020526          101 AVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGDE-----  170 (325)
Q Consensus       101 ~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVdiG~~~t~v~pv~~G~~i~~~~~~~~~ge~-----  170 (325)
                      ...+.+.++ ++..++.-..++.+|+||+++...     .+.+|||+|+++|.++.+.+|.++..  ..+++|.+     
T Consensus       168 ~~v~n~~~~-~~~AGL~v~~lv~ep~Aaa~a~l~~~~~~~gv~vvDiGggttdisi~~~g~~~~~--~~i~~GG~~it~d  244 (419)
T 4a2a_A          168 KVYEMFYNF-LQDTVKSPFQLKSSLVSTAEGVLTTPEKDRGVVVVNLGYNFTGLIAYKNGVPIKI--SYVPVGMKHVIKD  244 (419)
T ss_dssp             HHHHHHHHH-HHTTSCSCEEEEEHHHHHHHHHCCHHHHHHCEEEEEECSSSEEEEEEETTEEEEE--EEESCCHHHHHHH
T ss_pred             HHHHHHHHH-HHHcCCcEEEEEEHHHHHHHHhhccccccCCEEEEEECCCcEEEEEEECCEEEEE--EecccHHHHHHHH
Confidence            344444444 577899999999999999998764     36799999999999999999998764  46677722     


Q ss_pred             ------hchh------hhccc-----CCcceEECCC--C-cEEEecce-eeccccccccCCCCCCcCCcHHHHHHHHHHh
Q 020526          171 ------LAYE------KTQKS-----CEIEQHTLPD--G-QVIRIGKE-RYTVGEALFQPSILGLEAHGIVEQLVHTIST  229 (325)
Q Consensus       171 ------~~~~------~~~~~-----~~~~~~~lpd--~-~~i~l~~e-~~~~~E~lF~p~~~~~~~~~i~~~I~~~i~~  229 (325)
                            ..++      .....     .....++++.  + ....++.+ ...+.+..+         ..+.+.|.+.|+.
T Consensus       245 Ia~~l~~~~~~AE~iK~~~g~a~~~~~~~~~i~v~~~~~~~~~~is~~~l~~ii~p~v---------eei~~~V~~~L~~  315 (419)
T 4a2a_A          245 VSAVLDTSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHARL---------REIMSKSKKFFRE  315 (419)
T ss_dssp             HHHHHTCCHHHHHHHHHHHCCSCCTTCCCCEEEEECTTSCSEEEEEHHHHHHHHHHHH---------HHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHhccCcccCCCCceEEEeecCCccceEEcHHHHHHHHHHHH---------HHHHHHHHHHHHH
Confidence                  0010      00000     0111222221  1 11111111 111112222         3566677777766


Q ss_pred             CCh---HH-HHhccccEEEecCCCCccchHHHHHHhhccCCCCcceEEeC----CCCCCCC-----CCCceeeeehhhhh
Q 020526          230 VSS---EN-HRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVK----PPEYMPE-----NLTLYSAWIGGAIL  296 (325)
Q Consensus       230 ~~~---d~-r~~l~~nIil~GG~s~~~G~~~rl~~eL~~~~~~~~v~v~~----~~~~~~~-----~~~~~~~W~G~si~  296 (325)
                      ...   +. ...+...|+||||+|++||+.+.+++.+     ..++++..    .|..+..     ..|.|++-+|-.++
T Consensus       316 ~~~~~p~~~~~~~~~~IvLtGG~s~lpgl~e~~~~~~-----g~~vri~~~~~~~p~~~~~~~~~~~~P~~~t~~Gl~~~  390 (419)
T 4a2a_A          316 VEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATEVF-----KSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFA  390 (419)
T ss_dssp             HTTCC--------TTCEEEESGGGGSTTHHHHHHHHH-----TSCEEECCGGGSSSCCCBTCHHHHTCGGGHHHHHTTCC
T ss_pred             cCCCcccccccccCCEEEEECchhchhhHHHHHHHHH-----CCCeEEEecCCCCchhccCcccccCCchHHHHHHHHHH
Confidence            532   22 3456778999999999999999999999     33555544    1221211     23677777777777


Q ss_pred             hcc
Q 020526          297 AKV  299 (325)
Q Consensus       297 a~l  299 (325)
                      +..
T Consensus       391 ~~~  393 (419)
T 4a2a_A          391 VSE  393 (419)
T ss_dssp             ---
T ss_pred             Hhh
Confidence            654

>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus}

Probab=98.76  E-value=2.1e-08  Score=92.22  Aligned_cols=82  Identities=16%  Similarity=0.101  Sum_probs=62.8

Q ss_pred             CceEEEEcCCCCCHHHH-HHHHHHhhhh-----------cCCCeEEEechhhhhhhhcC-----------CceEEEEEcC
Q 020526           87 EGQILFTDPLCSPKAVR-EQLVQLMFET-----------FNISGFYSSEQAVLSLYAVG-----------RISGCTVDIG  143 (325)
Q Consensus        87 ~~~vll~~~~~~~~~~r-~~l~~~lfe~-----------~~~~~v~~~~~~~~a~~~~g-----------~~tglVVdiG  143 (325)
                      +..+++..|.-.....| +++.+.+...           +.+..|.+++++++|+++.+           ..+-+|||+|
T Consensus       113 ~~~lvvGLP~~~~~~~k~~~l~~~l~~~~~v~~~g~~~~i~I~~V~v~pE~~~a~~~~~~~~~~~~~~~~~~~~~vvDiG  192 (355)
T 3js6_A          113 NVVIATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIAKTINVKGVKIVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFG  192 (355)
T ss_dssp             EEEEEEEECGGGTTSHHHHHHHHHHSSCEEEEETTEEEEEEEEEEEEEEHHHHHHHHTTEETTEECHHHHTCEEEEEEEC
T ss_pred             eEEEEEeCCHHHHhHHHHHHHHHHhCCCeEEEECCEEEEEEEEEEEEEeCcHHHHHHHHHccCccccccccCcEEEEEeC
Confidence            34577777766555555 4677766532           23478999999999999874           3466899999


Q ss_pred             CCceEEEEeecCeeccccceeecCc
Q 020526          144 HGKIDIAPVIEGAVQHIASRRFEVG  168 (325)
Q Consensus       144 ~~~t~v~pv~~G~~i~~~~~~~~~g  168 (325)
                      +++|.++.+.+|.++......++.|
T Consensus       193 ggTtd~~v~~~~~~~~~~s~s~~~G  217 (355)
T 3js6_A          193 SGTTIIDTYQNMKRVEEESFVINKG  217 (355)
T ss_dssp             SSCEEEEEEETTEECGGGCEEESCC
T ss_pred             CCcEEEEEEcCCEEccccccCcchH
Confidence            9999999998899988777788888

>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}

Probab=98.65  E-value=3.1e-07  Score=83.48  Aligned_cols=157  Identities=12%  Similarity=0.067  Sum_probs=95.4

Q ss_pred             eEEEEcCCCcEEEeee-CC---CCCCcEecccceeecCC-----------------CcccccCccccccCceeccccCCe
Q 020526            3 AAVVDAGSKLLKAGPA-IP---DQAPSMVIPSQMKRVLE-----------------DGSSSVDNSTLVEDVTVDPVVRGF   61 (325)
Q Consensus         3 ~vViD~Gs~~~k~G~a-~g---d~~P~~~~ps~~~~~~~-----------------~~~~g~~~~~~~~~~~~~p~~~g~   61 (325)
                      .|-||+|-+++|+-.. .+   +..-+..|||.++...+                 .+++| +.+..      +......
T Consensus         9 iigiD~G~~~~K~~~~~~~g~~~~~~~~~FpS~v~~~~~~~~~~~~~~~~v~~~G~~Y~vG-~~a~~------~~~~~~k   81 (329)
T 4apw_A            9 VMTLDAGKYETKLIGKNKKGTTEDIKRVIFKTKIYNLEDGYIDIEGNSHKIELDGKEYLIG-EQGVE------DSSETSK   81 (329)
T ss_dssp             EEEEEECSSEEEEEEHHHHHHCCSSTTEEEESCCEECCEESCCCCCSCEEEECSSSEEEES-CCSSS------CSGGGCC
T ss_pred             EEEEecCCceEEEEeccCCCcccceeEEeecccccccccccccCCCCceEEEECCEEEEeC-ccccc------ccccCCc
Confidence            3689999999998643 02   12245778998754211                 12334 32210      1111112


Q ss_pred             ecCHHHHHHHHHHHHHhccCCCCCCCceEEEEcCCCCC--HHHHHHHHHHhhhh-------------cCCCeEEEechhh
Q 020526           62 IRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSP--KAVREQLVQLMFET-------------FNISGFYSSEQAV  126 (325)
Q Consensus        62 i~d~~~~~~il~~~~~~~l~~~~~~~~~vll~~~~~~~--~~~r~~l~~~lfe~-------------~~~~~v~~~~~~~  126 (325)
                        +-+....++..++.+.+......+..+++..|.-.-  .+.|+++.+.+-..             +.+..+.+.|+++
T Consensus        82 --~~~~~~~L~l~Aia~~~~~~~~~~v~lv~gLP~~~~~~~~~k~~~~~~l~~~~~v~~~~~g~~~~i~I~~v~v~pe~~  159 (329)
T 4apw_A           82 --TNLIHKLAAYTAITQVLDSNKNNKVQLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDITIKAEGS  159 (329)
T ss_dssp             --CTTHHHHHHHHHHHTTCCSSSEEEEEEEEEECGGGTTSSTTTTHHHHHHSSCEEECSSTTCCCEEEEEEEEEEEEHHH
T ss_pred             --CchhHHHHHHHHHHHHhccccCceEEEEEcCCHHHhcchhHHHHHHHHhcCCceEEEEECCEEEEEEEeEEEEEeccH
Confidence              223455566666644443321123455666664432  22455666655521             2356799999999


Q ss_pred             hhhhhcC----CceEEEEEcCCCceEEEEeecCeeccccceeecCc
Q 020526          127 LSLYAVG----RISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVG  168 (325)
Q Consensus       127 ~a~~~~g----~~tglVVdiG~~~t~v~pv~~G~~i~~~~~~~~~g  168 (325)
                      .|++...    ..+-+|||+|+++|.++.+.+|.++......+++|
T Consensus       160 ga~~~~~~~~~~~~v~vvDiGggTtd~~v~~~g~~~~~~~~~~~~G  205 (329)
T 4apw_A          160 GVLFLEQENFKNKNVAVIDFGGLNMGFSLYRNCVVNPSERFIEEHG  205 (329)
T ss_dssp             HHHHHSCCCCTTCEEEEEEECSSCEEEEEEETTEECGGGCEEESCC
T ss_pred             HHHhhcchhhccCCEEEEEeCCCcEEEEEEECCEEeeccccchhhH
Confidence            9998762    35679999999999999999999987766777888

>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A

Probab=98.58  E-value=2.5e-08  Score=90.37  Aligned_cols=57  Identities=21%  Similarity=0.209  Sum_probs=44.9

Q ss_pred             hhcCCCeEEEechhhhhhhhcC-----CceEEEEEcCCCceEEEEeecCee-ccccceeecCc
Q 020526          112 ETFNISGFYSSEQAVLSLYAVG-----RISGCTVDIGHGKIDIAPVIEGAV-QHIASRRFEVG  168 (325)
Q Consensus       112 e~~~~~~v~~~~~~~~a~~~~g-----~~tglVVdiG~~~t~v~pv~~G~~-i~~~~~~~~~g  168 (325)
                      +.+++..+.++++|++|+++.+     ..+.+|||+|+++|.++.+.+|.+ +.......++|
T Consensus       136 ~~~~i~~v~~~~e~~aa~~~~~~~~~~~~~~~vvDiGggttd~~v~~~g~~~v~~~~~~~~lG  198 (320)
T 2zgy_A          136 DTFTIKDVKVMPESIPAGYEVLQELDELDSLLIIDLGGTTLDISQVMGKLSGISKIYGDSSLG  198 (320)
T ss_dssp             CCCEEEEEEEEESSHHHHHHHHHHSCTTCEEEEEEECSSCEEEEEEEGGGCCEEEEEEECSCC
T ss_pred             cEEEEEEEEEecCcHHHHHhhhccccCCCCEEEEEcCCCeEEEEEEeCCeeEEeeecCCcccc
Confidence            3455678999999999998763     357799999999999999998876 44344566777

