Citrus Sinensis ID: 020527

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-----
Protein Sequence
MAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTESLT
Secondary Structure (PSIPRED)
cEEEEccEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEEEEEEcccccccccccccEEEEccccEEEEEccccccHHHHHHHHHHHccccccEEEEcccccccccHHHHHHHccccccccccccccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccccEEEccccccccccccHHHHHHHHHHHHcccccccEEEEEccccHHHccccEEEEEEccEEEEEccHHHHHHccccHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cEEEEEHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEEEEccccccccccEEEEEEEEccccEEEEEccccccHHHHHHHHcccccccEEEEEEccEEHHHEcHHHHHHHEEEEcccccccccEHHHHHHccccccccHHHHHHHHHHHccHHHHHccccHHHcEcccccccHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHHHHcccccccEEEEEEEHHHHccccEEEEEEccEEEEEccHHHHHHcccHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MAVLLGGMSimigqvspeQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDllpsnqflsEGVKLQRLMGHVQFVNisfhypsrptvpilnhvcLTIEANEVVAIVGLSGSGKSTFVNLLLRLyepsdgqiyidgfpltdlDIRWLREKigfvgqepqllqmdiksnimygcpkdvkneDIEWAAKQAYVHEFILslpcgyetlvdddllsggQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLstikavdrivviddgriievgnHAELLHKGRLYAKLVKRQTESLT
Flexible Loop (DISEMBL)
MAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGfvgqepqllqMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHalrndcktkRTVIViahrlstikavdrivVIDDGRIIEvgnhaellhkgrlyaklvkrqteslt
Low Complexity Region (SEG)
MAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAvdrivviddgriievgNHAELLHKGRLYAKLVKRQTESLT
Disordered region (IsUnstruct)
***LLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV********
Disordered Region (DISOPRED)
MAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDL**************RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV*RQT****
Disordered Region (DISEMBL)
MAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTESLT
Disordered Region (DISPRO)
MAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTE***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTESLT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	325	2.2.26 [Sep-21-2011]
Q8RY46	700	ABC transporter B family	yes	no	0.996	0.462	0.660	1e-129
Q54W24	767	ABC transporter B family	yes	no	0.932	0.395	0.444	5e-68
Q56A55	714	ATP-binding cassette sub-	yes	no	0.963	0.438	0.450	1e-67
Q9ZR72	1286	ABC transporter B family	no	no	0.806	0.203	0.507	3e-67
Q9C7F2	1247	ABC transporter B family	no	no	0.870	0.226	0.474	2e-66
Q9NRK6	738	ATP-binding cassette sub-	yes	no	0.956	0.421	0.439	7e-66
Q9C7F8	1245	ABC transporter B family	no	no	0.870	0.227	0.464	6e-65
Q9JI39	715	ATP-binding cassette sub-	yes	no	0.956	0.434	0.433	7e-65
P43245	1277	Multidrug resistance prot	no	no	0.876	0.223	0.464	8e-65
P21448	1276	Multidrug resistance prot	yes	no	0.898	0.228	0.450	1e-64

>sp|Q8RY46|AB26B_ARATH ABC transporter B family member 26, chloroplastic OS=Arabidopsis thaliana GN=ABCB26 PE=1 SV=1

 Score =  461 bits (1187), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 214/324 (66%), Positives = 274/324 (84%)

Query: 1   MAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDL 60
           +AVL+GG+SI+ GQ++ EQLTK++LY EWLIYATW + DNLSSL+QS+GA+EKVFQ++DL
Sbjct: 376 IAVLVGGLSILAGQITAEQLTKFLLYSEWLIYATWWVGDNLSSLMQSVGASEKVFQMMDL 435

Query: 61  LPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSG 120
            PS+QF+S+G +LQRL GH++FV++SF YPSR  V ++ +V +++   EVVAIVGLSGSG
Sbjct: 436 KPSDQFISKGTRLQRLTGHIEFVDVSFSYPSRDEVAVVQNVNISVHPGEVVAIVGLSGSG 495

Query: 121 KSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC 180
           KST VNLLL+LYEP+ GQI +DG PL +LD++WLR++IG+VGQEP+L + DI SNI YGC
Sbjct: 496 KSTLVNLLLQLYEPTSGQILLDGVPLKELDVKWLRQRIGYVGQEPKLFRTDISSNIKYGC 555

Query: 181 PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILL 240
            +++  EDI  AAKQAY H+FI +LP GY T+VDDDLLSGGQKQRIAIARAILRDP IL+
Sbjct: 556 DRNISQEDIISAAKQAYAHDFITALPNGYNTIVDDDLLSGGQKQRIAIARAILRDPRILI 615

Query: 241 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEV 300
           LDEATSALD+ESEH VKGVL ++ ND  TKR+VIVIAHRLSTI+A DRIV +D GR++E+
Sbjct: 616 LDEATSALDAESEHNVKGVLRSIGNDSATKRSVIVIAHRLSTIQAADRIVAMDSGRVVEM 675

Query: 301 GNHAELLHKGRLYAKLVKRQTESL 324
           G+H ELL K  LYA+L KRQ +++
Sbjct: 676 GSHKELLSKDGLYARLTKRQNDAV 699

Arabidopsis thaliana (taxid: 3702)

>sp|Q54W24|ABCB4_DICDI ABC transporter B family member 4 OS=Dictyostelium discoideum GN=abcB4 PE=3 SV=1

 Score =  258 bits (658), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 141/317 (44%), Positives = 203/317 (64%), Gaps = 14/317 (4%)

Query: 6   GGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLP--- 62
           GG  +  G+++  QLT ++++   +  +  ++    + ++ ++G  +++ +LI+ +P   
Sbjct: 451 GGTLVSRGEMTGGQLTSFIIHTMNMQSSFSQLSILFTQIMSAMGGMQRITELINRVPLIN 510

Query: 63  SNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKS 122
           SNQ    G KL+ L G ++F+N+ F YP+RP V +LN + LT++  +VVA+ G SG GKS
Sbjct: 511 SNQ----GFKLRELKGEIKFINVDFKYPTRPHVHVLNGLNLTLKPGQVVALAGSSGGGKS 566

Query: 123 TFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK 182
           T   LL R Y+ S+G I IDG+ +  L+ +WLR +IG V QEP L    I  N+ YG P 
Sbjct: 567 TIAGLLERFYDISNGDITIDGYSIKQLNAKWLRSRIGIVSQEPSLFATTILENLRYGNPN 626

Query: 183 DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILL 240
             ++E IE AAK A  H+FI + P GYET+V +    LSGGQKQRIAIARAIL++P I++
Sbjct: 627 ATEDEIIE-AAKLANAHQFISNFPKGYETIVGERGVQLSGGQKQRIAIARAILKNPQIII 685

Query: 241 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEV 300
           LDEATSALDS+SE  V+  L  L       RT +VIAHRLST++  D I V+  G+I E 
Sbjct: 686 LDEATSALDSQSELLVQTALDNLMKG----RTTLVIAHRLSTVQNADLIGVLSHGKIAEF 741

Query: 301 GNHAELLHKGRLYAKLV 317
           GNH EL++   LY KLV
Sbjct: 742 GNHNELMNHKGLYYKLV 758

Dictyostelium discoideum (taxid: 44689)

>sp|Q56A55|ABCB8_DANRE ATP-binding cassette sub-family B member 8, mitochondrial OS=Danio rerio GN=abcb8 PE=2 SV=1

 Score =  256 bits (655), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 145/322 (45%), Positives = 194/322 (60%), Gaps = 9/322 (2%)

Query: 3   VLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLP 62
           +  GG  +    +SP  L  +++  + +  +   +      +++ + A  +VF+ + L P
Sbjct: 392 IFAGGSLMARDDLSPGDLMSFLVASQTVQRSLASISILFGQMVRGMSAGARVFEYLALDP 451

Query: 63  SNQFLSEG-VKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGK 121
           S      G + L  LMG V F+NISF YP+RP   IL H  LT+   + VAIVG SG GK
Sbjct: 452 SVPLTGGGRIPLDSLMGRVDFMNISFSYPTRPGNQILKHFSLTLPPCKTVAIVGESGGGK 511

Query: 122 STFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK-IGFVGQEPQLLQMDIKSNIMYGC 180
           ST   LL R Y+PS G + +DG  +  LD  WLR   IGF+ QEP L    +  NI +G 
Sbjct: 512 STVAALLERFYDPSSGVVMLDGLDIRTLDPSWLRGHVIGFISQEPVLFGTSVMENIRFGK 571

Query: 181 PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAI 238
           P     E +  AAKQA  H FI     GY T+V +    LSGGQKQRIAIARA++++P+I
Sbjct: 572 PSATDAEVVS-AAKQANAHNFITGFADGYNTVVGERGVTLSGGQKQRIAIARALVKNPSI 630

Query: 239 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRII 298
           L+LDEATSALD+ESE  V+  L    +   T RTV++IAHRLSTI+A D I V+ +GRI+
Sbjct: 631 LILDEATSALDAESERVVQEAL----DRATTGRTVLIIAHRLSTIQAADLICVMSNGRIV 686

Query: 299 EVGNHAELLHKGRLYAKLVKRQ 320
           E G H ELL KG LYA+L+KRQ
Sbjct: 687 EAGTHLELLSKGGLYAELIKRQ 708

Danio rerio (taxid: 7955)

>sp|Q9ZR72|AB1B_ARATH ABC transporter B family member 1 OS=Arabidopsis thaliana GN=ABCB1 PE=1 SV=1

 Score =  255 bits (651), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 138/272 (50%), Positives = 183/272 (67%), Gaps = 10/272 (3%)

Query: 54  VFQLIDLLPSNQFLSE-GVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVA 112
           +F++ID  P+ +  SE GV+L  + G V+  N+ F YPSRP V ILN+ CL++ A + +A
Sbjct: 341 IFRIIDHKPTIERNSESGVELDSVTGLVELKNVDFSYPSRPDVKILNNFCLSVPAGKTIA 400

Query: 113 IVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDI 172
           +VG SGSGKST V+L+ R Y+P+ GQ+ +DG  L  L +RWLR++IG V QEP L    I
Sbjct: 401 LVGSSGSGKSTVVSLIERFYDPNSGQVLLDGQDLKTLKLRWLRQQIGLVSQEPALFATSI 460

Query: 173 KSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIAR 230
           K NI+ G P D    +IE AA+ A  H FI+ LP G++T V +    LSGGQKQRIAIAR
Sbjct: 461 KENILLGRP-DADQVEIEEAARVANAHSFIIKLPDGFDTQVGERGLQLSGGQKQRIAIAR 519

Query: 231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIV 290
           A+L++PAILLLDEATSALDSESE  V+  L    +     RT ++IAHRLSTI+  D + 
Sbjct: 520 AMLKNPAILLLDEATSALDSESEKLVQEAL----DRFMIGRTTLIIAHRLSTIRKADLVA 575

Query: 291 VIDDGRIIEVGNHAELLHKGR--LYAKLVKRQ 320
           V+  G + E+G H EL  KG   +YAKL+K Q
Sbjct: 576 VLQQGSVSEIGTHDELFSKGENGVYAKLIKMQ 607

Auxin efflux transporter that acts as a negative regulator of light signaling to promote hypocotyl elongation. Mediates the accumulation of chlorophyll and anthocyanin, as well as the expression of genes in response to light. Participates directly in auxin efflux and thus regulates the polar (presumably basipetal) auxin transport (from root tips to root elongating zone). Transports also some auxin metabolites such as oxindoleacetic acid and indoleacetaldehyde. Involved in divers auxin-mediated responses including gravitropism, phototropism and lateral root formation. Confers resistance to herbicides such as dicamba, pendimethalin, oryzalin, and monosodium acid methanearsonate (MSMA), but not to herbicides such as glyphosate, atrazine, bentazon and fluazifop-p-butyl. Mediates also resistance to xenobiotics such as cycloheximide and the cytokinin N6-(2-isopentenyl)adenine (2IP).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7F2|AB14B_ARATH ABC transporter B family member 14 OS=Arabidopsis thaliana GN=ABCB14 PE=3 SV=1

 Score =  252 bits (644), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 139/293 (47%), Positives = 193/293 (65%), Gaps = 10/293 (3%)

Query: 32  YATWRMVDNLSSLLQSIGATEKVFQLI--DLLPSNQFLSEGVKLQRLMGHVQFVNISFHY 89
           +A  + V +LS++ +   A   +F++I  + L S++ L  G  LQ ++G ++F  +SF Y
Sbjct: 323 FALGQAVPSLSAISKGRVAAANIFKMIGNNNLESSERLENGTTLQNVVGKIEFCGVSFAY 382

Query: 90  PSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL 149
           PSRP + +  ++  TI + +  A VG SGSGKST ++++ R YEP  G+I +DG  + +L
Sbjct: 383 PSRPNM-VFENLSFTIHSGKTFAFVGPSGSGKSTIISMVQRFYEPRSGEILLDGNDIKNL 441

Query: 150 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGY 209
            ++WLRE++G V QEP L    I SNI+ G  K   ++ IE AAK A    FI SLP GY
Sbjct: 442 KLKWLREQMGLVSQEPALFATTIASNILLGKEKANMDQIIE-AAKAANADSFIKSLPNGY 500

Query: 210 ETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 267
            T V +    LSGGQKQRIAIARA+LR+P ILLLDEATSALD+ESE  V+  L    ++ 
Sbjct: 501 NTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEKIVQQAL----DNV 556

Query: 268 KTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQ 320
             KRT IVIAHRLSTI+ VD+IVV+ DG++ E G+H+EL+ +G  YA LV  Q
Sbjct: 557 MEKRTTIVIAHRLSTIRNVDKIVVLRDGQVRETGSHSELISRGGDYATLVNCQ 609

Arabidopsis thaliana (taxid: 3702)

>sp|Q9NRK6|ABCBA_HUMAN ATP-binding cassette sub-family B member 10, mitochondrial OS=Homo sapiens GN=ABCB10 PE=1 SV=2

 Score =  251 bits (640), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 142/323 (43%), Positives = 203/323 (62%), Gaps = 12/323 (3%)

Query: 6   GGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQ 65
           GG+ +    ++  +L+ +++Y  W+  +   +    S L++ +GA  ++++L++  P   
Sbjct: 417 GGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLP 476

Query: 66  FLSEGVKL--QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKST 123
           F +EGV L  +   G ++F N+ F YP+RP VPI     L+I +  V A+VG SGSGKST
Sbjct: 477 F-NEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKST 535

Query: 124 FVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC--P 181
            ++LLLRLY+P+ G I +DG  +  L+  WLR KIG V QEP L    I  NI YG   P
Sbjct: 536 VLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDP 595

Query: 182 KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAIL 239
             V  E+I+  A+ A    FI + P G+ T+V +   LLSGGQKQRIAIARA+L++P IL
Sbjct: 596 SSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKIL 655

Query: 240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIE 299
           LLDEATSALD+E+E+ V+  L  L +     RTV+VIAHRLSTIK  + + V+D G+I E
Sbjct: 656 LLDEATSALDAENEYLVQEALDRLMDG----RTVLVIAHRLSTIKNANMVAVLDQGKITE 711

Query: 300 VGNHAELLHKGR-LYAKLVKRQT 321
            G H ELL K   +Y KL+ +Q+
Sbjct: 712 YGKHEELLSKPNGIYRKLMNKQS 734

May mediate critical mitochondrial transport functions related to heme biosynthesis.

Homo sapiens (taxid: 9606)

>sp|Q9C7F8|AB13B_ARATH ABC transporter B family member 13 OS=Arabidopsis thaliana GN=ABCB13 PE=3 SV=1

 Score =  248 bits (632), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 136/293 (46%), Positives = 189/293 (64%), Gaps = 10/293 (3%)

Query: 32  YATWRMVDNLSSLLQSIGATEKVFQLI--DLLPSNQFLSEGVKLQRLMGHVQFVNISFHY 89
           +A  +   +LS++ +   A   +F++I  +   S+Q L EG  LQ + G ++F  +SF Y
Sbjct: 322 FALGQAAPSLSAIAKGRVAAANIFRMIGNNNSESSQRLDEGTTLQNVAGRIEFQKVSFAY 381

Query: 90  PSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL 149
           PSRP + +  ++  TI + +  A VG SGSGKST ++++ R YEP+ G+I +DG  +  L
Sbjct: 382 PSRPNM-VFENLSFTIRSGKTFAFVGPSGSGKSTIISMVQRFYEPNSGEILLDGNDIKSL 440

Query: 150 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGY 209
            ++W RE++G V QEP L    I SNI+ G      ++ IE AAK A    FI SLP GY
Sbjct: 441 KLKWFREQLGLVSQEPALFATTIASNILLGKENANMDQIIE-AAKAANADSFIKSLPNGY 499

Query: 210 ETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 267
            T V +    LSGGQKQRIAIARA+LR+P ILLLDEATSALD+ESE  V+  L    ++ 
Sbjct: 500 NTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEKIVQQAL----DNV 555

Query: 268 KTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQ 320
             KRT IV+AHRLSTI+ VD+IVV+ DG++ E G+H+EL+ +G  YA LV  Q
Sbjct: 556 MEKRTTIVVAHRLSTIRNVDKIVVLRDGQVRETGSHSELMLRGGDYATLVNCQ 608

Arabidopsis thaliana (taxid: 3702)

>sp|Q9JI39|ABCBA_MOUSE ATP-binding cassette sub-family B member 10, mitochondrial OS=Mus musculus GN=Abcb10 PE=2 SV=1

 Score =  247 bits (631), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 140/323 (43%), Positives = 202/323 (62%), Gaps = 12/323 (3%)

Query: 6   GGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQ 65
           GG+ +    ++  +L+ +++Y  W+  +   +    S L++ +GA  ++++L++  P   
Sbjct: 382 GGLLMGSAHMTVGELSSFLMYAFWVGLSIGGLSSFYSELMKGLGAGGRLWELLERQPRLP 441

Query: 66  FLSEGVKL--QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKST 123
           F +EG+ L  +   G ++F N+ F YP+RP V +     L+I +  V A+VG SGSGKST
Sbjct: 442 F-NEGMVLDEKTFQGALEFRNVHFTYPARPEVSVFQDFSLSIPSGSVTALVGPSGSGKST 500

Query: 124 FVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK- 182
            V+LLLRLY+P+ G + +DG  +  L+  WLR KIG V QEP L    +  NI YG    
Sbjct: 501 VVSLLLRLYDPNSGTVSLDGHDIRQLNPVWLRSKIGTVSQEPVLFSCSVAENIAYGADNL 560

Query: 183 -DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAIL 239
             V  + +E AA+ A   EFI S P G++T+V +   LLSGGQKQRIAIARA+L++P IL
Sbjct: 561 SSVTAQQVERAAEVANAAEFIRSFPQGFDTVVGEKGILLSGGQKQRIAIARALLKNPKIL 620

Query: 240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIE 299
           LLDEATSALD+E+EH V+  L  L       RTV++IAHRLSTIK  + + V+D G+I E
Sbjct: 621 LLDEATSALDAENEHLVQEALDRLMEG----RTVLIIAHRLSTIKNANFVAVLDHGKICE 676

Query: 300 VGNHAELLHK-GRLYAKLVKRQT 321
            G H ELL K   LY KL+ +Q+
Sbjct: 677 HGTHEELLLKPNGLYRKLMNKQS 699

May mediate critical mitochondrial transport functions related to heme biosynthesis.

Mus musculus (taxid: 10090)

>sp|P43245|MDR1_RAT Multidrug resistance protein 1 OS=Rattus norvegicus GN=Abcb1 PE=2 SV=1

 Score =  247 bits (630), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 136/293 (46%), Positives = 192/293 (65%), Gaps = 8/293 (2%)

Query: 32  YATWRMVDNLSSLLQSIGATEKVFQLIDLLPS-NQFLSEGVKLQRLMGHVQFVNISFHYP 90
           ++   +  N+ +   + GA  ++F++ID  PS + F ++G K   +MG+++F N+ F+YP
Sbjct: 342 FSIGHLAPNIEAFANARGAAYEIFKIIDNEPSIDSFSTKGHKPDSIMGNLEFKNVYFNYP 401

Query: 91  SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 150
           SR  V IL  + L +++ + VA+VG SG GKST V LL RLY+P +G++ IDG  +  ++
Sbjct: 402 SRSEVKILKGLNLKVKSGQTVALVGNSGCGKSTTVQLLQRLYDPIEGEVSIDGQDIRTIN 461

Query: 151 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE 210
           +R+LRE IG V QEP L    I  NI YG  ++V  ++IE A K+A  ++FI+ LP  ++
Sbjct: 462 VRYLREIIGVVSQEPVLFATTIAENIRYG-RENVTMDEIEKAVKEANAYDFIMKLPHKFD 520

Query: 211 TLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCK 268
           TLV +    LSGGQKQRIAIARA++R+P ILLLDEATSALD+ESE  V+  L   R    
Sbjct: 521 TLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREG-- 578

Query: 269 TKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQT 321
             RT IVIAHRLST++  D I   D G I+E GNH EL+ +  +Y KLV  QT
Sbjct: 579 --RTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHEELMKEKGIYFKLVMTQT 629

Energy-dependent efflux pump responsible for decreased drug accumulation in multidrug-resistant cells.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: 4

>sp|P21448|MDR1_CRIGR Multidrug resistance protein 1 OS=Cricetulus griseus GN=ABCB1 PE=1 SV=2

 Score =  246 bits (629), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 146/324 (45%), Positives = 195/324 (60%), Gaps = 32/324 (9%)

Query: 1   MAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDL 60
            AVL+G  SI  GQ SP                      N+ +   + GA  ++F +ID 
Sbjct: 333 FAVLIGAFSI--GQASP----------------------NIEAFANARGAAYEIFNIIDN 368

Query: 61  LPS-NQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGS 119
            PS + F   G K   + G+++F NI F YPSR  V IL  + L +++ + VA+VG SG 
Sbjct: 369 KPSIDSFSKNGYKPDNIKGNLEFKNIHFSYPSRKDVQILKGLNLKVQSGQTVALVGNSGC 428

Query: 120 GKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYG 179
           GKST V LL RLY+P++G + IDG  +  +++R+LRE IG V QEP L    I  NI YG
Sbjct: 429 GKSTTVQLLQRLYDPTEGVVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYG 488

Query: 180 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPA 237
             ++V  ++IE A K+A  ++FI+ LP  ++TLV +    LSGGQKQRIAIARA++R+P 
Sbjct: 489 -RENVTMDEIEKAVKEANAYDFIMKLPHKFDTLVGERGAQLSGGQKQRIAIARALVRNPK 547

Query: 238 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI 297
           ILLLDEATSALD+ESE  V+  L   R      RT IVIAHRLST++  D I   D G I
Sbjct: 548 ILLLDEATSALDTESEAVVQAALDKAREG----RTTIVIAHRLSTVRNADIIAGFDGGVI 603

Query: 298 IEVGNHAELLHKGRLYAKLVKRQT 321
           +E GNH EL+ +  +Y KLV  QT
Sbjct: 604 VEQGNHEELMREKGIYFKLVMTQT 627

Energy-dependent efflux pump responsible for decreased drug accumulation in multidrug-resistant cells.

Cricetulus griseus (taxid: 10029)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	325
225452338	658	PREDICTED: ABC transporter B family memb	1.0	0.493	0.732	1e-140
296080955	587	unnamed protein product [Vitis vinifera]	1.0	0.553	0.710	1e-140
225470565	705	PREDICTED: ABC transporter B family memb	1.0	0.460	0.710	1e-139
255560910	682	abc transporter, putative [Ricinus commu	1.0	0.476	0.735	1e-138
255574019	684	abc transporter, putative [Ricinus commu	0.978	0.464	0.692	1e-133
449435410	701	PREDICTED: ABC transporter B family memb	1.0	0.463	0.689	1e-133
357485675	712	ABC transporter B family member [Medicag	0.996	0.455	0.665	1e-131
356501630	701	PREDICTED: ABC transporter B family memb	0.996	0.462	0.686	1e-131
357485677	537	ABC transporter B family member [Medicag	0.996	0.603	0.665	1e-131
222619734	557	hypothetical protein OsJ_04503 [Oryza sa	0.996	0.581	0.670	1e-130

>gi|225452338|ref|XP_002272855.1| PREDICTED: ABC transporter B family member 26, chloroplastic [Vitis vinifera] gi|296087608|emb|CBI34864.3| unnamed protein product [Vitis vinifera]

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 238/325 (73%), Positives = 279/325 (85%)

Query: 1   MAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDL 60
           +AVLLGGMSI+ G V+PEQLTKY+LYCEWLIY T R+ DN +SLLQS+GA+ KVFQL+DL
Sbjct: 334 IAVLLGGMSILTGHVTPEQLTKYILYCEWLIYGTLRLGDNFASLLQSVGASGKVFQLMDL 393

Query: 61  LPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSG 120
           LPS+QF SEGVKL+RLMGH++F N+SF+YPSR  VP+L HV ++++ANEVVAIVG+SGSG
Sbjct: 394 LPSDQFKSEGVKLKRLMGHIEFANVSFYYPSRVMVPVLEHVNISVQANEVVAIVGISGSG 453

Query: 121 KSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC 180
           KS+ VNLLLRLYEP+ GQI IDGFPL +LDI WLR KIGFVGQEP L  MD+KSNI YGC
Sbjct: 454 KSSLVNLLLRLYEPTTGQILIDGFPLRELDIGWLRGKIGFVGQEPHLFHMDVKSNIRYGC 513

Query: 181 PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILL 240
            +D+  EDIEWAAK AY H FI SLP GY+T++DD LLSGGQKQRIAIARAILR PAIL+
Sbjct: 514 SRDIGQEDIEWAAKLAYAHGFISSLPDGYDTIIDDHLLSGGQKQRIAIARAILRGPAILI 573

Query: 241 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEV 300
           LDEATSALD+ESEHYV+GVLHA RND   KRTVIVIAHRLST+KA DRIVV+D G +IEV
Sbjct: 574 LDEATSALDAESEHYVEGVLHAFRNDANAKRTVIVIAHRLSTVKAADRIVVMDGGSVIEV 633

Query: 301 GNHAELLHKGRLYAKLVKRQTESLT 325
           G+H +LL K  LYAKL+K QT++L 
Sbjct: 634 GDHQQLLLKDGLYAKLIKTQTDALA 658

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296080955|emb|CBI18648.3| unnamed protein product [Vitis vinifera]

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 231/325 (71%), Positives = 288/325 (88%)

Query: 1   MAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDL 60
           +AVL+GGMSI+ G ++ EQLTK++LY EWLIY+TW + DNLSSL+QS+GA+EKVFQL+DL
Sbjct: 263 IAVLIGGMSILAGHITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDL 322

Query: 61  LPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSG 120
           LPS+QF+S+G+KLQRL+GH++FVN+SF+Y SR  VP+L HV +++  NEV+AIVGLSGSG
Sbjct: 323 LPSDQFISKGLKLQRLLGHIEFVNVSFYYASRAMVPVLQHVNISVHPNEVLAIVGLSGSG 382

Query: 121 KSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC 180
           KST VNLLLRLYEP+DGQ+ IDGFPL +LD++WLRE+IGFVGQEP+L +MDI SNI YGC
Sbjct: 383 KSTIVNLLLRLYEPTDGQVLIDGFPLQELDVKWLRERIGFVGQEPRLFRMDISSNIRYGC 442

Query: 181 PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILL 240
            +D+K +D+EWAAKQAY H+FILSLP GY+TLVD+DLLSGGQKQRIAIARA+LRDP IL+
Sbjct: 443 TRDIKQKDVEWAAKQAYAHDFILSLPNGYKTLVDNDLLSGGQKQRIAIARALLRDPTILV 502

Query: 241 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEV 300
           LDEATSALD+ESEH VK VL ALR+D KTKRTVIVIAHRLSTI+A DRIVV+D GRI+E+
Sbjct: 503 LDEATSALDAESEHNVKNVLRALRSDLKTKRTVIVIAHRLSTIQAADRIVVMDGGRIVEM 562

Query: 301 GNHAELLHKGRLYAKLVKRQTESLT 325
           G+H ELL K  +YA+L +RQ +++ 
Sbjct: 563 GSHMELLLKDGIYARLTRRQADAVA 587

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470565|ref|XP_002272060.1| PREDICTED: ABC transporter B family member 26, chloroplastic-like [Vitis vinifera]

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 231/325 (71%), Positives = 288/325 (88%)

Query: 1   MAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDL 60
           +AVL+GGMSI+ G ++ EQLTK++LY EWLIY+TW + DNLSSL+QS+GA+EKVFQL+DL
Sbjct: 381 IAVLIGGMSILAGHITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDL 440

Query: 61  LPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSG 120
           LPS+QF+S+G+KLQRL+GH++FVN+SF+Y SR  VP+L HV +++  NEV+AIVGLSGSG
Sbjct: 441 LPSDQFISKGLKLQRLLGHIEFVNVSFYYASRAMVPVLQHVNISVHPNEVLAIVGLSGSG 500

Query: 121 KSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC 180
           KST VNLLLRLYEP+DGQ+ IDGFPL +LD++WLRE+IGFVGQEP+L +MDI SNI YGC
Sbjct: 501 KSTIVNLLLRLYEPTDGQVLIDGFPLQELDVKWLRERIGFVGQEPRLFRMDISSNIRYGC 560

Query: 181 PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILL 240
            +D+K +D+EWAAKQAY H+FILSLP GY+TLVD+DLLSGGQKQRIAIARA+LRDP IL+
Sbjct: 561 TRDIKQKDVEWAAKQAYAHDFILSLPNGYKTLVDNDLLSGGQKQRIAIARALLRDPTILV 620

Query: 241 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEV 300
           LDEATSALD+ESEH VK VL ALR+D KTKRTVIVIAHRLSTI+A DRIVV+D GRI+E+
Sbjct: 621 LDEATSALDAESEHNVKNVLRALRSDLKTKRTVIVIAHRLSTIQAADRIVVMDGGRIVEM 680

Query: 301 GNHAELLHKGRLYAKLVKRQTESLT 325
           G+H ELL K  +YA+L +RQ +++ 
Sbjct: 681 GSHMELLLKDGIYARLTRRQADAVA 705

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560910|ref|XP_002521468.1| abc transporter, putative [Ricinus communis] gi|223539367|gb|EEF40958.1| abc transporter, putative [Ricinus communis]

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 239/325 (73%), Positives = 280/325 (86%)

Query: 1   MAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDL 60
            AVLLGGMS+M G VS EQLTKY+LYCEWLIYATWR+VDN+SSLLQ+IGA+EKVFQL+ L
Sbjct: 358 FAVLLGGMSVMSGHVSTEQLTKYILYCEWLIYATWRVVDNISSLLQAIGASEKVFQLMQL 417

Query: 61  LPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSG 120
            PS+QFLS+G KL RLMG V FV+++FHYPSRPTVPIL H+ L +EANEVVA+VGLSGSG
Sbjct: 418 SPSSQFLSKGEKLPRLMGQVHFVDVTFHYPSRPTVPILEHIHLLLEANEVVALVGLSGSG 477

Query: 121 KSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC 180
           K+T VNLLLRLYEPS+GQIYIDGFPL +LD+R L+E IG+V QEPQL + DIKSNI YGC
Sbjct: 478 KTTLVNLLLRLYEPSNGQIYIDGFPLRELDMRCLKENIGYVEQEPQLFRTDIKSNITYGC 537

Query: 181 PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILL 240
            +DVK EDIE+AAK A  HEFI SLP GYETLVD++LLSGGQKQRIA ARAILR+PAIL+
Sbjct: 538 YRDVKMEDIEYAAKLADAHEFISSLPFGYETLVDNELLSGGQKQRIAFARAILRNPAILI 597

Query: 241 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEV 300
           LDEATSALDSESEHY+KG+L+A + D KTKRTVIVI HRLSTIK  DRI+V+D GR++EV
Sbjct: 598 LDEATSALDSESEHYIKGILYAFKTDEKTKRTVIVITHRLSTIKTADRIIVMDGGRVVEV 657

Query: 301 GNHAELLHKGRLYAKLVKRQTESLT 325
           GNH +L  +  LY++L+K Q   LT
Sbjct: 658 GNHVKLQLQDGLYSQLIKLQEGVLT 682

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574019|ref|XP_002527927.1| abc transporter, putative [Ricinus communis] gi|223532702|gb|EEF34484.1| abc transporter, putative [Ricinus communis]

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 225/325 (69%), Positives = 276/325 (84%), Gaps = 7/325 (2%)

Query: 1   MAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDL 60
           +AVL+GGMSI+ G ++ EQLTK++LY EWLIY+TW + DNLSSL+QS+GA+EKVFQL+DL
Sbjct: 367 IAVLVGGMSILAGHITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDL 426

Query: 61  LPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSG 120
           LP        +KLQRLMGH++F NISFHYPSR  VP+L HV + +   EV+AIVGLSGSG
Sbjct: 427 LPR-------LKLQRLMGHIEFANISFHYPSRANVPVLQHVNIVVHPGEVIAIVGLSGSG 479

Query: 121 KSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC 180
           KST VNLLLRLYEP++GQI IDGFPL +LDI+WLRE+IG+VGQEP+L +MDI SNI YGC
Sbjct: 480 KSTLVNLLLRLYEPTNGQILIDGFPLGELDIKWLRERIGYVGQEPKLFRMDISSNIRYGC 539

Query: 181 PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILL 240
            +DV  +D+EWAAKQAY H+FI +LP GYETLVDDDLLSGGQKQRIAIARAILRDP IL+
Sbjct: 540 TRDVNQKDVEWAAKQAYAHDFISALPNGYETLVDDDLLSGGQKQRIAIARAILRDPTILI 599

Query: 241 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEV 300
           LDEATSALD+ESEH +KGVL A+R+D  T+RTVIVIAHRLSTI+A DRIVV+  G+I+E+
Sbjct: 600 LDEATSALDAESEHNIKGVLRAVRSDLTTRRTVIVIAHRLSTIQAADRIVVMSGGQIVEM 659

Query: 301 GNHAELLHKGRLYAKLVKRQTESLT 325
           G+H ELLH+  LYA+L +RQ +++ 
Sbjct: 660 GSHRELLHQDGLYARLTRRQADAVA 684

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435410|ref|XP_004135488.1| PREDICTED: ABC transporter B family member 26, chloroplastic-like [Cucumis sativus]

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 224/325 (68%), Positives = 278/325 (85%)

Query: 1   MAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDL 60
           +AVLLGG  I+ G ++ EQLTK++LY EWLIY+TW + DNLSSL+QS+GA+EKVFQL+DL
Sbjct: 377 IAVLLGGTFILSGHITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDL 436

Query: 61  LPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSG 120
           LPS+QF+S+G KLQ+L GH++F+++SF Y SRPTV +L  V L++  NEVVAIVGLSGSG
Sbjct: 437 LPSDQFVSQGTKLQKLSGHIEFLDVSFSYSSRPTVSVLQRVSLSVHPNEVVAIVGLSGSG 496

Query: 121 KSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC 180
           KST VNLLLRLYEP++GQI IDG+PL +LDI W REKIG+VGQEP+L +MD+ SNI YGC
Sbjct: 497 KSTLVNLLLRLYEPTNGQILIDGYPLKELDIVWWREKIGYVGQEPKLFRMDVSSNIKYGC 556

Query: 181 PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILL 240
            +DV  ED+EWAAKQA+ H+FI SLP GY+TLVDDDLLSGGQKQRIAIARAILRDP +L+
Sbjct: 557 SRDVGQEDVEWAAKQAFAHDFIQSLPNGYQTLVDDDLLSGGQKQRIAIARAILRDPTLLI 616

Query: 241 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEV 300
           LDEATSALD+ESEH VKGVL A+RND K KRTV++IAHRLSTI+A DRIVV+D G+I+E+
Sbjct: 617 LDEATSALDAESEHNVKGVLRAVRNDSKMKRTVLIIAHRLSTIQAADRIVVMDGGQIVEM 676

Query: 301 GNHAELLHKGRLYAKLVKRQTESLT 325
           G H ELL K  LYA+L ++Q +++ 
Sbjct: 677 GTHRELLLKDGLYARLTRKQADAVA 701

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357485675|ref|XP_003613125.1| ABC transporter B family member [Medicago truncatula] gi|355514460|gb|AES96083.1| ABC transporter B family member [Medicago truncatula]

 Score =  473 bits (1216), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 223/335 (66%), Positives = 275/335 (82%), Gaps = 11/335 (3%)

Query: 1   MAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDL 60
           +AVL GGMSI+ G ++ E+LTK++LY EWLIY+TW + DN+S+L+QS+GA+EKVF L+DL
Sbjct: 377 IAVLFGGMSILSGHITAEKLTKFILYSEWLIYSTWWVGDNVSNLMQSVGASEKVFNLMDL 436

Query: 61  LPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSG 120
            PSNQF++EGVKLQ L GH++FVN+SFHYPSRPTV ++ HV   +  +EVVAIVGLSGSG
Sbjct: 437 SPSNQFITEGVKLQSLTGHIEFVNVSFHYPSRPTVHVVQHVNFVVNPSEVVAIVGLSGSG 496

Query: 121 KSTFVNLLLRLYEPSDGQ-----------IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ 169
           KST VNLLLRLYEP+ GQ           I IDG P  DLD+ W RE+IG+VGQEP+L +
Sbjct: 497 KSTLVNLLLRLYEPTSGQVLIPSILDSLPILIDGVPHKDLDVMWWRERIGYVGQEPKLFR 556

Query: 170 MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 229
           MDI SNI YGC +DV  EDIEWAAKQAY H+FI +LP GYETLVDDDLLSGGQKQRIAIA
Sbjct: 557 MDISSNIRYGCTRDVNQEDIEWAAKQAYAHDFISALPSGYETLVDDDLLSGGQKQRIAIA 616

Query: 230 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI 289
           RAILRDP IL+LDEATSALD+ESEH VKGVL ++R+D  T+R+VIVIAHRLSTI+A DRI
Sbjct: 617 RAILRDPKILILDEATSALDAESEHNVKGVLRSVRSDSSTRRSVIVIAHRLSTIQAADRI 676

Query: 290 VVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTESL 324
           +V+D G+I+E G+H ELL K  LYA+L ++Q +++
Sbjct: 677 IVMDKGQIVENGSHRELLLKDGLYARLTRKQADTM 711

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501630|ref|XP_003519627.1| PREDICTED: ABC transporter B family member 26, chloroplastic-like isoform 1 [Glycine max]

 Score =  473 bits (1216), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 223/325 (68%), Positives = 272/325 (83%), Gaps = 1/325 (0%)

Query: 1   MAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDL 60
           +AVL GGMSI+ G ++ E+LTK++LY EWLIY+TW + DN+S+L+QS+GA+EKVF L+DL
Sbjct: 378 IAVLFGGMSILAGHITAEKLTKFILYSEWLIYSTWWVGDNISNLMQSVGASEKVFHLMDL 437

Query: 61  LPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSG 120
           LPS+QF+  GV LQRL G ++F+N+SFHYPSRPTV ++ HV   +   EVVAIVGLSGSG
Sbjct: 438 LPSSQFIERGVTLQRLTGRIEFLNVSFHYPSRPTVSVVQHVNFVVYPGEVVAIVGLSGSG 497

Query: 121 KSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC 180
           KST VNLLLRLYEP++GQI ID  PL DLDI W RE++GFVGQEP+L +MDI SNI YGC
Sbjct: 498 KSTLVNLLLRLYEPTNGQILIDDIPLKDLDIMWWRERVGFVGQEPKLFRMDISSNIRYGC 557

Query: 181 PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILL 240
            +DVK EDIEWAAKQAY H FI +LP GYETLVDDDLLSGGQKQRIAIARA+LRDP IL+
Sbjct: 558 TRDVKQEDIEWAAKQAYAHNFISALPNGYETLVDDDLLSGGQKQRIAIARALLRDPKILI 617

Query: 241 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEV 300
           LDEATSALD+ESEH VKGVL ++R+D  T R+VIVIAHRLSTI+A DRIVV+D G IIE+
Sbjct: 618 LDEATSALDAESEHNVKGVLRSVRSDSAT-RSVIVIAHRLSTIQAADRIVVMDGGHIIEM 676

Query: 301 GNHAELLHKGRLYAKLVKRQTESLT 325
           G+H ELL K  LYA+L ++Q +++ 
Sbjct: 677 GSHRELLLKDGLYARLTRKQADAMA 701

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357485677|ref|XP_003613126.1| ABC transporter B family member [Medicago truncatula] gi|355514461|gb|AES96084.1| ABC transporter B family member [Medicago truncatula]

 Score =  472 bits (1215), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 223/335 (66%), Positives = 275/335 (82%), Gaps = 11/335 (3%)

Query: 1   MAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDL 60
           +AVL GGMSI+ G ++ E+LTK++LY EWLIY+TW + DN+S+L+QS+GA+EKVF L+DL
Sbjct: 202 IAVLFGGMSILSGHITAEKLTKFILYSEWLIYSTWWVGDNVSNLMQSVGASEKVFNLMDL 261

Query: 61  LPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSG 120
            PSNQF++EGVKLQ L GH++FVN+SFHYPSRPTV ++ HV   +  +EVVAIVGLSGSG
Sbjct: 262 SPSNQFITEGVKLQSLTGHIEFVNVSFHYPSRPTVHVVQHVNFVVNPSEVVAIVGLSGSG 321

Query: 121 KSTFVNLLLRLYEPSDGQ-----------IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ 169
           KST VNLLLRLYEP+ GQ           I IDG P  DLD+ W RE+IG+VGQEP+L +
Sbjct: 322 KSTLVNLLLRLYEPTSGQVLIPSILDSLPILIDGVPHKDLDVMWWRERIGYVGQEPKLFR 381

Query: 170 MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 229
           MDI SNI YGC +DV  EDIEWAAKQAY H+FI +LP GYETLVDDDLLSGGQKQRIAIA
Sbjct: 382 MDISSNIRYGCTRDVNQEDIEWAAKQAYAHDFISALPSGYETLVDDDLLSGGQKQRIAIA 441

Query: 230 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI 289
           RAILRDP IL+LDEATSALD+ESEH VKGVL ++R+D  T+R+VIVIAHRLSTI+A DRI
Sbjct: 442 RAILRDPKILILDEATSALDAESEHNVKGVLRSVRSDSSTRRSVIVIAHRLSTIQAADRI 501

Query: 290 VVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTESL 324
           +V+D G+I+E G+H ELL K  LYA+L ++Q +++
Sbjct: 502 IVMDKGQIVENGSHRELLLKDGLYARLTRKQADTM 536

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222619734|gb|EEE55866.1| hypothetical protein OsJ_04503 [Oryza sativa Japonica Group]

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 218/325 (67%), Positives = 277/325 (85%), Gaps = 1/325 (0%)

Query: 1   MAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDL 60
           +AVL+GG+SIM G+++ EQLTK++LY EWLI +TW + DN SSL+QS+GA+EKVF+L+DL
Sbjct: 232 IAVLIGGISIMAGKLTAEQLTKFILYAEWLILSTWWIGDNWSSLMQSVGASEKVFRLMDL 291

Query: 61  LPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSG 120
           LPS Q  SEG +LQ+L G +Q+ ++SF YPSRPTVPIL  + LT+  NEVVAIVGLSGSG
Sbjct: 292 LPSRQLSSEGHRLQKLEGRIQYADVSFSYPSRPTVPILGGLNLTLHPNEVVAIVGLSGSG 351

Query: 121 KSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC 180
           KST VNLLLRLYEP+DGQI +DG PL++LDIRW RE+IGFVGQEP+L +MDI SNI YGC
Sbjct: 352 KSTVVNLLLRLYEPTDGQILVDGVPLSELDIRWFRERIGFVGQEPRLFRMDISSNIRYGC 411

Query: 181 PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILL 240
           P++V NE++EWAAKQAY H+FI+SLP GY T+VDD LLSGGQKQR+AIARA+LRDP+IL+
Sbjct: 412 PREVSNEEVEWAAKQAYAHDFIMSLPDGYNTIVDDALLSGGQKQRVAIARALLRDPSILV 471

Query: 241 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEV 300
           LDEATSALD+ESEHYVK V+     D K +RTVI+IAHRLSTI+A DRI+V+++G I+E 
Sbjct: 472 LDEATSALDAESEHYVKNVITKFSTDPKARRTVIIIAHRLSTIQAADRIIVMENGNIVED 531

Query: 301 GNHAELLHK-GRLYAKLVKRQTESL 324
           GNH+EL++K   LY++L +RQ ++L
Sbjct: 532 GNHSELINKHDGLYSRLARRQNDAL 556

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	325
TAIR|locus:2026790	700	ABCB26 "ATP-binding cassette B	0.996	0.462	0.632	1.1e-108
DICTYBASE|DDB_G0279915	767	abcB4 "ABC transporter B famil	0.947	0.401	0.427	5.7e-59
UNIPROTKB|A8JBH0	560	CHLREDRAFT_121501 "Predicted p	0.972	0.564	0.417	5.7e-59
TAIR|locus:2057961	1286	ABCB1 "ATP-binding cassette B1	0.818	0.206	0.489	2.1e-57
ZFIN|ZDB-GENE-040525-2	710	abcb10 "ATP-binding cassette,	0.966	0.442	0.422	4.6e-57
WB|WBGene00001812	761	haf-2 [Caenorhabditis elegans	0.96	0.409	0.406	2e-56
UNIPROTKB|O02086	761	haf-2 "Protein HAF-2" [Caenorh	0.96	0.409	0.406	2e-56
ZFIN|ZDB-GENE-080204-52	1275	abcb4 "ATP-binding cassette, s	0.852	0.217	0.463	8.5e-56
UNIPROTKB|Q9NRK6	738	ABCB10 "ATP-binding cassette s	0.972	0.428	0.419	8.6e-56
UNIPROTKB|E1BL88	652	ABCB10 "Uncharacterized protei	0.972	0.484	0.419	1.1e-55

TAIR|locus:2026790 ABCB26 "ATP-binding cassette B26" [Arabidopsis thaliana (taxid:3702)]

 Score = 1074 (383.1 bits), Expect = 1.1e-108, P = 1.1e-108
 Identities = 205/324 (63%), Positives = 261/324 (80%)

Query:     1 MAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDL 60
             +AVL+GG+SI+ GQ++ EQLTK++LY EWLIYATW + DNLSSL+QS+GA+EKVFQ++DL
Sbjct:   376 IAVLVGGLSILAGQITAEQLTKFLLYSEWLIYATWWVGDNLSSLMQSVGASEKVFQMMDL 435

Query:    61 LPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSG 120
              PS+QF+S+G +LQRL GH++FV++SF YPSR  V ++ +V +++   EVVAIVGLSGSG
Sbjct:   436 KPSDQFISKGTRLQRLTGHIEFVDVSFSYPSRDEVAVVQNVNISVHPGEVVAIVGLSGSG 495

Query:   121 KSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC 180
             KST VNLLL+LYEP+ GQI +DG PL +LD++WLR++IG+VGQEP+L + DI SNI YGC
Sbjct:   496 KSTLVNLLLQLYEPTSGQILLDGVPLKELDVKWLRQRIGYVGQEPKLFRTDISSNIKYGC 555

Query:   181 PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILL 240
              +++  EDI  AAKQAY H+FI +LP GY T+VDDDLLSGGQKQRIAIARAILRDP IL+
Sbjct:   556 DRNISQEDIISAAKQAYAHDFITALPNGYNTIVDDDLLSGGQKQRIAIARAILRDPRILI 615

Query:   241 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXX 300
             LDEATSALD+ESEH VKGVL ++ ND  TKR+VIVIAHRLSTI+A               
Sbjct:   616 LDEATSALDAESEHNVKGVLRSIGNDSATKRSVIVIAHRLSTIQAADRIVAMDSGRVVEM 675

Query:   301 XNHAELLHKGRLYAKLVKRQTESL 324
              +H ELL K  LYA+L KRQ +++
Sbjct:   676 GSHKELLSKDGLYARLTKRQNDAV 699

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005215 "transporter activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0000302 "response to reactive oxygen species" evidence=RCA

GO:0010039 "response to iron ion" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

GO:0055072 "iron ion homeostasis" evidence=RCA

DICTYBASE|DDB_G0279915 abcB4 "ABC transporter B family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
 Identities = 136/318 (42%), Positives = 198/318 (62%)

Query:     6 GGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQ 65
             GG  +  G+++  QLT ++++   +  +  ++    + ++ ++G  +++ +LI+ +P   
Sbjct:   451 GGTLVSRGEMTGGQLTSFIIHTMNMQSSFSQLSILFTQIMSAMGGMQRITELINRVPLIN 510

Query:    66 FLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFV 125
               ++G KL+ L G ++F+N+ F YP+RP V +LN + LT++  +VVA+ G SG GKST  
Sbjct:   511 S-NQGFKLRELKGEIKFINVDFKYPTRPHVHVLNGLNLTLKPGQVVALAGSSGGGKSTIA 569

Query:   126 NLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVK 185
              LL R Y+ S+G I IDG+ +  L+ +WLR +IG V QEP L    I  N+ YG P   +
Sbjct:   570 GLLERFYDISNGDITIDGYSIKQLNAKWLRSRIGIVSQEPSLFATTILENLRYGNPNATE 629

Query:   186 NEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDE 243
             +E IE AAK A  H+FI + P GYET+V +    LSGGQKQRIAIARAIL++P I++LDE
Sbjct:   630 DEIIE-AAKLANAHQFISNFPKGYETIVGERGVQLSGGQKQRIAIARAILKNPQIIILDE 688

Query:   244 ATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNH 303
             ATSALDS+SE  V+  L  L       RT +VIAHRLST++                 NH
Sbjct:   689 ATSALDSQSELLVQTALDNLMKG----RTTLVIAHRLSTVQNADLIGVLSHGKIAEFGNH 744

Query:   304 AELL-HKGRLYAKLVKRQ 320
              EL+ HKG LY KLV+RQ
Sbjct:   745 NELMNHKG-LYYKLVQRQ 761

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS;IBA

GO:0006810 "transport" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0005215 "transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA;IBA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA;IBA

GO:0006200 "ATP catabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|A8JBH0 CHLREDRAFT_121501 "Predicted protein" [Chlamydomonas reinhardtii (taxid:3055)]

 Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
 Identities = 134/321 (41%), Positives = 197/321 (61%)

Query:     2 AVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLL 61
             A+++G   ++ G+++ EQLT +++Y E++ YA+  + D  + + +++GA+E+V  ++   
Sbjct:   243 ALVVGCGMVLTGKLTAEQLTNFIMYVEFVTYASLNVCDEFTEICEAVGASERVVAMLGAA 302

Query:    62 PSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGK 121
             P+ Q ++ G+      G +   ++ F YPSRP    LN V L+ E  ++ A+VGLSGSGK
Sbjct:   303 PAPQ-IAAGIIPATFSGRMSLEDVKFSYPSRPGNMALNGVSLSFEPGKLTALVGLSGSGK 361

Query:   122 STFVNLLLRLYEPSDGQIYIDG-FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC 180
             +T   LL RLY+PS G++ +D    + D D  W R++IG V QEP+L    I +NI YG 
Sbjct:   362 TTVCALLQRLYDPSGGRLVLDADLDVRDTDAAWYRQQIGVVPQEPRLFSRSIAANIAYGM 421

Query:   181 PKDVKNE-DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 239
                  +  DIE AA+ A  H+FI+SLP GYET V D LLSGGQKQR+A+ARA++R P +L
Sbjct:   422 EHAPPSAADIEEAARAANAHDFIMSLPQGYETQVTDKLLSGGQKQRLALARALIRKPKVL 481

Query:   240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXX 299
             +LDE +SALD+ESE  V   L   R      RTVIVIAHRLST++               
Sbjct:   482 VLDEFSSALDAESEAQVHVALD--RAMSARDRTVIVIAHRLSTVRHADCIVVMDKGKVHE 539

Query:   300 XXNHAELLHKGRLYAKLVKRQ 320
               +H ELL +  +Y +LV RQ
Sbjct:   540 MGSHHELLARRGIYWQLVCRQ 560

GO:0005886 "plasma membrane" evidence=IBA

GO:0015421 "oligopeptide-transporting ATPase activity" evidence=IBA

GO:0016021 "integral to membrane" evidence=IBA

GO:0055085 "transmembrane transport" evidence=IBA

TAIR|locus:2057961 ABCB1 "ATP-binding cassette B1" [Arabidopsis thaliana (taxid:3702)]

 Score = 601 (216.6 bits), Expect = 2.1e-57, P = 2.1e-57
 Identities = 135/276 (48%), Positives = 175/276 (63%)

Query:    50 ATEKVFQLIDLLPSNQFLSE-GVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEAN 108
             A  K+F++ID  P+ +  SE GV+L  + G V+  N+ F YPSRP V ILN+ CL++ A 
Sbjct:   337 AAAKIFRIIDHKPTIERNSESGVELDSVTGLVELKNVDFSYPSRPDVKILNNFCLSVPAG 396

Query:   109 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL 168
             + +A+VG SGSGKST V+L+ R Y+P+ GQ+ +DG  L  L +RWLR++IG V QEP L 
Sbjct:   397 KTIALVGSSGSGKSTVVSLIERFYDPNSGQVLLDGQDLKTLKLRWLRQQIGLVSQEPALF 456

Query:   169 QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRI 226
                IK NI+ G P D    +IE AA+ A  H FI+ LP G++T V +    LSGGQKQRI
Sbjct:   457 ATSIKENILLGRP-DADQVEIEEAARVANAHSFIIKLPDGFDTQVGERGLQLSGGQKQRI 515

Query:   227 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAX 286
             AIARA+L++PAILLLDEATSALDSESE  V+  L          RT ++IAHRLSTI+  
Sbjct:   516 AIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM----IGRTTLIIAHRLSTIRKA 571

Query:   287 XXXXXXXXXXXXXXXNHAELLHKGR--LYAKLVKRQ 320
                             H EL  KG   +YAKL+K Q
Sbjct:   572 DLVAVLQQGSVSEIGTHDELFSKGENGVYAKLIKMQ 607

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006200 "ATP catabolic process" evidence=IBA

GO:0006810 "transport" evidence=IEA

GO:0010540 "basipetal auxin transport" evidence=IBA

GO:0010541 "acropetal auxin transport" evidence=IBA

GO:0016021 "integral to membrane" evidence=IEA;IBA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS;IBA

GO:0055085 "transmembrane transport" evidence=IEA;IBA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0008361 "regulation of cell size" evidence=RCA;IMP

GO:0009637 "response to blue light" evidence=RCA;IMP

GO:0009639 "response to red or far red light" evidence=IMP

GO:0009640 "photomorphogenesis" evidence=RCA;IMP

GO:0009733 "response to auxin stimulus" evidence=RCA;IMP

GO:0009958 "positive gravitropism" evidence=IGI

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA;IMP

GO:0009926 "auxin polar transport" evidence=RCA;IMP;TAS

GO:0010329 "auxin efflux transmembrane transporter activity" evidence=IDA

GO:0009624 "response to nematode" evidence=IEP

GO:0048443 "stamen development" evidence=IGI;RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0007155 "cell adhesion" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0048364 "root development" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

ZFIN|ZDB-GENE-040525-2 abcb10 "ATP-binding cassette, sub-family B (MDR/TAP), member 10" [Danio rerio (taxid:7955)]

 Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
 Identities = 139/329 (42%), Positives = 202/329 (61%)

Query:     1 MAVLLGGMSIMIGQ-VSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLID 59
             ++VL  G  +M  + ++  QL+ +++Y  W+  +        S L++ +GA  ++++LID
Sbjct:   375 LSVLYKGGLLMASEAMTVGQLSSFLMYAFWVGISIAGFSSFYSELMKGLGAGTRLWELID 434

Query:    60 LLPSNQF-LSEGVKL--QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGL 116
               P  +F L+EG+ L  + L G ++F N+SF YP+R   PI   + L + A  V+A+VG 
Sbjct:   435 RKP--EFPLNEGLVLTSELLKGELEFRNVSFAYPTRKDSPIFQDLSLHVPAGSVLAVVGS 492

Query:   117 SGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI 176
             SGSGKS+ V+LLLRLY+P  G + +DG  + DL+  WLR  IG V QEP L    I  NI
Sbjct:   493 SGSGKSSLVSLLLRLYDPDSGIVSVDGHDIRDLNPYWLRSHIGTVSQEPVLFSCSIAENI 552

Query:   177 MYGCP--KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAI 232
              YG P    V  EDI  AA+ A  H+FI   P GY+T+V +   LLSGGQKQR+AIARA+
Sbjct:   553 AYGAPDPSQVTVEDIYRAAQIANAHDFIQEFPKGYDTVVGEKGVLLSGGQKQRVAIARAL 612

Query:   233 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXX 292
             L++P ILLLDEATSALD+E+E  V+  L  L +     RTV++IAHRLSTI++       
Sbjct:   613 LKNPKILLLDEATSALDAENEFLVQEALERLMDG----RTVLIIAHRLSTIQSADSVAVL 668

Query:   293 XXXXXXXXXNHAELLHKGR-LYAKLVKRQ 320
                      +H++LL   + L+ KL+++Q
Sbjct:   669 DQHRVMEIGSHSQLLANDQGLFRKLMEKQ 697

GO:0016887 "ATPase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

WB|WBGene00001812 haf-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
 Identities = 132/325 (40%), Positives = 199/325 (61%)

Query:     1 MAVLL-GGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLID 59
             +AVL  GG  +M G++  EQL  ++LY   L    + +   +S L++++GA+ KVF L++
Sbjct:   436 VAVLFYGGHLVMTGKMEKEQLITFLLYQMQLGENLYYLSYVMSGLMEAVGASRKVFDLMN 495

Query:    60 LLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGS 119
               P  QF  +G++   + G++ F ++ F YPSRP  P+L  + L+I++ E VA+VG SG 
Sbjct:   496 RKP--QFELDGMQRPFVNGNITFSHVGFTYPSRPNNPVLKDLTLSIKSGETVALVGPSGG 553

Query:   120 GKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYG 179
             GKS+ V+L+   YEP +G + +DG P+ D++  +  +K+  V QEP L    ++ NI+YG
Sbjct:   554 GKSSIVSLIEHFYEPDEGSVTLDGVPIKDINHVYYHQKVALVAQEPVLYNGSVRHNILYG 613

Query:   180 CPKDVKNED-IEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDP 236
             C  D   ED +  A+K A VH+F++ L  GY+T   +    +SGGQKQRIAIARA++R+P
Sbjct:   614 C--DFATEDDMLNASKMANVHDFVMELEKGYDTNCGEKGVQMSGGQKQRIAIARALVRNP 671

Query:   237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXX 296
             A+L+LDEATSALD+ESE  V+  L    + C  +RTVI++AHRLSTI+            
Sbjct:   672 AVLILDEATSALDTESEALVQQAL----SRCAQERTVIIVAHRLSTIEKANKIAVIVKGC 727

Query:   297 XXXXXNHAELL-HKGRLYAKLVKRQ 320
                   H EL+     +Y  LV RQ
Sbjct:   728 LVQMGTHTELMTDTDGMYYSLVSRQ 752

GO:0005524 "ATP binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0071688 "striated muscle myosin thick filament assembly" evidence=IMP

GO:0016246 "RNA interference" evidence=IMP

UNIPROTKB|O02086 haf-2 "Protein HAF-2" [Caenorhabditis elegans (taxid:6239)]

 Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
 Identities = 132/325 (40%), Positives = 199/325 (61%)

Query:     1 MAVLL-GGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLID 59
             +AVL  GG  +M G++  EQL  ++LY   L    + +   +S L++++GA+ KVF L++
Sbjct:   436 VAVLFYGGHLVMTGKMEKEQLITFLLYQMQLGENLYYLSYVMSGLMEAVGASRKVFDLMN 495

Query:    60 LLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGS 119
               P  QF  +G++   + G++ F ++ F YPSRP  P+L  + L+I++ E VA+VG SG 
Sbjct:   496 RKP--QFELDGMQRPFVNGNITFSHVGFTYPSRPNNPVLKDLTLSIKSGETVALVGPSGG 553

Query:   120 GKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYG 179
             GKS+ V+L+   YEP +G + +DG P+ D++  +  +K+  V QEP L    ++ NI+YG
Sbjct:   554 GKSSIVSLIEHFYEPDEGSVTLDGVPIKDINHVYYHQKVALVAQEPVLYNGSVRHNILYG 613

Query:   180 CPKDVKNED-IEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDP 236
             C  D   ED +  A+K A VH+F++ L  GY+T   +    +SGGQKQRIAIARA++R+P
Sbjct:   614 C--DFATEDDMLNASKMANVHDFVMELEKGYDTNCGEKGVQMSGGQKQRIAIARALVRNP 671

Query:   237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXX 296
             A+L+LDEATSALD+ESE  V+  L    + C  +RTVI++AHRLSTI+            
Sbjct:   672 AVLILDEATSALDTESEALVQQAL----SRCAQERTVIIVAHRLSTIEKANKIAVIVKGC 727

Query:   297 XXXXXNHAELL-HKGRLYAKLVKRQ 320
                   H EL+     +Y  LV RQ
Sbjct:   728 LVQMGTHTELMTDTDGMYYSLVSRQ 752

GO:0055085 "transmembrane transport" evidence=IBA

GO:0016021 "integral to membrane" evidence=IBA

GO:0015421 "oligopeptide-transporting ATPase activity" evidence=IBA

GO:0007041 "lysosomal transport" evidence=IBA

GO:0005886 "plasma membrane" evidence=IBA

GO:0005765 "lysosomal membrane" evidence=IBA

GO:0005743 "mitochondrial inner membrane" evidence=IRD

ZFIN|ZDB-GENE-080204-52 abcb4 "ATP-binding cassette, sub-family B (MDR/TAP), member 4" [Danio rerio (taxid:7955)]

 Score = 586 (211.3 bits), Expect = 8.5e-56, P = 8.5e-56
 Identities = 132/285 (46%), Positives = 174/285 (61%)

Query:    40 NLSSLLQSIGATEKVFQLIDLLPS-NQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPIL 98
             N+ +   + GA  KVFQ+ID  P  N F  EG KL  + G+++F NI F YPSR  V +L
Sbjct:   356 NIQTFSSARGAAHKVFQIIDHEPKINSFSEEGYKLDVVKGNIEFKNIHFRYPSRDDVKVL 415

Query:    99 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158
             N + L + + + +A+VG SG GKST + LL R Y+P +G + IDG  +  L++R LRE I
Sbjct:   416 NGMNLKVMSGQTIALVGSSGCGKSTTIQLLQRFYDPQEGSVSIDGHDIRSLNVRGLRELI 475

Query:   159 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--D 216
             G V QEP L    I  NI YG  +DV  ++IE AA++A  + FI+ LP  +ETLV D   
Sbjct:   476 GVVSQEPVLFATTIAENIRYG-RQDVTQDEIEQAAREANAYNFIMKLPDKFETLVGDRGT 534

Query:   217 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVI 276
              +SGGQKQRIAIARA++R+P ILLLDEATSALD+ESE  V+  L  +R      RT IV+
Sbjct:   535 QMSGGQKQRIAIARALVRNPKILLLDEATSALDAESETIVQAALDKVR----LGRTTIVV 590

Query:   277 AHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGRLYAKLVKRQT 321
             AHRLSTI+                  H EL+ +  +Y  LV  QT
Sbjct:   591 AHRLSTIRNADVIAGFQNGEIVELGTHDELMERKGIYHSLVNMQT 635

GO:0016887 "ATPase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q9NRK6 ABCB10 "ATP-binding cassette sub-family B member 10, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 138/329 (41%), Positives = 196/329 (59%)

Query:     1 MAVLL-GGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLID 59
             ++VL  GG+ +    ++  +L+ +++Y  W+  +   +    S L++ +GA  ++++L++
Sbjct:   411 LSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLE 470

Query:    60 LLPSNQFLSEGVKLQR--LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLS 117
               P   F +EGV L      G ++F N+ F YP+RP VPI     L+I +  V A+VG S
Sbjct:   471 REPKLPF-NEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPS 529

Query:   118 GSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIM 177
             GSGKST ++LLLRLY+P+ G I +DG  +  L+  WLR KIG V QEP L    I  NI 
Sbjct:   530 GSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIA 589

Query:   178 YGC--PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAIL 233
             YG   P  V  E+I+  A+ A    FI + P G+ T+V +   LLSGGQKQRIAIARA+L
Sbjct:   590 YGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALL 649

Query:   234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXX 293
             ++P ILLLDEATSALD+E+E+ V+  L  L +     RTV+VIAHRLSTIK         
Sbjct:   650 KNPKILLLDEATSALDAENEYLVQEALDRLMDG----RTVLVIAHRLSTIKNANMVAVLD 705

Query:   294 XXXXXXXXNHAELLHKGR-LYAKLVKRQT 321
                      H ELL K   +Y KL+ +Q+
Sbjct:   706 QGKITEYGKHEELLSKPNGIYRKLMNKQS 734

GO:0005524 "ATP binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IBA

GO:0005886 "plasma membrane" evidence=IRD

GO:0015421 "oligopeptide-transporting ATPase activity" evidence=IBA

GO:0055085 "transmembrane transport" evidence=IBA

GO:0032592 "integral to mitochondrial membrane" evidence=IDA

GO:0005215 "transporter activity" evidence=NAS

GO:0006810 "transport" evidence=NAS

UNIPROTKB|E1BL88 ABCB10 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
 Identities = 138/329 (41%), Positives = 192/329 (58%)

Query:     1 MAVLL-GGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLID 59
             ++VL  GG+ +    ++  +L+ +++Y  W+  +   +    S L++ +GA  ++++L++
Sbjct:   325 LSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGVSIGGLSSFYSELMKGLGAGSRLWELLE 384

Query:    60 LLPSNQFLSEGVKLQR--LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLS 117
               P   F +EG  L      G ++F N+ F YP+RP VPI     L+I +  V A+VG S
Sbjct:   385 REPELPF-NEGAVLNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPS 443

Query:   118 GSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIM 177
             G+GKST ++LLLRLY+P+ G I +DG  +  L+  WLR KIG V QEP L    I  NI 
Sbjct:   444 GAGKSTVISLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIA 503

Query:   178 YGC--PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAIL 233
             YG   P  V  E IE AA  A    FI + P G+ T+V +   LLSGGQKQRIAIARA+L
Sbjct:   504 YGADNPASVTAEQIEQAAAVANAAAFIQNFPQGFSTVVGEKGVLLSGGQKQRIAIARALL 563

Query:   234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXX 293
             ++P ILLLDEATSALD+E+EH V+  L  L       RTV +IAHRLSTIK         
Sbjct:   564 KNPKILLLDEATSALDAENEHLVQQALDRLMEG----RTVFIIAHRLSTIKNANVVAVLD 619

Query:   294 XXXXXXXXNHAELLHK-GRLYAKLVKRQT 321
                      H ELL K   +Y KL+ +Q+
Sbjct:   620 QGRIIECGKHEELLLKPDGMYRKLMNKQS 648

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0032592 "integral to mitochondrial membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.3	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00009463001 SubName- Full=Chromosome undetermined scaffold_235, whole genome shotgun sequence; (707 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	325
cd03249	238	cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett	1e-117
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	1e-100
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	1e-98
TIGR02204	576	TIGR02204, MsbA_rel, ABC transporter, permease/ATP	2e-96
TIGR00958	711	TIGR00958, 3a01208, Conjugate Transporter-2 (CT2)	1e-94
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	1e-92
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	5e-92
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	9e-90
TIGR02203	571	TIGR02203, MsbA_lipidA, lipid A export permease/AT	2e-86
PRK11176	582	PRK11176, PRK11176, lipid transporter ATP-binding/	2e-83
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	3e-81
cd03248	226	cd03248, ABCC_TAP, ATP-binding cassette domain of	2e-80
PRK13657	588	PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra	1e-79
cd03252	237	cd03252, ABCC_Hemolysin, ATP-binding cassette doma	1e-75
TIGR01846	694	TIGR01846, type_I_sec_HlyB, type I secretion syste	5e-75
COG5265	497	COG5265, ATM1, ABC-type transport system involved	5e-72
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	2e-71
COG4988	559	COG4988, CydD, ABC-type transport system involved	1e-67
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	3e-67
cd03244	221	cd03244, ABCC_MRP_domain2, ATP-binding cassette do	3e-67
TIGR03796	710	TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste	8e-65
TIGR03797	686	TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste	9e-64
TIGR01192	585	TIGR01192, chvA, glucan exporter ATP-binding prote	5e-62
COG4987	573	COG4987, CydC, ABC-type transport system involved	4e-58
PRK10789	569	PRK10789, PRK10789, putative multidrug transporter	5e-58
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	4e-57
PRK11174	588	PRK11174, PRK11174, cysteine/glutathione ABC trans	9e-56
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	1e-55
TIGR01193	708	TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t	8e-54
PRK10790	592	PRK10790, PRK10790, putative multidrug transporter	5e-52
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	6e-52
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	9e-51
TIGR01842	544	TIGR01842, type_I_sec_PrtD, type I secretion syste	1e-50
COG4618	580	COG4618, ArpD, ABC-type protease/lipase transport	3e-50
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	3e-48
COG1126	240	COG1126, GlnQ, ABC-type polar amino acid transport	1e-47
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	3e-47
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	5e-46
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	2e-45
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	2e-45
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	3e-45
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	4e-45
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	8e-45
TIGR02868	530	TIGR02868, CydC, thiol reductant ABC exporter, Cyd	1e-44
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	2e-44
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	3e-44
cd03262	213	cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai	1e-43
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	3e-43
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	4e-43
PRK13632	271	PRK13632, cbiO, cobalt transporter ATP-binding sub	2e-42
cd03369	207	cd03369, ABCC_NFT1, ATP-binding cassette domain 2	6e-42
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	4e-41
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	9e-41
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	1e-40
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	5e-40
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	5e-40
PRK14250	241	PRK14250, PRK14250, phosphate ABC transporter ATP-	1e-39
PRK13635	279	PRK13635, cbiO, cobalt transporter ATP-binding sub	2e-39
TIGR00957	1522	TIGR00957, MRP_assoc_pro, multi drug resistance-as	2e-39
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	1e-38
COG4608	268	COG4608, AppF, ABC-type oligopeptide transport sys	2e-38
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	4e-38
cd03294	269	cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette	4e-38
cd03250	204	cd03250, ABCC_MRP_domain1, ATP-binding cassette do	6e-38
TIGR00972	247	TIGR00972, 3a0107s01c2, phosphate ABC transporter,	1e-37
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	3e-37
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	4e-37
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	1e-36
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	3e-36
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	4e-36
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	5e-36
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	1e-35
PRK09493	240	PRK09493, glnQ, glutamine ABC transporter ATP-bind	2e-35
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	2e-35
COG1123	539	COG1123, COG1123, ATPase components of various ABC	3e-35
PLN03130	1622	PLN03130, PLN03130, ABC transporter C family membe	1e-34
COG1117	253	COG1117, PstB, ABC-type phosphate transport system	4e-34
PRK11153	343	PRK11153, metN, DL-methionine transporter ATP-bind	9e-34
COG4175	386	COG4175, ProV, ABC-type proline/glycine betaine tr	1e-33
PRK13650	279	PRK13650, cbiO, cobalt transporter ATP-binding sub	2e-33
cd03295	242	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas	2e-33
COG2884	223	COG2884, FtsE, Predicted ATPase involved in cell d	4e-33
TIGR03608	206	TIGR03608, L_ocin_972_ABC, putative bacteriocin ex	5e-33
PRK13637	287	PRK13637, cbiO, cobalt transporter ATP-binding sub	5e-33
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	6e-33
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	7e-33
PRK11264	250	PRK11264, PRK11264, putative amino-acid ABC transp	8e-33
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	4e-32
COG1123	539	COG1123, COG1123, ATPase components of various ABC	7e-32
cd03288	257	cd03288, ABCC_SUR2, ATP-binding cassette domain 2	8e-32
COG1118	345	COG1118, CysA, ABC-type sulfate/molybdate transpor	1e-31
TIGR02673	214	TIGR02673, FtsE, cell division ATP-binding protein	2e-31
COG4619	223	COG4619, COG4619, ABC-type uncharacterized transpo	4e-31
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	4e-31
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	4e-31
COG0444	316	COG0444, DppD, ABC-type dipeptide/oligopeptide/nic	4e-31
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	5e-31
TIGR00968	237	TIGR00968, 3a0106s01, sulfate ABC transporter, ATP	5e-31
cd03301	213	cd03301, ABC_MalK_N, The N-terminal ATPase domain	9e-31
cd03299	235	cd03299, ABC_ModC_like, ATP-binding cassette domai	9e-31
cd03298	211	cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin	1e-30
cd03292	214	cd03292, ABC_FtsE_transporter, ATP-binding cassett	2e-30
PRK10535	648	PRK10535, PRK10535, macrolide transporter ATP-bind	4e-30
cd03297	214	cd03297, ABC_ModC_molybdenum_transporter, ATP-bind	5e-30
cd03296	239	cd03296, ABC_CysA_sulfate_importer, ATP-binding ca	7e-30
PLN03232	1495	PLN03232, PLN03232, ABC transporter C family membe	9e-30
PRK13648	269	PRK13648, cbiO, cobalt transporter ATP-binding sub	9e-30
COG3840	231	COG3840, ThiQ, ABC-type thiamine transport system,	1e-29
PRK10744	260	PRK10744, pstB, phosphate transporter ATP-binding	6e-29
PRK14240	250	PRK14240, PRK14240, phosphate transporter ATP-bind	6e-29
pfam00005	119	pfam00005, ABC_tran, ABC transporter	8e-29
COG1127	263	COG1127, Ttg2A, ABC-type transport system involved	9e-29
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	1e-28
PRK13642	277	PRK13642, cbiO, cobalt transporter ATP-binding sub	3e-28
PRK10070	400	PRK10070, PRK10070, glycine betaine transporter AT	4e-28
COG4181	228	COG4181, COG4181, Predicted ABC-type transport sys	7e-28
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	7e-28
TIGR02142	354	TIGR02142, modC_ABC, molybdenum ABC transporter, A	8e-28
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	9e-28
cd03226	205	cd03226, ABC_cobalt_CbiO_domain2, Second domain of	1e-27
PRK14262	250	PRK14262, PRK14262, phosphate ABC transporter ATP-	2e-27
cd03224	222	cd03224, ABC_TM1139_LivF_branched, ATP-binding cas	2e-27
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	2e-27
PRK14244	251	PRK14244, PRK14244, phosphate ABC transporter ATP-	2e-27
PRK14236	272	PRK14236, PRK14236, phosphate transporter ATP-bind	2e-27
cd03219	236	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas	3e-27
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	9e-27
PRK13646	286	PRK13646, cbiO, cobalt transporter ATP-binding sub	1e-26
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	1e-26
PRK14242	253	PRK14242, PRK14242, phosphate transporter ATP-bind	1e-26
COG4148	352	COG4148, ModC, ABC-type molybdate transport system	1e-26
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	2e-26
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	2e-26
PRK14266	250	PRK14266, PRK14266, phosphate ABC transporter ATP-	3e-26
PRK14270	251	PRK14270, PRK14270, phosphate ABC transporter ATP-	3e-26
PRK13633	280	PRK13633, PRK13633, cobalt transporter ATP-binding	4e-26
TIGR02211	221	TIGR02211, LolD_lipo_ex, lipoprotein releasing sys	4e-26
PRK13640	282	PRK13640, cbiO, cobalt transporter ATP-binding sub	9e-26
COG4525	259	COG4525, TauB, ABC-type taurine transport system,	1e-25
TIGR01277	213	TIGR01277, thiQ, thiamine ABC transporter, ATP-bin	2e-25
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	3e-25
PRK14239	252	PRK14239, PRK14239, phosphate transporter ATP-bind	3e-25
TIGR02314	343	TIGR02314, ABC_MetN, D-methionine ABC transporter,	4e-25
COG1134	249	COG1134, TagH, ABC-type polysaccharide/polyol phos	8e-25
PRK14245	250	PRK14245, PRK14245, phosphate ABC transporter ATP-	8e-25
TIGR03005	252	TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB	4e-24
COG1119	257	COG1119, ModF, ABC-type molybdenum transport syste	5e-24
COG4598	256	COG4598, HisP, ABC-type histidine transport system	5e-24
PRK14269	246	PRK14269, PRK14269, phosphate ABC transporter ATP-	5e-24
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	6e-24
cd03215	182	cd03215, ABC_Carb_Monos_II, Second domain of the A	9e-24
PRK14260	259	PRK14260, PRK14260, phosphate ABC transporter ATP-	1e-23
PRK13641	287	PRK13641, cbiO, cobalt transporter ATP-binding sub	1e-23
cd03220	224	cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon	1e-23
PRK14237	267	PRK14237, PRK14237, phosphate transporter ATP-bind	1e-23
PRK14248	268	PRK14248, PRK14248, phosphate ABC transporter ATP-	2e-23
PRK10247	225	PRK10247, PRK10247, putative ABC transporter ATP-b	2e-23
PRK14253	249	PRK14253, PRK14253, phosphate ABC transporter ATP-	3e-23
PRK13631	320	PRK13631, cbiO, cobalt transporter ATP-binding sub	3e-23
COG0411	250	COG0411, LivG, ABC-type branched-chain amino acid	3e-23
PRK11124	242	PRK11124, artP, arginine transporter ATP-binding s	3e-23
TIGR02769	265	TIGR02769, nickel_nikE, nickel import ATP-binding	6e-23
PRK14254	285	PRK14254, PRK14254, phosphate ABC transporter ATP-	1e-22
COG4161	242	COG4161, ArtP, ABC-type arginine transport system,	1e-22
PRK14257	329	PRK14257, PRK14257, phosphate ABC transporter ATP-	2e-22
TIGR02982	220	TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi	2e-22
PRK14268	258	PRK14268, PRK14268, phosphate ABC transporter ATP-	2e-22
PRK14235	267	PRK14235, PRK14235, phosphate transporter ATP-bind	2e-22
PRK14255	252	PRK14255, PRK14255, phosphate ABC transporter ATP-	3e-22
cd03268	208	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c	3e-22
PRK13639	275	PRK13639, cbiO, cobalt transporter ATP-binding sub	6e-22
PRK13647	274	PRK13647, cbiO, cobalt transporter ATP-binding sub	7e-22
TIGR03265	353	TIGR03265, PhnT2, putative 2-aminoethylphosphonate	8e-22
PTZ00243	1560	PTZ00243, PTZ00243, ABC transporter; Provisional	8e-22
PRK14241	258	PRK14241, PRK14241, phosphate transporter ATP-bind	8e-22
PRK14258	261	PRK14258, PRK14258, phosphate ABC transporter ATP-	9e-22
PRK13651	305	PRK13651, PRK13651, cobalt transporter ATP-binding	1e-21
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	1e-21
PRK14251	251	PRK14251, PRK14251, phosphate ABC transporter ATP-	2e-21
cd03234	226	cd03234, ABCG_White, White pigment protein homolog	2e-21
PRK14274	259	PRK14274, PRK14274, phosphate ABC transporter ATP-	2e-21
PRK13645	289	PRK13645, cbiO, cobalt transporter ATP-binding sub	3e-21
TIGR01166	190	TIGR01166, cbiO, cobalt transport protein ATP-bind	3e-21
PRK10771	232	PRK10771, thiQ, thiamine transporter ATP-binding s	3e-21
PRK13644	274	PRK13644, cbiO, cobalt transporter ATP-binding sub	4e-21
PRK09452	375	PRK09452, potA, putrescine/spermidine ABC transpor	5e-21
PRK14264	305	PRK14264, PRK14264, phosphate ABC transporter ATP-	5e-21
PLN03130	1622	PLN03130, PLN03130, ABC transporter C family membe	6e-21
PRK13549	506	PRK13549, PRK13549, xylose transporter ATP-binding	6e-21
TIGR03258	362	TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans	8e-21
TIGR00957	1522	TIGR00957, MRP_assoc_pro, multi drug resistance-as	9e-21
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	9e-21
PRK11308	327	PRK11308, dppF, dipeptide transporter ATP-binding	1e-20
PRK13652	277	PRK13652, cbiO, cobalt transporter ATP-binding sub	1e-20
PLN03232	1495	PLN03232, PLN03232, ABC transporter C family membe	2e-20
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	2e-20
PRK14247	250	PRK14247, PRK14247, phosphate ABC transporter ATP-	2e-20
PRK11144	352	PRK11144, modC, molybdate transporter ATP-binding	2e-20
PRK14273	254	PRK14273, PRK14273, phosphate ABC transporter ATP-	2e-20
PRK14246	257	PRK14246, PRK14246, phosphate ABC transporter ATP-	3e-20
cd03218	232	cd03218, ABC_YhbG, ATP-binding cassette component	3e-20
PRK13636	283	PRK13636, cbiO, cobalt transporter ATP-binding sub	3e-20
PRK15112	267	PRK15112, PRK15112, antimicrobial peptide ABC syst	4e-20
COG1101	263	COG1101, PhnK, ABC-type uncharacterized transport	5e-20
PRK11000	369	PRK11000, PRK11000, maltose/maltodextrin transport	5e-20
PRK10619	257	PRK10619, PRK10619, histidine/lysine/arginine/orni	5e-20
cd03289	275	cd03289, ABCC_CFTR2, ATP-binding cassette domain 2	6e-20
cd03267	236	cd03267, ABC_NatA_like, ATP-binding cassette domai	6e-20
cd03217	200	cd03217, ABC_FeS_Assembly, ABC-type transport syst	6e-20
PRK14271	276	PRK14271, PRK14271, phosphate ABC transporter ATP-	7e-20
PRK14243	264	PRK14243, PRK14243, phosphate transporter ATP-bind	7e-20
TIGR01187	325	TIGR01187, potA, spermidine/putrescine ABC transpo	9e-20
cd03290	218	cd03290, ABCC_SUR1_N, ATP-binding cassette domain	9e-20
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	1e-19
PRK10419	268	PRK10419, nikE, nickel transporter ATP-binding pro	1e-19
PRK11247	257	PRK11247, ssuB, aliphatic sulfonates transport ATP	1e-19
COG0410	237	COG0410, LivF, ABC-type branched-chain amino acid	1e-19
PRK10851	353	PRK10851, PRK10851, sulfate/thiosulfate transporte	2e-19
PRK14267	253	PRK14267, PRK14267, phosphate ABC transporter ATP-	3e-19
PRK14261	253	PRK14261, PRK14261, phosphate ABC transporter ATP-	3e-19
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	3e-19
PRK11650	356	PRK11650, ugpC, glycerol-3-phosphate transporter A	3e-19
PRK11231	255	PRK11231, fecE, iron-dicitrate transporter ATP-bin	4e-19
PRK13649	280	PRK13649, cbiO, cobalt transporter ATP-binding sub	5e-19
PRK09536	402	PRK09536, btuD, corrinoid ABC transporter ATPase;	6e-19
PRK10575	265	PRK10575, PRK10575, iron-hydroxamate transporter A	6e-19
TIGR02324	224	TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys	8e-19
COG4178	604	COG4178, COG4178, ABC-type uncharacterized transpo	8e-19
PRK13634	290	PRK13634, cbiO, cobalt transporter ATP-binding sub	9e-19
PRK13536	340	PRK13536, PRK13536, nodulation factor exporter sub	1e-18
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	1e-18
PTZ00243	1560	PTZ00243, PTZ00243, ABC transporter; Provisional	2e-18
PRK14238	271	PRK14238, PRK14238, phosphate transporter ATP-bind	2e-18
COG0396	251	COG0396, sufC, Cysteine desulfurase activator ATPa	2e-18
PRK14275	286	PRK14275, PRK14275, phosphate ABC transporter ATP-	2e-18
COG4167	267	COG4167, SapF, ABC-type antimicrobial peptide tran	2e-18
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	2e-18
TIGR03873	256	TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra	2e-18
cd03291	282	cd03291, ABCC_CFTR1, ATP-binding cassette domain o	3e-18
COG4615	546	COG4615, PvdE, ABC-type siderophore export system,	3e-18
PRK14252	265	PRK14252, PRK14252, phosphate ABC transporter ATP-	6e-18
TIGR03410	230	TIGR03410, urea_trans_UrtE, urea ABC transporter,	6e-18
TIGR00955	617	TIGR00955, 3a01204, The Eye Pigment Precursor Tran	7e-18
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	8e-18
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	8e-18
PRK15079	331	PRK15079, PRK15079, oligopeptide ABC transporter A	9e-18
PRK11607	377	PRK11607, potG, putrescine transporter ATP-binding	1e-17
PRK11432	351	PRK11432, fbpC, ferric transporter ATP-binding sub	1e-17
PRK11248	255	PRK11248, tauB, taurine transporter ATP-binding su	1e-17
TIGR02770	230	TIGR02770, nickel_nikD, nickel import ATP-binding	1e-17
PRK14259	269	PRK14259, PRK14259, phosphate ABC transporter ATP-	2e-17
TIGR01288	303	TIGR01288, nodI, ATP-binding ABC transporter famil	3e-17
PRK14256	252	PRK14256, PRK14256, phosphate ABC transporter ATP-	3e-17
cd03237	246	cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin	4e-17
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	6e-17
COG1137	243	COG1137, YhbG, ABC-type (unclassified) transport s	8e-17
COG4133	209	COG4133, CcmA, ABC-type transport system involved	8e-17
PRK14249	251	PRK14249, PRK14249, phosphate ABC transporter ATP-	8e-17
COG4136	213	COG4136, COG4136, ABC-type uncharacterized transpo	1e-16
COG4778	235	COG4778, PhnL, ABC-type phosphonate transport syst	1e-16
cd03223	166	cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset	2e-16
PRK11629	233	PRK11629, lolD, lipoprotein transporter ATP-bindin	2e-16
PRK14272	252	PRK14272, PRK14272, phosphate ABC transporter ATP-	2e-16
COG4559	259	COG4559, COG4559, ABC-type hemin transport system,	3e-16
COG4586	325	COG4586, COG4586, ABC-type uncharacterized transpo	4e-16
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	5e-16
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	5e-16
COG4604	252	COG4604, CeuD, ABC-type enterochelin transport sys	5e-16
PRK10584	228	PRK10584, PRK10584, putative ABC transporter ATP-b	6e-16
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	7e-16
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	7e-16
PRK10908	222	PRK10908, PRK10908, cell division protein FtsE; Pr	7e-16
TIGR01184	230	TIGR01184, ntrCD, nitrate transport ATP-binding su	7e-16
PRK10522	547	PRK10522, PRK10522, multidrug transporter membrane	8e-16
PRK13643	288	PRK13643, cbiO, cobalt transporter ATP-binding sub	9e-16
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	1e-15
TIGR03415	382	TIGR03415, ABC_choXWV_ATP, choline ABC transporter	1e-15
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	1e-15
TIGR03522	301	TIGR03522, GldA_ABC_ATP, gliding motility-associat	3e-15
TIGR03740	223	TIGR03740, galliderm_ABC, gallidermin-class lantib	3e-15
PRK14263	261	PRK14263, PRK14263, phosphate ABC transporter ATP-	4e-15
PLN03211	659	PLN03211, PLN03211, ABC transporter G-25; Provisio	5e-15
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	6e-15
PRK14265	274	PRK14265, PRK14265, phosphate ABC transporter ATP-	7e-15
PRK11300	255	PRK11300, livG, leucine/isoleucine/valine transpor	1e-14
TIGR03771	223	TIGR03771, anch_rpt_ABC, anchored repeat-type ABC	2e-14
COG4152	300	COG4152, COG4152, ABC-type uncharacterized transpo	3e-14
PRK11701	258	PRK11701, phnK, phosphonate C-P lyase system prote	8e-14
TIGR02323	253	TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys	8e-14
COG4107	258	COG4107, PhnK, ABC-type phosphonate transport syst	8e-14
TIGR01194	555	TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo	1e-13
PRK13537	306	PRK13537, PRK13537, nodulation ABC transporter Nod	2e-13
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	2e-13
COG4674	249	COG4674, COG4674, Uncharacterized ABC-type transpo	3e-13
PRK09984	262	PRK09984, PRK09984, phosphonate/organophosphate es	3e-13
PRK13547	272	PRK13547, hmuV, hemin importer ATP-binding subunit	4e-13
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	5e-13
cd03233	202	cd03233, ABCG_PDR_domain1, First domain of the ple	5e-13
PRK11614	237	PRK11614, livF, leucine/isoleucine/valine transpor	7e-13
PRK10895	241	PRK10895, PRK10895, lipopolysaccharide ABC transpo	7e-13
TIGR03411	242	TIGR03411, urea_trans_UrtD, urea ABC transporter,	1e-12
PRK09544	251	PRK09544, znuC, high-affinity zinc transporter ATP	1e-12
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	1e-12
PRK13638	271	PRK13638, cbiO, cobalt transporter ATP-binding sub	2e-12
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	3e-12
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	5e-12
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	5e-12
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	7e-12
cd03231	201	cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog	8e-12
CHL00131	252	CHL00131, ycf16, sulfate ABC transporter protein;	9e-12
TIGR01978	243	TIGR01978, sufC, FeS assembly ATPase SufC	9e-12
PRK15056	272	PRK15056, PRK15056, manganese/iron transporter ATP	2e-11
PRK03695	248	PRK03695, PRK03695, vitamin B12-transporter ATPase	2e-11
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	2e-11
PRK13549	506	PRK13549, PRK13549, xylose transporter ATP-binding	4e-11
PRK13545	549	PRK13545, tagH, teichoic acids export protein ATP-	4e-11
cd03238	176	cd03238, ABC_UvrA, ATP-binding cassette domain of	6e-11
PRK13548	258	PRK13548, hmuV, hemin importer ATP-binding subunit	6e-11
PRK10418	254	PRK10418, nikD, nickel transporter ATP-binding pro	7e-11
PRK13539	207	PRK13539, PRK13539, cytochrome c biogenesis protei	1e-10
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	2e-10
smart00382	148	smart00382, AAA, ATPases associated with a variety	2e-10
PRK10253	265	PRK10253, PRK10253, iron-enterobactin transporter	2e-10
TIGR01189	198	TIGR01189, ccmA, heme ABC exporter, ATP-binding pr	2e-10
PRK13540	200	PRK13540, PRK13540, cytochrome c biogenesis protei	4e-10
PRK09473	330	PRK09473, oppD, oligopeptide transporter ATP-bindi	4e-10
TIGR00954	659	TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra	4e-10
PRK10982	491	PRK10982, PRK10982, galactose/methyl galaxtoside t	5e-10
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	5e-10
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	6e-10
PRK13543	214	PRK13543, PRK13543, cytochrome c biogenesis protei	1e-09
cd03222	177	cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett	2e-09
PRK09580	248	PRK09580, sufC, cysteine desulfurase ATPase compon	2e-09
PLN03073	718	PLN03073, PLN03073, ABC transporter F family; Prov	3e-09
PRK13548	258	PRK13548, hmuV, hemin importer ATP-binding subunit	4e-09
cd03232	192	cd03232, ABCG_PDR_domain2, Second domain of the pl	6e-09
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	1e-08
PRK13546	264	PRK13546, PRK13546, teichoic acids export protein	1e-08
PRK11022	326	PRK11022, dppD, dipeptide transporter ATP-binding	2e-08
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	3e-08
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	3e-08
COG2401	593	COG2401, COG2401, ABC-type ATPase fused to a predi	3e-08
COG4138	248	COG4138, BtuD, ABC-type cobalamin transport system	4e-08
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	4e-08
COG4170	330	COG4170, SapD, ABC-type antimicrobial peptide tran	5e-08
PRK15093	330	PRK15093, PRK15093, antimicrobial peptide ABC tran	5e-08
cd03236	255	cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin	6e-08
PRK13538	204	PRK13538, PRK13538, cytochrome c biogenesis protei	7e-08
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	2e-07
PRK11831	269	PRK11831, PRK11831, putative ABC transporter ATP-b	1e-06
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	1e-06
cd03271	261	cd03271, ABC_UvrA_II, ATP-binding cassette domain	3e-06
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	5e-06
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	5e-06
PRK10982	491	PRK10982, PRK10982, galactose/methyl galaxtoside t	5e-06
COG0178	935	COG0178, UvrA, Excinuclease ATPase subunit [DNA re	5e-06
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	2e-05
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	2e-05
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	2e-05
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	3e-05
PLN03073	718	PLN03073, PLN03073, ABC transporter F family; Prov	3e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-05
PRK13541	195	PRK13541, PRK13541, cytochrome c biogenesis protei	6e-05
cd03270	226	cd03270, ABC_UvrA_I, ATP-binding cassette domain I	7e-05
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	9e-05
TIGR00630	925	TIGR00630, uvra, excinuclease ABC, A subunit	1e-04
TIGR00630	925	TIGR00630, uvra, excinuclease ABC, A subunit	2e-04
PRK10938	490	PRK10938, PRK10938, putative molybdenum transport	2e-04
PRK00635	1809	PRK00635, PRK00635, excinuclease ABC subunit A; Pr	2e-04
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	3e-04
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	3e-04
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	3e-04
cd03227	162	cd03227, ABC_Class2, ATP-binding cassette domain o	3e-04
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	4e-04
cd03278	197	cd03278, ABC_SMC_barmotin, ATP-binding cassette do	5e-04
PRK00349	943	PRK00349, uvrA, excinuclease ABC subunit A; Review	9e-04
COG0178	935	COG0178, UvrA, Excinuclease ATPase subunit [DNA re	0.001

>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins

 Score =  337 bits (868), Expect = e-117
 Identities = 135/243 (55%), Positives = 172/243 (70%), Gaps = 7/243 (2%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           ++F N+SF YPSRP VPIL  + LTI   + VA+VG SG GKST V+LL R Y+P+ G+I
Sbjct: 1   IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60

Query: 140 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVH 199
            +DG  + DL++RWLR +IG V QEP L    I  NI YG P D  +E++E AAK+A +H
Sbjct: 61  LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKP-DATDEEVEEAAKKANIH 119

Query: 200 EFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 257
           +FI+SLP GY+TLV +    LSGGQKQRIAIARA+LR+P ILLLDEATSALD+ESE  V+
Sbjct: 120 DFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQ 179

Query: 258 GVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 317
             L          RT IVIAHRLSTI+  D I V+ +G+++E G H EL+ +  +YAKLV
Sbjct: 180 EALDRAMKG----RTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLV 235

Query: 318 KRQ 320
           K Q
Sbjct: 236 KAQ 238

MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score =  295 bits (757), Expect = e-100
 Identities = 123/239 (51%), Positives = 159/239 (66%), Gaps = 8/239 (3%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           V+F N++F YP     P+L  + L I A E VA+VG SGSGKST VNL+ R Y+   G+I
Sbjct: 1   VEFKNVTFRYPGDGP-PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59

Query: 140 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVH 199
            IDG  + D  +  LR +IG V Q+  L    +  NI YG P     E++E AA+ A  H
Sbjct: 60  LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRP-GATREEVEEAARAANAH 118

Query: 200 EFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 257
           EFI+ LP GY+T++ +    LSGGQ+QRIAIARA+L+DP IL+LDEATSALD+ESE  V+
Sbjct: 119 EFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQ 178

Query: 258 GVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKL 316
             L  L  +    RT  VIAHRLSTI+  DRIVV++DG+I+E G H ELL +G +YAKL
Sbjct: 179 AALERLMKN----RTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKL 233

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score =  301 bits (773), Expect = 1e-98
 Identities = 145/323 (44%), Positives = 207/323 (64%), Gaps = 11/323 (3%)

Query: 2   AVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLL 61
            + LGG  ++ G ++   L  ++LY   L+    ++ + +S L ++  A E++F+L+D  
Sbjct: 253 VLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDE- 311

Query: 62  PSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGK 121
              +       L+  +G ++F N+SF YP +   P+L  +  +IE  E VAIVG SGSGK
Sbjct: 312 -EPEVEDPPDPLKDTIGSIEFENVSFSYPGKK--PVLKDISFSIEPGEKVAIVGPSGSGK 368

Query: 122 STFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP 181
           ST + LLLRLY+P+ G+I IDG  + D+ +  LR++IG V Q+P L    I+ NI  G P
Sbjct: 369 STLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRP 428

Query: 182 KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAIL 239
            D  +E+IE A K A  HEFI +LP GY+T+V +    LSGGQ+QR+AIARA+LR+P IL
Sbjct: 429 -DATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPIL 487

Query: 240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIE 299
           +LDEATSALD+E+E  ++  L  L       RT ++IAHRLSTIK  DRI+V+D+GRI+E
Sbjct: 488 ILDEATSALDTETEALIQDALKKLLKG----RTTLIIAHRLSTIKNADRIIVLDNGRIVE 543

Query: 300 VGNHAELLHKGRLYAKLVKRQTE 322
            G H ELL KG LYA+L + Q  
Sbjct: 544 RGTHEELLAKGGLYARLYQAQGG 566

Length = 567

>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein

 Score =  296 bits (759), Expect = 2e-96
 Identities = 138/318 (43%), Positives = 195/318 (61%), Gaps = 8/318 (2%)

Query: 6   GGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQ 65
           G   ++ G++S   L ++V Y   +  +   + +    L ++ GA E++ +L+   P  +
Sbjct: 263 GAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIK 322

Query: 66  FLSEGVKL-QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTF 124
             +    L   L G ++F  ++F YP+RP  P L+ + LT+   E VA+VG SG+GKST 
Sbjct: 323 APAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTL 382

Query: 125 VNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDV 184
             LLLR Y+P  G+I +DG  L  LD   LR ++  V Q+P L    +  NI YG P D 
Sbjct: 383 FQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRP-DA 441

Query: 185 KNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLD 242
            +E++E AA+ A+ HEFI +LP GY+T + +    LSGGQ+QRIAIARAIL+D  ILLLD
Sbjct: 442 TDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLD 501

Query: 243 EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGN 302
           EATSALD+ESE  V+  L  L       RT ++IAHRL+T+   DRIVV+D GRI+  G 
Sbjct: 502 EATSALDAESEQLVQQALETLMKG----RTTLIIAHRLATVLKADRIVVMDQGRIVAQGT 557

Query: 303 HAELLHKGRLYAKLVKRQ 320
           HAEL+ KG LYA+L + Q
Sbjct: 558 HAELIAKGGLYARLARLQ 575

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576

>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein

 Score =  295 bits (756), Expect = 1e-94
 Identities = 139/320 (43%), Positives = 199/320 (62%), Gaps = 11/320 (3%)

Query: 1   MAVL-LGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLID 59
           + VL  GG  ++ G+VS   L  ++LY E L  A   +    S ++Q++GA+EKVF+ +D
Sbjct: 400 VLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLD 459

Query: 60  LLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGS 119
             P+   L+  +    L G ++F ++SF YP+RP VP+L  +  T+   EVVA+VG SGS
Sbjct: 460 RKPNIP-LTGTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGS 518

Query: 120 GKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYG 179
           GKST   LL  LY+P+ GQ+ +DG PL   D  +L  ++  VGQEP L    ++ NI YG
Sbjct: 519 GKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYG 578

Query: 180 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPA 237
              D  +E+I  AAK A  H+FI+  P GY+T V +    LSGGQKQRIAIARA++R P 
Sbjct: 579 L-TDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPR 637

Query: 238 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI 297
           +L+LDEATSALD+E E     +L   R   +  RTV++IAHRLST++  D+I+V+  G +
Sbjct: 638 VLILDEATSALDAECEQ----LLQESR--SRASRTVLLIAHRLSTVERADQILVLKKGSV 691

Query: 298 IEVGNHAELLHKGRLYAKLV 317
           +E+G H +L+     Y  LV
Sbjct: 692 VEMGTHKQLMEDQGCYKHLV 711

[Transport and binding proteins, Other]. Length = 711

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score =  275 bits (705), Expect = 1e-92
 Identities = 123/243 (50%), Positives = 160/243 (65%), Gaps = 9/243 (3%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           ++F N++F Y   P  P+L  V  TI A + VAIVG SGSGKST + LL R Y+ S G I
Sbjct: 1   IEFENVTFAYD--PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI 58

Query: 140 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVH 199
            IDG  + ++ +  LR  IG V Q+  L    I  NI YG P D  +E++  AAK A +H
Sbjct: 59  LIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRP-DATDEEVIEAAKAAQIH 117

Query: 200 EFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 257
           + I+  P GY+T+V +    LSGG+KQR+AIARAIL++P ILLLDEATSALD+ +E   +
Sbjct: 118 DKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTE---R 174

Query: 258 GVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 317
            +  ALR+  K  RT IVIAHRLSTI   D+I+V+ DGRI+E G H ELL KG LYA++ 
Sbjct: 175 EIQAALRDVSK-GRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEMW 233

Query: 318 KRQ 320
           K Q
Sbjct: 234 KAQ 236

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score =  288 bits (739), Expect = 5e-92
 Identities = 130/288 (45%), Positives = 182/288 (63%), Gaps = 8/288 (2%)

Query: 36  RMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTV 95
           R+    +   Q+  A E++  ++D  P  +     + L +L G ++F N+SF Y      
Sbjct: 428 RLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPDD-P 486

Query: 96  PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 155
           P+L  + L I   E VAIVG SGSGKST + LLL LY+P  G+I +DG  L D+D+  LR
Sbjct: 487 PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLR 546

Query: 156 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD 215
            ++G+V Q+P L    I+ NI  G P +  +E+I  AA+ A  HEFI +LP GY+T V +
Sbjct: 547 RQVGYVLQDPFLFSGSIRENIALGNP-EATDEEIIEAAQLAGAHEFIENLPMGYDTPVGE 605

Query: 216 D--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTV 273
               LSGGQ+QR+A+ARA+L  P ILLLDEATSALD E+E  +   L  +       RTV
Sbjct: 606 GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL----QGRTV 661

Query: 274 IVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQT 321
           I+IAHRLSTI++ DRI+V+D G+I+E G+H ELL +G LYA+L ++Q 
Sbjct: 662 IIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGGLYARLYQQQE 709

Length = 709

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score =  267 bits (685), Expect = 9e-90
 Identities = 109/235 (46%), Positives = 153/235 (65%), Gaps = 9/235 (3%)

Query: 78  GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 137
           G ++F N++F Y      P+L  +  +I+  E VAIVG +G+GK+T +NLL+R Y+P  G
Sbjct: 1   GEIEFENVNFSY--DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG 58

Query: 138 QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAY 197
           QI IDG  + D+  + LR  IG V Q+  L    I  NI  G P +  +E++  AAK+A 
Sbjct: 59  QILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRP-NATDEEVIEAAKEAG 117

Query: 198 VHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHY 255
            H+FI+ LP GY+T++ +    LS G++Q +AIARA+LRDP IL+LDEATS +D+E+E  
Sbjct: 118 AHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKL 177

Query: 256 VKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG 310
           ++  L  L       RT I+IAHRLSTIK  D+I+V+DDG+IIE G H ELL K 
Sbjct: 178 IQEALEKLMKG----RTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKK 228

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA

 Score =  270 bits (691), Expect = 2e-86
 Identities = 132/294 (44%), Positives = 179/294 (60%), Gaps = 10/294 (3%)

Query: 30  LIYATWRMVDNLSSLLQS-IGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFH 88
            +    + + N+++ +Q  + A E +F L+D  P     +    ++R  G V+F N++F 
Sbjct: 282 ALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKD--TGTRAIERARGDVEFRNVTFR 339

Query: 89  YPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD 148
           YP R   P L+ + L IE  E VA+VG SGSGKST VNL+ R YEP  GQI +DG  L D
Sbjct: 340 YPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLAD 398

Query: 149 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCG 208
             +  LR ++  V Q+  L    I +NI YG  +     +IE A   AY  +F+  LP G
Sbjct: 399 YTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLG 458

Query: 209 YETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 266
            +T + ++  LLSGGQ+QR+AIARA+L+D  IL+LDEATSALD+ESE  V+  L  L   
Sbjct: 459 LDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQG 518

Query: 267 CKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQ 320
               RT +VIAHRLSTI+  DRIVV+DDGRI+E G H ELL +  LYA+L   Q
Sbjct: 519 ----RTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNGLYAQLHNMQ 568

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571

>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional

 Score =  262 bits (671), Expect = 2e-83
 Identities = 124/285 (43%), Positives = 177/285 (62%), Gaps = 12/285 (4%)

Query: 40  NLSSLLQS-IGATEKVFQLIDLLPSNQFLSEGV-KLQRLMGHVQFVNISFHYPSRPTVPI 97
           N+++  Q  + A + +F ++DL    Q   EG   ++R  G ++F N++F YP +   P 
Sbjct: 303 NVNAQFQRGMAACQTLFAILDL---EQEKDEGKRVIERAKGDIEFRNVTFTYPGKEV-PA 358

Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 157
           L ++   I A + VA+VG SGSGKST  NLL R Y+  +G+I +DG  L D  +  LR +
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQ 418

Query: 158 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD- 216
           +  V Q   L    I +NI Y   +    E IE AA+ AY  +FI  +  G +T++ ++ 
Sbjct: 419 VALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENG 478

Query: 217 -LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIV 275
            LLSGGQ+QRIAIARA+LRD  IL+LDEATSALD+ESE  ++  L  L+ +    RT +V
Sbjct: 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKN----RTSLV 534

Query: 276 IAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQ 320
           IAHRLSTI+  D I+V++DG I+E G HAELL +  +YA+L K Q
Sbjct: 535 IAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNGVYAQLHKMQ 579

Length = 582

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score =  243 bits (624), Expect = 3e-81
 Identities = 106/217 (48%), Positives = 129/217 (59%), Gaps = 46/217 (21%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           ++F N+SF YP RP  P+L  V LTI+  E VAIVG SGSGKST + LLLRLY+P+ G+I
Sbjct: 1   IEFKNVSFSYPGRP-KPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59

Query: 140 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVH 199
            IDG  L DLD+  LR+ I +V Q+P L    I+ NI                       
Sbjct: 60  LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI----------------------- 96

Query: 200 EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV 259
                             LSGGQ+QRIAIARA+LRDP IL+LDEATSALD E+E  +   
Sbjct: 97  ------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEA 138

Query: 260 LHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 296
           L AL       +TVIVIAHRLSTI+  DRI+V+DDGR
Sbjct: 139 LRALAKG----KTVIVIAHRLSTIRDADRIIVLDDGR 171

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C

 Score =  243 bits (622), Expect = 2e-80
 Identities = 107/226 (47%), Positives = 146/226 (64%), Gaps = 7/226 (3%)

Query: 74  QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE 133
             L G V+F N++F YP+RP   +L  V  T+   EV A+VG SGSGKST V LL   Y+
Sbjct: 6   DHLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ 65

Query: 134 PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAA 193
           P  GQ+ +DG P++  + ++L  K+  VGQEP L    ++ NI YG       E ++ AA
Sbjct: 66  PQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQ-SCSFECVKEAA 124

Query: 194 KQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 251
           ++A+ H FI  L  GY+T V +    LSGGQKQR+AIARA++R+P +L+LDEATSALD+E
Sbjct: 125 QKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAE 184

Query: 252 SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI 297
           SE  V         D   +RTV+VIAHRLST++  D+I+V+D GRI
Sbjct: 185 SEQQV----QQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226

TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226

>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional

 Score =  252 bits (647), Expect = 1e-79
 Identities = 121/323 (37%), Positives = 192/323 (59%), Gaps = 10/323 (3%)

Query: 1   MAVLLGGMSIMI-GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLID 59
           +A+L+ G +++  GQ+   ++  +V +   LI    ++V  ++ +  +    E+ F++ D
Sbjct: 255 LAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVED 314

Query: 60  LLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGS 119
            +P  +     + L R+ G V+F ++SF Y +      +  V    +  + VAIVG +G+
Sbjct: 315 AVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDNSR--QGVEDVSFEAKPGQTVAIVGPTGA 372

Query: 120 GKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYG 179
           GKST +NLL R+++P  G+I IDG  +  +    LR  I  V Q+  L    I+ NI  G
Sbjct: 373 GKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVG 432

Query: 180 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPA 237
            P D  +E++  AA++A  H+FI   P GY+T+V +    LSGG++QR+AIARA+L+DP 
Sbjct: 433 RP-DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPP 491

Query: 238 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI 297
           IL+LDEATSALD E+E  VK  L  L       RT  +IAHRLST++  DRI+V D+GR+
Sbjct: 492 ILILDEATSALDVETEAKVKAALDELMKG----RTTFIIAHRLSTVRNADRILVFDNGRV 547

Query: 298 IEVGNHAELLHKGRLYAKLVKRQ 320
           +E G+  EL+ +G  +A L++ Q
Sbjct: 548 VESGSFDELVARGGRFAALLRAQ 570

Length = 588

>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C

 Score =  231 bits (592), Expect = 1e-75
 Identities = 117/244 (47%), Positives = 156/244 (63%), Gaps = 10/244 (4%)

Query: 80  VQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 138
           + F ++ F Y  +P  P IL+++ L I+  EVV IVG SGSGKST   L+ R Y P +G+
Sbjct: 1   ITFEHVRFRY--KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR 58

Query: 139 IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYV 198
           + +DG  L   D  WLR ++G V QE  L    I+ NI    P  +  E +  AAK A  
Sbjct: 59  VLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPG-MSMERVIEAAKLAGA 117

Query: 199 HEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 256
           H+FI  LP GY+T+V +    LSGGQ+QRIAIARA++ +P IL+ DEATSALD ESEH +
Sbjct: 118 HDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAI 177

Query: 257 KGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKL 316
              +H +   C   RTVI+IAHRLST+K  DRI+V++ GRI+E G+H ELL +  LYA L
Sbjct: 178 MRNMHDI---CA-GRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYL 233

Query: 317 VKRQ 320
            + Q
Sbjct: 234 YQLQ 237

The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237

>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family

 Score =  243 bits (622), Expect = 5e-75
 Identities = 133/327 (40%), Positives = 184/327 (56%), Gaps = 13/327 (3%)

Query: 1   MAVLL--GGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLI 58
            A+LL  G   ++ G +SP QL  + +    +     R+        Q+  A E++  ++
Sbjct: 376 FAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDIL 435

Query: 59  DLLPSNQFLSEGVKLQRLMGHVQFVNISFHY-PSRPTVPILNHVCLTIEANEVVAIVGLS 117
           +  P+    +    L  L G + F NI F Y P  P   +L+++ L I+  E + IVG S
Sbjct: 436 NS-PTEPRSAGLAALPELRGAITFENIRFRYAPDSP--EVLSNLNLDIKPGEFIGIVGPS 492

Query: 118 GSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIM 177
           GSGKST   LL RLY P  GQ+ +DG  L   D  WLR ++G V QE  L    I+ NI 
Sbjct: 493 GSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIA 552

Query: 178 YGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRD 235
              P     E +  AAK A  H+FI  LP GY T V +    LSGGQ+QRIAIARA++ +
Sbjct: 553 LCNPG-APFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGN 611

Query: 236 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDG 295
           P IL+ DEATSALD ESE  +   +  +   C+  RTVI+IAHRLST++A DRI+V++ G
Sbjct: 612 PRILIFDEATSALDYESEALIMRNMREI---CRG-RTVIIIAHRLSTVRACDRIIVLEKG 667

Query: 296 RIIEVGNHAELLHKGRLYAKLVKRQTE 322
           +I E G H ELL    LYA+L ++Q+ 
Sbjct: 668 QIAESGRHEELLALQGLYARLWQQQSG 694

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694

>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

 Score =  230 bits (589), Expect = 5e-72
 Identities = 128/294 (43%), Positives = 173/294 (58%), Gaps = 21/294 (7%)

Query: 37  MVDNLSSLLQSIG-ATEKVFQLI-------DLLPSNQFLSEGVKLQRLM----GHVQFVN 84
           ++  LS  L  +G +  ++ Q +       DLL     +S+      L     G V F+N
Sbjct: 208 LLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFIN 267

Query: 85  ISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF 144
           +SF Y  R   PILN +  TI   + VAIVG SG+GKST + LL R Y+ + G I IDG 
Sbjct: 268 VSFAYDPRR--PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQ 325

Query: 145 PLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILS 204
            + D+  + LR  IG V Q+  L    I  NI YG P D   E++  AA+ A +H+FI S
Sbjct: 326 DIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRP-DATAEEVGAAAEAAQIHDFIQS 384

Query: 205 LPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHA 262
           LP GY+T V +    LSGG+KQR+AIAR IL++P IL+LDEATSALD+ +E  ++  L  
Sbjct: 385 LPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALRE 444

Query: 263 LRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKL 316
           +       RT +VIAHRLSTI   D I+V+D+GRI+E G H ELL  G LYA++
Sbjct: 445 VSAG----RTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGGLYAEM 494

Length = 497

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score =  220 bits (563), Expect = 2e-71
 Identities = 99/223 (44%), Positives = 137/223 (61%), Gaps = 8/223 (3%)

Query: 78  GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 137
           G ++F N+SF YP++   P L++V LTI A E VAI+G  GSGKST + LL  LY+P+ G
Sbjct: 1   GRIEFRNVSFSYPNQEI-PALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59

Query: 138 QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAY 197
            + +DG  +  LD   LR  IG+V Q+  L    ++ NI  G P    +E I  AA+ A 
Sbjct: 60  SVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAP-LADDERILRAAELAG 118

Query: 198 VHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHY 255
           V +F+   P G +  + +    LSGGQ+Q +A+ARA+L DP ILLLDE TSA+D  SE  
Sbjct: 119 VTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEER 178

Query: 256 VKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRII 298
           +K  L  L  D    +T+I+I HR S +  VDRI+V+D GRI+
Sbjct: 179 LKERLRQLLGD----KTLIIITHRPSLLDLVDRIIVMDSGRIV 217

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score =  220 bits (564), Expect = 1e-67
 Identities = 106/281 (37%), Positives = 157/281 (55%), Gaps = 11/281 (3%)

Query: 45  LQSIGATEKVFQLIDL-LPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCL 103
                A +K+F L++  + +     +          +   N+SF YP       L+ + L
Sbjct: 285 AAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGKPA--LSDLNL 342

Query: 104 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQ 163
           TI+A ++ A+VG SG+GKST +NLLL    P+ G+I ++G  L DL     R++I +V Q
Sbjct: 343 TIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQ 402

Query: 164 EPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGG 221
            P L    I+ NI+   P D  +E+I  A  QA + EF+   P G +T++ +    LSGG
Sbjct: 403 NPYLFAGTIRENILLARP-DASDEEIIAALDQAGLLEFV-PKPDGLDTVIGEGGAGLSGG 460

Query: 222 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS 281
           Q QR+A+ARA+L   ++LLLDE T+ LD+E+E  +   L  L       +TV+VI HRL 
Sbjct: 461 QAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ----KTVLVITHRLE 516

Query: 282 TIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTE 322
                DRIVV+D+GR++E G H EL  K  LYA L+K+Q  
Sbjct: 517 DAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQQEG 557

Length = 559

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score =  222 bits (569), Expect = 3e-67
 Identities = 102/241 (42%), Positives = 148/241 (61%), Gaps = 8/241 (3%)

Query: 71  VKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 130
           +   RL G ++F N+SF YP + T P L++V LTI   E VAI+G  GSGKST + LLL 
Sbjct: 455 LHRPRLQGEIEFRNVSFAYPGQET-PALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLG 513

Query: 131 LYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIE 190
           LY+P++G + +DG  +  +D   LR  IG+V Q+P+L    ++ NI  G P    +E+I 
Sbjct: 514 LYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAP-YADDEEIL 572

Query: 191 WAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSAL 248
            AA+ A V EF+   P G +  + +    LSGGQ+Q +A+ARA+LRDP ILLLDE TSA+
Sbjct: 573 RAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAM 632

Query: 249 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLH 308
           D+ SE   K  L          +T++++ HR S +  VDRI+V+D+GRI+  G   ++L 
Sbjct: 633 DNRSEERFKDRLKRWLAG----KTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLE 688

Query: 309 K 309
            
Sbjct: 689 A 689

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein

 Score =  209 bits (535), Expect = 3e-67
 Identities = 88/229 (38%), Positives = 138/229 (60%), Gaps = 13/229 (5%)

Query: 78  GHVQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 136
           G ++F N+S  Y  RP   P+L ++  +I+  E V IVG +GSGKS+ +  L RL E S 
Sbjct: 1   GDIEFKNVSLRY--RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSS 58

Query: 137 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAA-KQ 195
           G I IDG  ++ + +  LR +I  + Q+P L    I+SN+    P    +++  W A ++
Sbjct: 59  GSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNL---DPFGEYSDEELWQALER 115

Query: 196 AYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 253
             + EF+ SLP G +T+V++    LS GQ+Q + +ARA+LR   IL+LDEAT+++D E++
Sbjct: 116 VGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETD 175

Query: 254 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGN 302
             ++  +     DC    TV+ IAHRL TI   DRI+V+D GR++E  +
Sbjct: 176 ALIQKTIREAFKDC----TVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220

The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221

>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein

 Score =  216 bits (553), Expect = 8e-65
 Identities = 99/249 (39%), Positives = 151/249 (60%), Gaps = 14/249 (5%)

Query: 74  QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE 133
            RL G+V+  NI+F Y S    P++ +  LT++  + VA+VG SGSGKST   L+  LY+
Sbjct: 472 PRLSGYVELRNITFGY-SPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ 530

Query: 134 PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAA 193
           P  G+I  DG P  ++    L   +  V Q+  L +  ++ N+    P  + + D+  A 
Sbjct: 531 PWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPT-IPDADLVRAC 589

Query: 194 KQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 251
           K A +H+ I S P GY+  + +    LSGGQ+QR+ IARA++R+P+IL+LDEATSALD E
Sbjct: 590 KDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPE 649

Query: 252 SEHYVKGVLHALRNDCKTKR--TVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK 309
           +E   K +   LR     +R  T I++AHRLSTI+  D I+V++ G++++ G H EL   
Sbjct: 650 TE---KIIDDNLR-----RRGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAV 701

Query: 310 GRLYAKLVK 318
           G  YA+L++
Sbjct: 702 GGAYARLIR 710

This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710

>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein

 Score =  213 bits (544), Expect = 9e-64
 Identities = 109/250 (43%), Positives = 151/250 (60%), Gaps = 15/250 (6%)

Query: 75  RLMGHVQFVNISFHY-PSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE 133
           +L G ++   ++F Y P  P   IL+ V L IE  E VAIVG SGSGKST + LLL    
Sbjct: 447 KLSGAIEVDRVTFRYRPDGP--LILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET 504

Query: 134 PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEW-A 192
           P  G ++ DG  L  LD++ +R ++G V Q  +L+   I  NI  G P  +   D  W A
Sbjct: 505 PESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTL---DEAWEA 561

Query: 193 AKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 250
           A+ A + E I ++P G  T++ +    LSGGQ+QR+ IARA++R P ILL DEATSALD+
Sbjct: 562 ARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDN 621

Query: 251 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG 310
            ++  V   L  L      K T IVIAHRLSTI+  DRI V+D GR+++ G + EL+ + 
Sbjct: 622 RTQAIVSESLERL------KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMARE 675

Query: 311 RLYAKLVKRQ 320
            L+A+L +RQ
Sbjct: 676 GLFAQLARRQ 685

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686

>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein

 Score =  206 bits (526), Expect = 5e-62
 Identities = 119/322 (36%), Positives = 192/322 (59%), Gaps = 10/322 (3%)

Query: 1   MAVLLGGMSIMI-GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLID 59
           M +L+ G  ++I G++S  ++  ++ +   LI    +M   ++ + ++    E  F L D
Sbjct: 255 MCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLED 314

Query: 60  LLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGS 119
            +   +  ++  +L  + G V+F +I+F + +  +   +  V    +A + VAIVG +G+
Sbjct: 315 SVFQREEPADAPELPNVKGAVEFRHITFEFAN--SSQGVFDVSFEAKAGQTVAIVGPTGA 372

Query: 120 GKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYG 179
           GK+T +NLL R+Y+P+ GQI IDG  +  +    LR+ I  V Q+  L    I+ NI  G
Sbjct: 373 GKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLG 432

Query: 180 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPA 237
             +   +E++  AAK A  H+FIL    GY+TLV +  + LSGG++QR+AIARAIL++  
Sbjct: 433 -REGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAP 491

Query: 238 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI 297
           IL+LDEATSALD E+E  VK  + ALR +    RT  +IAHRLST++  D ++ +D GR+
Sbjct: 492 ILVLDEATSALDVETEARVKNAIDALRKN----RTTFIIAHRLSTVRNADLVLFLDQGRL 547

Query: 298 IEVGNHAELLHKGRLYAKLVKR 319
           IE G+  EL+ K   + KL++R
Sbjct: 548 IEKGSFQELIQKDGRFYKLLRR 569

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score =  196 bits (500), Expect = 4e-58
 Identities = 93/276 (33%), Positives = 149/276 (53%), Gaps = 10/276 (3%)

Query: 46  QSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTI 105
           Q I +  ++  ++D  P   F  E  +       ++  N+SF YP + T   L +  LT+
Sbjct: 305 QVIASARRLNDILDQKPEVTFPDE--QTATTGQALELRNVSFTYPGQQT-KALKNFNLTL 361

Query: 106 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEP 165
              E VAI+G SGSGKST + LL   ++P  G I ++G  +  LD + LRE I  + Q  
Sbjct: 362 AQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRV 421

Query: 166 QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQK 223
            L    ++ N+    P D  +E++  A +Q  + + + S P G  T + +    LSGG++
Sbjct: 422 HLFSGTLRDNLRLANP-DASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGER 480

Query: 224 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 283
           +R+A+ARA+L D  + LLDE T  LD  +E  V  +L          +T++++ HRL  +
Sbjct: 481 RRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEG----KTLLMVTHRLRGL 536

Query: 284 KAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKR 319
           + +DRI+V+D+G+IIE G HAELL     Y +L + 
Sbjct: 537 ERMDRIIVLDNGKIIEEGTHAELLANNGRYKRLYQL 572

Length = 573

>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score =  195 bits (498), Expect = 5e-58
 Identities = 121/318 (38%), Positives = 176/318 (55%), Gaps = 24/318 (7%)

Query: 1   MAVLL--GGMSIMI--GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSI----GATE 52
           MA LL  GG S M+  G ++  QLT +V+Y   +I   W M+  L+ +   +     A  
Sbjct: 233 MANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMI---WPML-ALAWMFNIVERGSAAYS 288

Query: 53  KVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNI-SFHYPSRPTVPILNHVCLTIEANEVV 111
           ++  ++   P  +  SE V   R  G +  VNI  F YP     P L +V  T++  +++
Sbjct: 289 RIRAMLAEAPVVKDGSEPVPEGR--GELD-VNIRQFTYPQT-DHPALENVNFTLKPGQML 344

Query: 112 AIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMD 171
            I G +GSGKST ++L+ R ++ S+G I     PLT L +   R ++  V Q P L    
Sbjct: 345 GICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDT 404

Query: 172 IKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIA 229
           + +NI  G P D   ++IE  A+ A VH+ IL LP GY+T V +   +LSGGQKQRI+IA
Sbjct: 405 VANNIALGRP-DATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIA 463

Query: 230 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI 289
           RA+L +  IL+LD+A SA+D  +EH    +LH LR      RTVI+ AHRLS +     I
Sbjct: 464 RALLLNAEILILDDALSAVDGRTEHQ---ILHNLRQ-WGEGRTVIISAHRLSALTEASEI 519

Query: 290 VVIDDGRIIEVGNHAELL 307
           +V+  G I + GNH +L 
Sbjct: 520 LVMQHGHIAQRGNHDQLA 537

Length = 569

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score =  192 bits (490), Expect = 4e-57
 Identities = 91/215 (42%), Positives = 127/215 (59%), Gaps = 9/215 (4%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           ++F  +S  YP R   P L  V  T+   E VA+VG SG+GKST +NLLL   +P++G I
Sbjct: 322 LEFSGVSVAYPGRR--PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSI 379

Query: 140 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVH 199
            ++G PL D D    R++I +V Q P L    I  NI    P D  + +I  A ++A + 
Sbjct: 380 AVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARP-DASDAEIREALERAGLD 438

Query: 200 EFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 257
           EF+ +LP G +T + +    LSGGQ QR+A+ARA LRD  +LLLDE T+ LD+E+E  V 
Sbjct: 439 EFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVL 498

Query: 258 GVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 292
             L AL       RTV+++ HRL+     DRIVV+
Sbjct: 499 EALRALAQG----RTVLLVTHRLALAALADRIVVL 529

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score =  190 bits (484), Expect = 9e-56
 Identities = 84/224 (37%), Positives = 138/224 (61%), Gaps = 8/224 (3%)

Query: 103 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG 162
            T+ A + +A+VG SG+GK++ +N LL  + P  G + I+G  L +LD    R+ + +VG
Sbjct: 371 FTLPAGQRIALVGPSGAGKTSLLNALLG-FLPYQGSLKINGIELRELDPESWRKHLSWVG 429

Query: 163 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSG 220
           Q PQL    ++ N++ G P D  +E ++ A + A+V EF+  LP G +T + D    LS 
Sbjct: 430 QNPQLPHGTLRDNVLLGNP-DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSV 488

Query: 221 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL 280
           GQ QR+A+ARA+L+   +LLLDE T++LD+ SE     V+ AL N    ++T +++ H+L
Sbjct: 489 GQAQRLALARALLQPCQLLLLDEPTASLDAHSEQL---VMQAL-NAASRRQTTLMVTHQL 544

Query: 281 STIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTESL 324
             +   D+I V+ DG+I++ G++AEL   G L+A L+  + E +
Sbjct: 545 EDLAQWDQIWVMQDGQIVQQGDYAELSQAGGLFATLLAHRQEEI 588

Length = 588

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score =  189 bits (483), Expect = 1e-55
 Identities = 97/289 (33%), Positives = 149/289 (51%), Gaps = 30/289 (10%)

Query: 44  LLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCL 103
           L Q I +  ++ ++ +  P   F +           +   N+SF YP +P  P+L  + L
Sbjct: 304 LGQVIASARRINEITEQKPEVTFPTTS-TAAADQVSLTLNNVSFTYPDQPQ-PVLKGLSL 361

Query: 104 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQ 163
            I+A E VA++G +G GKST + LL R ++P  G+I ++G P+ D     LR+ I  V Q
Sbjct: 362 QIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQ 421

Query: 164 EPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD------- 216
              L    ++ N++   P       IE   +Q            G E L++DD       
Sbjct: 422 RVHLFSATLRDNLLLAAPNASDEALIE-VLQQV-----------GLEKLLEDDKGLNAWL 469

Query: 217 -----LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 271
                 LSGG+++R+ IARA+L D  +LLLDE T  LD+E+E     +L  L    + K 
Sbjct: 470 GEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQ---ILELLAEHAQNK- 525

Query: 272 TVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQ 320
           TV++I HRL+ ++  DRI V+D+G+IIE G H ELL +   Y +L +R 
Sbjct: 526 TVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQGRYYQLKQRL 574

Length = 574

>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter

 Score =  186 bits (475), Expect = 8e-54
 Identities = 97/247 (39%), Positives = 148/247 (59%), Gaps = 9/247 (3%)

Query: 73  LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 132
           L  L G +   ++S+ Y       IL+ + LTI+ N    IVG+SGSGKST   LL+  +
Sbjct: 467 LNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFF 524

Query: 133 EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWA 192
           +   G+I ++GF L D+D   LR+ I ++ QEP +    I  N++ G  ++V  ++I  A
Sbjct: 525 QARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAA 584

Query: 193 AKQAYVHEFILSLPCGYET--LVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 250
            + A + + I ++P GY+T    +   +SGGQKQRIA+ARA+L D  +L+LDE+TS LD+
Sbjct: 585 CEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDT 644

Query: 251 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG 310
            +E  +   L  L       +T+I +AHRLS  K  D+I+V+D G+IIE G+H ELL + 
Sbjct: 645 ITEKKIVNNLLNL-----QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRN 699

Query: 311 RLYAKLV 317
             YA L+
Sbjct: 700 GFYASLI 706

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708

>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score =  180 bits (458), Expect = 5e-52
 Identities = 102/275 (37%), Positives = 162/275 (58%), Gaps = 14/275 (5%)

Query: 42  SSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHV 101
           S L Q++ A E+VF+L+D  P  Q+ ++   LQ   G +   N+SF Y  R    +L ++
Sbjct: 306 SMLQQAVVAGERVFELMDG-PRQQYGNDDRPLQS--GRIDIDNVSFAY--RDDNLVLQNI 360

Query: 102 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 161
            L++ +   VA+VG +GSGKST  +LL+  Y  ++G+I +DG PL+ L    LR+ +  V
Sbjct: 361 NLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMV 420

Query: 162 GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLS 219
            Q+P +L     +N+  G  +D+  E +  A +   + E   SLP G  T + +  + LS
Sbjct: 421 QQDPVVLADTFLANVTLG--RDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLS 478

Query: 220 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHR 279
            GQKQ +A+AR +++ P IL+LDEAT+ +DS +E  ++  L A+R       T++VIAHR
Sbjct: 479 VGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE----HTTLVVIAHR 534

Query: 280 LSTIKAVDRIVVIDDGRIIEVGNHAELL-HKGRLY 313
           LSTI   D I+V+  G+ +E G H +LL  +GR +
Sbjct: 535 LSTIVEADTILVLHRGQAVEQGTHQQLLAAQGRYW 569

Length = 592

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score =  170 bits (433), Expect = 6e-52
 Identities = 82/226 (36%), Positives = 121/226 (53%), Gaps = 25/226 (11%)

Query: 81  QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY 140
           +  N+SF YP     P L+ + LTI+  E V IVG +GSGKST + LL  L  P+ G++ 
Sbjct: 1   ELKNLSFSYPDGAR-PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59

Query: 141 IDGFPLTDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGC-----PKDVKNEDIEWAA 193
           +DG  LT L ++ LR K+G V Q P  Q     ++  + +G      P++   E +E A 
Sbjct: 60  VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEAL 119

Query: 194 KQAYVHEFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSE 251
           +             G E L D     LSGGQKQR+AIA  +  DP ILLLDE T+ LD  
Sbjct: 120 EL-----------VGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPA 168

Query: 252 SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGR 296
               +  +L  L+ + K   T+I++ H L  +  + DR++V++DG+
Sbjct: 169 GRRELLELLKKLKAEGK---TIIIVTHDLDLLLELADRVIVLEDGK 211

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score =  180 bits (458), Expect = 9e-51
 Identities = 110/303 (36%), Positives = 158/303 (52%), Gaps = 65/303 (21%)

Query: 78   GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY----- 132
            G ++ ++++F Y SRP VPI   +  + ++ +  AIVG +GSGKST ++LL+R Y     
Sbjct: 1164 GKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKND 1223

Query: 133  ---------------------------------------EPSDGQ----------IYIDG 143
                                                   E   G+          I +DG
Sbjct: 1224 HHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDG 1283

Query: 144  FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFIL 203
              + D +++ LR     V QEP L  M I  NI +G  +D   ED++ A K A + EFI 
Sbjct: 1284 VDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFG-KEDATREDVKRACKFAAIDEFIE 1342

Query: 204  SLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLH 261
            SLP  Y+T V      LSGGQKQRIAIARA+LR+P ILLLDEATS+LDS SE  ++  + 
Sbjct: 1343 SLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIV 1402

Query: 262  ALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD----GRIIEV-GNHAELLH-KGRLYAK 315
             +++  K  +T+I IAHR+++IK  D+IVV ++    G  ++  G H ELL  +  +Y K
Sbjct: 1403 DIKD--KADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKK 1460

Query: 316  LVK 318
             VK
Sbjct: 1461 YVK 1463

Length = 1466

>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family

 Score =  175 bits (447), Expect = 1e-50
 Identities = 96/279 (34%), Positives = 146/279 (52%), Gaps = 16/279 (5%)

Query: 38  VDNLSSLLQSIGATEKVF----QLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRP 93
           +D      +      + +    +L+   PS       + L    GH+   N++   P   
Sbjct: 274 IDGAIGGWKQFSGARQAYKRLNELLANYPSR---DPAMPLPEPEGHLSVENVTI-VPPGG 329

Query: 94  TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW 153
             P L  +  +++A E +AI+G SGSGKST   L++ ++ P+ G + +DG  L   D   
Sbjct: 330 KKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRET 389

Query: 154 LREKIGFVGQEPQLLQMDIKSNIM-YGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETL 212
             + IG++ Q+ +L    +  NI  +G  ++   E I  AAK A VHE IL LP GY+T+
Sbjct: 390 FGKHIGYLPQDVELFPGTVAENIARFG--ENADPEKIIEAAKLAGVHELILRLPDGYDTV 447

Query: 213 VDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTK 270
           +      LSGGQ+QRIA+ARA+  DP +++LDE  S LD E E  +   + AL+      
Sbjct: 448 IGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALK---ARG 504

Query: 271 RTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK 309
            TV+VI HR S +  VD+I+V+ DGRI   G   E+L K
Sbjct: 505 ITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLAK 543

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544

>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

 Score =  175 bits (446), Expect = 3e-50
 Identities = 98/278 (35%), Positives = 153/278 (55%), Gaps = 18/278 (6%)

Query: 38  VDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPI 97
           + N    + +  + +++ +L+  LP+    +E + L    G +    ++   P +   PI
Sbjct: 296 IANWKQFVAARQSYKRLNELLAELPAA---AERMPLPAPQGALSVERLTAAPPGQKK-PI 351

Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 157
           L  +   ++A E + I+G SGSGKST   LL+ ++ P+ G + +DG    DL  +W RE+
Sbjct: 352 LKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDG---ADLR-QWDREQ 407

Query: 158 ----IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLV 213
               IG++ Q+ +L    I  NI      +   E +  AA+ A VHE IL LP GY+T +
Sbjct: 408 LGRHIGYLPQDVELFDGTIAENIARFGE-EADPEKVIEAARLAGVHELILRLPQGYDTRI 466

Query: 214 DDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 271
            +    LSGGQ+QRIA+ARA+  DP +++LDE  S LDSE E  +   + A +       
Sbjct: 467 GEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKAR---GG 523

Query: 272 TVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK 309
           TV+VIAHR S + +VD+I+V+ DGRI   G   E+L K
Sbjct: 524 TVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561

Length = 580

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score =  159 bits (404), Expect = 3e-48
 Identities = 73/214 (34%), Positives = 106/214 (49%), Gaps = 45/214 (21%)

Query: 84  NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 143
           N+SF YP     P+L +V  +IE  E +AI+G SGSGKST   L+L L  P+ G++ +DG
Sbjct: 5   NVSFRYPGAEP-PVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDG 63

Query: 144 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFIL 203
             ++  D   L + +G++ Q+ +L    I  NI                           
Sbjct: 64  ADISQWDPNELGDHVGYLPQDDELFSGSIAENI--------------------------- 96

Query: 204 SLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 263
                         LSGGQ+QR+ +ARA+  +P IL+LDE  S LD E E     +  A+
Sbjct: 97  --------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGER---ALNQAI 139

Query: 264 RNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI 297
                   T IVIAHR  T+ + DRI+V++DGR+
Sbjct: 140 AALKAAGATRIVIAHRPETLASADRILVLEDGRV 173

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

 Score =  159 bits (406), Expect = 1e-47
 Identities = 79/227 (34%), Positives = 113/227 (49%), Gaps = 31/227 (13%)

Query: 97  ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD-LDIRWLR 155
           +L  + L++E  EVV I+G SGSGKST +  L  L EP  G I +DG  + D  DI  LR
Sbjct: 17  VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLR 76

Query: 156 EKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQA-----------YVHEFIL 203
            K+G V Q+  L   + +  N+    P  VK      A ++A               +  
Sbjct: 77  RKVGMVFQQFNLFPHLTVLENVTLA-PVKVKKLSKAEAREKALELLEKVGLADKADAY-- 133

Query: 204 SLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 263
             P           LSGGQ+QR+AIARA+  DP ++L DE TSALD E    V  VL  +
Sbjct: 134 --P---------AQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPEL---VGEVLDVM 179

Query: 264 RNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHK 309
           ++  +   T+I++ H +   + V DR++ +D G+IIE G   E    
Sbjct: 180 KDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226

Length = 240

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score =  160 bits (408), Expect = 3e-47
 Identities = 72/239 (30%), Positives = 123/239 (51%), Gaps = 21/239 (8%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           ++  N++  Y        L+ V   +E  E+  ++G +G+GK+T + +L  L +P+ G+I
Sbjct: 5   IEVRNLTKKY--GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62

Query: 140 YIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNI-----MYGCPKDVKNEDIEWAA 193
            + G+ +   +   +R +IG+V QEP L  ++ ++ N+     +YG  K+   E IE   
Sbjct: 63  LVLGYDVVK-EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELL 121

Query: 194 KQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 253
           +          L       V    LSGG KQR++IA A+L DP +L+LDE TS LD ES 
Sbjct: 122 EL-------FGLEDKANKKVRT--LSGGMKQRLSIALALLHDPELLILDEPTSGLDPESR 172

Query: 254 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHKGR 311
             +  +L  L  +     T+++  H L   + + DR+++++DG+II  G   EL  K  
Sbjct: 173 REIWELLRELAKE--GGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFG 229

Length = 293

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  155 bits (395), Expect = 5e-46
 Identities = 87/245 (35%), Positives = 129/245 (52%), Gaps = 22/245 (8%)

Query: 77  MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 136
           +  ++  N+SF YP R     L  V L IE  E V ++G +GSGKST + LL  L +P+ 
Sbjct: 1   LRMIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTS 58

Query: 137 GQIYIDGFPLTD-LDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCPKDVKNEDIEWAA 193
           G++ +DG   +    +  LR+K+G V Q P  QL    ++  + +G      N  +    
Sbjct: 59  GEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLE----NLGLPREE 114

Query: 194 KQAYVHEFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSE 251
            +  V E  L L  G E L+D     LSGGQKQR+AIA  +   P ILLLDE T+ LD +
Sbjct: 115 IEERVAE-ALEL-VGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPK 172

Query: 252 SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRII------EVGNHA 304
               +  +L  L+ +    +T+I++ H L  +    DR+VV+DDG+I+      E+ N A
Sbjct: 173 GRRELLELLKKLKEE--GGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230

Query: 305 ELLHK 309
           ELL  
Sbjct: 231 ELLLA 235

Length = 235

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score =  152 bits (386), Expect = 2e-45
 Identities = 79/221 (35%), Positives = 112/221 (50%), Gaps = 47/221 (21%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           ++  N+S  Y       +LN V L IEA E+VA++G SGSGKST +  +  L EP  G I
Sbjct: 1   LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI 57

Query: 140 YIDGFPLTDLD--IRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQA 196
            IDG  LTDL+  +  LR +IG V Q+  L   + +  NI  G                 
Sbjct: 58  LIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG----------------- 100

Query: 197 YVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 256
                                LSGGQ+QR+A+ARA+  DP +LLLDE TSALD  +   V
Sbjct: 101 ---------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREV 139

Query: 257 KGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGR 296
           + +L +L+   +   TV+++ H L     + DR+VV+ DG+
Sbjct: 140 RALLKSLQA--QLGITVVLVTHDLDEAARLADRVVVLRDGK 178

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score =  153 bits (389), Expect = 2e-45
 Identities = 84/234 (35%), Positives = 120/234 (51%), Gaps = 19/234 (8%)

Query: 80  VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 138
           ++  N+S  Y      V  L  V L IEA E VAIVG SGSGKST +NLL  L +P+ G+
Sbjct: 2   IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61

Query: 139 IYIDGFPLTDLDIRWL----REKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVKNEDIEWA 192
           + I+G  LT L  + L    R+KIGFV Q   LL  + +  N+              + A
Sbjct: 62  VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRA 121

Query: 193 AKQAYVHEFILSLPCGYETLVDDDL---LSGGQKQRIAIARAILRDPAILLLDEATSALD 249
           A++       L    G E  +       LSGGQ+QR+AIARA++ +P I+L DE T  LD
Sbjct: 122 AEE-------LLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLD 174

Query: 250 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNH 303
           S++   V  +L  L    +  +T+I++ H     K  DR++ + DG+I E    
Sbjct: 175 SKTAKEVLELLRELNK--ERGKTIIMVTHDPELAKYADRVIELKDGKIEEEELD 226

Length = 226

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score =  153 bits (388), Expect = 3e-45
 Identities = 81/237 (34%), Positives = 111/237 (46%), Gaps = 38/237 (16%)

Query: 80  VQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 138
           ++  N+S  Y      V  L  V L+IE  E VAIVG SGSGKST +N+L  L  P+ G+
Sbjct: 1   IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60

Query: 139 IYIDGFPLTDLD----IRWLREKIGFVGQEPQLLQ-MDIKSNIMYGC--PKDVKNEDIEW 191
           + +DG  ++ L       + R  IGFV Q   LL  +    N+          K E  E 
Sbjct: 61  VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRER 120

Query: 192 AAK-----------QAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILL 240
           A +             Y  E                 LSGGQ+QR+AIARA+  DP I+L
Sbjct: 121 AEELLERVGLGDRLNHYPSE-----------------LSGGQQQRVAIARALANDPKIIL 163

Query: 241 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI 297
            DE T  LDSE+   V  +L  L  +  T  T++V+ H     +  DRI+ + DG+I
Sbjct: 164 ADEPTGNLDSETGKEVMELLRELNKEAGT--TIVVVTHDPELAEYADRIIELRDGKI 218

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score =  153 bits (388), Expect = 4e-45
 Identities = 73/223 (32%), Positives = 117/223 (52%), Gaps = 33/223 (14%)

Query: 97  ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTDLDI 151
            L  + L I   E+ A++G SG GKST + LL RL +     P +G++ +DG  + DLD+
Sbjct: 15  ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDV 74

Query: 152 R--WLREKIGFVGQEPQLLQMDIKSNIMYGC------PKDVKNEDIEWAAKQAYVHEFIL 203
               LR ++G V Q+P      I  N+ YG        K+  +E +E A ++A + +   
Sbjct: 75  DVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWD--- 131

Query: 204 SLPCGYETLVDDDL----LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV 259
                    V D L    LSGGQ+QR+ +ARA+  +P +LLLDE TSALD  S   ++ +
Sbjct: 132 --------EVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEEL 183

Query: 260 LHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 301
           +  L+ +     T++++ H +     V DR   + +GR++E G
Sbjct: 184 IAELKKE----YTIVIVTHNMQQAARVADRTAFLLNGRLVEFG 222

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  155 bits (394), Expect = 8e-45
 Identities = 85/243 (34%), Positives = 127/243 (52%), Gaps = 41/243 (16%)

Query: 80  VQFVNISFHYPSR--PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 137
           ++  N+S  +      TV  L+ V L I   E+  I+G SG+GKST + L+  L  P+ G
Sbjct: 2   IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61

Query: 138 QIYIDGFPLTDLD---IRWLREKIGFVGQEPQLL-QMDIKSNIMY-----GCPKDVKNED 188
            +++DG  LT L    +R LR+KIG + Q   LL    +  N+ +     G PK      
Sbjct: 62  SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPK------ 115

Query: 189 IEWAAKQAYVHEFILSLPCGYETLVD-DDL-------LSGGQKQRIAIARAILRDPAILL 240
              A  +  V E +         LV   D        LSGGQKQR+AIARA+  +P ILL
Sbjct: 116 ---AEIKQRVAELL--------ELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILL 164

Query: 241 LDEATSALDSESEHYVKGVLHALRN-DCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRII 298
            DEATSALD E+    + +L  L++ + +   T+++I H +  +K + DR+ V+D GR++
Sbjct: 165 CDEATSALDPET---TQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLV 221

Query: 299 EVG 301
           E G
Sbjct: 222 EEG 224

Length = 339

>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit

 Score =  159 bits (404), Expect = 1e-44
 Identities = 86/284 (30%), Positives = 145/284 (51%), Gaps = 11/284 (3%)

Query: 1   MAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDL 60
            A+  GG ++  G+++P  L   VL       A   +      L +   A E++ +++D 
Sbjct: 254 GALWAGGPAVADGRLAPVTLAVLVLLPLAAFEAFAALPAAAQQLTRVRAAAERIVEVLDA 313

Query: 61  LPSNQFLSEGVKLQRLMGHVQFV--NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSG 118
                  S        +G       ++S  YP  P  P+L+ V L +   E VAI+G SG
Sbjct: 314 AGPVAEGSAPAAGAVGLGKPTLELRDLSAGYPGAP--PVLDGVSLDLPPGERVAILGPSG 371

Query: 119 SGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMY 178
           SGKST +  L  L +P  G++ +DG P++ LD   +R ++    Q+  L    ++ N+  
Sbjct: 372 SGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRL 431

Query: 179 GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDP 236
             P D  +E++  A ++  + +++ +LP G +T++ +    LSGG++QR+A+ARA+L D 
Sbjct: 432 ARP-DATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADA 490

Query: 237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL 280
            ILLLDE T  LD+E+      +L  L     + RTV++I H L
Sbjct: 491 PILLLDEPTEHLDAETA---DELLEDLL-AALSGRTVVLITHHL 530

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score =  151 bits (383), Expect = 2e-44
 Identities = 74/232 (31%), Positives = 116/232 (50%), Gaps = 23/232 (9%)

Query: 84  NISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 142
           N+S  +P+   +V  L+ V  +I+  E + +VG SGSGKST    +L L +P+ G I  D
Sbjct: 6   NLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFD 65

Query: 143 GFPLTDLDIRWLRE---KIGFVGQEPQL-L--QMDIKSNIMYGCPKDVKNEDIEWAAKQA 196
           G  L  L  R  +    +I  V Q+P   L  +M I   I     +       + A K+A
Sbjct: 66  GKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEP-LRIHGKLSKKEARKEA 124

Query: 197 YVHEFILSLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDS 250
            +   +         L ++ L      LSGGQ+QR+AIARA+  +P +L+ DE TSALD 
Sbjct: 125 VLLLLVGVG------LPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDV 178

Query: 251 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 301
             +  +  +L  L+   +   T++ I H L  +  + DR+ V+  G+I+E G
Sbjct: 179 SVQAQILDLLKKLQE--ELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score =  161 bits (409), Expect = 3e-44
 Identities = 101/314 (32%), Positives = 161/314 (51%), Gaps = 62/314 (19%)

Query: 40  NLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILN 99
           N++  ++S+ AT  ++++I+  P  +   +G KL+ +   +QF N+ FHY +R  V I  
Sbjct: 344 NITEYMKSLEATNSLYEIINRKPLVENNDDGKKLKDIK-KIQFKNVRFHYDTRKDVEIYK 402

Query: 100 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI-DGFPLTDLDIRWLREKI 158
            +  T+   +  A VG SG GKST + L+ RLY+P++G I I D   L D++++W R KI
Sbjct: 403 DLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKI 462

Query: 159 GFVGQEPQLLQMDIKSNIMYGC-------------------PKDVKNEDIEWAAK----- 194
           G V Q+P L    IK+NI Y                      ++ KN+     AK     
Sbjct: 463 GVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDL 522

Query: 195 ----QAYVHEFILSLPCGYETLVDDDLL------------------------------SG 220
                      ++ +   Y+T+ D +++                              SG
Sbjct: 523 NDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSG 582

Query: 221 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL 280
           GQKQRI+IARAI+R+P IL+LDEATS+LD++SE+ V+  ++ L+ +    R  I+IAHRL
Sbjct: 583 GQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGN--ENRITIIIAHRL 640

Query: 281 STIKAVDRIVVIDD 294
           STI+  + I V+ +
Sbjct: 641 STIRYANTIFVLSN 654

Length = 1466

>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters

 Score =  148 bits (377), Expect = 1e-43
 Identities = 79/229 (34%), Positives = 118/229 (51%), Gaps = 27/229 (11%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           ++  N+   +       +L  + LT++  EVV I+G SGSGKST +  +  L EP  G I
Sbjct: 1   IEIKNLHKSFGDFH---VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTI 57

Query: 140 YIDGFPLTD--LDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQA 196
            IDG  LTD   +I  LR+K+G V Q+  L   + +  NI    P  VK      A ++A
Sbjct: 58  IIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLA-PIKVKGMSKAEAEERA 116

Query: 197 YVH-------EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 249
                     +   + P           LSGGQ+QR+AIARA+  +P ++L DE TSALD
Sbjct: 117 LELLEKVGLADKADAYP---------AQLSGGQQQRVAIARALAMNPKVMLFDEPTSALD 167

Query: 250 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRI 297
            E    V  VL  +++  +   T++V+ H +   + V DR++ +DDGRI
Sbjct: 168 PE---LVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213

HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score =  148 bits (375), Expect = 3e-43
 Identities = 75/238 (31%), Positives = 121/238 (50%), Gaps = 20/238 (8%)

Query: 80  VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 138
           ++  N+S  +      V  L  V L++   E+  I+G SG+GKST +  +  L  P+ G 
Sbjct: 2   IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61

Query: 139 IYIDGFPLTDL---DIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAK 194
           + +DG  LT L   ++R  R +IG + Q   LL    +  N+    P ++          
Sbjct: 62  VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVAL--PLEI------AGVP 113

Query: 195 QAYVHEFILSLP--CGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 250
           +A + E +L L    G E   D     LSGGQKQR+ IARA+  +P +LL DEATSALD 
Sbjct: 114 KAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDP 173

Query: 251 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 307
           E+   +  +L  +    +   T+++I H +  +K + DR+ V++ G ++E G   E+ 
Sbjct: 174 ETTQSILALLRDIN--RELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVF 229

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score =  145 bits (368), Expect = 4e-43
 Identities = 73/217 (33%), Positives = 105/217 (48%), Gaps = 61/217 (28%)

Query: 81  QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY 140
           +  N+SF Y  R     L++V LT++A E+VA+VG +GSGKST +  +  L +P+ G+I 
Sbjct: 1   EIENLSFRYGGRT---ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57

Query: 141 IDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHE 200
           IDG  +  L +  LR +IG+V   PQL                                 
Sbjct: 58  IDGKDIAKLPLEELRRRIGYV---PQL--------------------------------- 81

Query: 201 FILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL 260
                             SGGQ+QR+A+ARA+L +P +LLLDE TS LD  S      +L
Sbjct: 82  ------------------SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRE---RLL 120

Query: 261 HALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGR 296
             LR   +  RTVI++ H       A DR++V+ DG+
Sbjct: 121 ELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  147 bits (373), Expect = 2e-42
 Identities = 77/236 (32%), Positives = 129/236 (54%), Gaps = 21/236 (8%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           ++  N+SF YP+      L +V   I   E VAI+G +GSGKST   +L  L +P  G+I
Sbjct: 8   IKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66

Query: 140 YIDGFPLTDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGC------PKDVKNEDIEW 191
            IDG  ++  +++ +R+KIG + Q P  Q +   ++ +I +G       PK +K + I+ 
Sbjct: 67  KIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMK-DIIDD 125

Query: 192 AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 251
            AK+  + +++   P           LSGGQKQR+AIA  +  +P I++ DE+TS LD +
Sbjct: 126 LAKKVGMEDYLDKEP---------QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPK 176

Query: 252 SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 307
            +  +K ++  LR     K+T+I I H +      D+++V  +G++I  G   E+L
Sbjct: 177 GKREIKKIMVDLRK--TRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEIL 230

Length = 271

>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C

 Score =  144 bits (364), Expect = 6e-42
 Identities = 71/225 (31%), Positives = 121/225 (53%), Gaps = 25/225 (11%)

Query: 78  GHVQFVNISFHY-PSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 136
           G ++  N+S  Y P  P  P+L +V   ++A E + IVG +G+GKST +  L R  E  +
Sbjct: 5   GEIEVENLSVRYAPDLP--PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE 62

Query: 137 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQA 196
           G+I IDG  ++ + +  LR  +  + Q+P L    I+SN+      D  +   E++ ++ 
Sbjct: 63  GKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNL------DPFD---EYSDEEI 113

Query: 197 YVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 256
           Y     L +  G         LS GQ+Q + +ARA+L+ P +L+LDEAT+++D  ++  +
Sbjct: 114 YG---ALRVSEGGLN------LSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALI 164

Query: 257 KGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 301
           +  +     +     T++ IAHRL TI   D+I+V+D G + E  
Sbjct: 165 QKTIREEFTNS----TILTIAHRLRTIIDYDKILVMDAGEVKEYD 205

Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score =  142 bits (360), Expect = 4e-41
 Identities = 76/241 (31%), Positives = 115/241 (47%), Gaps = 47/241 (19%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           ++   +S  Y S   V  L+ + LT+E  E +A++G SG GK+T + L+  L  P  G+I
Sbjct: 1   LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI 57

Query: 140 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGC-----PKDVKNEDIEWAA 193
            IDG  +T +     R  IG V Q+  L   + +  NI +G      PK      +    
Sbjct: 58  LIDGRDVTGVPPE--RRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELL 115

Query: 194 K--------QAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEAT 245
           +          Y HE                 LSGGQ+QR+A+ARA+ R+P++LLLDE  
Sbjct: 116 ELVGLEGLLNRYPHE-----------------LSGGQQQRVALARALAREPSLLLLDEPL 158

Query: 246 SALDSES----EHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEV 300
           SALD++        +K +   L        T I + H      A+ DRI V+++GRI++V
Sbjct: 159 SALDAKLREELREELKELQREL------GITTIYVTHDQEEALALADRIAVMNEGRIVQV 212

Query: 301 G 301
           G
Sbjct: 213 G 213

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score =  139 bits (354), Expect = 9e-41
 Identities = 60/215 (27%), Positives = 108/215 (50%), Gaps = 47/215 (21%)

Query: 84  NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 143
           N+S  Y  +     L+ + LT+E  E+  ++G +G+GK+T + ++L L +P  G+I + G
Sbjct: 5   NLSKRYGKKT---ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLG 61

Query: 144 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFIL 203
             +   +   ++ +IG++ +EP L +                                 L
Sbjct: 62  KDIKK-EPEEVKRRIGYLPEEPSLYEN--------------------------------L 88

Query: 204 SLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 263
           +     E L     LSGG KQR+A+A+A+L DP +L+LDE TS LD ES      +L  L
Sbjct: 89  T---VRENL----KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLREL 141

Query: 264 RNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRI 297
           + +    +T+++ +H L   + + DR+ ++++GRI
Sbjct: 142 KKE---GKTILLSSHILEEAERLCDRVAILNNGRI 173

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score =  143 bits (363), Expect = 1e-40
 Identities = 77/237 (32%), Positives = 122/237 (51%), Gaps = 23/237 (9%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           ++F N+S  Y ++     ++ V LTIE  E + ++G SGSGK+T + ++ RL EP+ G+I
Sbjct: 2   IEFENVSKRYGNKK---AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58

Query: 140 YIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYV 198
            IDG  ++DLD   LR KIG+V Q+  L   + +  NI    PK +     +    +   
Sbjct: 59  LIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIAT-VPKLLG---WDKERIKKRA 114

Query: 199 HEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 256
            E +  +        D     LSGGQ+QR+ +ARA+  DP ILL+DE   ALD  +    
Sbjct: 115 DELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITR--- 171

Query: 257 KGVLHALRNDCKT-----KRTVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGNHAELL 307
                 L+ + K       +T++ + H +   +K  DRI V+D G I++     E+L
Sbjct: 172 ----KQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEIL 224

Length = 309

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score =  143 bits (362), Expect = 5e-40
 Identities = 77/240 (32%), Positives = 118/240 (49%), Gaps = 23/240 (9%)

Query: 77  MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 136
           M  ++  N+   + S   +  +N   L IE  E V ++G SG GKST + ++  L EP+ 
Sbjct: 1   MAELELKNVRKSFGSFEVLKDVN---LDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTS 57

Query: 137 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNI-----MYGCPKDVKNEDIE 190
           G+I IDG  +TDL     +  I  V Q   L   M +  NI     + G PK   ++ ++
Sbjct: 58  GEILIDGRDVTDLPPE--KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVK 115

Query: 191 WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 250
             AK   +   +   P           LSGGQ+QR+A+ARA++R P + LLDE  S LD+
Sbjct: 116 EVAKLLGLEHLLNRKP---------LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDA 166

Query: 251 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHK 309
           +    ++  +  L    +   T I + H       + DRIVV++DGRI +VG   EL  +
Sbjct: 167 KLRVLMRSEIKKLHE--RLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER 224

Length = 338

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score =  139 bits (353), Expect = 5e-40
 Identities = 73/232 (31%), Positives = 120/232 (51%), Gaps = 28/232 (12%)

Query: 80  VQFVNISFHYPS-RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 138
           ++  N+S  Y      V  L  + L++E  E VA+VG SG GKST + ++  L  P+ G+
Sbjct: 1   LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60

Query: 139 IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAY 197
           + +DG P+T           G+V Q+  LL  + +  N+  G    ++ + +  A  +  
Sbjct: 61  VLVDGEPVTGPGPD-----RGYVFQQDALLPWLTVLDNVALG----LELQGVPKAEARER 111

Query: 198 VHEFI----LSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 253
             E +    LS   G+E       LSGG +QR+A+ARA+  DP +LLLDE  SALD+ + 
Sbjct: 112 AEELLELVGLS---GFENAYPHQ-LSGGMRQRVALARALAVDPDVLLLDEPFSALDALTR 167

Query: 254 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV---DRIVVID--DGRIIEV 300
             ++  L  +    +T +TV+++ H +   +AV   DR+VV+    GRI+  
Sbjct: 168 EQLQEELLDIWR--ETGKTVLLVTHDID--EAVFLADRVVVLSARPGRIVAE 215

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  139 bits (351), Expect = 1e-39
 Identities = 83/228 (36%), Positives = 123/228 (53%), Gaps = 17/228 (7%)

Query: 77  MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 136
           M  ++F  +S+   S     IL  + +  E   +  IVG SG+GKST + L+ RL +P++
Sbjct: 1   MNEIEFKEVSY---SSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTE 57

Query: 137 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP--KDVKNEDIEWAAK 194
           G I IDG  +  +D+  LR KIG V Q+P L +  +K NI YG P  K  KN D+E+   
Sbjct: 58  GSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYG-PMLKGEKNVDVEYYLS 116

Query: 195 QAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 254
                  I+ L   Y T    + LSGG+ QR++IAR +  +P +LLLDE TSALD  S  
Sbjct: 117 -------IVGLNKEYATRDVKN-LSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTE 168

Query: 255 YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 301
            ++ ++  L+N  K   TVI I H +   K + D    ++ G ++E  
Sbjct: 169 IIEELIVKLKN--KMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYA 214

Length = 241

>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  140 bits (354), Expect = 2e-39
 Identities = 77/236 (32%), Positives = 117/236 (49%), Gaps = 23/236 (9%)

Query: 84  NISFHYP--SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 141
           +ISF YP  +      L  V  ++   E VAIVG +GSGKST   LL  L  P  G I +
Sbjct: 10  HISFRYPDAATYA---LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITV 66

Query: 142 DGFPLTDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMY-----GCPKDVKNEDIEWAAK 194
            G  L++  +  +R ++G V Q P  Q +   ++ ++ +     G P++   E ++ A +
Sbjct: 67  GGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALR 126

Query: 195 QAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 254
           Q  + +F+   P           LSGGQKQR+AIA  +   P I++LDEATS LD     
Sbjct: 127 QVGMEDFLNREPHR---------LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRR 177

Query: 255 YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG 310
            V   +  L+   +   TV+ I H L      DR++V++ G I+E G   E+   G
Sbjct: 178 EVLETVRQLKE--QKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKSG 231

Length = 279

>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP)

 Score =  147 bits (372), Expect = 2e-39
 Identities = 84/245 (34%), Positives = 138/245 (56%), Gaps = 13/245 (5%)

Query: 78   GHVQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 136
            G V+F N    Y  R  +  +L H+ +TI   E V IVG +G+GKS+    L R+ E ++
Sbjct: 1283 GRVEFRNYCLRY--REDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAE 1340

Query: 137  GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI-MYGCPKDVKNEDIEWAAKQ 195
            G+I IDG  +  + +  LR KI  + Q+P L    ++ N+  +    D   E++ WA + 
Sbjct: 1341 GEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSD---EEVWWALEL 1397

Query: 196  AYVHEFILSLPCG--YETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 253
            A++  F+ +LP    +E     + LS GQ+Q + +ARA+LR   IL+LDEAT+A+D E++
Sbjct: 1398 AHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETD 1457

Query: 254  HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLY 313
            + ++  +     DC    TV+ IAHRL+TI    R++V+D G + E G  + LL +  ++
Sbjct: 1458 NLIQSTIRTQFEDC----TVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQRGIF 1513

Query: 314  AKLVK 318
              + K
Sbjct: 1514 YSMAK 1518

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score =  136 bits (346), Expect = 1e-38
 Identities = 73/236 (30%), Positives = 124/236 (52%), Gaps = 27/236 (11%)

Query: 84  NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 143
           N+SF Y  +P   IL+ +  +I   E+  I+G +GSGKST +  L  L +P  G++ +DG
Sbjct: 7   NLSFGYGGKP---ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDG 63

Query: 144 FPLTDLDIRWLREKIGFVGQEP---------QLLQMDIKSNI-MYGCPKDVKNEDIEWAA 193
             +  L  + L +K+ +V Q P         +L+ +    ++ ++G P     E +E A 
Sbjct: 64  KDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEAL 123

Query: 194 KQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 253
           +   +           +  VD+  LSGG++QR+ IARA+ ++  ILLLDE TS LD    
Sbjct: 124 ELLGLEHLA-------DRPVDE--LSGGERQRVLIARALAQETPILLLDEPTSHLD---I 171

Query: 254 HYVKGVLHALRNDCKTK-RTVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGNHAELL 307
            +   VL  LR+  + K  TV+++ H L+   +  D ++++ DG+I+  G   E+L
Sbjct: 172 AHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227

Length = 258

>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

 Score =  136 bits (346), Expect = 2e-38
 Identities = 68/234 (29%), Positives = 110/234 (47%), Gaps = 52/234 (22%)

Query: 84  NISFHYPSR------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 137
           N+  ++P          V  ++ V  +I+  E + +VG SG GKST   L+L L EP+ G
Sbjct: 9   NLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSG 68

Query: 138 QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAY 197
           +I  +G  +T L     RE++         L++  K     G P++             Y
Sbjct: 69  EILFEGKDITKLSKEERRERV---------LELLEKV----GLPEEFLYR---------Y 106

Query: 198 VHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 257
            HE                  SGGQ+QRI IARA+  +P +++ DE  SALD   +    
Sbjct: 107 PHEL-----------------SGGQRQRIGIARALALNPKLIVADEPVSALDVSVQ---A 146

Query: 258 GVLHALRNDCKTKR--TVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLH 308
            +L+ L+ D + +   T + I+H LS ++ + DRI V+  G+I+E+G   E+  
Sbjct: 147 QILNLLK-DLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFS 199

Length = 268

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score =  133 bits (336), Expect = 4e-38
 Identities = 66/223 (29%), Positives = 113/223 (50%), Gaps = 46/223 (20%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           +   N+SF YP +    +L ++ L ++  E +A++G SGSGKST + LL    +P  G+I
Sbjct: 1   LSINNVSFSYPEQEQ-QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59

Query: 140 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVH 199
            +DG P++DL+ + L   I  + Q P L    +++N+  G                    
Sbjct: 60  TLDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL--GRR------------------ 98

Query: 200 EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV-KG 258
                              SGG++QR+A+AR +L+D  I+LLDE T  LD  +E  +   
Sbjct: 99  ------------------FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSL 140

Query: 259 VLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 301
           +   L++     +T+I I H L+ I+ +D+I+ +++G+II  G
Sbjct: 141 IFEVLKD-----KTLIWITHHLTGIEHMDKILFLENGKIIMQG 178

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system

 Score =  136 bits (344), Expect = 4e-38
 Identities = 75/221 (33%), Positives = 116/221 (52%), Gaps = 22/221 (9%)

Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE- 156
           +N V L +   E+  I+GLSGSGKST +  + RL EP+ G++ IDG  +  +  + LRE 
Sbjct: 40  VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELREL 99

Query: 157 ---KIGFVGQEPQLL-QMDIKSNIMY-----GCPKDVKNEDIEWAAKQAYVHEFILSLPC 207
              KI  V Q   LL    +  N+ +     G P+  + E    A +   +  +    P 
Sbjct: 100 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP- 158

Query: 208 GYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 267
                   D LSGG +QR+ +ARA+  DP ILL+DEA SALD      ++  L  L+   
Sbjct: 159 --------DELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQA-- 208

Query: 268 KTKRTVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGNHAELL 307
           + ++T++ I H L   ++  DRI ++ DGR+++VG   E+L
Sbjct: 209 ELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEIL 249

This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269

>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C

 Score =  133 bits (338), Expect = 6e-38
 Identities = 71/232 (30%), Positives = 109/232 (46%), Gaps = 43/232 (18%)

Query: 80  VQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 137
           +   + SF + S    T   L  + L +   E+VAIVG  GSGKS+ ++ LL   E   G
Sbjct: 1   ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60

Query: 138 QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD-------VK----N 186
            + + G              I +V QEP +    I+ NI++G P D       +K     
Sbjct: 61  SVSVPG-------------SIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALE 107

Query: 187 EDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEA 244
            D+E              LP G  T + +    LSGGQKQRI++ARA+  D  I LLD+ 
Sbjct: 108 PDLE-------------ILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDP 154

Query: 245 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 296
            SA+D+    ++    + +       +T I++ H+L  +   D+IVV+D+GR
Sbjct: 155 LSAVDAHVGRHI--FENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204

This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204

>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein

 Score =  133 bits (338), Expect = 1e-37
 Identities = 74/229 (32%), Positives = 115/229 (50%), Gaps = 35/229 (15%)

Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-----GQIYIDGFPLTD--LD 150
           L ++ L I  N+V A++G SG GKST +  L R+ +        G++  DG  + D  +D
Sbjct: 17  LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76

Query: 151 IRWLREKIGFVGQEPQLLQMDIKSNIMYGC------PKDVKNEDIEWAAKQAYVHEFILS 204
           +  LR ++G V Q+P    M I  NI YG        K   +E +E + K+A       +
Sbjct: 77  VVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKA-------A 129

Query: 205 LPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 258
           L       V D L      LSGGQ+QR+ IARA+  +P +LLLDE TSALD  +   ++ 
Sbjct: 130 LW----DEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEE 185

Query: 259 VLHALRNDCKTKRTVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGNHAEL 306
           ++  L    K K T++++ H +    +  DR     DG ++E G   ++
Sbjct: 186 LIQEL----KKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score =  133 bits (336), Expect = 3e-37
 Identities = 79/251 (31%), Positives = 121/251 (48%), Gaps = 45/251 (17%)

Query: 81  QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY 140
           +  N+S  YP+      L  V L+I   E VA++G SG+GKST +  L  L EP+ G + 
Sbjct: 2   EVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVL 59

Query: 141 IDGFPLTDL---DIRWLREKIGFVGQEPQLL-QMDIKSNIMYG----------CPKDVKN 186
           IDG  +  L    +R LR +IG + Q+  L+ ++ +  N++ G                 
Sbjct: 60  IDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPK 119

Query: 187 EDIEWA---------AKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 237
           E+ + A           +AY                  D LSGGQ+QR+AIARA+++ P 
Sbjct: 120 EEKQRALAALERVGLLDKAY-------QRA--------DQLSGGQQQRVAIARALMQQPK 164

Query: 238 ILLLDEATSALDSESEHYVKGVLHALRNDCKTK-RTVIVIAHRLSTIKA-VDRIVVIDDG 295
           ++L DE  ++LD  S      V+  L+   + +  TVIV  H++   +   DRIV + DG
Sbjct: 165 LILADEPVASLDPASSRQ---VMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDG 221

Query: 296 RIIEVGNHAEL 306
           RI+  G  AEL
Sbjct: 222 RIVFDGPPAEL 232

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score =  131 bits (331), Expect = 4e-37
 Identities = 69/221 (31%), Positives = 108/221 (48%), Gaps = 47/221 (21%)

Query: 84  NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 143
           N+S  Y  R    +L+ + L+IEA E+V I+G +G+GKST +  L  L +PS G+I +DG
Sbjct: 4   NLSVGYGGRT---VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDG 60

Query: 144 FPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFI 202
             L  L  + L  KI +V   PQ L  + +                              
Sbjct: 61  KDLASLSPKELARKIAYV---PQALELLGL----------------------AHLADRPF 95

Query: 203 LSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHA 262
                          LSGG++QR+ +ARA+ ++P ILLLDE TS LD     +   +L  
Sbjct: 96  NE-------------LSGGERQRVLLARALAQEPPILLLDEPTSHLDI---AHQIELLEL 139

Query: 263 LRNDCKTK-RTVIVIAHRLS-TIKAVDRIVVIDDGRIIEVG 301
           LR   + + +TV+++ H L+   +  DR++++ DGRI+  G
Sbjct: 140 LRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score =  131 bits (332), Expect = 1e-36
 Identities = 82/236 (34%), Positives = 116/236 (49%), Gaps = 25/236 (10%)

Query: 84  NISFHYPSRPTV-PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 142
           N+S  Y         LN+V L IE  E + IVG SGSGKST   LL  L +PS G I +D
Sbjct: 8   NLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLD 67

Query: 143 GFPLTDLD-IRWLREKIGFVGQEPQLL---QMDIKSNIMYG-CPKDVKNEDIEWAAKQAY 197
           G PL      +     +  V Q+P      +  +   +     P  +       A     
Sbjct: 68  GKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQ 127

Query: 198 VH---EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 254
           V     F+   P           LSGGQ+QRIAIARA++ +P +L+LDE TSALD     
Sbjct: 128 VGLPPSFLDRRP---------HELSGGQRQRIAIARALIPEPKLLILDEPTSALDV---- 174

Query: 255 YVKGVLHALRNDCKTKR--TVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 307
            V+  +  L  + K +R  T + I+H L+ ++ + DRI V+D+G+I+E+G   ELL
Sbjct: 175 SVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL 230

Length = 252

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score =  130 bits (329), Expect = 3e-36
 Identities = 75/242 (30%), Positives = 118/242 (48%), Gaps = 29/242 (11%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           ++   ++  +  R    +L  V L +   E++AI+G SGSGKST + L++ L  P  G++
Sbjct: 1   IELRGLTKSFGGRT---VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57

Query: 140 YIDGFPLTDL---DIRWLREKIGFVGQEPQLL-QMDIKSNIMY------GCPKDVKNEDI 189
            IDG  ++ L   ++  LR ++G + Q   L   + +  N+ +         ++   E +
Sbjct: 58  LIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIV 117

Query: 190 EWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 249
               K   V      L  G E L   +L SGG K+R+A+ARA+  DP +LL DE T+ LD
Sbjct: 118 --LEKLEAV-----GLR-GAEDLYPAEL-SGGMKKRVALARALALDPELLLYDEPTAGLD 168

Query: 250 SESEHYVKGVLHALRNDCK--TKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAEL 306
                   GV+  L    K     T I++ H L T  A+ DRI V+ DG+I+  G   EL
Sbjct: 169 P----IASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224

Query: 307 LH 308
             
Sbjct: 225 RA 226

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score =  132 bits (335), Expect = 4e-36
 Identities = 70/255 (27%), Positives = 117/255 (45%), Gaps = 58/255 (22%)

Query: 77  MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 136
              ++  N+S  +        ++ + L I+  E V ++G SG GK+T + ++    +PS 
Sbjct: 3   KPALEIRNVSKSFGD---FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS 59

Query: 137 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYG--CPKDVKNEDIEWAA 193
           G+I +DG  +TD+     +  IG V Q   L   M ++ N+ +G    K +K  +I+   
Sbjct: 60  GEILLDGEDITDVPPE--KRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARV 117

Query: 194 KQA------------YVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLL 241
           ++A              H+                 LSGGQ+QR+A+ARA++ +P +LLL
Sbjct: 118 EEALELVGLEGFADRKPHQ-----------------LSGGQQQRVALARALVPEPKVLLL 160

Query: 242 DEATSALDSESEHYVKGVLHALRNDC---------KTKRTVIVIAHRLSTIKAV-DRIVV 291
           DE  SALD++           LR            +   T + + H      A+ DRI V
Sbjct: 161 DEPLSALDAK-----------LREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAV 209

Query: 292 IDDGRIIEVGNHAEL 306
           ++DGRI +VG   E+
Sbjct: 210 MNDGRIEQVGTPEEI 224

Length = 352

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  129 bits (328), Expect = 5e-36
 Identities = 73/236 (30%), Positives = 115/236 (48%), Gaps = 34/236 (14%)

Query: 77  MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 136
           M  ++   +S  +     V +L  + L++E  E VAI+G SG GKST + L+  L +P+ 
Sbjct: 1   MALLEIEGVSKSFG---GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTS 57

Query: 137 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVKNEDIEWAAK 194
           G++ +DG P+T          IG+V QE  LL  + +  N+  G   +     +    AK
Sbjct: 58  GEVLLDGRPVTG-----PGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAK 112

Query: 195 QAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 254
              +    L+   G+E       LSGG +QR+AIARA+   P +LLLDE   ALD+    
Sbjct: 113 -ELLELVGLA---GFEDKYPHQ-LSGGMRQRVAIARALATRPKLLLLDEPFGALDA---- 163

Query: 255 YVKGVLHALRND--CKTKRTVIVIAH------RLSTIKAVDRIVVIDD--GRIIEV 300
             +  L         +T++TV+++ H       L+     DR+VV+ +  GRI E 
Sbjct: 164 LTREELQDELLRLWEETRKTVLLVTHDVDEAVYLA-----DRVVVLSNRPGRIGEE 214

Length = 248

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score =  134 bits (339), Expect = 1e-35
 Identities = 75/228 (32%), Positives = 113/228 (49%), Gaps = 15/228 (6%)

Query: 84  NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 143
            IS  +     V  L+ V LT+   EV A++G +G+GKST + +L  +Y P  G+I IDG
Sbjct: 13  GISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDG 69

Query: 144 FPLTDLDIRWLREK-IGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEF 201
            P+     R      I  V QE  L+  + +  NI  G     +   I+  A +    E 
Sbjct: 70  KPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRAREL 129

Query: 202 I--LSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD-SESEHYVKG 258
           +  L L    +TLV D  LS  Q+Q + IARA+  D  +L+LDE T+AL   E+E  +  
Sbjct: 130 LARLGLDIDPDTLVGD--LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETER-LFD 186

Query: 259 VLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAE 305
           ++  L+        +I I+HRL  +  + DRI V+ DGR++     A 
Sbjct: 187 LIRRLKAQ---GVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAA 231

Length = 500

>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed

 Score =  128 bits (323), Expect = 2e-35
 Identities = 82/234 (35%), Positives = 127/234 (54%), Gaps = 17/234 (7%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           ++F N+S H+       +L+++ L I+  EVV I+G SGSGKST +  + +L E + G +
Sbjct: 2   IEFKNVSKHFG---PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL 58

Query: 140 YIDGFPLTD--LDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQA 196
            +DG  + D  +D R +R++ G V Q+  L   +    N+M+G P  V+    E A KQA
Sbjct: 59  IVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFG-PLRVRGASKEEAEKQA 117

Query: 197 YVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 254
              E +  +  G           LSGGQ+QR+AIARA+   P ++L DE TSALD E  H
Sbjct: 118 --RELLAKV--GLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRH 173

Query: 255 YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 307
            V  V+  L  +     T++++ H +   + V  R++ ID GRI E G+   L+
Sbjct: 174 EVLKVMQDLAEE---GMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLI 224

Length = 240

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score =  131 bits (330), Expect = 2e-35
 Identities = 84/226 (37%), Positives = 113/226 (50%), Gaps = 32/226 (14%)

Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE- 156
           +N   L I   E+  I+GLSGSGKST V +L RL EP+ GQI+IDG  +       LRE 
Sbjct: 9   VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREV 68

Query: 157 ---KIGFVGQEPQLL-QMDIKSNIMY-----GCPKDVKNEDIEWAAKQAYVHEFILSLPC 207
              KIG V Q+  L   M I  N        G P+  + E      K   + E+    P 
Sbjct: 69  RRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYP- 127

Query: 208 GYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD-----SESEHYVKGVLHA 262
                   D LSGG +QR+ +ARA+  +P ILL+DEA SALD     S  +   K  L A
Sbjct: 128 --------DELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKK--LQA 177

Query: 263 LRNDCKTKRTVIVIAHRL-STIKAVDRIVVIDDGRIIEVGNHAELL 307
                  ++T++ I H L   I+  DRIV++  G I++VG   E+L
Sbjct: 178 -----TLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEIL 218

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score =  133 bits (338), Expect = 3e-35
 Identities = 80/239 (33%), Positives = 120/239 (50%), Gaps = 22/239 (9%)

Query: 84  NISFHYPSRPT--------VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 135
           N+S  Y SR          V  ++ V   +   E + +VG SGSGKST   +L  L  PS
Sbjct: 285 NLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS 344

Query: 136 DGQIYIDG--FPLTDLDIRWLREKIGFVGQEPQL-L--QMDIKSNIMYGCPKDVKNEDIE 190
            G I  DG    LT  ++R LR +I  V Q+P   L  +M +   +         +    
Sbjct: 345 SGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPL---RIHGGGS 401

Query: 191 WAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSAL 248
            A ++A V E +L L       +D     LSGGQ+QR+AIARA+  +P +L+LDE  SAL
Sbjct: 402 GAERRARVAE-LLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSAL 460

Query: 249 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAEL 306
           D   +  V  +L  L+ +     T + I+H L+ ++ + DR+ V+ DGRI+E G   ++
Sbjct: 461 DVSVQAQVLNLLKDLQEELGL--TYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKV 517

Length = 539

>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional

 Score =  133 bits (337), Expect = 1e-34
 Identities = 83/255 (32%), Positives = 141/255 (55%), Gaps = 32/255 (12%)

Query: 78   GHVQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 136
            G ++F ++   Y  RP +P +L+ +   I  +E V IVG +G+GKS+ +N L R+ E   
Sbjct: 1236 GSIKFEDVVLRY--RPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELER 1293

Query: 137  GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNE----DIEWA 192
            G+I IDG  ++   +  LR+ +G + Q P L    ++ N+      D  NE    D+  +
Sbjct: 1294 GRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNL------DPFNEHNDADLWES 1347

Query: 193  AKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 250
             ++A++ + I     G +  V +  +  S GQ+Q +++ARA+LR   IL+LDEAT+A+D 
Sbjct: 1348 LERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDV 1407