>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A

Probab=97.44  E-value=0.0039  Score=54.58  Aligned_cols=66  Identities=20%  Similarity=0.358  Sum_probs=46.0

Q ss_pred             cHHHHHHHHHHhCChHHHHhccccEEEecCCCCccchHHHHHHhhccCCCCcceEEeCCCCCCCCCCCceeeeehhhhhh
Q 020526          218 GIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILA  297 (325)
Q Consensus       218 ~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a  297 (325)
                      ++.+.|.+.+...  -.+....++|+++||.+.+|++.++|++.+       ..+++.+++      |.+..=+||+++|
T Consensus       188 ~~~~~v~~~l~~~--~~~~~~~~~vvl~GGva~n~~lr~~l~~~~-------g~~~~~p~~------p~~~~A~GAAl~A  252 (276)
T 4ehu_A          188 GIHTSVAKRVSSL--VKRIGVQRNVVMVGGVARNSGIVRAMAREI-------NTEIIVPDI------PQLTGALGAALYA  252 (276)
T ss_dssp             HHHHHHHHHHHHH--HHHHCCCSSEEEESGGGGCHHHHHHHHHHH-------TSCEECCSS------GGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH--HHhcccCCeEEEecCccchHHHHHHHHHHH-------CCCeeeCCC------cchHHHHHHHHHH
Confidence            3444444444331  234455678999999999999999999888       334555555      6677668999998


Q ss_pred             c
Q 020526          298 K  298 (325)
Q Consensus       298 ~  298 (325)
                      .
T Consensus       253 ~  253 (276)
T 4ehu_A          253 F  253 (276)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5

Probab=95.69  E-value=0.017  Score=50.43  Aligned_cols=48  Identities=19%  Similarity=0.363  Sum_probs=36.9

Q ss_pred             cccEEEecCCCCccchHHHHHHhhccCCCCcceEEeCCCCCCCCCCCceeeeehhhhhhcc
Q 020526          239 LENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKV  299 (325)
Q Consensus       239 ~~nIil~GG~s~~~G~~~rl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~l  299 (325)
                      -+.|+++||.++.+++.+.+.+.|       ...|..++.      +.+..=+|++++|..
T Consensus       209 ~~~i~~~GG~a~n~~~~~~~~~~l-------g~~v~~p~~------~~~~~AlGAAl~A~~  256 (270)
T 1hux_A          209 VKDVVMTGGVAQNYGVRGALEEGL-------GVEIKTSPL------AQYNGALGAALYAYK  256 (270)
T ss_dssp             CSSEEEESGGGGCHHHHHHHHHHH-------CSCEECCGG------GGGHHHHHHHHHHHH
T ss_pred             CCeEEEeCccccCHHHHHHHHHHH-------CCCeEeCCC------cchHhHHHHHHHHHH
Confidence            467999999999999999999998       123444443      566677899999864

>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A*

Probab=95.56  E-value=0.034  Score=49.70  Aligned_cols=77  Identities=14%  Similarity=0.130  Sum_probs=48.4

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhh-------cC-CceEEEEEcCCCceEEEEeecCeecc
Q 020526           88 GQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYA-------VG-RISGCTVDIGHGKIDIAPVIEGAVQH  159 (325)
Q Consensus        88 ~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~-------~g-~~tglVVdiG~~~t~v~pv~~G~~i~  159 (325)
                      ..++-|.-.. .-.+++..++.+-+..+++ +-+++..-=|.++       .+ ..+++|||+|+++|.++-.-+|.+..
T Consensus        85 i~~vATsA~R-~A~N~~~fl~~v~~~~G~~-i~vIsg~eEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~~~~  162 (315)
T 1t6c_A           85 VKAVATEAIR-RAKNAEEFLERVKREVGLV-VEVITPEQEGRYAYLAVAYSLKPEGEVCVVDQGGGSTEYVFGKGYKVRE  162 (315)
T ss_dssp             EEEEECHHHH-TSTTHHHHHHHHHHHTCCC-EEECCHHHHHHHHHHHHHHHTCCCSEEEEEEEETTEEEEEEEETTEEEE
T ss_pred             EEEEEcHHHH-cCcCHHHHHHHHHHHHCCC-EEEcCHHHHHHHHHHHHHhhcccCCCEEEEEeCCCcEEEEEEeCCceee
Confidence            3444443322 2345667777777778875 5566554322222       24 66899999999999999988877643


Q ss_pred             ccceeecCc
Q 020526          160 IASRRFEVG  168 (325)
Q Consensus       160 ~~~~~~~~g  168 (325)
                        ...+++|
T Consensus       163 --~~Sl~~G  169 (315)
T 1t6c_A          163 --VISLPIG  169 (315)
T ss_dssp             --EEEECCC
T ss_pred             --EEEEecc
Confidence              3445555

>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str}

Probab=94.67  E-value=0.23  Score=47.33  Aligned_cols=65  Identities=11%  Similarity=0.179  Sum_probs=44.4

Q ss_pred             HHHHHHHHHhhhhcCCCeEEEechhh---hhhh----hcCCceEEEEEcCCCceEEEEeecCeeccccceeecCc
Q 020526          101 AVREQLVQLMFETFNISGFYSSEQAV---LSLY----AVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVG  168 (325)
Q Consensus       101 ~~r~~l~~~lfe~~~~~~v~~~~~~~---~a~~----~~g~~tglVVdiG~~~t~v~pv~~G~~i~~~~~~~~~g  168 (325)
                      .++...++-+-+..|++ +-+++..-   +...    +....+++|||||+++|.++-+-+|.+..  ...+++|
T Consensus       100 ~N~~~fl~~i~~~tG~~-ievIsG~EEA~l~~~gv~~~~~~~~~lvvDIGGGStEl~~~~~~~~~~--~~Sl~lG  171 (508)
T 3hi0_A          100 ENGPDFIREAEAILGCE-IEVLSGEKEALYSAYGVISGFYQPDGIAGDLGGGSLELIDIKDKSCGE--GITLPLG  171 (508)
T ss_dssp             TTHHHHHHHHHHHHTSC-EEECCHHHHHHHHHHHHHHHSSSCEEEEEEECSSCEEEEEEETTEECC--CEEESCC
T ss_pred             cCHHHHHHHHHHHHCCC-eEEecHHHHHHHHHHHHHhcCCCCCeEEEEeCCCceEEEEeeCCeeee--EEEecce
Confidence            34556666677777865 55655432   2222    22345789999999999999999887754  4677777

>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A

Probab=94.54  E-value=0.31  Score=41.88  Aligned_cols=15  Identities=20%  Similarity=0.153  Sum_probs=14.3

Q ss_pred             EEEEcCCCcEEEeee
Q 020526            4 AVVDAGSKLLKAGPA   18 (325)
Q Consensus         4 vViD~Gs~~~k~G~a   18 (325)
                      ++||+|..++|+|+-
T Consensus         6 L~IDIGNT~ik~gl~   20 (249)
T 3bex_A            6 LLVDVGNTHSVFSIT   20 (249)
T ss_dssp             EEEEECSSEEEEEEE
T ss_pred             EEEEECCCeEEEEEE
Confidence            789999999999998

>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A

Probab=94.33  E-value=0.14  Score=48.74  Aligned_cols=44  Identities=14%  Similarity=0.154  Sum_probs=33.4

Q ss_pred             chhhhhhhhc----CC-ceEEEEEcCCCceEEEEeecCeeccccceeecCc
Q 020526          123 EQAVLSLYAV----GR-ISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVG  168 (325)
Q Consensus       123 ~~~~~a~~~~----g~-~tglVVdiG~~~t~v~pv~~G~~i~~~~~~~~~g  168 (325)
                      -++++|.++.    ++ .-.++||+|+++|++.-+.+|..+..  ..+++|
T Consensus       390 ~ep~AAglaaLTeDE~eLGvaiIDmGGGTTd~sVf~~G~lv~a--~~ip~g  438 (610)
T 2d0o_A          390 AEAEAAILGALTTPGTTRPLAILDLGAGSTDASIINPKGDIIA--THLAGA  438 (610)
T ss_dssp             EHHHHHHHHHTTSTTCCSSEEEEEECSSEEEEEEECTTCCEEE--EEEECS
T ss_pred             ccHHHhhhhhcCCCCCcCCeEEEEeCCCcceEEEEcCCcEEEE--EEeccc
Confidence            6677777766    33 35589999999999999999987765  445566

>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}

Probab=93.90  E-value=0.11  Score=46.35  Aligned_cols=65  Identities=20%  Similarity=0.269  Sum_probs=41.4

Q ss_pred             HHHHHHHHHhhhhcCCCeEEEechhhhh---hh----hcC--CceEEEEEcCCCceEEEEeecCeeccccceeecCc
Q 020526          101 AVREQLVQLMFETFNISGFYSSEQAVLS---LY----AVG--RISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVG  168 (325)
Q Consensus       101 ~~r~~l~~~lfe~~~~~~v~~~~~~~~a---~~----~~g--~~tglVVdiG~~~t~v~pv~~G~~i~~~~~~~~~g  168 (325)
                      .+++..++-+-+..+++ +-+++..-=|   .+    +..  ..+++|+|+|+++|.++-+-+|.+...  ..+++|
T Consensus        89 ~N~~~fl~~i~~~tG~~-i~vIsG~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~~~~--~Sl~lG  162 (315)
T 3mdq_A           89 SNKQVLIDRIKKEVNID-VEVIDGAREAELIFRGVQQAVPMEDHISLAMDIGGGSVEFIIGNKNEILWK--QSFEIG  162 (315)
T ss_dssp             TTHHHHHHHHHHHHCCC-EEECCHHHHHHHHHHHHHHHSCCTTCCEEEEEECSSCEEEEEECSSCEEEE--EEESCC
T ss_pred             cCHHHHHHHHHHHHCCC-eEEeCHHHHHHHHHHHHHhcCCCCCCCEEEEEeCCCceEEEEEECCeEeee--EEEech
Confidence            34456666677777865 5555543222   22    122  367999999999999999988766542  344444

>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A*

Probab=93.74  E-value=0.27  Score=47.00  Aligned_cols=147  Identities=14%  Similarity=0.011  Sum_probs=76.3

Q ss_pred             ceEEEEcCCCcEEEeeeCCCCCCcEecccceeecCCCcccccCccccccCceeccccCCeecCHHHHHHHHHHH--HHhc
Q 020526            2 EAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTVDPVVRGFIRDWDAMEDLLHHV--LYAG   79 (325)
Q Consensus         2 ~~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~~~~~~g~~~~~~~~~~~~~p~~~g~i~d~~~~~~il~~~--~~~~   79 (325)
                      ..-+||+||.++|.-.+. -. +.. +. .+.+.+...-+| +.          -...|.+ +.+.+++.++-+  |...
T Consensus        12 ~~AaIDiGSNSirL~I~~-~~-~~~-~~-~l~~~k~~vrLg-~g----------~~~~g~L-s~eai~r~~~~L~~f~~~   75 (513)
T 1u6z_A           12 EFAAVDLGSNSFHMVIAR-VV-DGA-MQ-IIGRLKQRVHLA-DG----------LGPDNML-SEEAMTRGLNCLSLFAER   75 (513)
T ss_dssp             CEEEEEECSSCEEEEEEE-EE-TTE-EE-EEEEEEECCCTG-GG----------BCTTCCB-CHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEeccccEEEEEEE-Ec-CCe-eE-EEEeeEEEEecc-Cc----------ccccCCc-CHHHHHHHHHHHHHHHHH
Confidence            346999999999987772 21 211 11 111111112222 11          1123443 345666666532  1222