Query: 251  ESEHYVKGVLHALRNDCKTKR------TVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHA 304
             ++  ++          KT R      T+++IAHRL+TI   DRI+V+D GR++E     
Sbjct: 1408 RTDALIQ----------KTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPE 1457

Query: 305  ELLHK-GRLYAKLVK 318
             LL   G  ++K+V+
Sbjct: 1458 NLLSNEGSAFSKMVQ 1472

Length = 1622

>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  124 bits (315), Expect = 4e-34
 Identities = 70/226 (30%), Positives = 110/226 (48%), Gaps = 36/226 (15%)

Query: 97  ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-----GQIYIDGFPLTD--L 149
            L  + L I  N+V A++G SG GKST +  L R+ +        G++ +DG  + D  +
Sbjct: 22  ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKV 81

Query: 150 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK------DVKNEDIEWAAKQAYVHEFIL 203
           D+  LR ++G V Q+P    M I  N+ YG  +         +E +E + K+A + +   
Sbjct: 82  DVVELRRRVGMVFQKPNPFPMSIYDNVAYG-LRLHGIKDKELDEIVESSLKKAALWD--- 137

Query: 204 SLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 257
                    V D L      LSGGQ+QR+ IARA+   P +LL+DE TSALD  S   ++
Sbjct: 138 --------EVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIE 189

Query: 258 GVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGN 302
            ++  L    K K T++++ H +     V D       G ++E G 
Sbjct: 190 ELITEL----KKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGP 231

Length = 253

>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional

 Score =  126 bits (319), Expect = 9e-34
 Identities = 84/242 (34%), Positives = 128/242 (52%), Gaps = 40/242 (16%)

Query: 80  VQFVNISFHYP-SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 138
           ++  NIS  +P    T+  LN+V L I A E+  ++G SG+GKST +  +  L  P+ G+
Sbjct: 2   IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61

Query: 139 IYIDGFPLTDLD---IRWLREKIGFVGQEPQLL-QMDIKSNI-----MYGCPKDVKNEDI 189
           + +DG  LT L    +R  R +IG + Q   LL    +  N+     + G PK     +I
Sbjct: 62  VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPK----AEI 117

Query: 190 EWAAKQAYVHEFILSLPCGYETLVD-DDL-------LSGGQKQRIAIARAILRDPAILLL 241
           +     A V E +         LV   D        LSGGQKQR+AIARA+  +P +LL 
Sbjct: 118 K-----ARVTELL--------ELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLC 164

Query: 242 DEATSALDSESEHYVKGVLHALRN-DCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIE 299
           DEATSALD  +    + +L  L++ + +   T+++I H +  +K + DR+ VID GR++E
Sbjct: 165 DEATSALDPAT---TRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVE 221

Query: 300 VG 301
            G
Sbjct: 222 QG 223

Length = 343

>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

 Score =  127 bits (320), Expect = 1e-33
 Identities = 81/223 (36%), Positives = 115/223 (51%), Gaps = 22/223 (9%)

Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE- 156
           +N   L +E  E+  I+GLSGSGKST V LL RL EP+ G+I +DG  +  L    LRE 
Sbjct: 44  VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103

Query: 157 ---KIGFVGQEPQLL-QMDIKSNIMY-----GCPKDVKNEDIEWAAKQAYVHEFILSLPC 207
              KI  V Q   LL    +  N+ +     G PK  + E    A +   +  +    P 
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP- 162

Query: 208 GYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 267
                   + LSGG +QR+ +ARA+  DP ILL+DEA SALD      ++  L  L+   
Sbjct: 163 --------NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQA-- 212

Query: 268 KTKRTVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGNHAELLHK 309
           K K+T++ I H L   ++  DRI ++ DG I++VG   E+L  
Sbjct: 213 KLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLN 255

Length = 386

>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  124 bits (312), Expect = 2e-33
 Identities = 81/231 (35%), Positives = 125/231 (54%), Gaps = 12/231 (5%)

Query: 84  NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 143
           N++F Y        LN V   ++  E ++I+G +GSGKST V L+  L E   GQI IDG
Sbjct: 9   NLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDG 68

Query: 144 FPLTDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEF 201
             LT+ ++  +R KIG V Q P  Q +   ++ ++ +G    ++N+ I     +  V+E 
Sbjct: 69  DLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFG----LENKGIPHEEMKERVNE- 123

Query: 202 ILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV 259
            L L  G +   + +   LSGGQKQR+AIA A+   P I++LDEATS LD E    +   
Sbjct: 124 ALEL-VGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKT 182

Query: 260 LHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG 310
           +  +R+D   + TVI I H L  +   DR++V+ +G++       EL  +G
Sbjct: 183 IKGIRDD--YQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRG 231

Length = 279

>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter

 Score =  122 bits (309), Expect = 2e-33
 Identities = 73/236 (30%), Positives = 120/236 (50%), Gaps = 20/236 (8%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           ++F N++  Y        +N++ L I   E + ++G SGSGK+T + ++ RL EP+ G+I
Sbjct: 1   IEFENVTKRYGGGK--KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI 58

Query: 140 YIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEW--AAKQA 196
           +IDG  + + D   LR KIG+V Q+  L   M ++ NI    PK +K     W     + 
Sbjct: 59  FIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIAL-VPKLLK-----WPKEKIRE 112

Query: 197 YVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 254
              E +  +        D     LSGGQ+QR+ +ARA+  DP +LL+DE   ALD     
Sbjct: 113 RADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDP---- 168

Query: 255 YVKGVLHA--LRNDCKTKRTVIVIAHRL-STIKAVDRIVVIDDGRIIEVGNHAELL 307
             +  L     R   +  +T++ + H +    +  DRI ++ +G I++VG   E+L
Sbjct: 169 ITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224

OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242

>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

 Score =  121 bits (306), Expect = 4e-33
 Identities = 67/236 (28%), Positives = 109/236 (46%), Gaps = 24/236 (10%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           ++F N+S  YP       L  V   I   E V + G SG+GKST + L+     P+ G+I
Sbjct: 2   IRFENVSKAYPGGR--EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59

Query: 140 YIDGFPLTDL---DIRWLREKIGFVGQEPQLL-QMDIKSNIMY-----GCPKDVKNEDIE 190
            ++G  L+ L   +I +LR +IG V Q+ +LL    +  N+       G P       + 
Sbjct: 60  LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVS 119

Query: 191 WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 250
                  +     +LP           LSGG++QR+AIARAI+  PA+LL DE T  LD 
Sbjct: 120 EVLDLVGLKHKARALP---------SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDP 170

Query: 251 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVD-RIVVIDDGRIIEVGNHAE 305
           +       ++       +   TV++  H L  +  +  R++ ++DGR++   +   
Sbjct: 171 D---LSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESRGV 223

Length = 223

>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group

 Score =  120 bits (304), Expect = 5e-33
 Identities = 67/210 (31%), Positives = 114/210 (54%), Gaps = 30/210 (14%)

Query: 97  ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG---FPLTDLDIR- 152
           IL+ + LTIE  ++ AI+G SGSGKST +N++  L +   GQ+Y++G    PL       
Sbjct: 13  ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASK 72

Query: 153 WLREKIGFVGQEPQLLQMD-IKSNIMYGC-----PKDVKNEDIEWAAKQ----AYVHEFI 202
           + REK+G++ Q   L++ + ++ N+  G       K  K E  + A ++      + + I
Sbjct: 73  FRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKI 132

Query: 203 LSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHA 262
                 YE       LSGG++QR+A+ARAIL+ P ++L DE T +LD ++   V  +L  
Sbjct: 133 ------YE-------LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLE 179

Query: 263 LRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 292
           L ++    +T+I++ H     K  DR++ +
Sbjct: 180 LNDE---GKTIIIVTHDPEVAKQADRVIEL 206

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206

>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  123 bits (310), Expect = 5e-33
 Identities = 78/227 (34%), Positives = 123/227 (54%), Gaps = 23/227 (10%)

Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD--LDIRWLR 155
           L++V + IE  E V ++G +GSGKST +  L  L +P+ G+I IDG  +TD  + +  +R
Sbjct: 23  LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82

Query: 156 EKIGFVGQEP--QLLQMDIKSNIMYGCPKD--VKNEDIEWAAKQAYVHEFILSLPCGYET 211
           +K+G V Q P  QL +  I+ +I +G P +  +  E+IE   K+A     I+ L   YE 
Sbjct: 83  KKVGLVFQYPEYQLFEETIEKDIAFG-PINLGLSEEEIENRVKRAMN---IVGLD--YED 136

Query: 212 LVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKT 269
             D     LSGGQK+R+AIA  +  +P IL+LDE T+ LD +    +   +  L    + 
Sbjct: 137 YKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHK--EY 194

Query: 270 KRTVIVIAHRLSTI-KAVDRIVVIDDGRII------EVGNHAELLHK 309
             T+I+++H +  + K  DRI+V++ G+        EV    E L  
Sbjct: 195 NMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKEVETLES 241

Length = 287

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score =  121 bits (305), Expect = 6e-33
 Identities = 63/225 (28%), Positives = 111/225 (49%), Gaps = 37/225 (16%)

Query: 84  NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 143
           +++  Y   P   +L  V   ++  E +AIVG +G+GKST +  +L L +P+ G I + G
Sbjct: 4   DLTVSYGGHP---VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFG 60

Query: 144 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI------------MYGCPKDVKNEDIEW 191
            PL        R++IG+V   PQ   +D    I              G  + +   D   
Sbjct: 61  KPLEKE-----RKRIGYV---PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKA- 111

Query: 192 AAKQAYVHEFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALD 249
              +A   E +     G   L D  +  LSGGQ+QR+ +ARA+++DP +LLLDE  + +D
Sbjct: 112 KVDEA--LERV-----GLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVD 164

Query: 250 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVID 293
            +++   + +   LR   +   T++V+ H L  + +  DR+++++
Sbjct: 165 PKTQ---EDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLN 206

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score =  121 bits (307), Expect = 7e-33
 Identities = 67/222 (30%), Positives = 116/222 (52%), Gaps = 23/222 (10%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           ++  N++  Y +RP   +L  + L++E  E+ A++G +G+GKST +  +L L +PS G+I
Sbjct: 5   IEVENLTVSYGNRP---VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI 61

Query: 140 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMD------IKSNIMYGCPKDVKNEDIEWAA 193
            I G P+        R +IG+V   PQ   +D      +K  ++ G              
Sbjct: 62  KIFGKPVRKRR---KRLRIGYV---PQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKK 115

Query: 194 KQAYVHEFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSE 251
            +  V E +  +  G E L D  +  LSGGQKQR+ +ARA+ ++P +LLLDE  + +D  
Sbjct: 116 DKEKVDEALERV--GMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVA 173

Query: 252 SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVI 292
            +  +  +L  LR +    +TV+++ H L  + A  DR++ +
Sbjct: 174 GQKEIYDLLKELRQE---GKTVLMVTHDLGLVMAYFDRVICL 212

Length = 254

>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

 Score =  121 bits (305), Expect = 8e-33
 Identities = 85/222 (38%), Positives = 120/222 (54%), Gaps = 18/222 (8%)

Query: 97  ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI-----YIDG-FPLTDLD 150
           +L+ + L ++  EVVAI+G SGSGK+T +  +  L +P  G I      ID    L+   
Sbjct: 18  VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQK 77

Query: 151 --IRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLP- 206
             IR LR+ +GFV Q   L     +  NI+ G P  VK E  E A  +A   E +  +  
Sbjct: 78  GLIRQLRQHVGFVFQNFNLFPHRTVLENIIEG-PVIVKGEPKEEATARA--RELLAKVGL 134

Query: 207 CGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 266
            G ET      LSGGQ+QR+AIARA+   P ++L DE TSALD E    V  VL+ +R  
Sbjct: 135 AGKETSYPRR-LSGGQQQRVAIARALAMRPEVILFDEPTSALDPE---LVGEVLNTIRQL 190

Query: 267 CKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 307
            + KRT++++ H +S  + V DR + +D GRI+E G    L 
Sbjct: 191 AQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF 232

Length = 250

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score =  117 bits (295), Expect = 4e-32
 Identities = 59/221 (26%), Positives = 100/221 (45%), Gaps = 62/221 (28%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           ++   I+  +     V  L+ V L++   EV A++G +G+GKST + +L  LY+P  G+I
Sbjct: 1   LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI 57

Query: 140 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVH 199
            +DG            +++ F                    P+D +   I      A V+
Sbjct: 58  LVDG------------KEVSFAS------------------PRDARRAGI------AMVY 81

Query: 200 EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSAL-DSESEHYVKG 258
           +                 LS G++Q + IARA+ R+  +L+LDE T+AL  +E E     
Sbjct: 82  Q-----------------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVER---- 120

Query: 259 VLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRII 298
           +   +R        VI I+HRL  +  + DR+ V+ DGR++
Sbjct: 121 LFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score =  124 bits (313), Expect = 7e-32
 Identities = 70/261 (26%), Positives = 112/261 (42%), Gaps = 50/261 (19%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL----YEPS 135
           V+ + + F       VP +  V   +E  E++ IVG SGSGKST    L+ L       +
Sbjct: 8   VENLTVEFATDGGR-VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRIT 66

Query: 136 DGQIYIDGFPLTDLDIRWLRE----KIGFVGQEP-QLL--QMDIKSNI-------MYGCP 181
            G++ +DG  L  L  R +R+    +I  + Q+P   L   M I   I         G  
Sbjct: 67  SGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSR 126

Query: 182 KDVKNEDIEW---------AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 232
            + +   +E            +  Y H+                 LSGG +QR+ IA A+
Sbjct: 127 AEARKRAVELLEQVGLPDPERRDRYPHQ-----------------LSGGMRQRVMIAMAL 169

Query: 233 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRT-VIVIAHRLSTIKAV-DRIV 290
              P +L+ DE T+ALD  ++     +L  L++  +     V+ I H L  +  + DR+V
Sbjct: 170 ALKPKLLIADEPTTALDVTTQ---AQILDLLKDLQRELGMAVLFITHDLGVVAELADRVV 226

Query: 291 VIDDGRIIEVGNHAELLHKGR 311
           V+  G I+E G   E+L   +
Sbjct: 227 VMYKGEIVETGPTEEILSNPQ 247

Length = 539

>gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR

 Score =  119 bits (299), Expect = 8e-32
 Identities = 78/247 (31%), Positives = 134/247 (54%), Gaps = 12/247 (4%)

Query: 76  LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 135
           L G ++  ++   Y +    P+L HV   I+  + V I G +GSGKS+      R+ +  
Sbjct: 16  LGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIF 74

Query: 136 DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQ 195
           DG+I IDG  ++ L +  LR ++  + Q+P L    I+ N+    P+    +D  W A +
Sbjct: 75  DGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLD---PECKCTDDRLWEALE 131

Query: 196 -AYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 252
            A +   + SLP G + +V +  +  S GQ+Q   +ARA +R  +IL++DEAT+++D  +
Sbjct: 132 IAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMAT 191

Query: 253 EHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL-HKGR 311
           E+ ++ V+     D    RTV+ IAHR+STI   D ++V+  G ++E      LL  +  
Sbjct: 192 ENILQKVVMTAFAD----RTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDG 247

Query: 312 LYAKLVK 318
           ++A LV+
Sbjct: 248 VFASLVR 254

The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257

>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score =  120 bits (303), Expect = 1e-31
 Identities = 78/229 (34%), Positives = 120/229 (52%), Gaps = 18/229 (7%)

Query: 84  NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 143
           N+   + +      L+ + L I++ E+VA++G SG+GKST + ++  L  P  G+I ++G
Sbjct: 7   NVKKRFGAFGA---LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNG 63

Query: 144 FPLTDLDIRWLRE-KIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEF 201
             L D+    +R+ K+GFV Q   L   M +  NI +G    V+ E    A  +A V E 
Sbjct: 64  RVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLK--VRKERPSEAEIRARVEE- 120

Query: 202 ILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV 259
           +L L    E L D     LSGGQ+QR+A+ARA+  +P +LLLDE   ALD       K +
Sbjct: 121 LLRL-VQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALD---AKVRKEL 176

Query: 260 LHALRNDC--KTKRTVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGNHAE 305
              LR     +   T + + H     ++  DR+VV++ GRI +VG   E
Sbjct: 177 RRWLR-KLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDE 224

Length = 345

>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE

 Score =  117 bits (295), Expect = 2e-31
 Identities = 75/227 (33%), Positives = 111/227 (48%), Gaps = 24/227 (10%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           ++F N+S  YP    V  L+ V L I   E + + G SG+GK+T + LL     PS GQ+
Sbjct: 2   IEFHNVSKAYP--GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59

Query: 140 YIDGFPLTDL---DIRWLREKIGFVGQEPQLL-QMDIKSNIMY-----GCPKDVKNEDIE 190
            I G  +  L    +  LR +IG V Q+ +LL    +  N+       G  +      + 
Sbjct: 60  RIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVG 119

Query: 191 WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 250
            A +Q  +     + P         + LSGG++QR+AIARAI+  P +LL DE T  LD 
Sbjct: 120 AALRQVGLEHKADAFP---------EQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDP 170

Query: 251 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVD-RIVVIDDGR 296
                 + +L  L+   K   TVIV  H LS +  V  R++++DDGR
Sbjct: 171 ---DLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214

>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score =  116 bits (292), Expect = 4e-31
 Identities = 61/210 (29%), Positives = 111/210 (52%), Gaps = 12/210 (5%)

Query: 94  TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW 153
              ILN++ L++ A E +AI G SG GKST + ++  L  P+ G +  +G  ++ L    
Sbjct: 15  DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEA 74

Query: 154 LREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLV 213
            R+++ +  Q P L    ++ N+++  P  ++N   + AA    +  F L      ++++
Sbjct: 75  YRQQVSYCAQTPALFGDTVEDNLIF--PWQIRNRRPDRAAALDLLARFALP-----DSIL 127

Query: 214 DDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 271
             ++  LSGG+KQRIA+ R +   P ILLLDE TSALD  ++  ++ ++H    +     
Sbjct: 128 TKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVRE--QNV 185

Query: 272 TVIVIAH-RLSTIKAVDRIVVIDDGRIIEV 300
            V+ I H +   I+  D+++ +  G   E+
Sbjct: 186 AVLWITHDKDQAIRHADKVITLQPGHAGEM 215

Length = 223

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score =  115 bits (290), Expect = 4e-31
 Identities = 69/228 (30%), Positives = 111/228 (48%), Gaps = 47/228 (20%)

Query: 82  FVNISF---HYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLL--LRLYEPSD 136
           F N++      PS+    +L +V    +  E+ AI+G SG+GKST +N L   R      
Sbjct: 6   FRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVS 65

Query: 137 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQ 195
           G++ I+G PL   D R  R+ IG+V Q+  L   + ++  +M+             AAK 
Sbjct: 66  GEVLINGRPL---DKRSFRKIIGYVPQDDILHPTLTVRETLMF-------------AAK- 108

Query: 196 AYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHY 255
                    L            LSGG+++R++IA  ++ +P++L LDE TS LDS S   
Sbjct: 109 ---------LRG----------LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQ 149

Query: 256 VKGVLHALRNDCKTKRTVIVIAHRLST--IKAVDRIVVIDDGRIIEVG 301
              V+  LR    T RT+I   H+ S+   +  D+++++  GR+I  G
Sbjct: 150 ---VMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  117 bits (295), Expect = 4e-31
 Identities = 77/251 (30%), Positives = 120/251 (47%), Gaps = 43/251 (17%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           ++  N+S  YP       L  V L I   E+VAI+G SG+GKST +  L  L +P+ G+I
Sbjct: 4   IEVKNLSKTYPGG--HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61

Query: 140 YIDGFPLTDL---DIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQ 195
             +G  +T L   ++R LR  IG + Q+  L+  + +  N++ G              + 
Sbjct: 62  LFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLG--------------RL 107

Query: 196 AYVHEF--ILSLPCGYETLVDDDL----------------LSGGQKQRIAIARAILRDPA 237
            Y   +  +  L    +     D                 LSGGQ+QR+AIARA+++ P 
Sbjct: 108 GYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPK 167

Query: 238 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKR-TVIVIAHRLSTIKA-VDRIVVIDDG 295
           I+L DE  ++LD ES      V+  L++  +    TVIV  H++   K   DRI+ +  G
Sbjct: 168 IILADEPVASLDPESAKK---VMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAG 224

Query: 296 RIIEVGNHAEL 306
           RI+  G  +EL
Sbjct: 225 RIVFDGPASEL 235

Length = 258

>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score =  118 bits (298), Expect = 4e-31
 Identities = 68/259 (26%), Positives = 108/259 (41%), Gaps = 55/259 (21%)

Query: 83  VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDG 137
           +++SF   +   V  ++ V   ++  E++ IVG SGSGKS     ++ L          G
Sbjct: 7   LSVSFPTDAG-VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGG 65

Query: 138 QIYIDGFPLTDLD------IRWLREKIGFVGQEPQL-LQ--MDIKSNIMYGCPKDVKNED 188
           +I  DG  L  L       IR   ++I  + Q+P   L   M I   I        K   
Sbjct: 66  EILFDGKDLLSLSEKELRKIRG--KEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLS 123

Query: 189 IEWAAKQA------------------YVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 230
            + A ++A                  Y HE                 LSGG +QR+ IA 
Sbjct: 124 KKEAKERAIELLELVGIPDPERRLKSYPHE-----------------LSGGMRQRVMIAM 166

Query: 231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRI 289
           A+  +P +L+ DE T+ALD   +  +  +L  L+   +    +I+I H L  +  + DR+
Sbjct: 167 ALALNPKLLIADEPTTALDVTVQAQILDLLKELQR--EKGTALILITHDLGVVAEIADRV 224

Query: 290 VVIDDGRIIEVGNHAELLH 308
            V+  GRI+E G   E+  
Sbjct: 225 AVMYAGRIVEEGPVEEIFK 243

Length = 316

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score =  116 bits (293), Expect = 5e-31
 Identities = 80/252 (31%), Positives = 122/252 (48%), Gaps = 45/252 (17%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           ++  N+S  YP+      L ++ L I   E VAI+G SG+GKST +  + RL EPS G I
Sbjct: 2   LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59

Query: 140 YIDGFPLTDL---DIRWLREKIGFVGQEPQLL-QMDIKSNIMYG----------CPKDVK 185
            ++G  +T L    +R LR +IG + Q   L+ ++ +  N+++G                
Sbjct: 60  LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFS 119

Query: 186 NEDIEWA---------AKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 236
            ED E A         A +AY                  D LSGGQ+QR+AIARA+ + P
Sbjct: 120 EEDKERALSALERVGLADKAYQRA---------------DQLSGGQQQRVAIARALAQQP 164

Query: 237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKR-TVIVIAHRLSTIKA-VDRIVVIDD 294
            ++L DE  ++LD ++      V+  L+   K    TVI+  H++   K   DRIV +  
Sbjct: 165 DLILADEPIASLDPKTSKQ---VMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKA 221

Query: 295 GRIIEVGNHAEL 306
           G I+  G  +EL
Sbjct: 222 GEIVFDGAPSEL 233

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein

 Score =  116 bits (292), Expect = 5e-31
 Identities = 73/212 (34%), Positives = 118/212 (55%), Gaps = 12/212 (5%)

Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 157
           L+ V L +    +VA++G SGSGKST + ++  L +P  G+I ++G   T +  R    K
Sbjct: 16  LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHAR--DRK 73

Query: 158 IGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD- 215
           IGFV Q   L + + ++ NI +G    ++      A  +A V E +L L    E L D  
Sbjct: 74  IGFVFQHYALFKHLTVRDNIAFG----LEIRKHPKAKIKARVEE-LLEL-VQLEGLGDRY 127

Query: 216 -DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 274
            + LSGGQ+QR+A+ARA+  +P +LLLDE   ALD++    ++  L  L ++     TV 
Sbjct: 128 PNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVT-TVF 186

Query: 275 VIAHRLSTIKAVDRIVVIDDGRIIEVGNHAEL 306
           V   +   ++  DRIVV+ +G+I ++G+  E+
Sbjct: 187 VTHDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218

[Transport and binding proteins, Anions]. Length = 237

>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK

 Score =  115 bits (289), Expect = 9e-31
 Identities = 75/231 (32%), Positives = 120/231 (51%), Gaps = 27/231 (11%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           V+  N++  + +   +  LN   L I   E V ++G SG GK+T + ++  L EP+ G+I
Sbjct: 1   VELENVTKRFGNVTALDDLN---LDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI 57

Query: 140 YIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGC-----PKDVKNEDIEWAA 193
           YI G  +TDL  +     I  V Q   L   M +  NI +G      PKD  +E +   A
Sbjct: 58  YIGGRDVTDLPPK--DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVA 115

Query: 194 KQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 251
           +       +L +    E L+D     LSGGQ+QR+A+ RAI+R+P + L+DE  S LD++
Sbjct: 116 E-------LLQI----EHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAK 164

Query: 252 SEHYVKGVLHALRNDCKTKRTVIVIAH-RLSTIKAVDRIVVIDDGRIIEVG 301
               ++  L  L+    T  T I + H ++  +   DRI V++DG+I ++G
Sbjct: 165 LRVQMRAELKRLQQRLGT--TTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213

>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter

 Score =  115 bits (290), Expect = 9e-31
 Identities = 70/216 (32%), Positives = 114/216 (52%), Gaps = 14/216 (6%)

Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 157
           L +V L +E  +   I+G +GSGKS  +  +    +P  G+I ++G  +T+L     +  
Sbjct: 15  LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPE--KRD 72

Query: 158 IGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD 216
           I +V Q   L   M +  NI YG  K  K +  E   K   V E    L  G + L++  
Sbjct: 73  ISYVPQNYALFPHMTVYKNIAYGL-KKRKVDKKEIERK---VLEIAEML--GIDHLLNRK 126

Query: 217 --LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 274
              LSGG++QR+AIARA++ +P ILLLDE  SALD  ++  ++  L  +R +     TV+
Sbjct: 127 PETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGV--TVL 184

Query: 275 VIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHK 309
            + H      A+ D++ ++ +G++I+VG   E+  K
Sbjct: 185 HVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220

Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system

 Score =  114 bits (288), Expect = 1e-30
 Identities = 70/229 (30%), Positives = 108/229 (47%), Gaps = 25/229 (10%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           V+   I F Y  +P      H  LT    E+ AIVG SGSGKST +NL+     P  G++
Sbjct: 1   VRLDKIRFSYGEQPM-----HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV 55

Query: 140 YIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCP-----KDVKNEDIEWAA 193
            I+G  +T          +  + QE  L   + ++ N+  G            + IE A 
Sbjct: 56  LINGVDVTAAPPA--DRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVAL 113

Query: 194 KQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 253
            +  +      LP           LSGG++QR+A+AR ++RD  +LLLDE  +ALD    
Sbjct: 114 ARVGLAGLEKRLP---------GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALR 164

Query: 254 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 301
             +  ++  L    +TK TV+++ H+    K +  R+V +D+GRI   G
Sbjct: 165 AEMLDLVLDLHA--ETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211

Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter

 Score =  114 bits (287), Expect = 2e-30
 Identities = 68/228 (29%), Positives = 117/228 (51%), Gaps = 24/228 (10%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           ++F+N++  YP       L+ + ++I A E V +VG SG+GKST + L+ +   P+ G I
Sbjct: 1   IEFINVTKTYP--NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI 58

Query: 140 YIDGFPLTDLD---IRWLREKIGFVGQEPQLL-QMDIKSNIMY-----GCPKDVKNEDIE 190
            ++G  ++DL    I +LR KIG V Q+ +LL   ++  N+ +     G P     + + 
Sbjct: 59  RVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVP 118

Query: 191 WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 250
            A +   +     +LP           LSGG++QR+AIARAI+  P IL+ DE T  LD 
Sbjct: 119 AALELVGLSHKHRALPAE---------LSGGEQQRVAIARAIVNSPTILIADEPTGNLDP 169

Query: 251 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVD-RIVVIDDGRI 297
           +       +++ L+   K   TV+V  H    +     R++ ++ G++
Sbjct: 170 D---TTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214

FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214

>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional

 Score =  120 bits (302), Expect = 4e-30
 Identities = 76/225 (33%), Positives = 109/225 (48%), Gaps = 21/225 (9%)

Query: 84  NISFHYPS-RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 142
           +I   YPS    V +L  + L I A E+VAIVG SGSGKST +N+L  L +P+ G   + 
Sbjct: 9   DIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVA 68

Query: 143 GFPLTDLD----IRWLREKIGFVGQEPQLL-QMDIKSNI----MYGCPKDVKNEDIEWAA 193
           G  +  LD     +  RE  GF+ Q   LL  +    N+    +Y          +E   
Sbjct: 69  GQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA--------GLERKQ 120

Query: 194 KQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 253
           +     E +  L            LSGGQ+QR++IARA++    ++L DE T ALDS S 
Sbjct: 121 RLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSG 180

Query: 254 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRII 298
             V  +LH LR+      TVI++ H        +R++ I DG I+
Sbjct: 181 EEVMAILHQLRDR---GHTVIIVTHDPQVAAQAERVIEIRDGEIV 222

Length = 648

>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system

 Score =  113 bits (284), Expect = 5e-30
 Identities = 68/201 (33%), Positives = 105/201 (52%), Gaps = 18/201 (8%)

Query: 109 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD----LDIRWLREKIGFVGQE 164
           EV  I G SG+GKST +  +  L +P  G I ++G  L D    +++   + KIG V Q+
Sbjct: 24  EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQ 83

Query: 165 PQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGG 221
             L   ++++ N+ +G  +    ED      +  V E +  L  G + L++     LSGG
Sbjct: 84  YALFPHLNVRENLAFGLKRKRNRED------RISVDELLDLL--GLDHLLNRYPAQLSGG 135

Query: 222 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS 281
           +KQR+A+ARA+   P +LLLDE  SALD      +   L  ++ +      VI + H LS
Sbjct: 136 EKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNI--PVIFVTHDLS 193

Query: 282 TI-KAVDRIVVIDDGRIIEVG 301
                 DRIVV++DGR+  +G
Sbjct: 194 EAEYLADRIVVMEDGRLQYIG 214

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214

>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter

 Score =  113 bits (285), Expect = 7e-30
 Identities = 77/230 (33%), Positives = 122/230 (53%), Gaps = 11/230 (4%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           ++  N+S  +        L+ V L I + E+VA++G SGSGK+T + L+  L  P  G I
Sbjct: 3   IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTI 59

Query: 140 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYV 198
              G   TD+ ++     +GFV Q   L + M +  N+ +G     ++E    A  +A V
Sbjct: 60  LFGGEDATDVPVQ--ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKV 117

Query: 199 HEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 256
           HE +L L    + L D     LSGGQ+QR+A+ARA+  +P +LLLDE   ALD++    +
Sbjct: 118 HE-LLKL-VQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKEL 175

Query: 257 KGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAEL 306
           +  L  L ++     TV V   +   ++  DR+VV++ GRI +VG   E+
Sbjct: 176 RRWLRRLHDELHVT-TVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV 224

Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239

>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional

 Score =  119 bits (300), Expect = 9e-30
 Identities = 88/303 (29%), Positives = 156/303 (51%), Gaps = 24/303 (7%)

Query: 30   LIYATWRMVDNLSSLLQ-------SIGATEKVFQLIDLLPSNQFLSEG---VKLQRLMGH 79
            L+  T  +   LS +L+       S+ + E+V   IDL      + E    V      G 
Sbjct: 1175 LLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGS 1234

Query: 80   VQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 138
            ++F ++   Y  RP +P +L+ +   +  +E V +VG +G+GKS+ +N L R+ E   G+
Sbjct: 1235 IKFEDVHLRY--RPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGR 1292

Query: 139  IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAA-KQAY 197
            I ID   +    +  LR  +  + Q P L    ++ NI    P    N+   W A ++A+
Sbjct: 1293 IMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNID---PFSEHNDADLWEALERAH 1349

Query: 198  VHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHY 255
            + + I   P G +  V +  +  S GQ+Q +++ARA+LR   IL+LDEAT+++D  ++  
Sbjct: 1350 IKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSL 1409

Query: 256  VKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK-GRLYA 314
            ++  +      C    T++VIAHRL+TI   D+I+V+  G+++E  +  ELL +    + 
Sbjct: 1410 IQRTIREEFKSC----TMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFF 1465

Query: 315  KLV 317
            ++V
Sbjct: 1466 RMV 1468

Length = 1495

>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  114 bits (286), Expect = 9e-30
 Identities = 71/238 (29%), Positives = 120/238 (50%), Gaps = 19/238 (7%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           + F N+SF Y S  +   L  V   I   +  +IVG +GSGKST   L++ + +   G+I
Sbjct: 8   IVFKNVSFQYQSDASF-TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI 66

Query: 140 YIDGFPLTDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYG-----CPKDVKNEDIEWA 192
           + +   +TD +   LR+ IG V Q P  Q +   +K ++ +G      P D  +  +  A
Sbjct: 67  FYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEA 126

Query: 193 AKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 252
            KQ  + E     P         + LSGGQKQR+AIA  +  +P++++LDEATS LD ++
Sbjct: 127 LKQVDMLERADYEP---------NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDA 177

Query: 253 EHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG 310
              +  ++  ++++     T+I I H LS     D ++V++ G + + G   E+    
Sbjct: 178 RQNLLDLVRKVKSEHNI--TIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHA 233

Length = 269

>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

 Score =  112 bits (283), Expect = 1e-29
 Identities = 74/213 (34%), Positives = 109/213 (51%), Gaps = 22/213 (10%)

Query: 103 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG 162
           LT+ A E+VAI+G SG+GKST +NL+     P+ G+I I+G   T          +  + 
Sbjct: 20  LTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVSMLF 77

Query: 163 QEPQLL-QMDIKSNIMYGCPKDVK-----NEDIEWAAKQAYVHEFILSLPCGYETLVDDD 216
           QE  L   + +  NI  G    +K      E +E AA Q  +  F+  LP          
Sbjct: 78  QENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP---------G 128

Query: 217 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC-KTKRTVIV 275
            LSGGQ+QR+A+AR ++R+  ILLLDE  SALD         +L  +   C + K T+++
Sbjct: 129 ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRA---EMLALVSQLCDERKMTLLM 185

Query: 276 IAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 307
           + H       + DR+V +D+GRI   G+  ELL
Sbjct: 186 VTHHPEDAARIADRVVFLDNGRIAAQGSTQELL 218

Length = 231

>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional

 Score =  111 bits (280), Expect = 6e-29
 Identities = 86/264 (32%), Positives = 126/264 (47%), Gaps = 46/264 (17%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--P--- 134
           +Q  N++F+Y        L ++ L I  N+V A +G SG GKST +    R+YE  P   
Sbjct: 14  IQVRNLNFYYGKFHA---LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQR 70

Query: 135 SDGQIYIDGFPL--TDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC------PKDVKN 186
           ++G+I +DG  +     DI  LR K+G V Q+P    M I  NI +G        +   +
Sbjct: 71  AEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMD 130

Query: 187 EDIEWAAKQAYV-HEFILSLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAIL 239
           E +EWA  +A + +E            V D L      LSGGQ+QR+ IAR I   P +L
Sbjct: 131 ERVEWALTKAALWNE------------VKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVL 178

Query: 240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRII 298
           LLDE  SALD  S   ++ ++  L    K   TV+++ H +       D    +  G +I
Sbjct: 179 LLDEPCSALDPISTGRIEELITEL----KQDYTVVIVTHNMQQAARCSDYTAFMYLGELI 234

Query: 299 EVGNHAELLHKGRLYAKLVKRQTE 322
           E GN         ++ K  K+QTE
Sbjct: 235 EFGNTD------TIFTKPAKKQTE 252

Length = 260

>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional

 Score =  111 bits (279), Expect = 6e-29
 Identities = 76/233 (32%), Positives = 121/233 (51%), Gaps = 37/233 (15%)

Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--PS---DGQIYIDGFPL--TDLD 150
           L  + L IE N+V A++G SG GKSTF+  L R+ +  PS   +G++ +DG  +  +D+D
Sbjct: 19  LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78

Query: 151 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-------KDVKNEDIEWAAKQAYVHEFIL 203
           +  LR+++G V Q+P    M I  N+ YG P       K   +E +E + K A + +   
Sbjct: 79  VNQLRKRVGMVFQQPNPFPMSIYDNVAYG-PRTHGIKDKKKLDEIVEKSLKGAALWD--- 134

Query: 204 SLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 257
                    V D L      LSGGQ+QR+ IARA+  +P +LL+DE TSALD  S   ++
Sbjct: 135 --------EVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIE 186

Query: 258 GVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHK 309
                L  + K   T++++ H +     + D+     +G I+E G+  +L   
Sbjct: 187 ----ELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFTN 235

Length = 250

>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter

 Score =  107 bits (268), Expect = 8e-29
 Identities = 48/127 (37%), Positives = 74/127 (58%), Gaps = 10/127 (7%)

Query: 122 STFVNLLLRLYEPSDGQIYIDGFPLTDL-DIRWLREKIGFVGQEPQL-LQMDIKSNIMYG 179
           ST + L+  L +P+ G I +DG   T L   + LR++IG V Q+PQL  ++ ++ N+ +G
Sbjct: 1   STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60

Query: 180 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 239
                 +   E A ++  + +F+   P G         LSGGQKQR+AIARA+L+ P +L
Sbjct: 61  LRDKEADARAEEALERVGLPDFLDREPVGT--------LSGGQKQRVAIARALLKKPKLL 112

Query: 240 LLDEATS 246
           LLDE T+
Sbjct: 113 LLDEPTA 119

ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119

>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  111 bits (279), Expect = 9e-29
 Identities = 73/244 (29%), Positives = 122/244 (50%), Gaps = 34/244 (13%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           ++   ++  +  R    IL+ V L +   E++AI+G SGSGKST + L+L L  P  G+I
Sbjct: 9   IEVRGVTKSFGDRV---ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65

Query: 140 YIDGFPLTDL---DIRWLREKIGFVGQEPQLL-QMDIKSNIMY------GCPKDVKNEDI 189
            IDG  +  L   ++  +R+++G + Q+  L   + +  N+ +        P+ +  E +
Sbjct: 66  LIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELV 125

Query: 190 EWAAKQAYVHEFILSL-PCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSAL 248
               +   +      L P   E       LSGG ++R+A+ARAI  DP +L LDE TS L
Sbjct: 126 LMKLELVGLRGAAADLYP--SE-------LSGGMRKRVALARAIALDPELLFLDEPTSGL 176

Query: 249 D----SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNH 303
           D       +  ++ +  AL        TVI++ H L ++  + DR+ V+ DG++I  G  
Sbjct: 177 DPISAGVIDELIRELNDALGL------TVIMVTHDLDSLLTIADRVAVLADGKVIAEGTP 230

Query: 304 AELL 307
            ELL
Sbjct: 231 EELL 234

Length = 263

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score =  110 bits (276), Expect = 1e-28
 Identities = 66/234 (28%), Positives = 109/234 (46%), Gaps = 23/234 (9%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           ++  N+S  Y        L+ V L I+  E   ++G SG GK+T + L+     P+ G+I
Sbjct: 1   IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI 57

Query: 140 YIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYG-----CPKDVKNEDIEWAA 193
            +DG  +T+L     +  +  V Q   L   + +  NI +G      PK    E +  A 
Sbjct: 58  LLDGKDITNLPPH--KRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEAL 115

Query: 194 KQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 253
               +  +    P           LSGGQ+QR+AIARA++ +P +LLLDE   ALD +  
Sbjct: 116 DLVQLEGYANRKP---------SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLR 166

Query: 254 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAEL 306
             ++  L  L+ +     T + + H       + DRI V++ G+I ++G   E+
Sbjct: 167 KDMQLELKRLQKELGI--TFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEI 218

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  110 bits (275), Expect = 3e-28
 Identities = 79/226 (34%), Positives = 120/226 (53%), Gaps = 8/226 (3%)

Query: 84  NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 143
           N+ F Y     V  LN V  +I   E V+I+G +GSGKST   L+  L+E  +G++ IDG
Sbjct: 9   NLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDG 68

Query: 144 FPLTDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEF 201
             LT  ++  LR KIG V Q P  Q +   ++ ++ +G    ++N+ I        V E 
Sbjct: 69  ELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFG----MENQGIPREEMIKRVDEA 124

Query: 202 ILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLH 261
           +L++        +   LSGGQKQR+A+A  I   P I++LDE+TS LD      +  V+H
Sbjct: 125 LLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIH 184

Query: 262 ALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 307
            ++   K + TV+ I H L    + DRI+V+  G II+    +EL 
Sbjct: 185 EIKE--KYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELF 228

Length = 277

>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional

 Score =  112 bits (280), Expect = 4e-28
 Identities = 79/217 (36%), Positives = 120/217 (55%), Gaps = 22/217 (10%)

Query: 103 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF---PLTDLDIRWL-REKI 158
           L IE  E+  I+GLSGSGKST V LL RL EP+ GQ+ IDG     ++D ++R + R+KI
Sbjct: 49  LAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKI 108

Query: 159 GFVGQEPQLL-QMDIKSNIMY-----GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETL 212
             V Q   L+  M +  N  +     G   + + E    A +Q  +  +  S P      
Sbjct: 109 AMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP------ 162

Query: 213 VDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRT 272
              D LSGG +QR+ +ARA+  +P ILL+DEA SALD      ++  L  L+   K +RT
Sbjct: 163 ---DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQ--AKHQRT 217

Query: 273 VIVIAHRL-STIKAVDRIVVIDDGRIIEVGNHAELLH 308
           ++ I+H L   ++  DRI ++ +G +++VG   E+L+
Sbjct: 218 IVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILN 254

Length = 400

>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  107 bits (270), Expect = 7e-28
 Identities = 65/210 (30%), Positives = 102/210 (48%), Gaps = 11/210 (5%)

Query: 95  VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD---- 150
           + IL  V L ++  E VAIVG SGSGKST + +L  L +PS G++ + G PL  LD    
Sbjct: 23  LSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDAR 82

Query: 151 IRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGY 209
                  +GFV Q   L+  +    N+    P +++ E    +   A     + ++  G 
Sbjct: 83  AALRARHVGFVFQSFHLIPNLTALENVA--LPLELRGESSADSRAGA--KALLEAVGLGK 138

Query: 210 ETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKT 269
                   LSGG++QR+A+ARA    P +L  DE T  LD  +   +  +L AL  +  T
Sbjct: 139 RLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGT 198

Query: 270 KRTVIVIAHRLSTIKAVDRIVVIDDGRIIE 299
             T++++ H        DR + +  GR++E
Sbjct: 199 --TLVLVTHDPQLAARCDRQLRLRSGRLVE 226

Length = 228

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score =  108 bits (271), Expect = 7e-28
 Identities = 75/231 (32%), Positives = 115/231 (49%), Gaps = 23/231 (9%)

Query: 84  NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 143
            +SF Y +R     L+ V  T+     VA++G +G+GKST  +LL RLY   +GQI + G
Sbjct: 6   GLSFRYGARRA---LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAG 62

Query: 144 FPLTDLDIRWLREKIGFVGQEPQL-LQMDIKSNIMY-----GCPKDVKNEDIEWAAKQAY 197
             L       L  ++G V Q+P L L + ++ N+ Y     G  +      I     +  
Sbjct: 63  HDLRRAPRAALA-RLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELLAR-- 119

Query: 198 VHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 257
                L L    +  V +  L+GG ++R+ IARA+L  PA+LLLDE T  LD  S   + 
Sbjct: 120 -----LGLAERADDKVRE--LNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIT 172

Query: 258 GVLHALRNDCKTKR-TVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 307
             + AL    + +  +V+   H +  I+A DR+VV+  GR++  G  AEL 
Sbjct: 173 AHVRAL---ARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELR 220

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein

 Score =  110 bits (277), Expect = 8e-28
 Identities = 67/221 (30%), Positives = 111/221 (50%), Gaps = 20/221 (9%)

Query: 101 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD----LDIRWLRE 156
              T+    V AI G SGSGK+T + L+  L  P +G+I ++G  L D    + +   + 
Sbjct: 16  ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75

Query: 157 KIGFVGQEPQLL-QMDIKSNIMYGCPK-DVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 214
           +IG+V QE +L   + ++ N+ YG  +       I +          ++ L  G   L+ 
Sbjct: 76  RIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFER--------VIEL-LGIGHLLG 126

Query: 215 D--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRT 272
                LSGG+KQR+AI RA+L  P +LL+DE  +ALD   ++ +   L  L  +      
Sbjct: 127 RLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAE--FGIP 184

Query: 273 VIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELLHKGRL 312
           ++ ++H L  + +  DR+VV++DGR+   G  AE+     L
Sbjct: 185 ILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDL 225

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score =  112 bits (282), Expect = 9e-28
 Identities = 65/218 (29%), Positives = 109/218 (50%), Gaps = 21/218 (9%)

Query: 93  PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR 152
           P V   + V L+++  E+ A++G +G+GKST + +L  LY+P  G+I +DG       +R
Sbjct: 15  PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKE-----VR 69

Query: 153 W------LREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFI--L 203
                  +R  IG V Q   L+  + +  NI+ G     K   I+    +A + E     
Sbjct: 70  IKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPS-KGGLIDRRQARARIKELSERY 128

Query: 204 SLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 263
            LP   +  V D  LS G++QR+ I +A+ R   +L+LDE T+ L +  E     +   L
Sbjct: 129 GLPVDPDAKVAD--LSVGEQQRVEILKALYRGARLLILDEPTAVL-TPQE--ADELFEIL 183

Query: 264 RNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEV 300
           R      +T+I I H+L  + A+ DR+ V+  G+++  
Sbjct: 184 RRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGT 221

Length = 501

>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system

 Score =  106 bits (267), Expect = 1e-27
 Identities = 68/219 (31%), Positives = 109/219 (49%), Gaps = 21/219 (9%)

Query: 84  NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 143
           NISF Y       IL+ + L + A E++A+ G +G+GK+T   +L  L + S G I ++G
Sbjct: 4   NISFSYKKGTE--ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNG 61

Query: 144 FPLTDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHE 200
                +  +  R+ IG+V Q+   QL    ++  ++ G    D  NE  E   K   ++ 
Sbjct: 62  ---KPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYA 118

Query: 201 FILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL 260
                P           LSGGQKQR+AIA A+L    +L+ DE TS LD ++   ++ V 
Sbjct: 119 LKERHPLS---------LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKN---MERVG 166

Query: 261 HALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRII 298
             +R      + VIVI H    + K  DR++++ +G I+
Sbjct: 167 ELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205

Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205

>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  107 bits (269), Expect = 2e-27
 Identities = 74/247 (29%), Positives = 126/247 (51%), Gaps = 32/247 (12%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--PS-- 135
           ++  N S +Y  +  V    +V + I  N++ AI+G SG GK+T +  + R+ +  P   
Sbjct: 4   IEIENFSAYYGEKKAV---KNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR 60

Query: 136 -DGQIYIDGFPLTD--LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP------KDVKN 186
            +G+IY  G  + D  LD+   R+K+G V Q+P    M I  N+ +G        K   +
Sbjct: 61  VEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLD 120

Query: 187 EDIEWAAKQAYVHEFI---LSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDE 243
             +E + K+A + + +   L+ P G         LSGGQ+QR+ IARA+  +P ++LLDE
Sbjct: 121 RIVEESLKKAALWDEVKSELNKP-GTR-------LSGGQQQRLCIARALAVEPEVILLDE 172

Query: 244 ATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGN 302
            TSALD  +   ++ +L  L        T++++ H +   I+  D I  +  G +IE G 
Sbjct: 173 PTSALDPIATQRIEKLLEELSE----NYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGP 228

Query: 303 HAELLHK 309
             E++ +
Sbjct: 229 TREIVER 235

Length = 250

>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter

 Score =  106 bits (268), Expect = 2e-27
 Identities = 61/232 (26%), Positives = 107/232 (46%), Gaps = 41/232 (17%)

Query: 95  VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL---DI 151
             IL  V LT+   E+VA++G +G+GK+T +  ++ L  P  G I  DG  +T L   + 
Sbjct: 13  SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHER 72

Query: 152 RWLREKIGFVGQEPQLL-QMDIKSNIM---YGCPKDVKNEDIEWAAKQAYVHEFILSL-- 205
              R  IG+V +  ++  ++ ++ N++   Y   +  +   +E           +  L  
Sbjct: 73  --ARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLER----------VYELFP 120

Query: 206 --------PCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 257
                     G         LSGG++Q +AIARA++  P +LLLDE +  L   +   V+
Sbjct: 121 RLKERRKQLAG--------TLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVE 169

Query: 258 GVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLH 308
            +  A+R       T++++         + DR  V++ GR++  G  AELL 
Sbjct: 170 EIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221

LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score =  107 bits (268), Expect = 2e-27
 Identities = 63/230 (27%), Positives = 112/230 (48%), Gaps = 18/230 (7%)

Query: 88  HYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT 147
            Y     V  +  V    E  E+  ++G +G+GK+T + ++  L  P  G++ IDG    
Sbjct: 10  SYG--SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTV 67

Query: 148 DLDIRWLREKIGFV-GQEPQLLQMDIKSNIMY-GCPKDVKNEDIEWAAKQAYVHEFILSL 205
             D  ++R KIG + G+     ++  + N+ Y      +  ++I+     A + E    L
Sbjct: 68  R-DPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIK-----ARIAELSKRL 121

Query: 206 PCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 263
                  +D  +   S G KQ++AIARA++ DP+IL+LDE TS LD  +       +  L
Sbjct: 122 --QLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQL 179

Query: 264 RNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHKGRL 312
           +N+    R VI  +H +  ++A+ DR++V+  G ++  G+   L  +  L
Sbjct: 180 KNE---GRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTVL 226

Length = 245

>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  107 bits (268), Expect = 2e-27
 Identities = 87/257 (33%), Positives = 122/257 (47%), Gaps = 31/257 (12%)

Query: 79  HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPS- 135
           H    N++  Y S+    IL  + L I   EV A +G SG GKSTF+    R+  + P+ 
Sbjct: 5   HASVKNLNLWYGSKQ---ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNC 61

Query: 136 --DGQIYIDGFPL--TDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK---DVKNED 188
              G++ IDG  +   D ++  LR K+G V Q+P      I  N+ YG PK     KN+ 
Sbjct: 62  KVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYG-PKLHGLAKNKK 120

Query: 189 IEWAAKQAYVHEFILSLPCGYETLVD---DDL--LSGGQKQRIAIARAILRDPAILLLDE 243
                K   + E  L+    +E L D   D    LSGGQ+QR+ IARAI   P +LL+DE
Sbjct: 121 -----KLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDE 175

Query: 244 ATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGN 302
             SALD         V+  L  + K   T+IV+ H +   K V DR+     GRI+E   
Sbjct: 176 PCSALDP----VATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNT 231

Query: 303 HAELLHKGRLYAKLVKR 319
             E+    +  +   KR
Sbjct: 232 TQEIFKNPQ--SSKTKR 246

Length = 251

>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional

 Score =  107 bits (270), Expect = 2e-27
 Identities = 77/246 (31%), Positives = 119/246 (48%), Gaps = 43/246 (17%)

Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-----GQIYIDGFPLTD--LD 150
           L  + + I  N V A +G SG GKST +    R+ +  D     G+I +DG  + D  +D
Sbjct: 41  LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100

Query: 151 IRWLREKIGFVGQEPQLLQMDIKSNIMYGC------PKDVKNEDIEWAAKQAYV-HEFIL 203
           +  LR ++G V Q P      I  N++YG        + V +E +E + + A +  E   
Sbjct: 101 VAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDE--- 157

Query: 204 SLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 257
                    V D L      LSGGQ+QR+ IARAI  +P +LLLDE TSALD  S   ++
Sbjct: 158 ---------VKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIE 208

Query: 258 GVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHKGRLYAKL 316
            ++  L    K+K T++++ H +     V D    +  G+++E G+         L+   
Sbjct: 209 ELITEL----KSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGD------TDTLFTSP 258

Query: 317 VKRQTE 322
            K+QTE
Sbjct: 259 AKKQTE 264

Length = 272

>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system

 Score =  106 bits (267), Expect = 3e-27
 Identities = 61/216 (28%), Positives = 103/216 (47%), Gaps = 18/216 (8%)

Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL--DIRWLR 155
           L+ V  ++   E+  ++G +G+GK+T  NL+     P+ G +  DG  +T L       R
Sbjct: 16  LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIA-R 74

Query: 156 EKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQ------AYVHEFILSLPCG 208
             IG   Q P+L   + +  N+M        +  +   A++          E +L    G
Sbjct: 75  LGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEE-LLER-VG 132

Query: 209 YETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 266
              L D     LS GQ++R+ IARA+  DP +LLLDE  + L+ E    +  ++  LR  
Sbjct: 133 LADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRER 192

Query: 267 CKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 301
                TV+++ H +  + ++ DR+ V+D GR+I  G
Sbjct: 193 ---GITVLLVEHDMDVVMSLADRVTVLDQGRVIAEG 225

The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score =  104 bits (262), Expect = 9e-27
 Identities = 61/232 (26%), Positives = 109/232 (46%), Gaps = 21/232 (9%)

Query: 77  MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 136
           M     +   F    +     ++ V  T++  EV  ++G +G+GK+T + +L  L EP  
Sbjct: 1   MITADALTKRFRDVKKTVQ-AVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDA 59

Query: 137 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNI-----MYGCPKDVKNEDIE 190
           G   +DGF     +    R ++GFV     L  ++  + N+     +YG   D     +E
Sbjct: 60  GFATVDGFD-VVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLE 118

Query: 191 WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 250
             A +  + E +       +  V     S G +Q++AIARA++ DP +LLLDE T+ LD 
Sbjct: 119 ELADRLGMEELL-------DRRVGG--FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDV 169

Query: 251 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 301
            +   ++  +  LR   K    ++   H +  ++ + DR+VV+  GR++  G
Sbjct: 170 MATRALREFIRQLRALGK---CILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  106 bits (265), Expect = 1e-26
 Identities = 71/245 (28%), Positives = 131/245 (53%), Gaps = 24/245 (9%)

Query: 80  VQFVNISFHYPSRPTVPI----LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 135
           ++F N+S+ Y  +   P     ++ V    E  +  AIVG +GSGKST +  +  L +P+
Sbjct: 3   IRFDNVSYTY--QKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT 60

Query: 136 DGQIYIDGFPLT----DLDIRWLREKIGFVGQ--EPQLLQMDIKSNIMYGCPKDVKNEDI 189
            G + +D   +T    D  IR +R++IG V Q  E QL +  ++  I++G PK+    ++
Sbjct: 61  TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFG-PKNF-KMNL 118

Query: 190 EWAAKQAYVHEFILSLPCGYETLVDDD---LLSGGQKQRIAIARAILRDPAILLLDEATS 246
           +    + Y H  ++ L  G+   V       +SGGQ ++IAI   +  +P I++LDE T+
Sbjct: 119 DEV--KNYAHRLLMDL--GFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTA 174

Query: 247 ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAE 305
            LD +S+  V  +L +L+ D    +T+I+++H ++ + +  D ++V+ +G I+   +  E
Sbjct: 175 GLDPQSKRQVMRLLKSLQTD--ENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKE 232

Query: 306 LLHKG 310
           L    
Sbjct: 233 LFKDK 237

Length = 286

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score =  109 bits (274), Expect = 1e-26
 Identities = 73/231 (31%), Positives = 113/231 (48%), Gaps = 43/231 (18%)

Query: 101 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD---IRWLREK 157
           + LT+   + + +VG SGSGKST    LLRL  PS G+I  DG  +  L    +R LR +
Sbjct: 306 ISLTLRRGQTLGLVGESGSGKSTLGLALLRLI-PSQGEIRFDGQDIDGLSRKEMRPLRRR 364

Query: 158 IGFVGQEP-----------QLLQMDIKSNIMYGCPKDVKNEDIEW--------AAKQAYV 198
           +  V Q+P           Q+++  ++ +       +     IE         A +  Y 
Sbjct: 365 MQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYP 424

Query: 199 HEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 258
           HEF                 SGGQ+QRIAIARA++  P ++LLDE TSALD   +  V  
Sbjct: 425 HEF-----------------SGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLD 467

Query: 259 VLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLH 308
           +L  L+   K   + + I+H L+ ++A+  R++V+ DG+I+E G    +  
Sbjct: 468 LLRDLQQ--KHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFA 516

Length = 534

>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional

 Score =  105 bits (263), Expect = 1e-26
 Identities = 76/240 (31%), Positives = 126/240 (52%), Gaps = 31/240 (12%)

Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LD 150
           L+ + L  E N+V A++G SG GKSTF+  L R+ +       +G+I +DG  + D  +D
Sbjct: 22  LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81

Query: 151 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDVKN-----EDIEWAAKQAYVHEFILS 204
           +  LR ++G V Q+P      I  N+ YG     VK+     E +E + + A + + +  
Sbjct: 82  VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEV-- 139

Query: 205 LPCGYETLVDDDL-LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 263
                + L +  L LSGGQ+QR+ IARA+  +P +LL+DE  SALD  +   ++ ++H L
Sbjct: 140 ----KDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHEL 195

Query: 264 RNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTE 322
               K + T+I++ H +     V D       G++IEVG   ++  + R      ++QTE
Sbjct: 196 ----KARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTRPR------EKQTE 245

Length = 253

>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  107 bits (268), Expect = 1e-26
 Identities = 63/213 (29%), Positives = 114/213 (53%), Gaps = 22/213 (10%)

Query: 103 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD----LDIRWLREKI 158
            T+ A  + A+ G SGSGK++ +N++  L  P +G+I ++G  L D    + +   + +I
Sbjct: 19  FTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRI 78

Query: 159 GFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-- 215
           G+V Q+ +L     ++ N+ YG           W + +A   + +  L  G E L+D   
Sbjct: 79  GYVFQDARLFPHYTVRGNLRYG----------MWKSMRAQFDQLVALL--GIEHLLDRYP 126

Query: 216 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIV 275
             LSGG+KQR+AI RA+L  P +LL+DE  ++LD   +  +   L  LR++      ++ 
Sbjct: 127 GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDE--INIPILY 184

Query: 276 IAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELL 307
           ++H L  + +  DR+VV+++G++   G   E+ 
Sbjct: 185 VSHSLDEVLRLADRVVVLENGKVKASGPLEEVW 217

Length = 352

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score =  103 bits (260), Expect = 2e-26
 Identities = 58/234 (24%), Positives = 112/234 (47%), Gaps = 35/234 (14%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           +Q  N++  Y  +     L+ V LT+    +  ++G +G+GK+T + +L  L  PS G I
Sbjct: 1   LQLENLTKRYGKKR---ALDGVSLTLG-PGMYGLLGPNGAGKTTLMRILATLTPPSSGTI 56

Query: 140 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI-----------MYGCPKDVKNED 188
            IDG  +     + LR +IG++ QE       +  N            + G P       
Sbjct: 57  RIDGQDVLK-QPQKLRRRIGYLPQEF-----GVYPNFTVREFLDYIAWLKGIPSKEVKAR 110

Query: 189 IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSAL 248
           ++   +   + +         +  +    LSGG ++R+ IA+A++ DP+IL++DE T+ L
Sbjct: 111 VDEVLELVNLGDR-------AKKKIGS--LSGGMRRRVGIAQALVGDPSILIVDEPTAGL 161

Query: 249 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 301
           D E     + +L  L  D    R VI+  H +  ++++ +++ V++ G+++  G
Sbjct: 162 DPEERIRFRNLLSELGED----RIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score =  103 bits (260), Expect = 2e-26
 Identities = 60/237 (25%), Positives = 118/237 (49%), Gaps = 28/237 (11%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           +Q  N++  Y      P ++ + L +   E+  ++G +G+GK+T + +L     P+ G  
Sbjct: 1   LQIRNLTKTYKKGT-KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA 59

Query: 140 YIDGFPLTDLDIRWLREKIGFVGQEPQ----LLQMDIKSNIMY-----GCPKDVKNEDIE 190
           YI+G+ +   D +  R+ +G+    PQ      ++ ++ ++ +     G PK    E++E
Sbjct: 60  YINGYSIRT-DRKAARQSLGYC---PQFDALFDELTVREHLRFYARLKGLPKSEIKEEVE 115

Query: 191 WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 250
              +        L L            LSGG K+++++A A++  P++LLLDE TS LD 
Sbjct: 116 LLLRV-------LGLTDKANKRART--LSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDP 166

Query: 251 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAEL 306
            S   +  ++  +R      R++I+  H +   +A+ DRI ++ DG++  +G+  EL
Sbjct: 167 ASRRAIWDLILEVR----KGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  104 bits (260), Expect = 3e-26
 Identities = 76/220 (34%), Positives = 113/220 (51%), Gaps = 23/220 (10%)

Query: 97  ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--L 149
           IL +V L I  N V A++G SG GKSTF+  L R+ +       +G IY+DG  + D  +
Sbjct: 18  ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77

Query: 150 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGY 209
           D+  LR+K+G V Q+P      I  N+ YG    +  ED E   ++  V E + +     
Sbjct: 78  DVVELRKKVGMVFQKPNPFPKSIFDNVAYGL--RIHGEDDEDFIEER-VEESLKAAALWD 134

Query: 210 ETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 263
           E  V D L      LSGGQ+QR+ IAR I   P ++L+DE  SALD  S   ++ ++H L
Sbjct: 135 E--VKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKL 192

Query: 264 RNDCKTKRTVIVIAHRLSTIKAVDRIV-VIDDGRIIEVGN 302
           + D     T++++ H +     V +      +G IIE G 
Sbjct: 193 KED----YTIVIVTHNMQQATRVSKYTSFFLNGEIIESGL 228

Length = 250

>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  103 bits (259), Expect = 3e-26
 Identities = 75/231 (32%), Positives = 117/231 (50%), Gaps = 37/231 (16%)

Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-----GQIYIDGFPL--TDLD 150
           LN + L I  N++ A++G SG GKSTF+  L R+ +        G++ +DG  +   D+D
Sbjct: 20  LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79

Query: 151 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-----KDVKNED--IEWAAKQAYVHEFIL 203
           +  LR+++G V Q+P    M I  N+ YG P     KD K  D  +EWA K+A + +   
Sbjct: 80  VVELRKRVGMVFQKPNPFPMSIYDNVAYG-PRIHGIKDKKELDKIVEWALKKAALWD--- 135

Query: 204 SLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 257
                    V DDL      LSGGQ+QR+ IAR I   P ++L+DE TSALD  S   ++
Sbjct: 136 --------EVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIE 187

Query: 258 GVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 307
            ++  L+ +     T++++ H +     V D       G +IE     ++ 
Sbjct: 188 DLMVELKKE----YTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234

Length = 251

>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional

 Score =  104 bits (261), Expect = 4e-26
 Identities = 70/235 (29%), Positives = 119/235 (50%), Gaps = 24/235 (10%)

Query: 84  NISFHY---PSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY 140
           N+S+ Y           L+ V L ++  E + I+G +GSGKST    +  L  PS+G++Y
Sbjct: 9   NVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVY 68

Query: 141 IDGFPLTDLDIRW-LREKIGFVGQEP--QLLQMDIKSNIMYG------CPKDVKNEDIEW 191
           +DG   +D +  W +R K G V Q P  Q++   ++ ++ +G       P++++ E ++ 
Sbjct: 69  VDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIR-ERVDE 127

Query: 192 AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 251
           + K+  ++E+    P          LLSGGQKQR+AIA  +   P  ++ DE T+ LD  
Sbjct: 128 SLKKVGMYEYRRHAP---------HLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPS 178

Query: 252 SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAEL 306
               V   +  L    K   T+I+I H +      DRI+V+D G+++  G   E+
Sbjct: 179 GRREVVNTIKELNK--KYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEI 231

Length = 280

>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein

 Score =  103 bits (258), Expect = 4e-26
 Identities = 67/211 (31%), Positives = 114/211 (54%), Gaps = 11/211 (5%)

Query: 94  TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL---D 150
              +L  V L+I   E+VAIVG SGSGKST ++LL  L  P+ G++  +G  L+ L   +
Sbjct: 17  DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNE 76

Query: 151 IRWLR-EKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCG 208
              LR +K+GF+ Q   LL       N+    P  +  + ++ A ++AY  E +  +   
Sbjct: 77  RAKLRNKKLGFIYQFHHLLPDFTALENVAM--PLLIGKKSVKEAKERAY--EMLEKVGLE 132

Query: 209 YETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCK 268
           +        LSGG++QR+AIARA++  P+++L DE T  LD+ +   +  ++  L  +  
Sbjct: 133 HRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELN 192

Query: 269 TKRTVIVIAHRLSTIKAVDRIVVIDDGRIIE 299
           T  + +V+ H L   K +DR++ + DG++  
Sbjct: 193 T--SFLVVTHDLELAKKLDRVLEMKDGQLFN 221

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221

>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  103 bits (259), Expect = 9e-26
 Identities = 73/240 (30%), Positives = 120/240 (50%), Gaps = 22/240 (9%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP---SD 136
           V+F ++SF YP     P LN +  +I      A++G +GSGKST   L+  L  P    +
Sbjct: 6   VEFKHVSFTYPDSK-KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPN 64

Query: 137 GQIYIDGFPLTDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYG-----CPKDVKNEDI 189
            +I +DG  LT   +  +REK+G V Q P  Q +   +  ++ +G      P+    + +
Sbjct: 65  SKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIV 124

Query: 190 EWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 249
                   + ++I S P           LSGGQKQR+AIA  +  +P I++LDE+TS LD
Sbjct: 125 RDVLADVGMLDYIDSEPAN---------LSGGQKQRVAIAGILAVEPKIIILDESTSMLD 175

Query: 250 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK 309
              +  +  ++  L+       TVI I H +      D+++V+DDG+++  G+  E+  K
Sbjct: 176 PAGKEQILKLIRKLKKK--NNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233

Length = 282

>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  102 bits (257), Expect = 1e-25
 Identities = 69/231 (29%), Positives = 117/231 (50%), Gaps = 24/231 (10%)

Query: 77  MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 136
           M  +   ++S  Y  +P    L  V LTI + E+V ++G SG GK+T +NL+     PS 
Sbjct: 1   MCMLNVSHLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSR 59

Query: 137 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQ 195
           G I ++G  +            G V Q   LL  +++  N+ +G    ++   IE A ++
Sbjct: 60  GSIQLNGRRIEGPGAER-----GVVFQNEALLPWLNVIDNVAFG----LQLRGIEKAQRR 110

Query: 196 AYVHEFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 253
              H+ +  +  G E      +  LSGG +QR+ IARA+  +P +LLLDE   ALD+ + 
Sbjct: 111 EIAHQMLALV--GLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTR 168

Query: 254 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV---DRIVVID--DGRIIE 299
             ++ +L  L  +  T + V++I H +   +A+    R+VV+    GR++E
Sbjct: 169 EQMQELLLDLWQE--TGKQVLLITHDIE--EALFLATRLVVLSPGPGRVVE 215

Length = 259

>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein

 Score =  100 bits (251), Expect = 2e-25
 Identities = 65/206 (31%), Positives = 106/206 (51%), Gaps = 20/206 (9%)

Query: 103 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG 162
           L +   E+VAI+G SG+GKST +NL+    EP+ G I ++    T L     +  +  + 
Sbjct: 19  LNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPY--QRPVSMLF 76

Query: 163 QEPQLL-QMDIKSNIMYGCPKDVK-----NEDIEWAAKQAYVHEFILSLPCGYETLVDDD 216
           QE  L   + ++ NI  G    +K      E +  AA+Q  + +++  LP         +
Sbjct: 77  QENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP---------E 127

Query: 217 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVI 276
            LSGGQ+QR+A+AR ++R   ILLLDE  SALD      +  ++  L ++   +RT++++
Sbjct: 128 QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSE--RQRTLLMV 185

Query: 277 AHRLS-TIKAVDRIVVIDDGRIIEVG 301
            H LS       +I V+  G+I  V 
Sbjct: 186 THHLSDARAIASQIAVVSQGKIKVVS 211

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score =  100 bits (251), Expect = 3e-25
 Identities = 54/211 (25%), Positives = 108/211 (51%), Gaps = 15/211 (7%)

Query: 94  TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW 153
            V  L+ +  ++E  E+  ++G +G+GK+T + ++L +  P  G++  DG PL       
Sbjct: 12  RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAA--- 68

Query: 154 LREKIGFVGQEPQLLQ-MDIKSNIMY-GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET 211
            R +IG++ +E  L   M +   ++Y    K +K E+      +  + E++  L      
Sbjct: 69  -RNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEA-----RRRIDEWLERLELSEYA 122

Query: 212 LVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 271
               + LS G +Q++    A++ DP +L+LDE  S LD  +   +K V+  L    +  +
Sbjct: 123 NKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELA---RAGK 179

Query: 272 TVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 301
           TVI+  H++  ++ + DR+++++ GR +  G
Sbjct: 180 TVILSTHQMELVEELCDRVLLLNKGRAVLYG 210

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional

 Score =  101 bits (253), Expect = 3e-25
 Identities = 79/244 (32%), Positives = 122/244 (50%), Gaps = 32/244 (13%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--PS-- 135
           +Q  ++S +Y  +     LN V L    NE+ A++G SGSGKST +  + R+ +  P   
Sbjct: 6   LQVSDLSVYYNKKKA---LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVT 62

Query: 136 -DGQIYIDGF----PLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC------PKDV 184
             G I  +G     P TD     LR++IG V Q+P    M I  N++YG        K V
Sbjct: 63  ITGSIVYNGHNIYSPRTD--TVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQV 120

Query: 185 KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL-LSGGQKQRIAIARAILRDPAILLLDE 243
            +E +E + K A + + +       + L D  L LSGGQ+QR+ IAR +   P I+LLDE
Sbjct: 121 LDEAVEKSLKGASIWDEV------KDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDE 174

Query: 244 ATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGN 302
            TSALD  S   ++  L  L++D     T++++   +     + DR     DG +IE  +
Sbjct: 175 PTSALDPISAGKIEETLLGLKDD----YTMLLVTRSMQQASRISDRTGFFLDGDLIEYND 230

Query: 303 HAEL 306
             ++
Sbjct: 231 TKQM 234

Length = 252

>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein

 Score =  103 bits (257), Expect = 4e-25
 Identities = 75/239 (31%), Positives = 126/239 (52%), Gaps = 18/239 (7%)

Query: 77  MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 136
           M  +  +   FH  ++ T+  LN+V L + A ++  ++G SG+GKST +  +  L  P+ 
Sbjct: 1   MIKLSNITKVFHQGTK-TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTS 59

Query: 137 GQIYIDGFPLTDL---DIRWLREKIGFVGQEPQLLQMDIKSNIMYG---CPKDVKNEDIE 190
           G + +DG  LT L   ++   R +IG + Q   LL     S  ++G    P ++ N   +
Sbjct: 60  GSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLS----SRTVFGNVALPLELDNTPKD 115

Query: 191 WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 250
              ++  V E +  +  G +       LSGGQKQR+AIARA+  +P +LL DEATSALD 
Sbjct: 116 EIKRK--VTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDP 173

Query: 251 ESEHYVKGVLHALRNDCKT-KRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 307
            +    + +L  L+   +    T+++I H +  +K + D + VI +G +IE G  +E+ 
Sbjct: 174 AT---TQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIF 229

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343

>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

 Score =  100 bits (251), Expect = 8e-25
 Identities = 55/230 (23%), Positives = 101/230 (43%), Gaps = 33/230 (14%)

Query: 81  QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY 140
           +   ++           L  +   I   E V I+G +G+GKST + L+  +Y+P+ G++ 
Sbjct: 26  RLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVK 85

Query: 141 IDG--FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI-----MYGCPKDVKNEDIEWAA 193
           + G   PL +L            G +P+L   +   NI     + G  +   +E ++   
Sbjct: 86  VTGKVAPLIELG----------AGFDPELTGRE---NIYLRGLILGLTRKEIDEKVDEII 132

Query: 194 KQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 253
           + A + +FI   P            S G   R+A + A   +P ILLLDE  +  D+  +
Sbjct: 133 EFAELGDFI-DQPVKT--------YSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQ 183

Query: 254 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGN 302
                 L+ L    +  +T+++++H L  IK   DR + ++ G+I   G+
Sbjct: 184 EKCLERLNELV---EKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGS 230

Length = 249

>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  100 bits (249), Expect = 8e-25
 Identities = 75/246 (30%), Positives = 116/246 (47%), Gaps = 47/246 (19%)

Query: 79  HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--PS- 135
            V F    FH         L  + + IE   VVA +G SG GKSTF+ L  R+ +  P+ 
Sbjct: 8   DVNFWYGDFH--------ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT 59

Query: 136 --DGQIYIDGFPLTDLDIR--WLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEW 191
             +G+I IDG  + D  ++   LR+ +G V Q P      I  N+ YG   +   ++   
Sbjct: 60  RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDN--- 116

Query: 192 AAKQAYVHEFILSLPCGYETL--------VDDDL------LSGGQKQRIAIARAILRDPA 237
               A++ + +       ETL        V D L      LSGGQ+QR+ IARA+   P+
Sbjct: 117 ----AFIRQRVE------ETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPS 166

Query: 238 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGR 296
           +LL+DE  SALD  S   V+ ++H L+ D     T++++ H +     V D+      G 
Sbjct: 167 VLLMDEPASALDPISTAKVEELIHELKKD----YTIVIVTHNMQQAARVSDKTAFFYMGE 222

Query: 297 IIEVGN 302
           ++E  +
Sbjct: 223 MVEYDD 228

Length = 250

>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein

 Score = 98.4 bits (245), Expect = 4e-24
 Identities = 72/243 (29%), Positives = 118/243 (48%), Gaps = 25/243 (10%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           V+F +++  +     + +L+ +  ++ A E VA++G SGSGKST + +L+ L    +GQI
Sbjct: 1   VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQI 57

Query: 140 YIDG-------------FPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVK 185
            ++G              P  +  +R +R KIG V Q   L     +  N+    P  V 
Sbjct: 58  QVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEA-PVLVL 116

Query: 186 NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEAT 245
              +  A  +    E +  +    +       LSGGQ+QR+AIARA+   P ++L DE T
Sbjct: 117 G--MARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVT 174

Query: 246 SALDSESEHYVKGVLHALRNDC-KTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNH 303
           SALD E    V  VL+ +R    +   T++++ H +   +   DR+   D GRI+E G  
Sbjct: 175 SALDPE---LVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKP 231

Query: 304 AEL 306
            E+
Sbjct: 232 DEI 234

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252

>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

 Score = 98.2 bits (245), Expect = 5e-24
 Identities = 53/238 (22%), Positives = 95/238 (39%), Gaps = 36/238 (15%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           ++  N+S     +    IL  +   +   E  AIVG +G+GK+T ++LL   + PS G +
Sbjct: 32  IELKNVSVRRNGKK---ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDV 88

Query: 140 YIDGFPLTDLDIRW-LREKIGFVGQEPQLLQMDIKSNI---------------MYGCPKD 183
            + G      +  + LR++IG V  E   L    +                  +Y     
Sbjct: 89  TLLGRRFGKGETIFELRKRIGLVSSE---LHERFRVRETVRDVVLSGFFASIGIYQEDLT 145

Query: 184 VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLL 241
                 + AA Q  +             L D     LS G+++R+ IARA+++DP +L+L
Sbjct: 146 ----AEDLAAAQWLLELLGAK------HLADRPFGSLSQGEQRRVLIARALVKDPELLIL 195

Query: 242 DEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII 298
           DE    LD  +   +   L  L         ++ + H    I       +++ +G ++
Sbjct: 196 DEPAQGLDLIAREQLLNRLEELAAS-PGAPALLFVTHHAEEIPPCFTHRLLLKEGEVV 252

Length = 257

>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 98.3 bits (245), Expect = 5e-24
 Identities = 75/237 (31%), Positives = 116/237 (48%), Gaps = 48/237 (20%)

Query: 97  ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL---TDLD--- 150
           +L  V L   A +V++I+G SGSGKSTF+  +  L +PS G I ++G  +    D D   
Sbjct: 21  VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQL 80

Query: 151 -------IRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDV----KNEDIEWAAK---Q 195
                  ++ LR ++G V Q   L   M +  N++   P  V    K E IE A K   +
Sbjct: 81  KPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIE-APVHVLGVSKAEAIERAEKYLAK 139

Query: 196 AYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHY 255
             + E   + P           LSGGQ+QR+AIARA+  +P ++L DE TSALD E    
Sbjct: 140 VGIAEKADAYPA---------HLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPE---L 187

Query: 256 VKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRL 312
           V  VL  +++  +  RT++V+ H +   +              +V +H   LH+G++
Sbjct: 188 VGEVLKVMQDLAEEGRTMVVVTHEMGFAR--------------DVSSHVIFLHQGKI 230

Length = 256

>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 98.2 bits (244), Expect = 5e-24
 Identities = 76/218 (34%), Positives = 111/218 (50%), Gaps = 24/218 (11%)

Query: 103 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLDIRWLREKIG 159
           + IE N++ A++G SG GKSTF+    R+ +     DG + I+G  + + D+  LR+ +G
Sbjct: 23  MQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVG 82

Query: 160 FVGQEPQLLQMDIKSNIMYGCPK---DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD 216
            V Q+P +    I  NI Y  PK    +KN+D E    +A V + +  +  G    V D 
Sbjct: 83  MVFQQPNVFVKSIYENISYA-PKLHGMIKNKDEE----EALVVDCLQKV--GLFEEVKDK 135

Query: 217 L------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTK 270
           L      LSGGQ+QR+ IARA+   P +LLLDE TSALD  S     GV+  L  +    
Sbjct: 136 LKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISS----GVIEELLKELSHN 191

Query: 271 RTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 307
            ++I++ H +   K V D       G +IE G   E  
Sbjct: 192 LSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFF 229

Length = 246

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score = 99.0 bits (247), Expect = 6e-24
 Identities = 60/222 (27%), Positives = 99/222 (44%), Gaps = 26/222 (11%)

Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 157
           ++ V   +   EV   +G +G+GK+T + +L  L  P+ G   + G+ +   + R +R  
Sbjct: 9   VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRS 67

Query: 158 IGFVGQEPQLLQMDIK----SNIM-----YGCPKDVKNEDIEWAAKQAYVHEFILSLPCG 208
           IG V Q   +   D       N+      YG PKD   E  E   +   + E        
Sbjct: 68  IGIVPQYASV---DEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGT 124

Query: 209 YETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCK 268
           Y         SGG ++R+ IA +++  P +L LDE T+ LD  +   +   + AL+   +
Sbjct: 125 Y---------SGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALK---E 172

Query: 269 TKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHK 309
              T+++  H +     + DRI +ID GRII  G   EL  +
Sbjct: 173 EGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 95.6 bits (239), Expect = 9e-24
 Identities = 55/206 (26%), Positives = 96/206 (46%), Gaps = 45/206 (21%)

Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR-WLRE 156
           +  V   + A E+V I GL G+G++     L  L  P+ G+I +DG P+T    R  +R 
Sbjct: 16  VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRA 75

Query: 157 KIGFVGQEPQ----LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETL 212
            I +V ++ +    +L + +  NI                           +L       
Sbjct: 76  GIAYVPEDRKREGLVLDLSVAENI---------------------------ALSS----- 103

Query: 213 VDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRT 272
               LLSGG +Q++ +AR + RDP +L+LDE T  +D  ++  +  ++  L +  K    
Sbjct: 104 ----LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGK---A 156

Query: 273 VIVIAHRLSTIKAV-DRIVVIDDGRI 297
           V++I+  L  +  + DRI+V+ +GRI
Sbjct: 157 VLLISSELDELLGLCDRILVMYEGRI 182

This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182

>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 97.4 bits (242), Expect = 1e-23
 Identities = 79/254 (31%), Positives = 123/254 (48%), Gaps = 43/254 (16%)

Query: 73  LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 132
            Q+L+  ++  ++SF+Y    T   +  + + I  N+V AI+G SG GKSTF+  L R+ 
Sbjct: 1   NQQLIPAIKVKDLSFYYN---TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRIS 57

Query: 133 E-----PSDGQIYIDGFPLTD--LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC----- 180
           E       +G +   G  + D  ++I  LR +IG V Q P    M I  N+ YG      
Sbjct: 58  ELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAK 117

Query: 181 -PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL------LSGGQKQRIAIARAIL 233
            P+   +E +E A K A + +            V D L      LSGGQ+QR+ IARA+ 
Sbjct: 118 LPQADLDEIVESALKGAALWQ-----------EVKDKLNKSALGLSGGQQQRLCIARALA 166

Query: 234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI- 292
             P +LL+DE  SALD  +   V+ ++H+LR++     T+ ++ H +     V       
Sbjct: 167 IKPKVLLMDEPCSALDPIATMKVEELIHSLRSEL----TIAIVTHNMQQATRVSDFTAFF 222

Query: 293 --DDGRI---IEVG 301
             D+ RI   +E G
Sbjct: 223 STDESRIGQMVEFG 236

Length = 259

>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 98.0 bits (244), Expect = 1e-23
 Identities = 70/236 (29%), Positives = 122/236 (51%), Gaps = 29/236 (12%)

Query: 80  VQFVNISFHY-PSRPTVPI-LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 137
           ++F N+ + Y P  P     L+++   +E    VA+VG +GSGKST +     L +PS G
Sbjct: 3   IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62

Query: 138 QIYIDGFPLT----DLDIRWLREKIGFVGQ--EPQLLQMDIKSNIMYGCPKD-------V 184
            I I G+ +T    + +++ LR+K+  V Q  E QL +  +  ++ +G PK+        
Sbjct: 63  TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFG-PKNFGFSEDEA 121

Query: 185 KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEA 244
           K + ++W  K     + I   P  +E       LSGGQ +R+AIA  +  +P IL LDE 
Sbjct: 122 KEKALKWLKKVGLSEDLISKSP--FE-------LSGGQMRRVAIAGVMAYEPEILCLDEP 172

Query: 245 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIE 299
            + LD E     K ++   ++  K   TVI++ H +  + +  D ++V++ G++I+
Sbjct: 173 AAGLDPEGR---KEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIK 225

Length = 287

>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system

 Score = 96.4 bits (241), Expect = 1e-23
 Identities = 59/228 (25%), Positives = 95/228 (41%), Gaps = 35/228 (15%)

Query: 83  VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 142
           + I            L  V   +   E + ++G +G+GKST + LL  +Y P  G + + 
Sbjct: 23  LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVR 82

Query: 143 GFPLTDLDIRWLREKIGF-VGQEPQLLQMDIKSNI-----MYGCPKDVKNEDIEWAAKQA 196
           G       +  L   +G   G  P+L   +   NI     + G  +       E   K  
Sbjct: 83  G------RVSSL---LGLGGGFNPELTGRE---NIYLNGRLLGLSRK------EIDEKID 124

Query: 197 YVHEFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 254
            + EF           +D  +   S G K R+A A A   +P ILL+DE  +  D     
Sbjct: 125 EIIEF-----SELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGD---AA 176

Query: 255 YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 301
           + +     LR   K  +TVI+++H  S+IK + DR +V++ G+I   G
Sbjct: 177 FQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224

The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224

>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional

 Score = 97.1 bits (242), Expect = 1e-23
 Identities = 66/200 (33%), Positives = 100/200 (50%), Gaps = 34/200 (17%)

Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-----GQIYIDGFPLT--DLD 150
           +  + +  E N++ A++G SGSGKST++  L R+ +  D     GQI   G  +   +++
Sbjct: 36  IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95

Query: 151 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD-VKN-----EDIEWAAKQAYVHEFILS 204
           +  +R+ IG V Q P      I  NI +   +  VK+     E +E + KQA + +    
Sbjct: 96  VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWD---- 151

Query: 205 LPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 258
                   V DDL      LSGGQ+QR+ IARAI   P ILL+DE  SALD  S   ++ 
Sbjct: 152 -------QVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEE 204

Query: 259 VLHALRNDCKTKRTVIVIAH 278
            +  L    K   T+I++ H
Sbjct: 205 TMFEL----KKNYTIIIVTH 220

Length = 267

>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 97.0 bits (241), Expect = 2e-23
 Identities = 70/245 (28%), Positives = 119/245 (48%), Gaps = 44/245 (17%)

Query: 79  HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE----- 133
            V+  ++S +Y  +  V   N + + IE + V A++G SG GKSTF+  + R+ +     
Sbjct: 23  EVK--DLSIYYGEKRAV---NDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSA 77

Query: 134 PSDGQIYIDGFPLTD--LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP------KDVK 185
            S+G+I  +G  + D  +++  LR +IG V Q+P      I +NI +         K V 
Sbjct: 78  RSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVL 137

Query: 186 NEDIE--------WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 237
           +E +E        W   +  +H   LSL             SGGQ+QR+ IAR +   PA
Sbjct: 138 DEIVEESLTKAALWDEVKDRLHSSALSL-------------SGGQQQRLCIARTLAMKPA 184

Query: 238 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL-STIKAVDRIVVIDDGR 296
           +LLLDE  SALD  S   ++ ++  L+ +     ++I++ H +   ++  DR     +G 
Sbjct: 185 VLLLDEPASALDPISNAKIEELITELKEE----YSIIIVTHNMQQALRVSDRTAFFLNGD 240

Query: 297 IIEVG 301
           ++E  
Sbjct: 241 LVEYD 245

Length = 268

>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional

 Score = 95.9 bits (239), Expect = 2e-23
 Identities = 57/197 (28%), Positives = 103/197 (52%), Gaps = 11/197 (5%)

Query: 96  PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 155
            ILN++  ++ A E   I G SG GKST + ++  L  P+ G +  +G  ++ L     R
Sbjct: 21  KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYR 80

Query: 156 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD 215
           +++ +  Q P L    +  N+++  P  ++N+  + A     +  F  +LP   +T++  
Sbjct: 81  QQVSYCAQTPTLFGDTVYDNLIF--PWQIRNQQPDPAIFLDDLERF--ALP---DTILTK 133

Query: 216 DL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTV 273
           ++  LSGG+KQRI++ R +   P +LLLDE TSALD  ++H V  ++H    +      V
Sbjct: 134 NIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNI--AV 191

Query: 274 IVIAHRLSTIKAVDRIV 290
           + + H    I   D+++
Sbjct: 192 LWVTHDKDEINHADKVI 208

Length = 225

>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 96.1 bits (239), Expect = 3e-23
 Identities = 68/227 (29%), Positives = 109/227 (48%), Gaps = 30/227 (13%)

Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPL-TDLDI 151
           L  + L I A +V A++G SG GKST +  L R+ +        G++ +DG  +  ++D+
Sbjct: 19  LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78

Query: 152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP----KDVKNEDIEWAAKQAYVHEFILSLPC 207
             LR K+G V Q+P    M I  N+ YG      KD K  D         V   +     
Sbjct: 79  ADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLD-------EVVERSLRGAAL 131

Query: 208 GYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLH 261
             E  V D L      LSGGQ+QR+ IAR I  +P ++L+DE TSALD  + H ++ ++ 
Sbjct: 132 WDE--VKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELME 189

Query: 262 ALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 307
            L+       T++++ H +   + + DR      G ++E  +   + 
Sbjct: 190 ELKK----NYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232

Length = 249

>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 97.6 bits (243), Expect = 3e-23
 Identities = 66/239 (27%), Positives = 109/239 (45%), Gaps = 27/239 (11%)

Query: 97  ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD-------- 148
            LN++  T E N++  I+G SGSGKST V     L +   G I +    + D        
Sbjct: 41  ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100

Query: 149 --------LDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYV 198
                    + + LR ++  V Q P  QL +  I+ +IM+G P  +  +  E      + 
Sbjct: 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFG-PVALGVKKSEAKKLAKF- 158

Query: 199 HEFILSLPCGYETLVDDDL-LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 257
             ++  +      L      LSGGQK+R+AIA  +   P IL+ DE T+ LD + EH   
Sbjct: 159 --YLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHE-- 214

Query: 258 GVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHKGRLYAK 315
            ++  + +     +TV VI H +  +  V D ++V+D G+I++ G   E+     +   
Sbjct: 215 -MMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINS 272

Length = 320

>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 96.1 bits (240), Expect = 3e-23
 Identities = 63/225 (28%), Positives = 105/225 (46%), Gaps = 21/225 (9%)

Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL-DIRWLRE 156
           +N V L +   E+V ++G +G+GK+T  NL+   Y+PS G +   G  +T L   R  R 
Sbjct: 20  VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARL 79

Query: 157 KIGFVGQEPQLLQ-MDIKSNIMYGC------------PKDVKNEDIEWAAKQAYVHEFIL 203
            I    Q  +L   + +  N+  G             P+  K E    A ++A      +
Sbjct: 80  GIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEE--REARERARELLEFV 137

Query: 204 SLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 263
            L    +    +  LS GQ++R+ IARA+   P +LLLDE  + L+ E    +  ++  L
Sbjct: 138 GLGELADRPAGN--LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIREL 195

Query: 264 RNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELL 307
           R+      T+++I H +  +    DRIVV++ G +I  G   E+ 
Sbjct: 196 RDR--GGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVR 238

Length = 250

>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional

 Score = 95.5 bits (238), Expect = 3e-23
 Identities = 68/243 (27%), Positives = 111/243 (45%), Gaps = 39/243 (16%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           +Q   I+  Y +      L  + L     E + ++G SG+GKS+ + +L  L  P  G +
Sbjct: 3   IQLNGINCFYGAHQ---ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59

Query: 140 YIDG--FPLT----DLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWA 192
            I G  F  +    D  IR LR  +G V Q+  L   + ++ N++   P  V     + A
Sbjct: 60  NIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEA-PCRVLGLSKDQA 118

Query: 193 AKQA-----------YVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLL 241
             +A           Y   F L              LSGGQ+QR+AIARA++ +P +LL 
Sbjct: 119 LARAEKLLERLRLKPYADRFPLH-------------LSGGQQQRVAIARALMMEPQVLLF 165

Query: 242 DEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEV 300
           DE T+ALD E    +  ++  L     T  T +++ H +   +    R+V +++G I+E 
Sbjct: 166 DEPTAALDPEITAQIVSIIRELAE---TGITQVIVTHEVEVARKTASRVVYMENGHIVEQ 222

Query: 301 GNH 303
           G+ 
Sbjct: 223 GDA 225

Length = 242

>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE

 Score = 95.6 bits (238), Expect = 6e-23
 Identities = 74/244 (30%), Positives = 123/244 (50%), Gaps = 31/244 (12%)

Query: 84  NISFHYPS------RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 137
           +++  Y +      +   P+L +V L+IE  E V ++G SG GKST   LLL L +P+ G
Sbjct: 7   DVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQG 66

Query: 138 QIYIDGFPLTDLD---IRWLREKIGFVGQE-PQLL--QMDIKSNIMYGCPKDVKN-EDIE 190
            +   G  L  LD    R  R  +  V Q+ P  +  +M ++  I  G P  +++   ++
Sbjct: 67  TVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQII--GEP--LRHLTSLD 122

Query: 191 WAAKQAYVHEFILSLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEA 244
            + ++A + E +  +      L  +D       LSGGQ QRI IARA+   P +++LDEA
Sbjct: 123 ESEQKARIAELLDMV-----GLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEA 177

Query: 245 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNH 303
            S LD   +  +  +L  L+    T    + I H L  +++   R+ V+D G+I+E  + 
Sbjct: 178 VSNLDMVLQAVILELLRKLQQAFGT--AYLFITHDLRLVQSFCQRVAVMDKGQIVEECDV 235

Query: 304 AELL 307
           A+LL
Sbjct: 236 AQLL 239

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265

>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 95.3 bits (237), Expect = 1e-22
 Identities = 67/225 (29%), Positives = 112/225 (49%), Gaps = 36/225 (16%)

Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-----GQIYIDGFPLTDLDIR 152
           L+ V + I  N+V A++G SG GKSTF+  + R+ +  D     G++   G  + D D+ 
Sbjct: 55  LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114

Query: 153 --WLREKIGFVGQEPQLLQMDIKSNIMYGC-----PKDVKNEDIEWAAKQAYVHEFILSL 205
              LR +IG V Q+P      I  N+ YG        D+ +E +E + ++A + +     
Sbjct: 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDI-DERVEESLRRAALWD----- 168

Query: 206 PCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV 259
                  V D L      LSGGQ+QR+ IARAI  DP ++L+DE  SALD  +   ++ +
Sbjct: 169 ------EVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDL 222

Query: 260 LHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVV-IDDGRIIEVGN 302
           +  L  +     TV+++ H +     + D+  V +  G ++E  +
Sbjct: 223 IEELAEE----YTVVIVTHNMQQAARISDKTAVFLTGGELVEFDD 263

Length = 285

>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 94.1 bits (234), Expect = 1e-22
 Identities = 67/243 (27%), Positives = 113/243 (46%), Gaps = 29/243 (11%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           +Q   I+  Y +      L  + L     E + ++G SG+GKS+ + +L  L  P  G +
Sbjct: 3   IQLNGINCFYGAHQA---LFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59

Query: 140 YIDG--FPL----TDLDIRWLREKIGFVGQEPQLL-QMDIKSNIM------YGCPKDVKN 186
            I G  F      +D  IR LR  +G V Q+  L   + ++ N++       G  KD   
Sbjct: 60  NIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQAL 119

Query: 187 EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATS 246
              E   K+  +  +    P           LSGGQ+QR+AIARA++ +P +LL DE T+
Sbjct: 120 ARAEKLLKRLRLKPYADRYPLH---------LSGGQQQRVAIARALMMEPQVLLFDEPTA 170

Query: 247 ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAE 305
           ALD E    +  ++  L    +T  T +++ H +   +    R+V +++G I+E G+ + 
Sbjct: 171 ALDPEITAQIVSIIKELA---ETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227

Query: 306 LLH 308
              
Sbjct: 228 FTE 230

Length = 242

>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 95.6 bits (237), Expect = 2e-22
 Identities = 78/231 (33%), Positives = 121/231 (52%), Gaps = 22/231 (9%)

Query: 84  NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQ 138
           N +F Y +R T  +L+ + L I+ N+V A +G SG GKSTF+  L +L +       +G+
Sbjct: 85  NFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGE 143

Query: 139 IYIDGFPLTDLDIRWL--REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQA 196
           IY  G       I  L  R +IG V Q+P   +M I  N+ YG P++    D +   K  
Sbjct: 144 IYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYG-PRNNGINDRKILEK-- 200

Query: 197 YVHEFILSLPCGYETLVDD-----DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 251
            + E  L     ++ + DD     + LSGGQ+QR+ IARAI  +P +LL+DE TSALD  
Sbjct: 201 -IVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPI 259

Query: 252 SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 301
           +   ++ ++  L    K K ++I++ H ++  + + D  V    G I E G
Sbjct: 260 ATAKIEELILEL----KKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAG 306

Length = 329

>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family

 Score = 93.1 bits (232), Expect = 2e-22
 Identities = 60/207 (28%), Positives = 106/207 (51%), Gaps = 13/207 (6%)

Query: 97  ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL---TDLDIRW 153
           +L  + L I   E+V + G SGSGK+T + L+  L    +G + + G  L   ++ ++  
Sbjct: 20  VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79

Query: 154 LREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETL 212
           LR  IG++ Q   LL  +  + N+           ++ +   +      + ++  G    
Sbjct: 80  LRRNIGYIFQAHNLLGFLTARQNVQMALE---LQPNLSYQEARERARAMLEAV--GLGDH 134

Query: 213 VD--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTK 270
           +D     LSGGQKQR+AIARA++  P ++L DE T+ALDS+S   V  ++  L  +    
Sbjct: 135 LDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGC- 193

Query: 271 RTVIVIAHRLSTIKAVDRIVVIDDGRI 297
            T++++ H    +   DRIV ++DG++
Sbjct: 194 -TILIVTHDNRILDVADRIVHMEDGKL 219

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220

>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 93.9 bits (233), Expect = 2e-22
 Identities = 74/249 (29%), Positives = 121/249 (48%), Gaps = 31/249 (12%)

Query: 79  HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE----- 133
            ++  N++  Y  +     L +V + I  N V A++G SG GKSTF+  L R+ +     
Sbjct: 12  QIKVENLNLWYGEKQA---LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNC 68

Query: 134 PSDGQIYIDGFPL--TDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK--DVKNEDI 189
             +G++ I+G  +   D+D+  LR+ +G V Q+P    M I  N+ YG P+      +D+
Sbjct: 69  RIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYG-PRIHGANKKDL 127

Query: 190 EWAAKQAYVHEFILSLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDE 243
           +   + A     + S     ET   D L      LSGGQ+QR+ IAR +   P I+L DE
Sbjct: 128 DGVVENA-----LRSAALWDET--SDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDE 180

Query: 244 ATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGN 302
            TSALD  S   ++ ++  L+ D     T++++ H +     + D       G +IE G 
Sbjct: 181 PTSALDPISTARIEDLIMNLKKD----YTIVIVTHNMQQAARISDYTGFFLMGELIEFGQ 236

Query: 303 HAELLHKGR 311
             ++ H  R
Sbjct: 237 TRQIFHNPR 245

Length = 258

>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional

 Score = 94.0 bits (234), Expect = 2e-22
 Identities = 76/222 (34%), Positives = 110/222 (49%), Gaps = 28/222 (12%)

Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-----GQIYIDGFPLTD--LD 150
           L  V L I    V A +G SG GKSTF+  L R+ +  D     G+I +DG  + D  LD
Sbjct: 35  LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94

Query: 151 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAK-QAYVHEFIL-SL-PC 207
           +  LR ++G V Q+P      I  N+ YG P+      I   A+ +A + E +  SL   
Sbjct: 95  VVELRARVGMVFQKPNPFPKSIYENVAYG-PR------IHGLARSKAELDEIVETSLRKA 147

Query: 208 GYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLH 261
           G    V D L      LSGGQ+QR+ IARAI   P ++L+DE  SALD  +   V+ ++ 
Sbjct: 148 GLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELID 207

Query: 262 ALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGN 302
            LR       T++++ H +     V  R      G ++EVG+
Sbjct: 208 ELR----QNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGD 245

Length = 267

>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 93.5 bits (232), Expect = 3e-22
 Identities = 69/224 (30%), Positives = 106/224 (47%), Gaps = 39/224 (17%)

Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT-------DLD 150
           L  + L    NE+ A++G SG GKST++  L R+ +   G        L        + D
Sbjct: 21  LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80

Query: 151 IRWLREKIGFVGQEPQLLQMDIKSNIMYGC------PKDVKNEDIEWAAKQAYV------ 198
           +  LR+++G V Q+P      I  N++YG        K V +E +E + KQA +      
Sbjct: 81  VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKD 140

Query: 199 --HEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 256
             HE  LSL             SGGQ+QR+ IAR +   P ++LLDE TSALD  S   +
Sbjct: 141 HLHESALSL-------------SGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQI 187

Query: 257 KGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIE 299
           + +L  LR+    + T+I++ H +     + D+      G +IE
Sbjct: 188 ENMLLELRD----QYTIILVTHSMHQASRISDKTAFFLTGNLIE 227

Length = 252

>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter

 Score = 92.3 bits (230), Expect = 3e-22
 Identities = 56/215 (26%), Positives = 103/215 (47%), Gaps = 25/215 (11%)

Query: 94  TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW 153
              +L+ + L ++  E+   +G +G+GK+T + ++L L +P  G+I  DG          
Sbjct: 12  KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEAL 71

Query: 154 LREKIGFVGQEPQL-LQMDIKSNI-----MYGCPKDVKNEDIEWAAKQAYVHEFILSLPC 207
              +IG + + P     +  + N+     + G  K   +E ++    +    + +     
Sbjct: 72  --RRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGF-- 127

Query: 208 GYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 267
                      S G KQR+ IA A+L +P +L+LDE T+ LD +    ++ ++ +LR   
Sbjct: 128 -----------SLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLR--- 173

Query: 268 KTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVG 301
               TV++ +H LS I K  DRI +I+ G++IE G
Sbjct: 174 DQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208

The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208

>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 92.8 bits (231), Expect = 6e-22
 Identities = 68/232 (29%), Positives = 117/232 (50%), Gaps = 20/232 (8%)

Query: 83  VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 142
            ++ + YP       L  +    E  E+VA++G +G+GKST       + +P+ G++ I 
Sbjct: 5   RDLKYSYPDGTEA--LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIK 62

Query: 143 GFPLTDLDIRWL---REKIGFVGQEP--QLLQMDIKSNIMYGCPKDVK--NEDIEWAAKQ 195
           G P+   D + L   R+ +G V Q P  QL    ++ ++ +G P ++    E++E   K+
Sbjct: 63  GEPI-KYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFG-PLNLGLSKEEVEKRVKE 120

Query: 196 AYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHY 255
           A +    +    G+E      L SGGQK+R+AIA  +   P I++LDE TS LD      
Sbjct: 121 A-LKAVGME---GFENKPPHHL-SGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQ 175

Query: 256 VKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAEL 306
           +  +L+ L    K   T+I+  H +  +    D++ V+ DG+II+ G   E+
Sbjct: 176 IMKLLYDLN---KEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEV 224

Length = 275

>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 92.9 bits (231), Expect = 7e-22
 Identities = 65/238 (27%), Positives = 116/238 (48%), Gaps = 22/238 (9%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           ++  ++ F Y        L  + L+I      A++G +G+GKST +  L  +Y P  G++
Sbjct: 5   IEVEDLHFRYKDGTKA--LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV 62

Query: 140 YIDGFPLTDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYG-----CPKDVKNEDIEWA 192
            + G  +   + +W+R K+G V Q+P  Q+    +  ++ +G       KD     +E A
Sbjct: 63  KVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEA 122

Query: 193 AKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 252
            K   + +F    P  Y        LS GQK+R+AIA  +  DP +++LDE  + LD   
Sbjct: 123 LKAVRMWDFRDKPP--YH-------LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRG 173

Query: 253 EHYVKGVLHALRNDCKTKRTVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGNHAELLHK 309
           +  +  +L  L N  K   TVIV  H +    +  D+++V+ +GR++  G+ + L  +
Sbjct: 174 QETLMEILDRLHNQGK---TVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDE 228

Length = 274

>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

 Score = 93.9 bits (234), Expect = 8e-22
 Identities = 68/214 (31%), Positives = 107/214 (50%), Gaps = 14/214 (6%)

Query: 97  ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 156
            L  + L+++  E V ++G SG GK+T + ++  L   + G IY  G  +T L  +  + 
Sbjct: 19  ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KR 76

Query: 157 KIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD 215
             G V Q   L   + +  NI YG    +KN  +  A     V E +L L  G       
Sbjct: 77  DYGIVFQSYALFPNLTVADNIAYG----LKNRGMGRAEVAERVAE-LLDL-VGLPGSERK 130

Query: 216 --DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTV 273
               LSGGQ+QR+A+ARA+   P +LLLDE  SALD+    +++  +  L+   +   T 
Sbjct: 131 YPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQR--RLGVTT 188

Query: 274 IVIAH-RLSTIKAVDRIVVIDDGRIIEVGNHAEL 306
           I++ H +   +   DRIVV++ G I +VG   E+
Sbjct: 189 IMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEI 222

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353

>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional

 Score = 96.0 bits (239), Expect = 8e-22
 Identities = 75/241 (31%), Positives = 119/241 (49%), Gaps = 28/241 (11%)

Query: 78   GHVQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 136
            G + F  +   Y  R  +P +L  V   I   E V IVG +GSGKST +   +R+ E   
Sbjct: 1307 GSLVFEGVQMRY--REGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCG 1364

Query: 137  GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI---MYGCPKDVKNEDIEWAA 193
            G+I ++G  +    +R LR +   + Q+P L    ++ N+   +     +V      WAA
Sbjct: 1365 GEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEV------WAA 1418

Query: 194  KQAY-VHEFILSLPCGYETLVDDDLL--SGGQKQRIAIARAIL-RDPAILLLDEATS--- 246
             +   + E + S   G ++ V +     S GQ+Q + +ARA+L +    +L+DEAT+   
Sbjct: 1419 LELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANID 1478

Query: 247  -ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAE 305
             ALD + +  V     A         TVI IAHRL T+   D+I+V+D G + E+G+  E
Sbjct: 1479 PALDRQIQATVMSAFSAY--------TVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRE 1530

Query: 306  L 306
            L
Sbjct: 1531 L 1531

Length = 1560

>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional

 Score = 92.1 bits (229), Expect = 8e-22
 Identities = 70/225 (31%), Positives = 109/225 (48%), Gaps = 36/225 (16%)

Query: 101 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--PS---DGQIYIDGFPL--TDLDIRW 153
           V L IE   V A +G SG GKST +  L R++E  P    +G++ +DG  L    +D   
Sbjct: 23  VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82

Query: 154 LREKIGFVGQEPQLL-QMDIKSNIMYGC------PKDVKNEDIEWAAKQAYVHEFI---L 203
           +R  IG V Q P     M I+ N++ G        K   +E +E + + A +   +   L
Sbjct: 83  VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRL 142

Query: 204 SLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 263
             P G         LSGGQ+QR+ IARAI  +P +LL+DE  SALD  S   ++ +++ L
Sbjct: 143 DKPGGG--------LSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINEL 194

Query: 264 RNDCKTKRTVIVIAHRLSTIKAV-DRIV------VIDDGRIIEVG 301
           + D     T++++ H +     V D+            GR++E+ 
Sbjct: 195 KQD----YTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEID 235

Length = 258

>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 92.0 bits (228), Expect = 9e-22
 Identities = 66/225 (29%), Positives = 120/225 (53%), Gaps = 25/225 (11%)

Query: 73  LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 132
           + +L+  ++  N+SF+Y    T  IL  V + I  ++V AI+G SG GKSTF+  L R+ 
Sbjct: 1   MSKLIPAIKVNNLSFYYD---TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMN 57

Query: 133 EPSDGQIYIDG--------FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC---- 180
           E  + ++ ++G             +++  LR ++  V  +P L  M +  N+ YG     
Sbjct: 58  E-LESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVG 116

Query: 181 --PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 238
             PK   ++ +E A K A + + I      +++ +D   LSGGQ+QR+ IARA+   P +
Sbjct: 117 WRPKLEIDDIVESALKDADLWDEIKHKI--HKSALD---LSGGQQQRLCIARALAVKPKV 171

Query: 239 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 283
           LL+DE    LD  +   V+ ++ +LR   +++ T+++++H L  +
Sbjct: 172 LLMDEPCFGLDPIASMKVESLIQSLR--LRSELTMVIVSHNLHQV 214

Length = 261

>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional

 Score = 92.8 bits (231), Expect = 1e-21
 Identities = 76/265 (28%), Positives = 120/265 (45%), Gaps = 59/265 (22%)

Query: 84  NISFHYPSR-PTV-PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI-- 139
           NI   +  + PT    L++V + I   E +AI+G +GSGK+TF+  L  L  P  G I  
Sbjct: 7   NIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEW 66

Query: 140 -YIDGFPLTDLD---------------------IRWLREKIGFVGQ--EPQLLQMDIKSN 175
            + D                             I+ +R ++G V Q  E QL +  I+ +
Sbjct: 67  IFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKD 126

Query: 176 IMYGCPKDV---KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL---------LSGGQK 223
           I++G P  +   K E  + AAK              Y  LV  D          LSGGQK
Sbjct: 127 IIFG-PVSMGVSKEEAKKRAAK--------------YIELVGLDESYLQRSPFELSGGQK 171

Query: 224 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL-ST 282
           +R+A+A  +  +P  L+ DE T+ LD +    VK +L    N  K  +T+I++ H L + 
Sbjct: 172 RRVALAGILAMEPDFLVFDEPTAGLDPQG---VKEILEIFDNLNKQGKTIILVTHDLDNV 228

Query: 283 IKAVDRIVVIDDGRIIEVGNHAELL 307
           ++   R +   DG+II+ G+  ++L
Sbjct: 229 LEWTKRTIFFKDGKIIKDGDTYDIL 253

Length = 305

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 94.6 bits (236), Expect = 1e-21
 Identities = 67/258 (25%), Positives = 110/258 (42%), Gaps = 56/258 (21%)

Query: 77  MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 136
           M  +   N+S  Y  RP   +L +V LT+   E + +VG +G+GKST + +L    EP  
Sbjct: 1   MSMITLENLSLAYGDRP---LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDS 57

Query: 137 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMD-IKSNIMYGCPK---------DVKN 186
           G++                 ++G++ QEP L     +   ++ G  +         +   
Sbjct: 58  GEVTRPK-----------GLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYA 106

Query: 187 EDIEWAAKQAYVHEFILSLPCGYET-----LVDDDL-----------LSGGQKQRIAIAR 230
              +   +     E +L    G+            L           LSGG ++R+A+AR
Sbjct: 107 LLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALAR 166

Query: 231 AILRDPAILLLDEATSALDSES----EHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV 286
           A+L +P +LLLDE T+ LD ES    E Y+K          +   TVIV++H    +  V
Sbjct: 167 ALLEEPDLLLLDEPTNHLDLESIEWLEDYLK----------RYPGTVIVVSHDRYFLDNV 216

Query: 287 -DRIVVIDDGRIIE-VGN 302
              I+ +D G++    GN
Sbjct: 217 ATHILELDRGKLTPYKGN 234

Length = 530

>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 90.9 bits (225), Expect = 2e-21
 Identities = 71/230 (30%), Positives = 117/230 (50%), Gaps = 35/230 (15%)

Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-----GQIYIDGFPL--TDLD 150
           L+ + L  E  E+ A++G SG GKSTF+  L R+ +  +     G+I  +G  +  + +D
Sbjct: 20  LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79

Query: 151 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP------KDVKNEDIEWAAKQAYVHEFILS 204
           +  LR+++G V Q+P      +  N+ YG        K++ ++ +E + KQA + +    
Sbjct: 80  LVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWK---- 135

Query: 205 LPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 258
                ET   D+L       SGGQ+QRI IARA+   P ++LLDE TSALD  S   ++ 
Sbjct: 136 -----ET--KDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEE 188

Query: 259 VLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 307
            L  L++      T I++ H L     + D+   + +G +IE G   E+ 
Sbjct: 189 TLMELKHQ----YTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234

Length = 251

>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily

 Score = 90.4 bits (225), Expect = 2e-21
 Identities = 63/220 (28%), Positives = 108/220 (49%), Gaps = 20/220 (9%)

Query: 92  RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD---GQIYIDGFPLTD 148
                ILN V L +E+ +V+AI+G SGSGK+T ++ +    E      GQI  +G P   
Sbjct: 17  NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR-- 74

Query: 149 LDIRWLREKIGFVGQEPQLLQ-MDIKSNIMYG--CPKDVKNEDIEWAAKQAYVHEFILSL 205
                 ++ + +V Q+  LL  + ++  + Y        K+ D   A ++  V E +L  
Sbjct: 75  -KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSD---AIRKKRV-EDVLLR 129

Query: 206 PCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 263
                 +  + +  +SGG+++R++IA  +L DP +L+LDE TS LDS +      ++  L
Sbjct: 130 DLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTAL---NLVSTL 186

Query: 264 RNDCKTKRTVIVIAH--RLSTIKAVDRIVVIDDGRIIEVG 301
               +  R VI+  H  R    +  DRI+++  G I+  G
Sbjct: 187 SQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226

The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226

>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 91.1 bits (226), Expect = 2e-21
 Identities = 71/226 (31%), Positives = 111/226 (49%), Gaps = 37/226 (16%)

Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFV---NLLLRL---YEPSDGQIYIDGFPLTD-LD 150
           L ++ L+I  NEV AI+G SG GKSTF+   NL++++    + +    Y     L   +D
Sbjct: 28  LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87

Query: 151 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK--DVKN-----EDIEWAAKQAYVHEFIL 203
           +  LR+ IG V Q+       I  N+ YG P+    KN     E +E + K   + +   
Sbjct: 88  LVELRKNIGMVFQKGNPFPQSIFDNVAYG-PRIHGTKNKKKLQEIVEKSLKDVALWD--- 143

Query: 204 SLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 257
                    V D L      LSGGQ+QR+ IARA+  +P +LL+DE TSALD  S   ++
Sbjct: 144 --------EVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIE 195

Query: 258 GVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGN 302
            ++  L    K K T++++ H +     V D+      G ++E  +
Sbjct: 196 ELILKL----KEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECND 237

Length = 259

>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 91.2 bits (226), Expect = 3e-21
 Identities = 71/243 (29%), Positives = 125/243 (51%), Gaps = 15/243 (6%)

Query: 84  NISFHYPSRPTVPI--LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 141
           N+S+ Y  +       LN+  LT + N+V  ++G +GSGKST + L   L     GQ  +
Sbjct: 11  NVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIV 70

Query: 142 DGFPLTD-----LDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCPKDVKNEDIEWAAK 194
             + +        +++ LR++IG V Q P  QL Q  I+ +I +G P ++  E+ + A K
Sbjct: 71  GDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFG-PVNL-GENKQEAYK 128

Query: 195 QAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 254
           +      ++ LP  Y      +L SGGQK+R+A+A  I  D   L+LDE T  LD + E 
Sbjct: 129 KVPELLKLVQLPEDYVKRSPFEL-SGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEE 187

Query: 255 YVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELLHKGRLY 313
               +    R + + K+ +I++ H +  + +  D ++V+ +G++I +G+  E+     L 
Sbjct: 188 DFINLF--ERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSNQELL 245

Query: 314 AKL 316
            K+
Sbjct: 246 TKI 248

Length = 289

>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit

 Score = 89.0 bits (221), Expect = 3e-21
 Identities = 64/202 (31%), Positives = 98/202 (48%), Gaps = 29/202 (14%)

Query: 89  YPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL-- 146
           YP  P V  L  +    E  EV+A++G +G+GKST +  L  L  P  G + IDG PL  
Sbjct: 1   YPGGPEV--LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDY 58

Query: 147 TDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILS 204
           +   +   R+++G V Q+P  QL   D+  ++ +G P ++   + E   +   V E +  
Sbjct: 59  SRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFG-PLNLGLSEAEVERR---VREAL-- 112

Query: 205 LPCGYETLVDDD--------LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 256
                 T V            LSGG+K+R+AIA A+   P +LLLDE T+ LD      +
Sbjct: 113 ------TAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQM 166

Query: 257 KGVLHALRNDCKTKRTVIVIAH 278
             +L  LR +     TV++  H
Sbjct: 167 LAILRRLRAEGM---TVVISTH 185

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190

>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional

 Score = 90.0 bits (224), Expect = 3e-21
 Identities = 71/221 (32%), Positives = 108/221 (48%), Gaps = 38/221 (17%)

Query: 103 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG 162
           LT+E  E VAI+G SG+GKST +NL+     P+ G + ++G   T       R  +  + 
Sbjct: 20  LTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVSMLF 77

Query: 163 QEPQLL-QMDIKSNIMYGCPKDVK-----NEDIEWAAKQAYVHEFILSLPCGYETLVDDD 216
           QE  L   + +  NI  G    +K      E +   A+Q  + + +  LP          
Sbjct: 78  QENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQ-------- 129

Query: 217 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND--------CK 268
            LSGGQ+QR+A+AR ++R+  ILLLDE  SALD            ALR +        C+
Sbjct: 130 -LSGGQRQRVALARCLVREQPILLLDEPFSALDP-----------ALRQEMLTLVSQVCQ 177

Query: 269 TKR-TVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGNHAELL 307
            ++ T+++++H L    +   R +V+ DGRI   G   ELL
Sbjct: 178 ERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELL 218

Length = 232

>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 90.8 bits (225), Expect = 4e-21
 Identities = 65/225 (28%), Positives = 112/225 (49%), Gaps = 12/225 (5%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           ++  N+S+ YP     P L ++ L I+  E + I+G +GSGKST    L  L  P  G++
Sbjct: 2   IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59

Query: 140 YIDGFPLTDLD-IRWLREKIGFVGQEP--QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQA 196
            + G    D   ++ +R+ +G V Q P  Q +   ++ ++ +G P+++    IE   +  
Sbjct: 60  LVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFG-PENLCLPPIEIRKR-- 116

Query: 197 YVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 256
            V   +  +            LSGGQ Q +A+A  +  +P  L+ DE TS LD +S    
Sbjct: 117 -VDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSG--- 172

Query: 257 KGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 301
             VL  ++   +  +T++ I H L  +   DRI+V+D G+I+  G
Sbjct: 173 IAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEG 217

Length = 274

>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed

 Score = 91.9 bits (229), Expect = 5e-21
 Identities = 69/229 (30%), Positives = 110/229 (48%), Gaps = 23/229 (10%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           V+   IS  +  +    +++++ LTI   E + ++G SG GK+T + L+     P  G+I
Sbjct: 15  VELRGISKSFDGKE---VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI 71

Query: 140 YIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYG-----CPKDVKNEDIEWAA 193
            +DG  +T +        +  V Q   L   M +  N+ +G      P       +  A 
Sbjct: 72  MLDGQDITHVPAE--NRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEAL 129

Query: 194 KQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 253
           +   + EF    P           LSGGQ+QR+AIARA++  P +LLLDE+ SALD +  
Sbjct: 130 RMVQLEEFAQRKP---------HQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLR 180

Query: 254 HYVKGVLHALRNDCKTKRTVIVIAH-RLSTIKAVDRIVVIDDGRIIEVG 301
             ++  L AL+   K   T + + H +   +   DRIVV+ DGRI + G
Sbjct: 181 KQMQNELKALQR--KLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDG 227

Length = 375

>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 91.0 bits (226), Expect = 5e-21
 Identities = 73/242 (30%), Positives = 113/242 (46%), Gaps = 56/242 (23%)

Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----------PSDGQ-IYIDGFP 145
           L  V + I    V A++G SG GKSTF+  L R+ +             DGQ IY DG  
Sbjct: 61  LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120

Query: 146 LTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK------------------DVKNE 187
           L +L     R+++G V Q P      I+ NI YG  K                  D ++E
Sbjct: 121 LVEL-----RKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDE 175

Query: 188 DIEWAAKQAYVHEFILSLPCGYETLVDDDL-LSGGQKQRIAIARAILRDPAILLLDEATS 246
            +E + +QA + + +       + L D+ L LSGGQ+QR+ IAR +  DP ++L+DE  S
Sbjct: 176 LVERSLRQAALWDEV------NDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPAS 229

Query: 247 ALDSESEHYVKGVLHALRNDCKTKRTVIVIAH------RLSTIKAVDRIVVIDDGRIIEV 300
           ALD  +   ++ ++  L  +     TV+V+ H      R+S   A    V +  G ++E 
Sbjct: 230 ALDPIATSKIEDLIEELAEE----YTVVVVTHNMQQAARISDQTA----VFLTGGELVEY 281

Query: 301 GN 302
            +
Sbjct: 282 DD 283

Length = 305

>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional

 Score = 93.6 bits (233), Expect = 6e-21
 Identities = 70/238 (29%), Positives = 121/238 (50%), Gaps = 25/238 (10%)

Query: 84  NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-RLYEPSDGQIYID 142
           N  F + S+   P L+++ L +    +VAIVG +G GK++ ++ +L  L   SD  + I 
Sbjct: 619 NGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIR 678

Query: 143 GFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVK--NEDIEWAAKQAYVHE 200
           G              + +V Q   +    ++ NI++G P D +     I+  A Q   H+
Sbjct: 679 G-------------TVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQ---HD 722

Query: 201 FILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 258
             L LP G  T + +    +SGGQKQR+++ARA+  +  + + D+  SALD+   H  + 
Sbjct: 723 LDL-LPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDA---HVGRQ 778

Query: 259 VLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKL 316
           V      D    +T +++ ++L  +  VDRI+++ +G I E G + EL + G L+ KL
Sbjct: 779 VFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKL 836

Length = 1622

>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional

 Score = 92.7 bits (231), Expect = 6e-21
 Identities = 68/215 (31%), Positives = 111/215 (51%), Gaps = 17/215 (7%)

Query: 93  PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDL 149
             V  L++V L + A E+V++ G +G+GKST + +L  +Y P    +G+I  +G  L   
Sbjct: 16  GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHGTYEGEIIFEGEELQAS 74

Query: 150 DIRWLREK-IGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFI--LSL 205
           +IR      I  + QE  L+ ++ +  NI  G  +      +++ A      + +  L L
Sbjct: 75  NIRDTERAGIAIIHQELALVKELSVLENIFLGN-EITPGGIMDYDAMYLRAQKLLAQLKL 133

Query: 206 PCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRN 265
                T V +  L  GQ+Q + IA+A+ +   +L+LDE T++L +ESE     VL  +  
Sbjct: 134 DINPATPVGN--LGLGQQQLVEIAKALNKQARLLILDEPTASL-TESE---TAVLLDIIR 187

Query: 266 DCKTKR-TVIVIAHRLSTIKAV-DRIVVIDDGRII 298
           D K      I I+H+L+ +KA+ D I VI DGR I
Sbjct: 188 DLKAHGIACIYISHKLNEVKAISDTICVIRDGRHI 222

Length = 506

>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

 Score = 91.2 bits (226), Expect = 8e-21
 Identities = 61/218 (27%), Positives = 100/218 (45%), Gaps = 19/218 (8%)

Query: 97  ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS--DGQIYIDGFPLTDLDIRWL 154
           +L+ + L IEA E++A++G SG GK+T +  +    + +   G+I I    LT       
Sbjct: 20  VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPH-- 77

Query: 155 REKIGFVGQEPQLL-QMDIKSNIMYGC-----PKDVKNEDIEWAAKQAYVHEFILSLPCG 208
           +  +  + Q   L   + ++ N+ +G      PK    E +  A K   + +    LP  
Sbjct: 78  KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQ 137

Query: 209 YETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCK 268
                    LSGG +QRIAIARAI  +P +LLLDE  SALD+     ++  + AL  +  
Sbjct: 138 ---------LSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELP 188

Query: 269 TKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAEL 306
               + V   +   +   D+  ++ DGR+   G    L
Sbjct: 189 ELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362

>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP)

 Score = 93.1 bits (231), Expect = 9e-21
 Identities = 66/231 (28%), Positives = 119/231 (51%), Gaps = 30/231 (12%)

Query: 96  PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 155
           P LN +  +I    +VA+VG  G GKS+ ++ LL   +  +G +++ G            
Sbjct: 652 PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG------------ 699

Query: 156 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVK--NEDIEWAAKQAYVHEFILSLPCGYETLV 213
             + +V Q+  +    ++ NI++G   + K   + +E  A    +      LP G  T +
Sbjct: 700 -SVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLE----ILPSGDRTEI 754

Query: 214 DDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSE-SEH---YVKGVLHALRNDC 267
            +    LSGGQKQR+++ARA+  +  I L D+  SA+D+   +H   +V G    L+N  
Sbjct: 755 GEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKN-- 812

Query: 268 KTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK 318
              +T I++ H +S +  VD I+V+  G+I E+G++ ELL +   +A+ ++
Sbjct: 813 ---KTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLR 860

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score = 88.6 bits (220), Expect = 9e-21
 Identities = 57/216 (26%), Positives = 105/216 (48%), Gaps = 19/216 (8%)

Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 157
           +  V   +   E+  ++G +G+GK+T + +L  L +P+ G+  + G  +   + R +R +
Sbjct: 16  VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRR 74

Query: 158 IGFVGQEPQL-LQMDIKSNI-----MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET 211
           IG V Q+  +  ++    N+     +YG P   + E I+       + E    L   Y  
Sbjct: 75  IGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTY-- 132

Query: 212 LVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 271
                  SGG ++R+ IAR+++  P +L LDE T  LD ++  +V   +  L+ +     
Sbjct: 133 -------SGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGM-- 183

Query: 272 TVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAEL 306
           T+++  H +   + + DR+ +ID GRII  G   EL
Sbjct: 184 TILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional

 Score = 90.0 bits (224), Expect = 1e-20
 Identities = 74/268 (27%), Positives = 124/268 (46%), Gaps = 60/268 (22%)

Query: 80  VQFVNISFHYPSR-------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 132
           +Q +++  HYP +         V  L+ V  T+E  + +A+VG SG GKST   LL  + 
Sbjct: 6   LQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIE 65

Query: 133 EPSDGQIYIDGFPLTDLD---IRWLREKIGFVGQEP-----------QLLQ--MDIKSNI 176
            P+ G++Y  G  L   D    + LR+KI  V Q P           Q+L+  + I +++
Sbjct: 66  TPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSL 125

Query: 177 MYGCPKDVKNEDIEWAAK--------QAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 228
                 + + + +   AK          Y H F                 SGGQ+QRIAI
Sbjct: 126 ---SAAERREKALAMMAKVGLRPEHYDRYPHMF-----------------SGGQRQRIAI 165

Query: 229 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-D 287
           ARA++ DP +++ DE  SALD   +  V  ++  L+ +     + + I+H LS ++ + D
Sbjct: 166 ARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGL--SYVFISHDLSVVEHIAD 223

Query: 288 RIVVIDDGRIIEVGNHAELLHKGRLYAK 315
            ++V+  GR +E G       K +++  
Sbjct: 224 EVMVMYLGRCVEKGT------KEQIFNN 245

Length = 327

>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 89.1 bits (221), Expect = 1e-20
 Identities = 72/234 (30%), Positives = 117/234 (50%), Gaps = 17/234 (7%)

Query: 89  YPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD 148
           Y    +   LN++      N  +A++G +G+GKST       + +P+ G + I G P+T 
Sbjct: 11  YSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITK 70

Query: 149 LDIRWLREKIGFVGQEP--QLLQMDIKSNIMYG-CPKDVKNEDIEWAAKQAYVHEFILSL 205
            +IR +R+ +G V Q P  Q+    ++ +I +G     +  E +      A +H      
Sbjct: 71  ENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSA-LHML---- 125

Query: 206 PCGYETLVD--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 263
             G E L D     LSGG+K+R+AIA  I  +P +L+LDE T+ LD +    VK ++  L
Sbjct: 126 --GLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQG---VKELIDFL 180

Query: 264 RNDCKT-KRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHKGRLYAK 315
            +  +T   TVI   H+L  +  + D I V+D GRI+  G   E+  +  L A+
Sbjct: 181 NDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPDLLAR 234

Length = 277

>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional

 Score = 92.0 bits (228), Expect = 2e-20
 Identities = 77/288 (26%), Positives = 141/288 (48%), Gaps = 28/288 (9%)

Query: 37  MVDNLSSLLQSIGATEKVFQLIDLLPSNQ-FLSEGVKLQRLMGHVQFVNISFHYPSRPTV 95
           M+ NL S  Q + A   + ++ +LL S +  L++   LQ     +   N  F + S+ + 
Sbjct: 573 MLPNLLS--QVVNANVSLQRIEELLLSEERILAQNPPLQPGAPAISIKNGYFSWDSKTSK 630

Query: 96  PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 155
           P L+ + L I    +VAIVG +G GK++ ++ +L     ++          + + IR   
Sbjct: 631 PTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAET---------SSVVIR--- 678

Query: 156 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD 215
             + +V Q   +    ++ NI++G   D ++E   W A      +  L L  G +     
Sbjct: 679 GSVAYVPQVSWIFNATVRENILFG--SDFESERY-WRAIDVTALQHDLDLLPGRDLTEIG 735

Query: 216 DL---LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV--KGVLHALRNDCKTK 270
           +    +SGGQKQR+++ARA+  +  I + D+  SALD+   H V    +   L+      
Sbjct: 736 ERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKG----- 790

Query: 271 RTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK 318
           +T +++ ++L  +  +DRI+++ +G I E G  AEL   G L+ KL++
Sbjct: 791 KTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLME 838

Length = 1495

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 91.2 bits (227), Expect = 2e-20
 Identities = 73/261 (27%), Positives = 109/261 (41%), Gaps = 56/261 (21%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL------YE 133
           ++ ++++FH     TV  +  +   IEA E +A+VG SGSGKS     +L L        
Sbjct: 9   IRNLSVAFHQEGG-TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAH 67

Query: 134 PSDGQIYIDGFPLTDLDIRWLR----EKIGFVGQEP------------QLLQMDIKSNIM 177
           PS G I  DG  L     R LR     KIG + QEP            QL ++      +
Sbjct: 68  PS-GSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGL 126

Query: 178 YGCPKDVKNEDIEW----------AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 227
                  +   +E               AY HE                 LSGGQ+QR+ 
Sbjct: 127 SR--AAARARALELLELVGIPEPEKRLDAYPHE-----------------LSGGQRQRVM 167

Query: 228 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV- 286
           IA A+  +P +L+ DE T+ALD   +  +  +L  L+   +    ++ I H L  ++   
Sbjct: 168 IAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQA--ELGMAILFITHDLGIVRKFA 225

Query: 287 DRIVVIDDGRIIEVGNHAELL 307
           DR+ V+  G I+E G    L 
Sbjct: 226 DRVYVMQHGEIVETGTTETLF 246

Length = 534

>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 88.0 bits (218), Expect = 2e-20
 Identities = 72/234 (30%), Positives = 118/234 (50%), Gaps = 29/234 (12%)

Query: 95  VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--PS---DGQIYIDGFPLTDL 149
           V +L+ V L I  N + A++G SGSGKST + +  RL E  P     G++Y+DG  +  +
Sbjct: 16  VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKM 75

Query: 150 DIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKD--VKN-----EDIEWAAKQAYVHEF 201
           D+  LR ++  V Q P  +  + I  N+  G   +  VK+     E + WA ++A + + 
Sbjct: 76  DVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDE 135

Query: 202 I---LSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 258
           +   L  P G         LSGGQ+QR+ IARA+   P +LL DE T+ LD E+   ++ 
Sbjct: 136 VKDRLDAPAGK--------LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIES 187

Query: 259 VLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHKGR 311
           +   L+ D     T++++ H       + D +  +  G+I+E G   E+    R
Sbjct: 188 LFLELKKD----MTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTNPR 237

Length = 250

>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional

 Score = 89.9 bits (224), Expect = 2e-20
 Identities = 65/212 (30%), Positives = 109/212 (51%), Gaps = 26/212 (12%)

Query: 101 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR-WL---RE 156
           V LT+ A  + AI G SG+GK++ +N +  L  P  G+I ++G  L D +    L   + 
Sbjct: 17  VNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76

Query: 157 KIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEF--ILSLPCGYETLV 213
           +IG+V Q+ +L     ++ N+ YG         +          +F  I++L  G E L+
Sbjct: 77  RIGYVFQDARLFPHYKVRGNLRYGM----AKSMVA---------QFDKIVAL-LGIEPLL 122

Query: 214 D--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 271
           D     LSGG+KQR+AI RA+L  P +LL+DE  ++LD   +  +   L  L  +     
Sbjct: 123 DRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIP- 181

Query: 272 TVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGN 302
            ++ ++H L  I +  DR+VV++ G++   G 
Sbjct: 182 -ILYVSHSLDEILRLADRVVVLEQGKVKAFGP 212

Length = 352

>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 88.2 bits (218), Expect = 2e-20
 Identities = 76/226 (33%), Positives = 114/226 (50%), Gaps = 27/226 (11%)

Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL--------TDL 149
           LN++ + I  N + A++G SG GKSTF+  L R+ +  +G I I+G  +         + 
Sbjct: 23  LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEG-IKIEGNVIYEGKNIYSNNF 81

Query: 150 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP----KDVK--NEDIEWAAKQAYVHEFIL 203
           DI  LR KIG V Q P    M I  NI YG      KD K  +E +E + K++ +   + 
Sbjct: 82  DILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV- 140

Query: 204 SLPCGYETLVDDDL-LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHA 262
                 + L  + L LSGGQ+QR+ IAR +  +P ++L+DE TSALD  S     G +  
Sbjct: 141 -----KDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPIS----TGKIEE 191

Query: 263 LRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 307
           L  + K   T+I++ H +     + DR     +G I E  +  EL 
Sbjct: 192 LIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF 237

Length = 254

>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 88.2 bits (218), Expect = 3e-20
 Identities = 73/238 (30%), Positives = 118/238 (49%), Gaps = 23/238 (9%)

Query: 84  NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 143
           NIS  Y       IL  + + I  N +  I+G SGSGKST + +L RL E  D +I +DG
Sbjct: 12  NISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDG 71

Query: 144 FPLT------DLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQA 196
             L        +D   LR+++G V Q+P     + I  NI Y     +K+  I+   +  
Sbjct: 72  KVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAY----PLKSHGIKEKREIK 127

Query: 197 YVHEFILSLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDS 250
            + E  L    G    V D L      LSGGQ+QR+ IARA+   P +LL+DE TS +D 
Sbjct: 128 KIVEECLR-KVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDI 186

Query: 251 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 307
            +   ++ ++  L+N+      +++++H    +  V D +  + +G ++E G+  E+ 
Sbjct: 187 VNSQAIEKLITELKNEI----AIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF 240

Length = 257

>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system

 Score = 87.2 bits (217), Expect = 3e-20
 Identities = 63/238 (26%), Positives = 121/238 (50%), Gaps = 33/238 (13%)

Query: 83  VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 142
            N+S  Y  R    ++N V L+++  E+V ++G +G+GK+T   +++ L +P  G+I +D
Sbjct: 4   ENLSKRYGKRK---VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLD 60

Query: 143 GFPLTDLDI-RWLREKIGFVGQEPQLL-QMDIKSNIM-----YGCPKDVKNEDIEWAAKQ 195
           G  +T L + +  R  IG++ QE  +  ++ ++ NI+      G  K  + E +E     
Sbjct: 61  GQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLE----- 115

Query: 196 AYVHEF-ILSL---PCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 251
             + EF I  L               LSGG+++R+ IARA+  +P  LLLDE  + +D  
Sbjct: 116 ELLEEFHITHLRKSKASS--------LSGGERRRVEIARALATNPKFLLLDEPFAGVDPI 167

Query: 252 SEHYVKGVLHALRNDCKTKRTVIVIA-HRLS-TIKAVDRIVVIDDGRIIEVGNHAELL 307
           +   ++ ++  L++    +   ++I  H +  T+   DR  +I +G+++  G   E+ 
Sbjct: 168 AVQDIQKIIKILKD----RGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIA 221

The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232

>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 88.4 bits (219), Expect = 3e-20
 Identities = 70/246 (28%), Positives = 119/246 (48%), Gaps = 35/246 (14%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           ++   ++++Y        L  + + I+  EV AI+G +G+GKST    L  + +PS G+I
Sbjct: 6   LKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63

Query: 140 YIDGFPL--TDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGC-----PKDVKNEDIE 190
             DG P+  +   +  LRE +G V Q+P  QL    +  ++ +G      P+D   + ++
Sbjct: 64  LFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVD 123

Query: 191 WAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSAL 248
            A K+            G E L D     LS GQK+R+AIA  ++ +P +L+LDE T+ L
Sbjct: 124 NALKRT-----------GIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGL 172

Query: 249 D----SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 303
           D    SE    +  +   L        T+I+  H +  +    D + V+ +GR+I  GN 
Sbjct: 173 DPMGVSEIMKLLVEMQKEL------GLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNP 226

Query: 304 AELLHK 309
            E+  +
Sbjct: 227 KEVFAE 232

Length = 283

>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

 Score = 87.5 bits (217), Expect = 4e-20
 Identities = 60/228 (26%), Positives = 112/228 (49%), Gaps = 24/228 (10%)

Query: 92  RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI 151
           R TV  +  +  T+   + +AI+G +GSGKST   +L  + EP+ G++ ID  PL   D 
Sbjct: 23  RQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82

Query: 152 RWLREKIGFVGQEP-----------QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHE 200
            +  ++I  + Q+P           Q+L   ++ N       D++ E  E    +     
Sbjct: 83  SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLN------TDLEPEQREKQIIETLRQV 136

Query: 201 FILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL 260
            +L     Y       +L+ GQKQR+ +ARA++  P +++ DEA ++LD      +  ++
Sbjct: 137 GLLPDHASYYP----HMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLM 192

Query: 261 HALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 307
             L+   K   + I +   L  +K + D+++V+  G ++E G+ A++L
Sbjct: 193 LELQE--KQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVL 238

Length = 267

>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 87.4 bits (217), Expect = 5e-20
 Identities = 57/214 (26%), Positives = 106/214 (49%), Gaps = 16/214 (7%)

Query: 96  PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 155
             LN + L I   + V ++G +G+GKST +N +    +P+ GQI IDG  +T   +    
Sbjct: 20  RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRA 79

Query: 156 EKIGFVGQEPQL---LQMDIKSNIMYGCPKDVKNEDIEW-----AAKQAYVHEFILSLPC 207
             +  V Q+P      ++ I+ N+      + + +           +++   E +  L  
Sbjct: 80  NLLARVFQDPLAGTAPELTIEENLALA---ESRGKKRGLSSALNERRRSSFRERLARLGL 136

Query: 208 GYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRN 265
           G E  + D   LLSGGQ+Q +++  A L  P ILLLDE T+ALD ++  +V  +   +  
Sbjct: 137 GLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVE 196

Query: 266 DCKTKRTVIVIAHRL-STIKAVDRIVVIDDGRII 298
             + K T +++ H +   +   +R++++  G+I+
Sbjct: 197 --EHKLTTLMVTHNMEDALDYGNRLIMLHSGKIV 228

Length = 263

>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional

 Score = 88.9 bits (221), Expect = 5e-20
 Identities = 73/246 (29%), Positives = 111/246 (45%), Gaps = 37/246 (15%)

Query: 77  MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 136
           M  V   N++  Y     V I   + L I   E V  VG SG GKST + ++  L + + 
Sbjct: 1   MASVTLRNVTKAYG---DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITS 57

Query: 137 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCP-KDVKNEDIEWAAK 194
           G ++I    + D+        +G V Q   L   + +  N+ +G      K E+I     
Sbjct: 58  GDLFIGEKRMNDVPPA--ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVN 115

Query: 195 QAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 252
           Q      +L L      L+D     LSGGQ+QR+AI R ++ +P++ LLDE  S LD+  
Sbjct: 116 QV---AEVLQL----AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-- 166

Query: 253 EHYVKGVLHALRNDC---------KTKRTVIVIAH-RLSTIKAVDRIVVIDDGRIIEVGN 302
                    ALR            +  RT+I + H ++  +   D+IVV+D GR+ +VG 
Sbjct: 167 ---------ALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGK 217

Query: 303 HAELLH 308
             EL H
Sbjct: 218 PLELYH 223

Length = 369

>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional

 Score = 87.3 bits (216), Expect = 5e-20
 Identities = 75/230 (32%), Positives = 116/230 (50%), Gaps = 28/230 (12%)

Query: 97  ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT---DLD--- 150
           +L  V L   A +V++I+G SGSGKSTF+  +  L +PS+G I ++G  +    D D   
Sbjct: 20  VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79

Query: 151 -------IRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDV----KNEDIEWAAKQAYV 198
                  +R LR ++  V Q   L   M +  N+M   P  V    K E  E A K  Y+
Sbjct: 80  KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA-PIQVLGLSKQEARERAVK--YL 136

Query: 199 HEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 258
            +  +      +  V    LSGGQ+QR++IARA+  +P +LL DE TSALD E    V  
Sbjct: 137 AKVGIDERAQGKYPVH---LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPE---LVGE 190

Query: 259 VLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 307
           VL  ++   +  +T++V+ H +   + V   ++ +  G+I E G   +L 
Sbjct: 191 VLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLF 240

Length = 257

>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C

 Score = 87.6 bits (217), Expect = 6e-20
 Identities = 60/204 (29%), Positives = 104/204 (50%), Gaps = 11/204 (5%)

Query: 97  ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 156
           +L ++  +I   + V ++G +GSGKST ++  LRL   ++G I IDG     + ++  R+
Sbjct: 19  VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRK 77

Query: 157 KIGFVGQEPQLLQMDIKSNI-MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE-TLVD 214
             G + Q+  +     + N+  YG   D   E+I   A++  +   I   P   +  LVD
Sbjct: 78  AFGVIPQKVFIFSGTFRKNLDPYGKWSD---EEIWKVAEEVGLKSVIEQFPGQLDFVLVD 134

Query: 215 DD-LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTV 273
              +LS G KQ + +AR++L    ILLLDE ++ LD  +   ++  L     DC    TV
Sbjct: 135 GGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADC----TV 190

Query: 274 IVIAHRLSTIKAVDRIVVIDDGRI 297
           I+  HR+  +    R +VI++ ++
Sbjct: 191 ILSEHRIEAMLECQRFLVIEENKV 214

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275

>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA

 Score = 86.6 bits (215), Expect = 6e-20
 Identities = 63/215 (29%), Positives = 104/215 (48%), Gaps = 8/215 (3%)

Query: 86  SFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 145
           S        V  L  +  TIE  E+V  +G +G+GK+T + +L  L +P+ G++ + G  
Sbjct: 25  SLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLV 84

Query: 146 LTDLDIRWLREKIGFV-GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILS 204
                 ++LR +IG V GQ+ QL   D+     +     +   D+  A  +  + E    
Sbjct: 85  PWKRRKKFLR-RIGVVFGQKTQLW-WDLPVIDSFYLLAAIY--DLPPARFKKRLDELSEL 140

Query: 205 LPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALR 264
           L            LS GQ+ R  IA A+L +P IL LDE T  LD  ++  ++  L    
Sbjct: 141 LDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYN 200

Query: 265 NDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRII 298
            +  T  TV++ +H +  I+A+  R++VID GR++
Sbjct: 201 RERGT--TVLLTSHYMKDIEALARRVLVIDKGRLL 233

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236

>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component

 Score = 85.7 bits (213), Expect = 6e-20
 Identities = 70/226 (30%), Positives = 108/226 (47%), Gaps = 49/226 (21%)

Query: 97  ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWL 154
           IL  V LTI+  EV A++G +GSGKST    ++    YE ++G+I   G  +TDL     
Sbjct: 15  ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPE-E 73

Query: 155 REKIG-FVG-QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETL 212
           R ++G F+  Q P  +               VKN D            F+  +  G    
Sbjct: 74  RARLGIFLAFQYPPEIPG-------------VKNAD------------FLRYVNEG---- 104

Query: 213 VDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRT 272
                 SGG+K+R  I + +L +P + +LDE  S LD ++   V  V++ LR +    ++
Sbjct: 105 -----FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREE---GKS 156

Query: 273 VIVIAHR---LSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAK 315
           V++I H    L  IK  DR+ V+ DGRI++ G+  EL     +  K
Sbjct: 157 VLIITHYQRLLDYIKP-DRVHVLYDGRIVKSGD-KELAL--EIEKK 198

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200

>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 87.5 bits (216), Expect = 7e-20
 Identities = 70/240 (29%), Positives = 118/240 (49%), Gaps = 29/240 (12%)

Query: 83  VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY-- 140
           VN++  +  +    +L+ V +   A  V +++G +GSGK+TF+  L R+ +   G  Y  
Sbjct: 25  VNLTLGFAGKT---VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSG 81

Query: 141 ---IDGFPLTDL-DIRWLREKIGFVGQEPQLLQMDIKSNIMYG--CPKDVKNEDIEWAAK 194
              + G  + +  D+   R ++G + Q P    M I  N++ G    K V  ++    A 
Sbjct: 82  DVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVA- 140

Query: 195 QAYVHEFILSLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSAL 248
           QA + E       G    V D L      LSGGQ+Q + +AR +  +P +LLLDE TSAL
Sbjct: 141 QARLTE------VGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSAL 194

Query: 249 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 307
           D  +   ++  + +L +    + TVI++ H L+    + DR  +  DGR++E G   +L 
Sbjct: 195 DPTTTEKIEEFIRSLAD----RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLF 250

Length = 276

>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional

 Score = 87.1 bits (216), Expect = 7e-20
 Identities = 69/214 (32%), Positives = 105/214 (49%), Gaps = 35/214 (16%)

Query: 84  NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--PS---DGQ 138
           N++ +Y S   V    +V L I  N++ A +G SG GKST +    RL +  P    +G+
Sbjct: 15  NLNVYYGSFLAV---KNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGK 71

Query: 139 IYIDGFPLTDLDIR--WLREKIGFVGQEPQLLQMDIKSNIMYGCP----KDVKNEDIEWA 192
           +   G  L   D+    +R +IG V Q+P      I  NI YG      K   +E +E +
Sbjct: 72  VTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERS 131

Query: 193 AKQAYVHEFILSLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATS 246
            +QA + +            V D L      LSGGQ+QR+ IARAI   P ++L+DE  S
Sbjct: 132 LRQAALWD-----------EVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCS 180

Query: 247 ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL 280
           ALD  S   ++ ++H L    K + T+I++ H +
Sbjct: 181 ALDPISTLRIEELMHEL----KEQYTIIIVTHNM 210

Length = 264

>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit

 Score = 87.9 bits (218), Expect = 9e-20
 Identities = 61/205 (29%), Positives = 95/205 (46%), Gaps = 28/205 (13%)

Query: 113 IVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMD 171
           ++G SG GK+T + LL    +P  G I +DG  +T++        I  V Q   L   M 
Sbjct: 1   LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPH--LRHINMVFQSYALFPHMT 58

Query: 172 IKSNIMYGCPKD-VKNEDIEWAAKQAY--VH--EFILSLPCGYETLVDDDLLSGGQKQRI 226
           ++ N+ +G     V   +I+    +A   V   EF    P           LSGGQ+QR+
Sbjct: 59  VEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQ---------LSGGQQQRV 109

Query: 227 AIARAILRDPAILLLDEATSALD----SESEHYVKGVLHALRNDCKTKRTVIVIAHRLS- 281
           A+ARA++  P ILLLDE  SALD     + +  +K +   L        T + + H    
Sbjct: 110 ALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL------GITFVFVTHDQEE 163

Query: 282 TIKAVDRIVVIDDGRIIEVGNHAEL 306
            +   DRI ++  G+I ++G   E+
Sbjct: 164 AMTMSDRIAIMRKGKIAQIGTPEEI 188

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325

>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C

 Score = 85.8 bits (212), Expect = 9e-20
 Identities = 59/211 (27%), Positives = 109/211 (51%), Gaps = 13/211 (6%)

Query: 93  PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY----IDGFPLTD 148
             +  L+++ + I   ++  IVG  G GKS+ +  +L   +  +G+++     +  P  +
Sbjct: 12  SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFE 71

Query: 149 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCG 208
                 R  + +  Q+P LL   ++ NI +G P     +  +       +   I  LP G
Sbjct: 72  ATRSRNRYSVAYAAQKPWLLNATVEENITFGSP--FNKQRYKAVTDACSLQPDIDLLPFG 129

Query: 209 YETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSE-SEHYVK-GVLHALR 264
            +T + +    LSGGQ+QRI +ARA+ ++  I+ LD+  SALD   S+H ++ G+L  L+
Sbjct: 130 DQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQ 189

Query: 265 NDCKTKRTVIVIAHRLSTIKAVDRIVVIDDG 295
           +D   KRT++++ H+L  +   D I+ + DG
Sbjct: 190 DD---KRTLVLVTHKLQYLPHADWIIAMKDG 217

The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 88.8 bits (221), Expect = 1e-19
 Identities = 56/226 (24%), Positives = 104/226 (46%), Gaps = 19/226 (8%)

Query: 89  YPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP-LT 147
              R    + + V   + A E+V I G++G+G+S  V  +  L +P+ G+I ++G   L 
Sbjct: 266 KDRRGVTAVKD-VSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLG 324

Query: 148 DLDIRWLREK-IGFVGQEPQ----LLQMDIKSNIMYGC---PKDVKNEDIEWAAKQAYVH 199
            L  R  R   + +V ++      +L + +  N++ G        +   ++  A + +  
Sbjct: 325 RLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFAR 384

Query: 200 EFILSL---PCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 256
           E I          +       LSGG +Q++ +AR + R P +L+  + T  LD  +  ++
Sbjct: 385 ELIEEFDVRAPSPDAPA--RSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFI 442

Query: 257 KGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 301
              L  LR+  K    V++I+  L  I  + DRI VI +GRI+ + 
Sbjct: 443 HERLLELRDAGK---AVLLISEDLDEILELSDRIAVIYEGRIVGIV 485

Length = 501

>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional

 Score = 86.3 bits (214), Expect = 1e-19
 Identities = 69/238 (28%), Positives = 116/238 (48%), Gaps = 35/238 (14%)

Query: 84  NISFHYPS------RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 137
            +S HY             +LN+V L++++ E VA++G SG GKST   LL+ L  PS G
Sbjct: 8   GLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQG 67

Query: 138 QIYIDGFPLTDLD---IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNE------D 188
            +   G PL  L+    +  R  I  V Q+  +  ++ +  +     +++  E       
Sbjct: 68  NVSWRGEPLAKLNRAQRKAFRRDIQMVFQDS-ISAVNPRKTV-----REIIREPLRHLLS 121

Query: 189 IEWAAKQAYVHEFILSLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLD 242
           ++ A + A   E + ++      L D  L      LSGGQ QR+ +ARA+  +P +L+LD
Sbjct: 122 LDKAERLARASEMLRAV-----DLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILD 176

Query: 243 EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIE 299
           EA S LD   +  V  +L  L+   +     + I H L  + +   R++V+D+G+I+E
Sbjct: 177 EAVSNLDLVLQAGVIRLLKKLQQ--QFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232

Length = 268

>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional

 Score = 86.3 bits (214), Expect = 1e-19
 Identities = 70/218 (32%), Positives = 112/218 (51%), Gaps = 26/218 (11%)

Query: 84  NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 143
            +S  Y  R    +LN + L I A + VA+VG SG GKST + LL  L  PS G++    
Sbjct: 17  AVSKRYGERT---VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGT 73

Query: 144 FPLTDLDIRWLREKIGFVGQEPQLLQMD-IKSNIMYGCPKDVKNEDIEWAAKQAYVHEFI 202
            PL +      RE    + Q+ +LL    +  N+  G     ++     AA QA      
Sbjct: 74  APLAEA-----REDTRLMFQDARLLPWKKVIDNVGLGLKGQWRD-----AALQALA---- 119

Query: 203 LSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL 260
                G     ++    LSGGQKQR+A+ARA++  P +LLLDE   ALD+ +   ++ ++
Sbjct: 120 ---AVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLI 176

Query: 261 HALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRI 297
            +L    +   TV+++ H +S   A+ DR+++I++G+I
Sbjct: 177 ESLWQ--QHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212

Length = 257

>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 85.6 bits (213), Expect = 1e-19
 Identities = 60/229 (26%), Positives = 110/229 (48%), Gaps = 25/229 (10%)

Query: 95  VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RW 153
           +  L  V L +E  E+VA++G +G+GK+T +  ++ L  P  G+I  DG  +T L     
Sbjct: 16  IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHER 75

Query: 154 LREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHE-F-----ILSLP 206
            R  I +V +  ++  ++ ++ N++ G     + +          V+E F       +  
Sbjct: 76  ARLGIAYVPEGRRIFPRLTVEENLLLGA--YARRDKEAQERDLEEVYELFPRLKERRNQR 133

Query: 207 CGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALR-- 264
            G         LSGG++Q +AIARA++  P +LLLDE +  L   +   V+ +  A++  
Sbjct: 134 AGT--------LSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIFEAIKEL 182

Query: 265 NDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHKGRL 312
              +   T++++         + DR  V+++GRI+  G  AELL    +
Sbjct: 183 RK-EGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPDV 230

Length = 237

>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional

 Score = 87.4 bits (217), Expect = 2e-19
 Identities = 68/206 (33%), Positives = 108/206 (52%), Gaps = 4/206 (1%)

Query: 97  ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 156
           +LN + L I + ++VA++G SGSGK+T + ++  L   + G I   G  ++ L  R    
Sbjct: 17  VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHAR--DR 74

Query: 157 KIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD 215
           K+GFV Q   L + M +  NI +G     + E    AA +A V + +  +   +      
Sbjct: 75  KVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP 134

Query: 216 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIV 275
             LSGGQKQR+A+ARA+  +P ILLLDE   ALD++    ++  L  L  + K   +V V
Sbjct: 135 AQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFT-SVFV 193

Query: 276 IAHRLSTIKAVDRIVVIDDGRIIEVG 301
              +   ++  DR+VV+  G I + G
Sbjct: 194 THDQEEAMEVADRVVVMSQGNIEQAG 219

Length = 353

>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 85.3 bits (211), Expect = 3e-19
 Identities = 74/244 (30%), Positives = 120/244 (49%), Gaps = 40/244 (16%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFV---NLLLRLYEPS- 135
           ++ VN+  +Y S     ++  V L I  N V A++G SG GKST +   N LL L E + 
Sbjct: 5   IETVNLRVYYGSNH---VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEAR 61

Query: 136 -DGQIYIDGFPL--TDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGC-------PKDV 184
            +G++ + G  +   D+D   +R ++G V Q P     + I  N+  G         K  
Sbjct: 62  VEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKE 121

Query: 185 KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAI 238
            +E +EWA K+A + +            V D L      LSGGQ+QR+ IARA+   P I
Sbjct: 122 LDERVEWALKKAALWD-----------EVKDRLNDYPSNLSGGQRQRLVIARALAMKPKI 170

Query: 239 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRI 297
           LL+DE T+ +D      ++ +L  L+ +     T++++ H  +    V D +  +  G++
Sbjct: 171 LLMDEPTANIDPVGTAKIEELLFELKKE----YTIVLVTHSPAQAARVSDYVAFLYLGKL 226

Query: 298 IEVG 301
           IEVG
Sbjct: 227 IEVG 230

Length = 253

>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 85.3 bits (211), Expect = 3e-19
 Identities = 68/220 (30%), Positives = 107/220 (48%), Gaps = 27/220 (12%)

Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-----GQIYIDGFPLTD--LD 150
           L  + ++I  N V A++G SG GKST +    R+ +        G I  +G  + D   D
Sbjct: 22  LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81

Query: 151 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-----KDVKNED--IEWAAKQAYVHEFIL 203
           +  LR KIG V Q P      I  N+ YG P     K+ K  D  +E + K A + + + 
Sbjct: 82  VVALRRKIGMVFQRPNPFPKSIYENVAYG-PRIHGEKNKKTLDTIVEKSLKGAALWDEV- 139

Query: 204 SLPCGYETLVDDDL-LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHA 262
                 + L D  L LSGGQ+QR+ IAR +  +P ++L+DE  SALD  +   ++ ++  
Sbjct: 140 -----KDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIED 194

Query: 263 LRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 301
           L+ +     TVI++ H +     V D    +  G++IE  
Sbjct: 195 LKKE----YTVIIVTHNMQQAARVSDYTGFMYLGKLIEFD 230

Length = 253

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 87.6 bits (217), Expect = 3e-19
 Identities = 67/237 (28%), Positives = 113/237 (47%), Gaps = 12/237 (5%)

Query: 95  VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS--DGQIYIDGFPLTDLDIR 152
           V  L+ + L +   E V + G +G+GKST + +L  +Y     DG+IY  G PL   +IR
Sbjct: 14  VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIR 73

Query: 153 WLREK-IGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFI--LSLPCG 208
                 I  + QE  L+ ++ +  NI  G    +    + + A        +  L L   
Sbjct: 74  DTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDAD 133

Query: 209 YETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCK 268
             T    D   GGQ+Q + IA+A+ +   +L+LDE +S+L +E E   + +L  +R+   
Sbjct: 134 NVTRPVGD-YGGGQQQLVEIAKALNKQARLLILDEPSSSL-TEKE--TEILLDIIRDLKA 189

Query: 269 TKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTESL 324
                + I+H+L+ +KAV D I VI DG+ +        + +  +   +V R+  SL
Sbjct: 190 HGVACVYISHKLNEVKAVCDTICVIRDGQHVAT-KDMSTMSEDDIITMMVGREITSL 245

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional

 Score = 86.4 bits (215), Expect = 3e-19
 Identities = 78/258 (30%), Positives = 117/258 (45%), Gaps = 58/258 (22%)

Query: 77  MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR----LY 132
           M  ++   +   Y  +    ++  + L +   E + +VG SG GKST    LLR    L 
Sbjct: 1   MAGLKLQAVRKSYDGK--TQVIKGIDLDVADGEFIVLVGPSGCGKST----LLRMVAGLE 54

Query: 133 EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYG-----CPKDVKN 186
             + G+I+I G  + +L+    R+ I  V Q   L   M ++ N+ YG      PK    
Sbjct: 55  RITSGEIWIGGRVVNELEPA-DRD-IAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIE 112

Query: 187 EDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEA 244
           E +  AA+       IL L    E L+D     LSGGQ+QR+A+ RAI+R+PA+ L DE 
Sbjct: 113 ERVAEAAR-------ILEL----EPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEP 161

Query: 245 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHR-LST---------IKAV---DRIVV 291
            S LD+            LR      R  I   HR L T         ++A+   DR+VV
Sbjct: 162 LSNLDA-----------KLRV---QMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVV 207

Query: 292 IDDGRIIEVGNHAELLHK 309
           ++ G   ++G   E+  K
Sbjct: 208 MNGGVAEQIGTPVEVYEK 225

Length = 356

>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional

 Score = 84.7 bits (210), Expect = 4e-19
 Identities = 57/226 (25%), Positives = 104/226 (46%), Gaps = 29/226 (12%)

Query: 96  PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 155
            ILN + L++   ++ A++G +G GKST +    RL  P  G +++   P++ L  R L 
Sbjct: 16  RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLA 75

Query: 156 EKIGFVGQEPQLLQMDIKSN--IMYG-----------CPKDVKNEDIEWAAKQAYVHEFI 202
            ++  + Q   L    I     + YG             +D  N  +  A +Q  ++   
Sbjct: 76  RRLALLPQHH-LTPEGITVRELVAYGRSPWLSLWGRLSAED--NARVNQAMEQTRINHLA 132

Query: 203 LSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHA 262
                  +  + D  LSGGQ+QR  +A  + +D  ++LLDE T+ LD   +  +  ++  
Sbjct: 133 -------DRRLTD--LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRE 183

Query: 263 LRNDCKTKRTVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGNHAELL 307
           L    K   TV+ + H L+   +  D +VV+ +G ++  G   E++
Sbjct: 184 LNTQGK---TVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM 226

Length = 255

>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 84.8 bits (210), Expect = 5e-19
 Identities = 71/238 (29%), Positives = 123/238 (51%), Gaps = 24/238 (10%)

Query: 77  MGHVQFVNISFHYPSRPTV--PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP 134
           MG +   N+S+ Y +        L  V LTIE     A +G +GSGKST + LL  L+ P
Sbjct: 1   MG-INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP 59

Query: 135 SDGQIYIDGFPLT----DLDIRWLREKIGFVGQ--EPQLLQMDIKSNIMYGCPKD--VKN 186
           + G + +D   +T    + DI+ +R+K+G V Q  E QL +  +  ++ +G P++  V  
Sbjct: 60  TQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFG-PQNFGVSQ 118

Query: 187 EDIEWAAKQAYVHEFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEA 244
           E+ E  A++       L+L    E+L + +   LSGGQ +R+AIA  +  +P IL+LDE 
Sbjct: 119 EEAEALAREK------LALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEP 172

Query: 245 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVG 301
           T+ LD +    +  +   L        T++++ H +  +    D + V++ G+++  G
Sbjct: 173 TAGLDPKGRKELMTLFKKLHQS---GMTIVLVTHLMDDVANYADFVYVLEKGKLVLSG 227

Length = 280

>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed

 Score = 86.4 bits (214), Expect = 6e-19
 Identities = 61/233 (26%), Positives = 106/233 (45%), Gaps = 19/233 (8%)

Query: 91  SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 150
                 +L+ V L++    +V +VG +G+GK+T +  +     P+ G + + G  +  L 
Sbjct: 12  EFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALS 71

Query: 151 IRWLREKIGFVGQEPQL-LQMDIKSNIMYG-CPK----DVKNEDIEWAAKQAYVHEFILS 204
            R    ++  V Q+  L  + D++  +  G  P     D   E    A ++A        
Sbjct: 72  ARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMER----- 126

Query: 205 LPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHA 262
              G     D  +  LSGG++QR+ +ARA+ +   +LLLDE T++LD    H V+  L  
Sbjct: 127 --TGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLD--INHQVR-TLEL 181

Query: 263 LRNDCKTKRTVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYA 314
           +R      +T +   H L    +  D +V++ DGR+   G  A++L    L A
Sbjct: 182 VRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTADTLRA 234

Length = 402

>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional

 Score = 84.5 bits (209), Expect = 6e-19
 Identities = 75/236 (31%), Positives = 114/236 (48%), Gaps = 27/236 (11%)

Query: 84  NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 143
           N+SF  P R    +L+ + LT  A +V  ++G +GSGKST + +L R   PS+G+I +D 
Sbjct: 16  NVSFRVPGRT---LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDA 72

Query: 144 FPLTDLDIRWLREKIGFVGQE-PQLLQMDIKSNIMYGCPKDVKNEDIEW--------AAK 194
            PL     +    K+ ++ Q+ P    M ++  +  G           W        AA 
Sbjct: 73  QPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIG--------RYPWHGALGRFGAAD 124

Query: 195 QAYVHEFI--LSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 252
           +  V E I  + L      LVD   LSGG++QR  IA  + +D   LLLDE TSALD   
Sbjct: 125 REKVEEAISLVGLKPLAHRLVDS--LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAH 182

Query: 253 EHYVKGVLHALRNDCKTKRTVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGNHAELL 307
           +  V  ++H L    +   TVI + H ++   +  D +V +  G +I  G  AEL+
Sbjct: 183 QVDVLALVHRLSQ--ERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236

Length = 265

>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL

 Score = 83.2 bits (206), Expect = 8e-19
 Identities = 57/198 (28%), Positives = 95/198 (47%), Gaps = 27/198 (13%)

Query: 96  PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID-GFPLTDL----- 149
           P+L +V LT+ A E VA+ G SG+GKST +  L   Y P  G+I +       DL     
Sbjct: 22  PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81

Query: 150 -DIRWLREK-IGFVGQ----EPQLLQMDI--KSNIMYGCPKDVKNEDIEWAAKQAYVHEF 201
            ++  +R K IG+V Q     P++  +++  +  +  G P++           +  + E 
Sbjct: 82  REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPER 141

Query: 202 ILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLH 261
           +  LP            SGG++QR+ IAR  + D  ILLLDE T++LD+ +   V  ++ 
Sbjct: 142 LWHLP--------PATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELI- 192

Query: 262 ALRNDCKTKRTVIV-IAH 278
               + K +   ++ I H
Sbjct: 193 ---AEAKARGAALIGIFH 207

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224

>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

 Score = 86.6 bits (215), Expect = 8e-19
 Identities = 66/275 (24%), Positives = 109/275 (39%), Gaps = 32/275 (11%)

Query: 27  CEWLIY-----ATWRMV-DNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHV 80
             W I      A WR     L+   Q++ A +      D     +              +
Sbjct: 339 LSWFIDNYDAIADWRATLLRLAEFRQALEAAQM-----DTEKPARTGRRIDFDDNADHGI 393

Query: 81  QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY 140
              N+S   P   T  +L+ +   +   E + I G SG+GK++ +  L  L+    G+I 
Sbjct: 394 TLENLSLRTPDGQT--LLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRI- 450

Query: 141 IDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMY-GCPKDVKNEDIEWAAKQAYVH 199
               P            + F+ Q P L Q  ++  + Y     D  + ++     +  + 
Sbjct: 451 --SMPAD--------SALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLG 500

Query: 200 EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV 259
           +    L    E    D +LSGG++QR+A AR +L  P  + LDEATSALD E+E     +
Sbjct: 501 DLAERLD---EEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDR---L 554

Query: 260 LHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 294
              L+ +     TVI + HR +      R + + D
Sbjct: 555 YQLLKEELPDA-TVISVGHRPTLWNFHSRQLELLD 588

Length = 604

>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 84.3 bits (209), Expect = 9e-19
 Identities = 66/224 (29%), Positives = 113/224 (50%), Gaps = 20/224 (8%)

Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT----DLDIRW 153
           L  V ++I +   VAI+G +GSGKST +  L  L +P+ G + I    +T    +  ++ 
Sbjct: 23  LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82

Query: 154 LREKIGFVGQ--EPQLLQMDIKSNIMYGCPKD--VKNEDIEWAAKQAYVHEFILSLPCGY 209
           LR+K+G V Q  E QL +  ++ +I +G P +  V  ED +  A++      ++ LP   
Sbjct: 83  LRKKVGIVFQFPEHQLFEETVEKDICFG-PMNFGVSEEDAKQKAREMI---ELVGLP--- 135

Query: 210 ETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 267
           E L+      LSGGQ +R+AIA  +  +P +L+LDE T+ LD +    +  + + L    
Sbjct: 136 EELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHK-- 193

Query: 268 KTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 310
           +   T +++ H +       D+IVV+  G +   G   E+    
Sbjct: 194 EKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADP 237

Length = 290

>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional

 Score = 84.9 bits (210), Expect = 1e-18
 Identities = 68/231 (29%), Positives = 116/231 (50%), Gaps = 15/231 (6%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           +    +S  Y  +  V   N +  T+ + E   ++G +G+GKST   ++L +  P  G+I
Sbjct: 42  IDLAGVSKSYGDKAVV---NGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI 98

Query: 140 YIDGFPLTDLDIRWLREKIGFVGQEPQL-LQMDIKSN-IMYGCPKDVKNEDIEWAAKQAY 197
            + G P+     R  R +IG V Q   L L+  ++ N +++G    +   +IE  A    
Sbjct: 99  TVLGVPVPA-RARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIE--AVIPS 155

Query: 198 VHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 257
           + EF   L    +  V D  LSGG K+R+ +ARA++ DP +L+LDE T+ LD  + H + 
Sbjct: 156 LLEFA-RLESKADARVSD--LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIW 212

Query: 258 GVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 307
             L +L    K   T+++  H +   + + DR+ V++ GR I  G    L+
Sbjct: 213 ERLRSLLARGK---TILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALI 260

Length = 340

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 86.0 bits (213), Expect = 1e-18
 Identities = 58/217 (26%), Positives = 111/217 (51%), Gaps = 21/217 (9%)

Query: 91  SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 150
           S   V  L  V LT+   E+ A++G +G+GKST + +L  ++EP+ G I I+      LD
Sbjct: 14  SFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLD 73

Query: 151 IRWLRE-KIGFVGQEPQLL-QMDIKSNIMYG-------CPKDVKNEDIEWAA--KQAYVH 199
            +   +  IG + QE  ++ ++ +  N+  G       C  ++    I+W     +A + 
Sbjct: 74  HKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNI----IDWREMRVRAAMM 129

Query: 200 EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV 259
              + L    +  V +  LS   KQ + IA+ ++ D  ++++DE TS+L ++   Y+  +
Sbjct: 130 LLRVGLKVDLDEKVAN--LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLI 187

Query: 260 LHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDG 295
           ++ LR +      ++ I+H+L+ I+ + DR  V+ DG
Sbjct: 188 MNQLRKEGT---AIVYISHKLAEIRRICDRYTVMKDG 221

Length = 510

>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional

 Score = 86.4 bits (214), Expect = 2e-18
 Identities = 67/240 (27%), Positives = 119/240 (49%), Gaps = 28/240 (11%)

Query: 89  YPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD 148
           +   P V +L  V +++   ++  ++G +GSGKST +  LL  +E S+G++         
Sbjct: 668 FELEPKV-LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV--------- 717

Query: 149 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCG 208
               W    I +V Q+  ++   ++ NI++   +D     +  A + + +   +  L  G
Sbjct: 718 ----WAERSIAYVPQQAWIMNATVRGNILFFDEEDA--ARLADAVRVSQLEADLAQLGGG 771

Query: 209 YETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSE-SEHYVKGV-LHALR 264
            ET + +    LSGGQK R+++ARA+  +  + LLD+  SALD+   E  V+   L AL 
Sbjct: 772 LETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALA 831

Query: 265 NDCKTKRTVIVIA-HRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTES 323
              KT+    V+A H++  +   D +V + DGR+   G+ A+ +    LYA L     E+
Sbjct: 832 --GKTR----VLATHQVHVVPRADYVVALGDGRVEFSGSSADFMRTS-LYATLAAELKEN 884

Length = 1560

>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional

 Score = 83.4 bits (206), Expect = 2e-18
 Identities = 65/203 (32%), Positives = 99/203 (48%), Gaps = 36/203 (17%)

Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--PS---DGQIYIDGFPLTD--LD 150
           L ++ L I  NEV AI+G SG GKST++  L R+ E  PS    G+I      + D    
Sbjct: 40  LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99

Query: 151 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-------KDVKNEDIEWAAKQAYVHEFIL 203
           +  LR  +G V Q+P      I  N+ YG P       K   +E +E + + A + +   
Sbjct: 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYG-PKIHGIKDKKTLDEIVEKSLRGAAIWD--- 155

Query: 204 SLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 257
                    + D L      LSGGQ+QR+ IAR +  +P ++L+DE TSALD  S   V+
Sbjct: 156 --------ELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVE 207

Query: 258 GVLHALRNDCKTKRTVIVIAHRL 280
            ++  L    K   ++I++ H +
Sbjct: 208 ELVQEL----KKDYSIIIVTHNM 226

Length = 271

>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

 Score = 82.6 bits (205), Expect = 2e-18
 Identities = 67/238 (28%), Positives = 110/238 (46%), Gaps = 29/238 (12%)

Query: 88  HYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFP 145
           H        IL  V LT++  EV AI+G +GSGKST    ++    YE ++G+I  DG  
Sbjct: 10  HVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGED 69

Query: 146 LTDLDI--RWLREKIGFVGQEP---------QLLQMDIKSNIMYGCPKDVKNEDIEWAAK 194
           + +L    R  R  I    Q P           L+  + +            ++++  A+
Sbjct: 70  ILELSPDER-ARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAE 128

Query: 195 QAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 254
              + E  L           ++  SGG+K+R  I + +L +P + +LDE  S LD ++  
Sbjct: 129 LLGLDEEFLERYV-------NEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALK 181

Query: 255 YVKGVLHALRNDCKTKRTVIVIAHR---LSTIKAVDRIVVIDDGRIIEVGNHAELLHK 309
            V   ++ALR +    R V++I H    L  IK  D++ V+ DGRI++ G+  EL  +
Sbjct: 182 IVAEGINALREE---GRGVLIITHYQRLLDYIKP-DKVHVLYDGRIVKSGD-PELAEE 234

Length = 251

>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 83.4 bits (206), Expect = 2e-18
 Identities = 80/252 (31%), Positives = 120/252 (47%), Gaps = 44/252 (17%)

Query: 79  HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--PS- 135
           HV   N S +Y     V  +N     I +  V AI+G SG GKSTF+  + R+ +  PS 
Sbjct: 39  HVVAKNFSIYYGEFEAVKKVN---ADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSC 95

Query: 136 --DGQIYIDG----FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-----DV 184
              G +  DG       TD  +  LR+KIG V Q+P      I  NI YG P+     D 
Sbjct: 96  HTTGALMFDGEDIYGKFTDEVL--LRKKIGMVFQKPNPFPKSIFDNIAYG-PRLHGINDK 152

Query: 185 K--NEDIEWAAKQAYVHEFILSLPCGYETLVDDDL------LSGGQKQRIAIARAILRDP 236
           K   E +E + ++A + +            V D L      LSGGQ+QR+ +AR +  +P
Sbjct: 153 KQLEEIVEKSLRKAALWD-----------EVSDRLDKNALGLSGGQQQRLCVARTLAVEP 201

Query: 237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDG 295
            ILLLDE TSALD ++   ++ ++  LR       T++++ H +     V D  +   +G
Sbjct: 202 EILLLDEPTSALDPKATAKIEDLIQELRG----SYTIMIVTHNMQQASRVSDYTMFFYEG 257

Query: 296 RIIEVGNHAELL 307
            ++E    A+L 
Sbjct: 258 VLVEHAPTAQLF 269

Length = 286

>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 82.9 bits (205), Expect = 2e-18
 Identities = 62/230 (26%), Positives = 115/230 (50%), Gaps = 28/230 (12%)

Query: 92  RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI 151
           R TV  +  V  T+   + +AI+G +GSGKST   +L  + EP+ G+I I+  PL   D 
Sbjct: 23  RQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDY 82

Query: 152 RWLREKIGFVGQEP-----------QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHE 200
            +  ++I  + Q+P           Q+L   ++ N      +  + + I    +   +  
Sbjct: 83  SFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQ--RRKQIFETLRMVGL-- 138

Query: 201 FILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL 260
               LP          +L+ GQKQR+A+ARA++  P I++ DEA ++LD      ++  L
Sbjct: 139 ----LP--DHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMS----MRSQL 188

Query: 261 HALRNDCKTKRTV--IVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 307
             L  + + K+ +  I +   +  IK + D+++V+ +G ++E G+ A++L
Sbjct: 189 INLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVL 238

Length = 267

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 85.1 bits (211), Expect = 2e-18
 Identities = 68/219 (31%), Positives = 116/219 (52%), Gaps = 25/219 (11%)

Query: 97  ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-- 154
           ++ ++  T+   E + +VG SGSGKST    LLRL   S G+I+ DG PL +L+ R L  
Sbjct: 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLLP 359

Query: 155 -REKIGFVGQEPQLL---QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE 210
            R +I  V Q+P      ++++   I  G    V    +  A ++  V   +       E
Sbjct: 360 VRHRIQVVFQDPNSSLNPRLNVLQIIEEGL--RVHQPTLSAAQREQQVIAVM------EE 411

Query: 211 TLVDDDL-------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 263
             +D +         SGGQ+QRIAIARA++  P++++LDE TS+LD   +  +  +L +L
Sbjct: 412 VGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSL 471

Query: 264 RNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 301
           +   K +   + I+H L  ++A+  +++V+  G ++E G
Sbjct: 472 QQ--KHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQG 508

Length = 529

>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein

 Score = 82.6 bits (204), Expect = 2e-18
 Identities = 62/228 (27%), Positives = 104/228 (45%), Gaps = 9/228 (3%)

Query: 91  SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 150
           S     I++ V +T     +  ++G +GSGKST + LL     P  G + + G  L  L 
Sbjct: 10  SAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLS 69

Query: 151 IRWLREKIGFVGQE-PQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGY 209
            R    ++  V Q+    + + ++  +  G          +     A V   +       
Sbjct: 70  RRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALART--EL 127

Query: 210 ETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 267
             L D D+  LSGG++QR+ +ARA+ ++P +LLLDE T+ LD  ++      L  +R   
Sbjct: 128 SHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQL---ETLALVRELA 184

Query: 268 KTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHKGRLYA 314
            T  TV+   H L+   +  D +VV+D GR++  G   E+L    + A
Sbjct: 185 ATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLTPALIRA 232

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256

>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C

 Score = 83.0 bits (205), Expect = 3e-18
 Identities = 66/227 (29%), Positives = 110/227 (48%), Gaps = 24/227 (10%)

Query: 84  NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 143
           N+ F        P+L ++ L IE  E++AI G +GSGK++ + L+L   EPS+G+I   G
Sbjct: 39  NLFFSNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG 98

Query: 144 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFIL 203
                        +I F  Q   ++   IK NI++G   D      +   K   + E I 
Sbjct: 99  -------------RISFSSQFSWIMPGTIKENIIFGVSYD--EYRYKSVVKACQLEEDIT 143

Query: 204 SLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALD--SESEHYVKGV 259
             P    T++ +    LSGGQ+ RI++ARA+ +D  + LLD     LD  +E E +   V
Sbjct: 144 KFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCV 203

Query: 260 LHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAEL 306
              + N     +T I++  ++  +K  D+I+++ +G     G  +EL
Sbjct: 204 CKLMAN-----KTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 245

The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282

>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

 Score = 84.9 bits (210), Expect = 3e-18
 Identities = 76/302 (25%), Positives = 133/302 (44%), Gaps = 36/302 (11%)

Query: 8   MSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQL-----IDLLP 62
           +++ +G  S       VL   +L       V  L +LL +  A  K+ +L         P
Sbjct: 253 LALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFP 312

Query: 63  SNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKS 122
             Q   +   L+         N+ F Y        +  + LTI+  E+V ++G +GSGKS
Sbjct: 313 RPQAFPDWKTLE-------LRNVRFAYQ--DNAFHVGPINLTIKRGELVFLIGGNGSGKS 363

Query: 123 TFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE----PQLLQMDIKSNIMY 178
           T   LL  LY+P  G+I +DG P++   +   R+    V  +     QLL  + K++   
Sbjct: 364 TLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKAS--- 420

Query: 179 GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 238
             P+ ++    +W  +    H+   SL  G  + +    LS GQK+R+A+  A+L +  I
Sbjct: 421 --PQLIE----KWLQRLELAHK--TSLNDGRFSNLK---LSTGQKKRLALLLALLEERDI 469

Query: 239 LLLDEATSALDSESEHYVKGVLHALRNDCKTK-RTVIVIAHRLSTIKAVDRIVVIDDGRI 297
           L+LDE  +  D     + +     L    K + +T+  I+H        DR++ + +G++
Sbjct: 470 LVLDEWAADQDP---AFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQL 526

Query: 298 IE 299
            E
Sbjct: 527 SE 528

Length = 546

>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 81.6 bits (201), Expect = 6e-18
 Identities = 68/240 (28%), Positives = 110/240 (45%), Gaps = 40/240 (16%)

Query: 84  NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 143
            ++F+Y        L ++ + +   +V A++G SG GKSTF+    R+++   G  Y   
Sbjct: 21  KLNFYYGGYQA---LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGE 77

Query: 144 FPL---------TDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP------KDVKNED 188
             L          ++D   +R +I  V Q+P      I  N+ YG        + +  E 
Sbjct: 78  IILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEER 137

Query: 189 IEWAAKQAYVHEFILSLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLD 242
           +E A + A + +            V D L      LSGGQ+QR+ IARA+  DP ILL D
Sbjct: 138 VENALRNAALWD-----------EVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFD 186

Query: 243 EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 301
           E TSALD  +   ++ ++  L+N    K T++++ H +     V D    +  G +IE G
Sbjct: 187 EPTSALDPIATASIEELISDLKN----KVTILIVTHNMQQAARVSDYTAYMYMGELIEFG 242

Length = 265

>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE

 Score = 80.6 bits (200), Expect = 6e-18
 Identities = 58/218 (26%), Positives = 101/218 (46%), Gaps = 21/218 (9%)

Query: 97  ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-R 155
           IL  V L +   EV  ++G +G GK+T +  L+ L     G I +DG  +T L      R
Sbjct: 15  ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74