Q ss_pred             cCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhh---h----cC-CceEEEEEcCCCceEEEE
Q 020526           80 LGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLY---A----VG-RISGCTVDIGHGKIDIAP  151 (325)
Q Consensus        80 l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~---~----~g-~~tglVVdiG~~~t~v~p  151 (325)
                      +....-.+..++-|.-.. .-.+++...+-+-+..|++ +-+++..-=|-+   +    .. ...++|||||+++|.++-
T Consensus        76 ~~~~~v~~v~~vATsA~R-~A~N~~~fl~~i~~~tG~~-i~vIsG~eEA~l~~~gv~~~~~~~~~~lviDIGGGStEl~~  153 (513)
T 1u6z_A           76 LQGFSPASVCIVGTHTLR-QALNATDFLKRAEKVIPYP-IEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVI  153 (513)
T ss_dssp             TTTCCGGGEEEEECHHHH-HCTTHHHHHHHHTTTCSSC-EEECCHHHHHHHHHHHHHHHSCCCSCEEEEEECSSCEEEEE
T ss_pred             HHhCCCCEEEEEecHHHH-cCcCHHHHHHHHHHHHCCC-EEEeCHHHHHHHHHHHHHhhccCCCCEEEEEECCCcEEEEE
Confidence            211110223333332211 1234556777777778865 556655422222   1    12 237999999999999998


Q ss_pred             eecCeeccccceeecCc
Q 020526          152 VIEGAVQHIASRRFEVG  168 (325)
Q Consensus       152 v~~G~~i~~~~~~~~~g  168 (325)
                      .-+|.+..  ...+++|
T Consensus       154 ~~~~~~~~--~~Sl~lG  168 (513)
T 1u6z_A          154 GENFEPIL--VESRRMG  168 (513)
T ss_dssp             EETTEEEE--EEEESCC
T ss_pred             EeCCeeeE--EEEEecc
Confidence            87777653  4567777

>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6

Probab=93.15  E-value=0.15  Score=48.61  Aligned_cols=44  Identities=18%  Similarity=0.177  Sum_probs=33.1

Q ss_pred             chhhhhhhhc----CC-ceEEEEEcCCCceEEEEeecCeeccccceeecCc
Q 020526          123 EQAVLSLYAV----GR-ISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVG  168 (325)
Q Consensus       123 ~~~~~a~~~~----g~-~tglVVdiG~~~t~v~pv~~G~~i~~~~~~~~~g  168 (325)
                      -++++|.++.    ++ .-.++||+|+++|++.-+.+|..+..  ..+++|
T Consensus       392 ~ep~AA~laaLTedE~elGvaiIDmGgGTTd~sVf~~g~lv~a--~~ip~g  440 (607)
T 1nbw_A          392 VEANMAIAGALTTPGCAAPLAILDLGAGSTDAAIVNAEGQITA--VHLAGA  440 (607)
T ss_dssp             CHHHHHHHHHTTSTTCCSSEEEEEECSSEEEEEEECSSSCEEE--EEEECC
T ss_pred             ccHHHhhhhhcCCCCCcCCeEEEEeCCCcceEEEEcCCcEEEE--EEeccc
Confidence            5677777765    33 35589999999999999999987765  445566

>3aap_A Ectonucleoside triphosphate diphosphohydrolase I; adenosine triphosphatase, ntpdase; 1.60A {Legionella pneumophila} PDB: 3aaq_A* 3aar_A*

Probab=92.19  E-value=1.1  Score=40.55  Aligned_cols=99  Identities=11%  Similarity=0.054  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCceEEEEcCCC---CCHHHHHHHHHHhhhhc-------CCCeEEEechhhh-------
Q 020526           65 WDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLC---SPKAVREQLVQLMFETF-------NISGFYSSEQAVL-------  127 (325)
Q Consensus        65 ~~~~~~il~~~~~~~l~~~~~~~~~vll~~~~~---~~~~~r~~l~~~lfe~~-------~~~~v~~~~~~~~-------  127 (325)
                      .+.+++.++ -|.. . ... ...++.+....-   .+...++.+++.+-+.+       + -.+.+++..-=       
T Consensus        52 ~~~~~~~l~-~f~~-~-~~~-~~~~v~~~ATaa~R~a~n~~~~~~l~~v~~~~~~~~~~~g-~~v~VIsG~eEa~~~~~g  126 (353)
T 3aap_A           52 SVTIDAYLT-MLLA-D-API-HNIPVYFYATAGMRLLPQSQQKKYYDELEYWFRQQSQWQL-VEAKTITGNDEALFDWLA  126 (353)
T ss_dssp             HHHHHHHHH-HHHT-T-CSC-CSEEEEEEECHHHHTSCHHHHHHHHHHHHHHHHTCSSEEE-EEEEECCHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HHHH-H-Hhc-CCCcEEEEecHHHhcCcHHHHHHHHHHHHHHHhhCCCCCC-CeEEECChHHHHHHHHHH
Confidence            566777776 3333 2 112 334555544322   23444667777666655       3 24556654322       


Q ss_pred             hhhhcC------CceEEEEEcCCCceEEEEeec--CeeccccceeecCc
Q 020526          128 SLYAVG------RISGCTVDIGHGKIDIAPVIE--GAVQHIASRRFEVG  168 (325)
Q Consensus       128 a~~~~g------~~tglVVdiG~~~t~v~pv~~--G~~i~~~~~~~~~g  168 (325)
                      +.+..+      ..+.+|+|+|+++|.++-..+  +.+.......+++|
T Consensus       127 v~~~l~~~~~~~~~t~~v~DiGGGStei~~~~~~~~~~~~~~~~sl~lG  175 (353)
T 3aap_A          127 VNYKLDTLKSVQNKSVGVMDMGGASVQIVFPMPKNAEISKHNQVELNIY  175 (353)
T ss_dssp             HHHHTTCSSSCCSSCEEEEEECSSEEEEEEECCCCTTSCGGGEEEEEET
T ss_pred             HHHHhhhccccccccEEEEEeCCCceEEEEecCCccccCCCceEEEEEC
Confidence            223333      246999999999999987644  33333334667777

>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705}

Probab=91.57  E-value=0.35  Score=43.62  Aligned_cols=53  Identities=15%  Similarity=0.122  Sum_probs=35.0

Q ss_pred             HHHHHHHHHhhhhcCCCeEEEechh---hhhhhhc----C----CceEEEEEcCCCceEEEEeec
Q 020526          101 AVREQLVQLMFETFNISGFYSSEQA---VLSLYAV----G----RISGCTVDIGHGKIDIAPVIE  154 (325)
Q Consensus       101 ~~r~~l~~~lfe~~~~~~v~~~~~~---~~a~~~~----g----~~tglVVdiG~~~t~v~pv~~  154 (325)
                      .+++..++-+-+.++++ +-+++..   .++..+.    .    ..+++|||+|+++|.++-+.+
T Consensus       102 ~N~~~fl~~v~~~tGi~-ieVIsG~eEA~l~~~gv~~~~~~~~~~~~~lviDIGGGStel~~~~~  165 (343)
T 3cer_A          102 ENREEFEDEIERILGVR-PEVIPGTEEADLSFLGATSVVNRDDLPAPYLVVDLGGGSTELVIGGD  165 (343)
T ss_dssp             TTHHHHHHHHHHHHSSC-CEECCHHHHHHHHHHHHHSSCCTTTCCSSEEEEEECSSCEEEEECCC
T ss_pred             cCHHHHHHHHHHHHCCC-EEEeCHHHHHHHHHHHHHhhCccccccCCEEEEEeCCCceEEEEeec
Confidence            34556677777777765 5555543   3322221    2    256999999999999988766

>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A

Probab=90.85  E-value=0.17  Score=45.22  Aligned_cols=26  Identities=35%  Similarity=0.502  Sum_probs=24.2

Q ss_pred             ceEEEEEcCCCceEEEEeecCeeccc
Q 020526          135 ISGCTVDIGHGKIDIAPVIEGAVQHI  160 (325)
Q Consensus       135 ~tglVVdiG~~~t~v~pv~~G~~i~~  160 (325)
                      .++++||||..+|.|+||.+|.|+..
T Consensus       127 ~~~llvDIGsTTTDIipi~~G~pl~g  152 (334)
T 3cet_A          127 ENCILVDMGSTTTDIIPIVEGKVVAE  152 (334)
T ss_dssp             SSEEEEEECSSCEEEEEEETTEECCC
T ss_pred             CCEEEEEcCcchhhhhhhcCCeeccc
Confidence            68999999999999999999999773

>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp}

Probab=89.25  E-value=4  Score=35.18  Aligned_cols=16  Identities=19%  Similarity=0.320  Sum_probs=15.1

Q ss_pred             eEEEEcCCCcEEEeee
Q 020526            3 AAVVDAGSKLLKAGPA   18 (325)
Q Consensus         3 ~vViD~Gs~~~k~G~a   18 (325)
                      -++||+|..++|+|+-
T Consensus         4 lL~IDIGNT~iK~gl~   19 (266)
T 3djc_A            4 ILCIDVGNSHIYGGVF   19 (266)
T ss_dssp             EEEEEECSSEEEEEEE
T ss_pred             EEEEEECCCeEEEEEE
Confidence            6899999999999998

>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str}

Probab=86.84  E-value=5.1  Score=34.58  Aligned_cols=15  Identities=27%  Similarity=0.239  Sum_probs=14.2

Q ss_pred             EEEEcCCCcEEEeee
Q 020526            4 AVVDAGSKLLKAGPA   18 (325)
Q Consensus         4 vViD~Gs~~~k~G~a   18 (325)
                      ++||+|..++|+|+-
T Consensus         3 L~IDIGNT~ik~gl~   17 (268)
T 2h3g_X            3 FVLDVGNTNAVLGVF   17 (268)
T ss_dssp             EEEEECSSEEEEEEE
T ss_pred             EEEEECcCcEEEEEE
Confidence            789999999999988

>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10

Probab=85.75  E-value=7.1  Score=33.67  Aligned_cols=53  Identities=17%  Similarity=0.181  Sum_probs=42.2

Q ss_pred             HHHHHhhhhcCCCeEEEechhhhhhhhc-----CCceEEEEEcCCCceEEEEeecCeeccc
Q 020526          105 QLVQLMFETFNISGFYSSEQAVLSLYAV-----GRISGCTVDIGHGKIDIAPVIEGAVQHI  160 (325)
Q Consensus       105 ~l~~~lfe~~~~~~v~~~~~~~~a~~~~-----g~~tglVVdiG~~~t~v~pv~~G~~i~~  160 (325)
                      .+.+.+ +.+++| |++.+++-+++++-     +..+.++|-+|.+ +-..-|.+|.++..
T Consensus        86 ~l~~~l-~~~~~p-v~v~NDa~aaa~~e~~~~~~~~~~v~l~~GtG-iG~giv~~G~l~~G  143 (292)
T 2gup_A           86 SWYEAL-SSYQLP-VHLENDANCVGLSELLAHPELENAACVVIGTG-IGGAMIINGRLHRG  143 (292)
T ss_dssp             BHHHHT-GGGCCC-EEEEEHHHHHHHHHHHHCTTCSSEEEEEESSS-EEEEEEETTEEECC
T ss_pred             CHHHHH-HHcCCC-EEEechHHHHHHHHHHhcCCCCeEEEEEECCc-eEEEEEECCEEEec
Confidence            456777 888988 88999999988873     5679999999986 55666789988764

>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5

Probab=84.20  E-value=15  Score=31.57  Aligned_cols=71  Identities=13%  Similarity=0.065  Sum_probs=49.3

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHHhhhhcCC-CeEEEechhhhhhhh-cCCceEEEEEcCCCceEEEEeecCeecc
Q 020526           88 GQILFTDPLCSPKAVREQLVQLMFETFNI-SGFYSSEQAVLSLYA-VGRISGCTVDIGHGKIDIAPVIEGAVQH  159 (325)
Q Consensus        88 ~~vll~~~~~~~~~~r~~l~~~lfe~~~~-~~v~~~~~~~~a~~~-~g~~tglVVdiG~~~t~v~pv~~G~~i~  159 (325)
                      ..+-+..|-.. +.....+.+.+-+.+++ ..+.+.+++.+|+++ .+..++++|=+|.+.--..-+.||+...
T Consensus        61 ~~igig~pG~~-~~~~~~l~~~l~~~~~~~~pv~v~NDa~~aa~ge~g~~~~v~v~~GTGigg~~i~~~G~~~~  133 (291)
T 1zbs_A           61 RAVYFYGAGCT-PAKAPMLNEALDSMLPHCDRIEVAGDMLGAARALCGDSEGIACILGTGSNSCLFDGREIKAN  133 (291)
T ss_dssp             CEEEEEETTCC-TTTHHHHHHHHHHHSTTCSEEEEECHHHHHHHHHTTTSCEEEEEESSSEEEEEECSSSEEEE
T ss_pred             cEEEEECCCCC-hHHHHHHHHHHHHhcCCCCcEEEeCcHHHHHHhhcCCCCcEEEEecCChheEEECCCCcEEE
Confidence            34666667654 22223455555566775 369999999999997 5788999999998875555556898753

>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14

Probab=83.85  E-value=0.66  Score=40.70  Aligned_cols=70  Identities=14%  Similarity=0.080  Sum_probs=45.8

Q ss_pred             cHHHHHHHHHHhCCh-HHHHhccccEEEecC-CCCccchHHHHHHhhccCCCCcceEEeCCCCCCCCCCCceeeeehhhh
Q 020526          218 GIVEQLVHTISTVSS-ENHRQLLENTVLCGG-TTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAI  295 (325)
Q Consensus       218 ~i~~~I~~~i~~~~~-d~r~~l~~nIil~GG-~s~~~G~~~rl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si  295 (325)
                      +|.++|.+.|..+-. -.|+.=.++|+++|| .+..|++.++|.+.+.+.    ..+++-+++      ++|..=+||++
T Consensus       215 sl~~sV~~~I~~la~~~a~~~~i~~Vvf~Gg~l~~n~~l~~~l~~~~~~~----~~~~~~p~~------~~~~gAlGAaL  284 (287)
T 2ews_A          215 AVIGVVGEVVTTMAITVAREFKTENIVYIGSSFHNNALLRKVVEDYTVLR----GCKPYYVEN------GAFSGAIGALY  284 (287)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCEEEEESGGGTTCHHHHHHHHHHHHHT----TCEEEECTT------GGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCchhcCHHHHHHHHHHHhhC----CceEEECCC------ccHHHHHHHHH
Confidence            455555555543321 122333457999999 999999999999876332    335544555      67888888887


Q ss_pred             hh
Q 020526          296 LA  297 (325)
Q Consensus       296 ~a  297 (325)
                      ++
T Consensus       285 ~~  286 (287)
T 2ews_A          285 LE  286 (287)
T ss_dssp             TC
T ss_pred             hC
Confidence            75

>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*

Probab=82.30  E-value=9.8  Score=33.41  Aligned_cols=52  Identities=10%  Similarity=0.142  Sum_probs=39.6

Q ss_pred             HHHhhhhcCCCeEEEechhhhhhhh-------cCCceEEEEEcCCCceEEEEeecCeeccc
Q 020526          107 VQLMFETFNISGFYSSEQAVLSLYA-------VGRISGCTVDIGHGKIDIAPVIEGAVQHI  160 (325)
Q Consensus       107 ~~~lfe~~~~~~v~~~~~~~~a~~~-------~g~~tglVVdiG~~~t~v~pv~~G~~i~~  160 (325)
                      .+.+-+.+++| |++.+++-+++++       .+..+.++|-+|.+ .-..-|.+|.++..
T Consensus        89 ~~~l~~~~~~p-v~v~NDa~aaal~E~~~g~~~~~~~~~~l~~GtG-iG~gii~~G~l~~G  147 (321)
T 3vgl_A           89 KDKVEQRVGLP-VVVENDANAAAWGEYRFGAGQGHDDVICITLGTG-LGGGIIIGNKLRRG  147 (321)
T ss_dssp             HHHHHHHHCSC-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEEETTEECCC
T ss_pred             HHHHhhhhCCC-EEEEehhhhHHHHHHHhCCCCCCCCEEEEEeCcc-eEEEEEECCEEecC
Confidence            33444567888 8899999888876       24578999999987 66777789998764

>3cj1_A Ectonucleoside triphosphate diphosphohydrolase 2; alpha/beta protein, actin-like fold, alternative splicing, calcium, glycoprotein, magnesium; 1.70A {Rattus norvegicus} PDB: 3cj7_A* 3cj9_A* 3cja_A*

Probab=81.79  E-value=1.7  Score=40.63  Aligned_cols=55  Identities=11%  Similarity=0.111  Sum_probs=34.9

Q ss_pred             HHHHHHHHhhhhcC---C--CeEEEechhhh-------hhhhcC---------------CceEEEEEcCCCceEEEEeec
Q 020526          102 VREQLVQLMFETFN---I--SGFYSSEQAVL-------SLYAVG---------------RISGCTVDIGHGKIDIAPVIE  154 (325)
Q Consensus       102 ~r~~l~~~lfe~~~---~--~~v~~~~~~~~-------a~~~~g---------------~~tglVVdiG~~~t~v~pv~~  154 (325)
                      .++.+++.+-+.++   +  ..+.+++..-=       +.+..|               ..+..|+|+|+++|.++-..+
T Consensus       130 n~~~~L~~v~~~l~~~~f~~~~v~VIsG~eEa~y~wl~vn~~lg~~~~~~~~~~~~~~~~~t~gvlDlGGgStqi~~~~~  209 (456)
T 3cj1_A          130 ATARVLEAVTQTLTQYPFDFRGARILSGQDEGVFGWVTANYLLENFIKYGWVGRWIRPRKGTLGAMDLGGASTQITFETT  209 (456)
T ss_dssp             HHHHHHHHHHHHHTTSSSEEEEEEECCHHHHHHHHHHHHHHHTTTTSCCEETTEECSSCCCCCEEEEECSSEEEEEEECC
T ss_pred             HHHHHHHHHHHHHhhCCCCcCceEEcCchHHhhhhHHHHHhhhcccccccccccccccCCCceEEEEcCCCceEEEeccC
Confidence            45666666656553   2  35666665422       223334               346789999999999998766


Q ss_pred             Ce
Q 020526          155 GA  156 (325)
Q Consensus       155 G~  156 (325)
                      ..
T Consensus       210 ~~  211 (456)
T 3cj1_A          210 SP  211 (456)
T ss_dssp             SC
T ss_pred             Cc
Confidence            54

>3zx3_A Ectonucleoside triphosphate diphosphohydrolase 1; domain rotation, purinergic signaling; 1.70A {Rattus norvegicus} PDB: 3zx2_A* 3zx0_A*

Probab=81.68  E-value=2.6  Score=39.35  Aligned_cols=90  Identities=10%  Similarity=0.101  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHhccCCCCCCCceEEEEcCCCC---C---HHHHHHHHHHhhhhcC-----CCeEEEechh-------hh
Q 020526           66 DAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCS---P---KAVREQLVQLMFETFN-----ISGFYSSEQA-------VL  127 (325)
Q Consensus        66 ~~~~~il~~~~~~~l~~~~~~~~~vll~~~~~~---~---~~~r~~l~~~lfe~~~-----~~~v~~~~~~-------~~  127 (325)
                      +.+..+++.+....-.... +..|+.+....-+   +   ...++.+.+.+-+.++     +..+.+++..       ++
T Consensus        89 ~~l~~Ll~~a~~~vp~~~~-~~tpi~~~ATAgmR~l~~~~~~~~~~il~~v~~~l~~~~f~~~~v~iisG~eEg~y~wi~  167 (452)
T 3zx3_A           89 AYLAECMKMSTERIPASKQ-HQTPVYLGATAGMRLLRMESKQSADEVLAAVSRSLKSYPFDFQGAKIITGQEEGAYGWIT  167 (452)
T ss_dssp             HHHHHHHHHHHHHSCHHHH-TTCEEEEEECHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSEEEEEEECCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHc-CCccEEEEeeHHHhhccccCHHHHHHHHHHHHHHHhhCCCCCCceEECCchhhhhhhHHH
Confidence            3566677665432111112 4567766655322   1   1234555555544442     2467777654       22


Q ss_pred             hhhhcCC------ceEEEEEcCCCceEEEEeecCe
Q 020526          128 SLYAVGR------ISGCTVDIGHGKIDIAPVIEGA  156 (325)
Q Consensus       128 a~~~~g~------~tglVVdiG~~~t~v~pv~~G~  156 (325)
                      +.|..|.      .+..++|+|+++|+|+=..++.
T Consensus       168 vnyllg~l~~~~~~t~g~lDlGGgStQi~f~~~~~  202 (452)
T 3zx3_A          168 INYLLGRFKTPGGSTFGALDLGGASTQITFVPLNS  202 (452)
T ss_dssp             HHHHTTTTC---CCCCEEEEECSSEEEEEECCSSC
T ss_pred             HHhhhccccCCCCCceEEEecCCCceEEEeccCCC
Confidence            3334452      5677899999999998776654

>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A*

Probab=81.39  E-value=1.5  Score=39.58  Aligned_cols=72  Identities=7%  Similarity=0.083  Sum_probs=47.8

Q ss_pred             cHHHHHHHHHHhCCh-HHHHhccccEEEecC-CCCccchHHHHHHhh-ccCCCCcceEEeCCCCCCCCCCCceeeeehhh
Q 020526          218 GIVEQLVHTISTVSS-ENHRQLLENTVLCGG-TTSMTGFEDRFQKEA-GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGA  294 (325)
Q Consensus       218 ~i~~~I~~~i~~~~~-d~r~~l~~nIil~GG-~s~~~G~~~rl~~eL-~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~s  294 (325)
                      +|..+|.+.|.+... .-++.=.++|+++|| .+..|++.+.|++.| -.-....++.+..+        +++..=+||.
T Consensus       284 gll~sVa~~I~~lA~l~A~~~~i~~IvftGgfla~n~~~~~~L~~~l~~ws~g~~~~~~~~~--------~~y~GAlGAa  355 (360)
T 2i7n_A          284 ATLVTITNNIGSIARMCALNENIDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEH--------EGYFGAVGAL  355 (360)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCCEEEESGGGCSSSHHHHHHHHHHHHHTTTSCCEEEETT--------TTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCeEEEeCcccccCHHHHHHHHHHHhhhhcCCeeEEEcCC--------ccHHHHHHHH
Confidence            555566555554421 124444568999999 999999999999998 33333445555444        4577778887


Q ss_pred             hhh
Q 020526          295 ILA  297 (325)
Q Consensus       295 i~a  297 (325)
                      +++
T Consensus       356 L~~  358 (360)
T 2i7n_A          356 LEL  358 (360)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	325
d2fxua2	225	c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxI	9e-46
d1k8ka2	258	c.55.1.1 (A:161-418) Actin-related protein 3, Arp3	2e-36
d2fxua1	140	c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId:	4e-27
d1k8ka1	158	c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {	6e-27
d1k8kb1	190	c.55.1.1 (B:154-343) Actin-related protein 2, Arp2	2e-25

>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 225

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  152 bits (386), Expect = 9e-46
 Identities = 75/231 (32%), Positives = 104/231 (45%), Gaps = 49/231 (21%)