Query: 156 EKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 214
             I +V Q  ++  ++ ++ N++ G              +   + + I  L   +  L +
Sbjct: 75  AGIAYVPQGREIFPRLTVEENLLTGLAA--------LPRRSRKIPDEIYEL---FPVLKE 123

Query: 215 -----DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKT 269
                   LSGGQ+Q++AIARA++  P +LLLDE T  +       +  V+  LR +   
Sbjct: 124 MLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAE--G 181

Query: 270 KRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAEL 306
              ++++   L   + + DR  V++ GR++  G   EL
Sbjct: 182 GMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230

>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein

 Score = 83.9 bits (208), Expect = 7e-18
 Identities = 58/223 (26%), Positives = 111/223 (49%), Gaps = 31/223 (13%)

Query: 97  ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLDIRW 153
           +L +V    +  E++A++G SG+GK+T +N L           G + ++G P+   D + 
Sbjct: 40  LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPI---DAKE 96

Query: 154 LREKIGFVGQEPQLL-QMDIKSNIMYGC----PKDVKNEDIEWAAKQAYVHEFILSL--- 205
           +R    +V Q+   +  + ++ ++M+      P+ V  ++     K+  V E + +L   
Sbjct: 97  MRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKE-----KRERVDEVLQALGLR 151

Query: 206 PC-----GYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL 260
            C     G    V    LSGG+++R+A A  +L DP +L  DE TS LDS   +    V+
Sbjct: 152 KCANTRIGVPGRVKG--LSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYS---VV 206

Query: 261 HALRNDCKTKRTVIVIAHRLST--IKAVDRIVVIDDGRIIEVG 301
             L+   +  +T+I   H+ S+   +  D+I+++ +GR+  +G
Sbjct: 207 QVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLG 249

[Transport and binding proteins, Other]. Length = 617

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 83.4 bits (207), Expect = 8e-18
 Identities = 68/255 (26%), Positives = 117/255 (45%), Gaps = 26/255 (10%)

Query: 77  MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 136
             ++ F  I   +P    V  L+ +     A +V A++G +G+GKST + +L   Y+P  
Sbjct: 2   SPYLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDA 58

Query: 137 GQIYIDGFPLTDLDIR-WLREKIGFVGQEPQLL-QMDIKSNIMYG-CPKDV----KNEDI 189
           G I IDG  +        L   +  + QE  L+ +M +  N+  G  P       +    
Sbjct: 59  GSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLN 118

Query: 190 EWAAKQ-AYVHEFI-LSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSA 247
             A +Q  ++   I    P  Y        LS GQ+Q + IA+A+ R+  ++  DE TS+
Sbjct: 119 YEAREQLEHLGVDIDPDTPLKY--------LSIGQRQMVEIAKALARNARVIAFDEPTSS 170

Query: 248 LDS-ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAE 305
           L + E E   + V+  LR +    R ++ ++HR+  I A+ D I V  DGR +   +   
Sbjct: 171 LSAREIEQLFR-VIRELRAE---GRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMA 226

Query: 306 LLHKGRLYAKLVKRQ 320
            + + +L   +V R+
Sbjct: 227 QVDRDQLVQAMVGRE 241

Length = 501

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score = 84.2 bits (208), Expect = 8e-18
 Identities = 63/233 (27%), Positives = 113/233 (48%), Gaps = 37/233 (15%)

Query: 82  FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 141
           F N S +       P+L ++   +E  +++A+ G +GSGKS+ + +++   EPS+G+I  
Sbjct: 431 FSNFSLY-----VTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKH 485

Query: 142 DGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEW----AAKQAY 197
            G             +I F  Q   ++   IK NI++G   D      E+      K   
Sbjct: 486 SG-------------RISFSPQTSWIMPGTIKDNIIFGLSYD------EYRYTSVIKACQ 526

Query: 198 VHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALD--SESE 253
           + E I   P   +T++ +    LSGGQ+ RI++ARA+ +D  + LLD   + LD  +E E
Sbjct: 527 LEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKE 586

Query: 254 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAEL 306
            +   +   + N     +T I++  +L  +K  D+I+++ +G     G  +EL
Sbjct: 587 IFESCLCKLMSN-----KTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSEL 634

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional

 Score = 82.1 bits (203), Expect = 9e-18
 Identities = 68/235 (28%), Positives = 108/235 (45%), Gaps = 46/235 (19%)

Query: 99  NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK- 157
           + V L +   E + +VG SG GKSTF   ++ L + +DG++   G  L  +     R   
Sbjct: 38  DGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVR 97

Query: 158 --IGFVGQEPQLLQMDIKSNI---------MYGCPK----DVKNEDIEWAAK-------- 194
             I  + Q+P L  ++ +  I          Y  PK    +VK+       K        
Sbjct: 98  SDIQMIFQDP-LASLNPRMTIGEIIAEPLRTYH-PKLSRQEVKDRVKAMMLKVGLLPNLI 155

Query: 195 QAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 254
             Y HEF                 SGGQ QRI IARA++ +P +++ DE  SALD   + 
Sbjct: 156 NRYPHEF-----------------SGGQCQRIGIARALILEPKLIICDEPVSALDVSIQA 198

Query: 255 YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLH 308
            V  +L  L+ +     ++I IAH L+ +K + DR++V+  G  +E+G + E+ H
Sbjct: 199 QVVNLLQQLQREMGL--SLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYH 251

Length = 331

>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional

 Score = 82.6 bits (204), Expect = 1e-17
 Identities = 62/221 (28%), Positives = 104/221 (47%), Gaps = 26/221 (11%)

Query: 96  PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 155
             ++ V LTI   E+ A++G SG GKST + +L    +P+ GQI +DG  L+ +     +
Sbjct: 33  HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQ 90

Query: 156 EKIGFVGQEPQLL-QMDIKSNIMYGC-----PKDVKNEDIEWAAKQAYVHEFILSLPCGY 209
             I  + Q   L   M ++ NI +G      PK      +       ++ EF    P   
Sbjct: 91  RPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP--- 147

Query: 210 ETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE----SEHYVKGVLHALRN 265
                   LSGGQ+QR+A+AR++ + P +LLLDE   ALD +     +  V  +L  +  
Sbjct: 148 ------HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGV 201

Query: 266 DCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAEL 306
            C     V+V   +   +    RI +++ G+ +++G   E+
Sbjct: 202 TC-----VMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEI 237

Length = 377

>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional

 Score = 82.1 bits (203), Expect = 1e-17
 Identities = 70/210 (33%), Positives = 114/210 (54%), Gaps = 18/210 (8%)

Query: 103 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG 162
           LTI+   +V ++G SG GK+T + L+  L +P++GQI+IDG  +T   I+  +  I  V 
Sbjct: 27  LTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDICMVF 84

Query: 163 QEPQLL-QMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLP--CGYET-LVDDDL 217
           Q   L   M +  N+ YG     V  E+ +   K+A      L L    G+E   VD   
Sbjct: 85  QSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEA------LELVDLAGFEDRYVDQ-- 136

Query: 218 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIA 277
           +SGGQ+QR+A+ARA++  P +LL DE  S LD+     ++  +  L+   +   T + + 
Sbjct: 137 ISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQ--QFNITSLYVT 194

Query: 278 HRLSTIKAV-DRIVVIDDGRIIEVGNHAEL 306
           H  S   AV D ++V++ G+I+++G+  EL
Sbjct: 195 HDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224

Length = 351

>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional

 Score = 80.5 bits (199), Expect = 1e-17
 Identities = 59/208 (28%), Positives = 97/208 (46%), Gaps = 33/208 (15%)

Query: 81  QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY 140
           Q  ++   Y  +P    L  + LT+E+ E++ ++G SG GK+T +NL+        G I 
Sbjct: 3   QISHLYADYGGKP---ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSIT 59

Query: 141 IDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVKNEDIEWAAKQA-- 196
           +DG P+         E+ G V Q   LL   +++ N+ +G     V+       A Q   
Sbjct: 60  LDGKPVEGPGA----ER-GVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLK 114

Query: 197 ------YVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 250
                     +I  L             SGGQ+QR+ IARA+  +P +LLLDE   ALD+
Sbjct: 115 KVGLEGAEKRYIWQL-------------SGGQRQRVGIARALAANPQLLLLDEPFGALDA 161

Query: 251 ESEHYVKGVLHALRNDCKTKRTVIVIAH 278
            +   ++ +L  L+   +T + V++I H
Sbjct: 162 FTREQMQTLL--LKLWQETGKQVLLITH 187

Length = 255

>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD

 Score = 80.1 bits (198), Expect = 1e-17
 Identities = 69/217 (31%), Positives = 103/217 (47%), Gaps = 27/217 (12%)

Query: 100 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP----SDGQIYIDGFPLTDLDIRWLR 155
            + L+++  EV+A+VG SGSGKS     +L L  P    + G+I +DG PL  L IR   
Sbjct: 4   DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGR- 62

Query: 156 EKIGFVGQEPQ-----LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFI-LSLPCGY 209
             I  + Q P+     L  M   ++ +       K       A+   +     + LP   
Sbjct: 63  -HIATIMQNPRTAFNPLFTM--GNHAIETLRSLGKLSK---QARALILEALEAVGLPDPE 116

Query: 210 ETLVDDDL----LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRN 265
           E L         LSGG  QR+ IA A+L +P  L+ DE T+ LD  ++  V  +L  LR 
Sbjct: 117 EVL---KKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ 173

Query: 266 DCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVG 301
              T   +++I H L  + +  D + V+DDGRI+E G
Sbjct: 174 LFGT--GILLITHDLGVVARIADEVAVMDDGRIVERG 208

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230

>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 80.2 bits (198), Expect = 2e-17
 Identities = 70/246 (28%), Positives = 113/246 (45%), Gaps = 43/246 (17%)

Query: 84  NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--PS---DGQ 138
           N++  Y +   V    +V   I   +V A++G SG GKST +  L R+ +        G+
Sbjct: 18  NVTISYGTFEAV---KNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGR 74

Query: 139 IYIDGFPLTD--LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP----KDVKNEDIEWA 192
           +  DG  L D  +D   +R +IG V Q+P      I  NI +G          +E +E +
Sbjct: 75  VLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERS 134

Query: 193 AKQAYVHEFILSLPC-------GYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEAT 245
            ++A V +      C       GY        LSGGQ+QR+ IAR I  +P ++L+DE  
Sbjct: 135 LRKAAVWD-----ECKDKLNESGYS-------LSGGQQQRLCIARTIAIEPEVILMDEPC 182

Query: 246 SALDSESEHYVKGVLHALRNDCKTKRTVIVIAH------RLSTIKAVDRIVVIDDGRIIE 299
           SALD  S   ++  +H L+ +     T++++ H      R+S + A      ++ G   +
Sbjct: 183 SALDPISTLKIEETMHELKKNF----TIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGK 238

Query: 300 VGNHAE 305
           VG   E
Sbjct: 239 VGYLVE 244

Length = 269

>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI

 Score = 80.4 bits (198), Expect = 3e-17
 Identities = 62/208 (29%), Positives = 104/208 (50%), Gaps = 12/208 (5%)

Query: 97  ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 156
           ++N +  TI   E   ++G +G+GKST   +LL +  P  G+I + G P+     R  R 
Sbjct: 19  VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPS-RARLARV 77

Query: 157 KIGFVGQEPQL-LQMDIKSNIM-YGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 214
            IG V Q   L  +  ++ N++ +G    +   +IE       + EF   L    +  V 
Sbjct: 78  AIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPS--LLEFA-RLESKADVRVA 134

Query: 215 DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 274
              LSGG K+R+ +ARA++ DP +L+LDE T+ LD  + H +   L +L       +T++
Sbjct: 135 L--LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSL---LARGKTIL 189

Query: 275 VIAHRLSTI-KAVDRIVVIDDGRIIEVG 301
           +  H +    +  DR+ V++ GR I  G
Sbjct: 190 LTTHFMEEAERLCDRLCVLESGRKIAEG 217

This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303

>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 79.3 bits (195), Expect = 3e-17
 Identities = 73/264 (27%), Positives = 120/264 (45%), Gaps = 45/264 (17%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--PS-- 135
           V+   ++ H+     V     V +    N V AI+G SG GKST +  + R+++  PS  
Sbjct: 5   VKLEQLNVHFGKNHAV---KDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSAR 61

Query: 136 -DGQIYIDGFPLTD--LDIRWLREKIGFVGQEPQLL-QMDIKSNIMYG------CPKDVK 185
             G+I +D   + D  +D   +R ++G V Q+P     M I  N++ G        +   
Sbjct: 62  VTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEA 121

Query: 186 NEDIEWAAKQAYVHEFILSLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAIL 239
           +E +E + K+  + +            V D L      LSGGQ+QR+ IAR I   P ++
Sbjct: 122 DEIVESSLKRVALWD-----------EVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVI 170

Query: 240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRII 298
           L+DE  SALD  S   ++ ++  L    K K T+I++ H +     V D       G ++
Sbjct: 171 LMDEPASALDPISTLKIEELIEEL----KEKYTIIIVTHNMQQAARVSDYTAFFYMGDLV 226

Query: 299 EVGNHAELLHKGRLYAKLVKRQTE 322
           E G         +++    K+QTE
Sbjct: 227 ECG------ETKKIFTTPEKKQTE 244

Length = 252

>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor

 Score = 79.0 bits (195), Expect = 4e-17
 Identities = 51/193 (26%), Positives = 93/193 (48%), Gaps = 26/193 (13%)

Query: 104 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQ 163
           +I  +EV+ I+G +G GK+TF+ +L  + +P +G            DI    + + +   
Sbjct: 21  SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEG------------DIEIELDTVSY--- 65

Query: 164 EPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL--LSGG 221
           +PQ ++ D +  +     +D+ +   +      Y    I   P   E ++D ++  LSGG
Sbjct: 66  KPQYIKADYEGTV-----RDLLSSITKDFYTHPYFKTEIAK-PLQIEQILDREVPELSGG 119

Query: 222 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS 281
           + QR+AIA  + +D  I LLDE ++ LD E       V+   R     ++T  V+ H + 
Sbjct: 120 ELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIR--RFAENNEKTAFVVEHDII 177

Query: 282 TIKAV-DRIVVID 293
            I  + DR++V +
Sbjct: 178 MIDYLADRLIVFE 190

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 81.0 bits (201), Expect = 6e-17
 Identities = 54/210 (25%), Positives = 102/210 (48%), Gaps = 15/210 (7%)

Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR-WLRE 156
           +  V  T+ A E++ I GL G+G++     L      S G+I +DG P+     R  ++ 
Sbjct: 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKA 334

Query: 157 KIGFVGQEPQ----LLQMDIKSNI-MYGCPKDVKNEDIEWAAKQAYVHEFILSL---PCG 208
            I +V ++ +    +L M I  NI +    +  +   I+   ++A    +I  L      
Sbjct: 335 GIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPS 394

Query: 209 YETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCK 268
            E  +    LSGG +Q++ +AR +  DP +L+LDE T  +D  ++  +  ++  L     
Sbjct: 395 PEQPIG--TLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIREL---AA 449

Query: 269 TKRTVIVIAHRLSTIKAV-DRIVVIDDGRI 297
             + +++I+  L  +  + DRI+V+ +GRI
Sbjct: 450 EGKAILMISSELPELLGLSDRILVMREGRI 479

Length = 500

>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]

 Score = 78.0 bits (193), Expect = 8e-17
 Identities = 59/223 (26%), Positives = 122/223 (54%), Gaps = 24/223 (10%)

Query: 96  PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWL 154
            ++N V L + + E+V ++G +G+GK+T   +++ L  P  G+I +D   +T L + +  
Sbjct: 18  KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRA 77

Query: 155 REKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQ----AYVHEFILSLPCGY 209
           R  IG++ QE  +  ++ ++ NIM     +++ +D++ A ++    A + EF +      
Sbjct: 78  RLGIGYLPQEASIFRKLTVEDNIM--AVLEIREKDLKKAERKEELDALLEEFHI------ 129

Query: 210 ETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 267
             L D     LSGG+++R+ IARA+  +P  +LLDE  + +D  +   ++ ++  L++  
Sbjct: 130 THLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD-- 187

Query: 268 KTKRTV-IVIA-HRL-STIKAVDRIVVIDDGRIIEVGNHAELL 307
              R + ++I  H +  T+   DR  +I DG+++  G+  E++
Sbjct: 188 ---RGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIV 227

Length = 243

>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

 Score = 77.3 bits (191), Expect = 8e-17
 Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 19/164 (11%)

Query: 96  PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 155
            + + +  T+ A E + I G +G+GK+T + +L  L  P  G++Y  G P+ +       
Sbjct: 16  TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQN-VRESYH 74

Query: 156 EKIGFVGQEPQL-LQMDIKSNI-----MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGY 209
           + + ++G +P +  ++    N+      +G      N    W A        +  LP G 
Sbjct: 75  QALLYLGHQPGIKTELTALENLHFWQRFHGS----GNAATIWEALAQVGLAGLEDLPVGQ 130

Query: 210 ETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 253
                   LS GQ++R+A+AR  L    + +LDE  +ALD E  
Sbjct: 131 --------LSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGV 166

Length = 209

>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 78.2 bits (192), Expect = 8e-17
 Identities = 64/236 (27%), Positives = 112/236 (47%), Gaps = 37/236 (15%)

Query: 97  ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD-------- 148
           +L ++ +     ++ AI+G SG GKST +  L R+ +   G   ++G  L D        
Sbjct: 19  VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGA-RLEGAVLLDNENIYSPN 77

Query: 149 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYG------CPKDVKNEDIEWAAKQAYVHEFI 202
           LD+  LR+++G V Q+P      I  N+ +G        +   +E +E + +QA + +  
Sbjct: 78  LDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWD-- 135

Query: 203 LSLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 256
                     V D+L      LSGGQ+QR+ IAR +  +P ++L+DE  SALD  S   +
Sbjct: 136 ---------EVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRI 186

Query: 257 KGVLHALRNDCKTKRTVIVIAHRL-STIKAVDRIVVIDDGRIIEVGNHAELLHKGR 311
           + ++  L    K   T+ ++ H +    +A D    +  G ++E G   E+  + R
Sbjct: 187 EELMQEL----KQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSRPR 238

Length = 251

>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 77.2 bits (190), Expect = 1e-16
 Identities = 46/157 (29%), Positives = 75/157 (47%), Gaps = 11/157 (7%)

Query: 97  ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLDIRW 153
           +L +V  TI   E+V ++G SG GKST ++ ++          G+++++   L  L    
Sbjct: 17  LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA- 75

Query: 154 LREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETL 212
            + +IG + Q+  L   + +  N+++  P  +K      AA  A     +          
Sbjct: 76  -QRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQ---- 130

Query: 213 VDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 249
            D   LSGGQ+ R+A+ RA+L  P  LLLDE  S LD
Sbjct: 131 -DPATLSGGQRARVALLRALLAQPKALLLDEPFSRLD 166

Length = 213

>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 77.1 bits (190), Expect = 1e-16
 Identities = 69/231 (29%), Positives = 110/231 (47%), Gaps = 34/231 (14%)

Query: 79  HVQFVNISF--HYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 136
           +V  V+ +F  H      +P+L +V L++ A E V + G SGSGKST +  L   Y P +
Sbjct: 6   NVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDE 65

Query: 137 GQIYID----------GFPLTDLDIRWLREKIGFVGQ----EPQLLQMDIKSN--IMYGC 180
           GQI +             P   L++R  R  IG+V Q     P++  +D+ +   +  G 
Sbjct: 66  GQILVRHEGEWVDLVTAEPREVLEVR--RTTIGYVSQFLRVIPRVSALDVVAEPLLARGV 123

Query: 181 PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILL 240
           P++V          +  + E + SL             SGG++QR+ IAR  + D  ILL
Sbjct: 124 PREVARAKAADLLTRLNLPERLWSLAPA--------TFSGGEQQRVNIARGFIVDYPILL 175

Query: 241 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIV-IAHRLSTIKAV-DRI 289
           LDE T++LD+ +    + V+  L  + K +   +V I H     +AV DR+
Sbjct: 176 LDEPTASLDATN----RAVVVELIREAKARGAALVGIFHDEEVREAVADRL 222

Length = 235

>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D

 Score = 75.7 bits (187), Expect = 2e-16
 Identities = 58/199 (29%), Positives = 86/199 (43%), Gaps = 51/199 (25%)

Query: 96  PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 155
            +L  +   I+  + + I G SG+GKS+    L  L+    G+I +              
Sbjct: 15  VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPE-----------G 63

Query: 156 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD 215
           E + F+ Q P L    ++  ++Y  P         W                       D
Sbjct: 64  EDLLFLPQRPYLPLGTLREQLIY--P---------W-----------------------D 89

Query: 216 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIV 275
           D+LSGG++QR+A AR +L  P  + LDEATSALD ESE  +  +L  L        TVI 
Sbjct: 90  DVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL------GITVIS 143

Query: 276 IAHRLSTIKAVDRIVVIDD 294
           + HR S  K  DR++ +D 
Sbjct: 144 VGHRPSLWKFHDRVLDLDG 162

Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166

>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional

 Score = 76.8 bits (189), Expect = 2e-16
 Identities = 63/207 (30%), Positives = 107/207 (51%), Gaps = 13/207 (6%)

Query: 97  ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL------D 150
           +L++V  +I   E++AIVG SGSGKST ++LL  L  P+ G +  +G P++ L      +
Sbjct: 24  VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83

Query: 151 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE 210
           +R   +K+GF+ Q   LL  D  +      P  +  +       +A   E + ++   + 
Sbjct: 84  LR--NQKLGFIYQFHHLLP-DFTALENVAMPLLIGKKKPAEINSRA--LEMLAAVGLEHR 138

Query: 211 TLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTK 270
                  LSGG++QR+AIARA++ +P ++L DE T  LD+ +   +  +L  L     T 
Sbjct: 139 ANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGT- 197

Query: 271 RTVIVIAHRLSTIKAVDRIVVIDDGRI 297
              +V+ H L   K + R + + DGR+
Sbjct: 198 -AFLVVTHDLQLAKRMSRQLEMRDGRL 223

Length = 233

>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 77.0 bits (189), Expect = 2e-16
 Identities = 67/247 (27%), Positives = 116/247 (46%), Gaps = 35/247 (14%)

Query: 84  NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-----DGQ 138
           +++ +Y  +  V  +N   L ++   V A++G SG GK+TF+  + R+++ +      G+
Sbjct: 9   DVNIYYGDKQAVKNVN---LDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGR 65

Query: 139 IYIDGFPLTD--LDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCP----------KDVK 185
           I +DG  +    +D   +R ++G V Q+P     M +  N++ G             +V 
Sbjct: 66  ILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVA 125

Query: 186 NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEAT 245
              +  AA    V + + +   G         LSGGQ+QR+ IARA+  +P ILL+DE T
Sbjct: 126 ERSLRGAALWDEVKDRLKTPATG---------LSGGQQQRLCIARALAVEPEILLMDEPT 176

Query: 246 SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHA 304
           SALD  S   ++ ++     D K   T+I++ H +     V D       G ++E G   
Sbjct: 177 SALDPASTARIEDLM----TDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTD 232

Query: 305 ELLHKGR 311
           +L    R
Sbjct: 233 QLFTNPR 239

Length = 252

>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 77.0 bits (190), Expect = 3e-16
 Identities = 60/234 (25%), Positives = 98/234 (41%), Gaps = 43/234 (18%)

Query: 97  ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 156
           +L+ V L +   EV+AI+G +G+GKST +  L     P  G++ ++G PL       L  
Sbjct: 16  LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75

Query: 157 KIGFVGQEPQL---------LQMDIKSNIMYGCPKDVKNEDIEWAAK-------QAYVHE 200
               + Q   L         +QM     I +   ++   ED   AA+             
Sbjct: 76  HRAVLPQNSSLAFPFTVQEVVQM---GRIPHRSGRE-PEEDERIAAQALAATDLSGLAGR 131

Query: 201 FILSLPCGYETLVDDDLLSGGQKQRIAIAR------AILRDPAILLLDEATSALDSESEH 254
              +L             SGG++QR+ +AR        +     L LDE TSALD   +H
Sbjct: 132 DYRTL-------------SGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQH 178

Query: 255 YVKGVLHALRNDCKTKRTVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGNHAELL 307
           +   +   L    +    V+ + H L+   +  DRIV++  GR+I  G+  ++L
Sbjct: 179 HTLRLARQL---AREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVL 229

Length = 259

>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 77.4 bits (191), Expect = 4e-16
 Identities = 56/227 (24%), Positives = 103/227 (45%), Gaps = 14/227 (6%)

Query: 86  SFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 145
            F +    ++  +  +   I   E+V  +G +G+GKST + +L  L  P+ G++ ++G  
Sbjct: 28  HFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKD 87

Query: 146 LTDLDIRWLREKIGFV-GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILS 204
                  +LR  IG V GQ+ QL   D+ +       K +   +I        +      
Sbjct: 88  PFRRREEYLR-SIGLVMGQKLQLW-WDLPALDSLEVLKLIY--EIPDDEFAERLDFLTEI 143

Query: 205 LPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHA 262
           L    E  +   +  LS GQ+ R  +A A+L  P +L LDE T  LD  ++     +   
Sbjct: 144 L--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQ---ANIREF 198

Query: 263 LRNDCKTKRTVIVIA-HRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 307
           L+   + ++  +++  H    I  + DR+++ID G+++  G  A+L 
Sbjct: 199 LKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQ 245

Length = 325

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 78.1 bits (193), Expect = 5e-16
 Identities = 68/255 (26%), Positives = 113/255 (44%), Gaps = 51/255 (20%)

Query: 65  QFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTF 124
           +F   G +L +L+  ++F N+S  Y       +L  +   I+  + +AIVG +G+GKST 
Sbjct: 309 RFPPPGKRLGKLV--LEFENVSKGYD--GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTL 364

Query: 125 VNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE--KIGFVGQEPQLLQMD--IKSNIMYGC 180
           + LL     P  G +              + E  KIG+  Q    L  D  +   +  G 
Sbjct: 365 LKLLAGELGPLSGTV-------------KVGETVKIGYFDQHRDELDPDKTVLEELSEGF 411

Query: 181 PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL------LSGGQKQRIAIARAILR 234
           P      + E    +AY+  F  +          +D       LSGG+K R+ +A+ +L+
Sbjct: 412 PDGD---EQEV---RAYLGRFGFT---------GEDQEKPVGVLSGGEKARLLLAKLLLQ 456

Query: 235 DPAILLLDEATSALDSESEHYVKGVL-HALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVI 292
            P +LLLDE T+ LD ES       L  AL +    + TV++++H    +  V  RI ++
Sbjct: 457 PPNLLLLDEPTNHLDIES----LEALEEALLD---FEGTVLLVSHDRYFLDRVATRIWLV 509

Query: 293 DDGRIIEVGNHAELL 307
           +D      G + + L
Sbjct: 510 EDKVEEFEGGYEDYL 524

Length = 530

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 78.2 bits (193), Expect = 5e-16
 Identities = 62/216 (28%), Positives = 102/216 (47%), Gaps = 16/216 (7%)

Query: 95  VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL 154
           V +L  +  T+ A EV A++G +G+GKST + ++  +  P  G + I G P   L     
Sbjct: 24  VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPA-K 82

Query: 155 REKIG--FVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET 211
             ++G   V QEP L   + +K NI++G PK          A    + + + +L C  + 
Sbjct: 83  AHQLGIYLVPQEPLLFPNLSVKENILFGLPKR--------QASMQKMKQLLAALGCQLDL 134

Query: 212 LVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 271
                 L    +Q + I R ++RD  IL+LDE T++L       +   +  L        
Sbjct: 135 DSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA---QGV 191

Query: 272 TVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAEL 306
            ++ I+H+L  I+ + DRI V+ DG I   G  A+L
Sbjct: 192 GIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227

Length = 510

>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 75.8 bits (187), Expect = 5e-16
 Identities = 63/243 (25%), Positives = 120/243 (49%), Gaps = 33/243 (13%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           +   N+S  Y ++    +L+ V L I    + +I+G +G+GKST ++++ RL +   G+I
Sbjct: 2   ITIENVSKSYGTKV---VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI 58

Query: 140 YIDGFPLTDLDIRWLREKIGFVGQEPQL-LQMDIKSNIMYG-CP----------KDVKNE 187
            IDG  LT    + L +K+  + QE  +  ++ ++  + +G  P          + + NE
Sbjct: 59  TIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINE 118

Query: 188 DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSA 247
            IE+   +     ++             D LSGGQ+QR  IA  + +D   +LLDE  + 
Sbjct: 119 AIEYLHLEDLSDRYL-------------DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNN 165

Query: 248 LDSESEHYVKGVLHALRNDCKT-KRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAE 305
           LD   +H V  ++  LR       +T++V+ H ++      D IV + +G++++ G+  E
Sbjct: 166 LD--MKHSV-QIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDE 222

Query: 306 LLH 308
           ++ 
Sbjct: 223 IIQ 225

Length = 252

>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional

 Score = 75.2 bits (185), Expect = 6e-16
 Identities = 64/208 (30%), Positives = 104/208 (50%), Gaps = 11/208 (5%)

Query: 97  ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW--- 153
           IL  V L ++  E +A++G SGSGKST + +L  L + S G++ + G PL  +D      
Sbjct: 25  ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84

Query: 154 LREK-IGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET 211
           LR K +GFV Q   L+  ++   N+    P  ++ E    +   A     +  L  G   
Sbjct: 85  LRAKHVGFVFQSFMLIPTLNALENVEL--PALLRGESSRQSRNGAK--ALLEQLGLGKRL 140

Query: 212 LVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 271
                 LSGG++QR+A+ARA    P +L  DE T  LD ++   +  +L +L  +  T  
Sbjct: 141 DHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGT-- 198

Query: 272 TVIVIAHRLSTIKAVDRIVVIDDGRIIE 299
           T+I++ H L      DR + + +G++ E
Sbjct: 199 TLILVTHDLQLAARCDRRLRLVNGQLQE 226

Length = 228

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 77.9 bits (192), Expect = 7e-16
 Identities = 63/261 (24%), Positives = 115/261 (44%), Gaps = 38/261 (14%)

Query: 97  ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLL--LRLYEPSDGQI-----------YID- 142
           +L ++  TIE  EV+ I+G SG+GKS  +++L  +  YEP+ G+I           Y++ 
Sbjct: 15  VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVER 74

Query: 143 ----GFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI---------MYGCPKDVKN--- 186
               G P          E++ F     +L +  I+  I         +YG    + N   
Sbjct: 75  PSKVGEPCPVCGGTLEPEEVDFWNLSDKLRR-RIRKRIAIMLQRTFALYGDDTVLDNVLE 133

Query: 187 --EDIEWAAKQAY--VHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLD 242
             E+I +  K+A     + I  +   +        LSGG+KQR+ +AR + ++P + L D
Sbjct: 134 ALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLAD 193

Query: 243 EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVG 301
           E T  LD ++   V   L        +  ++++ +H    I    D+ + +++G I E G
Sbjct: 194 EPTGTLDPQTAKLVHNALEEAVKA--SGISMVLTSHWPEVIEDLSDKAIWLENGEIKEEG 251

Query: 302 NHAELLHKGRLYAKLVKRQTE 322
              E++         V+++ E
Sbjct: 252 TPDEVVAVFMEGVSEVEKECE 272

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 77.5 bits (191), Expect = 7e-16
 Identities = 62/246 (25%), Positives = 127/246 (51%), Gaps = 27/246 (10%)

Query: 80  VQFVNISFHYPS--RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 137
           ++  N+S  Y S  R  V  +++V L ++  E+  IVG SG+GK+T   ++  + EP+ G
Sbjct: 280 IKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSG 339

Query: 138 QIYI----DGFPLTDL--DIRWLREK-IGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDI 189
           ++ +    +   +T    D R   ++ IG + QE  L     +  N+      ++ +E  
Sbjct: 340 EVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDE-- 397

Query: 190 EWAAKQAYVHEFILSLPCGY-----ETLVDD--DLLSGGQKQRIAIARAILRDPAILLLD 242
              A+   V    +    G+     E ++D   D LS G++ R+A+A+ ++++P I++LD
Sbjct: 398 --LARMKAVITLKMV---GFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILD 452

Query: 243 EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 301
           E T  +D  ++  V   +   R +   ++T I+++H +  +  V DR  ++ DG+I+++G
Sbjct: 453 EPTGTMDPITKVDVTHSILKAREE--MEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIG 510

Query: 302 NHAELL 307
           +  E++
Sbjct: 511 DPEEIV 516

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional

 Score = 75.3 bits (185), Expect = 7e-16
 Identities = 64/216 (29%), Positives = 101/216 (46%), Gaps = 19/216 (8%)

Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL---DIRWL 154
           L  V   +   E+  + G SG+GKST + L+  +  PS G+I+  G  +T L   ++ +L
Sbjct: 18  LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77

Query: 155 REKIGFVGQEPQLLQMD--IKSNI-MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET 211
           R +IG + Q+  LL MD  +  N+ +         +DI      A     +L     +  
Sbjct: 78  RRQIGMIFQDHHLL-MDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPI 136

Query: 212 LVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE-SEHYVKGVLHALRNDCKTK 270
                 LSGG++QR+ IARA++  PA+LL DE T  LD   SE    G+L       +  
Sbjct: 137 Q-----LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSE----GILRLFEEFNRVG 187

Query: 271 RTVIVIAHRLSTIKAVD-RIVVIDDGRIIEVGNHAE 305
            TV++  H +  I     R++ + DG +   G   E
Sbjct: 188 VTVLMATHDIGLISRRSYRMLTLSDGHLHG-GVGGE 222

Length = 222

>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D

 Score = 75.2 bits (185), Expect = 7e-16
 Identities = 64/202 (31%), Positives = 102/202 (50%), Gaps = 15/202 (7%)

Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 157
           L  V LTI+  E ++++G SG GKST +NL+  L +P+ G + ++G  +T+     +   
Sbjct: 1   LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRM--- 57

Query: 158 IGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD 216
              V Q   LL  + ++ NI      D    D+  + ++A V E I  +           
Sbjct: 58  --VVFQNYSLLPWLTVRENIALAV--DRVLPDLSKSERRAIVEEHIALVGLTEAADKRPG 113

Query: 217 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLH-ALRNDCKTKR-TVI 274
            LSGG KQR+AIARA+   P +LLLDE   ALD+      +G L   L    +  R TV+
Sbjct: 114 QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDA----LTRGNLQEELMQIWEEHRVTVL 169

Query: 275 VIAHRL-STIKAVDRIVVIDDG 295
           ++ H +   +   DR+V++ +G
Sbjct: 170 MVTHDVDEALLLSDRVVMLTNG 191

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230

>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional

 Score = 77.7 bits (192), Expect = 8e-16
 Identities = 61/225 (27%), Positives = 99/225 (44%), Gaps = 27/225 (12%)

Query: 82  FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 141
             N++F Y        +  + LTI+  E++ ++G +GSGKST   LL  LY+P  G+I +
Sbjct: 325 LRNVTFAYQDNGFS--VGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILL 382

Query: 142 DGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIE-WAAKQAYVHE 200
           DG P+T       R+    V  +  L        ++    K      +E W  +    H+
Sbjct: 383 DGKPVTAEQPEDYRKLFSAVFTDFHLFD-----QLLGPEGKPANPALVEKWLERLKMAHK 437

Query: 201 FILSLPCGYETLVDDDL----LSGGQKQRIAIARAILRDPAILLLDEATSALDSE--SEH 254
                      L D  +    LS GQK+R+A+  A+  +  ILLLDE  +  D     E 
Sbjct: 438 L---------ELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREF 488

Query: 255 YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIE 299
           Y   +L  L+   K   T+  I+H        DR++ + +G++ E
Sbjct: 489 YQV-LLPLLQEMGK---TIFAISHDDHYFIHADRLLEMRNGQLSE 529

Length = 547

>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 75.9 bits (186), Expect = 9e-16
 Identities = 61/246 (24%), Positives = 126/246 (51%), Gaps = 29/246 (11%)

Query: 80  VQFVNISFHY-PSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 137
           ++F  +++ Y P+ P     L  + L ++     A++G +GSGKST +  L  L +P++G
Sbjct: 2   IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61

Query: 138 QIYIDGFPLTDL----DIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCPKD--VKNEDI 189
           ++ +    ++      +I+ +R+K+G V Q P  QL +  +  ++ +G P++  +  E  
Sbjct: 62  KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFG-PQNFGIPKEKA 120

Query: 190 EWAAKQ-----AYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEA 244
           E  A +         EF    P  +E       LSGGQ +R+AIA  +  +P +L+LDE 
Sbjct: 121 EKIAAEKLEMVGLADEFWEKSP--FE-------LSGGQMRRVAIAGILAMEPEVLVLDEP 171

Query: 245 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNH 303
           T+ LD ++   +  +  ++    ++ +TV+++ H +  +    D + +++ G II  G  
Sbjct: 172 TAGLDPKARIEMMQLFESIH---QSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTP 228

Query: 304 AELLHK 309
           +++  +
Sbjct: 229 SDVFQE 234

Length = 288

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score = 77.6 bits (191), Expect = 1e-15
 Identities = 70/293 (23%), Positives = 137/293 (46%), Gaps = 30/293 (10%)

Query: 40   NLSSLLQSIGATEKVFQLIDL--------------LPSNQFLSEGVKLQRLM---GHVQF 82
            ++  L++S+    +VF+ IDL                S   + E    Q+     G +  
Sbjct: 1164 DVDGLMRSV---SRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDV 1220

Query: 83   VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 142
              ++  Y       +L  +  ++E  + V ++G +GSGKST ++ LLRL   ++G+I ID
Sbjct: 1221 QGLTAKYTEAGRA-VLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQID 1278

Query: 143  GFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFI 202
            G     + ++  R+  G + Q+  +     + N+     +   +E+I   A++  +   I
Sbjct: 1279 GVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNL--DPYEQWSDEEIWKVAEEVGLKSVI 1336

Query: 203  LSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL 260
               P   + ++ D   +LS G KQ + +AR+IL    ILLLDE ++ LD  +   ++  L
Sbjct: 1337 EQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTL 1396

Query: 261  HALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLY 313
                ++C    TVI+  HR+  +    + +VI+   + +  +  +LL++  L+
Sbjct: 1397 KQSFSNC----TVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLF 1445

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein

 Score = 76.7 bits (189), Expect = 1e-15
 Identities = 68/234 (29%), Positives = 112/234 (47%), Gaps = 46/234 (19%)

Query: 99  NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI-DGFPLTDL------DI 151
           ++  L IE  E+  ++GLSGSGKST +  +  L   S G + + DG    D+       +
Sbjct: 41  HNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATL 100

Query: 152 RWLR-EKIGFVGQEPQLLQ-MDIKSNI-----MYGCPKDVKNEDI----------EWAAK 194
           R LR  ++  V Q+  LL    ++ N+     M G PK  + + +          +WA +
Sbjct: 101 RRLRTHRVSMVFQQFALLPWRTVEENVAFGLEMQGMPKAERRKRVDEQLELVGLAQWADR 160

Query: 195 QAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 254
                E                 LSGG +QR+ +ARA   +  ILL+DE  SALD     
Sbjct: 161 --KPGE-----------------LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRT 201

Query: 255 YVKGVLHALRNDCKTKRTVIVIAHRL-STIKAVDRIVVIDDGRIIEVGNHAELL 307
            ++  L  L++  K K+T++ ++H L   +K  +RI +++ GRII+ G   E++
Sbjct: 202 QLQDELLELQS--KLKKTIVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIV 253

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 77.2 bits (190), Expect = 1e-15
 Identities = 62/216 (28%), Positives = 99/216 (45%), Gaps = 43/216 (19%)

Query: 109 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF---PLTDLDIRWLREKIGFVGQEP 165
           E +++VG SGSGKST    LLRL E   G+I  +G     L+   ++ LR  I F+ Q+P
Sbjct: 351 ETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDP 410

Query: 166 QLLQMDIKSNIMYGC----------PKDVKNEDIEWAAKQA---------YVHEFILSLP 206
               +D +  +              P       + W  ++          Y HEF     
Sbjct: 411 -YASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEF----- 464

Query: 207 CGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 266
                       SGGQ+QRI IARA+  +P +++ DEA SALD      +  +L  L+ D
Sbjct: 465 ------------SGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRD 512

Query: 267 CKTKRTVIVIAHRLSTIKAVD-RIVVIDDGRIIEVG 301
                  + I+H ++ ++ +  R+ V+  G+I+E+G
Sbjct: 513 FGI--AYLFISHDMAVVERISHRVAVMYLGQIVEIG 546

Length = 623

>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA

 Score = 74.8 bits (184), Expect = 3e-15
 Identities = 52/216 (24%), Positives = 103/216 (47%), Gaps = 21/216 (9%)

Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 157
           L+ V    +   +V  +G +G+GKST + ++     P  G + + G  +       ++  
Sbjct: 18  LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKE-VQRN 76

Query: 158 IGFVGQE-PQLLQMDIKSNI-----MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET 211
           IG++ +  P  L M ++  +     +YG    +  + +E         E I  +    E 
Sbjct: 77  IGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVE---------EMIELVGLRPEQ 127

Query: 212 LVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 271
                 LS G +QR+ +A+A++ DP +L+LDE T+ LD      ++ V+  +  D    +
Sbjct: 128 HKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKD----K 183

Query: 272 TVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAEL 306
           T+I+  H +  ++A+ DR+++I+ G+I+      EL
Sbjct: 184 TIILSTHIMQEVEAICDRVIIINKGKIVADKKLDEL 219

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301

>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

 Score = 73.6 bits (181), Expect = 3e-15
 Identities = 60/218 (27%), Positives = 104/218 (47%), Gaps = 45/218 (20%)

Query: 97  ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 156
            +N++ LT+  N V  ++G +G+GKST + ++  +  P+ G+I  DG P T  D+     
Sbjct: 15  AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLH---- 70

Query: 157 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD 216
           KIG + + P L +     N+               A +   VH  +L LP   ++ +D+ 
Sbjct: 71  KIGSLIESPPLYE-----NLT--------------ARENLKVHTTLLGLP---DSRIDEV 108

Query: 217 L---------------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLH 261
           L                S G KQR+ IA A+L  P +L+LDE T+ LD      ++ ++ 
Sbjct: 109 LNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIR 168

Query: 262 ALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRII 298
           +     +   TVI+ +H LS ++ + D I +I +G + 
Sbjct: 169 SFP---EQGITVILSSHILSEVQQLADHIGIISEGVLG 203

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223

>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 73.5 bits (180), Expect = 4e-15
 Identities = 65/233 (27%), Positives = 106/233 (45%), Gaps = 41/233 (17%)

Query: 105 IEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPL--TDLDIRWLREK 157
           I  NE+   +G SG GKST +  L R+ +       +G ++  G  +    +D   +R  
Sbjct: 31  IRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRY 90

Query: 158 IGFVGQEPQLLQMDIKSNIMYGCP----KDVKNEDIEWAAKQAYVHEFILSLPCGYETLV 213
           IG V Q+P    M I  N+ +G      K    + ++ A + A + +            V
Sbjct: 91  IGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWD-----------EV 139

Query: 214 DDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 267
            D L      LSGGQ+QR+ IARAI  +P +LLLDE  SALD  +   V+ ++  L+ D 
Sbjct: 140 KDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKD- 198

Query: 268 KTKRTVIVIAH------RLSTIKAVDRIVVIDDGR---IIEVGNHAELLHKGR 311
               T+ ++ H      R++   A   + +    R   ++E+G  A++    R
Sbjct: 199 ---YTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQNPR 248

Length = 261

>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional

 Score = 75.3 bits (185), Expect = 5e-15
 Identities = 66/247 (26%), Positives = 126/247 (51%), Gaps = 26/247 (10%)

Query: 68  SEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNL 127
           ++G  ++R++GH     IS          ILN V       E++A++G SGSGKST +N 
Sbjct: 56  NKGSNIKRILGHKP--KISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNA 113

Query: 128 LL-RLYEPS-DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGC---- 180
           L  R+   +  G I  +    T   ++    + GFV Q+  L   + ++  +++ C    
Sbjct: 114 LAGRIQGNNFTGTILANNRKPTKQILK----RTGFVTQDDILYPHLTVRETLVF-CSLLR 168

Query: 181 -PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLL---SGGQKQRIAIARAILRDP 236
            PK +  ++    A ++ + E  L+  C   T++ +  +   SGG+++R++IA  +L +P
Sbjct: 169 LPKSLTKQEKILVA-ESVISELGLT-KCE-NTIIGNSFIRGISGGERKRVSIAHEMLINP 225

Query: 237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST--IKAVDRIVVIDD 294
           ++L+LDE TS LD+ + + +   L +L    K   T++   H+ S+   +  D ++V+ +
Sbjct: 226 SLLILDEPTSGLDATAAYRLVLTLGSLAQKGK---TIVTSMHQPSSRVYQMFDSVLVLSE 282

Query: 295 GRIIEVG 301
           GR +  G
Sbjct: 283 GRCLFFG 289

Length = 659

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 75.0 bits (185), Expect = 6e-15
 Identities = 58/194 (29%), Positives = 91/194 (46%), Gaps = 34/194 (17%)

Query: 104 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG--FV 161
            I   EV+ I+G +G GK+TFV LL  + +P +G          DL + +  + I   + 
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSE-------EDLKVSYKPQYISPDYD 415

Query: 162 GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFI--LSLPCGYETLVDDDLLS 219
           G    LL+  I+S                      +  E +  L+L    E  VD+  LS
Sbjct: 416 GTVEDLLRSAIRSAFG----------------SSYFKTEIVKPLNLEDLLERPVDE--LS 457

Query: 220 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV-KGVLHALRNDCKTKRTVIVIAH 278
           GG+ QR+AIA A+ R+  + LLDE ++ LD E    V K +   + N    ++T +V+ H
Sbjct: 458 GGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIEN---NEKTALVVDH 514

Query: 279 RLSTIKAV-DRIVV 291
            +  I  V DR++V
Sbjct: 515 DIYMIDYVSDRLIV 528

Length = 591

>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 73.1 bits (179), Expect = 7e-15
 Identities = 62/198 (31%), Positives = 93/198 (46%), Gaps = 34/198 (17%)

Query: 101 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTDLDIRW-- 153
           V L I A +++A +G SG GKST +    R+ +       +G++      + D  I    
Sbjct: 39  VHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVK 98

Query: 154 LREKIGFVGQEPQLLQMDIKSNIMYGCP-----KDVKNEDIEWAAKQAYVHEFILSLPCG 208
           LR ++G V Q P      I  NI +  P     K   +E +E + ++A + E        
Sbjct: 99  LRRQVGMVFQRPNPFPKSIYENIAFA-PRANGYKGNLDELVEDSLRRAAIWE-------- 149

Query: 209 YETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHA 262
               V D L      LSGGQ+QR+ IARAI   P +LL+DE  SALD  S   V+ +   
Sbjct: 150 ---EVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLE 206

Query: 263 LRNDCKTKRTVIVIAHRL 280
           L    K + T+I++ H +
Sbjct: 207 L----KEQYTIIMVTHNM 220

Length = 274

>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 71.9 bits (177), Expect = 1e-14
 Identities = 61/233 (26%), Positives = 106/233 (45%), Gaps = 38/233 (16%)

Query: 99  NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL--------- 149
           N+V L +   E+V+++G +G+GK+T  N L   Y+P+ G I + G  +  L         
Sbjct: 22  NNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81

Query: 150 ------DIRWLREKIG----FVGQEPQLLQMDIKSNIMYGCPK-----DVKNEDIEWAAK 194
                  +R  RE        V Q  QL     K+ +  G  K       ++E ++ AA 
Sbjct: 82  VVRTFQHVRLFREMTVIENLLVAQHQQL-----KTGLFSGLLKTPAFRRAESEALDRAA- 135

Query: 195 QAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 254
                E +  L        +   L+ GQ++R+ IAR ++  P IL+LDE  + L+ +   
Sbjct: 136 --TWLERVGLLEHANRQAGN---LAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETK 190

Query: 255 YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAEL 306
            +  ++  LRN+     TV++I H +  +  + DRI V++ G  +  G   E+
Sbjct: 191 ELDELIAELRNEHNV--TVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEI 241

Length = 255

>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit

 Score = 71.0 bits (174), Expect = 2e-14
 Identities = 52/217 (23%), Positives = 95/217 (43%), Gaps = 29/217 (13%)

Query: 103 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG 162
           L+ +  E++ ++G +G+GK+T +  +L L  P+ G + + G              IG+V 
Sbjct: 1   LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASP-----GKGWRHIGYVP 55

Query: 163 QEPQL---LQMDIKSNIMYGC---------PKDVKNEDIEWAAKQAYVHEFILSLPCGYE 210
           Q  +      + +   +M G          P       +  A ++  + E +   P G  
Sbjct: 56  QRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTE-LADRPVGE- 113

Query: 211 TLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTK 270
                  LSGGQ+QR+ +ARA+   P++LLLDE  + LD  ++  +  +   L       
Sbjct: 114 -------LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGA---G 163

Query: 271 RTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 307
             +++  H L+   A    VV+ +GR+I  G   +L 
Sbjct: 164 TAILMTTHDLAQAMATCDRVVLLNGRVIADGTPQQLQ 200

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223

>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 71.6 bits (176), Expect = 3e-14
 Identities = 51/209 (24%), Positives = 111/209 (53%), Gaps = 17/209 (8%)

Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 157
           ++++   +   E+  ++G +G+GK+T   ++L L EP++G+I  +G PL+    + ++ +
Sbjct: 18  VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLS----QEIKNR 73

Query: 158 IGFVGQEPQLLQ-MDIKSNIMY-GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET-LVD 214
           IG++ +E  L   M ++  + Y    K +   +I+    QA++    +    G +T  + 
Sbjct: 74  IGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKL-QAWLERLEIV---GKKTKKIK 129

Query: 215 DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 274
           +  LS G +Q+I    A++ +P +L+LDE  S LD  +   +K  +  L+ +     T+I
Sbjct: 130 E--LSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGA---TII 184

Query: 275 VIAHRLSTI-KAVDRIVVIDDGRIIEVGN 302
             +HR+  + +  DR++++  G+ +  G 
Sbjct: 185 FSSHRMEHVEELCDRLLMLKKGQTVLYGT 213

Length = 300

>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional

 Score = 70.0 bits (172), Expect = 8e-14
 Identities = 65/228 (28%), Positives = 103/228 (45%), Gaps = 45/228 (19%)

Query: 101 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI--------YIDGFPLTDLDIR 152
           V   +   EV+ IVG SGSGK+T +N L     P  G++          D + L++ + R
Sbjct: 25  VSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERR 84

Query: 153 WL-REKIGFVGQEP-QLLQMDIKS--NI----M------YGCPKDVKNEDIEWAAKQAYV 198
            L R + GFV Q P   L+M + +  NI    M      YG   D++    +W  +    
Sbjct: 85  RLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYG---DIRATAGDWLERVEID 141

Query: 199 HEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 258
              I  LP  +         SGG +QR+ IAR ++  P ++ +DE T  LD   +  +  
Sbjct: 142 AARIDDLPTTF---------SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLD 192

Query: 259 VLHALRNDCKTKRTVIVIAHRLSTIKAV-----DRIVVIDDGRIIEVG 301
           +L  L  +      V+++ H L    AV      R++V+  GR++E G
Sbjct: 193 LLRGLVRELGL--AVVIVTHDL----AVARLLAHRLLVMKQGRVVESG 234

Length = 258

>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK

 Score = 69.9 bits (171), Expect = 8e-14
 Identities = 61/226 (26%), Positives = 98/226 (43%), Gaps = 37/226 (16%)

Query: 99  NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI------- 151
             V   +   EV+ IVG SGSGKST +  L     P  G          +L++       
Sbjct: 20  RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79

Query: 152 --RWLREKIGFVGQEPQL-LQMDIKS--NI----------MYGCPKDVKNEDIEWAAKQA 196
             R +R + GFV Q P+  L+M + +  NI           YG   +++    +W  +  
Sbjct: 80  RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYG---NIRATAQDWLEEVE 136

Query: 197 YVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 256
                I  LP  +         SGG +QR+ IAR ++  P ++ +DE T  LD   +  +
Sbjct: 137 IDPTRIDDLPRAF---------SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARL 187

Query: 257 KGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 301
             +L  L  D      VI++ H L   + +  R++V+  GR++E G
Sbjct: 188 LDLLRGLVRDLGL--AVIIVTHDLGVARLLAQRLLVMQQGRVVESG 231

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253

>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 69.8 bits (171), Expect = 8e-14
 Identities = 59/224 (26%), Positives = 101/224 (45%), Gaps = 37/224 (16%)

Query: 101 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI--------- 151
           V   +   EV+ IVG SGSGK+T +  +     P  G +          D+         
Sbjct: 25  VSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERR 84

Query: 152 RWLREKIGFVGQEPQL-LQMDIKS--NI----------MYGCPKDVKNEDIEWAAKQAYV 198
           R LR + GFV Q P+  L+M + +  NI           YG   +++ E  +W  +    
Sbjct: 85  RLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYG---NIRAEAQDWLEEVEID 141

Query: 199 HEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 258
            + I  LP  +         SGG +QR+ IAR ++  P ++ +DE T  LD   +  +  
Sbjct: 142 LDRIDDLPRTF---------SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLD 192

Query: 259 VLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 301
           +L  L  +      V+++ H L+  + + DR++V+  G+++E G
Sbjct: 193 LLRGLVRELGL--AVVIVTHDLAVARLLADRLMVMKQGQVVESG 234

Length = 258

>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter

 Score = 71.1 bits (174), Expect = 1e-13
 Identities = 55/230 (23%), Positives = 101/230 (43%), Gaps = 23/230 (10%)

Query: 78  GHVQFVNISFHYPS-RPTVPI-LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 135
             ++  ++  +  +   +    L  + L I   ++V IVG +G GKST   L   LY P 
Sbjct: 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ 395

Query: 136 DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQ 195
           +G+I +DG  ++       R+    +  +  L    I        P + ++  ++ A  Q
Sbjct: 396 EGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIG-------PDEGEHASLDNA--Q 446

Query: 196 AYVHEFILS-----LPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 250
            Y+    ++        G+ T      LS GQ++R+A+  A L D  ILL DE  +  D 
Sbjct: 447 QYLQRLEIADKVKIEDGGFSTTTA---LSTGQQKRLALICAWLEDRPILLFDEWAADQDP 503

Query: 251 ESEHYVKGVLHALRNDCKTK-RTVIVIAHRLSTIKAVDRIVVIDDGRIIE 299
               + +     L  D K + +T+I+I+H     +  D+I+ +  G I++
Sbjct: 504 A---FKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVK 550

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555

>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional

 Score = 69.4 bits (170), Expect = 2e-13
 Identities = 64/238 (26%), Positives = 115/238 (48%), Gaps = 29/238 (12%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           + F N+   Y  +  V   + +   ++  E   ++G +G+GK+T + +LL L  P  G I
Sbjct: 8   IDFRNVEKRYGDKLVV---DGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI 64

Query: 140 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMD----IKSNIM-----YGCPKDVKNEDIE 190
            + G P+     R  R+++G V   PQ   +D    ++ N++     +G           
Sbjct: 65  SLCGEPVPS-RARHARQRVGVV---PQFDNLDPDFTVRENLLVFGRYFGLSAA------A 114

Query: 191 WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 250
             A    + EF   L    +  V +  LSGG K+R+ +ARA++ DP +L+LDE T+ LD 
Sbjct: 115 ARALVPPLLEFA-KLENKADAKVGE--LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDP 171

Query: 251 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 307
           ++ H    +   LR+     +T+++  H +   + + DR+ VI++GR I  G    L+
Sbjct: 172 QARHL---MWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALI 226

Length = 306

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 70.3 bits (173), Expect = 2e-13
 Identities = 49/207 (23%), Positives = 86/207 (41%), Gaps = 67/207 (32%)

Query: 113 IVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE--KIGFVGQEPQL-LQ 169
           ++GL+G+GKST + ++  + +  +G+                    K+G++ QEPQL   
Sbjct: 36  VLGLNGAGKSTLLRIMAGVDKEFNGEA-------------RPAPGIKVGYLPQEPQLDPT 82

Query: 170 MDIKSNIMYGCPKDVK-------------NEDIEW---AAKQAYVHEFI----------- 202
             ++ N+  G  +                  D +     A+QA + E I           
Sbjct: 83  KTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRK 142

Query: 203 -------LSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES--- 252
                  L  P   +  V    LSGG+++R+A+ R +L  P +LLLDE T+ LD+ES   
Sbjct: 143 LEIAMDALRCPPW-DADVTK--LSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAW 199

Query: 253 -EHYVKGVLHALRNDCKTKRTVIVIAH 278
            E +++          +   TV+ + H
Sbjct: 200 LEQHLQ----------EYPGTVVAVTH 216

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

 Score = 68.1 bits (167), Expect = 3e-13
 Identities = 53/231 (22%), Positives = 107/231 (46%), Gaps = 36/231 (15%)

Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 157
           LN +  +++  E+  ++G +G+GK+T ++++     P +G++  DG    D D+  L E 
Sbjct: 21  LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDG----DTDLTKLPEH 76

Query: 158 ------IGFVGQEPQ-LLQMDIKSNIMYGC--PKDVKNEDIEWA--------AKQAYVHE 200
                 IG   Q+P     + ++ N+       K V      +A         ++  + E
Sbjct: 77  RIARAGIGRKFQKPTVFENLTVRENLELALNRDKSV------FASLFARLRAEERRRIDE 130

Query: 201 FILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 258
            +L+   G     D    LLS GQKQ + I   + +DP +LLLDE  + +          
Sbjct: 131 -LLAT-IGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAE 188

Query: 259 VLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLH 308
           +L +L      K +++V+ H +  ++ + D++ V+ +G ++  G+  E+ +
Sbjct: 189 LLKSL----AGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQN 235

Length = 249

>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional

 Score = 68.5 bits (167), Expect = 3e-13
 Identities = 61/222 (27%), Positives = 99/222 (44%), Gaps = 32/222 (14%)

Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL-------- 149
           L+ V L I   E+VA++G SGSGKST +  L        G I  D    + +        
Sbjct: 20  LHAVDLNIHHGEMVALLGPSGSGKSTLLRHL-------SGLITGDKSAGSHIELLGRTVQ 72

Query: 150 -------DIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVK--NEDIEWAAKQAYVH 199
                  DIR  R   G++ Q+  L+ ++ +  N++ G             W  ++    
Sbjct: 73  REGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQR 132

Query: 200 EFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 257
                   G        +  LSGGQ+QR+AIARA+++   ++L DE  ++LD ES   V 
Sbjct: 133 ALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVM 192

Query: 258 GVLHAL-RNDCKTKRTVIVIAHRLS-TIKAVDRIVVIDDGRI 297
             L  + +ND     TV+V  H++   ++  +RIV +  G +
Sbjct: 193 DTLRDINQND---GITVVVTLHQVDYALRYCERIVALRQGHV 231

Length = 262

>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 67.9 bits (166), Expect = 4e-13
 Identities = 70/254 (27%), Positives = 104/254 (40%), Gaps = 42/254 (16%)

Query: 97  ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-RLYEPSD-------GQIYIDGFPLTD 148
           IL  + L IE   V A++G +G+GKST +  L   L            G + ++G PL  
Sbjct: 16  ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75

Query: 149 LDIRWLREKIGFVGQEPQ-LLQMDIKSNIMYGC--------PKDVKNEDIEWAAKQAYVH 199
           +D   L      + Q  Q       +  ++ G             ++ +I W A      
Sbjct: 76  IDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQA------ 129

Query: 200 EFILSLPCGYETLVDDDL--LSGGQKQRIAIARAI---------LRDPAILLLDEATSAL 248
              L+L  G   LV  D+  LSGG+  R+  AR +          + P  LLLDE T+AL
Sbjct: 130 ---LAL-AGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAAL 185

Query: 249 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL- 307
           D   +H +   +  L  D       IV    L+   A DRI ++ DG I+  G  A++L 
Sbjct: 186 DLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHA-DRIAMLADGAIVAHGAPADVLT 244

Query: 308 --HKGRLYAKLVKR 319
             H  R Y   V+ 
Sbjct: 245 PAHIARCYGFAVRL 258

Length = 272

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 69.0 bits (169), Expect = 5e-13
 Identities = 74/247 (29%), Positives = 108/247 (43%), Gaps = 57/247 (23%)

Query: 96  PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS------DGQIYIDGFPLTDL 149
            ++N V L IEA E +A+VG SGSGKS     +LRL  PS       G I   G  L   
Sbjct: 23  TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLL-PSPPVVYPSGDIRFHGESLLHA 81

Query: 150 DIRWLR----EKIGFVGQEP------------QLLQM---------DIKSNIMYGCPKDV 184
             + LR     KI  + QEP            QL ++         +     +  C   V
Sbjct: 82  SEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRV 141

Query: 185 KNEDIEWAAKQ--AYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLD 242
               I  AAK+   Y H+                 LSGG++QR+ IA A+L  P +L+ D
Sbjct: 142 ---GIRQAAKRLTDYPHQ-----------------LSGGERQRVMIAMALLTRPELLIAD 181

Query: 243 EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 301
           E T+ALD   +  +  +L  L+ +      ++ I H LS ++ + DR+ V+ +GR +E  
Sbjct: 182 EPTTALDVSVQAQILQLLRELQQELNM--GLLFITHNLSIVRKLADRVAVMQNGRCVEQN 239

Query: 302 NHAELLH 308
             A L  
Sbjct: 240 RAATLFS 246

Length = 529

>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters

 Score = 66.5 bits (163), Expect = 5e-13
 Identities = 55/227 (24%), Positives = 99/227 (43%), Gaps = 47/227 (20%)

Query: 84  NISFHYP-SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLL---LRLYEPSDGQI 139
           NISF     R  +PIL      ++  E+V ++G  GSG ST +  L          +G I
Sbjct: 8   NISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDI 67

Query: 140 YIDGFPLTDLDIRWLREKIGFVGQE----PQLLQMDIKSNIMYGCPKDVKNEDIEWAAK- 194
           + +G P  +   ++  E I +V +E    P L                V+ E +++A + 
Sbjct: 68  HYNGIPYKEFAEKYPGEII-YVSEEDVHFPTLT---------------VR-ETLDFALRC 110

Query: 195 QAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE- 253
           +   +EF+  +             SGG+++R++IA A++   ++L  D +T  LDS +  
Sbjct: 111 KG--NEFVRGI-------------SGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTAL 155

Query: 254 HYVKGVLHALRNDCKTKRTVIVIAHRLS--TIKAVDRIVVIDDGRII 298
             +K +          K T  V  ++ S       D+++V+ +GR I
Sbjct: 156 EILKCIRTMAD---VLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQI 199

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202

>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 66.8 bits (163), Expect = 7e-13
 Identities = 60/229 (26%), Positives = 107/229 (46%), Gaps = 20/229 (8%)

Query: 76  LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 135
               + F  +S HY     +  L+ V L I   E+V ++G +G+GK+T +  L      +
Sbjct: 2   EKVMLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT 58

Query: 136 DGQIYIDGFPLTDLDI-RWLREKIGFVGQEPQLL-QMDIKSNIMYG---CPKDVKNEDIE 190
            G+I  DG  +TD    + +RE +  V +  ++  +M ++ N+  G     +D   E I+
Sbjct: 59  SGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIK 118

Query: 191 WAAKQAYVHEFILSLPCGYETLVD-DDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 249
           W      V+E     P  +E  +     +SGG++Q +AI RA++  P +LLLDE +  L 
Sbjct: 119 W------VYEL---FPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLA 169

Query: 250 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRII 298
                 +   +  LR    T    +V  +    +K  DR  V+++G ++
Sbjct: 170 PIIIQQIFDTIEQLREQGMT--IFLVEQNANQALKLADRGYVLENGHVV 216

Length = 237

>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional

 Score = 66.8 bits (163), Expect = 7e-13
 Identities = 64/237 (27%), Positives = 114/237 (48%), Gaps = 32/237 (13%)

Query: 84  NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 143
           N++  Y  R  V     V LT+ + E+V ++G +G+GK+T   +++ +     G I ID 
Sbjct: 8   NLAKAYKGRRVV---EDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIID- 63

Query: 144 FPLTDLDIRWL------REKIGFVGQEPQLLQ-MDIKSNIM--YGCPKDVKNEDIEWAAK 194
               D DI  L      R  IG++ QE  + + + +  N+M       D+  E  E  A 
Sbjct: 64  ----DEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRAN 119

Query: 195 QAYVHEFILSLPCGYETLVDDDL---LSGGQKQRIAIARAILRDPAILLLDEATSALDSE 251
           +  + EF +         + D +   LSGG+++R+ IARA+  +P  +LLDE  + +D  
Sbjct: 120 E-LMEEFHIEH-------LRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPI 171

Query: 252 SEHYVKGVLHALRNDCKTKRTVIVIAHRL-STIKAVDRIVVIDDGRIIEVGNHAELL 307
           S   +K ++  LR+   +   V++  H +  T+   +R  ++  G +I  G   E+L
Sbjct: 172 SVIDIKRIIEHLRD---SGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEIL 225

Length = 241

>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD

 Score = 66.4 bits (163), Expect = 1e-12
 Identities = 55/220 (25%), Positives = 100/220 (45%), Gaps = 27/220 (12%)

Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLRE 156
           LN + L ++  E+  I+G +G+GK+T ++++     P +G +   G  LT L   +  R 
Sbjct: 18  LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARA 77

Query: 157 KIGFVGQEPQ-LLQMDIKSNIMYGCPKD----------VKNEDIEWAAKQAYVHEFILSL 205
            IG   Q+P     + +  N+    P+D          +  E+ +   +     E I   
Sbjct: 78  GIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVL---ETI--- 131

Query: 206 PCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 263
             G     D    LLS GQKQ + I   +++DP +LLLDE  + +  E       +L +L
Sbjct: 132 --GLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSL 189

Query: 264 RNDCKTKRTVIVIAHRLSTIKAVDRIV-VIDDGRIIEVGN 302
                 K +V+V+ H +  ++++   V V+  G ++  G+
Sbjct: 190 ----AGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGS 225

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242

>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed

 Score = 66.3 bits (162), Expect = 1e-12
 Identities = 58/212 (27%), Positives = 101/212 (47%), Gaps = 44/212 (20%)

Query: 84  NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 143
           N+S  +  R    +L+ V L ++  +++ ++G +G+GKST V ++L L  P +G I    
Sbjct: 9   NVSVSFGQRR---VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI---- 61

Query: 144 FPLTDLDIRWLREKIGFVGQEPQLLQMDIK-----SNIMYGCPKDVKNEDIEWAAKQ--- 195
                   R  + +IG+V   PQ L +D       +  +   P   K EDI  A K+   
Sbjct: 62  -------KRNGKLRIGYV---PQKLYLDTTLPLTVNRFLRLRP-GTKKEDILPALKRVQA 110

Query: 196 AYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHY 255
            ++ +  +              LSGG+ QR+ +ARA+L  P +L+LDE T  +D   +  
Sbjct: 111 GHLIDAPMQK------------LSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVA 158

Query: 256 VKGVLHALRN--DCKTKRTVIVIAHRLSTIKA 285
           +  ++  LR   DC     V++++H L  + A
Sbjct: 159 LYDLIDQLRRELDC----AVLMVSHDLHLVMA 186

Length = 251

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 67.7 bits (166), Expect = 1e-12
 Identities = 64/214 (29%), Positives = 109/214 (50%), Gaps = 12/214 (5%)

Query: 91  SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 150
           + P V  L+   L +    V+A+VG +G+GKST + +L  +Y    G I   G  +T   
Sbjct: 13  AFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNG 72

Query: 151 IRWLREK-IGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFI--LSLP 206
            +  +E  IG + QE  L+ Q+ I  NI  G     +   I+W    A   + +  L+L 
Sbjct: 73  PKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLR 132

Query: 207 CGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSAL-DSESEHYVKGVLHALRN 265
              + LV +  LS G++Q + IA+ +  +  ++++DE T AL D+E+E   + V+  L++
Sbjct: 133 FSSDKLVGE--LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFR-VIRELKS 189

Query: 266 DCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRII 298
                R ++ I+HRL  I  + D + V  DG+ I
Sbjct: 190 Q---GRGIVYISHRLKEIFEICDDVTVFRDGQFI 220

Length = 501

>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 66.2 bits (161), Expect = 2e-12
 Identities = 65/230 (28%), Positives = 101/230 (43%), Gaps = 28/230 (12%)

Query: 96  PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL--TDLDIRW 153
           P+L  + L    + V  +VG +G GKST    L  L  P  G +   G PL  +   +  
Sbjct: 15  PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLA 74

Query: 154 LREKIGFVGQEP--QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET 211
           LR+++  V Q+P  Q+   DI S+I +     ++N  +  A     V E +        T
Sbjct: 75  LRQQVATVFQDPEQQIFYTDIDSDIAF----SLRNLGVPEAEITRRVDEAL--------T 122

Query: 212 LVDDD--------LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 263
           LVD           LS GQK+R+AIA A++     LLLDE T+ LD      +  +   +
Sbjct: 123 LVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAI---I 179

Query: 264 RNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHKGRL 312
           R        VI+ +H +  I  + D + V+  G+I+  G   E+      
Sbjct: 180 RRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACTEA 229

Length = 271

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 66.7 bits (164), Expect = 3e-12
 Identities = 56/207 (27%), Positives = 90/207 (43%), Gaps = 67/207 (32%)

Query: 113 IVGLSGSGKSTFVNLLLR----LYEPSDGQIYI-DGFPLTDLDIRWLREKIGFVGQEPQL 167
           ++GL+G+GKST    LLR    + +  +G+     G             K+G++ QEPQL
Sbjct: 38  VLGLNGAGKST----LLRIMAGVDKEFEGEARPAPGI------------KVGYLPQEPQL 81

Query: 168 -LQMDIKSNIMYGCPKDVKN-----EDI------------EWAAKQAYVHEFI------- 202
             +  ++ N+  G   +VK       +I              AA+Q  + E I       
Sbjct: 82  DPEKTVRENVEEGV-AEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWD 140

Query: 203 -----------LSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 251
                      L  P   +  V    LSGG+++R+A+ R +L  P +LLLDE T+ LD+E
Sbjct: 141 LDSQLEIAMDALRCPPW-DAKVTK--LSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAE 197

Query: 252 SEHYVKGVLHALRNDCKTKRTVIVIAH 278
           S  +++  LH          TV+ + H
Sbjct: 198 SVAWLEQFLH------DYPGTVVAVTH 218

Length = 556

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 66.0 bits (161), Expect = 5e-12
 Identities = 53/234 (22%), Positives = 108/234 (46%), Gaps = 34/234 (14%)

Query: 84  NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYID 142
           N++      P    ++ V  ++   E++ + GL G+G++  V  L   Y    +G ++I+
Sbjct: 262 NLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFIN 321

Query: 143 GFPLTDLDIR----WLREKIGFVGQEPQ----LLQMDIKSNIMYG-----CPKDVKNEDI 189
           G P+   DIR     +R  I  V ++ +    +  + +  NI        C K   +   
Sbjct: 322 GKPV---DIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAA 378

Query: 190 EWAA-----KQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEA 244
           E        ++  V      LP G         LSGG +Q+  +A+ +L +P +L+LDE 
Sbjct: 379 ELQIIGSAIQRLKVKTASPFLPIGR--------LSGGNQQKAVLAKMLLTNPRVLILDEP 430

Query: 245 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRI 297
           T  +D  +++ +  +++ L    +    +IV++  L+ +  + DR++VI +G++
Sbjct: 431 TRGVDVGAKYEIYKLINQL---AQEGVAIIVVSSELAEVLGLSDRVLVIGEGKL 481

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 66.6 bits (162), Expect = 5e-12
 Identities = 55/214 (25%), Positives = 105/214 (49%), Gaps = 16/214 (7%)

Query: 87   FHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL 146
            F    RP V  LN   +T   N++ A +G +G+GK+T +++L  L  P+ G + + G  +
Sbjct: 938  FEPSGRPAVDRLN---ITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI 994

Query: 147  -TDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILS 204
             T+LD   +R+ +G   Q   L   + +  +I++      ++    W   Q  +   +  
Sbjct: 995  ETNLDA--VRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRS----WEEAQLEMEAMLED 1048

Query: 205  LPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALR 264
                ++   +   LSGG ++++++A A + D  +++LDE TS +D  S   +  +L   R
Sbjct: 1049 TGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR 1108

Query: 265  NDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRI 297
                + RT+I+  H +     + DRI +I  GR+
Sbjct: 1109 ----SGRTIIMSTHHMDEADLLGDRIAIISQGRL 1138

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 65.6 bits (161), Expect = 7e-12
 Identities = 58/199 (29%), Positives = 91/199 (45%), Gaps = 40/199 (20%)

Query: 104 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQ 163
            I   EV+ IVG +G GK+TF  LL  + +P +G++        +L I +          
Sbjct: 361 EIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEV------DPELKISY---------- 404

Query: 164 EPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQA-----YVHEFI--LSLPCGYETLVDDD 216
           +PQ ++ D           D   ED+  +         Y  E I  L L    +  V D 
Sbjct: 405 KPQYIKPD----------YDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKD- 453

Query: 217 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR-TVIV 275
            LSGG+ QR+AIA  + RD  + LLDE ++ LD E +     V  A+R   + +  T +V
Sbjct: 454 -LSGGELQRVAIAACLSRDADLYLLDEPSAHLDVE-QRLA--VAKAIRRIAEEREATALV 509

Query: 276 IAHRLSTIKAV-DRIVVID 293
           + H +  I  + DR++V +
Sbjct: 510 VDHDIYMIDYISDRLMVFE 528

Length = 590

>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein

 Score = 63.3 bits (154), Expect = 8e-12
 Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 12/158 (7%)

Query: 97  ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 156
           + + +  T+ A E + + G +GSGK+T + +L  L  P  G++ ++G PL        R 
Sbjct: 15  LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARG 74

Query: 157 KIGFVGQEPQL-LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD 215
            + ++G  P +   + +  N+ +    D  +E +E A  +  ++ F    P         
Sbjct: 75  -LLYLGHAPGIKTTLSVLENLRFWHA-DHSDEQVEEALARVGLNGF-EDRPVAQ------ 125

Query: 216 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 253
             LS GQ++R+A+AR +L    + +LDE T+ALD    
Sbjct: 126 --LSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGV 161

CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201

>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated

 Score = 63.9 bits (156), Expect = 9e-12
 Identities = 62/242 (25%), Positives = 107/242 (44%), Gaps = 45/242 (18%)

Query: 94  TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL--RLYEPSDGQIYIDGFPLTDLDI 151
              IL  + L+I   E+ AI+G +GSGKST   ++     Y+  +G I   G  + DL+ 
Sbjct: 19  ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEP 78

Query: 152 RWLREKIG-FVG-QEPQLLQMDIKSNIMYGCPKDVKNED---IEWAAKQAYVHEFILSLP 206
              R  +G F+  Q P    ++I           V N D   + + +K+ +     L  P
Sbjct: 79  E-ERAHLGIFLAFQYP----IEIPG---------VSNADFLRLAYNSKRKFQGLPELD-P 123

Query: 207 CGYETLVDDDL-----------------LSGGQKQRIAIARAILRDPAILLLDEATSALD 249
             +  ++++ L                  SGG+K+R  I +  L D  + +LDE  S LD
Sbjct: 124 LEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLD 183

Query: 250 SESEHYVKGVLHALRNDCKTKRTVIVIAH--RLSTIKAVDRIVVIDDGRIIEVGNHAELL 307
            ++   +   ++ L        ++I+I H  RL      D + V+ +G+II+ G+ AEL 
Sbjct: 184 IDALKIIAEGINKLMTSEN---SIILITHYQRLLDYIKPDYVHVMQNGKIIKTGD-AELA 239

Query: 308 HK 309
            +
Sbjct: 240 KE 241

Length = 252

>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC

 Score = 63.8 bits (156), Expect = 9e-12
 Identities = 64/232 (27%), Positives = 100/232 (43%), Gaps = 44/232 (18%)

Query: 96  PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL--RLYEPSDGQIYIDGFPLTDLDIRW 153
            IL  V LT++  E+ AI+G +GSGKST    +     YE + G I   G  L +L+   
Sbjct: 14  EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPD- 72

Query: 154 LREKIG-FVG-QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQA---YVHEFILSLPCG 208
            R + G F+  Q P+    +I           V N +   +A  A      E  L L   
Sbjct: 73  ERARAGLFLAFQYPE----EIPG---------VSNLEFLRSALNARRSARGEEPLDLL-D 118

Query: 209 YETLVDDDL-----------------LSGGQKQRIAIARAILRDPAILLLDEATSALDSE 251
           +  L+   L                  SGG+K+R  I +  L +P + +LDE  S LD +
Sbjct: 119 FLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDID 178

Query: 252 SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV--DRIVVIDDGRIIEVG 301
           +   V   ++ LR      R+ ++I H    +  +  D + V+ DGRI++ G
Sbjct: 179 ALKIVAEGINRLREP---DRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243

>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional

 Score = 63.0 bits (153), Expect = 2e-11
 Identities = 58/220 (26%), Positives = 99/220 (45%), Gaps = 35/220 (15%)

Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 157
           L     T+    + A+VG++GSGKST    L+     + G+I I G P      + L++ 
Sbjct: 23  LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTR----QALQKN 78

Query: 158 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE-TLVDDD 216
           +  V   PQ  ++D      +  P  V  ED+    +  Y H   L      +  +V   
Sbjct: 79  L--VAYVPQSEEVD------WSFP--VLVEDVVMMGR--YGHMGWLRRAKKRDRQIVTAA 126

Query: 217 L---------------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLH 261
           L               LSGGQK+R+ +ARAI +   ++LLDE  + +D ++E  +  +L 
Sbjct: 127 LARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLR 186

Query: 262 ALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 301
            LR++    +T++V  H L ++       V+  G ++  G
Sbjct: 187 ELRDE---GKTMLVSTHNLGSVTEFCDYTVMVKGTVLASG 223

Length = 272

>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional

 Score = 62.6 bits (153), Expect = 2e-11
 Identities = 60/224 (26%), Positives = 102/224 (45%), Gaps = 34/224 (15%)

Query: 101 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWL-REK 157
           +   + A E++ +VG +G+GKST   LL R+    P  G I   G PL       L R +
Sbjct: 15  LSAEVRAGEILHLVGPNGAGKST---LLARMAGLLPGSGSIQFAGQPLEAWSAAELARHR 71

Query: 158 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL 217
                Q+     M +   +    P   + E +  A     ++E   +L       +DD L
Sbjct: 72  AYLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASA-----LNEVAEAL------GLDDKL 120

Query: 218 ------LSGGQKQRIAIARAILR-DPAI------LLLDEATSALDSESEHYVKGVLHALR 264
                 LSGG+ QR+ +A  +L+  P I      LLLDE  ++LD   +  +  +L  L 
Sbjct: 121 GRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSEL- 179

Query: 265 NDCKTKRTVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGNHAELL 307
             C+    V++ +H L+ T++  DR+ ++  G+++  G   E+L
Sbjct: 180 --CQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVL 221

Length = 248

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 64.4 bits (157), Expect = 2e-11
 Identities = 55/229 (24%), Positives = 93/229 (40%), Gaps = 27/229 (11%)

Query: 93  PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-RLYE---PSDGQIYIDGFPLTD 148
            T  IL  +   I+  E+  ++G  GSG ST +  +           +G I  DG    +
Sbjct: 72  KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEE 131

Query: 149 LDIRWLREKIGFVGQE----PQL-----LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVH 199
           +  +  R  + +  +     P L     L    +       P  V  E  E+A   A V+
Sbjct: 132 I-KKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSRE--EYAKHIADVY 188

Query: 200 EFILSLPCGYETLVDDDLL---SGGQKQRIAIARAILRDPAILLLDEATSALDSESE-HY 255
                L     T V +D +   SGG+++R++IA A L    I   D AT  LDS +   +
Sbjct: 189 MATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEF 248

Query: 256 VKGVLHALRNDCK-TKRTVIVIAHRLS--TIKAVDRIVVIDDGRIIEVG 301
           ++    AL+        T +V  ++ S    +  D+++V+ +G  I  G
Sbjct: 249 IR----ALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFG 293

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional

 Score = 63.4 bits (155), Expect = 4e-11
 Identities = 57/229 (24%), Positives = 111/229 (48%), Gaps = 24/229 (10%)

Query: 84  NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-PSDGQIYID 142
           N++   P  P +  ++ V  ++   E++ I GL G+G++  V  L   Y    +G+I+ID
Sbjct: 264 NLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFID 323

Query: 143 GFPLTDLDIR----WLREKIGFVGQEPQ----LLQMDIKSNIMYGCPKDVKNED-IEWAA 193
           G P+    IR     + + I  V ++ +    +  M +  NI             I+ AA
Sbjct: 324 GKPV---KIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAA 380

Query: 194 KQAYVHEFILSLPCGYETLVDDDL----LSGGQKQRIAIARAILRDPAILLLDEATSALD 249
           +   + E I  L     +    +L    LSGG +Q+  +A+ +L +P IL+LDE T  +D
Sbjct: 381 ELKTILESIQRLKVKTASP---ELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGID 437

Query: 250 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRI 297
             +++ +  +++ L    +    +IVI+  L  +  + DR++V+ +G++
Sbjct: 438 VGAKYEIYKLINQL---VQQGVAIIVISSELPEVLGLSDRVLVMHEGKL 483

Length = 506

>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional

 Score = 63.4 bits (154), Expect = 4e-11
 Identities = 57/200 (28%), Positives = 94/200 (47%), Gaps = 28/200 (14%)

Query: 87  FHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL 146
           +HY        LN++   +   E+V I+GL+GSGKST  NL+  +  P+ G + I G   
Sbjct: 36  YHYA-------LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKG--- 85

Query: 147 TDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLP 206
                  +    G  GQ   +  +++K  +M G  K+   E I    + A + +FI    
Sbjct: 86  ---SAALIAISSGLNGQLTGIENIELKG-LMMGLTKEKIKEIIPEIIEFADIGKFIYQPV 141

Query: 207 CGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 266
             Y         S G K R+  A ++  +P IL++DEA S  D   + + K  L  + N+
Sbjct: 142 KTY---------SSGMKSRLGFAISVHINPDILVIDEALSVGD---QTFTKKCLDKM-NE 188

Query: 267 CKTK-RTVIVIAHRLSTIKA 285
            K + +T+  I+H LS +K+
Sbjct: 189 FKEQGKTIFFISHSLSQVKS 208

Length = 549

>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA

 Score = 60.0 bits (146), Expect = 6e-11
 Identities = 52/212 (24%), Positives = 84/212 (39%), Gaps = 54/212 (25%)

Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 157
           L ++ ++I  N +V + G+SGSGKST VN  L     S     I   P         R K
Sbjct: 11  LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL---YASGKARLISFLPKFS------RNK 61

Query: 158 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL 217
           + F+ Q    LQ  I   + Y                          L  G +       
Sbjct: 62  LIFIDQ----LQFLIDVGLGY--------------------------LTLGQKL----ST 87

Query: 218 LSGGQKQRIAIARAILRDP--AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIV 275
           LSGG+ QR+ +A  +  +P   + +LDE ++ L  +  + +  V+  L +      TVI+
Sbjct: 88  LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLID---LGNTVIL 144

Query: 276 IAHRLSTIKAVDRIVVI------DDGRIIEVG 301
           I H L  + + D I+          G+++  G
Sbjct: 145 IEHNLDVLSSADWIIDFGPGSGKSGGKVVFSG 176

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176

>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 61.3 bits (150), Expect = 6e-11
 Identities = 39/103 (37%), Positives = 55/103 (53%), Gaps = 11/103 (10%)

Query: 218 LSGGQKQRIAIARAILR------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 271
           LSGG++QR+ +AR + +       P  LLLDE TSALD   +H    VL   R     + 
Sbjct: 135 LSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQH---HVLRLARQLAHERG 191

Query: 272 -TVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGNHAELLHKGRL 312
             VIV+ H L+   +  DRIV++  GR++  G  AE+L    L
Sbjct: 192 LAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLTPETL 234

Length = 258

>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional

 Score = 61.3 bits (149), Expect = 7e-11
 Identities = 53/239 (22%), Positives = 101/239 (42%), Gaps = 45/239 (18%)

Query: 93  PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP----SDGQIYIDGFPLTD 148
              P+++ V LT++   V+A+VG SGSGKS      L +       + G++ +DG P+  
Sbjct: 14  AAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAP 73

Query: 149 LDIRWLREKIGFVGQEPQ----------------LLQMDIKSN--IMYGCPKDVKNEDIE 190
             +R    KI  + Q P+                 L +   ++   +    + V  E+  
Sbjct: 74  CALR--GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAA 131

Query: 191 WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 250
               + Y  E                 +SGG  QR+ IA A+L +   ++ DE T+ LD 
Sbjct: 132 -RVLKLYPFE-----------------MSGGMLQRMMIALALLCEAPFIIADEPTTDLDV 173

Query: 251 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELLH 308
            ++  +  +L ++         ++++ H +  + +  D + V+  GRI+E G+   L +
Sbjct: 174 VAQARILDLLESIVQK--RALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230

Length = 254

>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional

 Score = 59.9 bits (146), Expect = 1e-10
 Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 48/177 (27%)

Query: 96  PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 155
            + + +  T+ A E + + G +GSGK+T + L+  L  P+ G I +DG  + D D   + 
Sbjct: 16  VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPD---VA 72

Query: 156 EKIGFVGQEPQLLQMDIKSNIMYGCPKD-VKN-----EDIE-WAA----KQAYVHEF--- 201
           E   ++G                   ++ +K      E++E WAA    ++  +      
Sbjct: 73  EACHYLG------------------HRNAMKPALTVAENLEFWAAFLGGEELDIAAALEA 114

Query: 202 -----ILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 253
                +  LP GY        LS GQK+R+A+AR ++ +  I +LDE T+ALD+ + 
Sbjct: 115 VGLAPLAHLPFGY--------LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAV 163

Length = 207

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 64/237 (27%), Positives = 103/237 (43%), Gaps = 58/237 (24%)

Query: 101 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 160
           +  ++ A E+V + GL G+G+S  + LL      + GQ+Y+DG P+   DIR  R+ I  
Sbjct: 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPI---DIRSPRDAI-- 326

Query: 161 VGQEPQLLQMDIKSNIMYGCPKDVKNEDI---------------------------EWAA 193
                       ++ IM  CP+D K E I                            W A
Sbjct: 327 ------------RAGIML-CPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEA 373

Query: 194 KQAYVHEFILSL----PCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 249
           + A    FI SL    P   + ++    LSGG +Q+  + R +  D  ++LLDE T  +D
Sbjct: 374 ENA--DRFIRSLNIKTPSREQLIM---NLSGGNQQKAILGRWLSEDMKVILLDEPTRGID 428

Query: 250 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAE 305
             ++H +  V++ L         V+ ++  L  +  V DRIVV+ +GRI       +
Sbjct: 429 VGAKHEIYNVIYEL---AAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQ 482

Length = 501

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 58.2 bits (140), Expect = 2e-10
 Identities = 45/199 (22%), Positives = 65/199 (32%), Gaps = 62/199 (31%)

Query: 108 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ-IYIDGFPLTDLDIRWLREKIGFVGQEPQ 166
            EV+ IVG  GSGK+T    L R   P  G  IYIDG  + +  +  L   I    +   
Sbjct: 2   GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAS- 60

Query: 167 LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 226
                                                               SG  + R+
Sbjct: 61  ---------------------------------------------------GSGELRLRL 69

Query: 227 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHA---LRNDCKTKRTVIVIAHRLSTI 283
           A+A A    P +L+LDE TS LD+E E  +  +      L    +   TVI+  +    +
Sbjct: 70  ALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDL 129

Query: 284 K------AVDRIVVIDDGR 296
                    DR +V+    
Sbjct: 130 GPALLRRRFDRRIVLLLIL 148

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional

 Score = 60.4 bits (146), Expect = 2e-10
 Identities = 54/205 (26%), Positives = 84/205 (40%), Gaps = 46/205 (22%)

Query: 103 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG 162
           + I      AI+G +G GKST +  L RL  P+ G +++DG  +     + +  +IG + 
Sbjct: 28  VEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLA 87

Query: 163 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILS--------------LPCG 208
           Q                 P D+  +  E  A+  Y H+ + +                 G
Sbjct: 88  QNAT-------------TPGDITVQ--ELVARGRYPHQPLFTRWRKEDEEAVTKAMQATG 132

Query: 209 YETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALD---------------SE 251
              L D   D LSGGQ+QR  IA  + ++ AI+LLDE T+ LD                E
Sbjct: 133 ITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNRE 192

Query: 252 SEHYVKGVLHALRNDCKTKRTVIVI 276
             + +  VLH L   C+    +I +
Sbjct: 193 KGYTLAAVLHDLNQACRYASHLIAL 217

Length = 265

>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 42/163 (25%), Positives = 68/163 (41%), Gaps = 10/163 (6%)

Query: 91  SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 150
           SR    +   +  T+ A E + + G +G GK+T + +L  L  P  G++  +G  L +  
Sbjct: 9   SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR 68

Query: 151 IRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGY 209
               R  I ++G  P L   +    N+ +        +     A  A        LP   
Sbjct: 69  DEPHRN-ILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQ 127

Query: 210 ETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 252
                   LS GQ++R+A+AR  L    + +LDE T+ALD   
Sbjct: 128 --------LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAG 162

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198

>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional

 Score = 58.4 bits (141), Expect = 4e-10
 Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 14/171 (8%)

Query: 83  VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 142
           + + F Y  +P   +L  +   + A  ++ + G +G+GK+T + L+  L  P  G+I  +
Sbjct: 5   IELDFDYHDQP---LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFE 61

Query: 143 GFPLTDLDIRWLREKIGFVGQEPQL-LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEF 201
              +   D+   ++++ FVG    +   + ++ N +Y          I    +  +  E 
Sbjct: 62  RQSI-KKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCR-LFSLEH 119

Query: 202 ILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 252
           ++  PCG        LLS GQK+++A+ R  +    + LLDE   ALD  S
Sbjct: 120 LIDYPCG--------LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELS 162

Length = 200

>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional

 Score = 59.7 bits (145), Expect = 4e-10
 Identities = 64/241 (26%), Positives = 105/241 (43%), Gaps = 57/241 (23%)

Query: 95  VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLDI 151
           V  +N +  ++ A E + IVG SGSGKS     L+ L   +    G    +G  + +L  
Sbjct: 29  VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPE 88

Query: 152 RWLR----EKIGFVGQEPQLL---QMDIKSNIMYGCPKDV--------KNEDIEWAAK-- 194
           + L     E+I  + Q+P       M +   +M     +V        K E  E + +  
Sbjct: 89  KELNKLRAEQISMIFQDPMTSLNPYMRVGEQLM-----EVLMLHKGMSKAEAFEESVRML 143

Query: 195 ------------QAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLD 242
                       + Y HEF                 SGG +QR+ IA A+L  P +L+ D
Sbjct: 144 DAVKMPEARKRMKMYPHEF-----------------SGGMRQRVMIAMALLCRPKLLIAD 186

Query: 243 EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 301
           E T+ALD   +  +  +L+ L+ +  T   +I+I H L  +  + D+++V+  GR +E G
Sbjct: 187 EPTTALDVTVQAQIMTLLNELKREFNT--AIIMITHDLGVVAGICDKVLVMYAGRTMEYG 244

Query: 302 N 302
           N
Sbjct: 245 N 245

Length = 330

>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

 Score = 60.1 bits (146), Expect = 4e-10
 Identities = 49/181 (27%), Positives = 80/181 (44%), Gaps = 25/181 (13%)

Query: 111 VAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQM 170
           + I G +G GKS+   +L  L+    G++               + K+ +V Q P +   
Sbjct: 481 LLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLG 529

Query: 171 DIKSNIMY-GCPKDVKNEDIEWAAKQAY---VH-EFILSLPCGYETLVD-DDLLSGGQKQ 224
            ++  I+Y    +D+K   +     +     V    IL    G+  + D  D+LSGG+KQ
Sbjct: 530 TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQ 589

Query: 225 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR-TVIVIAHRLSTI 283
           RIA+AR     P   +LDE TSA+  + E Y       +   C+    T+  ++HR S  
Sbjct: 590 RIAMARLFYHKPQFAILDECTSAVSVDVEGY-------MYRLCREFGITLFSVSHRKSLW 642

Query: 284 K 284
           K
Sbjct: 643 K 643

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659

>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

 Score = 60.1 bits (146), Expect = 5e-10
 Identities = 61/232 (26%), Positives = 100/232 (43%), Gaps = 49/232 (21%)

Query: 91  SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 150
           S P V  L++V L +  + + A++G +G+GKST +  L  +Y+   G I   G  +    
Sbjct: 7   SFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKS 66

Query: 151 IR-WLREKIGFVGQE-PQLLQMDIKSNI----------------MYGCPKDVKNE---DI 189
            +  L   I  V QE   +LQ  +  N+                MY   K + +E   DI
Sbjct: 67  SKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDI 126

Query: 190 EWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSAL- 248
           +  AK A                     LS  Q Q I IA+A   +  I+++DE TS+L 
Sbjct: 127 DPRAKVAT--------------------LSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLT 166

Query: 249 DSESEHYVKGVLHALRND-CKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRII 298
           + E  H    ++  L+   C     ++ I+H++  I  + D I ++ DG+ I
Sbjct: 167 EKEVNHLFT-IIRKLKERGC----GIVYISHKMEEIFQLCDEITILRDGQWI 213

Length = 491

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 56.7 bits (138), Expect = 5e-10
 Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 9/81 (11%)

Query: 218 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKT-KRTVIVI 276
           LSGG+K R+A+A+ +L +P +LLLDE T+ LD ES       + AL    K    TVI++
Sbjct: 71  LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLES-------IEALEEALKEYPGTVILV 123

Query: 277 AHRLSTIKAV-DRIVVIDDGR 296
           +H    +  V  +I+ ++DG+
Sbjct: 124 SHDRYFLDQVATKIIELEDGK 144

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 60.0 bits (146), Expect = 6e-10
 Identities = 60/203 (29%), Positives = 94/203 (46%), Gaps = 27/203 (13%)

Query: 104 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQ 163
           T    +VV I+G +G GKST + +L    +P+ G+   +  P  D  I+  R      G 
Sbjct: 96  TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--EDPPSWDEVIKRFR------GT 147

Query: 164 EPQ-----LLQMDIK--SNIMY--GCPKDVK---NEDIEWAAKQAYVHEFILSLPCGYET 211
           E Q     L + +++      Y    PK VK    E ++   ++    E +  L  G E 
Sbjct: 148 ELQNYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERL--GLEN 205

Query: 212 LVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKT 269
           ++D D+  LSGG+ QR+AIA A+LRD  +   DE +S LD         V+  L    + 
Sbjct: 206 VLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIREL---AED 262

Query: 270 KRTVIVIAHRLSTIKAVDRIVVI 292
            + VIV+ H L+ +  +   V I
Sbjct: 263 GKYVIVVEHDLAVLDYLSDFVHI 285

Length = 591

>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional

 Score = 57.2 bits (138), Expect = 1e-09
 Identities = 52/164 (31%), Positives = 77/164 (46%), Gaps = 15/164 (9%)

Query: 91  SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 150
           SR   P+   +   ++A E + + G +G+GK+T + +L  L     GQI IDG   T  D
Sbjct: 20  SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGD 79

Query: 151 IRWLREK-IGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCG 208
               R + + ++G  P L   +    N+ + C    +       AKQ       +    G
Sbjct: 80  ----RSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRR------AKQMPGSALAIVGLAG 129

Query: 209 YE-TLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 251
           YE TLV    LS GQK+R+A+AR  L    + LLDE  + LD E
Sbjct: 130 YEDTLVRQ--LSAGQKKRLALARLWLSPAPLWLLDEPYANLDLE 171

Length = 214

>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor

 Score = 56.0 bits (135), Expect = 2e-09
 Identities = 43/190 (22%), Positives = 69/190 (36%), Gaps = 66/190 (34%)

Query: 105 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE 164
           ++  EV+ IVG +G+GK+T V +L     P               +  W      +   +
Sbjct: 22  VKEGEVIGIVGPNGTGKTTAVKILAGQLIP------------NGDNDEWDGITPVY---K 66

Query: 165 PQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 224
           PQ +                                                 LSGG+ Q
Sbjct: 67  PQYID------------------------------------------------LSGGELQ 78

Query: 225 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK 284
           R+AIA A+LR+    L DE ++ LD E        +  L    + K+T +V+ H L+ + 
Sbjct: 79  RVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSE--EGKKTALVVEHDLAVLD 136

Query: 285 AV-DRIVVID 293
            + DRI V +
Sbjct: 137 YLSDRIHVFE 146

The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177

>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed

 Score = 56.7 bits (137), Expect = 2e-09
 Identities = 64/226 (28%), Positives = 100/226 (44%), Gaps = 26/226 (11%)

Query: 96  PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL--RLYEPSDGQIYIDGFPLTDLDIR- 152
            IL  + L +   EV AI+G +GSGKST    L     YE + G +   G  L +L    
Sbjct: 15  AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPED 74

Query: 153 WLREKIGFVGQEPQ---------LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFI- 202
              E I    Q P           LQ  + +   Y   + +   D      Q  + E I 
Sbjct: 75  RAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDF-----QDLMEEKIA 129

Query: 203 -LSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLH 261
            L +P    T   +   SGG+K+R  I +  + +P + +LDE+ S LD ++   V   ++
Sbjct: 130 LLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVN 189

Query: 262 ALRNDCKTKRTVIVIAHR---LSTIKAVDRIVVIDDGRIIEVGNHA 304
           +LR+    KR+ I++ H    L  IK  D + V+  GRI++ G+  
Sbjct: 190 SLRDG---KRSFIIVTHYQRILDYIKP-DYVHVLYQGRIVKSGDFT 231

Length = 248

>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional

 Score = 57.9 bits (140), Expect = 3e-09
 Identities = 58/223 (26%), Positives = 108/223 (48%), Gaps = 34/223 (15%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           + F + SF YP  P   +  ++   I+ +  +A+VG +G GKST + L+    +PS G +
Sbjct: 509 ISFSDASFGYPGGPL--LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV 566

Query: 140 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSN---IMYGCPKDVKNEDIEWAAKQA 196
           +           R  + ++    Q   +  +D+ SN    M  C   V  + +     +A
Sbjct: 567 F-----------RSAKVRMAVFSQH-HVDGLDLSSNPLLYMMRCFPGVPEQKL-----RA 609

Query: 197 YVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES-EHY 255
           ++  F ++   G   L     LSGGQK R+A A+   + P ILLLDE ++ LD ++ E  
Sbjct: 610 HLGSFGVT---GNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEAL 666

Query: 256 VKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRI 297
           ++G++         +  V++++H    I  +VD + V+ +G++
Sbjct: 667 IQGLV-------LFQGGVLMVSHDEHLISGSVDELWVVSEGKV 702

Length = 718

>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 56.3 bits (137), Expect = 4e-09
 Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 3/66 (4%)

Query: 84  NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 143
           N+S     R    +L+ V LT+   EVVAI+G +G+GKST +  L     P  G++ ++G
Sbjct: 7   NLSVRLGGRT---LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNG 63

Query: 144 FPLTDL 149
            PL D 
Sbjct: 64  RPLADW 69

Length = 258

>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters

 Score = 54.6 bits (132), Expect = 6e-09
 Identities = 49/223 (21%), Positives = 96/223 (43%), Gaps = 48/223 (21%)

Query: 80  VQFVNISFHYPS-RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-- 136
           + + N+++  P       +LN++   ++   + A++G SG+GK+T +++L          
Sbjct: 4   LTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVIT 63

Query: 137 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQA 196
           G+I I+G PL        +   G+V Q       D+ S      P     E + ++A   
Sbjct: 64  GEILINGRPLDKN----FQRSTGYVEQ------QDVHS------PNLTVREALRFSAL-- 105

Query: 197 YVHEFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 254
                               L  LS  Q++R+ I   +   P+IL LDE TS LDS++ +
Sbjct: 106 --------------------LRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAY 145

Query: 255 YVKGVLHALRNDCKTKRTVIVIAHRLS--TIKAVDRIVVIDDG 295
               ++  L+    + + ++   H+ S    +  DR++++  G
Sbjct: 146 ---NIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRG 185

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 52.8 bits (128), Expect = 1e-08
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           ++  N+S  Y  +    +L  + LTI   + + +VG +G+GKST + L+    EP +G +
Sbjct: 1   IELENLSKTYGGKL---LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional

 Score = 54.8 bits (132), Expect = 1e-08
 Identities = 50/230 (21%), Positives = 106/230 (46%), Gaps = 26/230 (11%)

Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 157
           L+ + L     +V+ +VG++GSGKST  N++     P+ G++  +G      ++  +   
Sbjct: 40  LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG------EVSVIAIS 93

Query: 158 IGFVGQEPQLLQMDIKSNIMYGCPKDVKN---EDIEWAAKQAYVHEFILSLPCGYETLVD 214
            G  GQ   +  ++ K   M    K++K    + IE++     + EFI      Y     
Sbjct: 94  AGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSE----LGEFIYQPVKKY----- 144

Query: 215 DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 274
               S G + ++  +  I  +P IL++DEA S  D   + + +  L  +    +  +T+ 
Sbjct: 145 ----SSGMRAKLGFSINITVNPDILVIDEALSVGD---QTFAQKCLDKIYEFKEQNKTIF 197

Query: 275 VIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTES 323
            ++H L  ++    +I  I+ G++ + G   ++L K   +    K+++++
Sbjct: 198 FVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPKYEAFLNDFKKKSKA 247

Length = 264

>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional

 Score = 54.4 bits (131), Expect = 2e-08
 Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 3/95 (3%)

Query: 218 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIA 277
           LSGG  QR+ IA AI   P +L+ DE T+ALD   +  +  +L  L+   K    +++I 
Sbjct: 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQ--KENMALVLIT 211

Query: 278 HRLSTI-KAVDRIVVIDDGRIIEVGNHAELLHKGR 311
           H L+ + +A  +I+V+  G+++E G   ++    R
Sbjct: 212 HDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAPR 246

Length = 326

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 54.4 bits (131), Expect = 3e-08
 Identities = 48/221 (21%), Positives = 104/221 (47%), Gaps = 29/221 (13%)

Query: 99  NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF---PLTDLDIRWLR 155
             +  ++   E++   GL GSG++  +N L  + + + G+I ++G    P + LD   ++
Sbjct: 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDA--VK 337

Query: 156 EKIGFVGQEPQ----LLQMDIKSNIM---------YGCPKDVKNEDIEWAAKQAYVHEFI 202
           + + ++ +  +         I  N+          Y     + +E  E   + A     +
Sbjct: 338 KGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDE--QRTAENQREL 395

Query: 203 LSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL 260
           L+L C     V+ ++  LSGG +Q++ I++ +   P +++ DE T  +D  ++  +  V+
Sbjct: 396 LALKC---HSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVM 452

Query: 261 HALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEV 300
             L +D K    +++++  L  I  V DRI V  +GR+ ++
Sbjct: 453 RQLADDGK---VILMVSSELPEIITVCDRIAVFCEGRLTQI 490

Length = 510

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 54.5 bits (131), Expect = 3e-08
 Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 3/92 (3%)

Query: 218 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIA 277
           LSGG +QR+ IA A+   PA+L+ DE T+ALD   +  +  ++  L+ +      VI I 
Sbjct: 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMG--VIFIT 226

Query: 278 HRLSTIKAV-DRIVVIDDGRIIEVGNHAELLH 308
           H +  +  + DR++V+  G  +E G+  ++ H
Sbjct: 227 HDMGVVAEIADRVLVMYQGEAVETGSVEQIFH 258

Length = 623

>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

 Score = 54.5 bits (131), Expect = 3e-08
 Identities = 50/215 (23%), Positives = 93/215 (43%), Gaps = 31/215 (14%)

Query: 96  PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR--------LYEPSDGQIYIDGFPLT 147
            +L ++ L I+  +VVA+VG SG+GK+T + ++L          Y P  G++ +      
Sbjct: 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEV-----P 451

Query: 148 DLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPC 207
              +  L         EP+  ++ I  ++      D+        A    ++   LS   
Sbjct: 452 KNTVSALIPGE----YEPEFGEVTILEHL-RSKTGDLN-------AAVEILNRAGLSDAV 499

Query: 208 GYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 267
            Y     +  LS GQK+R  +A+ +   P +LL+DE  + LD  +   V   +  L    
Sbjct: 500 LYRRKFSE--LSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAR-- 555

Query: 268 KTKRTVIVIAHRLSTIKAV--DRIVVIDDGRIIEV 300
           +   T+IV+ HR     A+  D ++++  G++   
Sbjct: 556 EAGITLIVVTHRPEVGNALRPDTLILVGYGKVPVN 590

Length = 593

>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

 Score = 52.9 bits (127), Expect = 4e-08
 Identities = 56/222 (25%), Positives = 95/222 (42%), Gaps = 38/222 (17%)

Query: 103 LTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWL-REKIG 159
             + A E++ +VG +G+GKST   LL R+       G I   G PL       L R +  
Sbjct: 20  GEVRAGEILHLVGPNGAGKST---LLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAY 76

Query: 160 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL-- 217
              Q+     M +   +    P   + E +   A         L+L        DD L  
Sbjct: 77  LSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAG-------ALAL--------DDKLGR 121

Query: 218 ----LSGGQKQRIAIARAILR-------DPAILLLDEATSALDSESEHYVKGVLHALRND 266
               LSGG+ QR+ +A  +L+          +LLLDE  ++LD   +  +  +L AL   
Sbjct: 122 STNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSAL--- 178

Query: 267 CKTKRTVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGNHAELL 307
           C+    +++ +H L+ T++   R  ++  G+++  G   E+L
Sbjct: 179 CQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVL 220

Length = 248

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score = 54.1 bits (131), Expect = 4e-08
 Identities = 59/268 (22%), Positives = 108/268 (40%), Gaps = 89/268 (33%)

Query: 72  KLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 131
           KL R    V+  N++  + + P   +  ++ L +EA E +AI+G +G GK+T +  L+  
Sbjct: 314 KLHRNALEVE--NLTKGFDNGP---LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGE 368

Query: 132 YEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNE---D 188
            EP  G             ++W                    +NI Y   +D   +   D
Sbjct: 369 LEPDSGT------------VKWSE-----------------NANIGY-YAQDHAYDFEND 398

Query: 189 I---EWAA--KQAYVHEFILSLPCGYETLV----------DDDL------LSGGQKQRIA 227
           +   +W +  +Q              E  V           DD+      LSGG+K R+ 
Sbjct: 399 LTLFDWMSQWRQ----------EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRML 448

Query: 228 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKT-KRTVIVIAH------RL 280
             + +++ P +L++DE T+ +D ES       + +L    +  + T+I ++H       L
Sbjct: 449 FGKLMMQKPNVLVMDEPTNHMDMES-------IESLNMALEKYEGTLIFVSHDREFVSSL 501

Query: 281 STIKAVDRIVVIDDGRIIEV-GNHAELL 307
           +T     RI+ I    +++  G + E L
Sbjct: 502 AT-----RIIEITPDGVVDFSGTYEEYL 524

Length = 530

>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 53.3 bits (128), Expect = 5e-08
 Identities = 65/257 (25%), Positives = 113/257 (43%), Gaps = 50/257 (19%)

Query: 83  VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 142
           + I F       V  ++ V +T+   E+  +VG SGSGKS     +  + + +  ++  D
Sbjct: 9   LTIEFKTSQGW-VKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDN-WRVTAD 66

Query: 143 GFPLTDLDIRWL--REKIGFVG-------QEP------------QLLQMDIKSNIMYGCP 181
                D+D+  L  RE+   VG       QEP            QL+Q     NI     
Sbjct: 67  RMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQ-----NIPAWTY 121

Query: 182 KDVKNEDIEWAAKQAYV---------HEFIL-SLPCGYETLVDDDLLSGGQKQRIAIARA 231
           K    +   W  ++A           H+ I+ S P  YE       L+ G+ Q++ IA A
Sbjct: 122 KGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYP--YE-------LTEGECQKVMIAIA 172

Query: 232 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIV 290
           +   P +L+ DE T++++  ++  +  +L  L  +  T  T+++I+H L  I +  D+I 
Sbjct: 173 LANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNT--TILLISHDLQMISQWADKIN 230

Query: 291 VIDDGRIIEVGNHAELL 307
           V+  G+ +E     EL+
Sbjct: 231 VLYCGQTVESAPSEELV 247

Length = 330

>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional

 Score = 53.3 bits (128), Expect = 5e-08
 Identities = 62/250 (24%), Positives = 110/250 (44%), Gaps = 40/250 (16%)

Query: 85  ISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF 144
           I F       V  ++ V +T+   E+  +VG SGSGKS     +  + +  + ++  D  
Sbjct: 11  IEFKTSDGW-VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTK-DNWRVTADRM 68

Query: 145 PLTDLDIRWL--REKIGFVG-------QEPQLL---QMDIKSNIMYGCP----KDVKNED 188
              D+D+  L  RE+   VG       QEPQ        +   +M   P    K    + 
Sbjct: 69  RFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQR 128

Query: 189 IEWAAKQAYV---------HEFIL-SLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 238
             W  ++A           H+  + S P  YE       L+ G+ Q++ IA A+   P +
Sbjct: 129 FGWRKRRAIELLHRVGIKDHKDAMRSFP--YE-------LTEGECQKVMIAIALANQPRL 179

Query: 239 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRI 297
           L+ DE T+A++  ++  +  +L  L  +  T  T+++I+H L  + +  D+I V+  G+ 
Sbjct: 180 LIADEPTNAMEPTTQAQIFRLLTRLNQNNNT--TILLISHDLQMLSQWADKINVLYCGQT 237

Query: 298 IEVGNHAELL 307
           +E     EL+
Sbjct: 238 VETAPSKELV 247

Length = 330

>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor

 Score = 52.4 bits (126), Expect = 6e-08
 Identities = 50/186 (26%), Positives = 82/186 (44%), Gaps = 25/186 (13%)

Query: 109 EVVAIVGLSGSGKSTFVNLLL--------RLYEPSDGQIYIDGFPLTDLDIRW--LREKI 158
           +V+ +VG +G GKST + +L         +  +P D    +D F  ++L   +  L E  
Sbjct: 27  QVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGD 86

Query: 159 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEF-ILSLPCGYETLVDDDL 217
             V  +PQ + +          PK VK +  E   K+    +   L        ++D ++
Sbjct: 87  VKVIVKPQYVDL---------IPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNI 137

Query: 218 --LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIV 275
             LSGG+ QR+AIA A+ RD      DE +S LD +       ++  L  D      V+V
Sbjct: 138 DQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAED---DNYVLV 194

Query: 276 IAHRLS 281
           + H L+
Sbjct: 195 VEHDLA 200

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255

>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional

 Score = 51.7 bits (125), Expect = 7e-08
 Identities = 42/178 (23%), Positives = 78/178 (43%), Gaps = 39/178 (21%)

Query: 100 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 159
            +  T+ A E+V I G +G+GK++ + +L  L  P  G++   G P+      + ++ + 
Sbjct: 19  GLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLL- 77

Query: 160 FVGQEPQLLQMDIKS------NIMYGCP-KDVKNEDIEWAAKQA-----YVHEFILSLPC 207
           ++G +P      IK+      N+ +        +++  W A        +       +P 
Sbjct: 78  YLGHQP-----GIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFED-----VPV 127

Query: 208 GYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV--LHAL 263
                     LS GQ++R+A+AR  L    + +LDE  +A+D       +GV  L AL
Sbjct: 128 RQ--------LSAGQQRRVALARLWLTRAPLWILDEPFTAID------KQGVARLEAL 171

Length = 204

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score = 52.2 bits (125), Expect = 2e-07
 Identities = 56/209 (26%), Positives = 100/209 (47%), Gaps = 47/209 (22%)

Query: 112  AIVGLSGSGKSTFVNLLL--RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQ----EP 165
            A++G+SG+GK+T +++L   +     +G I I GFP        +    G+  Q     P
Sbjct: 910  ALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARIS---GYCEQNDIHSP 966

Query: 166  QLLQMDIKSNIMYGC----PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD-DDL--- 217
            Q+    ++ +++Y      PK+V  E+     K  +V E +         LV+ D+L   
Sbjct: 967  QV---TVRESLIYSAFLRLPKEVSKEE-----KMMFVDEVM--------ELVELDNLKDA 1010

Query: 218  ---------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCK 268
                     LS  Q++R+ IA  ++ +P+I+ +DE TS LD+ +      V+  +RN   
Sbjct: 1011 IVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI---VMRTVRNTVD 1067

Query: 269  TKRTVIVIAHRLS--TIKAVDRIVVIDDG 295
            T RTV+   H+ S    +A D ++++  G
Sbjct: 1068 TGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096

Length = 1470

>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 59/245 (24%), Positives = 106/245 (43%), Gaps = 39/245 (15%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           V    +SF   +R    I +++ LT+   ++ AI+G SG GK+T + L+     P  G+I
Sbjct: 8   VDMRGVSF---TRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64

Query: 140 YIDGFPLTDLDIRWL---REKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQ 195
             DG  +  +    L   R+++  + Q   L   M++  N+ Y   +  +          
Sbjct: 65  LFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQ-------LPA 117

Query: 196 AYVHEFIL-SLPC----GYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 250
             +H  ++  L      G   L+  + LSGG  +R A+ARAI  +P +++ DE     D 
Sbjct: 118 PLLHSTVMMKLEAVGLRGAAKLMPSE-LSGGMARRAALARAIALEPDLIMFDEPFVGQDP 176

Query: 251 ESEHYVKGVL--------HALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 301
                  GVL         AL   C      +V++H +  + ++ D   ++ D +I+  G
Sbjct: 177 ----ITMGVLVKLISELNSALGVTC------VVVSHDVPEVLSIADHAYIVADKKIVAHG 226

Query: 302 NHAEL 306
           +   L
Sbjct: 227 SAQAL 231

Length = 269

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 7/82 (8%)

Query: 218 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIA 277
           LSGG  ++ A+ RA++ +P +LLLDE T+ LD E+  +++G L   +       ++I I+
Sbjct: 157 LSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQG------SIIFIS 210

Query: 278 HRLSTIKAV-DRIVVIDDGRII 298
           H  S I+ +  RIV +D G+++
Sbjct: 211 HDRSFIRNMATRIVDLDRGKLV 232

Length = 635

>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA

 Score = 47.2 bits (113), Expect = 3e-06
 Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 6/76 (7%)

Query: 218 LSGGQKQRIAIARAILR---DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 274
           LSGG+ QRI +A+ + +      + +LDE T+ L       +  VL  L        TV+
Sbjct: 170 LSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLV---DKGNTVV 226

Query: 275 VIAHRLSTIKAVDRIV 290
           VI H L  IK  D I+
Sbjct: 227 VIEHNLDVIKCADWII 242

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 47.5 bits (113), Expect = 5e-06
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 1/67 (1%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           V+ +NI+F    +  +  + ++  +++  E +AIVG SGSGKS     L+RL E + G +
Sbjct: 15  VENLNIAFMQ-EQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLV 73

Query: 140 YIDGFPL 146
             D   L
Sbjct: 74  QCDKMLL 80

Length = 623

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 47.8 bits (114), Expect = 5e-06
 Identities = 57/216 (26%), Positives = 100/216 (46%), Gaps = 31/216 (14%)

Query: 97  ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD---LDIRW 153
           ILN+V   ++   + A++G SG+GK+T +N+   L E     +   G  L +   LD  +
Sbjct: 778 ILNNVDGWVKPGTLTALMGASGAGKTTLLNV---LAERVTTGVITGGDRLVNGRPLDSSF 834

Query: 154 LREKIGFVGQEP-QLLQMDIKSNIMYGC----PKDVKNEDIEWAAKQAYVHEFILSLPCG 208
            R  IG+V Q+   L    ++ ++ +      PK V   +     K  YV E I  L   
Sbjct: 835 QR-SIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSE-----KMEYVEEVIKLL--E 886

Query: 209 YETLVDDDL------LSGGQKQRIAIARAILRDPAILL-LDEATSALDSESEHYVKGVLH 261
            E+  D  +      L+  Q++R+ I   ++  P +LL LDE TS LDS++      +  
Sbjct: 887 MESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQT---AWSICK 943

Query: 262 ALRNDCKTKRTVIVIAHRLSTI--KAVDRIVVIDDG 295
            +R      + ++   H+ S I  +  DR++++  G
Sbjct: 944 LMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKG 979

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

 Score = 47.8 bits (114), Expect = 5e-06
 Identities = 56/230 (24%), Positives = 101/230 (43%), Gaps = 34/230 (14%)

Query: 96  PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 155
           P +  V   +   E++ I GL G+ ++  V  L  + E S G I + G     ++     
Sbjct: 262 PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHG---KKINNHNAN 318

Query: 156 EKI--GF--VGQEPQ----LLQMDIKSNIMYGCPKDVKNE-----------DIEWAAKQA 196
           E I  GF  V +E +       +DI  N +    ++ KN+           D +W     
Sbjct: 319 EAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSM 378

Query: 197 YVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 256
            V       P G+ T +    LSGG +Q++ I R +L  P IL+LDE T  +D  ++  +
Sbjct: 379 RV-----KTP-GHRTQIGS--LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEI 430

Query: 257 KGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAE 305
             ++  L    K  + +I+I+  +  +  + DRI+V+ +G +  + +   
Sbjct: 431 YQLIAEL---AKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKT 477

Length = 491

>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair]

 Score = 48.0 bits (115), Expect = 5e-06
 Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 17/116 (14%)

Query: 218 LSGGQKQRIAIARAILR---DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 274
           LSGG+ QR+ +A+ + +      + +LDE T+ L  +    +  VLH L +      TVI
Sbjct: 823 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDK---GNTVI 879

Query: 275 VIAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELL-----HKGRLYAKLVKR 319
           VI H L  IK  D I+ +        G I+  G   E+      + G+   K +KR
Sbjct: 880 VIEHNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAKVKASYTGKYLKKYLKR 935

Length = 935

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 58/226 (25%), Positives = 102/226 (45%), Gaps = 42/226 (18%)

Query: 96  PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR--- 152
           P +N V  T+   E++ + GL G+G++  + +L      + G + +DG  +     R   
Sbjct: 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVV---TRSPQ 322

Query: 153 -WLREKIGFVGQEPQ----LLQMDIKSNIMYGCPKDV---KNEDIEWAAKQAYVHEFI-- 202
             L   I ++ ++ +    +L M +K N M              ++ A +Q  V +FI  
Sbjct: 323 DGLANGIVYISEDRKRDGLVLGMSVKEN-MSLTALRYFSRAGGSLKHADEQQAVSDFIRL 381

Query: 203 -------LSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHY 255
                  +    G        LLSGG +Q++AIAR ++  P +L+LDE T  +D  +   
Sbjct: 382 FNIKTPSMEQAIG--------LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGA--- 430

Query: 256 VKGVLHALRNDCKTKRTVIVIAHRLSTIKAV----DRIVVIDDGRI 297
            K  ++ L N  K +   I++    S +  V    DRI+V+ +GRI
Sbjct: 431 -KKEIYQLINQFKAEGLSIILVS--SEMPEVLGMSDRILVMHEGRI 473

Length = 501

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 6/85 (7%)

Query: 210 ETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 267
           E ++D D+  LSGG+ QR+AIA A+LRD      DE TS LD      V  ++  L    
Sbjct: 203 ENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEG- 261

Query: 268 KTKRTVIVIAHRLSTIKAVDRIVVI 292
              + V+V+ H L+ +  +   V I
Sbjct: 262 ---KYVLVVEHDLAVLDYLADNVHI 283

Length = 590

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 43/176 (24%), Positives = 82/176 (46%), Gaps = 33/176 (18%)

Query: 84  NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 143
           N+++    +    ++      ++  + +A++G +G GK+T + L+L   +   G+I+   
Sbjct: 324 NVNYQIDGKQ---LVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCG- 379

Query: 144 FPLTDLDIRWL---REKIGFVGQEPQLLQMDI----KSNIMY-GCPKDVKNEDIEWAAKQ 195
              T L++ +    R ++     +P+   MD     K  +M  G P+ V           
Sbjct: 380 ---TKLEVAYFDQHRAEL-----DPEKTVMDNLAEGKQEVMVNGRPRHV----------L 421

Query: 196 AYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 251
            Y+ +F+   P    T V    LSGG++ R+ +AR  L+   +L+LDE T+ LD E
Sbjct: 422 GYLQDFLFH-PKRAMTPVK--ALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVE 474

Length = 635

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 45.8 bits (108), Expect = 3e-05
 Identities = 41/200 (20%), Positives = 93/200 (46%), Gaps = 25/200 (12%)

Query: 96   PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 155
            P ++ +C+ +   E   ++G++G+GK+T   +L      + G   + G  +   +I  + 
Sbjct: 1953 PAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVH 2011

Query: 156  EKIGFVGQEPQLLQMD-----IKSNIMYGCPKDVKNEDIE----WAAKQAYVHEFILSLP 206
            + +G+    PQ   +D      +   +Y   + V  E+IE    W+ +   +  +   L 
Sbjct: 2012 QNMGYC---PQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLA 2068

Query: 207  CGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 266
              Y         SGG K++++ A A++  P ++LLDE T+ +D ++   +   + ++   
Sbjct: 2069 GTY---------SGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSI--- 2116

Query: 267  CKTKRTVIVIAHRLSTIKAV 286
             +  R V++ +H +   +A+
Sbjct: 2117 IREGRAVVLTSHSMEECEAL 2136

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 6/60 (10%)

Query: 219 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH 278
           SGG + RIA+ARA+  +P +LLLDE T+ LD  +  +++  L       K  +T IV++H
Sbjct: 346 SGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYL------LKWPKTFIVVSH 399

Length = 718

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 8/81 (9%)

Query: 216  DLLSGGQKQRIAIAR--AILR-DPA-ILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 271
             LLSGG+K   A+A   AI +  PA   +LDE  +ALD   +  V+ V   ++   K  +
Sbjct: 1065 SLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALD---DANVERVARLIKEMSKETQ 1121

Query: 272  TVIVIAHRLSTIKAVDRIVVI 292
              IVI HR  T++A DR+V +
Sbjct: 1122 F-IVITHRKGTMEAADRLVGV 1141

Length = 1163

>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional

 Score = 42.9 bits (101), Expect = 6e-05
 Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 18/155 (11%)

Query: 101 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 160
           + +T   + +  I G +G GKS+ + ++  + +PS G IY     + ++   +      +
Sbjct: 19  LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYC----TY 74

Query: 161 VGQEPQL-LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL-- 217
           +G    L L+M +  N+ +        E +      A +H F L        L+D+    
Sbjct: 75  IGHNLGLKLEMTVFENLKFWSEIYNSAETL-----YAAIHYFKL------HDLLDEKCYS 123

Query: 218 LSGGQKQRIAIARAILRDPAILLLDEATSALDSES 252
           LS G ++ +AIAR I     + LLDE  + L  E+
Sbjct: 124 LSSGMQKIVAIARLIACQSDLWLLDEVETNLSKEN 158

Length = 195

>gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision repair protein UvrA

 Score = 43.0 bits (102), Expect = 7e-05
 Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 8/95 (8%)

Query: 200 EFILSLPCGYETLV-DDDLLSGGQKQRIAIARAI---LRDPAILLLDEATSALDSESEHY 255
            F++ +  GY TL      LSGG+ QRI +A  I   L    + +LDE +  L       
Sbjct: 119 GFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGL-TGVLYVLDEPSIGLHPRDNDR 177

Query: 256 VKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIV 290
           +   L  LR+      TV+V+ H   TI+A D ++
Sbjct: 178 LIETLKRLRD---LGNTVLVVEHDEDTIRAADHVI 209

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 226

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 45/212 (21%), Positives = 94/212 (44%), Gaps = 25/212 (11%)

Query: 100 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR-WLREKI 158
           ++ L + A E++ + G+ G+G++     L  L     G+I ++G  +  L     L   +
Sbjct: 281 NISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL 340

Query: 159 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWA--AKQAYVHE---FILSLPCGYE--- 210
            ++ ++ Q   + + + + +       N    W   A++  V E     L++   +    
Sbjct: 341 VYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQA 400

Query: 211 --TLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD--SESEHYVKGVLHALRND 266
             TL      SGG +Q++ IA+ +   P +L++DE T  +D  + ++ Y       +R+ 
Sbjct: 401 ARTL------SGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIY-----QLIRSI 449

Query: 267 CKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRI 297
                 V+ I+  L  I +  DR++V+  G I
Sbjct: 450 AAQNVAVLFISSDLEEIEQMADRVLVMHQGEI 481

Length = 510

>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 6/76 (7%)

Query: 218 LSGGQKQRIAIARAILRD---PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 274
           LSGG+ QRI +A+ + +      + +LDE T+ L  +    +K +L  L+       TV+
Sbjct: 830 LSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDD---IKKLLEVLQRLVDKGNTVV 886

Query: 275 VIAHRLSTIKAVDRIV 290
           VI H L  IK  D I+
Sbjct: 887 VIEHNLDVIKTADYII 902

This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925

>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 15/131 (11%)

Query: 200 EFILSLPCGYETLVDD-DLLSGGQKQRIAIARAI---LRDPAILLLDEATSALDSESEHY 255
            F++ +   Y +L      LSGG+ QRI +A  I   L    + +LDE +  L       
Sbjct: 470 GFLIDVGLDYLSLSRAAGTLSGGEAQRIRLATQIGSGLTG-VLYVLDEPSIGLHQRDNRR 528

Query: 256 VKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNH-AELLHKGRLYA 314
           +   L  LR+      T+IV+ H   TI+A D ++ I  G     G H  E++  G    
Sbjct: 529 LINTLKRLRD---LGNTLIVVEHDEDTIRAADYVIDIGPG----AGEHGGEVVASGTP-- 579

Query: 315 KLVKRQTESLT 325
           + +    +SLT
Sbjct: 580 EEILANPDSLT 590

This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925

>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 5/100 (5%)

Query: 218 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIA 277
           LS G+ ++  + +A++ +P +L+LDE    LD  S   +  +L +L    ++  T++++ 
Sbjct: 136 LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLH---QSGITLVLVL 192

Query: 278 HRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKGRLYAKL 316
           +R   I   V    V+ D  + E G   E+L +  L A+L
Sbjct: 193 NRFDEIPDFVQFAGVLADCTLAETGEREEILQQA-LVAQL 231

Length = 490

>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 6/76 (7%)

Query: 218 LSGGQKQRIAIARAIL---RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 274
           LSGG+ QR+ +A  +L   + P + +LDE T+ L +   H +K +++ L++      TV+
Sbjct: 810 LSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHT---HDIKALIYVLQSLTHQGHTVV 866

Query: 275 VIAHRLSTIKAVDRIV 290
           +I H +  +K  D ++
Sbjct: 867 IIEHNMHVVKVADYVL 882

Length = 1809

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 6/58 (10%)

Query: 221 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH 278
           G K R+ +A+A+  +P ILLLDE T+ LD  +  +++ VL+  RN      T+I+I+H
Sbjct: 159 GWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE-RNS-----TMIIISH 210

Length = 530

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 21/60 (35%), Positives = 34/60 (56%)

Query: 83  VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 142
           ++I   + S    P+L++  L IE NE V +VG +G+GKST + +L       DG+I  +
Sbjct: 4   ISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYE 63

Length = 635

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 10/80 (12%)

Query: 216  DLLSGGQKQRIAIA--RAILR-DPA-ILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 271
            D LSGG+K  +A+A   AI +  PA   LLDE  +ALD   +  V  V + L+    +K 
Sbjct: 1077 DNLSGGEKTLVALALIFAIQKYRPAPFYLLDEIDAALD---DQNVSRVANYLKE--LSKN 1131

Query: 272  T-VIVIAHRLSTIKAVDRIV 290
               IVI+ R   ++  DR+V
Sbjct: 1132 AQFIVISLREEMLEKADRLV 1151

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 23/101 (22%), Positives = 37/101 (36%), Gaps = 20/101 (19%)

Query: 196 AYVH-EFILSLPCGYETLVDDDLLSGGQKQRIAIA-----RAILRDPAILLLDEATSALD 249
           A V  E I +             LSGG+K+  A+A      ++   P + +LDE    LD
Sbjct: 65  AAVSAELIFTRLQ----------LSGGEKELSALALILALASLKPRP-LYILDEIDRGLD 113

Query: 250 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIV 290
                 +   +            VIVI H     +  D+++
Sbjct: 114 PRDGQALAEAILEHLVK---GAQVIVITHLPELAELADKLI 151

ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 30/111 (27%), Positives = 57/111 (51%), Gaps = 7/111 (6%)

Query: 202 ILSLPCGYETLVDDDLL---SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 258
           IL L    +T+V D+++   SGGQK+R+     I+     L +DE ++ LDS + + +  
Sbjct: 318 ILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVK 377

Query: 259 VLHALRNDCKTKRTVIV--IAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 307
            L  + +   T+ TV++  +     T    D I+++ +G+I+  G    +L
Sbjct: 378 CLQQIVH--LTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHIL 426

Length = 1470

>gnl|CDD|213245 cd03278, ABC_SMC_barmotin, ATP-binding cassette domain of barmotin, a member of the SMC protein family

 Score = 40.1 bits (95), Expect = 5e-04
 Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 10/80 (12%)

Query: 216 DLLSGGQKQRIAIAR--AILR-DPA-ILLLDEATSALD-SESEHYVKGVLHALRNDCKTK 270
            LLSGG+K   A+A   AI R  P+   +LDE  +ALD +  E + + +L     + +  
Sbjct: 112 SLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFAR-LLKEFSKETQF- 169

Query: 271 RTVIVIAHRLSTIKAVDRIV 290
              IVI HR  T++A DR+ 
Sbjct: 170 ---IVITHRKGTMEAADRLY 186

Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18). Length = 197

>gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed

 Score = 40.8 bits (97), Expect = 9e-04
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 6/76 (7%)

Query: 218 LSGGQKQRIAIARAILRDP---AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 274
           LSGG+ QR+ +A+ + +      + +LDE T+ L  E    +  VLH L +      TV+
Sbjct: 831 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDK---GNTVV 887

Query: 275 VIAHRLSTIKAVDRIV 290
           VI H L  IK  D I+
Sbjct: 888 VIEHNLDVIKTADWII 903

Length = 943

>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair]

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 35/103 (33%), Positives = 45/103 (43%), Gaps = 19/103 (18%)

Query: 218 LSGGQKQRIAIARAI---LRDPAILLLDEATSALDSESEHYVKGVLHALR---NDCKTKR 271
           LSGG+ QRI +A  I   L    + +LDE +  L       +   L  LR   N      
Sbjct: 482 LSGGEAQRIRLATQIGSGLTG-VLYVLDEPSIGLHQRDNERLIETLKRLRDLGN------ 534

Query: 272 TVIVIAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLH 308
           TVIV+ H   TI+A D I+ I        G I+  G   ELL 
Sbjct: 535 TVIVVEHDEDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577

Length = 935

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	325
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	100.0
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	100.0
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	100.0
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	100.0
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	100.0
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	100.0
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	100.0
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	100.0
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	100.0
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	100.0
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	100.0
COG4988	559	CydD ABC-type transport system involved in cytochr	100.0
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	100.0
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	100.0
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	100.0
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	100.0
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	100.0
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	100.0
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	100.0
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	100.0
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	100.0
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	100.0
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	100.0
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	100.0
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	100.0
COG4987	573	CydC ABC-type transport system involved in cytochr	100.0
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	100.0
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	100.0
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	100.0
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	100.0
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	100.0
PLN03232	1495	ABC transporter C family member; Provisional	100.0
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	100.0
PLN03130	1622	ABC transporter C family member; Provisional	100.0
PTZ00243	1560	ABC transporter; Provisional	100.0
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	100.0
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	100.0
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	100.0
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	100.0
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	100.0
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	100.0
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	100.0
COG1127	263	Ttg2A ABC-type transport system involved in resist	100.0
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	100.0
COG3638	258	ABC-type phosphate/phosphonate transport system, A	100.0
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	100.0
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	100.0
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	100.0
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	100.0
COG2884	223	FtsE Predicted ATPase involved in cell division [C	100.0
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	100.0
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	100.0
PLN03232	1495	ABC transporter C family member; Provisional	100.0
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	100.0
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	100.0
PLN03130	1622	ABC transporter C family member; Provisional	100.0
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	100.0
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	100.0
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	100.0
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	100.0
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	100.0
PRK10522	547	multidrug transporter membrane component/ATP-bindi	100.0
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	100.0
KOG0054	1381	consensus Multidrug resistance-associated protein/	100.0
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	100.0
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	100.0
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	100.0
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	100.0
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	100.0
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	100.0
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	100.0
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	100.0
PRK13537	306	nodulation ABC transporter NodI; Provisional	100.0
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	100.0
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	100.0
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	100.0
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	100.0
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	100.0
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	100.0
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	100.0
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	100.0
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	100.0
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	100.0
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	100.0
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	100.0
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	100.0
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	100.0
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	100.0
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	100.0
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	100.0
PRK13536	340	nodulation factor exporter subunit NodI; Provision	100.0
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	100.0
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	100.0
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	100.0
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	100.0
COG0410	237	LivF ABC-type branched-chain amino acid transport	100.0
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	100.0
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	100.0
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	100.0
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	100.0
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	100.0
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	100.0
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	100.0
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	100.0
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	100.0
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	100.0
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	100.0
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	100.0
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	100.0
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	100.0
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	100.0
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	100.0
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	100.0
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	100.0
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	100.0
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	100.0
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	100.0
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	100.0
COG0411	250	LivG ABC-type branched-chain amino acid transport	100.0
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	100.0
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	100.0
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	100.0
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	100.0
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	100.0
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	100.0
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	100.0
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	100.0
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	100.0
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	100.0
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	100.0
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	100.0
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	100.0
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	100.0
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	100.0
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	100.0
PRK10908	222	cell division protein FtsE; Provisional	100.0
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	100.0
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	100.0
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	100.0
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	100.0
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	100.0
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	100.0
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	100.0
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	100.0
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	100.0
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	100.0
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	100.0
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	100.0
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	100.0
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	100.0
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	100.0
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	100.0
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	100.0
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	100.0
COG4559	259	ABC-type hemin transport system, ATPase component	100.0
cd03269	210	ABC_putative_ATPase This subfamily is involved in	100.0
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	100.0
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	100.0
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	100.0
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	100.0
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	100.0
PRK09984	262	phosphonate/organophosphate ester transporter subu	100.0
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	100.0
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	100.0
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	100.0
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	100.0
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	100.0
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	100.0
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	100.0
COG4598	256	HisP ABC-type histidine transport system, ATPase c	100.0
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	100.0
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	100.0
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	100.0
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03246	173	ABCC_Protease_Secretion This family represents the	100.0
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	100.0
COG4181	228	Predicted ABC-type transport system involved in ly	100.0
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	100.0
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	100.0
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	100.0
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	100.0
cd03299	235	ABC_ModC_like Archeal protein closely related to M	100.0
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	100.0
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	100.0
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	100.0
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	100.0
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	100.0
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	100.0
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	100.0
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	100.0
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	100.0
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	100.0
KOG0054	1381	consensus Multidrug resistance-associated protein/	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	100.0
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	100.0
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	100.0
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	100.0
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	100.0
PRK10938	490	putative molybdenum transport ATP-binding protein	100.0
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03234	226	ABCG_White The White subfamily represents ABC tran	100.0
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
PRK03695	248	vitamin B12-transporter ATPase; Provisional	100.0
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	100.0
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	100.0
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	100.0
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	100.0
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	100.0
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	100.0
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	100.0
cd03215	182	ABC_Carb_Monos_II This family represents domain II	100.0
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	100.0
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	100.0
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	100.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	100.0
PTZ00243	1560	ABC transporter; Provisional	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	100.0
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	100.0
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	100.0
COG4619	223	ABC-type uncharacterized transport system, ATPase	100.0
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	100.0
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	100.0
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	100.0
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	100.0
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	100.0
COG4525	259	TauB ABC-type taurine transport system, ATPase com	100.0
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	100.0
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
COG4152	300	ABC-type uncharacterized transport system, ATPase	100.0
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	100.0
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	100.0
cd03216	163	ABC_Carb_Monos_I This family represents the domain	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	100.0
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	100.0
COG4172	534	ABC-type uncharacterized transport system, duplica	100.0
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	100.0
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	100.0
COG3845	501	ABC-type uncharacterized transport systems, ATPase	100.0
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	100.0
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	100.0
PRK13546	264	teichoic acids export protein ATP-binding subunit;	100.0
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	100.0
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	100.0
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	100.0
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
PRK15064	530	ABC transporter ATP-binding protein; Provisional	100.0
PRK10535	648	macrolide transporter ATP-binding /permease protei	100.0
PRK15064	530	ABC transporter ATP-binding protein; Provisional	100.0
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	100.0
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	100.0
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	100.0
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	100.0
PRK10938	490	putative molybdenum transport ATP-binding protein	100.0
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	100.0
PLN03211	659	ABC transporter G-25; Provisional	100.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	100.0
COG4172	534	ABC-type uncharacterized transport system, duplica	100.0
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	100.0
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	100.0
PRK13409	590	putative ATPase RIL; Provisional	100.0
COG4674	249	Uncharacterized ABC-type transport system, ATPase	100.0
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	100.0
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	100.0
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	100.0
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	100.0
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	100.0
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	100.0
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	100.0
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	100.0
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	100.0
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	100.0
PRK11147	635	ABC transporter ATPase component; Reviewed	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	100.0
PLN03073	718	ABC transporter F family; Provisional	100.0
PRK11147	635	ABC transporter ATPase component; Reviewed	100.0
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	100.0
COG4136	213	ABC-type uncharacterized transport system, ATPase	100.0
COG0488	530	Uup ATPase components of ABC transporters with dup	100.0
COG4586	325	ABC-type uncharacterized transport system, ATPase	100.0
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
PRK13409	590	putative ATPase RIL; Provisional	100.0
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
PLN03073	718	ABC transporter F family; Provisional	100.0
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	100.0
COG4133	209	CcmA ABC-type transport system involved in cytochr	100.0
COG4178	604	ABC-type uncharacterized transport system, permeas	100.0
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	100.0
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	100.0
COG0488	530	Uup ATPase components of ABC transporters with dup	100.0
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	100.0
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	100.0
PF00005	137	ABC_tran: ABC transporter This structure is on hol	100.0
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	100.0
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	100.0
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	100.0
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	100.0
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.98
KOG0060	659	consensus Long-chain acyl-CoA transporter, ABC sup	99.98
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.97
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.97
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.97
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.97
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.96
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.96
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.96
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.96
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.96
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.96
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.95
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.95
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.95
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.95
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.95
KOG0062	582	consensus ATPase component of ABC transporters wit	99.94
KOG0064	728	consensus Peroxisomal long-chain acyl-CoA transpor	99.94
KOG0062	582	consensus ATPase component of ABC transporters wit	99.94
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.94
KOG2355	291	consensus Predicted ABC-type transport, ATPase com	99.92
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.91
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.91
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.9
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.9
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.89
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.88
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.87
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	99.86
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	99.86
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.86
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.85
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	99.85
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	99.84
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	99.82
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.82
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.8
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.79
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	99.79
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	99.79
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	99.77
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	99.77
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	99.72
cd01128	249	rho_factor Transcription termination factor rho is	99.7
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	99.69
PRK00064	361	recF recombination protein F; Reviewed	99.68
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	99.64
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	99.64
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	99.62
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	99.59
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	99.57
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.56
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	99.56
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.54
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	99.53
PRK00409	782	recombination and DNA strand exchange inhibitor pr	99.52
PRK10869	553	recombination and repair protein; Provisional	99.49
PHA02562	562	46 endonuclease subunit; Provisional	99.47
PRK08533	230	flagellar accessory protein FlaH; Reviewed	99.44
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.44
PRK13695	174	putative NTPase; Provisional	99.44
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	99.43
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	99.4
PRK03918	880	chromosome segregation protein; Provisional	99.38
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	99.37
PRK01156	895	chromosome segregation protein; Provisional	99.36
PF13304	303	AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T	99.34
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	99.32
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	99.31
COG3910	233	Predicted ATPase [General function prediction only	99.28
PRK13830	818	conjugal transfer protein TrbE; Provisional	99.27
PRK10246	1047	exonuclease subunit SbcC; Provisional	99.27
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	99.27
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.27
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	99.23
PRK02224	880	chromosome segregation protein; Provisional	99.16
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.16
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	99.11
PRK06067	234	flagellar accessory protein FlaH; Validated	99.1
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	99.03
smart00382	148	AAA ATPases associated with a variety of cellular	99.01
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	98.99
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	98.93
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	98.92
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	98.91
TIGR00611	365	recf recF protein. All proteins in this family for	98.89
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.89
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	98.85
TIGR00767	415	rho transcription termination factor Rho. Members	98.84
PRK05399	854	DNA mismatch repair protein MutS; Provisional	98.82
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	98.79
PRK13891	852	conjugal transfer protein TrbE; Provisional	98.78
PRK14079	349	recF recombination protein F; Provisional	98.78
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.75
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.72
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	98.72
PRK09825	176	idnK D-gluconate kinase; Provisional	98.71
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	98.7
PRK08149	428	ATP synthase SpaL; Validated	98.69
PRK00300	205	gmk guanylate kinase; Provisional	98.67
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	98.65
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.64
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	98.63
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	98.6
PRK01889	356	GTPase RsgA; Reviewed	98.59
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.54
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	98.5
PRK13898	800	type IV secretion system ATPase VirB4; Provisional	98.49
PRK09862	506	putative ATP-dependent protease; Provisional	98.46
PF13555	62	AAA_29: P-loop containing region of AAA domain	98.46
PRK07594	433	type III secretion system ATPase SsaN; Validated	98.45
PF09818	448	ABC_ATPase: Predicted ATPase of the ABC class; Int	98.45
PRK10416	318	signal recognition particle-docking protein FtsY;	98.44
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	98.44
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.42
PLN02796	347	D-glycerate 3-kinase	98.4
PRK06315	442	type III secretion system ATPase; Provisional	98.4
PRK13873	811	conjugal transfer ATPase TrbE; Provisional	98.37
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	98.37
PRK07960	455	fliI flagellum-specific ATP synthase; Validated	98.36
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.36
PRK09099	441	type III secretion system ATPase; Provisional	98.35
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	98.34
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	98.34
PF13558	90	SbcCD_C: Putative exonuclease SbcCD, C subunit; PD	98.33

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.5e-73  Score=557.66  Aligned_cols=314  Identities=50%  Similarity=0.817  Sum_probs=293.9

Q ss_pred             EeeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcccccccccc-CCcccE
Q 020527            2 AVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQ-RLMGHV   80 (325)
Q Consensus         2 ~~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~i   80 (325)
                      ++++|++++..|+||.|.+++|++|...+..++..++..+..+.++..|.+|+++++|..|.....  +...+ ...+.|
T Consensus       389 iL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~--G~~~p~~~~G~I  466 (716)
T KOG0058|consen  389 ILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLT--GTLAPDHLQGVI  466 (716)
T ss_pred             HHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCC--CccccccccceE
Confidence            578899999999999999999999999999999999999999999999999999999998864322  22112 345689


Q ss_pred             EEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 020527           81 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF  160 (325)
Q Consensus        81 ~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~  160 (325)
                      +++||+|+|+.+++.++|+|+||+|+|||++|||||||+||||+.++|.++|+|++|+|.+||+|+.+++...+|++||+
T Consensus       467 eF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~  546 (716)
T KOG0058|consen  467 EFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGL  546 (716)
T ss_pred             EEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeee
Confidence            99999999999888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCC--CCChHHHHHHHHHHHHcCCCCE
Q 020527          161 VGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAI  238 (325)
Q Consensus       161 v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~LSgGq~QRv~iAral~~~p~l  238 (325)
                      |.|+|.||..||+|||.||.. ..+++++..+.+.+..++++..+|.||+|.++++  +||||||||+||||||++||.|
T Consensus       547 V~QEPvLFs~sI~eNI~YG~~-~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~V  625 (716)
T KOG0058|consen  547 VGQEPVLFSGSIRENIAYGLD-NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRV  625 (716)
T ss_pred             eeccceeecccHHHHHhcCCC-CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCE
Confidence            999999999999999999965 7789999999999999999999999999999964  8999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcC-HHHHHHH
Q 020527          239 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG-RLYAKLV  317 (325)
Q Consensus       239 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~-~~~~~~~  317 (325)
                      |||||+||+||.+++..+.+.|.++.+    ++|||+|+|+++.++.||+|+++++|++++.|++++++++. ++|.+++
T Consensus       626 LILDEATSALDaeSE~lVq~aL~~~~~----~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~gly~~Lv  701 (716)
T KOG0058|consen  626 LILDEATSALDAESEYLVQEALDRLMQ----GRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKPNGLYAKLV  701 (716)
T ss_pred             EEEechhhhcchhhHHHHHHHHHHhhc----CCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhCcccHHHHHH
Confidence            999999999999999999999998864    68999999999999999999999999999999999999987 7999999


Q ss_pred             HHhhh
Q 020527          318 KRQTE  322 (325)
Q Consensus       318 ~~~~~  322 (325)
                      ++|..
T Consensus       702 ~~q~~  706 (716)
T KOG0058|consen  702 QRQLD  706 (716)
T ss_pred             HHhcc
Confidence            98753

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=100.00  E-value=8.8e-72  Score=566.40  Aligned_cols=313  Identities=43%  Similarity=0.678  Sum_probs=290.4

Q ss_pred             EeeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEE
Q 020527            2 AVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQ   81 (325)
Q Consensus         2 ~~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~   81 (325)
                      ++|+|+++|++|++|+|+++||.++.+.+..|+..+++.+.++++...+.+|+.++++.++|...+......+...+.|+
T Consensus       394 iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~I~  473 (709)
T COG2274         394 ILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIE  473 (709)
T ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccCceEE
Confidence            68999999999999999999999999999999999999999999999999999999999988543221112233445799


Q ss_pred             EEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 020527           82 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV  161 (325)
Q Consensus        82 ~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v  161 (325)
                      ++||+|+|+.. +.++|+|+||+|++||++||+|+||||||||+|+|+|+|+|++|+|++||.|++..+...+|++||||
T Consensus       474 ~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V  552 (709)
T COG2274         474 FENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYV  552 (709)
T ss_pred             EEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEE
Confidence            99999999865 34799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEE
Q 020527          162 GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAIL  239 (325)
Q Consensus       162 ~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~ll  239 (325)
                      +|++.+|++|++||++++. +...++++.++++.+++++++.++|.||++.+++  .+||||||||++|||||+++|+||
T Consensus       553 ~Q~~~Lf~gSI~eNi~l~~-p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~IL  631 (709)
T COG2274         553 LQDPFLFSGSIRENIALGN-PEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKIL  631 (709)
T ss_pred             cccchhhcCcHHHHHhcCC-CCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEE
Confidence            9999999999999999985 4566789999999999999999999999999974  689999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHHH
Q 020527          240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKR  319 (325)
Q Consensus       240 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~  319 (325)
                      |||||||+||+.+++.+.+.|.++.    .|+|+|+|||+++.++.||||+||++|+|+++|+++++++.++.|.++++.
T Consensus       632 lLDEaTSaLD~~sE~~I~~~L~~~~----~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~~g~y~~l~~~  707 (709)
T COG2274         632 LLDEATSALDPETEAIILQNLLQIL----QGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGGLYARLYQQ  707 (709)
T ss_pred             EEeCcccccCHhHHHHHHHHHHHHh----cCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHhcChHHHHHhc
Confidence            9999999999999999999999985    478999999999999999999999999999999999999999999999986


Q ss_pred             h
Q 020527          320 Q  320 (325)
Q Consensus       320 ~  320 (325)
                      |
T Consensus       708 q  708 (709)
T COG2274         708 Q  708 (709)
T ss_pred             c
Confidence            5

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.5e-66  Score=535.16  Aligned_cols=308  Identities=37%  Similarity=0.514  Sum_probs=280.3

Q ss_pred             EeeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEE
Q 020527            2 AVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQ   81 (325)
Q Consensus         2 ~~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~   81 (325)
                      ++++|+|++..|.+|+|.++++..+...+..|+..+...+..++++..+++|+.++++.+++.... . .......+.|+
T Consensus       376 il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~-~-~~~~~~~~~I~  453 (686)
T TIGR03797       376 LFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEA-K-TDPGKLSGAIE  453 (686)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC-c-CCCCCCCceEE
Confidence            457899999999999999999999999999999999999999999999999999999876653211 1 11111234699


Q ss_pred             EEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 020527           82 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV  161 (325)
Q Consensus        82 ~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v  161 (325)
                      ++||+|+|++. ++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||+++.+++...+|++||||
T Consensus       454 ~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v  532 (686)
T TIGR03797       454 VDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVV  532 (686)
T ss_pred             EEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEE
Confidence            99999999643 35799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEE
Q 020527          162 GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAIL  239 (325)
Q Consensus       162 ~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~ll  239 (325)
                      ||++.+|++|++|||.++.+  .+++++.++++.++++++++.+|.|+++.+++  .+||||||||++|||||+++|++|
T Consensus       533 ~Q~~~lf~gTI~eNi~~~~~--~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iL  610 (686)
T TIGR03797       533 LQNGRLMSGSIFENIAGGAP--LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRIL  610 (686)
T ss_pred             ccCCccCcccHHHHHhcCCC--CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence            99999999999999999843  67888999999999999999999999998874  679999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHHH
Q 020527          240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKR  319 (325)
Q Consensus       240 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~  319 (325)
                      |||||||+||+.+++++.+.++++      ++|+|+|||+++.+..||+|++|++|++++.|++++++++++.|++++..
T Consensus       611 iLDEpTS~LD~~te~~i~~~L~~~------~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~~~~y~~l~~~  684 (686)
T TIGR03797       611 LFDEATSALDNRTQAIVSESLERL------KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREGLFAQLARR  684 (686)
T ss_pred             EEeCCccCCCHHHHHHHHHHHHHh------CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHh
Confidence            999999999999999999998876      46999999999999999999999999999999999999988999999886


Q ss_pred             h
Q 020527          320 Q  320 (325)
Q Consensus       320 ~  320 (325)
                      |
T Consensus       685 q  685 (686)
T TIGR03797       685 Q  685 (686)
T ss_pred             c
Confidence            5

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=100.00  E-value=7.1e-66  Score=519.72  Aligned_cols=312  Identities=47%  Similarity=0.774  Sum_probs=285.4

Q ss_pred             EeeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEE
Q 020527            2 AVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQ   81 (325)
Q Consensus         2 ~~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~   81 (325)
                      ++++|++++..|.+++|.+++|+.|...+..|+..+...+..++.+..+++|++++++.+++.......  .....+.|+
T Consensus       253 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~--~~~~~~~I~  330 (567)
T COG1132         253 VLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP--LKDTIGSIE  330 (567)
T ss_pred             HHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC--CCCCCCeEE
Confidence            356789999999999999999999999999999999999999999999999999999987653222111  112234699


Q ss_pred             EEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 020527           82 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV  161 (325)
Q Consensus        82 ~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v  161 (325)
                      ++||+|+|+++  +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||+++++++...+|++|++|
T Consensus       331 f~~vsf~y~~~--~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V  408 (567)
T COG1132         331 FENVSFSYPGK--KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIV  408 (567)
T ss_pred             EEEEEEEcCCC--CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEE
Confidence            99999999842  4799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEE
Q 020527          162 GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAIL  239 (325)
Q Consensus       162 ~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~ll  239 (325)
                      ||++.+|++||+|||.+|.+ +.+++++.++++.+++++++.++|.|+++.+++  .+||||||||++||||++++|++|
T Consensus       409 ~Qd~~LF~~TI~~NI~~g~~-~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~IL  487 (567)
T COG1132         409 SQDPLLFSGTIRENIALGRP-DATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPIL  487 (567)
T ss_pred             cccceeecccHHHHHhcCCC-CCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEE
Confidence            99999999999999999954 477899999999999999999999999999983  689999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHHH
Q 020527          240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKR  319 (325)
Q Consensus       240 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~  319 (325)
                      |||||||+||+.++..+.+.+.++.+    ++|+++|+|+++.++.||+|++|++|++++.|+|++++++++.|+++++.
T Consensus       488 ILDEaTSalD~~tE~~I~~~l~~l~~----~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~g~y~~l~~~  563 (567)
T COG1132         488 ILDEATSALDTETEALIQDALKKLLK----GRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARLYQA  563 (567)
T ss_pred             EEeccccccCHHhHHHHHHHHHHHhc----CCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999998753    57999999999999999999999999999999999999999999999998


Q ss_pred             hhh
Q 020527          320 QTE  322 (325)
Q Consensus       320 ~~~  322 (325)
                      |..
T Consensus       564 ~~~  566 (567)
T COG1132         564 QGG  566 (567)
T ss_pred             hhc
Confidence            753

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=100.00  E-value=5.3e-66  Score=532.80  Aligned_cols=310  Identities=34%  Similarity=0.547  Sum_probs=279.5

Q ss_pred             EeeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEE
Q 020527            2 AVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQ   81 (325)
Q Consensus         2 ~~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~   81 (325)
                      ++++|++++..|++|+|+++++..+...+..|+..+...+..++.+..+.+|+.++++.+++..........+...+.|+
T Consensus       396 il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~~I~  475 (708)
T TIGR01193       396 ILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNLNGDIV  475 (708)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCCCCCCcEE
Confidence            45789999999999999999999999999999999999999999999999999999988765322111011122234699


Q ss_pred             EEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 020527           82 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV  161 (325)
Q Consensus        82 ~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v  161 (325)
                      ++||+|+|+..  +++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|++||.++.+++...+|++||||
T Consensus       476 ~~~vsf~y~~~--~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v  553 (708)
T TIGR01193       476 INDVSYSYGYG--SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYL  553 (708)
T ss_pred             EEEEEEEcCCC--CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEE
Confidence            99999999742  4699999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEE
Q 020527          162 GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAIL  239 (325)
Q Consensus       162 ~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~ll  239 (325)
                      ||++.+|++|++|||.++..+..+++++.++++.+++++++.++|.|+++.+++  .+||||||||++||||++++|++|
T Consensus       554 ~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~il  633 (708)
T TIGR01193       554 PQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVL  633 (708)
T ss_pred             ecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEE
Confidence            999999999999999997434567888999999999999999999999998864  689999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHH
Q 020527          240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK  318 (325)
Q Consensus       240 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~  318 (325)
                      |||||||+||+.+++.+.+.|.++     +++|+|+|||+++.+..||+|++|++|++++.|++++++++++.|+++++
T Consensus       634 iLDE~Ts~LD~~te~~i~~~L~~~-----~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~~~~y~~l~~  707 (708)
T TIGR01193       634 ILDESTSNLDTITEKKIVNNLLNL-----QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFYASLIH  707 (708)
T ss_pred             EEeCccccCCHHHHHHHHHHHHHh-----cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhcCCcHHHHhh
Confidence            999999999999999999999875     26799999999999989999999999999999999999988888988874

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=100.00  E-value=1.5e-65  Score=518.78  Aligned_cols=312  Identities=39%  Similarity=0.613  Sum_probs=281.3

Q ss_pred             eeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEEE
Q 020527            3 VLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQF   82 (325)
Q Consensus         3 ~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   82 (325)
                      +++|+++++.|.+|+|+++++..+...+..|+..+...+..++.+..+.+|+.++++.+++.....  ....+..+.|++
T Consensus       267 ~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~--~~~~~~~~~i~~  344 (582)
T PRK11176        267 LYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGK--RVIERAKGDIEF  344 (582)
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCC--cCCCCCCCeEEE
Confidence            467889999999999999999999999999999999999999999999999999998765422111  111122235999


Q ss_pred             EEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEc
Q 020527           83 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG  162 (325)
Q Consensus        83 ~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~  162 (325)
                      +||+|+|+++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++...+|++|+|+|
T Consensus       345 ~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~  423 (582)
T PRK11176        345 RNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVS  423 (582)
T ss_pred             EEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEc
Confidence            9999999753 357999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEE
Q 020527          163 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILL  240 (325)
Q Consensus       163 Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~lll  240 (325)
                      |++.+|++|++|||.++.+...+++++.++++.++++++++++|.|+++.++.  .+||||||||++|||||+++|+++|
T Consensus       424 Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ili  503 (582)
T PRK11176        424 QNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILI  503 (582)
T ss_pred             cCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEE
Confidence            99999999999999998543467889999999999999999999999998874  6799999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHh
Q 020527          241 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQ  320 (325)
Q Consensus       241 lDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~  320 (325)
                      ||||||+||++++..+.+.+.++.    +++|+|+|||+++.++.||+|++|++|++++.|++++++..++.|++++..|
T Consensus       504 lDEptsaLD~~t~~~i~~~l~~~~----~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~~~y~~l~~~~  579 (582)
T PRK11176        504 LDEATSALDTESERAIQAALDELQ----KNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNGVYAQLHKMQ  579 (582)
T ss_pred             EECccccCCHHHHHHHHHHHHHHh----CCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhCCChHHHHHHHH
Confidence            999999999999999999999884    3679999999999999999999999999999999999999888999999876


Q ss_pred             h
Q 020527          321 T  321 (325)
Q Consensus       321 ~  321 (325)
                      .
T Consensus       580 ~  580 (582)
T PRK11176        580 F  580 (582)
T ss_pred             h
Confidence            4

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=100.00  E-value=9.3e-66  Score=531.23  Aligned_cols=308  Identities=34%  Similarity=0.553  Sum_probs=277.8

Q ss_pred             EeeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcccc----c-cccc-cC
Q 020527            2 AVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS----E-GVKL-QR   75 (325)
Q Consensus         2 ~~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~----~-~~~~-~~   75 (325)
                      ++++|+|++..|++|+|.++++..+...+..|+..+...+..++++..+.+|+.++++.+++.....    . .... +.
T Consensus       394 il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~  473 (710)
T TIGR03796       394 ILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPR  473 (710)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCC
Confidence            4578999999999999999999999999999999999999999999999999999998876532211    0 0011 11


Q ss_pred             CcccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHh
Q 020527           76 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR  155 (325)
Q Consensus        76 ~~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r  155 (325)
                      ..+.|+++||+|+|++. ++++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+++...+|
T Consensus       474 ~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr  552 (710)
T TIGR03796       474 LSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLA  552 (710)
T ss_pred             CCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHH
Confidence            23469999999999853 35799999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHc
Q 020527          156 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAIL  233 (325)
Q Consensus       156 ~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~  233 (325)
                      ++|+||||++.+|++|++|||.++. +..+++++.++++.++++++++++|.|+++.+++  .+||||||||++|||||+
T Consensus       553 ~~i~~v~Q~~~lf~gTi~eNi~l~~-~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall  631 (710)
T TIGR03796       553 NSVAMVDQDIFLFEGTVRDNLTLWD-PTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALV  631 (710)
T ss_pred             hheeEEecCChhhhccHHHHhhCCC-CCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999874 3567888999999999999999999999998874  689999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHH
Q 020527          234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLY  313 (325)
Q Consensus       234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~  313 (325)
                      ++|++||||||||+||+.+++++.+.+++      .++|+|+|||+++.+..||||++|++|++++.|++++++++++.|
T Consensus       632 ~~p~iliLDEptS~LD~~te~~i~~~l~~------~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~~~~y  705 (710)
T TIGR03796       632 RNPSILILDEATSALDPETEKIIDDNLRR------RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVGGAY  705 (710)
T ss_pred             hCCCEEEEECccccCCHHHHHHHHHHHHh------cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHcCCcH
Confidence            99999999999999999999999999875      267999999999999999999999999999999999999988889


Q ss_pred             HHHH
Q 020527          314 AKLV  317 (325)
Q Consensus       314 ~~~~  317 (325)
                      ++++
T Consensus       706 ~~l~  709 (710)
T TIGR03796       706 ARLI  709 (710)
T ss_pred             HHHh
Confidence            8876

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=2.1e-65  Score=518.42  Aligned_cols=308  Identities=30%  Similarity=0.470  Sum_probs=269.3

Q ss_pred             hHHHHhcCCcCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcccccccccc-C
Q 020527            6 GGMSIMIGQVSPEQL---------TKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQ-R   75 (325)
Q Consensus         6 g~~~v~~g~it~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~-~   75 (325)
                      +++.+ .|.+|+|.+         +++..+...+..|+..+...+..+.++..+.+|+.++++.+++.... .....+ .
T Consensus       268 ~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~-~~~~~~~~  345 (588)
T PRK11174        268 FGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLETPLAHPQQ-GEKELASN  345 (588)
T ss_pred             HHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC-CccccCCC
Confidence            44443 488888864         22335667788999999999999999999999999999876542211 111111 1


Q ss_pred             CcccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHh
Q 020527           76 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR  155 (325)
Q Consensus        76 ~~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r  155 (325)
                      ....|+++||+|.|+++  +++|+|+||+|++||++||+||||||||||+++|+|++ |++|+|.+||.++.+++...+|
T Consensus       346 ~~~~i~~~~vsf~~~~~--~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr  422 (588)
T PRK11174        346 DPVTIEAEDLEILSPDG--KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWR  422 (588)
T ss_pred             CCceEEEEeeEEeccCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHH
Confidence            12359999999877542  46999999999999999999999999999999999999 9999999999999999999999


Q ss_pred             cceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHc
Q 020527          156 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAIL  233 (325)
Q Consensus       156 ~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~  233 (325)
                      ++|+||||+|.+|++|++|||.++. +..+++++.++++.++++++++++|.|+++.+++  .+||||||||++|||||+
T Consensus       423 ~~i~~v~Q~~~LF~~TI~eNI~~g~-~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll  501 (588)
T PRK11174        423 KHLSWVGQNPQLPHGTLRDNVLLGN-PDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALL  501 (588)
T ss_pred             hheEEecCCCcCCCcCHHHHhhcCC-CCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999984 4577899999999999999999999999998874  579999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHH
Q 020527          234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLY  313 (325)
Q Consensus       234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~  313 (325)
                      ++|+|||||||||+||+++++.+.+.|.++.    +++|+|+|||+++.+..||+|++|++|++++.|++++++++++.|
T Consensus       502 ~~~~IliLDE~TSaLD~~te~~i~~~l~~~~----~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~~~~~y  577 (588)
T PRK11174        502 QPCQLLLLDEPTASLDAHSEQLVMQALNAAS----RRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQAGGLF  577 (588)
T ss_pred             cCCCEEEEeCCccCCCHHHHHHHHHHHHHHh----CCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHHhcchHH
Confidence            9999999999999999999999999998884    368999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhc
Q 020527          314 AKLVKRQTES  323 (325)
Q Consensus       314 ~~~~~~~~~~  323 (325)
                      ++++..|.+.
T Consensus       578 ~~l~~~q~~~  587 (588)
T PRK11174        578 ATLLAHRQEE  587 (588)
T ss_pred             HHHHHHhhcC
Confidence            9999988764

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=2e-65  Score=529.61  Aligned_cols=315  Identities=46%  Similarity=0.707  Sum_probs=286.0

Q ss_pred             EeeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcccc-ccccccCCcccE
Q 020527            2 AVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS-EGVKLQRLMGHV   80 (325)
Q Consensus         2 ~~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~i   80 (325)
                      .+|+|++++..|.+++.+++-.+.....-...+......+.++.++..|+.+++.+++.+|...... .+...+...+.|
T Consensus       909 ~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I  988 (1228)
T KOG0055|consen  909 SFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDI  988 (1228)
T ss_pred             HHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeEE
Confidence            4789999999999999998765555545455566777888899999999999999999988543221 221123345689


Q ss_pred             EEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 020527           81 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF  160 (325)
Q Consensus        81 ~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~  160 (325)
                      +++||+|+||.+++.++|+|+||+|++|+.+||||||||||||.+.+|-++|.|++|.|.+||.|+++++.+.+|+++|.
T Consensus       989 ~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~l 1068 (1228)
T KOG0055|consen  989 EFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGL 1068 (1228)
T ss_pred             EEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcce
Confidence            99999999999888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCCCE
Q 020527          161 VGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPAI  238 (325)
Q Consensus       161 v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p~l  238 (325)
                      |.|+|.||+.|++|||+||.. ..+.+++.++++.+.+++++..+|.||+|.++  +.+||||||||+|||||+++||+|
T Consensus      1069 VsQEP~LF~~TIrENI~YG~~-~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkI 1147 (1228)
T KOG0055|consen 1069 VSQEPVLFNGTIRENIAYGSE-EVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKI 1147 (1228)
T ss_pred             eccCchhhcccHHHHHhccCC-CCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCe
Confidence            999999999999999999943 37889999999999999999999999999998  468999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHH
Q 020527          239 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK  318 (325)
Q Consensus       239 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~  318 (325)
                      |||||+||+||.++++.+.+.|++..    .|+|.|+|+|+++.++.||.|+|+++|+|+|.|+|++|+++++.|.++++
T Consensus      1148 LLLDEATSALDseSErvVQeALd~a~----~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~~~G~Y~~Lv~ 1223 (1228)
T KOG0055|consen 1148 LLLDEATSALDSESERVVQEALDRAM----EGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLAKRGIYFRLVQ 1223 (1228)
T ss_pred             eeeeccchhhhhhhHHHHHHHHHHhh----cCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHHHhCCCchHHHhh
Confidence            99999999999999999999999985    48899999999999999999999999999999999999999999999998


Q ss_pred             Hhh
Q 020527          319 RQT  321 (325)
Q Consensus       319 ~~~  321 (325)
                      .|.
T Consensus      1224 ~q~ 1226 (1228)
T KOG0055|consen 1224 LQS 1226 (1228)
T ss_pred             hcc
Confidence            764

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=100.00  E-value=4.1e-65  Score=525.73  Aligned_cols=306  Identities=43%  Similarity=0.738  Sum_probs=274.0

Q ss_pred             eeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEEE
Q 020527            3 VLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQF   82 (325)
Q Consensus         3 ~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   82 (325)
                      +++|++++..|.||+|.++++..|...+..|+..+...+..++++..+.+|+.++++.+++..... .....+..+.|++
T Consensus       403 l~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~-~~~~~~~~~~I~~  481 (711)
T TIGR00958       403 LYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTG-TLAPLNLEGLIEF  481 (711)
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC-CCCCCCCCCeEEE
Confidence            467899999999999999999999999999999999999999999999999999998876532111 1111122346999


Q ss_pred             EEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEc
Q 020527           83 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG  162 (325)
Q Consensus        83 ~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~  162 (325)
                      +||+|+|++++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+++...+|++|+|||
T Consensus       482 ~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~  561 (711)
T TIGR00958       482 QDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVG  561 (711)
T ss_pred             EEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEe
Confidence            99999998643357999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEE
Q 020527          163 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILL  240 (325)
Q Consensus       163 Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~lll  240 (325)
                      |+|.+|++|++|||.++.+ ..+++++.++++.++++++++++|.|+++.+++  .+||||||||++||||++++|+|+|
T Consensus       562 Q~~~lF~gTIreNI~~g~~-~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILI  640 (711)
T TIGR00958       562 QEPVLFSGSVRENIAYGLT-DTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLI  640 (711)
T ss_pred             cCccccccCHHHHHhcCCC-CCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence            9999999999999999853 456788999999999999999999999998874  5899999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHH
Q 020527          241 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKL  316 (325)
Q Consensus       241 lDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~  316 (325)
                      ||||||+||+++++.+.+ .. .    .+++|+|+|||+++.+..||+|++|++|+|++.|++++++++++.|+++
T Consensus       641 LDEpTSaLD~~te~~i~~-~~-~----~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~~~y~~l  710 (711)
T TIGR00958       641 LDEATSALDAECEQLLQE-SR-S----RASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYKHL  710 (711)
T ss_pred             EEccccccCHHHHHHHHH-hh-c----cCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCCCchHhc
Confidence            999999999999998887 22 1    2478999999999999899999999999999999999999888888775

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=100.00  E-value=1.5e-64  Score=520.94  Aligned_cols=302  Identities=37%  Similarity=0.579  Sum_probs=272.6

Q ss_pred             EeeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEE
Q 020527            2 AVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQ   81 (325)
Q Consensus         2 ~~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~   81 (325)
                      ++++|++++..|.+|+|.++++..+...+..|+..+...+..++.+..+.+|+.++++.+++..............+.|+
T Consensus       386 il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~I~  465 (694)
T TIGR03375       386 IVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTRFLHRPRLQGEIE  465 (694)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCccceEE
Confidence            45789999999999999999999999999999999999999999999999999999988765322111111111234699


Q ss_pred             EEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 020527           82 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV  161 (325)
Q Consensus        82 ~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v  161 (325)
                      ++||+|+|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++...+|++|+||
T Consensus       466 ~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v  544 (694)
T TIGR03375       466 FRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYV  544 (694)
T ss_pred             EEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEE
Confidence            99999999753 34699999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEE
Q 020527          162 GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAIL  239 (325)
Q Consensus       162 ~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~ll  239 (325)
                      ||++.+|++|++|||.++.+ ..+++++.++++.++++++++.+|.|+++.+++  .+||||||||++|||||+++|+++
T Consensus       545 ~Q~~~lf~~TI~eNi~~~~~-~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~il  623 (694)
T TIGR03375       545 PQDPRLFYGTLRDNIALGAP-YADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPIL  623 (694)
T ss_pred             CCChhhhhhhHHHHHhCCCC-CCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence            99999999999999999843 467888999999999999999999999998874  579999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhc
Q 020527          240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK  309 (325)
Q Consensus       240 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~  309 (325)
                      |||||||+||+++++.+.+.+.++.    +++|+|+|||+++.+..||+|++|++|++++.|+++++++.
T Consensus       624 iLDE~Ts~LD~~te~~i~~~l~~~~----~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~  689 (694)
T TIGR03375       624 LLDEPTSAMDNRSEERFKDRLKRWL----AGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA  689 (694)
T ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHh----CCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence            9999999999999999999999885    36899999999999999999999999999999999998754

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.9e-64  Score=489.48  Aligned_cols=308  Identities=35%  Similarity=0.545  Sum_probs=276.4

Q ss_pred             HHHHhc-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccc-cCCcccEEEEE
Q 020527            7 GMSIMI-GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKL-QRLMGHVQFVN   84 (325)
Q Consensus         7 ~~~v~~-g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~   84 (325)
                      ++..+. |++|+...+.+++....++.|++.++..+|...++.++.+.++.+++.+++.......... ......++++|
T Consensus       246 g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~  325 (559)
T COG4988         246 GFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLEN  325 (559)
T ss_pred             HHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCceeeecc
Confidence            444555 8999999998999999999999999999999999999999999999988763321110011 11112355669


Q ss_pred             EEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccC
Q 020527           85 ISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE  164 (325)
Q Consensus        85 v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~  164 (325)
                      +++.|++.  +++++|+||++++|+.++|+|+||||||||+++|+|+.+|++|+|.+||.++.+.+...||++++||+|+
T Consensus       326 l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~  403 (559)
T COG4988         326 LSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQN  403 (559)
T ss_pred             eEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCC
Confidence            99999864  3799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEe
Q 020527          165 PQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLD  242 (325)
Q Consensus       165 ~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~llllD  242 (325)
                      |++|++|++||+.++. ...+++++.++++++++.++++. |.|+++.+++  ..|||||+|||++||||+++++++|+|
T Consensus       404 p~lf~gTireNi~l~~-~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llD  481 (559)
T COG4988         404 PYLFAGTIRENILLAR-PDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLD  481 (559)
T ss_pred             CccccccHHHHhhccC-CcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEec
Confidence            9999999999999985 45778999999999999999999 9999998874  679999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHhhh
Q 020527          243 EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTE  322 (325)
Q Consensus       243 EPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~  322 (325)
                      ||||+||.++++.+.+.|.++.+    ++|+++|||++..+..||+|++|++|++++.|+++++..+++.|++++..|.+
T Consensus       482 EpTA~LD~etE~~i~~~l~~l~~----~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~~q~~  557 (559)
T COG4988         482 EPTAHLDAETEQIILQALQELAK----QKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQQEG  557 (559)
T ss_pred             CCccCCCHhHHHHHHHHHHHHHh----CCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHHHHHhc
Confidence            99999999999999999999975    57999999999999999999999999999999999999999999999998764

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=100.00  E-value=8e-64  Score=515.50  Aligned_cols=313  Identities=40%  Similarity=0.589  Sum_probs=283.0

Q ss_pred             EeeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEE
Q 020527            2 AVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQ   81 (325)
Q Consensus         2 ~~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~   81 (325)
                      ++++|++++..|+||+|.++++..+...+..|+..+...+..++.+..+++|+.++++.+++.... .....+...+.|+
T Consensus       379 il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~-~~~~~~~~~~~i~  457 (694)
T TIGR01846       379 LLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA-GLAALPELRGAIT  457 (694)
T ss_pred             hHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC-CCCCCCCCCCeEE
Confidence            467899999999999999999999999999999999999999999999999999999887653221 1111112234699


Q ss_pred             EEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 020527           82 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV  161 (325)
Q Consensus        82 ~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v  161 (325)
                      ++||+|+|++. .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++...+|++|+||
T Consensus       458 ~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v  536 (694)
T TIGR01846       458 FENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVV  536 (694)
T ss_pred             EEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEE
Confidence            99999999743 24699999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEE
Q 020527          162 GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAIL  239 (325)
Q Consensus       162 ~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~ll  239 (325)
                      ||++.+|++|++||+.++. +..+++++.++++.+++.++++++|.|+++.++.  .+||||||||++|||||+++|++|
T Consensus       537 ~q~~~lf~~ti~eNi~~~~-~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~il  615 (694)
T TIGR01846       537 LQENVLFSRSIRDNIALCN-PGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRIL  615 (694)
T ss_pred             ccCCeehhhhHHHHHhcCC-CCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEE
Confidence            9999999999999999874 3466888999999999999999999999998864  689999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHHH
Q 020527          240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKR  319 (325)
Q Consensus       240 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~  319 (325)
                      |||||||+||+.+++.+.+.|+++.    +++|+|++||+++.+..||+|++|++|++++.|++++++++++.|++++..
T Consensus       616 ilDEpts~LD~~~~~~i~~~l~~~~----~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~~  691 (694)
T TIGR01846       616 IFDEATSALDYESEALIMRNMREIC----RGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYARLWQQ  691 (694)
T ss_pred             EEECCCcCCCHHHHHHHHHHHHHHh----CCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHcCChHHHHHHh
Confidence            9999999999999999999999884    368999999999999889999999999999999999999999999999986


Q ss_pred             hh
Q 020527          320 QT  321 (325)
Q Consensus       320 ~~  321 (325)
                      |.
T Consensus       692 ~~  693 (694)
T TIGR01846       692 QS  693 (694)
T ss_pred             hc
Confidence            53

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=8.5e-64  Score=507.00  Aligned_cols=301  Identities=34%  Similarity=0.489  Sum_probs=273.7

Q ss_pred             HhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEEEEEEEEEC
Q 020527           10 IMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHY   89 (325)
Q Consensus        10 v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y   89 (325)
                      +..|.+|+|.++++..|...+..|+..+...+..+.++..+++|+.++++.++++....   ......+.|+++||+|+|
T Consensus       274 ~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~---~~~~~~~~i~~~~v~f~y  350 (592)
T PRK10790        274 SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGND---DRPLQSGRIDIDNVSFAY  350 (592)
T ss_pred             HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCC---ccCCCCCeEEEEEEEEEe
Confidence            57899999999999999999999999999999999999999999999998764421111   111112359999999999


Q ss_pred             CCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCcc
Q 020527           90 PSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ  169 (325)
Q Consensus        90 ~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~  169 (325)
                      +++  .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++.+.+|++|+|+||+|.+|+
T Consensus       351 ~~~--~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~  428 (592)
T PRK10790        351 RDD--NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLA  428 (592)
T ss_pred             CCC--CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCcccc
Confidence            743  469999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCC
Q 020527          170 MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSA  247 (325)
Q Consensus       170 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~llllDEPts~  247 (325)
                      +|++|||.++.  ..+++++.++++.++++++++++|.|+++.++.  .+||||||||++|||||+++|+|||||||||+
T Consensus       429 ~Ti~~NI~~~~--~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~  506 (592)
T PRK10790        429 DTFLANVTLGR--DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATAN  506 (592)
T ss_pred             chHHHHHHhCC--CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCccc
Confidence            99999999984  467888999999999999999999999998864  57999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHhh
Q 020527          248 LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQT  321 (325)
Q Consensus       248 LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~  321 (325)
                      ||+++++.+.+.++++.+    ++|+|+|||+++.+..||+|++|++|++++.|++++++++++.|+++++.+.
T Consensus       507 LD~~t~~~i~~~l~~~~~----~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~~~y~~l~~~~~  576 (592)
T PRK10790        507 IDSGTEQAIQQALAAVRE----HTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQGRYWQMYQLQL  576 (592)
T ss_pred             CCHHHHHHHHHHHHHHhC----CCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCHHHHHHHHHh
Confidence            999999999999998853    5799999999999999999999999999999999999999999999998654

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=100.00  E-value=2.1e-63  Score=503.68  Aligned_cols=311  Identities=38%  Similarity=0.614  Sum_probs=278.0

Q ss_pred             eeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEEE
Q 020527            3 VLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQF   82 (325)
Q Consensus         3 ~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   82 (325)
                      +++|+|++..|.+|+|.++++..++..+..|+..+...+..+..+..+.+|+.++++.+++..............+.|++
T Consensus       258 ~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~I~~  337 (588)
T PRK13657        258 LVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDLGRVKGAVEF  337 (588)
T ss_pred             HHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCcCCCCCeEEE
Confidence            56789999999999999999999999999999999999999999999999999998875442211111111112235999