Query: 134 RISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVG------------------------D 169
           R +G  +D G G     P+ EG     A  R ++                          
Sbjct: 1   RTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAER 60

Query: 170 ELAYEKTQKSCEI------------------EQHTLPDGQVIRIGKERYTVGEALFQPSI 211
           E+  +  +K C +                  + + LPDGQVI IG ER+   E LFQPS 
Sbjct: 61  EIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSF 120

Query: 212 LGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCSSAIR 270
           +G+E+ GI E   ++I     +  + L  N V+ GGTT   G  DR QKE   L  S ++
Sbjct: 121 IGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMK 180

Query: 271 PTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVH 321
             ++ PPE        YS WIGG+ILA +   Q   ITK +YDE+GPS+VH
Sbjct: 181 IKIIAPPERK------YSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVH 225

>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 258

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 3, Arp3
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  129 bits (326), Expect = 2e-36
 Identities = 54/254 (21%), Positives = 79/254 (31%), Gaps = 63/254 (24%)

Query: 134 RISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVG------------------------- 168
            ++G  +D G G   + PV EG V     +   +                          
Sbjct: 2   TLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSL 61

Query: 169 ------------------DELAYEKTQKSCEIEQHTL-----PDGQVIRIGKERYTVGEA 205
                              E     T  S  I+Q+T           I +G ER+   E 
Sbjct: 62  ETAKAVKERYSYVCPDLVKEFNKYDTDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEI 121

Query: 206 LFQPSILGLE-AHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKE--- 261
            F P     +    I E +   I     +  R L +N VL GG+T    F  R Q++   
Sbjct: 122 FFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKR 181

Query: 262 ---------AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADY 312
                      L    ++P  +            Y+ W GG++LA          TK DY
Sbjct: 182 TVDARLKLSEELSGGRLKPKPIDVQVITHHM-QRYAVWFGGSMLASTPEFYQVCHTKKDY 240

Query: 313 DESGPSVV-HRKCF 325
           +E GPS+  H   F
Sbjct: 241 EEIGPSICRHNPVF 254

>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 140

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  101 bits (253), Expect = 4e-27
 Identities = 56/142 (39%), Positives = 68/142 (47%), Gaps = 13/142 (9%)

Query: 3   AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG--SSSVDNSTLVED--------- 51
           A V D GS L+KAG A  D AP  V PS + R    G         + V D         
Sbjct: 1   ALVCDNGSGLVKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 59

Query: 52  VTVDPVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMF 111
               P+  G I +WD ME + HH  Y  L         +L   PL  PKA RE++ Q+MF
Sbjct: 60  TLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLN-PKANREKMTQIMF 118

Query: 112 ETFNISGFYSSEQAVLSLYAVG 133
           ETFN+   Y + QAVLSLYA G
Sbjct: 119 ETFNVPAMYVAIQAVLSLYASG 140

>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 158

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 3, Arp3
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  101 bits (253), Expect = 6e-27
 Identities = 43/155 (27%), Positives = 63/155 (40%), Gaps = 20/155 (12%)

Query: 1   MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKR-----VLEDGSSSVDNSTLVEDVTVD 55
           + A VVD G+   K G A  +  P  +IPS +       V +     V       D  + 
Sbjct: 3   LPACVVDCGTGYTKLGYA-GNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIG 61

Query: 56  -------------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAV 102
                        P+  G + DWD ME  +  V++  L  E  +   +L   PL      
Sbjct: 62  DEAIEKPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLN-TPEN 120

Query: 103 REQLVQLMFETFNISGFYSSEQAVLSLYAVGRISG 137
           RE   ++MFE+FN+ G Y + QAVL+L A      
Sbjct: 121 REYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQ 155

>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Length = 190

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 2, Arp2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 98.3 bits (244), Expect = 2e-25
 Identities = 45/167 (26%), Positives = 68/167 (40%), Gaps = 42/167 (25%)

Query: 137 GCTVDIGHGKIDIAPVIEGAVQHIASRRFEVG---------------------------- 168
           G  VD G G   I PV EG      +RR ++                             
Sbjct: 1   GVVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRDITRYLIKLLLLRGYAFNHSADFETV 60

Query: 169 ---------DELAYEKTQKSCE-----IEQHTLPDGQVIRIGKERYTVGEALFQPSILGL 214
                         E+ QK        +E +TLPDG++I++G ER+   EALFQP ++ +
Sbjct: 61  RMIKEKLCYVGYNIEQEQKLALETTVLVESYTLPDGRIIKVGGERFEAPEALFQPHLINV 120

Query: 215 EAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKE 261
           E  G+ E L +TI     +   +  ++ VL GG+T   G   R ++E
Sbjct: 121 EGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLERE 167

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	325
d2fxua2	225	Actin {Cow (Bos taurus) [TaxId: 9913]}	100.0
d1k8ka2	258	Actin-related protein 3, Arp3 {Cow (Bos taurus) [T	100.0
d1k8ka1	158	Actin-related protein 3, Arp3 {Cow (Bos taurus) [T	99.98
d1k8kb1	190	Actin-related protein 2, Arp2 {Cow (Bos taurus) [T	99.97
d2fxua1	140	Actin {Cow (Bos taurus) [TaxId: 9913]}	99.97
d1jcea2	196	Prokaryotic actin homolog MreB {Thermotoga maritim	98.7
d1e4ft2	191	Cell division protein FtsA {Thermotoga maritima [T	98.51
d1jcea1	137	Prokaryotic actin homolog MreB {Thermotoga maritim	98.46
d1dkgd2	198	Heat shock protein 70kDa, ATPase fragment {Escheri	97.56
d1bupa1	185	Heat shock protein 70kDa, ATPase fragment {Cow (Bo	97.46
d1dkgd1	183	Heat shock protein 70kDa, ATPase fragment {Escheri	97.06
d1bupa2	193	Heat shock protein 70kDa, ATPase fragment {Cow (Bo	97.01
d2zgya2	163	Plasmid segregation protein ParM {Escherichia coli	96.96
d2fsja1	161	Hypothetical protein Ta0583 {Archaeon Thermoplasma	96.34
d2fsja2	164	Hypothetical protein Ta0583 {Archaeon Thermoplasma	90.13
d1huxa_	259	Hydroxyglutaryl-CoA dehydratase component A {Acida	88.58
d2zgya1	157	Plasmid segregation protein ParM {Escherichia coli	86.77
d1q18a1	110	Glucokinase Glk {Escherichia coli [TaxId: 562]}	85.63
d2ap1a1	186	Putative regulator protein YcfX {Salmonella typhim	83.94
d2aa4a2	170	N-acetylmannosamine kinase NanK {Escherichia coli	83.69

>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.8e-47  Score=328.94  Aligned_cols=182  Identities=42%  Similarity=0.696  Sum_probs=166.3

Q ss_pred             CceEEEEEcCCCceEEEEeecCeeccccceeecCcch--------------------------------hch-----hhh
Q 020526          134 RISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGDE--------------------------------LAY-----EKT  176 (325)
Q Consensus       134 ~~tglVVdiG~~~t~v~pv~~G~~i~~~~~~~~~ge~--------------------------------~~~-----~~~  176 (325)
                      ++||||||+|++.|+|+||+||+++.++++++++|.+                                .++     ..+
T Consensus         1 rtTglVVDiG~~~t~v~PV~eG~~l~~~~~~~~~GG~~lt~~l~~~L~~~~~~~~~~~~~~~~~~~ke~~~~~~~d~~~e   80 (225)
T d2fxua2           1 RTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENE   80 (225)
T ss_dssp             CSSEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHCCCCSSHHHH
T ss_pred             CCEEEEEEcCCCcEEEEEEECCEEchhceEEEECcHHHHHHHHHHHHhhccCCcCCHHHHHHHHHHHHHHhhcccchhHH
Confidence            5899999999999999999999999999999999921                                011     000


Q ss_pred             -----cccCCcceEECCCCcEEEecceeeccccccccCCCCCCcCCcHHHHHHHHHHhCChHHHHhccccEEEecCCCCc
Q 020526          177 -----QKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSM  251 (325)
Q Consensus       177 -----~~~~~~~~~~lpd~~~i~l~~e~~~~~E~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~~  251 (325)
                           ........|.+|||+.+.++.||+.++|.||+|...+.+..+|+++|.++|.+||+|+|+.|++||+|+||+|++
T Consensus        81 ~~~~~~~~~~~~~~~lpdg~~i~i~~er~~~~E~lF~p~~~~~~~~gl~~~i~~sI~~~~~d~r~~l~~nIvl~GG~s~~  160 (225)
T d2fxua2          81 MATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMY  160 (225)
T ss_dssp             HHHHHHCSTTCEEEECTTSCEEEESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHHTCEEEESGGGCS
T ss_pred             HhhcccCcccceeEECCCCCEEEEchHhccccHhhcCccccCCccCChhHHHHHHhhcCCcchhhhhhcCEEEeCCcccC
Confidence                 112234789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHhh-ccCCCCcceEEeCCCCCCCCCCCceeeeehhhhhhccCCCCCeeeeHHHHhhcCcchhh
Q 020526          252 TGFEDRFQKEA-GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVH  321 (325)
Q Consensus       252 ~G~~~rl~~eL-~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~l~~~~~~~itk~ey~e~G~~~~~  321 (325)
                      |||.+||++|| ++.+...++++..+++      |++++|+|||++|++++|+++||||+||+|+|+++||
T Consensus       161 ~G~~~RL~~El~~~~~~~~~~~v~~~~~------~~~~aW~Ggsilasl~~f~~~~itk~eY~E~G~~ivh  225 (225)
T d2fxua2         161 PGIADRMQKEITALAPSTMKIKIIAPPE------RKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVH  225 (225)
T ss_dssp             TTHHHHHHHHHHHHSCTTCCCCEECCTT------TTSHHHHHHHHHHHCGGGGGGSEEHHHHHHHCGGGGC
T ss_pred             CchhHHHHhHHHHhhccccceEEecCCC------CCeeEEeCHhhhhcCccHhhEEEEHHHHHhhCccccC
Confidence            99999999999 9999988999999988      8999999999999999999999999999999999986

>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 3, Arp3
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.2e-44  Score=317.70  Aligned_cols=185  Identities=29%  Similarity=0.447  Sum_probs=158.0

Q ss_pred             ceEEEEEcCCCceEEEEeecCeeccccceeecCcch--------------------------------hch-----hhh-
Q 020526          135 ISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGDE--------------------------------LAY-----EKT-  176 (325)
Q Consensus       135 ~tglVVdiG~~~t~v~pv~~G~~i~~~~~~~~~ge~--------------------------------~~~-----~~~-  176 (325)
                      -||||||+|++.|+|+||+||+++.++++++++|.+                                .+|     ..+ 
T Consensus         3 ~TGlVVDiG~~~T~v~PV~eG~~l~~~~~~~~~GG~~lt~~L~~~L~~~~~~~~~~~~~~~~~~~ke~~~~v~~d~~~e~   82 (258)
T d1k8ka2           3 LTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEF   82 (258)
T ss_dssp             CCEEEEEESSSCEEEEEEETTEECGGGCEEESCSHHHHHHHHHHHHHTTCCCCCGGGHHHHHHHHHHHHCCCCSCHHHHH
T ss_pred             CEEEEEEcCCCcEEEEEEECCEEchhheEEEeCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhHHhhhcccccchHHHH
Confidence            589999999999999999999999999999999911                                111     000 