Q ss_pred             EEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEc
Q 020527           83 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG  162 (325)
Q Consensus        83 ~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~  162 (325)
                      +||+|+|+++  .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++...+|++|+|+|
T Consensus       338 ~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~  415 (588)
T PRK13657        338 DDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVF  415 (588)
T ss_pred             EEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEe
Confidence            9999999753  36999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEE
Q 020527          163 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILL  240 (325)
Q Consensus       163 Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~lll  240 (325)
                      |+|.+|++|++||+.++. +...++++..+++.+++++++.++|.|+++.++.  .+||||||||++|||||+++|+++|
T Consensus       416 Q~~~lf~~Ti~~Ni~~~~-~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~ili  494 (588)
T PRK13657        416 QDAGLFNRSIEDNIRVGR-PDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILI  494 (588)
T ss_pred             cCcccccccHHHHHhcCC-CCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence            999999999999999974 3456888999999999999999999999998764  5799999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHh
Q 020527          241 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQ  320 (325)
Q Consensus       241 lDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~  320 (325)
                      ||||||+||+.+++.+.+.+.++.    +++|+|+||||++.++.||+|++|++|++++.|++++++..++.|++++..+
T Consensus       495 LDEpts~LD~~t~~~i~~~l~~~~----~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~  570 (588)
T PRK13657        495 LDEATSALDVETEAKVKAALDELM----KGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGRFAALLRAQ  570 (588)
T ss_pred             EeCCccCCCHHHHHHHHHHHHHHh----cCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCCChHHHHHHHh
Confidence            999999999999999999998874    3689999999999998999999999999999999999998888899988754

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=100.00  E-value=2.4e-63  Score=501.62  Aligned_cols=312  Identities=43%  Similarity=0.677  Sum_probs=281.0

Q ss_pred             EeeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEE
Q 020527            2 AVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQ   81 (325)
Q Consensus         2 ~~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~   81 (325)
                      ++++|++++..|.+|+|.++++..++..+..|+..+...+..++++..+.+|+.++++.+++.....  .......+.|+
T Consensus       255 ~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~--~~~~~~~~~i~  332 (571)
T TIGR02203       255 VLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGT--RAIERARGDVE  332 (571)
T ss_pred             HHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC--CCCCCCCCeEE
Confidence            3567899999999999999999999999999999999999999999999999999998765532111  11111234699


Q ss_pred             EEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 020527           82 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV  161 (325)
Q Consensus        82 ~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v  161 (325)
                      ++||+|+|++. +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||.++.+++..++|++|+|+
T Consensus       333 ~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v  411 (571)
T TIGR02203       333 FRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALV  411 (571)
T ss_pred             EEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEE
Confidence            99999999753 34799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEE
Q 020527          162 GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAIL  239 (325)
Q Consensus       162 ~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~ll  239 (325)
                      ||+|.+|++|++|||.++.+...+++++.++++.+++++++.++|.|+++.+++  .+||||||||++||||++++|+++
T Consensus       412 ~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~il  491 (571)
T TIGR02203       412 SQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPIL  491 (571)
T ss_pred             ccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence            999999999999999998533567888999999999999999999999998874  579999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHHH
Q 020527          240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKR  319 (325)
Q Consensus       240 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~  319 (325)
                      |||||||+||+.+++.+.+.|.++.    +++|+|+|||+++.+..||+|++|++|++++.|+++++++.+..|++++..
T Consensus       492 lLDEpts~LD~~~~~~i~~~L~~~~----~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~~~~~~~~~~  567 (571)
T TIGR02203       492 ILDEATSALDNESERLVQAALERLM----QGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNGLYAQLHNM  567 (571)
T ss_pred             EEeCccccCCHHHHHHHHHHHHHHh----CCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999999884    368999999999999899999999999999999999999888889888775


Q ss_pred             h
Q 020527          320 Q  320 (325)
Q Consensus       320 ~  320 (325)
                      +
T Consensus       568 ~  568 (571)
T TIGR02203       568 Q  568 (571)
T ss_pred             h
Confidence            4

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=100.00  E-value=1.2e-63  Score=543.18  Aligned_cols=316  Identities=38%  Similarity=0.598  Sum_probs=278.1

Q ss_pred             EeeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccc-ccccc---ccCCc
Q 020527            2 AVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL-SEGVK---LQRLM   77 (325)
Q Consensus         2 ~~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~-~~~~~---~~~~~   77 (325)
                      ++|+|++++..|.+|+|++++++.++.....++..+...+..++++..+++|++++++.+++.... .....   .....
T Consensus      1084 ~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~ 1163 (1466)
T PTZ00265       1084 AYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIK 1163 (1466)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCC
Confidence            468899999999999999998887765555567788889999999999999999999876532111 11111   11123


Q ss_pred             ccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-----------------------
Q 020527           78 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----------------------  134 (325)
Q Consensus        78 ~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-----------------------  134 (325)
                      +.|+++||+|+|+++++.++|+|+||+|++|+++||+||||||||||+++|+|+|+|                       
T Consensus      1164 g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~ 1243 (1466)
T PTZ00265       1164 GKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQ 1243 (1466)
T ss_pred             ceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccc
Confidence            469999999999864345799999999999999999999999999999999999998                       


Q ss_pred             -------------------------------CCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCC
Q 020527          135 -------------------------------SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD  183 (325)
Q Consensus       135 -------------------------------~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~  183 (325)
                                                     ++|+|++||.++.+++...+|++||||||+|.||++||+|||.+|.+ .
T Consensus      1244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~-~ 1322 (1466)
T PTZ00265       1244 GDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKE-D 1322 (1466)
T ss_pred             cccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCC-C
Confidence                                           69999999999999999999999999999999999999999999853 5


Q ss_pred             CCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 020527          184 VKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLH  261 (325)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~  261 (325)
                      ..++++.++++.+++++++..+|.|++|.+++  .+||||||||++|||||+++|+|||||||||+||+++++.+.+.|.
T Consensus      1323 at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~ 1402 (1466)
T PTZ00265       1323 ATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIV 1402 (1466)
T ss_pred             CCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHH
Confidence            67889999999999999999999999999984  5799999999999999999999999999999999999999999999


Q ss_pred             HhhccCCCCeEEEEEecCchHHHhcCEEEEEeC----CEEE-EEcChHHHhh-cCHHHHHHHHHh
Q 020527          262 ALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD----GRII-EVGNHAELLH-KGRLYAKLVKRQ  320 (325)
Q Consensus       262 ~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~----G~i~-~~g~~~~l~~-~~~~~~~~~~~~  320 (325)
                      ++..  .+++|+|+|||+++.++.||+|++|++    |+++ +.|+++++++ +++.|+++++.|
T Consensus      1403 ~~~~--~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265       1403 DIKD--KADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred             HHhc--cCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHhhc
Confidence            8842  137899999999999999999999999    9955 8999999998 588999999865

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=3.3e-63  Score=500.67  Aligned_cols=308  Identities=31%  Similarity=0.532  Sum_probs=272.2

Q ss_pred             eeehHHHHhcCCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEE
Q 020527            3 VLLGGMSIMIGQVSPEQLTKYVLYCEW-LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQ   81 (325)
Q Consensus         3 ~~~g~~~v~~g~it~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~   81 (325)
                      +++|+++ ..|.+|+|.++++..|... +..|+..+...+..++++..+.+|+.++++.+++...+..... ....+.|+
T Consensus       263 ~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~~~~~~-~~~~~~i~  340 (574)
T PRK11160        263 LWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFPTTSTA-AADQVSLT  340 (574)
T ss_pred             HHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcccCC-CCCCCeEE
Confidence            4667787 4899999999998877544 4467788888899999999999999999988765321111111 11224699


Q ss_pred             EEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 020527           82 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV  161 (325)
Q Consensus        82 ~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v  161 (325)
                      ++||+|+|+++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++...+|++|+|+
T Consensus       341 ~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v  419 (574)
T PRK11160        341 LNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVV  419 (574)
T ss_pred             EEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEE
Confidence            99999999753 24699999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEE
Q 020527          162 GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAIL  239 (325)
Q Consensus       162 ~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~ll  239 (325)
                      ||++.+|++|++||+.++.+ ..+++++.++++.+++++++++ |.|+++.+++  .+||||||||++||||++++|++|
T Consensus       420 ~Q~~~lf~~ti~~Ni~~~~~-~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRialARall~~~~il  497 (574)
T PRK11160        420 SQRVHLFSATLRDNLLLAAP-NASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLL  497 (574)
T ss_pred             cccchhhcccHHHHhhcCCC-ccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence            99999999999999999853 4678889999999999999999 9999999874  579999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHHH
Q 020527          240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKR  319 (325)
Q Consensus       240 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~  319 (325)
                      |||||||+||+.+++.+.+.+.++.    +++|+|+|||+++.+..||+|++|++|++++.|++++++++++.|+++++.
T Consensus       498 ilDE~ts~lD~~t~~~i~~~l~~~~----~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~g~y~~l~~~  573 (574)
T PRK11160        498 LLDEPTEGLDAETERQILELLAEHA----QNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQGRYYQLKQR  573 (574)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHc----CCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhcCcHHHHHHhh
Confidence            9999999999999999999999884    368999999999999889999999999999999999999999999998864

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=9.1e-65  Score=524.79  Aligned_cols=314  Identities=46%  Similarity=0.713  Sum_probs=283.4

Q ss_pred             EeeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcccc-ccccccCCcccE
Q 020527            2 AVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS-EGVKLQRLMGHV   80 (325)
Q Consensus         2 ~~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~i   80 (325)
                      .+|+|+.++..+..+.|+++..+..+..-...+......+..+..+.+++.++++.++..|+..... .........+.|
T Consensus       272 ~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~i  351 (1228)
T KOG0055|consen  272 AFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEI  351 (1228)
T ss_pred             HHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCcccccCCcccccccce
Confidence            4799999999999999998655555444455677788899999999999999999999887643221 111222234579


Q ss_pred             EEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 020527           81 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF  160 (325)
Q Consensus        81 ~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~  160 (325)
                      +++||+|+||.+++.++|+|+||.|++|+.+||||||||||||++++|.|+|.|++|+|++||.|+..++.+++|++||.
T Consensus       352 ef~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~igl  431 (1228)
T KOG0055|consen  352 EFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGL  431 (1228)
T ss_pred             EEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCe
Confidence            99999999999877789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCE
Q 020527          161 VGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAI  238 (325)
Q Consensus       161 v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~l  238 (325)
                      |+|+|.||..||+|||.||. ++.+.+++.++.+.+...+++..+|.|+++..++  .+|||||||||||||||+++|+|
T Consensus       432 V~QePvlF~~tI~eNI~~G~-~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~I  510 (1228)
T KOG0055|consen  432 VSQEPVLFATTIRENIRYGK-PDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKI  510 (1228)
T ss_pred             eeechhhhcccHHHHHhcCC-CcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCE
Confidence            99999999999999999994 4678899999999999999999999999999985  47999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHH
Q 020527          239 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK  318 (325)
Q Consensus       239 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~  318 (325)
                      ||||||||+||+++++.+.+.|++..    .|+|.|+|+|+++.++.+|+|++|++|+|+|.|+|+|++..++.|.++++
T Consensus       511 LLLDEaTSaLD~~se~~Vq~ALd~~~----~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~G~Y~~lv~  586 (1228)
T KOG0055|consen  511 LLLDEATSALDAESERVVQEALDKAS----KGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALGGIYSSLVR  586 (1228)
T ss_pred             EEecCcccccCHHHHHHHHHHHHHhh----cCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHhccchHHHHHH
Confidence            99999999999999999999999885    48899999999999999999999999999999999999999999999998


Q ss_pred             Hh
Q 020527          319 RQ  320 (325)
Q Consensus       319 ~~  320 (325)
                      .|
T Consensus       587 ~Q  588 (1228)
T KOG0055|consen  587 LQ  588 (1228)
T ss_pred             HH
Confidence            76

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=9.5e-63  Score=496.99  Aligned_cols=311  Identities=33%  Similarity=0.527  Sum_probs=278.9

Q ss_pred             eeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEEE
Q 020527            3 VLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQF   82 (325)
Q Consensus         3 ~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   82 (325)
                      +++|+|++..|.+|+|.++++..|...+..|+..+...+..+..+..+.+|+.++++.+++.....  ...+...+.|++
T Consensus       239 l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~--~~~~~~~~~I~~  316 (569)
T PRK10789        239 IGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS--EPVPEGRGELDV  316 (569)
T ss_pred             HHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC--CCCCCCCCcEEE
Confidence            467889999999999999999999999999999999999999999999999999998765432111  111112235999


Q ss_pred             EEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEc
Q 020527           83 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG  162 (325)
Q Consensus        83 ~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~  162 (325)
                      +|++|+|+.. +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+||+++.+.+...+|++++|+|
T Consensus       317 ~~v~~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~  395 (569)
T PRK10789        317 NIRQFTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVS  395 (569)
T ss_pred             EEEEEECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEc
Confidence            9999999753 246999999999999999999999999999999999999999999999999999888888999999999


Q ss_pred             cCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEE
Q 020527          163 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILL  240 (325)
Q Consensus       163 Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~lll  240 (325)
                      |++.+|++|++||+.++.+ ...++++..+++.+++++++.++|.|+++.++.  .+||||||||++|||||+++|+++|
T Consensus       396 q~~~lf~~ti~~Ni~~~~~-~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~ill  474 (569)
T PRK10789        396 QTPFLFSDTVANNIALGRP-DATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILI  474 (569)
T ss_pred             cCCeeccccHHHHHhcCCC-CCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence            9999999999999999743 456778888999999999999999999998764  5799999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHh
Q 020527          241 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQ  320 (325)
Q Consensus       241 lDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~  320 (325)
                      ||||||+||+.+++.+.+.|+++.    +++|+|++||+++.+..||+|++|++|++++.|++++++++++.|++++..|
T Consensus       475 lDEpts~LD~~~~~~i~~~l~~~~----~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~  550 (569)
T PRK10789        475 LDDALSAVDGRTEHQILHNLRQWG----EGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQ  550 (569)
T ss_pred             EECccccCCHHHHHHHHHHHHHHh----CCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHHh
Confidence            999999999999999999998874    3789999999999998899999999999999999999999888999999865


Q ss_pred             h
Q 020527          321 T  321 (325)
Q Consensus       321 ~  321 (325)
                      .
T Consensus       551 ~  551 (569)
T PRK10789        551 Q  551 (569)
T ss_pred             h
Confidence            3

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=100.00  E-value=1.4e-62  Score=496.64  Aligned_cols=313  Identities=44%  Similarity=0.715  Sum_probs=278.7

Q ss_pred             eeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcccccccc-ccCCcccEE
Q 020527            3 VLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVK-LQRLMGHVQ   81 (325)
Q Consensus         3 ~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~i~   81 (325)
                      +++|++++..|.+|+|.++++..+...+..|+..+...+..+..+..+++|+.++++.+++......... ..+....|+
T Consensus       260 ~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~  339 (576)
T TIGR02204       260 LWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIE  339 (576)
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCccCCcCCCceEE
Confidence            4568999999999999999999999999999999999999999999999999999987654211111111 111223699


Q ss_pred             EEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 020527           82 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV  161 (325)
Q Consensus        82 ~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v  161 (325)
                      ++||+|+|+++.++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++...+|++|+|+
T Consensus       340 ~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~  419 (576)
T TIGR02204       340 FEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALV  419 (576)
T ss_pred             EEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEE
Confidence            99999999753224699999999999999999999999999999999999999999999999999999988999999999


Q ss_pred             ccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEE
Q 020527          162 GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAIL  239 (325)
Q Consensus       162 ~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~ll  239 (325)
                      ||+|.+|++|++|||.++.+ ...++++.++++.+++.++++++|.|+++.+++  .+||||||||++||||++++|+++
T Consensus       420 ~Q~~~lf~~Ti~~Ni~~~~~-~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~il  498 (576)
T TIGR02204       420 PQDPVLFAASVMENIRYGRP-DATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPIL  498 (576)
T ss_pred             ccCCccccccHHHHHhcCCC-CCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeE
Confidence            99999999999999999753 456788999999999999999999999988764  579999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHHH
Q 020527          240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKR  319 (325)
Q Consensus       240 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~  319 (325)
                      |||||||+||+.+++.+.+.++++.    +++|+|+|||+++.+..||+|++|++|++++.|++++++.+...|++++..
T Consensus       499 ilDEpts~lD~~~~~~i~~~l~~~~----~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~~~~~~~l~~~  574 (576)
T TIGR02204       499 LLDEATSALDAESEQLVQQALETLM----KGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGGLYARLARL  574 (576)
T ss_pred             EEeCcccccCHHHHHHHHHHHHHHh----CCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHcCChHHHHHhh
Confidence            9999999999999999999999884    368999999999999889999999999999999999999988899998876


Q ss_pred             h
Q 020527          320 Q  320 (325)
Q Consensus       320 ~  320 (325)
                      |
T Consensus       575 ~  575 (576)
T TIGR02204       575 Q  575 (576)
T ss_pred             c
Confidence            5

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=6.9e-64  Score=432.14  Aligned_cols=217  Identities=35%  Similarity=0.529  Sum_probs=190.8

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCC-CHHHHhcc
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL-DIRWLREK  157 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~-~~~~~r~~  157 (325)
                      .|+++||+|+|++.   .+|++||++|++||+++|+||||||||||||||++|.+|++|+|.++|.++... +...+|++
T Consensus         2 mi~i~~l~K~fg~~---~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~   78 (240)
T COG1126           2 MIEIKNLSKSFGDK---EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK   78 (240)
T ss_pred             eEEEEeeeEEeCCe---EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence            48999999999864   699999999999999999999999999999999999999999999999877432 56778999


Q ss_pred             eEEEccCCcCc-cccHHHHHhcCCC--CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527          158 IGFVGQEPQLL-QMDIKSNIMYGCP--KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR  230 (325)
Q Consensus       158 i~~v~Q~~~l~-~~tv~enl~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr  230 (325)
                      +|+|||+++|| .+||.||++++..  ....    .+...+.++++++.+..+.+|         .+|||||||||||||
T Consensus        79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP---------~qLSGGQqQRVAIAR  149 (240)
T COG1126          79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP---------AQLSGGQQQRVAIAR  149 (240)
T ss_pred             cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc---------cccCcHHHHHHHHHH
Confidence            99999999999 5899999988631  1112    222344566666666666666         789999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhc
Q 020527          231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK  309 (325)
Q Consensus       231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~  309 (325)
                      ||+.+|+++|+|||||+|||+...++++.++++++   .|.|.|+|||++.+++. ||||++|++|++++.|+|++++.+
T Consensus       150 ALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~---eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~  226 (240)
T COG1126         150 ALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE---EGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN  226 (240)
T ss_pred             HHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH---cCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcC
Confidence            99999999999999999999999999999999986   48999999999999986 999999999999999999999976


Q ss_pred             C
Q 020527          310 G  310 (325)
Q Consensus       310 ~  310 (325)
                      .
T Consensus       227 p  227 (240)
T COG1126         227 P  227 (240)
T ss_pred             C
Confidence            3

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=100.00  E-value=4.6e-62  Score=493.24  Aligned_cols=312  Identities=37%  Similarity=0.596  Sum_probs=277.2

Q ss_pred             EeeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEE
Q 020527            2 AVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQ   81 (325)
Q Consensus         2 ~~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~   81 (325)
                      ++++|++++..|++|+|.++++..+...+..|+..+...+..+..+..+.+|+.++++.+++..............+.++
T Consensus       257 v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~  336 (585)
T TIGR01192       257 ILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPELPNVKGAVE  336 (585)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCCCCCCCCCeEE
Confidence            35679999999999999999999999999999999999999999999999999999987654221111111111223599


Q ss_pred             EEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 020527           82 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV  161 (325)
Q Consensus        82 ~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v  161 (325)
                      ++||+|+|+++  .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++|+
T Consensus       337 ~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v  414 (585)
T TIGR01192       337 FRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATV  414 (585)
T ss_pred             EEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEE
Confidence            99999999753  3589999999999999999999999999999999999999999999999999988888899999999


Q ss_pred             ccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEE
Q 020527          162 GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAIL  239 (325)
Q Consensus       162 ~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~ll  239 (325)
                      ||++.+|++|++||+.++.+ ...++++.++++.+++++++.++|.|+++..+.  .+||||||||++|||||+++|++|
T Consensus       415 ~q~~~lf~~ti~~Ni~~~~~-~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~il  493 (585)
T TIGR01192       415 FQDAGLFNRSIRENIRLGRE-GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPIL  493 (585)
T ss_pred             ccCCccCcccHHHHHhcCCC-CCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence            99999999999999999743 456778888899999999999999999987763  679999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHHH
Q 020527          240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKR  319 (325)
Q Consensus       240 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~  319 (325)
                      |||||||+||+.+++.+.+.|.++.    +++|+|+|||+++.+..||+|++|++|++++.|++++++++++.|++++..
T Consensus       494 ilDEpts~LD~~~~~~i~~~l~~~~----~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~  569 (585)
T TIGR01192       494 VLDEATSALDVETEARVKNAIDALR----KNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGRFYKLLRR  569 (585)
T ss_pred             EEECCccCCCHHHHHHHHHHHHHHh----CCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCCChHHHHHHh
Confidence            9999999999999999999998874    378999999999999889999999999999999999999999999999976


Q ss_pred             h
Q 020527          320 Q  320 (325)
Q Consensus       320 ~  320 (325)
                      +
T Consensus       570 ~  570 (585)
T TIGR01192       570 S  570 (585)
T ss_pred             C
Confidence            5

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.9e-62  Score=469.85  Aligned_cols=308  Identities=38%  Similarity=0.570  Sum_probs=276.0

Q ss_pred             ehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEEEEE
Q 020527            5 LGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVN   84 (325)
Q Consensus         5 ~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   84 (325)
                      +|..-+..|.||+|+++.+..+..++..|+..++..+..+.++......++.+.+...+..+.  ..+.....+.|+++|
T Consensus       279 l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~--~~~i~~~~~~I~F~d  356 (591)
T KOG0057|consen  279 LGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEA--ALPIELFGGSIEFDD  356 (591)
T ss_pred             HHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhc--cCCcccCCCcEEEEe
Confidence            455557788999999999999999999999999999999999999888888765544332211  011122334699999


Q ss_pred             EEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccC
Q 020527           85 ISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE  164 (325)
Q Consensus        85 v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~  164 (325)
                      |+++|+.+  +++|+++||+|++||.+||+|+|||||||++|+|.++++ ++|+|.+||+++++.+...+|+.|||||||
T Consensus       357 V~f~y~~k--~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd  433 (591)
T KOG0057|consen  357 VHFSYGPK--RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQD  433 (591)
T ss_pred             eEEEeCCC--CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCc
Confidence            99999864  469999999999999999999999999999999999999 999999999999999999999999999999


Q ss_pred             CcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEe
Q 020527          165 PQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLD  242 (325)
Q Consensus       165 ~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~llllD  242 (325)
                      ..||+.||.+||.+|. ....++++.++++++++++.+.++|.||.|.+++  ..|||||||||+||||++++|+|+++|
T Consensus       434 ~~LFndTIl~NI~YGn-~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~D  512 (591)
T KOG0057|consen  434 SVLFNDTILYNIKYGN-PSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLD  512 (591)
T ss_pred             ccccchhHHHHhhcCC-CCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEec
Confidence            9999999999999995 4678899999999999999999999999999985  579999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHhhh
Q 020527          243 EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTE  322 (325)
Q Consensus       243 EPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~  322 (325)
                      ||||+||.++++.+++.+.+..    .++|+|+|.||++.+..||+|+++++|++.+.|++++++...+.|.++|..|..
T Consensus       513 EaTS~LD~~TE~~i~~~i~~~~----~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~~~w~~~~~  588 (591)
T KOG0057|consen  513 EATSALDSETEREILDMIMDVM----SGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWTTQTS  588 (591)
T ss_pred             CcccccchhhHHHHHHHHHHhc----CCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHHHHhccccc
Confidence            9999999999999999998852    588999999999999999999999999999999999999988899999987643

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=100.00  E-value=4.7e-61  Score=482.47  Aligned_cols=298  Identities=33%  Similarity=0.510  Sum_probs=266.6

Q ss_pred             eeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEEE
Q 020527            3 VLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQF   82 (325)
Q Consensus         3 ~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   82 (325)
                      +++|++++..|.+|+|.++++..++..+..|+..+...+..++.+..+.+|+.++++.+++....   .......+.+++
T Consensus       243 ~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~~~~~~~i~~  319 (544)
T TIGR01842       243 LGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA---MPLPEPEGHLSV  319 (544)
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC---CCCCCCCCeEEE
Confidence            56799999999999999999999999999999999999999999999999999999876543211   111112235999


Q ss_pred             EEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEc
Q 020527           83 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG  162 (325)
Q Consensus        83 ~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~  162 (325)
                      +|++|+|++. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++|+|
T Consensus       320 ~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~  398 (544)
T TIGR01842       320 ENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLP  398 (544)
T ss_pred             EEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEec
Confidence            9999999753 246999999999999999999999999999999999999999999999999999888888999999999


Q ss_pred             cCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEE
Q 020527          163 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILL  240 (325)
Q Consensus       163 Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~lll  240 (325)
                      |++.+|++|++||+.++. ...+++++.++++.++++++++++|.|+++.++.  .+||||||||++||||++++|+++|
T Consensus       399 q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ili  477 (544)
T TIGR01842       399 QDVELFPGTVAENIARFG-ENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVV  477 (544)
T ss_pred             CCcccccccHHHHHhccC-CCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence            999999999999998753 3356778888999999999999999999988764  6899999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhh
Q 020527          241 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLH  308 (325)
Q Consensus       241 lDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~  308 (325)
                      ||||||+||+.+++.+.+.+.++..   +++|+|++||+++.+..||+|++|++|++++.|+++++.+
T Consensus       478 lDEpts~LD~~~~~~i~~~l~~~~~---~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~  542 (544)
T TIGR01842       478 LDEPNSNLDEEGEQALANAIKALKA---RGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA  542 (544)
T ss_pred             EeCCccccCHHHHHHHHHHHHHHhh---CCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence            9999999999999999999998853   3689999999999888899999999999999999998754

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.2e-62  Score=465.09  Aligned_cols=300  Identities=32%  Similarity=0.493  Sum_probs=265.6

Q ss_pred             cCCcCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEEEEEEEEECC
Q 020527           12 IGQVSPEQLTKYVLYCEWLIYATWRMV-DNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYP   90 (325)
Q Consensus        12 ~g~it~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~   90 (325)
                      .|..+....+++++.+...+.++..+. ..+.+..+...++.|+.++.+.+++..++.... .... ..++++||+|+|+
T Consensus       270 ~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~~~~~-~~~~-~~l~~~~vsF~y~  347 (573)
T COG4987         270 AGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPDEQT-ATTG-QALELRNVSFTYP  347 (573)
T ss_pred             CCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCCcccc-CCcc-ceeeeccceeecC
Confidence            566665555556665556666666666 666788999999999999999988765441111 1111 1599999999998


Q ss_pred             CCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccc
Q 020527           91 SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQM  170 (325)
Q Consensus        91 ~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~  170 (325)
                      ++ ..++|+|+||++++||.+||+|+||||||||+++|+|.++|++|+|.++|.++..++.+.+|+.+++++|.+++|+.
T Consensus       348 ~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~  426 (573)
T COG4987         348 GQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSG  426 (573)
T ss_pred             CC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHH
Confidence            75 45799999999999999999999999999999999999999999999999999999988899999999999999999


Q ss_pred             cHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCC
Q 020527          171 DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSAL  248 (325)
Q Consensus       171 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~llllDEPts~L  248 (325)
                      |++||+.++. ++.+++++++++++++++++++..|.|+++++++  ..||||||||++|||+|++|.+++||||||.||
T Consensus       427 Tlr~NL~lA~-~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegL  505 (573)
T COG4987         427 TLRDNLRLAN-PDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGL  505 (573)
T ss_pred             HHHHHHhhcC-CCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccC
Confidence            9999999984 4688999999999999999999999999999984  579999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHHH
Q 020527          249 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKR  319 (325)
Q Consensus       249 D~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~  319 (325)
                      |+.+++++++.+.+..    +|+|+|+|||++..++.||||++|++|+++++|++.+++.+++.|+++++.
T Consensus       506 D~~TE~~vL~ll~~~~----~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~~g~~~~l~q~  572 (573)
T COG4987         506 DPITERQVLALLFEHA----EGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNGRYKRLYQL  572 (573)
T ss_pred             ChhhHHHHHHHHHHHh----cCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhccccHHHHHhcc
Confidence            9999999999998775    488999999999999999999999999999999999999999999998863

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.1e-62  Score=462.31  Aligned_cols=311  Identities=38%  Similarity=0.569  Sum_probs=286.1

Q ss_pred             eehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEEEE
Q 020527            4 LLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFV   83 (325)
Q Consensus         4 ~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   83 (325)
                      .+++|+|..+..|+|+++.|..|..++..|+.-++..+..++++....++++++++.+++..+.+...+.....+.|+++
T Consensus       462 ll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G~i~fs  541 (790)
T KOG0056|consen  462 LLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFS  541 (790)
T ss_pred             heeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccCCeEEEE
Confidence            45678888999999999999999999999999999999999999999999999999888755544333333345679999


Q ss_pred             EEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEcc
Q 020527           84 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQ  163 (325)
Q Consensus        84 ~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q  163 (325)
                      ||+|.|...  +++|+||||++.||+.+|++||||+||||++|+|.++++.++|.|.+||+|+.......+|++||.|||
T Consensus       542 nvtF~Y~p~--k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQ  619 (790)
T KOG0056|consen  542 NVTFAYDPG--KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQ  619 (790)
T ss_pred             EeEEecCCC--CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccC
Confidence            999999753  689999999999999999999999999999999999999999999999999998888899999999999


Q ss_pred             CCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEE
Q 020527          164 EPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLL  241 (325)
Q Consensus       164 ~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~llll  241 (325)
                      |..||+.|+..||.|+. +...++++.++.+.+++++.+-.+|.|+.+.+++  -.|||||||||+|||+++++|.+++|
T Consensus       620 DtvLFNdTI~yNIryak-~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlL  698 (790)
T KOG0056|consen  620 DTVLFNDTILYNIRYAK-PSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILL  698 (790)
T ss_pred             cceeecceeeeheeecC-CCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEE
Confidence            99999999999999995 4677889999999999999999999999999986  46999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhc-CHHHHHHHHHh
Q 020527          242 DEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK-GRLYAKLVKRQ  320 (325)
Q Consensus       242 DEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~  320 (325)
                      ||+||+||..+++.|...|.+++    .++|.|+|.|+++.+-.||.|+++++|+|+|.|.+++++.. .+.|.+||+.|
T Consensus       699 DEATSALDT~tER~IQaaL~rlc----a~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~q  774 (790)
T KOG0056|consen  699 DEATSALDTNTERAIQAALARLC----ANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQAQ  774 (790)
T ss_pred             cchhhhcCCccHHHHHHHHHHHh----cCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHHHH
Confidence            99999999999999999999996    47799999999999999999999999999999999999986 78999999765


Q ss_pred             h
Q 020527          321 T  321 (325)
Q Consensus       321 ~  321 (325)
                      +
T Consensus       775 q  775 (790)
T KOG0056|consen  775 Q  775 (790)
T ss_pred             H
Confidence            4

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=100.00  E-value=2.7e-60  Score=520.87  Aligned_cols=308  Identities=29%  Similarity=0.426  Sum_probs=275.6

Q ss_pred             ehHHHHh-cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccc-cc--cccccCCcccE
Q 020527            5 LGGMSIM-IGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL-SE--GVKLQRLMGHV   80 (325)
Q Consensus         5 ~g~~~v~-~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~-~~--~~~~~~~~~~i   80 (325)
                      ++++.+. .|.+++|.+.+++.|...+..|+..++..+..+..+..+++|+.++++.+++.... ..  ....++..+.|
T Consensus      1206 ~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I 1285 (1522)
T TIGR00957      1206 AALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRV 1285 (1522)
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcE
Confidence            4455554 58899999999999999999999999999999999999999999999877653211 11  11112344579


Q ss_pred             EEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 020527           81 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF  160 (325)
Q Consensus        81 ~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~  160 (325)
                      +++||+++|+.+ ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+.+++...+|++|++
T Consensus      1286 ~f~nVsf~Y~~~-~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~i 1364 (1522)
T TIGR00957      1286 EFRNYCLRYRED-LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITI 1364 (1522)
T ss_pred             EEEEEEEEeCCC-CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeE
Confidence            999999999754 2469999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCE
Q 020527          161 VGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAI  238 (325)
Q Consensus       161 v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~l  238 (325)
                      |||+|.+|++||+|||...  ...+++++.++++.+++++++.++|.|+++.+++  .+||||||||+||||||+++|+|
T Consensus      1365 VpQdp~LF~gTIr~NLdp~--~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1442 (1522)
T TIGR00957      1365 IPQDPVLFSGSLRMNLDPF--SQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKI 1442 (1522)
T ss_pred             ECCCCcccCccHHHHcCcc--cCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCE
Confidence            9999999999999999732  1466888999999999999999999999998875  68999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHH
Q 020527          239 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK  318 (325)
Q Consensus       239 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~  318 (325)
                      ||||||||+||+++++.+.+.|++..    +++|+|+|+|+++.+..||||++|++|+|++.|+|++++++++.|+++++
T Consensus      1443 LiLDEaTSalD~~Te~~Iq~~l~~~~----~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~~~~f~~l~~ 1518 (1522)
T TIGR00957      1443 LVLDEATAAVDLETDNLIQSTIRTQF----EDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQRGIFYSMAK 1518 (1522)
T ss_pred             EEEECCcccCCHHHHHHHHHHHHHHc----CCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHH
Confidence            99999999999999999999998874    46899999999999999999999999999999999999998899999987


Q ss_pred             H
Q 020527          319 R  319 (325)
Q Consensus       319 ~  319 (325)
                      +
T Consensus      1519 ~ 1519 (1522)
T TIGR00957      1519 D 1519 (1522)
T ss_pred             H
Confidence            6

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=100.00  E-value=2.4e-60  Score=475.85  Aligned_cols=270  Identities=31%  Similarity=0.454  Sum_probs=241.4

Q ss_pred             eeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccc--cccccCCcccE
Q 020527            3 VLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSE--GVKLQRLMGHV   80 (325)
Q Consensus         3 ~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~i   80 (325)
                      +++|++++..|.+|+|.++++..+...+..|+..+...+..++.+..+.+|+.++++.+++......  .....+..+.|
T Consensus       256 ~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I  335 (529)
T TIGR02868       256 LWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPAAGALGLGKPTL  335 (529)
T ss_pred             HHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCcccCCCCceE
Confidence            4678899999999999999999999999999999999999999999999999999987664221111  10111122359


Q ss_pred             EEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 020527           81 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF  160 (325)
Q Consensus        81 ~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~  160 (325)
                      +++||+|+|+++  +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.++ ..++|++|+|
T Consensus       336 ~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~  412 (529)
T TIGR02868       336 ELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISV  412 (529)
T ss_pred             EEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEE
Confidence            999999999753  3699999999999999999999999999999999999999999999999999999 9999999999


Q ss_pred             EccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCE
Q 020527          161 VGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAI  238 (325)
Q Consensus       161 v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~l  238 (325)
                      |||+|.+|++|++|||.++. +..+++++.++++.+++++++.++|.|+++.+++  .+||||||||++|||||+++|+|
T Consensus       413 V~Q~~~lF~~TI~eNI~~g~-~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~i  491 (529)
T TIGR02868       413 FAQDAHLFDTTVRDNLRLGR-PDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPI  491 (529)
T ss_pred             EccCcccccccHHHHHhccC-CCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCE
Confidence            99999999999999999984 3567888999999999999999999999999874  57999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCc
Q 020527          239 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL  280 (325)
Q Consensus       239 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~  280 (325)
                      ||||||||+||+++++.+.+.+.++.    +++|+|+|||++
T Consensus       492 liLDE~TSaLD~~te~~I~~~l~~~~----~~~TvIiItHrl  529 (529)
T TIGR02868       492 LLLDEPTEHLDAGTESELLEDLLAAL----SGKTVVVITHHL  529 (529)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHhc----CCCEEEEEecCC
Confidence            99999999999999999999998773    478999999985

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.4e-61  Score=433.54  Aligned_cols=221  Identities=35%  Similarity=0.540  Sum_probs=195.3

Q ss_pred             cEEEEEEEEECCCC--CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCH---HH
Q 020527           79 HVQFVNISFHYPSR--PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI---RW  153 (325)
Q Consensus        79 ~i~~~~v~~~y~~~--~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~---~~  153 (325)
                      +|++++|+|.|+.+  ....+|+||||+|++||++||+|+||||||||+|++.+|..|++|+|.++|+++..++.   ..
T Consensus         1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~   80 (339)
T COG1135           1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ   80 (339)
T ss_pred             CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence            38999999999762  12469999999999999999999999999999999999999999999999999887764   45


Q ss_pred             HhcceEEEccCCcCc-cccHHHHHhcCCCC-----CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 020527          154 LREKIGFVGQEPQLL-QMDIKSNIMYGCPK-----DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA  227 (325)
Q Consensus       154 ~r~~i~~v~Q~~~l~-~~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~  227 (325)
                      .|++|||+||+++|+ +.||++|++|+..-     .....++.+.++.+++.+..+++|         .+|||||||||+
T Consensus        81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP---------~qLSGGQKQRVa  151 (339)
T COG1135          81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP---------AQLSGGQKQRVA  151 (339)
T ss_pred             HHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc---------hhcCcchhhHHH
Confidence            688999999999999 58999999997421     112344556667777776666666         789999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHH
Q 020527          228 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL  306 (325)
Q Consensus       228 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l  306 (325)
                      |||||+.+|+|||.|||||+|||++.+.|+++|+++.++  .|.||++|||.|+.++. ||||.+|++|++++.|+..++
T Consensus       152 IARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~--lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~v  229 (339)
T COG1135         152 IARALANNPKILLCDEATSALDPETTQSILELLKDINRE--LGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV  229 (339)
T ss_pred             HHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHH--cCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHh
Confidence            999999999999999999999999999999999999875  69999999999999986 999999999999999999999


Q ss_pred             hhcC
Q 020527          307 LHKG  310 (325)
Q Consensus       307 ~~~~  310 (325)
                      +.++
T Consensus       230 F~~P  233 (339)
T COG1135         230 FANP  233 (339)
T ss_pred             hcCc
Confidence            8764

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=100.00  E-value=8.5e-60  Score=447.85  Aligned_cols=300  Identities=33%  Similarity=0.515  Sum_probs=273.7

Q ss_pred             EeeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEE
Q 020527            2 AVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQ   81 (325)
Q Consensus         2 ~~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~   81 (325)
                      ++.+|+|+|++|++|.|.++|-....+....|+...+..|..+..+..+++|+.+++...|.....   .+.+...+.+.
T Consensus       260 iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~---m~LP~P~g~L~  336 (580)
T COG4618         260 VLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAER---MPLPAPQGALS  336 (580)
T ss_pred             HHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCC---CCCCCCCceee
Confidence            456899999999999999999988999999999999999999999999999999999987764321   22233345799


Q ss_pred             EEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 020527           82 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV  161 (325)
Q Consensus        82 ~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v  161 (325)
                      ++++++.-++. ++++++++||++.+||.++||||||||||||.|+|.|..+|.+|.|++||-++.+++.+++-++|||+
T Consensus       337 Ve~l~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYL  415 (580)
T COG4618         337 VERLTAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYL  415 (580)
T ss_pred             EeeeeecCCCC-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcC
Confidence            99999976654 47899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEE
Q 020527          162 GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAIL  239 (325)
Q Consensus       162 ~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~ll  239 (325)
                      ||+..||++||.|||+-. ..+.+.+.+.++.+.+++++++-++|.||+|.+++  ..||||||||++|||||..+|.++
T Consensus       416 PQdVeLF~GTIaeNIaRf-~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lv  494 (580)
T COG4618         416 PQDVELFDGTIAENIARF-GEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLV  494 (580)
T ss_pred             cccceecCCcHHHHHHhc-cccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEE
Confidence            999999999999999632 23566788999999999999999999999999985  579999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhc
Q 020527          240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK  309 (325)
Q Consensus       240 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~  309 (325)
                      +||||-|+||.+.+..+.+.|.+.++   +|.|+|+|||+++.+..+|+|++|++|++..+|+.++++.+
T Consensus       495 VLDEPNsNLD~~GE~AL~~Ai~~~k~---rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~  561 (580)
T COG4618         495 VLDEPNSNLDSEGEAALAAAILAAKA---RGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK  561 (580)
T ss_pred             EecCCCCCcchhHHHHHHHHHHHHHH---cCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence            99999999999999999999999975   48899999999999999999999999999999999998753

>PLN03232 ABC transporter C family member; Provisional

Probab=100.00  E-value=5.6e-59  Score=509.81  Aligned_cols=293  Identities=27%  Similarity=0.419  Sum_probs=260.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccc-cc--cccccCCcccEEEEEEEEECCCCCCCCce
Q 020527           22 KYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL-SE--GVKLQRLMGHVQFVNISFHYPSRPTVPIL   98 (325)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~-~~--~~~~~~~~~~i~~~~v~~~y~~~~~~~iL   98 (325)
                      .++.|...+..++..+...+..+..+..+++|+.++++.+++.... ..  ..+.++..+.|+++||+|+|+.. .+++|
T Consensus      1174 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL 1252 (1495)
T PLN03232       1174 LLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVL 1252 (1495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCccc
Confidence            3566777788888889999999999999999999999887664321 11  11112334569999999999643 24699


Q ss_pred             eeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhc
Q 020527           99 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMY  178 (325)
Q Consensus        99 ~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~  178 (325)
                      +|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+.+++...+|++|+||||+|.+|++|++|||.+
T Consensus      1253 ~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~ 1332 (1495)
T PLN03232       1253 HGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDP 1332 (1495)
T ss_pred             ccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHH
Q 020527          179 GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV  256 (325)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i  256 (325)
                      +.  ..+++++.++++.+++.++++.+|.|+++.+++  .+||||||||++|||||+++|+|||||||||+||+++++.+
T Consensus      1333 ~~--~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~I 1410 (1495)
T PLN03232       1333 FS--EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLI 1410 (1495)
T ss_pred             CC--CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHH
Confidence            63  467888999999999999999999999998874  58999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcC-HHHHHHHHHhh
Q 020527          257 KGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG-RLYAKLVKRQT  321 (325)
Q Consensus       257 ~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~-~~~~~~~~~~~  321 (325)
                      .+.|++..    +++|+|+|+|+++.+..||||++|++|++++.|+|+++++++ +.|+++++.+.
T Consensus      1411 q~~L~~~~----~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~ 1472 (1495)
T PLN03232       1411 QRTIREEF----KSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTG 1472 (1495)
T ss_pred             HHHHHHHc----CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence            99998874    368999999999999999999999999999999999999876 48999987643

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=100.00  E-value=4.7e-59  Score=466.57  Aligned_cols=281  Identities=36%  Similarity=0.551  Sum_probs=250.4

Q ss_pred             eehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEEEE
Q 020527            4 LLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFV   83 (325)
Q Consensus         4 ~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   83 (325)
                      +++++.++.|.+|+|.++++..+...+..|+..+...+..++.+..+.+|+.++++.+++..... ... ....+.|+++
T Consensus       247 ~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~-~~~-~~~~~~i~~~  324 (529)
T TIGR02857       247 VYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKA-PVT-AAPAPSLEFS  324 (529)
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc-CCC-CCCCCeEEEE
Confidence            45677888999999999999999999999999999999999999999999999998654321111 111 1112369999


Q ss_pred             EEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEcc
Q 020527           84 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQ  163 (325)
Q Consensus        84 ~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q  163 (325)
                      ||+|+|+++ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+||.++.+++..++|++|+||||
T Consensus       325 ~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q  403 (529)
T TIGR02857       325 GLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQ  403 (529)
T ss_pred             EEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcC
Confidence            999999764 2469999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEE
Q 020527          164 EPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLL  241 (325)
Q Consensus       164 ~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~llll  241 (325)
                      ++.+|++|++||+.++.+ ...++++.++++.++++++++++|.|+++.+++  .+||||||||++||||++++|+++||
T Consensus       404 ~~~lf~~ti~~Ni~~~~~-~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ilil  482 (529)
T TIGR02857       404 HPFLFAGTIAENIRLARP-DASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLL  482 (529)
T ss_pred             CCcccCcCHHHHHhccCC-CCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            999999999999999743 456788999999999999999999999998874  67999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEE
Q 020527          242 DEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI  292 (325)
Q Consensus       242 DEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l  292 (325)
                      |||||+||+.+++.+.+.+.++.    +++|+|+|||+++.++.||+|++|
T Consensus       483 DE~ts~lD~~~~~~i~~~l~~~~----~~~t~i~itH~~~~~~~~d~i~~l  529 (529)
T TIGR02857       483 DEPTAHLDAETEALVTEALRALA----QGRTVLLVTHRLALAERADRIVVL  529 (529)
T ss_pred             eCcccccCHHHHHHHHHHHHHhc----CCCEEEEEecCHHHHHhCCEEEeC
Confidence            99999999999999999999874    378999999999999889999875

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>PLN03130 ABC transporter C family member; Provisional

Probab=100.00  E-value=1.2e-58  Score=508.24  Aligned_cols=295  Identities=29%  Similarity=0.437  Sum_probs=256.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccc-cc--cccccCCcccEEEEEEEEECCCC
Q 020527           16 SPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL-SE--GVKLQRLMGHVQFVNISFHYPSR   92 (325)
Q Consensus        16 t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~-~~--~~~~~~~~~~i~~~~v~~~y~~~   92 (325)
                      ++|.+++   |...+..++..+...+..+..+..+++|+.++++.+++.... ..  ....++..+.|+++||+|+|++.
T Consensus      1174 ~~G~~ls---~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~ 1250 (1622)
T PLN03130       1174 TMGLLLS---YALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE 1250 (1622)
T ss_pred             HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC
Confidence            4444444   444555556666667778899999999999999887664211 11  11112334579999999999643


Q ss_pred             CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccH
Q 020527           93 PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDI  172 (325)
Q Consensus        93 ~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv  172 (325)
                       .+++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+.+++..++|++|++|||+|.+|++||
T Consensus      1251 -~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTI 1329 (1622)
T PLN03130       1251 -LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTV 1329 (1622)
T ss_pred             -CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccH
Confidence             2469999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCH
Q 020527          173 KSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDS  250 (325)
Q Consensus       173 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~  250 (325)
                      +|||.++.  ..+++++.++++.+++++++..+|.|+++.+++  .+||||||||+||||||+++|+|||||||||+||+
T Consensus      1330 reNLd~~~--~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~ 1407 (1622)
T PLN03130       1330 RFNLDPFN--EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDV 1407 (1622)
T ss_pred             HHHhCcCC--CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCH
Confidence            99998763  456888999999999999999999999999875  58999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhc-CHHHHHHHHHh
Q 020527          251 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK-GRLYAKLVKRQ  320 (325)
Q Consensus       251 ~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~  320 (325)
                      ++++.+.+.|++..    +++|+|+|+|+++.+..||||++|++|+|++.|+|++++++ ++.|+++++..
T Consensus      1408 ~Te~~Iq~~I~~~~----~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~ 1474 (1622)
T PLN03130       1408 RTDALIQKTIREEF----KSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQST 1474 (1622)
T ss_pred             HHHHHHHHHHHHHC----CCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHc
Confidence            99999999999874    37899999999999999999999999999999999999986 58899988754

>PTZ00243 ABC transporter; Provisional

Probab=100.00  E-value=4.9e-58  Score=502.52  Aligned_cols=302  Identities=24%  Similarity=0.359  Sum_probs=266.2

Q ss_pred             cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccc------------------------
Q 020527           12 IGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL------------------------   67 (325)
Q Consensus        12 ~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~------------------------   67 (325)
                      .+.+++|.+.+++.|...+..++..++..+..+..+..+++|+.++++..+++..+                        
T Consensus      1211 ~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1290 (1560)
T PTZ00243       1211 ATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVV 1290 (1560)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccc
Confidence            45688998888888889999999999999999999999999999999754321100                        


Q ss_pred             --cc-cc---cccCCcccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEE
Q 020527           68 --SE-GV---KLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI  141 (325)
Q Consensus        68 --~~-~~---~~~~~~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i  141 (325)
                        +. ..   +.++..+.|+++||+|+|++. ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.+
T Consensus      1291 ~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~I 1369 (1560)
T PTZ00243       1291 IEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRV 1369 (1560)
T ss_pred             cccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence              00 00   001123469999999999753 246999999999999999999999999999999999999999999999


Q ss_pred             CCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCC
Q 020527          142 DGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLS  219 (325)
Q Consensus       142 ~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LS  219 (325)
                      ||.|+.+++..++|++|+||||+|.+|++||+|||...  ...++++++++++.+++++++..+|.|+++.+++  .+||
T Consensus      1370 DG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~--~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLS 1447 (1560)
T PTZ00243       1370 NGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPF--LEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYS 1447 (1560)
T ss_pred             CCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcc--cCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCC
Confidence            99999999999999999999999999999999999764  2466889999999999999999999999998874  6899


Q ss_pred             hHHHHHHHHHHHHcCC-CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEE
Q 020527          220 GGQKQRIAIARAILRD-PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRII  298 (325)
Q Consensus       220 gGq~QRv~iAral~~~-p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~  298 (325)
                      ||||||+||||||+++ |+|||||||||+||+++++.+.+.|++..    +++|+|+|+|+++.+..||+|++|++|+|+
T Consensus      1448 gGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~----~~~TvI~IAHRl~ti~~~DrIlVLd~G~Vv 1523 (1560)
T PTZ00243       1448 VGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF----SAYTVITIAHRLHTVAQYDKIIVMDHGAVA 1523 (1560)
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC----CCCEEEEEeccHHHHHhCCEEEEEECCEEE
Confidence            9999999999999995 89999999999999999999999998874    368999999999999999999999999999


Q ss_pred             EEcChHHHhhc-CHHHHHHHHHh
Q 020527          299 EVGNHAELLHK-GRLYAKLVKRQ  320 (325)
Q Consensus       299 ~~g~~~~l~~~-~~~~~~~~~~~  320 (325)
                      +.|+|++++.+ ++.|+++++.+
T Consensus      1524 E~Gt~~eLl~~~~~~f~~l~~~~ 1546 (1560)
T PTZ00243       1524 EMGSPRELVMNRQSIFHSMVEAL 1546 (1560)
T ss_pred             EECCHHHHHhCCCCHHHHHHHHh
Confidence            99999999974 78899998764

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=1.1e-59  Score=414.19  Aligned_cols=217  Identities=34%  Similarity=0.539  Sum_probs=193.7

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      +|+++||||+|++   +.+++|+||+|++||+++++|||||||||+||+|.+|++|++|+|++||+++.+++..++|++|
T Consensus         1 MI~~~nvsk~y~~---~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~I   77 (309)
T COG1125           1 MIEFENVSKRYGN---KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKI   77 (309)
T ss_pred             CceeeeeehhcCC---ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhh
Confidence            3899999999985   4699999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEccCCcCc-cccHHHHHhcCC-----CCCCCHHHHHHHHHHcCHH--HHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527          159 GFVGQEPQLL-QMDIKSNIMYGC-----PKDVKNEDIEWAAKQAYVH--EFILSLPCGYETLVDDDLLSGGQKQRIAIAR  230 (325)
Q Consensus       159 ~~v~Q~~~l~-~~tv~enl~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr  230 (325)
                      |||-|...|| ++||.|||++-.     .+...++++.+.++.++++  ++.+++|         ++|||||+|||.+||
T Consensus        78 GYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP---------~eLSGGQQQRVGv~R  148 (309)
T COG1125          78 GYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP---------HELSGGQQQRVGVAR  148 (309)
T ss_pred             hhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc---------hhcCcchhhHHHHHH
Confidence            9999999999 589999997631     1111233455566666664  4666666         689999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhhc
Q 020527          231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK  309 (325)
Q Consensus       231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~  309 (325)
                      ||+.+|+++|+||||++|||.++.++.+.+.+++++  -|+|||+||||++++- .+|||++|++|+++..++|++++.+
T Consensus       149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~--l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~  226 (309)
T COG1125         149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKE--LGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN  226 (309)
T ss_pred             HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHH--hCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhC
Confidence            999999999999999999999999999999999875  5899999999999985 5999999999999999999999876

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=100.00  E-value=2e-59  Score=421.53  Aligned_cols=224  Identities=30%  Similarity=0.500  Sum_probs=198.5

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .++++|++++|+++   ++++|+||+|++||+++|+||||||||||||+|+|+++|.+|+|+++|+++.+++.+++.+++
T Consensus         2 ~L~~~~ls~~y~~~---~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i   78 (258)
T COG1120           2 MLEVENLSFGYGGK---PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL   78 (258)
T ss_pred             eeEEEEEEEEECCe---eEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence            48999999999854   699999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEccCCcC-ccccHHHHHhcCCCCCC---------CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 020527          159 GFVGQEPQL-LQMDIKSNIMYGCPKDV---------KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI  228 (325)
Q Consensus       159 ~~v~Q~~~l-~~~tv~enl~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i  228 (325)
                      |||||.+.. +..||+|-+.+|+.++.         +.+.+.++++..++.++.++.-         .+|||||||||.|
T Consensus        79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~---------~~LSGGerQrv~i  149 (258)
T COG1120          79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV---------DELSGGERQRVLI  149 (258)
T ss_pred             EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc---------cccChhHHHHHHH
Confidence            999999755 57899999999864321         1224666788888877766643         5799999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHh
Q 020527          229 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELL  307 (325)
Q Consensus       229 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~  307 (325)
                      ||||+++|++|||||||++||..++.+++++++++.++  +|+|+|+|+||++.+. .||++++|++|+++..|+|++++
T Consensus       150 ArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~--~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl  227 (258)
T COG1120         150 ARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNRE--KGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL  227 (258)
T ss_pred             HHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence            99999999999999999999999999999999999864  6899999999999885 59999999999999999999998


Q ss_pred             hcCHHHHHHH
Q 020527          308 HKGRLYAKLV  317 (325)
Q Consensus       308 ~~~~~~~~~~  317 (325)
                      +++ ..++.|
T Consensus       228 T~e-~l~~Vy  236 (258)
T COG1120         228 TEE-NLREVY  236 (258)
T ss_pred             CHH-HHHHHh
Confidence            864 334443

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=100.00  E-value=5.2e-58  Score=499.16  Aligned_cols=316  Identities=37%  Similarity=0.630  Sum_probs=269.3

Q ss_pred             EeeehHHHHhcC--------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccc
Q 020527            2 AVLLGGMSIMIG--------QVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKL   73 (325)
Q Consensus         2 ~~~~g~~~v~~g--------~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~   73 (325)
                      ++|+|++++..|        .+|+|.++++..+.......+..+...+..++.+..+++|++++++.+++..........
T Consensus       298 ~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~~~~~~~  377 (1466)
T PTZ00265        298 GFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVENNDDGKKL  377 (1466)
T ss_pred             HHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCccC
Confidence            468899999986        589999887776655545555667778889999999999999999887653221111111


Q ss_pred             cCCcccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEE-CCEeCCCCCHH
Q 020527           74 QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI-DGFPLTDLDIR  152 (325)
Q Consensus        74 ~~~~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i-~g~~i~~~~~~  152 (325)
                      + ....|+++||+|+|+.+.+.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++ +|.++..++..
T Consensus       378 ~-~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~  456 (1466)
T PTZ00265        378 K-DIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLK  456 (1466)
T ss_pred             C-CCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHH
Confidence            1 123699999999998543346999999999999999999999999999999999999999999999 57898888888


Q ss_pred             HHhcceEEEccCCcCccccHHHHHhcCCCC--------------------------------------------------
Q 020527          153 WLREKIGFVGQEPQLLQMDIKSNIMYGCPK--------------------------------------------------  182 (325)
Q Consensus       153 ~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~--------------------------------------------------  182 (325)
                      ++|++||||||+|.+|+.||+|||.++...                                                  
T Consensus       457 ~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  536 (1466)
T PTZ00265        457 WWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIE  536 (1466)
T ss_pred             HHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhh
Confidence            899999999999999999999999986310                                                  


Q ss_pred             ------CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHH
Q 020527          183 ------DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH  254 (325)
Q Consensus       183 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~  254 (325)
                            ...++++.++++.+++++++.++|.++++.++.  .+||||||||++|||||+++|+|||||||||+||+.++.
T Consensus       537 ~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~  616 (1466)
T PTZ00265        537 MRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEY  616 (1466)
T ss_pred             cccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHH
Confidence                  123467788899999999999999999998874  689999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCC---------------------------------------
Q 020527          255 YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDG---------------------------------------  295 (325)
Q Consensus       255 ~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G---------------------------------------  295 (325)
                      .+.+.|+++.+.  .|+|+|+|||+++.++.||+|++|++|                                       
T Consensus       617 ~i~~~L~~~~~~--~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  694 (1466)
T PTZ00265        617 LVQKTINNLKGN--ENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNN  694 (1466)
T ss_pred             HHHHHHHHHhhc--CCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccccccccccccccccccccccccc
Confidence            999999998642  478999999999999889999999986                                       


Q ss_pred             --------EEEEEcChHHHhh-cCHHHHHHHHHh
Q 020527          296 --------RIIEVGNHAELLH-KGRLYAKLVKRQ  320 (325)
Q Consensus       296 --------~i~~~g~~~~l~~-~~~~~~~~~~~~  320 (325)
                              +|++.|++++++. ..+.|+.+++.|
T Consensus       695 ~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q  728 (1466)
T PTZ00265        695 NKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQ  728 (1466)
T ss_pred             cccccCCceeEeeCCHHHHHhccCCcHHHHHhhh
Confidence                    5999999999997 588999998765

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.5e-58  Score=430.94  Aligned_cols=307  Identities=42%  Similarity=0.619  Sum_probs=282.1

Q ss_pred             ehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcccccccccc-CCcccEEEE
Q 020527            5 LGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQ-RLMGHVQFV   83 (325)
Q Consensus         5 ~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~   83 (325)
                      .++..+..|++|+|+++....+..++..|..-++..+.++.++....++++++++.+.+..+.++.++.+ ...+.+.++
T Consensus       187 ~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pda~~L~~~~~g~v~F~  266 (497)
T COG5265         187 MSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFI  266 (497)
T ss_pred             hcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCCCCccccccccceEEEE
Confidence            4667788999999999999999999999999999999999999999999999999887655444333333 223459999


Q ss_pred             EEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEcc
Q 020527           84 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQ  163 (325)
Q Consensus        84 ~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q  163 (325)
                      ||+|.|..+  +++|+++||++++|+.++++||||+||||++++|.++|++++|.|.+||+++.......+|+.||+|||
T Consensus       267 ~V~F~y~~~--r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQ  344 (497)
T COG5265         267 NVSFAYDPR--RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQ  344 (497)
T ss_pred             EEEeecccc--chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcc
Confidence            999999764  589999999999999999999999999999999999999999999999999998888889999999999


Q ss_pred             CCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEE
Q 020527          164 EPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLL  241 (325)
Q Consensus       164 ~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~llll  241 (325)
                      |..||+.|++.|+.+|. +...++++..+++.+.+.+++..+|.|+++.+++  -.|||||||||+|||+++++|+||+|
T Consensus       345 DtvLFNDti~yni~ygr-~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~  423 (497)
T COG5265         345 DTVLFNDTIAYNIKYGR-PDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILIL  423 (497)
T ss_pred             cceehhhhHHHHHhccC-ccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEE
Confidence            99999999999999995 4677888999999999999999999999999986  46999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHH
Q 020527          242 DEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK  318 (325)
Q Consensus       242 DEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~  318 (325)
                      ||+||+||..+++.++..|++..    .|+|.++|.|+++.+..||.|+||++|+|+|.|+|++++..+++|.+||.
T Consensus       424 deatsaldt~te~~iq~~l~~~~----~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~~~g~ya~mw~  496 (497)
T COG5265         424 DEATSALDTHTEQAIQAALREVS----AGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGGLYAEMWR  496 (497)
T ss_pred             ehhhhHhhhhHHHHHHHHHHHHh----CCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHHcCChHHHHhc
Confidence            99999999999999999999996    47899999999999999999999999999999999999999999999985

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.2e-57  Score=424.46  Aligned_cols=217  Identities=35%  Similarity=0.526  Sum_probs=198.2

Q ss_pred             cccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhc
Q 020527           77 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE  156 (325)
Q Consensus        77 ~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~  156 (325)
                      |..|+++||+|.|++.   .+++++||+|++||+++|+||||||||||||+|+||.+|++|+|+|+|.+++++++.  ++
T Consensus         1 M~~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~--~R   75 (338)
T COG3839           1 MAELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPE--KR   75 (338)
T ss_pred             CcEEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--HC
Confidence            4579999999999753   299999999999999999999999999999999999999999999999999998776  47


Q ss_pred             ceEEEccCCcCc-cccHHHHHhcCCCC-----CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527          157 KIGFVGQEPQLL-QMDIKSNIMYGCPK-----DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR  230 (325)
Q Consensus       157 ~i~~v~Q~~~l~-~~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr  230 (325)
                      .||||||++.|| .+||+||++|+...     ...++++.++++..++.+++++.|         .+|||||||||||||
T Consensus        76 ~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P---------~~LSGGQrQRVAlaR  146 (338)
T COG3839          76 GIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP---------LQLSGGQRQRVALAR  146 (338)
T ss_pred             CEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc---------ccCChhhHHHHHHHH
Confidence            899999999999 58999999998532     223566788899999999999988         679999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhhc
Q 020527          231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK  309 (325)
Q Consensus       231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~  309 (325)
                      ||+++|+++|||||+|+||.+.+..+...|++++++  .|.|+|+||||..++. .+|||.+|++|+|.+.|+|.+++.+
T Consensus       147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~--l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~  224 (338)
T COG3839         147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHER--LGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER  224 (338)
T ss_pred             HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHh--cCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhC
Confidence            999999999999999999999999999999999875  5889999999998885 5999999999999999999999865

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=100.00  E-value=5.3e-56  Score=485.84  Aligned_cols=299  Identities=23%  Similarity=0.346  Sum_probs=262.0

Q ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccc-----------------cccccCC
Q 020527           14 QVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSE-----------------GVKLQRL   76 (325)
Q Consensus        14 ~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-----------------~~~~~~~   76 (325)
                      .++.|.+..++.|...+..++..+...+..+..+..+++|+.++++.+++......                 ..+.++.
T Consensus      1135 ~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~ 1214 (1490)
T TIGR01271      1135 QDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPS 1214 (1490)
T ss_pred             cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCC
Confidence            45566665566677777888888888889999999999999999987765321100                 0011233


Q ss_pred             cccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhc
Q 020527           77 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE  156 (325)
Q Consensus        77 ~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~  156 (325)
                      .+.|+++||+++|+.. .+++|+|+||+|++||++||+|+||||||||+++|+|+++ ++|+|.+||.++.+++...+|+
T Consensus      1215 ~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~ 1292 (1490)
T TIGR01271      1215 GGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRK 1292 (1490)
T ss_pred             CCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHh
Confidence            4579999999999753 3579999999999999999999999999999999999997 7999999999999999999999


Q ss_pred             ceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcC
Q 020527          157 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILR  234 (325)
Q Consensus       157 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~  234 (325)
                      +|+||||+|.+|++||++||...  ...++++++++++.+++.+++..+|.|+++.+++  .+||||||||+||||||++
T Consensus      1293 ~is~IpQdp~LF~GTIR~NLdp~--~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr 1370 (1490)
T TIGR01271      1293 AFGVIPQKVFIFSGTFRKNLDPY--EQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILS 1370 (1490)
T ss_pred             ceEEEeCCCccCccCHHHHhCcc--cCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhC
Confidence            99999999999999999999753  2456889999999999999999999999998874  5899999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHH
Q 020527          235 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYA  314 (325)
Q Consensus       235 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~  314 (325)
                      +|+|||||||||+||+.+.+.+.+.|++..    +++|||+|||+++.+..||+|++|++|+|++.|+|++++.++..|+
T Consensus      1371 ~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~----~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~~~~f~ 1446 (1490)
T TIGR01271      1371 KAKILLLDEPSAHLDPVTLQIIRKTLKQSF----SNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFK 1446 (1490)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHc----CCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcCCcHHH
Confidence            999999999999999999999999998874    3689999999999999999999999999999999999998888999


Q ss_pred             HHHHHh
Q 020527          315 KLVKRQ  320 (325)
Q Consensus       315 ~~~~~~  320 (325)
                      ++++.+
T Consensus      1447 ~l~~~~ 1452 (1490)
T TIGR01271      1447 QAMSAA 1452 (1490)
T ss_pred             HHHHHh
Confidence            998764

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=1.4e-57  Score=426.14  Aligned_cols=216  Identities=32%  Similarity=0.539  Sum_probs=196.4

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .++++||+|+|++   ..+++|+||+|++||+++|+||||||||||||+|+|+..|++|+|.++|+++..+++.  ++.|
T Consensus         5 ~l~i~~v~k~yg~---~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i   79 (352)
T COG3842           5 ALEIRNVSKSFGD---FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI   79 (352)
T ss_pred             eEEEEeeeeecCC---eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence            5899999999984   4799999999999999999999999999999999999999999999999999988765  5789


Q ss_pred             EEEccCCcCc-cccHHHHHhcCCC-CC-CC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 020527          159 GFVGQEPQLL-QMDIKSNIMYGCP-KD-VK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA  231 (325)
Q Consensus       159 ~~v~Q~~~l~-~~tv~enl~~~~~-~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra  231 (325)
                      |+|||++.|| ++||+|||+||.. .. ..    .+++.++++.+++.++.++.|         ++|||||+|||+||||
T Consensus        80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p---------~qLSGGQqQRVALARA  150 (352)
T COG3842          80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP---------HQLSGGQQQRVALARA  150 (352)
T ss_pred             ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh---------hhhChHHHHHHHHHHH
Confidence            9999999999 5999999999975 11 11    236777888888888888877         6799999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhhcC
Q 020527          232 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHKG  310 (325)
Q Consensus       232 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~~  310 (325)
                      |+.+|++||||||.|+||.+-+.++...++++.++  .|.|.|+||||.+++- .+|||.+|++|+|...|+|++++...
T Consensus       151 L~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~--~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P  228 (352)
T COG3842         151 LVPEPKVLLLDEPLSALDAKLREQMRKELKELQRE--LGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP  228 (352)
T ss_pred             hhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHh--cCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence            99999999999999999999999999999999875  5999999999999875 59999999999999999999998753

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=3.7e-57  Score=395.91  Aligned_cols=227  Identities=31%  Similarity=0.489  Sum_probs=195.3

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHH---HHh
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLR  155 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~---~~r  155 (325)
                      .|++++|+++|+++   .+++|+||+|++||+++|+||||||||||+|+|.|+++|++|+|+++|+++...+..   .+|
T Consensus         8 ~I~vr~v~~~fG~~---~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir   84 (263)
T COG1127           8 LIEVRGVTKSFGDR---VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR   84 (263)
T ss_pred             eEEEeeeeeecCCE---EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence            49999999999864   699999999999999999999999999999999999999999999999999887753   568


Q ss_pred             cceEEEccCCcCc-cccHHHHHhcCCCC--CCCHHHH----HHHHHHcCHHHH-HHhCCCCcccccCCCCCChHHHHHHH
Q 020527          156 EKIGFVGQEPQLL-QMDIKSNIMYGCPK--DVKNEDI----EWAAKQAYVHEF-ILSLPCGYETLVDDDLLSGGQKQRIA  227 (325)
Q Consensus       156 ~~i~~v~Q~~~l~-~~tv~enl~~~~~~--~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~LSgGq~QRv~  227 (325)
                      +++|++||+..|| ++||+||++|....  +..+..+    ...++.+++... .+.+|         .+|||||++|++
T Consensus        85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P---------sELSGGM~KRva  155 (263)
T COG1127          85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP---------SELSGGMRKRVA  155 (263)
T ss_pred             hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc---------hhhcchHHHHHH
Confidence            9999999999999 68999999986421  2223322    223445555544 45555         789999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHH
Q 020527          228 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL  306 (325)
Q Consensus       228 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l  306 (325)
                      ||||++.+|+|+++||||+||||.+...+-++++++++.  -|.|+++||||++.+.. |||++++.+|+|+..|+++++
T Consensus       156 LARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~--lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el  233 (263)
T COG1127         156 LARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDA--LGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL  233 (263)
T ss_pred             HHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHh--hCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence            999999999999999999999999999999999999874  58999999999999865 999999999999999999999


Q ss_pred             hhcC-HHHHHHHHH
Q 020527          307 LHKG-RLYAKLVKR  319 (325)
Q Consensus       307 ~~~~-~~~~~~~~~  319 (325)
                      .+.+ .+.++++..
T Consensus       234 ~~sd~P~v~qf~~G  247 (263)
T COG1127         234 LASDDPWVRQFFNG  247 (263)
T ss_pred             HhCCCHHHHHHhcC
Confidence            8764 445565543

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.4e-56  Score=401.33  Aligned_cols=215  Identities=30%  Similarity=0.541  Sum_probs=187.2

Q ss_pred             ccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 020527           78 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK  157 (325)
Q Consensus        78 ~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~  157 (325)
                      ..|+++|++++|+++   ++|+||||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|++......   +.+
T Consensus         3 ~~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~   76 (254)
T COG1121           3 PMIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLR   76 (254)
T ss_pred             cEEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCe
Confidence            359999999999753   49999999999999999999999999999999999999999999999988754321   468


Q ss_pred             eEEEccCCcC---ccccHHHHHhcCCCCC---------CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527          158 IGFVGQEPQL---LQMDIKSNIMYGCPKD---------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR  225 (325)
Q Consensus       158 i~~v~Q~~~l---~~~tv~enl~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR  225 (325)
                      ||||||...+   |+.||+|-+.+|...+         .+.+.+.++++++++.++.++..         .+|||||+||
T Consensus        77 IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i---------~~LSGGQ~QR  147 (254)
T COG1121          77 IGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQI---------GELSGGQKQR  147 (254)
T ss_pred             EEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcc---------cccCcHHHHH
Confidence            9999997643   6899999999874322         12466788888888888776544         5799999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChH
Q 020527          226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA  304 (325)
Q Consensus       226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~  304 (325)
                      |.|||||+++|++|+|||||+|+|+.++..+.++|+++++   +|+||++||||++.+. .||+|+.|+ +++++.|+++
T Consensus       148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~---eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~  223 (254)
T COG1121         148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ---EGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPE  223 (254)
T ss_pred             HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChh
Confidence            9999999999999999999999999999999999999986   3999999999999885 599999995 5788999999


Q ss_pred             HHhhcCH
Q 020527          305 ELLHKGR  311 (325)
Q Consensus       305 ~l~~~~~  311 (325)
                      ++++.+.
T Consensus       224 ~~~~~~~  230 (254)
T COG1121         224 EVLTEEN  230 (254)
T ss_pred             hccCHHH
Confidence            9987644

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.6e-57  Score=393.79  Aligned_cols=216  Identities=35%  Similarity=0.519  Sum_probs=187.0

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCC---HHHHh
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD---IRWLR  155 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~---~~~~r  155 (325)
                      +|+++||++.|+++  +++|+||||+|++||+++|+||||||||||||+|+|+.+|++|+|.++|.++..+.   .+.+|
T Consensus         3 ~i~~~nl~k~yp~~--~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r   80 (258)
T COG3638           3 MIEVKNLSKTYPGG--HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR   80 (258)
T ss_pred             eEEEeeeeeecCCC--ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence            59999999999753  57999999999999999999999999999999999999999999999999887765   45678


Q ss_pred             cceEEEccCCcCc-cccHHHHHhcCCCC-------------CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChH
Q 020527          156 EKIGFVGQEPQLL-QMDIKSNIMYGCPK-------------DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGG  221 (325)
Q Consensus       156 ~~i~~v~Q~~~l~-~~tv~enl~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgG  221 (325)
                      ++|||+||+++|. +.||.+|+..|+..             ........++++++++.+...+.         ..+||||
T Consensus        81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qr---------a~~LSGG  151 (258)
T COG3638          81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQR---------ASTLSGG  151 (258)
T ss_pred             HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHH---------hccCCcc
Confidence            8999999999997 68999999766321             11122334455666655544332         2579999


Q ss_pred             HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEE
Q 020527          222 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEV  300 (325)
Q Consensus       222 q~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~  300 (325)
                      |+|||+|||||+++|+++|.|||+|+|||.+.+++++.|++++++  .|.|+|+..|+++.+. +||||+-|++|+|+.+
T Consensus       152 QQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~--~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD  229 (258)
T COG3638         152 QQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQE--DGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD  229 (258)
T ss_pred             hhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHH--cCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence            999999999999999999999999999999999999999999875  6999999999999996 5999999999999999


Q ss_pred             cChHHHh
Q 020527          301 GNHAELL  307 (325)
Q Consensus       301 g~~~~l~  307 (325)
                      |++.++-
T Consensus       230 g~~~el~  236 (258)
T COG3638         230 GPASELT  236 (258)
T ss_pred             CChhhhh
Confidence            9998853

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.7e-57  Score=387.95  Aligned_cols=219  Identities=31%  Similarity=0.480  Sum_probs=190.6

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCC-----CeEEECCEeCCCC--CH
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-----GQIYIDGFPLTDL--DI  151 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~-----G~I~i~g~~i~~~--~~  151 (325)
                      .++++|+++.|+.+   .+|+|||++|++++++|++||||||||||||++.++....+     |+|.++|+++.+.  +.
T Consensus         7 ~~~~~~l~~yYg~~---~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~   83 (253)
T COG1117           7 AIEVRDLNLYYGDK---HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV   83 (253)
T ss_pred             eeEecceeEEECch---hhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence            48999999999854   69999999999999999999999999999999999988765     9999999999654  57


Q ss_pred             HHHhcceEEEccCCcCccccHHHHHhcCCCCC-----CCHHHHHHHHHHcCHHHHHH-hCCCCcccccCCCCCChHHHHH
Q 020527          152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFIL-SLPCGYETLVDDDLLSGGQKQR  225 (325)
Q Consensus       152 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~LSgGq~QR  225 (325)
                      ..+|++||+|||.|..|++|++||++||...+     .-++.++++++.+.+++-+. ++.      ..+..|||||+||
T Consensus        84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~------~sa~~LSGGQQQR  157 (253)
T COG1117          84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLH------KSALGLSGGQQQR  157 (253)
T ss_pred             HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhh------CCccCCChhHHHH
Confidence            78999999999999999999999999984321     11344666777777765433 221      1124599999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChH
Q 020527          226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA  304 (325)
Q Consensus       226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~  304 (325)
                      +||||||+.+|+|||||||||+|||.+..+|.+++.++++    ..|||+|||+|..+.+ +|+..++..|+++|.|+.+
T Consensus       158 LcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~----~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~  233 (253)
T COG1117         158 LCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK----KYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTD  233 (253)
T ss_pred             HHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh----ccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHH
Confidence            9999999999999999999999999999999999999974    5799999999999876 8999999999999999999


Q ss_pred             HHhhcC
Q 020527          305 ELLHKG  310 (325)
Q Consensus       305 ~l~~~~  310 (325)
                      +++++.
T Consensus       234 ~iF~~P  239 (253)
T COG1117         234 KIFTNP  239 (253)
T ss_pred             hhhcCc
Confidence            999864

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=100.00  E-value=1.1e-55  Score=444.43  Aligned_cols=279  Identities=21%  Similarity=0.294  Sum_probs=239.9

Q ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCC--Ccc-ccccc-----cccCCcccEEEEE
Q 020527           13 GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPS--NQF-LSEGV-----KLQRLMGHVQFVN   84 (325)
Q Consensus        13 g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~--~~~-~~~~~-----~~~~~~~~i~~~~   84 (325)
                      |.+|+|++++|..+...+..|+..+...+..++++..+++|+.++++.+.+  ... .+...     ........|+++|
T Consensus       263 ~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  342 (555)
T TIGR01194       263 ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKD  342 (555)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEE
Confidence            799999999999999999999999999999999999999999999864211  110 01000     0011123599999


Q ss_pred             EEEECCCCC--CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEc
Q 020527           85 ISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG  162 (325)
Q Consensus        85 v~~~y~~~~--~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~  162 (325)
                      |+|+|+++.  ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+..++|++++|++
T Consensus       343 v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~  422 (555)
T TIGR01194       343 VHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIF  422 (555)
T ss_pred             EEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEc
Confidence            999997531  135999999999999999999999999999999999999999999999999999988888999999999


Q ss_pred             cCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEe
Q 020527          163 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLD  242 (325)
Q Consensus       163 Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllD  242 (325)
                      |++.+|+.|+++|..    +...++++.++++.++++++++.+|.|+++.   .+||||||||++||||++++|+++|||
T Consensus       423 q~~~lf~~ti~~n~~----~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~---~~LSgGq~qRlalaRall~~~~ililD  495 (555)
T TIGR01194       423 ADFHLFDDLIGPDEG----EHASLDNAQQYLQRLEIADKVKIEDGGFSTT---TALSTGQQKRLALICAWLEDRPILLFD  495 (555)
T ss_pred             cChhhhhhhhhcccc----cchhHHHHHHHHHHcCCchhhcccccccCCc---ccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            999999999999952    2345677888999999999999999998875   679999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHH-HhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEc
Q 020527          243 EATSALDSESEHYVKGVLH-ALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG  301 (325)
Q Consensus       243 EPts~LD~~~~~~i~~~l~-~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g  301 (325)
                      ||||+||+++++.+.+.+. .+..   +++|+|+|||+++.+..||+|++|++|++++.-
T Consensus       496 E~ts~LD~~~~~~i~~~l~~~~~~---~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~~  552 (555)
T TIGR01194       496 EWAADQDPAFKRFFYEELLPDLKR---QGKTIIIISHDDQYFELADQIIKLAAGCIVKDT  552 (555)
T ss_pred             CCccCCCHHHHHHHHHHHHHHHHh---CCCEEEEEeccHHHHHhCCEEEEEECCEEEEec
Confidence            9999999999999988654 4432   378999999999988889999999999998753

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=3.6e-56  Score=393.14  Aligned_cols=208  Identities=38%  Similarity=0.535  Sum_probs=175.2

Q ss_pred             EEEEEEEEECCCCC-CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHH---H-H
Q 020527           80 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---W-L  154 (325)
Q Consensus        80 i~~~~v~~~y~~~~-~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~---~-~  154 (325)
                      ++++||++.|+... ...+|+++||+|++||+++|+|||||||||||++|.|+.+|++|.|.++|+++..++.+   . .
T Consensus         2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R   81 (226)
T COG1136           2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR   81 (226)
T ss_pred             cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence            67999999996432 24699999999999999999999999999999999999999999999999999887743   2 3


Q ss_pred             hcceEEEccCCcCc-cccHHHHHhcCCC----CC-CCHHHHHHHHHHcCHHHHHH-hCCCCcccccCCCCCChHHHHHHH
Q 020527          155 REKIGFVGQEPQLL-QMDIKSNIMYGCP----KD-VKNEDIEWAAKQAYVHEFIL-SLPCGYETLVDDDLLSGGQKQRIA  227 (325)
Q Consensus       155 r~~i~~v~Q~~~l~-~~tv~enl~~~~~----~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~LSgGq~QRv~  227 (325)
                      |++||||||+++|+ .+||.|||.++..    .. ...+.....++.+++.+... +.|         .+||||||||||
T Consensus        82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p---------~eLSGGqqQRVA  152 (226)
T COG1136          82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP---------SELSGGQQQRVA  152 (226)
T ss_pred             HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc---------hhcCHHHHHHHH
Confidence            56799999999998 5899999985421    11 11223344445555554433 333         689999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEE
Q 020527          228 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRII  298 (325)
Q Consensus       228 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~  298 (325)
                      |||||+.+|+++|+||||++||.++.+.+++++.++.++  .|+|+|+||||...+..|||++.|++|++.
T Consensus       153 IARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~--~g~tii~VTHd~~lA~~~dr~i~l~dG~~~  221 (226)
T COG1136         153 IARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKE--RGKTIIMVTHDPELAKYADRVIELKDGKIE  221 (226)
T ss_pred             HHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHh--cCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence            999999999999999999999999999999999999764  589999999999999999999999999953

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.4e-56  Score=392.89  Aligned_cols=200  Identities=35%  Similarity=0.542  Sum_probs=175.0

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .+++++|+++|++   ..+|+|+||+|++||+++|+||||||||||||+|+|+.+|++|+|.++|.++...     ...+
T Consensus         3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~   74 (248)
T COG1116           3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI   74 (248)
T ss_pred             eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCE
Confidence            4899999999986   3699999999999999999999999999999999999999999999999988432     3579


Q ss_pred             EEEccCCcCcc-ccHHHHHhcCCCCC-----CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 020527          159 GFVGQEPQLLQ-MDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI  232 (325)
Q Consensus       159 ~~v~Q~~~l~~-~tv~enl~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral  232 (325)
                      +||||++.||+ .||+||+.++....     ...+...+.++.+++.++.+++|         ++|||||||||+|||||
T Consensus        75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P---------~qLSGGMrQRVaiARAL  145 (248)
T COG1116          75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP---------HQLSGGMRQRVAIARAL  145 (248)
T ss_pred             EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc---------cccChHHHHHHHHHHHH
Confidence            99999999995 89999999875321     11234556677777777777766         78999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeC--CEE
Q 020527          233 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD--GRI  297 (325)
Q Consensus       233 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~--G~i  297 (325)
                      +.+|++|||||||++||..++..+.+.+.++.++  .++||++||||++++-. +|||++|.+  |+|
T Consensus       146 ~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~--~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i  211 (248)
T COG1116         146 ATRPKLLLLDEPFGALDALTREELQDELLRLWEE--TRKTVLLVTHDVDEAVYLADRVVVLSNRPGRI  211 (248)
T ss_pred             hcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHh--hCCEEEEEeCCHHHHHhhhCEEEEecCCCcce
Confidence            9999999999999999999999999999988764  57899999999999865 999999999  445

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=100.00  E-value=2.9e-56  Score=377.15  Aligned_cols=210  Identities=30%  Similarity=0.483  Sum_probs=187.4

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCH---HHHh
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI---RWLR  155 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~---~~~r  155 (325)
                      +|+++||+|.|++.  +++|+||||+|++||++-|+||||||||||+|+|++..+|++|+|+++|.++..+..   ..+|
T Consensus         1 mI~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LR   78 (223)
T COG2884           1 MIRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLR   78 (223)
T ss_pred             CeeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhh
Confidence            38999999999864  579999999999999999999999999999999999999999999999999987654   4579


Q ss_pred             cceEEEccCCcCc-cccHHHHHhcCCC-----CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 020527          156 EKIGFVGQEPQLL-QMDIKSNIMYGCP-----KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA  229 (325)
Q Consensus       156 ~~i~~v~Q~~~l~-~~tv~enl~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA  229 (325)
                      ++||+||||..|+ ..||+||++|+..     +....+++.++++.+++.+....+|         .+|||||||||+||
T Consensus        79 R~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP---------~~LSGGEQQRvaIA  149 (223)
T COG2884          79 RQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP---------SQLSGGEQQRVAIA  149 (223)
T ss_pred             heeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc---------cccCchHHHHHHHH
Confidence            9999999999987 6899999998642     2222456677888888888777777         67999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcC
Q 020527          230 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN  302 (325)
Q Consensus       230 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~  302 (325)
                      ||++.+|++||.||||.+|||....++++++.++.+   .|.||+|+|||.+.+.. --|++.+++|+++.+..
T Consensus       150 RAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr---~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~  220 (223)
T COG2884         150 RAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR---LGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES  220 (223)
T ss_pred             HHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh---cCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence            999999999999999999999999999999999975   59999999999999987 57899999999987654

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.1e-55  Score=398.36  Aligned_cols=216  Identities=31%  Similarity=0.494  Sum_probs=189.1

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCE---eCCCCCHHHHh
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF---PLTDLDIRWLR  155 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~---~i~~~~~~~~r  155 (325)
                      +|+++|+++.|+..   .+++|||++|+.||.+|++||||||||||||+|+||..|++|+|.+||+   |.+...  ...
T Consensus         2 ~i~i~~~~~~~~~~---~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~--~~~   76 (345)
T COG1118           2 SIRINNVKKRFGAF---GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA--VRD   76 (345)
T ss_pred             ceeehhhhhhcccc---cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccc--hhh
Confidence            48999999999764   6999999999999999999999999999999999999999999999999   554432  234


Q ss_pred             cceEEEccCCcCc-cccHHHHHhcCCCCC-------CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 020527          156 EKIGFVGQEPQLL-QMDIKSNIMYGCPKD-------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA  227 (325)
Q Consensus       156 ~~i~~v~Q~~~l~-~~tv~enl~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~  227 (325)
                      ++||||||++.+| .+||.+||+||....       ..+.++.+.++.++++.+.+++|         .+||||||||||
T Consensus        77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP---------~QLSGGQrQRVA  147 (345)
T COG1118          77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP---------AQLSGGQRQRVA  147 (345)
T ss_pred             cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc---------hhcChHHHHHHH
Confidence            7899999999998 699999999996321       22344555666677777767666         689999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHH
Q 020527          228 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL  306 (325)
Q Consensus       228 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l  306 (325)
                      |||||+.+|++||||||+++||...++.+...|+++.++  .|.|+++||||.+++.. ||||++|++|+|...|+|+++
T Consensus       148 LARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~--~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev  225 (345)
T COG1118         148 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDR--LGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV  225 (345)
T ss_pred             HHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHh--hCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence            999999999999999999999999999999999999864  58999999999999854 999999999999999999999


Q ss_pred             hhcC
Q 020527          307 LHKG  310 (325)
Q Consensus       307 ~~~~  310 (325)
                      +...
T Consensus       226 ~~~P  229 (345)
T COG1118         226 YDHP  229 (345)
T ss_pred             hcCC
Confidence            8653

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=7.3e-55  Score=382.82  Aligned_cols=228  Identities=35%  Similarity=0.507  Sum_probs=193.9

Q ss_pred             cEEEEEEEEECCCCC-CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCC-HHHHhc
Q 020527           79 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-IRWLRE  156 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~-~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~-~~~~r~  156 (325)
                      .++++|+++.|+.+. ..+++++|||+|.+||++||+|+||||||||.|+|+|+.+|++|+|.++|+++.... .+..++
T Consensus         3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~   82 (252)
T COG1124           3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR   82 (252)
T ss_pred             eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence            589999999998642 125999999999999999999999999999999999999999999999998776432 335678


Q ss_pred             ceEEEccCCcC--c-cccHHHHHhcCCCC---CCCHHHHHHHHHHcCHH-HHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 020527          157 KIGFVGQEPQL--L-QMDIKSNIMYGCPK---DVKNEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQRIAIA  229 (325)
Q Consensus       157 ~i~~v~Q~~~l--~-~~tv~enl~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA  229 (325)
                      .|.+|||||.-  - ..||++-|.-+...   ....+++.++++.+++. +++++.|         .+|||||+||||||
T Consensus        83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P---------~eLSGGQ~QRiaIA  153 (252)
T COG1124          83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP---------HELSGGQRQRIAIA  153 (252)
T ss_pred             ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc---------hhcChhHHHHHHHH
Confidence            89999999953  3 46999988755321   12234467778888774 4677777         67999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527          230 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH  308 (325)
Q Consensus       230 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~  308 (325)
                      |||..+|++||||||||+||+..+.+++++|.+++++  .+.|.|+||||+..+.+ ||||++|++|++++.++.+++.+
T Consensus       154 RAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~--~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~  231 (252)
T COG1124         154 RALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKE--RGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS  231 (252)
T ss_pred             HHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHh--cCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence            9999999999999999999999999999999999875  58899999999999986 99999999999999999999987


Q ss_pred             c-CHHHHHHH
Q 020527          309 K-GRLYAKLV  317 (325)
Q Consensus       309 ~-~~~~~~~~  317 (325)
                      . ..-|.+.+
T Consensus       232 ~~~h~ytr~L  241 (252)
T COG1124         232 HPSHPYTREL  241 (252)
T ss_pred             CCccHHHHHH
Confidence            6 44554443

>PLN03232 ABC transporter C family member; Provisional

Probab=100.00  E-value=3.9e-54  Score=471.67  Aligned_cols=298  Identities=24%  Similarity=0.346  Sum_probs=259.2

Q ss_pred             eeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEEE
Q 020527            3 VLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQF   82 (325)
Q Consensus         3 ~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   82 (325)
                      +++|+|++..|.+|+|.+++++.++..+..|+..+...+..+.++..+++|+.++++.+++.... .. ........+++
T Consensus       540 ~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~-~~-~~~~~~~~I~~  617 (1495)
T PLN03232        540 VSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQ-NP-PLQPGAPAISI  617 (1495)
T ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccc-cC-CcCCCCCcEEE
Confidence            45688999999999999999999999999999999999999999999999999999876542111 10 11111235999