Q ss_pred             -----cccCCcceEECC-----CCcEEEecceeeccccccccCCCCCCc-CCcHHHHHHHHHHhCChHHHHhccccEEEe
Q 020526          177 -----QKSCEIEQHTLP-----DGQVIRIGKERYTVGEALFQPSILGLE-AHGIVEQLVHTISTVSSENHRQLLENTVLC  245 (325)
Q Consensus       177 -----~~~~~~~~~~lp-----d~~~i~l~~e~~~~~E~lF~p~~~~~~-~~~i~~~I~~~i~~~~~d~r~~l~~nIil~  245 (325)
                           ......+.|.++     ++..+.++.||+.+||.||+|...+.+ ..+|+++|.++|++||+|+|+.|++||+|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~er~~~~E~lF~p~~~~~~~~~~l~~~i~~si~~~~~d~r~~L~~nIvl~  162 (258)
T d1k8ka2          83 NKYDTDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLS  162 (258)
T ss_dssp             HHHHHSGGGTCEEEEEECTTTCCEEEEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHHSCGGGTTHHHHCEEEE
T ss_pred             HhhcccccccccccccccccCCCCeEEecCccceeccHHHhhhhhhcccccccchHHHHHHHHhccHHhhHHHHhCEEEe
Confidence                 011112445554     466889999999999999999988765 579999999999999999999999999999


Q ss_pred             cCCCCccchHHHHHHhh-ccC----------------CCCcceEEeCCCCCCCCCCCceeeeehhhhhhccCCCCCeeee
Q 020526          246 GGTTSMTGFEDRFQKEA-GLC----------------SSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHIT  308 (325)
Q Consensus       246 GG~s~~~G~~~rl~~eL-~~~----------------~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~l~~~~~~~it  308 (325)
                      ||+|++|||.+||++|| +++                |..++++++.+++      |++++|+|||++|++++|+++|||
T Consensus       163 GG~s~~~Gf~eRL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~------r~~s~W~Ggsila~l~~f~~~~It  236 (258)
T d1k8ka2         163 GGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHM------QRYAVWFGGSMLASTPEFYQVCHT  236 (258)
T ss_dssp             SGGGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCTT------CTTHHHHHHHHHTTSHHHHHHSEE
T ss_pred             cCcccCCCHHHHHHHHHHhhcchhhhhhhhccccccCCCCceeeEecCCC------CCceehHHHHHHHcCccHHhheec
Confidence            99999999999999999 653                3445778888887      899999999999999999999999


Q ss_pred             HHHHhhcCcchh-hcccC
Q 020526          309 KADYDESGPSVV-HRKCF  325 (325)
Q Consensus       309 k~ey~e~G~~~~-~~k~~  325 (325)
                      |+||+|+|++|| +||||
T Consensus       237 k~eY~E~G~~iv~~rk~f  254 (258)
T d1k8ka2         237 KKDYEEIGPSICRHNPVF  254 (258)
T ss_dssp             HHHHHHHCGGGGGCCCCC
T ss_pred             HHHHhhhChHHHhcCCCc
Confidence            999999999999 57787

>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 3, Arp3
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.98  E-value=8.4e-33  Score=224.92  Aligned_cols=134  Identities=31%  Similarity=0.453  Sum_probs=121.1

Q ss_pred             CceEEEEcCCCcEEEeeeCCCCCCcEecccceeecC------------------CCcccccCccccccCce-eccccCCe
Q 020526            1 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVL------------------EDGSSSVDNSTLVEDVT-VDPVVRGF   61 (325)
Q Consensus         1 m~~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~------------------~~~~~g~~~~~~~~~~~-~~p~~~g~   61 (325)
                      +++||||+||+++|+||| ||+.|+.++||+++...                  .+.++| |++....++. .+|+++|.
T Consensus         3 ~PavViD~GS~~~KaG~a-ge~~P~~i~Ps~vg~~~~~~~~~~~~~~~~~~~~~~~~~ig-~e~~~~~~~~~~~pi~~G~   80 (158)
T d1k8ka1           3 LPACVVDCGTGYTKLGYA-GNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIG-DEAIEKPTYATKWPIRHGI   80 (158)
T ss_dssp             SCCEEEEECSSEEEEEET-TCSSCSEEEESCEEECC-----------CCCTTGGGCEEEG-GGGTSCTTSEEECCEETTE
T ss_pred             CCcEEEECCCCeEEEEEC-CCCCCCEEeccceeecccccccCchhcccccCCCccceecC-hhhhhCCCccccccccCCe
Confidence            478999999999999999 99999999999997531                  124577 7776555666 49999999


Q ss_pred             ecCHHHHHHHHHHHHHhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCCceE
Q 020526           62 IRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISG  137 (325)
Q Consensus        62 i~d~~~~~~il~~~~~~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tg  137 (325)
                      |.|||.++.+|+|+|.+.|.+++ +++|++++||+++++..|++++|++||+|++|+++++++++||+||+|++++
T Consensus        81 i~dwd~~e~l~~~~~~~~l~v~~-~~~pvlltEp~~~~~~~Re~~~EilFE~~~vpa~~~~~~~~Lslya~g~~~~  155 (158)
T d1k8ka1          81 VEDWDLMERFMEQVIFKYLRAEP-EDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQ  155 (158)
T ss_dssp             ESCHHHHHHHHHHHHHTTTCCCG-GGCCEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGSTT
T ss_pred             EecHHHHHHHHHHHHHHhcccCC-CCCceeeeecCCCCHHHHHHHHHHHhhhcCCCEEEEEchhhhhheeCCCCCC
Confidence            99999999999999999999999 9999999999999999999999999999999999999999999999998765

>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 2, Arp2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=2.9e-31  Score=222.59  Aligned_cols=131  Identities=35%  Similarity=0.648  Sum_probs=116.7

Q ss_pred             EEEEEcCCCceEEEEeecCeeccccceeecCcch--------------------------------hch-----hhh---
Q 020526          137 GCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGDE--------------------------------LAY-----EKT---  176 (325)
Q Consensus       137 glVVdiG~~~t~v~pv~~G~~i~~~~~~~~~ge~--------------------------------~~~-----~~~---  176 (325)
                      |+|||+||+.|+|+||+||+++.+++.++++|.+                                .+|     .++   
T Consensus         1 GlVVDiG~~~T~v~PV~dG~~l~~a~~~~~igG~~lt~~l~~~l~~~~~~~~~~~~~~~~~~i~~~~~~v~~~~~~e~~~   80 (190)
T d1k8kb1           1 GVVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQKL   80 (190)
T ss_dssp             CCEEEECSSCEEEECEETTEECSTTCEEESCCHHHHHHHHHHHHHHTTCCCCTTTTHHHHHHHHHHHCCCCSSHHHHHHH
T ss_pred             CEEEEcCCCcEEEEEeECCEEcccceEEEeccHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHhhhhhhcccHHHHHHh
Confidence            7899999999999999999999999999999921                                111     111   


Q ss_pred             --cccCCcceEECCCCcEEEecceeeccccccccCCCCCCcCCcHHHHHHHHHHhCChHHHHhccccEEEecCCCCccch
Q 020526          177 --QKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGF  254 (325)
Q Consensus       177 --~~~~~~~~~~lpd~~~i~l~~e~~~~~E~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~~~G~  254 (325)
                        ........|++|||+.+.++.||+.+||.||+|+..+.+..+|+++|.++|.+||+|+|+.|++||+|+||+|++|||
T Consensus        81 ~~~~~~~~~~~~lpdg~~i~i~~er~~~~E~lF~p~~~~~~~~~l~~~i~~si~~c~~d~r~~L~~NIvl~GG~Sl~pGf  160 (190)
T d1k8kb1          81 ALETTVLVESYTLPDGRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGL  160 (190)
T ss_dssp             HHHCSTTCEEEECTTSCEEEECTHHHHTGGGGTCGGGGTCCSCCHHHHHHHHHHHSCTTTHHHHHTTCEEESGGGCSTTH
T ss_pred             hhcccceeeeeecCCCcEEEEChhhccccccccChhhcCcccccHHHHHHHHHHhCCHhHHHHHHcCEEEECcccCCCCH
Confidence              112234789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhh-ccCCC
Q 020526          255 EDRFQKEA-GLCSS  267 (325)
Q Consensus       255 ~~rl~~eL-~~~~~  267 (325)
                      .+||++|| ++.|.
T Consensus       161 ~~RL~~EL~~l~p~  174 (190)
T d1k8kb1         161 PSRLERELKQLYLE  174 (190)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhH
Confidence            99999999 88764

>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=1.8e-30  Score=207.08  Aligned_cols=128  Identities=44%  Similarity=0.649  Sum_probs=114.6

Q ss_pred             eEEEEcCCCcEEEeeeCCCCCCcEecccceeecC----------CCcccccCcccccc-Cce-eccccCCeecCHHHHHH
Q 020526            3 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVL----------EDGSSSVDNSTLVE-DVT-VDPVVRGFIRDWDAMED   70 (325)
Q Consensus         3 ~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~----------~~~~~g~~~~~~~~-~~~-~~p~~~g~i~d~~~~~~   70 (325)
                      +||||+||++||+||| ||+.|+.++||.+++..          .+.++| |++...+ .+. .+|+++|.+.|||.++.
T Consensus         1 avViD~Gs~~~k~G~a-ge~~P~~~~ps~~g~~~~~~~~~~~~~~~~~ig-d~~~~~~~~~~~~~p~~~g~v~dwd~~e~   78 (140)
T d2fxua1           1 ALVCDNGSGLVKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG-DEAQSKRGILTLKYPIEHGIITNWDDMEK   78 (140)
T ss_dssp             CEEEEECSSEEEEEET-TCSSCSEEEECCEEEECTTTC-------CCEEH-HHHHHHTTSEEEECSEETTEECCHHHHHH
T ss_pred             CEEEECCCCeEEEeeC-CCCCcceEeccceeeecccccccCccccceeeC-hhHhhccccccccCcCcCCcccCHHHHHH
Confidence            5999999999999999 99999999999987632          224566 6654433 334 49999999999999999


Q ss_pred             HHHHHHHhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcC
Q 020526           71 LLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVG  133 (325)
Q Consensus        71 il~~~~~~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g  133 (325)
                      +|+|+|.+.|.+++ +++|+++|||+++++..|++++|++||+|++|++++.++++||+|++|
T Consensus        79 ~~~~~~~~~l~~~~-~~~pvlltE~~~~~~~~r~~~~EilFE~~~vp~~~~~~~~~ls~ys~G  140 (140)
T d2fxua1          79 IWHHTFYNELRVAP-EEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASG  140 (140)
T ss_dssp             HHHHHHHTTSCCCG-GGSCEEEEECTTCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHTT
T ss_pred             HHHHhhhhhcccCC-CCCcceeeccCCCCHHHHHHHHHHhhccCCCCEEEEEhhHHhHhhcCC
Confidence            99999999999999 999999999999999999999999999999999999999999999987

>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Prokaryotic actin homolog MreB
species: Thermotoga maritima [TaxId: 2336]

Probab=98.70  E-value=1e-08  Score=83.68  Aligned_cols=69  Identities=22%  Similarity=0.329  Sum_probs=54.2

Q ss_pred             CcHHHHHHHHHHhCChHHHHhcc-ccEEEecCCCCccchHHHHHHhhccCCCCcceEEeCCCCCCCCCCCceeeeehhhh
Q 020526          217 HGIVEQLVHTISTVSSENHRQLL-ENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAI  295 (325)
Q Consensus       217 ~~i~~~I~~~i~~~~~d~r~~l~-~nIil~GG~s~~~G~~~rl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si  295 (325)
                      ..+.+.|.+++..+......... +.|+||||+|++|++.+++++.+     ..++.+...        |.+++..||++
T Consensus       115 ~~~~~~i~~~l~~~~~~~~~~~~~~~IvLvGGsS~ip~v~~~l~~~f-----g~~v~~~~~--------P~~aVA~GAai  181 (196)
T d1jcea2         115 VAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKET-----GISVIRSEE--------PLTAVAKGAGM  181 (196)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHHCEEEESGGGCSBTHHHHHHHHH-----SSCEEECSS--------TTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccccccccccceEEeCchhcchhHHHHHHHHH-----CcCCccCCC--------hHHHHHHHHHH
Confidence            45778888899888877665544 46999999999999999999888     234444433        56899999999


Q ss_pred             hhc
Q 020526          296 LAK  298 (325)
Q Consensus       296 ~a~  298 (325)
                      +++
T Consensus       182 ~~~  184 (196)
T d1jcea2         182 VLD  184 (196)
T ss_dssp             GGG
T ss_pred             HHH
Confidence            875

>d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Cell division protein FtsA
species: Thermotoga maritima [TaxId: 2336]

Probab=98.51  E-value=6.5e-08  Score=79.01  Aligned_cols=31  Identities=19%  Similarity=0.235  Sum_probs=26.4

Q ss_pred             eEEEEEcCCCceEEEEeecCeeccccceeecCc
Q 020526          136 SGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVG  168 (325)
Q Consensus       136 tglVVdiG~~~t~v~pv~~G~~i~~~~~~~~~g  168 (325)
                      ..+|||+|+++|.++.+.+|.++..  ..+++|
T Consensus         8 Gv~vvDiG~~tt~i~i~~~G~l~~~--~~i~~G   38 (191)
T d1e4ft2           8 GVVVVNLGYNFTGLIAYKNGVPIKI--SYVPVG   38 (191)
T ss_dssp             CEEEEEECSSCEEEEEEETTEEEEE--EEESCC
T ss_pred             CEEEEEeCCCcEEEEEEECCeEEEE--EEEeeC
Confidence            3589999999999999999999876  446777

>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Prokaryotic actin homolog MreB
species: Thermotoga maritima [TaxId: 2336]

Probab=98.46  E-value=1.3e-06  Score=67.07  Aligned_cols=127  Identities=11%  Similarity=0.059  Sum_probs=91.1

Q ss_pred             ceEEEEcCCCcEEEeeeCCCCCCcEecccceeecCC--Ccc-cccCcccccc-----Cce-eccccCCeecCHHHHHHHH
Q 020526            2 EAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLE--DGS-SSVDNSTLVE-----DVT-VDPVVRGFIRDWDAMEDLL   72 (325)
Q Consensus         2 ~~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~~--~~~-~g~~~~~~~~-----~~~-~~p~~~g~i~d~~~~~~il   72 (325)
                      +.|-||+||.++.+.+. ++ .-....|+.......  ... +| +.+....     ... .+++.++...+.+..+.++
T Consensus         1 ~~iGIDlGTtns~va~~-~~-~~v~~~~~~~~~~~~~~~~~~~g-~~a~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~   77 (137)
T d1jcea1           1 KDIGIDLGTANTLVFLR-GK-GIVVNEPSVIAIDSTTGEILKVG-LEAKNMIGKTPATIKAIRPMRDGVIADYTVALVML   77 (137)
T ss_dssp             CEEEEEECSSEEEEEET-TT-EEEEEEESCEEEETTTCCEEEES-HHHHTTTTCCCTTEEEECCEETTEESSHHHHHHHH
T ss_pred             CeEEEEcChhhEEEEEe-CC-CEEeecCCcceEecCCCeEEEEe-hHHhhhhhhccccceeEEeccCCccCcHHHHHHHH
Confidence            46889999999999776 54 233445666654322  222 34 4332221     222 4788899999999999888


Q ss_pred             HHHHHhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhc
Q 020526           73 HHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAV  132 (325)
Q Consensus        73 ~~~~~~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~  132 (325)
                      .++...........-..++++.|......+|+.+.+.. +..|+..+.++++|++|++++
T Consensus        78 ~~~~~~~~~~~~~~~~~~VItVPa~f~~~qR~at~~Aa-~~AGl~vv~li~EPtAAAiGa  136 (137)
T d1jcea1          78 RYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAG-LEAGASKVFLIEEPMAAAIGS  136 (137)
T ss_dssp             HHHHHHHHTSCCSCCCEEEEEECTTCCHHHHHHHHHHH-HHTTCSEEEEEEHHHHHHHHT
T ss_pred             HHHHHHHHhhcCccccceEEEeecccCHHHHHHHHHHH-HHcCCCEEEEeCCHHHHHhCC
Confidence            88775543322225688999999999999999888755 779999999999999999875

>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Escherichia coli, gene dnaK [TaxId: 562]

Probab=97.56  E-value=2.2e-05  Score=63.87  Aligned_cols=68  Identities=19%  Similarity=0.211  Sum_probs=48.3

Q ss_pred             CcHHHHHHHHHHhCChHHHHhccccEEEecCCCCccchHHHHHHhhccCCCCcceEEeCCCCCCCCCCCceeeeehhhhh
Q 020526          217 HGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAIL  296 (325)
Q Consensus       217 ~~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~  296 (325)
                      ..+.++|.+++.+...+..  =...|+|+||+|++|.+.++|++.+.       .++....+      |..+.=.||+++
T Consensus       129 ~~~~~~i~~~l~~a~~~~~--~Id~v~lvGG~sr~p~l~~~i~~~f~-------~~~~~~~~------p~~aVa~GAa~~  193 (198)
T d1dkgd2         129 NRSIELLKVALQDAGLSVS--DIDDVILVGGQTRMPMVQKKVAEFFG-------KEPRKDVN------PDEAVAIGAAVQ  193 (198)
T ss_dssp             HHHHHHHHHHHHTTTCCTT--TCCEEEEESGGGGSHHHHHHHHHHHS-------SCCBCSSC------TTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCChh--HCcEEEEEcCccCCHHHHHHHHHHHC-------CCCCCCCC------hHHHHHHHHHHH
Confidence            4577778888877654322  25669999999999999999998881       11122223      557788999999


Q ss_pred             hcc
Q 020526          297 AKV  299 (325)
Q Consensus       297 a~l  299 (325)
                      |..
T Consensus       194 aa~  196 (198)
T d1dkgd2         194 GGV  196 (198)
T ss_dssp             TTT
T ss_pred             HHh
Confidence            874

>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.46  E-value=0.00025  Score=56.63  Aligned_cols=64  Identities=14%  Similarity=0.030  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHH---hccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCC
Q 020526           67 AMEDLLHHVLY---AGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR  134 (325)
Q Consensus        67 ~~~~il~~~~~---~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~  134 (325)
                      ....+++++..   +.++..   -..++++.|...+..+|+.+.+.+ +..|++.+.++++|.||++++|.
T Consensus       116 l~a~~l~~l~~~a~~~~~~~---~~~~VitvPa~f~~~qr~~~~~Aa-~~AGl~~~~li~EP~AAAl~Ygl  182 (185)
T d1bupa1         116 VSSMVLTKMKEIAEAYLGKT---VTNAVVTVPAYFNDSQRQATKDAG-TIAGLNVLRIINEPTAAAIAYGL  182 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHTSC---CCEEEEEECTTCCHHHHHHHHHHH-HHTTCEEEEEEEHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHhCCC---cCcEEEEECCCCCHHHHHHHHHHH-HHcCCCeEEEEcCHHHHHHHhcc
Confidence            34445555432   234433   356899999999999998888655 88999999999999999999874

>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Escherichia coli, gene dnaK [TaxId: 562]

Probab=97.06  E-value=0.00098  Score=52.85  Aligned_cols=66  Identities=14%  Similarity=0.018  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHH---hccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCCc
Q 020526           66 DAMEDLLHHVLY---AGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRI  135 (325)
Q Consensus        66 ~~~~~il~~~~~---~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~  135 (325)
                      +....+++++..   +.++...   ..++++.|...+...|+.+.+.+ +..|++.+.++++|.+|++++|..
T Consensus       112 ~l~a~~L~~l~~~a~~~~~~~~---~~~VitVPa~f~~~~r~~l~~Aa-~~AG~~~~~li~EP~AAAl~Ygl~  180 (183)
T d1dkgd1         112 QISAEVLKKMKKTAEDYLGEPV---TEAVITVPAYFNDAQRQATKDAG-RIAGLEVKRIINEPTAAALAYGLD  180 (183)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCC---CEEEECBCTTCCHHHHHHHHHHH-HHTTCEESCCCBHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHHHHhCCCC---CeEEEEECCCCCHHHHHHHHHHH-HHcCCCEEEEecCHHHHHHHhccc
Confidence            344455555432   3444333   67899999999999998887765 668999999999999999988853

>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.01  E-value=0.00018  Score=57.89  Aligned_cols=68  Identities=18%  Similarity=0.281  Sum_probs=43.8

Q ss_pred             cHHHHHHHHHHhCChHHHHhccccEEEecCCCCccchHHHHHHhhccCCCCcceEEeCCCCCCCCCCCceeeeehhhhhh
Q 020526          218 GIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILA  297 (325)
Q Consensus       218 ~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a  297 (325)
                      .+.+.|.+++.+....  ..=...|+++||+|.+|.+.+++++-+.   .   ..+..+.+      |..+.=.||+++|
T Consensus       124 ~~~~~i~~~l~~~~~~--~~~i~~V~lvGG~sr~p~v~~~i~~~f~---~---~~i~~~~~------p~~aVa~GaA~~a  189 (193)
T d1bupa2         124 GTLDPVEKALRDAKLD--KSQIHDIVLVGGSTRIPKIQKLLQDFFN---G---KELNKSIN------PDEAVAYGAAVQA  189 (193)
T ss_dssp             HTHHHHHHHHHHHTCC--GGGCCEEEEESGGGGCHHHHHHHHHHTT---T---CCCBCSSC------GGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCC--HHHCCEEEEECCccccHHHHHHHHHHcC---C---CCCCCCCC------hHHHHHHHHHHHH
Confidence            3455555555543221  1124579999999999999999987661   0   11223333      6788889999998


Q ss_pred             cc
Q 020526          298 KV  299 (325)
Q Consensus       298 ~l  299 (325)
                      ..
T Consensus       190 a~  191 (193)
T d1bupa2         190 AI  191 (193)
T ss_dssp             HH
T ss_pred             Hh
Confidence            63

>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Plasmid segregation protein ParM
species: Escherichia coli [TaxId: 562]

Probab=96.96  E-value=5.9e-05  Score=58.81  Aligned_cols=34  Identities=21%  Similarity=0.179  Sum_probs=23.9

Q ss_pred             ceEEEEEcCCCceEEEEeecCeecccc-ceeecCc
Q 020526          135 ISGCTVDIGHGKIDIAPVIEGAVQHIA-SRRFEVG  168 (325)
Q Consensus       135 ~tglVVdiG~~~t~v~pv~~G~~i~~~-~~~~~~g  168 (325)
                      .+-+|||+|+++|.++.+-+|...... ....+.|
T Consensus         7 ~~ilViDiGggTtDi~v~~~~~~~~~~~~~~~~~G   41 (163)
T d2zgya2           7 DSLLIIDLGGTTLDISQVMGKLSGISKIYGDSSLG   41 (163)
T ss_dssp             CEEEEEEECSSCEEEEEEEGGGCCEEEEEEECSCC
T ss_pred             CCEEEEECCCCcEEEEEEcCCeEEEEEeecccccc
Confidence            577999999999999987666554332 3344555

>d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Ta0583-like
domain: Hypothetical protein Ta0583
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.34  E-value=0.00028  Score=54.72  Aligned_cols=34  Identities=18%  Similarity=0.192  Sum_probs=24.0

Q ss_pred             ceEEEEEcCCCceEEEEeecCe--eccccceeecCc
Q 020526          135 ISGCTVDIGHGKIDIAPVIEGA--VQHIASRRFEVG  168 (325)
Q Consensus       135 ~tglVVdiG~~~t~v~pv~~G~--~i~~~~~~~~~g  168 (325)
                      .+.+|||+|+++|.++.+.+|.  +........+.|
T Consensus         6 g~~lviDIG~gTtDi~v~~~~~~~~~~~~~~~~~~g   41 (161)
T d2fsja1           6 GYGVVIDVGSRTTDVLTINLMDMEPVVELSFSLQIG   41 (161)
T ss_dssp             SEEEEEEECSSCEEEEEEETTTTEECGGGCEEESCC
T ss_pred             CcEEEEEcCcCeEEEEEEECCCeEEEEEEeccHhHH
Confidence            4579999999999999887653  444333444555

>d2fsja2 c.55.1.12 (A:1-164) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Ta0583-like
domain: Hypothetical protein Ta0583
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=90.13  E-value=0.42  Score=36.02  Aligned_cols=124  Identities=15%  Similarity=0.059  Sum_probs=65.7

Q ss_pred             CceEEEEcCCCcEEEeeeCCCCCCcEecccceeecCCC-------------------cccccCccccccCceeccccCCe
Q 020526            1 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLED-------------------GSSSVDNSTLVEDVTVDPVVRGF   61 (325)
Q Consensus         1 m~~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~~~-------------------~~~g~~~~~~~~~~~~~p~~~g~   61 (325)
                      |-.|-||+|-+++|+-..  + .-...|||.++.....                   +++| +.|...  ...+++...+
T Consensus         1 m~iigiD~G~g~tK~~~~--~-~~~~~fPS~v~~~~~~~~~~~~~~~~~~~~~~~~~y~vG-~~A~~~--~~~~~~~~dk   74 (164)
T d2fsja2           1 MVVVGLDVGYGDTKVIGV--D-GKRIIFPSRWAVTETESWGIGGKIPVLSTDGGQTKFIYG-KYASGN--NIRVPQGDGR   74 (164)
T ss_dssp             CEEEEEEECSSEEEEECG--G-GCEEEEESCEEEECCSCC----CCCCBBSSTTSSEEEEG-GGCCSS--CCBCCSSTTC
T ss_pred             CEEEEEEcCCcceEEEec--C-CCEEEEeeeceeccccccccCCCceeEEEEeCCeEEEEc-cchhhc--cccccccccc
Confidence            677889999999997333  3 3346789988652111                   1223 222110  0113333333


Q ss_pred             ecCHHHHHHHHHHHHHhccCCCCCCCceE--EEEcCCCCCHHHHHHHHHHhhh-------------hcCCCeEEEechhh
Q 020526           62 IRDWDAMEDLLHHVLYAGLGWEEGNEGQI--LFTDPLCSPKAVREQLVQLMFE-------------TFNISGFYSSEQAV  126 (325)
Q Consensus        62 i~d~~~~~~il~~~~~~~l~~~~~~~~~v--ll~~~~~~~~~~r~~l~~~lfe-------------~~~~~~v~~~~~~~  126 (325)
                      ..+- ....++..++..........+..+  ++.-|.-.-...++++.+.+..             .+.+..+.+.||++
T Consensus        75 ~~~~-~~~~l~l~al~~~~~~~~~~~~~v~lv~GLP~~~~~~~ke~~~~~l~~~~~~~~~~~g~~~~i~I~~v~V~pQg~  153 (164)
T d2fsja2          75 LASK-EAFPLIAAALWESGIHNDGSPVDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRPQGV  153 (164)
T ss_dssp             TTST-TTHHHHHHHHHHHCCCC---CEEEEEEEEECGGGHHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEEEETTH
T ss_pred             ccCH-HHHHHHHHHHHHHhhhcCCCceeEEEEecCCHHHHHHHHHHHHHHhcCCCceEEeeCCeEEEEEEeEEEEecCCH
Confidence            3332 234455555544322222133343  4445554445678888887742             24566788888888


Q ss_pred             hhhhh
Q 020526          127 LSLYA  131 (325)
Q Consensus       127 ~a~~~  131 (325)
                      .|.+.
T Consensus       154 ga~~~  158 (164)
T d2fsja2         154 GAALY  158 (164)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87764

>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Hydroxyglutaryl-CoA dehydratase component A
species: Acidaminococcus fermentans [TaxId: 905]

Probab=88.58  E-value=0.092  Score=42.49  Aligned_cols=45  Identities=20%  Similarity=0.378  Sum_probs=34.2

Q ss_pred             cEEEecCCCCccchHHHHHHhhccCCCCcceEEeCCCCCCCCCCCceeeeehhhhhhc
Q 020526          241 NTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAK  298 (325)
Q Consensus       241 nIil~GG~s~~~G~~~rl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~  298 (325)
                      .|++.||.++.++|.++|++.|       +.+++.++.      +..+.=+||+++|.
T Consensus       210 ~Iv~gGGv~~~~~~~~~l~~~l-------~~~i~~~~~------~~~agaiGAA~lA~  254 (259)
T d1huxa_         210 DVVMTGGVAQNYGVRGALEEGL-------GVEIKTSPL------AQYNGALGAALYAY  254 (259)
T ss_dssp             SEEEESGGGGCHHHHHHHHHHH-------CSCEECCGG------GGGHHHHHHHHHHH
T ss_pred             cEEEEccccccHHHHHHHHHHH-------CCCEEcCCC------ccHHHHHHHHHHHH
Confidence            4999999999999999999888       234444443      45556689998875

>d2zgya1 c.55.1.1 (A:1-157) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Plasmid segregation protein ParM
species: Escherichia coli [TaxId: 562]

Probab=86.77  E-value=1.1  Score=33.42  Aligned_cols=63  Identities=22%  Similarity=0.194  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHhccCCCCCCCceEEEEcCCC--C------CHHHHHHHHHHhhh--------hcCCCeEEEechhhhhhh
Q 020526           67 AMEDLLHHVLYAGLGWEEGNEGQILFTDPLC--S------PKAVREQLVQLMFE--------TFNISGFYSSEQAVLSLY  130 (325)
Q Consensus        67 ~~~~il~~~~~~~l~~~~~~~~~vll~~~~~--~------~~~~r~~l~~~lfe--------~~~~~~v~~~~~~~~a~~  130 (325)
                      ....++.+++.+ .+.++ .+-.+++.-|.-  .      .+...++..+-+++        .+.+.+|.+.||+++|.|
T Consensus        77 ~~~ali~~aL~~-~~~~~-~~v~~~~glp~~~f~~~~~~~~~~~i~~k~~~~~~~~~~~~~~~~~I~~V~V~Pq~~~A~~  154 (157)
T d2zgya1          77 VNVVAVHHALLT-SGLPV-SEVDIVCTLPLTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGY  154 (157)
T ss_dssp             HHHHHHHHHHHH-HSCCS-CEEEEEEEECHHHHBCTTSSBCHHHHHHHHHHTTSCEEETTBCCCEEEEEEEEESSHHHHH
T ss_pred             HHHHHHHHHHHH-cCCCC-CcEEEEecCCHHHHhhhhhHHHHHHHHhhhcccceeeecCCeEEEEEEEEEEEeCcHHhhh
Confidence            455667777754 45565 566677777742  1      12333333344442        356789999999999987


Q ss_pred             h
Q 020526          131 A  131 (325)
Q Consensus       131 ~  131 (325)
                      .
T Consensus       155 ~  155 (157)
T d2zgya1         155 E  155 (157)
T ss_dssp             H
T ss_pred             c
Confidence            5

>d1q18a1 c.55.1.7 (A:2-111) Glucokinase Glk {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glucokinase
domain: Glucokinase Glk
species: Escherichia coli [TaxId: 562]

Probab=85.63  E-value=0.53  Score=32.74  Aligned_cols=25  Identities=12%  Similarity=0.004  Sum_probs=20.9

Q ss_pred             HHhhhhcCCCeEEEechhhhhhhhc
Q 020526          108 QLMFETFNISGFYSSEQAVLSLYAV  132 (325)
Q Consensus       108 ~~lfe~~~~~~v~~~~~~~~a~~~~  132 (325)
                      +-+-+.++.+.|.+.++.-+++++.
T Consensus        83 ~~l~~~~~~~~v~v~NDa~AaA~gi  107 (110)
T d1q18a1          83 AEMKKNLGFSHLEIINDFTAVSMAI  107 (110)
T ss_dssp             HHHHHHTTCSEEEEEEHHHHHHHHG
T ss_pred             HHHHHHhCCCcEEEEehHHHHhccc
Confidence            3456778999999999999999875

>d2ap1a1 c.55.1.10 (A:118-303) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Putative regulator protein YcfX
species: Salmonella typhimurium [TaxId: 90371]

Probab=83.94  E-value=0.14  Score=39.43  Aligned_cols=67  Identities=16%  Similarity=0.194  Sum_probs=42.4

Q ss_pred             cHHHHHHHHHHhCChHHHHhccccEEEecCCCCccchHHHHHHhh-cc-CCCCcceEEeCCCCCCCCCCCceeeeehhhh
Q 020526          218 GIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GL-CSSAIRPTLVKPPEYMPENLTLYSAWIGGAI  295 (325)
Q Consensus       218 ~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL-~~-~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si  295 (325)
                      .|...|.+.+.-+++|.       |||.||.+..+-|.+++.+.+ +. .+....+++....-      ...+.=+||++
T Consensus       115 ~la~~i~nl~~~ldPe~-------IvlGG~i~~~~~~~~~l~~~~~~~~~~~~~~~~I~~s~l------g~~a~~~GAA~  181 (186)
T d2ap1a1         115 LLAVCLGNILTIVDPDL-------LVIGGGLSNFTAITTQLAERLPRHLLPVARAPRIERARH------GDAGGMRGAAF  181 (186)
T ss_dssp             HHHHHHHHHHHHHCCSE-------EEEESGGGGSTHHHHSSGGGSGGGSCTTCCCCEEEECSC------TTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCcCE-------EEECCchhhhHHHHHHHHHHHHHHhcCcCCCCEEEECCC------CChHHHHHHHH
Confidence            45555666666666666       888888888888888777777 43 33333445543322      34556678877


Q ss_pred             hh
Q 020526          296 LA  297 (325)
Q Consensus       296 ~a  297 (325)
                      ++
T Consensus       182 la  183 (186)
T d2ap1a1         182 LH  183 (186)
T ss_dssp             TT
T ss_pred             Hh
Confidence            65

>d2aa4a2 c.55.1.10 (A:120-289) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: N-acetylmannosamine kinase NanK
species: Escherichia coli [TaxId: 562]

Probab=83.69  E-value=0.24  Score=37.59  Aligned_cols=68  Identities=15%  Similarity=0.180  Sum_probs=43.5

Q ss_pred             cHHHHHHHHHHhCChHHHHhccccEEEecCCCCccchHHHHHHhhccCCCCcceEEeCCCCCCCCCCCceeeeehhhhhh
Q 020526          218 GIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILA  297 (325)
Q Consensus       218 ~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a  297 (325)
                      .|..+|...+.-++++.       |||.|+.+..+-|.+++++.+...+...++++.....      ...+.-+||+++|
T Consensus       101 ~la~~l~~l~~~ldP~~-------IvlgG~i~~~~~~~~~i~~~~~~~~~~~~~~I~~s~l------~~~a~~~GAA~lA  167 (170)
T d2aa4a2         101 TLARLIADIKATTDCQC-------VVVGGSVGLAEGYLALVETYLAQEPAAFHVDLLAAHY------RHDAGLLGAALLA  167 (170)
T ss_dssp             HHHHHHHHHHHHHCCSE-------EEEEHHHHTSTTHHHHHHHHHTTSCGGGCCEEEECSC------SSCHHHHHHHHHH
T ss_pred             HHHHHHHhhhheECCCE-------EEEeChhhhhhhHHHHHHHHHHhccCCCCCeEEecCC------CCcHHHHHHHHHH
Confidence            34555555555556554       8898888888889999988882222233445543332      3456668998887


Q ss_pred             c
Q 020526          298 K  298 (325)
Q Consensus       298 ~  298 (325)
                      .
T Consensus       168 ~  168 (170)
T d2aa4a2         168 Q  168 (170)
T ss_dssp             H
T ss_pred             C
Confidence            4