Q ss_pred             EEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEc
Q 020527           83 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG  162 (325)
Q Consensus        83 ~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~  162 (325)
                      +|++|+|+.+.++++|+|+||+|++||.++|+||||||||||+++|+|+++|++|.+.            .+|++|+||+
T Consensus       618 ~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~------------~~~~~Iayv~  685 (1495)
T PLN03232        618 KNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV------------VIRGSVAYVP  685 (1495)
T ss_pred             EeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE------------EecCcEEEEc
Confidence            9999999753235799999999999999999999999999999999999999999763            2467899999


Q ss_pred             cCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEE
Q 020527          163 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILL  240 (325)
Q Consensus       163 Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~lll  240 (325)
                      |+|.+|++||+|||.||.+  .++++..++++.+++.+.++.+|.|++|.+++  .+||||||||++||||++++|+|+|
T Consensus       686 Q~p~Lf~gTIreNI~fg~~--~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlL  763 (1495)
T PLN03232        686 QVSWIFNATVRENILFGSD--FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYI  763 (1495)
T ss_pred             CccccccccHHHHhhcCCc--cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEE
Confidence            9999999999999999853  46788889999999999999999999999885  5799999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHH-HHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHHH
Q 020527          241 LDEATSALDSESEHYVKGV-LHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKR  319 (325)
Q Consensus       241 lDEPts~LD~~~~~~i~~~-l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~  319 (325)
                      ||||||+||+.+++.+.+. +....    +++|+|+|||+++.+..||+|++|++|++++.|+++++++.+..|.+++..
T Consensus       764 LDEptSaLD~~t~~~I~~~~l~~~l----~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~~~~~~~l~~~  839 (1495)
T PLN03232        764 FDDPLSALDAHVAHQVFDSCMKDEL----KGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMEN  839 (1495)
T ss_pred             EcCCccccCHHHHHHHHHHHhhhhh----cCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhcchhHHHHHHh
Confidence            9999999999999888654 55442    478999999999999999999999999999999999999888888888765


Q ss_pred             h
Q 020527          320 Q  320 (325)
Q Consensus       320 ~  320 (325)
                      +
T Consensus       840 ~  840 (1495)
T PLN03232        840 A  840 (1495)
T ss_pred             c
Confidence            3

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.3e-55  Score=393.91  Aligned_cols=219  Identities=36%  Similarity=0.610  Sum_probs=193.5

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCC-CCCHHHHhcc
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT-DLDIRWLREK  157 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~-~~~~~~~r~~  157 (325)
                      .++++|++|+|+++  .++|+++||+|++||+++|+|+||||||||+++++|+++|++|+|.++|.++. ..+...+|++
T Consensus         3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~   80 (235)
T COG1122           3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK   80 (235)
T ss_pred             eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence            48999999999764  47999999999999999999999999999999999999999999999999987 3567788999


Q ss_pred             eEEEccCC--cCccccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527          158 IGFVGQEP--QLLQMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR  230 (325)
Q Consensus       158 i~~v~Q~~--~l~~~tv~enl~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr  230 (325)
                      ||||||+|  ++|..||.|.++||... ...    ++++.++++.+++.++.++.|         .+|||||||||+||.
T Consensus        81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p---------~~LSGGqkqRvaIA~  151 (235)
T COG1122          81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP---------FNLSGGQKQRVAIAG  151 (235)
T ss_pred             eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc---------cccCCcceeeHHhhH
Confidence            99999999  67789999999998421 112    234556677777776655555         679999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhc
Q 020527          231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK  309 (325)
Q Consensus       231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~  309 (325)
                      +|+.+|++||||||||+||+..++.+++.+++++++  .|+|+|++|||++.+.. |||+++|++|+++.+|+|++++++
T Consensus       152 vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~--~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~  229 (235)
T COG1122         152 VLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEE--GGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND  229 (235)
T ss_pred             HHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhc--CCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence            999999999999999999999999999999999864  47899999999999865 999999999999999999999875


Q ss_pred             C
Q 020527          310 G  310 (325)
Q Consensus       310 ~  310 (325)
                      .
T Consensus       230 ~  230 (235)
T COG1122         230 A  230 (235)
T ss_pred             h
Confidence            4

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.4e-54  Score=410.39  Aligned_cols=219  Identities=32%  Similarity=0.484  Sum_probs=186.8

Q ss_pred             EEEEEEEEECCCCC-CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHH---HHh
Q 020527           80 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLR  155 (325)
Q Consensus        80 i~~~~v~~~y~~~~-~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~---~~r  155 (325)
                      |+++||+++|+++. ..++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..++..   ..|
T Consensus         2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r   81 (343)
T TIGR02314         2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR   81 (343)
T ss_pred             EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence            89999999996321 24699999999999999999999999999999999999999999999999999876543   357


Q ss_pred             cceEEEccCCcCc-cccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 020527          156 EKIGFVGQEPQLL-QMDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA  229 (325)
Q Consensus       156 ~~i~~v~Q~~~l~-~~tv~enl~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA  229 (325)
                      ++|||+||++.+| ..||+||+.++.. ....    .+++.+.++.+++.+..++.+         .+|||||||||+||
T Consensus        82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~---------~~LSgGqkQRV~IA  152 (343)
T TIGR02314        82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP---------SNLSGGQKQRVAIA  152 (343)
T ss_pred             cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHHHH
Confidence            8899999999998 5899999987532 1111    123444555556555544443         67999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527          230 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH  308 (325)
Q Consensus       230 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~  308 (325)
                      |||+.+|++||+|||||+||+.++..++++|++++++  .|.|||+|||+++.+.. ||+|++|++|++++.|++++++.
T Consensus       153 RAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~--~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~  230 (343)
T TIGR02314       153 RALASNPKVLLCDEATSALDPATTQSILELLKEINRR--LGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS  230 (343)
T ss_pred             HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence            9999999999999999999999999999999999753  48899999999999865 99999999999999999999986


Q ss_pred             c
Q 020527          309 K  309 (325)
Q Consensus       309 ~  309 (325)
                      .
T Consensus       231 ~  231 (343)
T TIGR02314       231 H  231 (343)
T ss_pred             C
Confidence            4

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PLN03130 ABC transporter C family member; Provisional

Probab=100.00  E-value=1.1e-53  Score=469.04  Aligned_cols=297  Identities=24%  Similarity=0.401  Sum_probs=258.4

Q ss_pred             eeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEEE
Q 020527            3 VLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQF   82 (325)
Q Consensus         3 ~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   82 (325)
                      +++|+|++..|.+|+|.+++++.++..+..|+..+...+..+.++..+++|+.++++.++..... .. ........|++
T Consensus       540 ~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~-~~-~~~~~~~~I~~  617 (1622)
T PLN03130        540 VSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLP-NP-PLEPGLPAISI  617 (1622)
T ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccc-CC-cccCCCCceEE
Confidence            35688899999999999999999999999999999999999999999999999999765432111 11 00111235999


Q ss_pred             EEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCC-CeEEECCEeCCCCCHHHHhcceEEE
Q 020527           83 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-GQIYIDGFPLTDLDIRWLREKIGFV  161 (325)
Q Consensus        83 ~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~-G~I~i~g~~i~~~~~~~~r~~i~~v  161 (325)
                      +|++|+|+.+.++++|+|+||+|++||.++|+||||||||||+++|+|+++|++ |+|.+             |.+|+||
T Consensus       618 ~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l-------------~~~Iayv  684 (1622)
T PLN03130        618 KNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI-------------RGTVAYV  684 (1622)
T ss_pred             EeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-------------cCeEEEE
Confidence            999999975323579999999999999999999999999999999999999999 89974             4579999


Q ss_pred             ccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEE
Q 020527          162 GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAIL  239 (325)
Q Consensus       162 ~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~ll  239 (325)
                      +|+|.+|++||+|||.||.+  .++++..++++.+++.+.++.+|.|++|.+++  .+|||||||||+||||++++|+|+
T Consensus       685 ~Q~p~LfngTIreNI~fg~~--~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~Il  762 (1622)
T PLN03130        685 PQVSWIFNATVRDNILFGSP--FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVY  762 (1622)
T ss_pred             cCccccCCCCHHHHHhCCCc--ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEE
Confidence            99999999999999999853  45778899999999999999999999999875  579999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHH-HHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHH
Q 020527          240 LLDEATSALDSESEHYVKG-VLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK  318 (325)
Q Consensus       240 llDEPts~LD~~~~~~i~~-~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~  318 (325)
                      |||||||+||+.+.+.+.+ .+..+.    +++|+|+|||+++.+..||+|++|++|++++.|+++++++.+..|.+++.
T Consensus       763 LLDEptSALD~~~~~~I~~~~l~~~l----~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~~~~~~~l~~  838 (1622)
T PLN03130        763 IFDDPLSALDAHVGRQVFDKCIKDEL----RGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKLME  838 (1622)
T ss_pred             EECCCccccCHHHHHHHHHHHhhHHh----cCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhcchhHHHHHH
Confidence            9999999999999988764 555543    47899999999999999999999999999999999999988888888776


Q ss_pred             Hh
Q 020527          319 RQ  320 (325)
Q Consensus       319 ~~  320 (325)
                      .+
T Consensus       839 ~~  840 (1622)
T PLN03130        839 NA  840 (1622)
T ss_pred             hc
Confidence            43

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=100.00  E-value=3.3e-53  Score=390.42  Aligned_cols=233  Identities=24%  Similarity=0.409  Sum_probs=208.9

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .|+++|++++|++. ...+|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+|+|.++..++...+|++|
T Consensus         2 ~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i   79 (275)
T cd03289           2 QMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF   79 (275)
T ss_pred             eEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence            48999999999642 2469999999999999999999999999999999999998 799999999999888888889999


Q ss_pred             EEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCC
Q 020527          159 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDP  236 (325)
Q Consensus       159 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p  236 (325)
                      +|+||++.+|+.|+++|+....  ....+++.++++.+++.++++++|.++++.+.  +..||||||||++||||++.+|
T Consensus        80 ~~v~q~~~lf~~tv~~nl~~~~--~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p  157 (275)
T cd03289          80 GVIPQKVFIFSGTFRKNLDPYG--KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA  157 (275)
T ss_pred             EEECCCcccchhhHHHHhhhcc--CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence            9999999999999999996321  23456778888999999999999988887765  3679999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHH
Q 020527          237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKL  316 (325)
Q Consensus       237 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~  316 (325)
                      +||||||||++||+.+...+.+.|+++.    .++|||+|||+++.+..||||++|++|++++.|+|+++++....|+++
T Consensus       158 ~illlDEpts~LD~~~~~~l~~~l~~~~----~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~  233 (275)
T cd03289         158 KILLLDEPSAHLDPITYQVIRKTLKQAF----ADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQA  233 (275)
T ss_pred             CEEEEECccccCCHHHHHHHHHHHHHhc----CCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHH
Confidence            9999999999999999999999999873    378999999999988789999999999999999999999987778887


Q ss_pred             HHH
Q 020527          317 VKR  319 (325)
Q Consensus       317 ~~~  319 (325)
                      +..
T Consensus       234 ~~~  236 (275)
T cd03289         234 ISP  236 (275)
T ss_pred             Hhh
Confidence            754

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.3e-54  Score=407.67  Aligned_cols=218  Identities=28%  Similarity=0.468  Sum_probs=189.2

Q ss_pred             ccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 020527           78 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK  157 (325)
Q Consensus        78 ~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~  157 (325)
                      ..|+++|++++|++.  ..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+..  ++.
T Consensus         2 ~~l~i~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~   77 (356)
T PRK11650          2 AGLKLQAVRKSYDGK--TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRD   77 (356)
T ss_pred             CEEEEEeEEEEeCCC--CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCC
Confidence            358999999999322  3699999999999999999999999999999999999999999999999999776543  478


Q ss_pred             eEEEccCCcCc-cccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 020527          158 IGFVGQEPQLL-QMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA  231 (325)
Q Consensus       158 i~~v~Q~~~l~-~~tv~enl~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra  231 (325)
                      ||||||++.+| .+||+||+.|+... ...    .+++.++++..++.++.++.+         .+|||||||||+||||
T Consensus        78 ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LSgGq~QRvalARA  148 (356)
T PRK11650         78 IAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP---------RELSGGQRQRVAMGRA  148 (356)
T ss_pred             EEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh---------hhCCHHHHHHHHHHHH
Confidence            99999999999 58999999987421 111    233456677777777666655         5799999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhhcC
Q 020527          232 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHKG  310 (325)
Q Consensus       232 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~~  310 (325)
                      |+.+|++||||||||+||+.++..+.+.|+++.++  .|.|+|+||||++++. .||+|++|++|++++.|++++++++.
T Consensus       149 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p  226 (356)
T PRK11650        149 IVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRR--LKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKP  226 (356)
T ss_pred             HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCC
Confidence            99999999999999999999999999999998753  4889999999999885 59999999999999999999998753

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=100.00  E-value=4.6e-53  Score=381.80  Aligned_cols=233  Identities=48%  Similarity=0.755  Sum_probs=200.9

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      ++++|++++|+.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus         1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~   79 (237)
T cd03252           1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG   79 (237)
T ss_pred             CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence            4789999999642 246999999999999999999999999999999999999999999999999887666666778899


Q ss_pred             EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccc--CCCCCChHHHHHHHHHHHHcCCCC
Q 020527          160 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLV--DDDLLSGGQKQRIAIARAILRDPA  237 (325)
Q Consensus       160 ~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~LSgGq~QRv~iAral~~~p~  237 (325)
                      |+||++.+|+.||+||+.++.. ......+....+..++.++++.++.++....  ...+|||||||||+|||||+.+|+
T Consensus        80 ~~~q~~~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~  158 (237)
T cd03252          80 VVLQENVLFNRSIRDNIALADP-GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPR  158 (237)
T ss_pred             EEcCCchhccchHHHHhhccCC-CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCC
Confidence            9999998888899999987532 2234445556666778888888766655433  346899999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHH
Q 020527          238 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV  317 (325)
Q Consensus       238 llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~  317 (325)
                      ++||||||++||+.++..+.+.|+++.    +|+|||++|||++.+..||++++|++|++++.|++++++.....|..++
T Consensus       159 llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~  234 (237)
T cd03252         159 ILIFDEATSALDYESEHAIMRNMHDIC----AGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLY  234 (237)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHhc----CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHHH
Confidence            999999999999999999999999884    2789999999999987799999999999999999999988777776655


Q ss_pred             H
Q 020527          318 K  318 (325)
Q Consensus       318 ~  318 (325)
                      +
T Consensus       235 ~  235 (237)
T cd03252         235 Q  235 (237)
T ss_pred             h
Confidence            4

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=100.00  E-value=1.2e-53  Score=358.84  Aligned_cols=213  Identities=35%  Similarity=0.536  Sum_probs=192.1

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      +.+++|+++|+.     .-=..+++|++||++||+||||||||||+++|+|+..|.+|+|+++|++....++.  ++-++
T Consensus         2 l~L~~V~~~y~~-----~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVS   74 (231)
T COG3840           2 LALDDVRFSYGH-----LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVS   74 (231)
T ss_pred             ccccceEEeeCc-----ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChh
Confidence            678999999964     33578899999999999999999999999999999999999999999998766554  46799


Q ss_pred             EEccCCcCc-cccHHHHHhcCCCCC-----CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 020527          160 FVGQEPQLL-QMDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL  233 (325)
Q Consensus       160 ~v~Q~~~l~-~~tv~enl~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~  233 (325)
                      ++||+.+|| ..||.+|+.+|..+.     ..++.+..++.++++..+.+++|         .+|||||||||+|||+|+
T Consensus        75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP---------~~LSGGqRQRvALARclv  145 (231)
T COG3840          75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP---------GELSGGQRQRVALARCLV  145 (231)
T ss_pred             hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc---------cccCchHHHHHHHHHHHh
Confidence            999999999 689999999986532     23456778899999999999999         579999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhcC
Q 020527          234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG  310 (325)
Q Consensus       234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~  310 (325)
                      ++-+||+||||||+|||.-+.+++.++.+++.+  ++.|++||||.++.+.. +|+++++++|+|.+.|+.++++...
T Consensus       146 R~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E--~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~  221 (231)
T COG3840         146 REQPILLLDEPFSALDPALRAEMLALVSQLCDE--RKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGK  221 (231)
T ss_pred             ccCCeEEecCchhhcCHHHHHHHHHHHHHHHHh--hCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccC
Confidence            999999999999999999999999999999875  58899999999999875 9999999999999999999988753

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=100.00  E-value=1.7e-53  Score=384.24  Aligned_cols=220  Identities=30%  Similarity=0.461  Sum_probs=181.6

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCH---HHHhc
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI---RWLRE  156 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~---~~~r~  156 (325)
                      |+++|++++|++   .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.   ..+++
T Consensus         1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~   77 (235)
T cd03261           1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR   77 (235)
T ss_pred             CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence            478999999964   359999999999999999999999999999999999999999999999999876543   45678


Q ss_pred             ceEEEccCCcCcc-ccHHHHHhcCCCC--CCCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 020527          157 KIGFVGQEPQLLQ-MDIKSNIMYGCPK--DVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA  229 (325)
Q Consensus       157 ~i~~v~Q~~~l~~-~tv~enl~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA  229 (325)
                      .|+|+||++.+|+ .||+||+.++...  .....    .+.++++..++.+..++         ...+|||||||||+||
T Consensus        78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LSgG~~qrv~ia  148 (235)
T cd03261          78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDL---------YPAELSGGMKKRVALA  148 (235)
T ss_pred             ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcC---------ChhhCCHHHHHHHHHH
Confidence            8999999998885 6999999875211  11111    22333444444333322         2357999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527          230 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH  308 (325)
Q Consensus       230 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~  308 (325)
                      |||+.+|++|||||||++||+.++..+.+.|+++.++  .|+|||++|||++.+.. ||++++|++|++++.|+++++..
T Consensus       149 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  226 (235)
T cd03261         149 RALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKE--LGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA  226 (235)
T ss_pred             HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHh--cCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence            9999999999999999999999999999999998652  37899999999998865 99999999999999999998876


Q ss_pred             cCHHH
Q 020527          309 KGRLY  313 (325)
Q Consensus       309 ~~~~~  313 (325)
                      ....|
T Consensus       227 ~~~~~  231 (235)
T cd03261         227 SDDPL  231 (235)
T ss_pred             CCChh
Confidence            44333

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=100.00  E-value=1.2e-52  Score=421.88  Aligned_cols=275  Identities=25%  Similarity=0.311  Sum_probs=219.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEEEEEEEEECCCCCCC
Q 020527           16 SPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTV   95 (325)
Q Consensus        16 t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~   95 (325)
                      +++.+.++..+...+..|+..+...+..++.+..+.+|+.++++.+++...+. ....+ ....|+++||+|+|+++  .
T Consensus       261 ~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~~~-~~~~~-~~~~i~~~~v~f~y~~~--~  336 (547)
T PRK10522        261 DTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEFPR-PQAFP-DWQTLELRNVTFAYQDN--G  336 (547)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc-ccccC-cCceEEEEEEEEEeCCC--C
Confidence            34444445555555678999999999999999999999999876543321111 11111 12359999999999743  3


Q ss_pred             CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHH
Q 020527           96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSN  175 (325)
Q Consensus        96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~en  175 (325)
                      ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+...+|++|+|+||++.+|++|+++|
T Consensus       337 ~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n  416 (547)
T PRK10522        337 FSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE  416 (547)
T ss_pred             eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc
Confidence            69999999999999999999999999999999999999999999999999998888889999999999999999999998


Q ss_pred             HhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHH
Q 020527          176 IMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHY  255 (325)
Q Consensus       176 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~  255 (325)
                         +  ....++.+.++++..++...... +.+.   ..+.+||||||||++||||++++|++||||||||+||+++++.
T Consensus       417 ---~--~~~~~~~~~~~~~~~~l~~~~~~-~~~~---~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~  487 (547)
T PRK10522        417 ---G--KPANPALVEKWLERLKMAHKLEL-EDGR---ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRRE  487 (547)
T ss_pred             ---c--CchHHHHHHHHHHHcCCchhhhc-cccC---CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHH
Confidence               2  12334555555665555443321 1111   1245799999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEE-cChHH
Q 020527          256 VKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEV-GNHAE  305 (325)
Q Consensus       256 i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~-g~~~~  305 (325)
                      +.+.+.+..+.  .++|+|+|||+++.+..||+|++|++|++++. |+..+
T Consensus       488 i~~~l~~~~~~--~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~~~~~~  536 (547)
T PRK10522        488 FYQVLLPLLQE--MGKTIFAISHDDHYFIHADRLLEMRNGQLSELTGEERD  536 (547)
T ss_pred             HHHHHHHHHHh--CCCEEEEEEechHHHHhCCEEEEEECCEEEEecCCchh
Confidence            99988765431  37899999999998888999999999999887 34333

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.4e-53  Score=405.12  Aligned_cols=217  Identities=30%  Similarity=0.500  Sum_probs=187.7

Q ss_pred             cccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhc
Q 020527           77 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE  156 (325)
Q Consensus        77 ~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~  156 (325)
                      |..|+++||+++|++   ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+..  ++
T Consensus         4 ~~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r   78 (351)
T PRK11432          4 KNFVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QR   78 (351)
T ss_pred             CcEEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HC
Confidence            446999999999974   3599999999999999999999999999999999999999999999999999765543  57


Q ss_pred             ceEEEccCCcCc-cccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527          157 KIGFVGQEPQLL-QMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR  230 (325)
Q Consensus       157 ~i~~v~Q~~~l~-~~tv~enl~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr  230 (325)
                      +|||+||++.+| .+||+||+.|+... ...    .+++.++++..++.++.++.+         .+|||||||||+|||
T Consensus        79 ~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~---------~~LSgGq~QRVaLAR  149 (351)
T PRK11432         79 DICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYV---------DQISGGQQQRVALAR  149 (351)
T ss_pred             CEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHHHH
Confidence            899999999999 47999999987421 111    234445566666655555544         679999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhhc
Q 020527          231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK  309 (325)
Q Consensus       231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~  309 (325)
                      ||+.+|++|||||||++||+.++.++.+.|+++.++  .|+|+|+||||++++. .||||++|++|++++.|++++++.+
T Consensus       150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~  227 (351)
T PRK11432        150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQ--FNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ  227 (351)
T ss_pred             HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            999999999999999999999999999999999753  4889999999999985 5999999999999999999999865

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.9e-52  Score=441.73  Aligned_cols=298  Identities=30%  Similarity=0.489  Sum_probs=267.0

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccc--cc-cccccCCcccEEEEEEEEECCC
Q 020527           15 VSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL--SE-GVKLQRLMGHVQFVNISFHYPS   91 (325)
Q Consensus        15 it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~--~~-~~~~~~~~~~i~~~~v~~~y~~   91 (325)
                      ++.|.+-..+.|...+.+.+.-++....++.+...+++|+.++.+.++|....  .. +++.||..+.|+++|++.+|..
T Consensus      1071 ~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp 1150 (1381)
T KOG0054|consen 1071 ISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRP 1150 (1381)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCC
Confidence            67788777888988999988889999999999999999999999987662111  11 2334677789999999999976


Q ss_pred             CCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCcccc
Q 020527           92 RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMD  171 (325)
Q Consensus        92 ~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~t  171 (325)
                      + ...||+||||+|++||++||||+.|||||||+++|.++.+|.+|+|.|||.|+.+++..++|++++.+||||.||++|
T Consensus      1151 ~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGT 1229 (1381)
T KOG0054|consen 1151 N-LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGT 1229 (1381)
T ss_pred             C-CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCc
Confidence            4 357999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCC
Q 020527          172 IKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALD  249 (325)
Q Consensus       172 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~llllDEPts~LD  249 (325)
                      +|.||--.  ....+++++++++++++.+.+.++|.+++..+.+  .++|-||||.+||||||+++++||+|||+||++|
T Consensus      1230 vR~NLDPf--~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD 1307 (1381)
T KOG0054|consen 1230 VRFNLDPF--DEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVD 1307 (1381)
T ss_pred             cccccCcc--cccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCC
Confidence            99999631  2456899999999999999999999999988764  7899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhc-CHHHHHHHHH
Q 020527          250 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK-GRLYAKLVKR  319 (325)
Q Consensus       250 ~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~  319 (325)
                      +++...|++.|++-.+    ++|||.|.|+++.+-.||||+||++|+++|.|+|++++++ ...|++++.+
T Consensus      1308 ~~TD~lIQ~tIR~~F~----dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~~ 1374 (1381)
T KOG0054|consen 1308 PETDALIQKTIREEFK----DCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLKE 1374 (1381)
T ss_pred             hHHHHHHHHHHHHHhc----CCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHHH
Confidence            9999999999998764    6799999999999999999999999999999999999987 5566666554

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=4.5e-53  Score=402.22  Aligned_cols=217  Identities=29%  Similarity=0.452  Sum_probs=186.5

Q ss_pred             ccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 020527           78 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK  157 (325)
Q Consensus        78 ~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~  157 (325)
                      ..|+++||+++|++   ..+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++|+++...++.  ++.
T Consensus         3 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~   77 (353)
T TIGR03265         3 PYLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRD   77 (353)
T ss_pred             cEEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCC
Confidence            35999999999975   3599999999999999999999999999999999999999999999999999765543  578


Q ss_pred             eEEEccCCcCc-cccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 020527          158 IGFVGQEPQLL-QMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA  231 (325)
Q Consensus       158 i~~v~Q~~~l~-~~tv~enl~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra  231 (325)
                      |||+||++.+| .+||+||+.|+... ...    ..++.++++..++.+++++.+         .+|||||||||+||||
T Consensus        78 ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~---------~~LSgGq~QRvaLARa  148 (353)
T TIGR03265        78 YGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYP---------GQLSGGQQQRVALARA  148 (353)
T ss_pred             EEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCCh---------hhCCHHHHHHHHHHHH
Confidence            99999999999 58999999987421 111    223444555555555544444         6799999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhhcC
Q 020527          232 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHKG  310 (325)
Q Consensus       232 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~~  310 (325)
                      |+.+|+++||||||++||+.++..+.+.|+++.++  .|.|+|+||||++++. .||||++|++|++++.|++++++++.
T Consensus       149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~--~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p  226 (353)
T TIGR03265       149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRR--LGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP  226 (353)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence            99999999999999999999999999999998753  4889999999999885 59999999999999999999998753

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=100.00  E-value=1e-52  Score=404.59  Aligned_cols=217  Identities=25%  Similarity=0.432  Sum_probs=188.7

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .|+++|++++|++   +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+++++
T Consensus         3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i   79 (402)
T PRK09536          3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV   79 (402)
T ss_pred             eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence            5899999999975   3699999999999999999999999999999999999999999999999999887777788899


Q ss_pred             EEEccCCcCc-cccHHHHHhcCCCCC---------CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 020527          159 GFVGQEPQLL-QMDIKSNIMYGCPKD---------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI  228 (325)
Q Consensus       159 ~~v~Q~~~l~-~~tv~enl~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i  228 (325)
                      ||++|++.++ .+|++||+.++....         ...+.+.++++.+++.++.++..         .+||||||||++|
T Consensus        80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~---------~~LSgGerQRv~I  150 (402)
T PRK09536         80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV---------TSLSGGERQRVLL  150 (402)
T ss_pred             EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHH
Confidence            9999999875 789999998864211         11223445556666655544432         5799999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHh
Q 020527          229 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELL  307 (325)
Q Consensus       229 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~  307 (325)
                      ||||+++|++|||||||++||+.++..++++|+++.+   +|+|||++|||++.+. .|||+++|++|++++.|++++++
T Consensus       151 ArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~---~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~  227 (402)
T PRK09536        151 ARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD---DGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVL  227 (402)
T ss_pred             HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh---cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence            9999999999999999999999999999999999974   3789999999999996 59999999999999999999988


Q ss_pred             hcC
Q 020527          308 HKG  310 (325)
Q Consensus       308 ~~~  310 (325)
                      +.+
T Consensus       228 ~~~  230 (402)
T PRK09536        228 TAD  230 (402)
T ss_pred             CcH
Confidence            653

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.7e-52  Score=387.18  Aligned_cols=221  Identities=35%  Similarity=0.545  Sum_probs=188.6

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .|+++||+++|++.....+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+...+++++
T Consensus         4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i   83 (279)
T PRK13650          4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI   83 (279)
T ss_pred             eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence            48999999999642223599999999999999999999999999999999999999999999999999766666678899


Q ss_pred             EEEccCCc--CccccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 020527          159 GFVGQEPQ--LLQMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA  231 (325)
Q Consensus       159 ~~v~Q~~~--l~~~tv~enl~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra  231 (325)
                      +|+||++.  ++..||+||+.++... ...    .+.+.++++.+++.++.++.+         .+||||||||++||||
T Consensus        84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LSgGq~qrv~lAra  154 (279)
T PRK13650         84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP---------ARLSGGQKQRVAIAGA  154 (279)
T ss_pred             eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc---------ccCCHHHHHHHHHHHH
Confidence            99999983  4468999999876321 111    233455666667666555544         5799999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcC
Q 020527          232 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG  310 (325)
Q Consensus       232 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~  310 (325)
                      |+.+|++|||||||++||+.++..+.+.|++++++  .|+|||++|||++.+..|||+++|++|+++..|++++++...
T Consensus       155 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~  231 (279)
T PRK13650        155 VAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDD--YQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRG  231 (279)
T ss_pred             HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcCh
Confidence            99999999999999999999999999999999753  488999999999988779999999999999999999887653

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=100.00  E-value=4.9e-52  Score=375.36  Aligned_cols=233  Identities=57%  Similarity=0.911  Sum_probs=197.9

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      ++++|+++.|++..+.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus         1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~   80 (238)
T cd03249           1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG   80 (238)
T ss_pred             CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence            46899999997532246999999999999999999999999999999999999999999999999887666556677899


Q ss_pred             EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCCC
Q 020527          160 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPA  237 (325)
Q Consensus       160 ~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p~  237 (325)
                      |+||++.+++.|++||+.++... ...+......+..++.++++.++.++.+...  ..+|||||||||+|||||+.+|+
T Consensus        81 ~~~q~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~  159 (238)
T cd03249          81 LVSQEPVLFDGTIAENIRYGKPD-ATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPK  159 (238)
T ss_pred             EECCchhhhhhhHHHHhhccCCC-CCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCC
Confidence            99999988888999999886332 2334445556666777887777655544332  46899999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHH
Q 020527          238 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV  317 (325)
Q Consensus       238 llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~  317 (325)
                      ++||||||++||+.+++.+.+.|+++.    +|+|||++||+++.+..||++++|++|++++.|+++++......+++.+
T Consensus       160 llllDEP~~gLD~~~~~~l~~~l~~~~----~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~  235 (238)
T cd03249         160 ILLLDEATSALDAESEKLVQEALDRAM----KGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLV  235 (238)
T ss_pred             EEEEeCccccCCHHHHHHHHHHHHHhc----CCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcChhHHHHh
Confidence            999999999999999999999999884    3789999999999887899999999999999999998877665555554

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=100.00  E-value=4.6e-52  Score=374.46  Aligned_cols=230  Identities=53%  Similarity=0.844  Sum_probs=197.5

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      |+++|++++|+++ ..++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus         1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~   79 (234)
T cd03251           1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG   79 (234)
T ss_pred             CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence            4789999999753 136999999999999999999999999999999999999999999999999987666666778899


Q ss_pred             EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCCC
Q 020527          160 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPA  237 (325)
Q Consensus       160 ~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p~  237 (325)
                      |+||++.+|+.|++||+.++.. ...........+..++.++++.++.++.+...  ...||||||||++|||||+.+|+
T Consensus        80 ~~~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~  158 (234)
T cd03251          80 LVSQDVFLFNDTVAENIAYGRP-GATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPP  158 (234)
T ss_pred             EeCCCCeeccccHHHHhhccCC-CCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence            9999999888899999988643 22334455566667788888887655554333  46899999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHH
Q 020527          238 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAK  315 (325)
Q Consensus       238 llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~  315 (325)
                      ++||||||++||+.++..+.+.|+++.    ++.|||++||+++.+..||++++|++|++++.|+++++......|+.
T Consensus       159 lllLDEP~~~LD~~~~~~l~~~l~~~~----~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~  232 (234)
T cd03251         159 ILILDEATSALDTESERLVQAALERLM----KNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAK  232 (234)
T ss_pred             EEEEeCccccCCHHHHHHHHHHHHHhc----CCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCcchhh
Confidence            999999999999999999999999884    26799999999999877999999999999999999998776655543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=100.00  E-value=2.9e-52  Score=398.92  Aligned_cols=216  Identities=31%  Similarity=0.489  Sum_probs=188.4

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .|+++|++++|++.   .+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++|+++...+..  ++.+
T Consensus        14 ~L~l~~l~~~~~~~---~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i   88 (375)
T PRK09452         14 LVELRGISKSFDGK---EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV   88 (375)
T ss_pred             eEEEEEEEEEECCe---EEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence            59999999999753   599999999999999999999999999999999999999999999999998765543  5789


Q ss_pred             EEEccCCcCc-cccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 020527          159 GFVGQEPQLL-QMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI  232 (325)
Q Consensus       159 ~~v~Q~~~l~-~~tv~enl~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral  232 (325)
                      +|+||++.+| .+||+||+.|+... ...    .+++.++++..++.+++++.+         .+|||||||||+|||||
T Consensus        89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p---------~~LSgGq~QRVaLARaL  159 (375)
T PRK09452         89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP---------HQLSGGQQQRVAIARAV  159 (375)
T ss_pred             EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHHHHHHH
Confidence            9999999998 57999999987421 111    223455666667766666655         57999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhhcC
Q 020527          233 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHKG  310 (325)
Q Consensus       233 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~~  310 (325)
                      +.+|++|||||||++||+.++..+.+.|+++.++  .|.|+|+||||++++. .||+|++|++|++++.|++++++.+.
T Consensus       160 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~--~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p  236 (375)
T PRK09452        160 VNKPKVLLLDESLSALDYKLRKQMQNELKALQRK--LGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP  236 (375)
T ss_pred             hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence            9999999999999999999999999999999763  4889999999999875 59999999999999999999998753

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=100.00  E-value=2.7e-52  Score=396.84  Aligned_cols=215  Identities=30%  Similarity=0.492  Sum_probs=184.8

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .|+++|++++|++.   .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+.  .++.|
T Consensus         2 ~L~i~~l~~~~~~~---~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i   76 (353)
T PRK10851          2 SIEIANIKKSFGRT---QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKV   76 (353)
T ss_pred             EEEEEEEEEEeCCe---EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCE
Confidence            38999999999753   59999999999999999999999999999999999999999999999999876543  35789


Q ss_pred             EEEccCCcCcc-ccHHHHHhcCCCC-----CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 020527          159 GFVGQEPQLLQ-MDIKSNIMYGCPK-----DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI  228 (325)
Q Consensus       159 ~~v~Q~~~l~~-~tv~enl~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i  228 (325)
                      +|+||++.+|+ +||+||+.++...     ...    .+++.++++..++.++.++.+         .+|||||||||+|
T Consensus        77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~LSgGq~QRval  147 (353)
T PRK10851         77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP---------AQLSGGQKQRVAL  147 (353)
T ss_pred             EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHHH
Confidence            99999999985 7999999986421     111    123444555555555544444         6799999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHh
Q 020527          229 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL  307 (325)
Q Consensus       229 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~  307 (325)
                      ||||+.+|++|||||||++||+.++..+.+.|+++.++  .|.|+|+||||++++.. ||||++|++|++++.|++++++
T Consensus       148 ArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~--~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~  225 (353)
T PRK10851        148 ARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEE--LKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVW  225 (353)
T ss_pred             HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            99999999999999999999999999999999999753  47899999999999865 9999999999999999999998


Q ss_pred             hc
Q 020527          308 HK  309 (325)
Q Consensus       308 ~~  309 (325)
                      ++
T Consensus       226 ~~  227 (353)
T PRK10851        226 RE  227 (353)
T ss_pred             hC
Confidence            65

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4e-52  Score=394.92  Aligned_cols=219  Identities=34%  Similarity=0.526  Sum_probs=183.5

Q ss_pred             EEEEEEEEECCCCC-CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHH---HHh
Q 020527           80 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLR  155 (325)
Q Consensus        80 i~~~~v~~~y~~~~-~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~---~~r  155 (325)
                      |+++||+|+|+... .+++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++..++..   .+|
T Consensus         2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~   81 (343)
T PRK11153          2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR   81 (343)
T ss_pred             EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence            78999999997211 24699999999999999999999999999999999999999999999999998776543   346


Q ss_pred             cceEEEccCCcCcc-ccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 020527          156 EKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA  229 (325)
Q Consensus       156 ~~i~~v~Q~~~l~~-~tv~enl~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA  229 (325)
                      ++|+|+||++.+|+ .||+||+.++.. .....    +.+.+.++..++.+..++.+         .+||||||||++||
T Consensus        82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LSgGq~qRv~lA  152 (343)
T PRK11153         82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYP---------AQLSGGQKQRVAIA  152 (343)
T ss_pred             cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHHHH
Confidence            78999999999884 899999987521 11111    22334444445444433332         67999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527          230 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH  308 (325)
Q Consensus       230 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~  308 (325)
                      |||+.+|++|||||||++||+.++..+.+.|+++.++  .|+|||++|||++.+.. ||++++|++|++++.|++++++.
T Consensus       153 raL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~--~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~  230 (343)
T PRK11153        153 RALASNPKVLLCDEATSALDPATTRSILELLKDINRE--LGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS  230 (343)
T ss_pred             HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            9999999999999999999999999999999998653  47899999999999865 99999999999999999999876


Q ss_pred             c
Q 020527          309 K  309 (325)
Q Consensus       309 ~  309 (325)
                      .
T Consensus       231 ~  231 (343)
T PRK11153        231 H  231 (343)
T ss_pred             C
Confidence            4

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.1e-52  Score=374.91  Aligned_cols=218  Identities=35%  Similarity=0.578  Sum_probs=184.6

Q ss_pred             ccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 020527           78 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK  157 (325)
Q Consensus        78 ~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~  157 (325)
                      ..|+++|++++|+++   .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.
T Consensus         2 ~~l~~~~l~~~~~~~---~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   78 (241)
T PRK14250          2 NEIEFKEVSYSSFGK---EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRK   78 (241)
T ss_pred             ceEEEEeEEEEeCCe---eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhc
Confidence            458999999999643   59999999999999999999999999999999999999999999999999876666667788


Q ss_pred             eEEEccCCcCccccHHHHHhcCCCCC-CCHHHHHHHHHHcCHH-HHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 020527          158 IGFVGQEPQLLQMDIKSNIMYGCPKD-VKNEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD  235 (325)
Q Consensus       158 i~~v~Q~~~l~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~  235 (325)
                      ++|+||++.+|+.|++||+.++.... ....++.+.++..++. +..++         ...+||||||||++|||||+.+
T Consensus        79 i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~~LS~G~~qrl~la~al~~~  149 (241)
T PRK14250         79 IGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATR---------DVKNLSGGEAQRVSIARTLANN  149 (241)
T ss_pred             EEEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhC---------CcccCCHHHHHHHHHHHHHhcC
Confidence            99999999988889999998753211 1122333444444442 22222         2367999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhc
Q 020527          236 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK  309 (325)
Q Consensus       236 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~  309 (325)
                      |++|||||||++||+.+++.+.+.|++++++  .|.|||++|||++.+.. ||++++|++|++++.|++++++..
T Consensus       150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  222 (241)
T PRK14250        150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNK--MNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN  222 (241)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--CCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence            9999999999999999999999999998652  37899999999999865 999999999999999999998764

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=100.00  E-value=1.2e-51  Score=372.21  Aligned_cols=233  Identities=51%  Similarity=0.785  Sum_probs=201.5

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      ++++|++++|++.  ..+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.++
T Consensus         1 l~~~~l~~~~~~~--~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~   78 (236)
T cd03253           1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG   78 (236)
T ss_pred             CEEEEEEEEeCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence            4689999999642  35999999999999999999999999999999999999999999999999987766667778899


Q ss_pred             EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCCC
Q 020527          160 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPA  237 (325)
Q Consensus       160 ~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p~  237 (325)
                      |+||++.+|+.|++||+.++.. ......+....+..++.+.++.++.++.+...  ...||||||||++|||||+.+|+
T Consensus        79 ~~~q~~~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~  157 (236)
T cd03253          79 VVPQDTVLFNDTIGYNIRYGRP-DATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPP  157 (236)
T ss_pred             EECCCChhhcchHHHHHhhcCC-CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence            9999999998999999988643 23344455666777888888888766665443  46899999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHH
Q 020527          238 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV  317 (325)
Q Consensus       238 llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~  317 (325)
                      ++||||||++||+.++..+.+.|.+++   + |+|||++||+++.+..||++++|++|++++.|+++++......+..++
T Consensus       158 llllDEP~~~LD~~~~~~l~~~l~~~~---~-~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~~~~  233 (236)
T cd03253         158 ILLLDEATSALDTHTEREIQAALRDVS---K-GRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEMW  233 (236)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHhc---C-CCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHHHHH
Confidence            999999999999999999999999884   2 789999999999987799999999999999999999887666666655


Q ss_pred             HH
Q 020527          318 KR  319 (325)
Q Consensus       318 ~~  319 (325)
                      .+
T Consensus       234 ~~  235 (236)
T cd03253         234 KA  235 (236)
T ss_pred             hc
Confidence            43

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=100.00  E-value=2.5e-52  Score=390.61  Aligned_cols=215  Identities=27%  Similarity=0.444  Sum_probs=179.9

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .++++||+|+|++   ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+ ...+++|
T Consensus         7 ~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i   82 (306)
T PRK13537          7 PIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV   82 (306)
T ss_pred             eEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence            5999999999974   36999999999999999999999999999999999999999999999999986543 4567889


Q ss_pred             EEEccCCcCc-cccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 020527          159 GFVGQEPQLL-QMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI  232 (325)
Q Consensus       159 ~~v~Q~~~l~-~~tv~enl~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral  232 (325)
                      ||+||++.++ .+|++||+.+... .....    .++.++++.+++.+..++         ....||||||||++|||||
T Consensus        83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~qrl~la~aL  153 (306)
T PRK13537         83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADA---------KVGELSGGMKRRLTLARAL  153 (306)
T ss_pred             EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcC---------chhhCCHHHHHHHHHHHHH
Confidence            9999999988 5899999975211 11111    122233333333332222         2257999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhc
Q 020527          233 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK  309 (325)
Q Consensus       233 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~  309 (325)
                      +++|++|||||||+|||+.++..+.++|+++++   +|+|||++||+++++.. ||||++|++|++++.|+++++...
T Consensus       154 ~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~---~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~  228 (306)
T PRK13537        154 VNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA---RGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES  228 (306)
T ss_pred             hCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh---CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence            999999999999999999999999999999964   48899999999999965 999999999999999999998643

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=100.00  E-value=7.2e-53  Score=359.44  Aligned_cols=215  Identities=28%  Similarity=0.471  Sum_probs=189.1

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      +|++.+++++|+..  .++++||||++++||++||+|||||||||+||+|++++.|++|.|+++|.+.... +...|++|
T Consensus         1 Ml~v~~l~K~y~~~--v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~-p~~vrr~I   77 (245)
T COG4555           1 MLEVTDLTKSYGSK--VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRKI   77 (245)
T ss_pred             CeeeeehhhhccCH--HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC-hHHHhhhc
Confidence            37899999999863  4699999999999999999999999999999999999999999999999998764 45678999


Q ss_pred             EEEccCCcCc-cccHHHHHhcC-----CCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 020527          159 GFVGQEPQLL-QMDIKSNIMYG-----CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI  232 (325)
Q Consensus       159 ~~v~Q~~~l~-~~tv~enl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral  232 (325)
                      |.++-+..++ .+|++|||.|.     ......+.++.+..+..++.+.+++..         .++|.|+||||+|||||
T Consensus        78 GVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv---------~~~S~G~kqkV~iARAl  148 (245)
T COG4555          78 GVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRV---------GEFSTGMKQKVAIARAL  148 (245)
T ss_pred             ceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHH---------hhhchhhHHHHHHHHHH
Confidence            9999777787 79999999763     122223455667777788888777644         46999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhh
Q 020527          233 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLH  308 (325)
Q Consensus       233 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~  308 (325)
                      +++|++++|||||||||..+.+.+.+.+.++++   .|++||++||.|++++ .||||+++++|+++..|+++++..
T Consensus       149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~---egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~  222 (245)
T COG4555         149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN---EGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDA  222 (245)
T ss_pred             hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc---CCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence            999999999999999999999999999999975   4899999999999997 599999999999999999998864

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.6e-52  Score=384.72  Aligned_cols=220  Identities=31%  Similarity=0.522  Sum_probs=181.1

Q ss_pred             cEEEEEEEEECCCCC--CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCC--HHHH
Q 020527           79 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD--IRWL  154 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~--~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~--~~~~  154 (325)
                      .|+++||+++|+...  .+++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+  ...+
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~   81 (287)
T PRK13637          2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI   81 (287)
T ss_pred             EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence            389999999997421  136999999999999999999999999999999999999999999999999987643  3456


Q ss_pred             hcceEEEccCC--cCccccHHHHHhcCCCC-CCCHH----HHHHHHHHcCHH--HHHHhCCCCcccccCCCCCChHHHHH
Q 020527          155 REKIGFVGQEP--QLLQMDIKSNIMYGCPK-DVKNE----DIEWAAKQAYVH--EFILSLPCGYETLVDDDLLSGGQKQR  225 (325)
Q Consensus       155 r~~i~~v~Q~~--~l~~~tv~enl~~~~~~-~~~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~LSgGq~QR  225 (325)
                      +++|||+||++  .+|+.||+||+.++... ....+    .+.++++.+++.  ++.         .....+||||||||
T Consensus        82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~---------~~~~~~LSgGq~qr  152 (287)
T PRK13637         82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYK---------DKSPFELSGGQKRR  152 (287)
T ss_pred             hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhc---------cCCcccCCHHHHHH
Confidence            78999999998  45678999999875211 11222    223333333332  111         22236799999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChH
Q 020527          226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA  304 (325)
Q Consensus       226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~  304 (325)
                      ++|||||+.+|++|||||||++||+.++..+.++|++++++  .|+|||++|||++.+. .||||++|++|++++.|+++
T Consensus       153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~--~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~  230 (287)
T PRK13637        153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKE--YNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPR  230 (287)
T ss_pred             HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence            99999999999999999999999999999999999999753  4789999999999885 59999999999999999999


Q ss_pred             HHhhc
Q 020527          305 ELLHK  309 (325)
Q Consensus       305 ~l~~~  309 (325)
                      ++++.
T Consensus       231 ~~~~~  235 (287)
T PRK13637        231 EVFKE  235 (287)
T ss_pred             HHHhC
Confidence            88653

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=100.00  E-value=1.5e-51  Score=369.99  Aligned_cols=224  Identities=48%  Similarity=0.794  Sum_probs=195.0

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .|+++|++++|++.  +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus         2 ~l~~~~l~~~~~~~--~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i   79 (229)
T cd03254           2 EIEFENVNFSYDEK--KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI   79 (229)
T ss_pred             eEEEEEEEEecCCC--CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence            48999999999642  3599999999999999999999999999999999999999999999999998766666678889


Q ss_pred             EEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCC
Q 020527          159 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDP  236 (325)
Q Consensus       159 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p  236 (325)
                      +|+||++.+|+.|++||+.+... ......+..+++..++.+++++++.++.+...  ..+|||||||||+|||||+.+|
T Consensus        80 ~~~~q~~~~~~~tv~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p  158 (229)
T cd03254          80 GVVLQDTFLFSGTIMENIRLGRP-NATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP  158 (229)
T ss_pred             EEecCCchhhhhHHHHHHhccCC-CCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence            99999999887899999987632 22345566667777888888887766554433  3689999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhc
Q 020527          237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK  309 (325)
Q Consensus       237 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~  309 (325)
                      +++||||||++||+.+++.+.+.|.++.    +++|||++||+++.+..||++++|++|++++.|+.+++.+.
T Consensus       159 ~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~  227 (229)
T cd03254         159 KILILDEATSNIDTETEKLIQEALEKLM----KGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK  227 (229)
T ss_pred             CEEEEeCccccCCHHHHHHHHHHHHHhc----CCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence            9999999999999999999999999884    37899999999998877999999999999999988877643

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=100.00  E-value=5.3e-52  Score=375.53  Aligned_cols=215  Identities=35%  Similarity=0.540  Sum_probs=178.2

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCC---HHHHhc
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD---IRWLRE  156 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~---~~~~r~  156 (325)
                      ++++||+++|+++  .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+   ...+++
T Consensus         1 l~~~~l~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~   78 (241)
T cd03256           1 IEVENLSKTYPNG--KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR   78 (241)
T ss_pred             CEEeeEEEecCCc--cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence            4689999999751  35999999999999999999999999999999999999999999999999987655   345677


Q ss_pred             ceEEEccCCcCcc-ccHHHHHhcCCCCC----------CC---HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHH
Q 020527          157 KIGFVGQEPQLLQ-MDIKSNIMYGCPKD----------VK---NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ  222 (325)
Q Consensus       157 ~i~~v~Q~~~l~~-~tv~enl~~~~~~~----------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq  222 (325)
                      .++|+||++.+|+ .||+||+.++....          ..   .+.+.++++..++.+..++         ...+|||||
T Consensus        79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~  149 (241)
T cd03256          79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQ---------RADQLSGGQ  149 (241)
T ss_pred             ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCC---------CcccCCHHH
Confidence            8999999998875 79999998652110          00   1122233334443332222         236799999


Q ss_pred             HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEc
Q 020527          223 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVG  301 (325)
Q Consensus       223 ~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g  301 (325)
                      |||++|||||+.+|++|||||||++||+.++..+.+.|+++.++  .|+|||++|||++.+. .||++++|++|++++.|
T Consensus       150 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~  227 (241)
T cd03256         150 QQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINRE--EGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG  227 (241)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence            99999999999999999999999999999999999999998652  3789999999999987 59999999999999999


Q ss_pred             ChHHHh
Q 020527          302 NHAELL  307 (325)
Q Consensus       302 ~~~~l~  307 (325)
                      +++++.
T Consensus       228 ~~~~~~  233 (241)
T cd03256         228 PPAELT  233 (241)
T ss_pred             CHHHhh
Confidence            998864

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=100.00  E-value=2.9e-52  Score=397.44  Aligned_cols=215  Identities=28%  Similarity=0.459  Sum_probs=184.7

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCC--CeEEECCEeCCCCCHHHHhc
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD--GQIYIDGFPLTDLDIRWLRE  156 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~--G~I~i~g~~i~~~~~~~~r~  156 (325)
                      .|+++||+++|++.   .+|+|+||+|++||+++|+|||||||||||++|+|+++|++  |+|.++|+++...+.  .++
T Consensus         5 ~l~~~~l~~~~~~~---~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~r   79 (362)
T TIGR03258         5 GIRIDHLRVAYGAN---TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HKR   79 (362)
T ss_pred             EEEEEEEEEEECCe---EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HHC
Confidence            58999999999753   59999999999999999999999999999999999999999  999999999876544  357


Q ss_pred             ceEEEccCCcCc-cccHHHHHhcCCCC-CCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527          157 KIGFVGQEPQLL-QMDIKSNIMYGCPK-DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR  230 (325)
Q Consensus       157 ~i~~v~Q~~~l~-~~tv~enl~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr  230 (325)
                      .|+|+||++.+| .+||+||+.|+... ....    .++.++++..++.++.++.+         .+|||||||||+|||
T Consensus        80 ~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~---------~~LSgGq~QRvaLAR  150 (362)
T TIGR03258        80 GLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP---------AQLSGGMQQRIAIAR  150 (362)
T ss_pred             CEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh---------hhCCHHHHHHHHHHH
Confidence            899999999998 57999999986421 1111    23444555555555554444         679999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCC-CeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhh
Q 020527          231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKT-KRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLH  308 (325)
Q Consensus       231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~-g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~  308 (325)
                      ||+.+|++|||||||++||+.++..+.+.|+++.++  . |.|+|+||||++++. .||||++|++|++++.|++++++.
T Consensus       151 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~--~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~  228 (362)
T TIGR03258       151 AIAIEPDVLLLDEPLSALDANIRANMREEIAALHEE--LPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD  228 (362)
T ss_pred             HHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHh--CCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            999999999999999999999999999999998753  3 789999999999985 499999999999999999999987


Q ss_pred             c
Q 020527          309 K  309 (325)
Q Consensus       309 ~  309 (325)
                      .
T Consensus       229 ~  229 (362)
T TIGR03258       229 A  229 (362)
T ss_pred             C
Confidence            5

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=100.00  E-value=3.1e-52  Score=371.31  Aligned_cols=205  Identities=35%  Similarity=0.560  Sum_probs=171.6

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHH---HHhc
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLRE  156 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~---~~r~  156 (325)
                      |+++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+..   .+++
T Consensus         2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~   80 (216)
T TIGR00960         2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR   80 (216)
T ss_pred             eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence            7899999999642 13599999999999999999999999999999999999999999999999988655432   3577


Q ss_pred             ceEEEccCCcCcc-ccHHHHHhcCCCC-CC----CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527          157 KIGFVGQEPQLLQ-MDIKSNIMYGCPK-DV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR  230 (325)
Q Consensus       157 ~i~~v~Q~~~l~~-~tv~enl~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr  230 (325)
                      .++|+||++.+|+ .|++||+.++... ..    ..+++.++++..++.+..++.+         .+||||||||++|||
T Consensus        81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~lar  151 (216)
T TIGR00960        81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP---------MQLSGGEQQRVAIAR  151 (216)
T ss_pred             hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh---------hhCCHHHHHHHHHHH
Confidence            8999999998884 7999999864210 11    1223444555555555444433         579999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEE
Q 020527          231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI  297 (325)
Q Consensus       231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i  297 (325)
                      ||+.+|++|||||||++||+.+++.+.+.|+++++   .|+|||++|||++.+.. ||++++|++|++
T Consensus       152 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~vsH~~~~~~~~~d~i~~l~~G~i  216 (216)
T TIGR00960       152 AIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR---RGTTVLVATHDINLVETYRHRTLTLSRGRL  216 (216)
T ss_pred             HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            99999999999999999999999999999999864   37899999999999865 999999999974

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.4e-52  Score=384.18  Aligned_cols=218  Identities=25%  Similarity=0.468  Sum_probs=180.3

Q ss_pred             EEEEEEEEECCCCCC--CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCC----CCHHH
Q 020527           80 VQFVNISFHYPSRPT--VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD----LDIRW  153 (325)
Q Consensus        80 i~~~~v~~~y~~~~~--~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~----~~~~~  153 (325)
                      |+++||+|+|+....  +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..    .....
T Consensus         2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   81 (288)
T PRK13643          2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP   81 (288)
T ss_pred             EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence            899999999974211  259999999999999999999999999999999999999999999999999853    22455


Q ss_pred             HhcceEEEccCC--cCccccHHHHHhcCCCC-CCCHH----HHHHHHHHcCHH-HHHHhCCCCcccccCCCCCChHHHHH
Q 020527          154 LREKIGFVGQEP--QLLQMDIKSNIMYGCPK-DVKNE----DIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQR  225 (325)
Q Consensus       154 ~r~~i~~v~Q~~--~l~~~tv~enl~~~~~~-~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~LSgGq~QR  225 (325)
                      +++.+||+||++  .+|..||+||+.|+... .....    .+.++++.+++. ++.+         .....||||||||
T Consensus        82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~---------~~~~~LSgGqkqr  152 (288)
T PRK13643         82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWE---------KSPFELSGGQMRR  152 (288)
T ss_pred             HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhcc---------CCcccCCHHHHHH
Confidence            778999999998  67788999999886321 11111    223334444442 2222         2236799999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChH
Q 020527          226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA  304 (325)
Q Consensus       226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~  304 (325)
                      ++|||||+.+|++|||||||++||+.++..+.+.|+++++   +|.|||++|||++.+. .||||++|++|++++.|+++
T Consensus       153 vaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~---~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~  229 (288)
T PRK13643        153 VAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ---SGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPS  229 (288)
T ss_pred             HHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH---CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence            9999999999999999999999999999999999999864   3789999999999885 59999999999999999999


Q ss_pred             HHhhc
Q 020527          305 ELLHK  309 (325)
Q Consensus       305 ~l~~~  309 (325)
                      +++..
T Consensus       230 ~~~~~  234 (288)
T PRK13643        230 DVFQE  234 (288)
T ss_pred             HHHcC
Confidence            98754

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.2e-52  Score=396.93  Aligned_cols=216  Identities=30%  Similarity=0.480  Sum_probs=184.2

Q ss_pred             ccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 020527           78 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK  157 (325)
Q Consensus        78 ~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~  157 (325)
                      ..|+++|++++|+++   .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.  .++.
T Consensus         2 ~~l~i~~l~~~~~~~---~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~   76 (369)
T PRK11000          2 ASVTLRNVTKAYGDV---VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERG   76 (369)
T ss_pred             CEEEEEEEEEEeCCe---EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCC
Confidence            358999999999753   59999999999999999999999999999999999999999999999999876544  2467


Q ss_pred             eEEEccCCcCc-cccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 020527          158 IGFVGQEPQLL-QMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA  231 (325)
Q Consensus       158 i~~v~Q~~~l~-~~tv~enl~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra  231 (325)
                      |+|+||++.+| .+||+||+.++... ...    .+++.++++..++.++.++.+         .+|||||||||+||||
T Consensus        77 i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~---------~~LSgGq~QRvaLAra  147 (369)
T PRK11000         77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP---------KALSGGQRQRVAIGRT  147 (369)
T ss_pred             EEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh---------hhCCHHHHHHHHHHHH
Confidence            99999999998 47999999886321 111    123444555555555444443         5799999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhhc
Q 020527          232 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK  309 (325)
Q Consensus       232 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~  309 (325)
                      |+.+|++|||||||++||+.+++.+.+.|+++.++  .|.|+|+||||++++. .||++++|++|++++.|++++++..
T Consensus       148 L~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~--~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~  224 (369)
T PRK11000        148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR--LGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY  224 (369)
T ss_pred             HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH--hCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            99999999999999999999999999999998753  4789999999999886 4999999999999999999998764

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9.2e-52  Score=381.35  Aligned_cols=214  Identities=29%  Similarity=0.506  Sum_probs=183.3

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .|+++|++++|++.  .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+...++++|
T Consensus         4 ~l~~~~l~~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i   81 (274)
T PRK13647          4 IIEVEDLHFRYKDG--TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV   81 (274)
T ss_pred             eEEEEEEEEEeCCC--CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence            48999999999632  3599999999999999999999999999999999999999999999999998776666777889


Q ss_pred             EEEccCC--cCccccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 020527          159 GFVGQEP--QLLQMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA  231 (325)
Q Consensus       159 ~~v~Q~~--~l~~~tv~enl~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra  231 (325)
                      +|+||++  .++..||+||+.++... ...    .+.+..+++.+++.+..++.+         .+||||||||++||||
T Consensus        82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~LSgG~~qrv~lara  152 (274)
T PRK13647         82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP---------YHLSYGQKKRVAIAGV  152 (274)
T ss_pred             EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh---------hhCCHHHHHHHHHHHH
Confidence            9999998  45678999999875311 111    123445556666655555444         5799999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHH
Q 020527          232 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAEL  306 (325)
Q Consensus       232 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l  306 (325)
                      |+.+|++|||||||++||+.++..+.+.|+++++   +|+|||++|||++.+. .|||+++|++|++++.|+++++
T Consensus       153 L~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  225 (274)
T PRK13647        153 LAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN---QGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL  225 (274)
T ss_pred             HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence            9999999999999999999999999999999964   3789999999999985 5999999999999999998754

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8e-52  Score=384.70  Aligned_cols=221  Identities=28%  Similarity=0.447  Sum_probs=181.3

Q ss_pred             cEEEEEEEEECCCCC--CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCC----CCHH
Q 020527           79 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD----LDIR  152 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~--~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~----~~~~  152 (325)
                      .++++||+++|++..  ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..    ....
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~   81 (290)
T PRK13634          2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK   81 (290)
T ss_pred             EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence            389999999996421  1369999999999999999999999999999999999999999999999999853    2344


Q ss_pred             HHhcceEEEccCC--cCccccHHHHHhcCCCC-CCCHH----HHHHHHHHcCHH-HHHHhCCCCcccccCCCCCChHHHH
Q 020527          153 WLREKIGFVGQEP--QLLQMDIKSNIMYGCPK-DVKNE----DIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQ  224 (325)
Q Consensus       153 ~~r~~i~~v~Q~~--~l~~~tv~enl~~~~~~-~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~LSgGq~Q  224 (325)
                      ..++.|||+||++  .+|+.||+||+.++... .....    .+.++++.+++. .+.++         ...+|||||||
T Consensus        82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~---------~~~~LSgGq~q  152 (290)
T PRK13634         82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLAR---------SPFELSGGQMR  152 (290)
T ss_pred             HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhC---------CcccCCHHHHH
Confidence            5677899999997  56778999999876311 11121    223334444442 22222         23679999999


Q ss_pred             HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcCh
Q 020527          225 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNH  303 (325)
Q Consensus       225 Rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~  303 (325)
                      ||+|||||+.+|++|||||||++||+.++..+.++|++++++  .|.|||++|||++.+. .||||++|++|++++.|++
T Consensus       153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~--~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~  230 (290)
T PRK13634        153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKE--KGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTP  230 (290)
T ss_pred             HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence            999999999999999999999999999999999999999653  4789999999999986 5999999999999999999


Q ss_pred             HHHhhcC
Q 020527          304 AELLHKG  310 (325)
Q Consensus       304 ~~l~~~~  310 (325)
                      ++++...
T Consensus       231 ~~~~~~~  237 (290)
T PRK13634        231 REIFADP  237 (290)
T ss_pred             HHHhcCH
Confidence            9886543

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=100.00  E-value=1.1e-51  Score=373.45  Aligned_cols=215  Identities=32%  Similarity=0.502  Sum_probs=180.0

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .|+++||+++|++   .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.  .++++
T Consensus         2 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i   76 (239)
T cd03296           2 SIEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNV   76 (239)
T ss_pred             EEEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccce
Confidence            4899999999975   359999999999999999999999999999999999999999999999998865432  25679


Q ss_pred             EEEccCCcCc-cccHHHHHhcCCCCC-C----CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 020527          159 GFVGQEPQLL-QMDIKSNIMYGCPKD-V----KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI  228 (325)
Q Consensus       159 ~~v~Q~~~l~-~~tv~enl~~~~~~~-~----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i  228 (325)
                      +|+||++.+| ..||+||+.++.... .    ..    +.+.++++..++.+..++.+         .+||||||||++|
T Consensus        77 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~l  147 (239)
T cd03296          77 GFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP---------AQLSGGQRQRVAL  147 (239)
T ss_pred             EEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh---------hhCCHHHHHHHHH
Confidence            9999999888 479999998753111 0    11    12233444445444433332         5799999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHh
Q 020527          229 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL  307 (325)
Q Consensus       229 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~  307 (325)
                      ||||+.+|++|||||||++||+.+++.+.+.|.+++++  .|+|||++|||++.+.. ||++++|++|++++.|+++++.
T Consensus       148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  225 (239)
T cd03296         148 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDE--LHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVY  225 (239)
T ss_pred             HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHh
Confidence            99999999999999999999999999999999998652  37899999999998764 9999999999999999999987


Q ss_pred             hc
Q 020527          308 HK  309 (325)
Q Consensus       308 ~~  309 (325)
                      +.
T Consensus       226 ~~  227 (239)
T cd03296         226 DH  227 (239)
T ss_pred             cC
Confidence            54

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.2e-51  Score=387.93  Aligned_cols=224  Identities=29%  Similarity=0.461  Sum_probs=181.3

Q ss_pred             cEEEEEEEEECCCCC--CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCC-------
Q 020527           79 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL-------  149 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~--~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~-------  149 (325)
                      .|+++|++|+|++..  ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++...       
T Consensus        21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~  100 (320)
T PRK13631         21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI  100 (320)
T ss_pred             eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence            499999999997421  13599999999999999999999999999999999999999999999999988542       


Q ss_pred             ---------CHHHHhcceEEEccCC--cCccccHHHHHhcCCCC-CCCHHHHHHHHHHcCHHHHHHhCCCC-cccccCCC
Q 020527          150 ---------DIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCPK-DVKNEDIEWAAKQAYVHEFILSLPCG-YETLVDDD  216 (325)
Q Consensus       150 ---------~~~~~r~~i~~v~Q~~--~l~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  216 (325)
                               ....+|++|+|+||++  .+|+.||+||+.++... ....+...   +  .+.++++.+... ........
T Consensus       101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~---~--~~~~~l~~~gL~~~~~~~~~~  175 (320)
T PRK13631        101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAK---K--LAKFYLNKMGLDDSYLERSPF  175 (320)
T ss_pred             ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHH---H--HHHHHHHHcCCChhHhcCCcc
Confidence                     2345788999999998  57788999999886311 11222111   1  112333433321 11122346


Q ss_pred             CCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCC
Q 020527          217 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDG  295 (325)
Q Consensus       217 ~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G  295 (325)
                      +||||||||++|||||+.+|++|||||||++||+.++..+.+.|.++.+   +|+|||+||||++.+. .||||++|++|
T Consensus       176 ~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~---~g~TiiivtHd~~~~~~~adri~vl~~G  252 (320)
T PRK13631        176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA---NNKTVFVITHTMEHVLEVADEVIVMDKG  252 (320)
T ss_pred             cCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH---CCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence            7999999999999999999999999999999999999999999999864   3789999999999875 59999999999


Q ss_pred             EEEEEcChHHHhhcC
Q 020527          296 RIIEVGNHAELLHKG  310 (325)
Q Consensus       296 ~i~~~g~~~~l~~~~  310 (325)
                      ++++.|++++++...
T Consensus       253 ~i~~~g~~~~~~~~~  267 (320)
T PRK13631        253 KILKTGTPYEIFTDQ  267 (320)
T ss_pred             EEEEeCCHHHHhcCH
Confidence            999999999886543

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=6.6e-52  Score=385.04  Aligned_cols=216  Identities=31%  Similarity=0.517  Sum_probs=184.0

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .++++||+++|+.+  +.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+...- ....+++|
T Consensus         4 ~i~~~~l~k~~~~~--~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i   80 (293)
T COG1131           4 VIEVRNLTKKYGGD--KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI   80 (293)
T ss_pred             eeeecceEEEeCCC--CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence            48899999999831  3699999999999999999999999999999999999999999999999998654 56678899


Q ss_pred             EEEccCCcCc-cccHHHHHhcCCC-C----CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 020527          159 GFVGQEPQLL-QMDIKSNIMYGCP-K----DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI  232 (325)
Q Consensus       159 ~~v~Q~~~l~-~~tv~enl~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral  232 (325)
                      ||+||++.++ .+|++||+.|... .    ....+.+.+.++.+++.+..         ......||+|||||++||+||
T Consensus        81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~---------~~~~~~lS~G~kqrl~ia~aL  151 (293)
T COG1131          81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA---------NKKVRTLSGGMKQRLSIALAL  151 (293)
T ss_pred             EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh---------CcchhhcCHHHHHHHHHHHHH
Confidence            9999999987 5899999976321 1    11234555666666655422         111257999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527          233 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH  308 (325)
Q Consensus       233 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~  308 (325)
                      +.+|+++||||||+||||.++..+.++|++++++  .++||+++||.++.+.. ||+|++|++|+++..|+++++..
T Consensus       152 ~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~--g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~  226 (293)
T COG1131         152 LHDPELLILDEPTSGLDPESRREIWELLRELAKE--GGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE  226 (293)
T ss_pred             hcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhC--CCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence            9999999999999999999999999999999864  24899999999999976 99999999999999999988754

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=9.7e-52  Score=374.39  Aligned_cols=215  Identities=34%  Similarity=0.494  Sum_probs=178.6

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCH---HHHhc
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI---RWLRE  156 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~---~~~r~  156 (325)
                      |+++||+++|+.+  .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.   ..+++
T Consensus         2 l~~~~l~~~~~~~--~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~   79 (243)
T TIGR02315         2 LEVENLSKVYPNG--KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR   79 (243)
T ss_pred             eEEEeeeeecCCC--cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence            7899999999721  369999999999999999999999999999999999999999999999999865543   23577


Q ss_pred             ceEEEccCCcCc-cccHHHHHhcCCCCC-------------CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHH
Q 020527          157 KIGFVGQEPQLL-QMDIKSNIMYGCPKD-------------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ  222 (325)
Q Consensus       157 ~i~~v~Q~~~l~-~~tv~enl~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq  222 (325)
                      .++|+||++.+| ..|++||+.++....             ...+++.++++..++.+.+++.         ..+|||||
T Consensus        80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LSgG~  150 (243)
T TIGR02315        80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR---------ADQLSGGQ  150 (243)
T ss_pred             heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC---------cccCCHHH
Confidence            899999999887 479999998753210             0011233344444444433332         25799999


Q ss_pred             HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEc
Q 020527          223 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVG  301 (325)
Q Consensus       223 ~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g  301 (325)
                      |||++|||||+.+|++|||||||++||+.++..+.+.|+++.++  .|+|+|++|||++.+. .||++++|++|++++.|
T Consensus       151 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~  228 (243)
T TIGR02315       151 QQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKE--DGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG  228 (243)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence            99999999999999999999999999999999999999998652  3789999999999985 59999999999999999


Q ss_pred             ChHHHh
Q 020527          302 NHAELL  307 (325)
Q Consensus       302 ~~~~l~  307 (325)
                      +++++.
T Consensus       229 ~~~~~~  234 (243)
T TIGR02315       229 APSELD  234 (243)
T ss_pred             CHHHhC
Confidence            998863

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=100.00  E-value=6.2e-52  Score=372.13  Aligned_cols=212  Identities=33%  Similarity=0.561  Sum_probs=176.7

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCC-----CCCCCeEEECCEeCCCCC--HH
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY-----EPSDGQIYIDGFPLTDLD--IR  152 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~-----~~~~G~I~i~g~~i~~~~--~~  152 (325)
                      |+++||+++|+++   ++|+|+||+|++||+++|+||||||||||+++|+|++     +|++|+|.++|+++...+  ..
T Consensus         1 i~~~~l~~~~~~~---~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~   77 (227)
T cd03260           1 IELRDLNVYYGDK---HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL   77 (227)
T ss_pred             CEEEEEEEEcCCc---eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence            4789999999753   5999999999999999999999999999999999999     999999999999987655  44


Q ss_pred             HHhcceEEEccCCcCccccHHHHHhcCCCCC-C-C----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHH
Q 020527          153 WLREKIGFVGQEPQLLQMDIKSNIMYGCPKD-V-K----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI  226 (325)
Q Consensus       153 ~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~-~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv  226 (325)
                      .++++++|+||++.+|..||+||+.++.... . .    .+.+.++++..++.+...+.+       ...+||||||||+
T Consensus        78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-------~~~~LSgG~~qrv  150 (227)
T cd03260          78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRL-------HALGLSGGQQQRL  150 (227)
T ss_pred             HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccC-------CcccCCHHHHHHH
Confidence            5678899999999888889999998752111 1 1    122334444444444333221       0257999999999


Q ss_pred             HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHH
Q 020527          227 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAE  305 (325)
Q Consensus       227 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~  305 (325)
                      +|||||+.+|++|||||||++||+.++..+.+.|+++++   + +|||++|||++.+. .||++++|++|++++.|++++
T Consensus       151 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~  226 (227)
T cd03260         151 CLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK---E-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ  226 (227)
T ss_pred             HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh---C-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence            999999999999999999999999999999999999864   3 79999999999886 499999999999999998765

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.7e-52  Score=396.16  Aligned_cols=217  Identities=27%  Similarity=0.471  Sum_probs=184.7

Q ss_pred             ccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 020527           78 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK  157 (325)
Q Consensus        78 ~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~  157 (325)
                      ..|+++|++++|++   ..+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++|+++...+.  .++.
T Consensus        18 ~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~   92 (377)
T PRK11607         18 PLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRP   92 (377)
T ss_pred             ceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence            35999999999974   359999999999999999999999999999999999999999999999999876543  3678


Q ss_pred             eEEEccCCcCc-cccHHHHHhcCCCC-CCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 020527          158 IGFVGQEPQLL-QMDIKSNIMYGCPK-DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA  231 (325)
Q Consensus       158 i~~v~Q~~~l~-~~tv~enl~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra  231 (325)
                      |||+||++.+| .+||+||+.|+... ....    +++.+.++..++.++.++.+         .+|||||||||+||||
T Consensus        93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~---------~~LSgGq~QRVaLARA  163 (377)
T PRK11607         93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP---------HQLSGGQRQRVALARS  163 (377)
T ss_pred             EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHHHHH
Confidence            99999999999 47999999987421 1111    22334444445544444433         6799999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhhcC
Q 020527          232 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHKG  310 (325)
Q Consensus       232 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~~  310 (325)
                      |+.+|++|||||||++||+..+..+.+.++++.++  .|.|+|+||||++++. .|||+++|++|++++.|++++++.+.
T Consensus       164 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p  241 (377)
T PRK11607        164 LAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILER--VGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP  241 (377)
T ss_pred             HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence            99999999999999999999999999999988653  4789999999999875 59999999999999999999998753

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.1e-51  Score=382.97  Aligned_cols=224  Identities=29%  Similarity=0.524  Sum_probs=180.6

Q ss_pred             EEEEEEEEECCCCC--CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCC----CHHH
Q 020527           80 VQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL----DIRW  153 (325)
Q Consensus        80 i~~~~v~~~y~~~~--~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~----~~~~  153 (325)
                      ++++||+++|+++.  .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...    +...
T Consensus         3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   82 (286)
T PRK13646          3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP   82 (286)
T ss_pred             EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence            89999999996421  13699999999999999999999999999999999999999999999999998643    2345


Q ss_pred             HhcceEEEccCC--cCccccHHHHHhcCCCC-CCCHHHHHHHHHHcCHHHHHHhCCCC-cccccCCCCCChHHHHHHHHH
Q 020527          154 LREKIGFVGQEP--QLLQMDIKSNIMYGCPK-DVKNEDIEWAAKQAYVHEFILSLPCG-YETLVDDDLLSGGQKQRIAIA  229 (325)
Q Consensus       154 ~r~~i~~v~Q~~--~l~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~LSgGq~QRv~iA  229 (325)
                      +|++|||+||++  .+|+.|++||+.++... .........     .+.++++.+... ........+||||||||++||
T Consensus        83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~la  157 (286)
T PRK13646         83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKN-----YAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIV  157 (286)
T ss_pred             HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHH-----HHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHH
Confidence            788999999997  46778999999875211 112211111     122333333221 011122467999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhh
Q 020527          230 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLH  308 (325)
Q Consensus       230 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~  308 (325)
                      |||+.+|++|||||||++||+.++..+.+++++++++  .|+|||++|||++.+. .||||++|++|++++.|++++++.
T Consensus       158 raL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~  235 (286)
T PRK13646        158 SILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTD--ENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK  235 (286)
T ss_pred             HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh--CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            9999999999999999999999999999999999652  4789999999999885 599999999999999999998876


Q ss_pred             cC
Q 020527          309 KG  310 (325)
Q Consensus       309 ~~  310 (325)
                      ..
T Consensus       236 ~~  237 (286)
T PRK13646        236 DK  237 (286)
T ss_pred             CH
Confidence            53

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=100.00  E-value=1.1e-51  Score=368.99  Aligned_cols=212  Identities=26%  Similarity=0.422  Sum_probs=178.1

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      |+++|++++|+++   ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++
T Consensus         1 i~~~~~~~~~~~~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~   76 (220)
T cd03265           1 IEVENLVKKYGDF---EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG   76 (220)
T ss_pred             CEEEEEEEEECCE---EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence            4789999999753   599999999999999999999999999999999999999999999999987642 345677899


Q ss_pred             EEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 020527          160 FVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL  233 (325)
Q Consensus       160 ~v~Q~~~l~~-~tv~enl~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~  233 (325)
                      |+||++.+++ .|++||+.++.. ....    .+.+.+.++..++.+..++.+         .+||||||||++||||++
T Consensus        77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qr~~la~al~  147 (220)
T cd03265          77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLV---------KTYSGGMRRRLEIARSLV  147 (220)
T ss_pred             EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh---------hhCCHHHHHHHHHHHHHh
Confidence            9999998874 799999976421 0111    223445555566655444433         579999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHH
Q 020527          234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL  306 (325)
Q Consensus       234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l  306 (325)
                      .+|+++||||||++||+.+++.+.+.|.++.++  .|+|||++|||++.+.. |||+++|++|++++.++++++
T Consensus       148 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  219 (220)
T cd03265         148 HRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEE--FGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL  219 (220)
T ss_pred             cCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence            999999999999999999999999999998753  37899999999999865 999999999999999887753

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=100.00  E-value=9e-52  Score=373.05  Aligned_cols=224  Identities=26%  Similarity=0.434  Sum_probs=178.2

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHH-hcce
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REKI  158 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~-r~~i  158 (325)
                      |+++|++++|++   .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ ++.+
T Consensus         1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i   77 (236)
T cd03219           1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI   77 (236)
T ss_pred             CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence            468999999974   359999999999999999999999999999999999999999999999999877665443 5679


Q ss_pred             EEEccCCcCcc-ccHHHHHhcCCCCCCCHHH------HHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 020527          159 GFVGQEPQLLQ-MDIKSNIMYGCPKDVKNED------IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA  231 (325)
Q Consensus       159 ~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra  231 (325)
                      +|+||++.+|+ .||+||+.++.........      .........+.++++.+...........+||||||||++||||
T Consensus        78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~a  157 (236)
T cd03219          78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARA  157 (236)
T ss_pred             EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHH
Confidence            99999999885 6999999875321100000      0000001122334444332211122236799999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhc
Q 020527          232 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK  309 (325)
Q Consensus       232 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~  309 (325)
                      |+.+|+++||||||++||+.++..+.+.|+++++   +|+|+|++|||++.+.. ||++++|++|++++.|+++++.+.
T Consensus       158 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  233 (236)
T cd03219         158 LATDPKLLLLDEPAAGLNPEETEELAELIRELRE---RGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNN  233 (236)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhccC
Confidence            9999999999999999999999999999999864   37899999999999865 999999999999999999887653

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=100.00  E-value=8.8e-51  Score=371.53  Aligned_cols=238  Identities=32%  Similarity=0.533  Sum_probs=206.0

Q ss_pred             CcccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHh
Q 020527           76 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR  155 (325)
Q Consensus        76 ~~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r  155 (325)
                      .++.|+++|++++|+.. ...+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+...++
T Consensus        16 ~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~   94 (257)
T cd03288          16 LGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR   94 (257)
T ss_pred             CCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence            45679999999999753 24699999999999999999999999999999999999999999999999998877766778


Q ss_pred             cceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHc
Q 020527          156 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAIL  233 (325)
Q Consensus       156 ~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~  233 (325)
                      +.|+|+||++.+|+.|++||+....  ......+..+.+..++.++++.++.++++...  ..+|||||+||++|||||+
T Consensus        95 ~~i~~v~q~~~l~~~tv~~nl~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~  172 (257)
T cd03288          95 SRLSIILQDPILFSGSIRFNLDPEC--KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFV  172 (257)
T ss_pred             hhEEEECCCCcccccHHHHhcCcCC--CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHh
Confidence            8999999999988889999987531  12244556677777888888888777766554  3689999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhc-CHH
Q 020527          234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK-GRL  312 (325)
Q Consensus       234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~  312 (325)
                      .+|++|||||||++||+.++..+.+.++++.    +++|+|++||+++.+..|||+++|++|++++.|+++++... ...
T Consensus       173 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~----~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~  248 (257)
T cd03288         173 RKSSILIMDEATASIDMATENILQKVVMTAF----ADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGV  248 (257)
T ss_pred             cCCCEEEEeCCccCCCHHHHHHHHHHHHHhc----CCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchH
Confidence            9999999999999999999999999998873    36899999999999877999999999999999999998765 456


Q ss_pred             HHHHHHHh
Q 020527          313 YAKLVKRQ  320 (325)
Q Consensus       313 ~~~~~~~~  320 (325)
                      |++++..+
T Consensus       249 ~~~~~~~~  256 (257)
T cd03288         249 FASLVRTD  256 (257)
T ss_pred             HHHHHhcc
Confidence            77777653

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.6e-51  Score=379.28  Aligned_cols=219  Identities=34%  Similarity=0.560  Sum_probs=187.0

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .++++||+++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.|
T Consensus         5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i   83 (279)
T PRK13635          5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV   83 (279)
T ss_pred             eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence            48999999999642 24699999999999999999999999999999999999999999999999999776666677889


Q ss_pred             EEEccCCc--CccccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 020527          159 GFVGQEPQ--LLQMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA  231 (325)
Q Consensus       159 ~~v~Q~~~--l~~~tv~enl~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra  231 (325)
                      +|+||++.  ++..||+||+.++... ...    .+.+.++++..++.+++++.+         ..||||||||++||||
T Consensus        84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LS~G~~qrv~lara  154 (279)
T PRK13635         84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP---------HRLSGGQKQRVAIAGV  154 (279)
T ss_pred             EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc---------ccCCHHHHHHHHHHHH
Confidence            99999983  4478999999875211 111    123455566666666655544         5799999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhc
Q 020527          232 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK  309 (325)
Q Consensus       232 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~  309 (325)
                      |+.+|++|||||||++||+.++..+.+.|+++.++  .|.|||++|||++.+..||++++|++|++++.|+++++...
T Consensus       155 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~--~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  230 (279)
T PRK13635        155 LALQPDIIILDEATSMLDPRGRREVLETVRQLKEQ--KGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS  230 (279)
T ss_pred             HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence            99999999999999999999999999999999753  37899999999998877999999999999999999887654

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=100.00  E-value=5.3e-52  Score=395.04  Aligned_cols=208  Identities=38%  Similarity=0.508  Sum_probs=179.9

Q ss_pred             ECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHH----hcceEEEcc
Q 020527           88 HYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL----REKIGFVGQ  163 (325)
Q Consensus        88 ~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~----r~~i~~v~Q  163 (325)
                      +|++   +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+...+    |+.|+|+||
T Consensus         2 ~~~~---~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q   78 (363)
T TIGR01186         2 KTGG---KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQ   78 (363)
T ss_pred             ccCC---ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEEC
Confidence            4554   359999999999999999999999999999999999999999999999999988777665    678999999


Q ss_pred             CCcCcc-ccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC
Q 020527          164 EPQLLQ-MDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA  237 (325)
Q Consensus       164 ~~~l~~-~tv~enl~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~  237 (325)
                      ++.+|+ +||+||+.++... ...    .+++.++++.++++.+.++.+         .+|||||||||+|||||+.+|+
T Consensus        79 ~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p---------~~LSGGq~QRV~lARAL~~~p~  149 (363)
T TIGR01186        79 QFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYP---------DELSGGMQQRVGLARALAAEPD  149 (363)
T ss_pred             CCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCCh---------hhCCHHHHHHHHHHHHHhcCCC
Confidence            999995 7999999875321 111    233455666666666655555         5799999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhhc
Q 020527          238 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK  309 (325)
Q Consensus       238 llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~  309 (325)
                      +|||||||++||+.++..+.+.+.+++++  .|+|||+||||++++. .||||++|++|++++.|++++++.+
T Consensus       150 iLLlDEP~saLD~~~r~~l~~~l~~l~~~--~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~  220 (363)
T TIGR01186       150 ILLMDEAFSALDPLIRDSMQDELKKLQAT--LQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN  220 (363)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence            99999999999999999999999999653  4789999999999875 5999999999999999999998765

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.6e-51  Score=378.02  Aligned_cols=219  Identities=29%  Similarity=0.486  Sum_probs=185.2

Q ss_pred             ccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 020527           78 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK  157 (325)
Q Consensus        78 ~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~  157 (325)
                      ..++++|++++|++.  ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...++++
T Consensus         2 ~~l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~   79 (277)
T PRK13652          2 HLIETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKF   79 (277)
T ss_pred             ceEEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhh
Confidence            358999999999642  359999999999999999999999999999999999999999999999999876555667788


Q ss_pred             eEEEccCCc--CccccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527          158 IGFVGQEPQ--LLQMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR  230 (325)
Q Consensus       158 i~~v~Q~~~--l~~~tv~enl~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr  230 (325)
                      ++|+||++.  ++..||+||+.++.. .....    +.+.++++..++.+.+++.+         ..||||||||++|||
T Consensus        80 i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~Gq~qrl~lar  150 (277)
T PRK13652         80 VGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP---------HHLSGGEKKRVAIAG  150 (277)
T ss_pred             eEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc---------ccCCHHHHHHHHHHH
Confidence            999999984  567899999986421 11122    22344555555555544443         579999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhhc
Q 020527          231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK  309 (325)
Q Consensus       231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~  309 (325)
                      ||+.+|++|||||||++||+.++..+.+.++++.++  .|.|||++||+++.+. .|||+++|++|++++.|++++++..
T Consensus       151 aL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~--~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  228 (277)
T PRK13652        151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPET--YGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ  228 (277)
T ss_pred             HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence            999999999999999999999999999999998753  3789999999999985 5999999999999999999998754

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=100.00  E-value=8.1e-52  Score=367.90  Aligned_cols=206  Identities=35%  Similarity=0.563  Sum_probs=171.7

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      ++++|++++|++   +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.  .+++++
T Consensus         1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~   75 (213)
T cd03259           1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIG   75 (213)
T ss_pred             CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEE
Confidence            468999999964   369999999999999999999999999999999999999999999999999865432  357899


Q ss_pred             EEccCCcCc-cccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 020527          160 FVGQEPQLL-QMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL  233 (325)
Q Consensus       160 ~v~Q~~~l~-~~tv~enl~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~  233 (325)
                      |+||++.++ ..|++||+.++... ...    .+.+.++++..++.+..++.+         .+||||||||++|||||+
T Consensus        76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrl~la~al~  146 (213)
T cd03259          76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYP---------HELSGGQQQRVALARALA  146 (213)
T ss_pred             EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCh---------hhCCHHHHHHHHHHHHHh
Confidence            999999887 57999999864211 111    122334445555544444333         579999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEc
Q 020527          234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG  301 (325)
Q Consensus       234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g  301 (325)
                      .+|++|||||||++||+.++..+.+.|.+++++  .|+|||++|||++.+.. ||++++|++|++++.|
T Consensus       147 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g  213 (213)
T cd03259         147 REPSLLLLDEPLSALDAKLREELREELKELQRE--LGITTIYVTHDQEEALALADRIAVMNEGRIVQVG  213 (213)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH--cCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence            999999999999999999999999999998652  37899999999998865 9999999999998754

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.1e-51  Score=384.04  Aligned_cols=220  Identities=27%  Similarity=0.435  Sum_probs=181.0

Q ss_pred             cEEEEEEEEECCCCC--CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCC--------
Q 020527           79 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD--------  148 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~--~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~--------  148 (325)
                      .|+++||+++|+++.  ...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..        
T Consensus         2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~   81 (305)
T PRK13651          2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE   81 (305)
T ss_pred             EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence            489999999997431  1259999999999999999999999999999999999999999999999876531        


Q ss_pred             ----------------CCHHHHhcceEEEccCC--cCccccHHHHHhcCCCC-CCCH----HHHHHHHHHcCHH-HHHHh
Q 020527          149 ----------------LDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCPK-DVKN----EDIEWAAKQAYVH-EFILS  204 (325)
Q Consensus       149 ----------------~~~~~~r~~i~~v~Q~~--~l~~~tv~enl~~~~~~-~~~~----~~~~~~~~~~~~~-~~~~~  204 (325)
                                      .....++++|||+||+|  .+|..||+||+.|+... ....    +++.++++.+++. ++.++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~  161 (305)
T PRK13651         82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR  161 (305)
T ss_pred             ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence                            12345678899999986  56778999999886321 1122    2234444444543 33333


Q ss_pred             CCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH
Q 020527          205 LPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK  284 (325)
Q Consensus       205 ~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~  284 (325)
                      .         ..+||||||||++|||||+.+|++|||||||++||+.++..+.+.|+++++   .|+|||+||||++.+.
T Consensus       162 ~---------~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tiiivtHd~~~~~  229 (305)
T PRK13651        162 S---------PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK---QGKTIILVTHDLDNVL  229 (305)
T ss_pred             C---------hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeeCHHHHH
Confidence            2         367999999999999999999999999999999999999999999999974   4889999999999875


Q ss_pred             -hcCEEEEEeCCEEEEEcChHHHhhcC
Q 020527          285 -AVDRIVVIDDGRIIEVGNHAELLHKG  310 (325)
Q Consensus       285 -~~d~v~~l~~G~i~~~g~~~~l~~~~  310 (325)
                       .||||++|++|++++.|++++++...
T Consensus       230 ~~adrv~vl~~G~i~~~g~~~~~~~~~  256 (305)
T PRK13651        230 EWTKRTIFFKDGKIIKDGDTYDILSDN  256 (305)
T ss_pred             HhCCEEEEEECCEEEEECCHHHHhcCH
Confidence             59999999999999999999987653

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=100.00  E-value=1.7e-51  Score=389.61  Aligned_cols=214  Identities=27%  Similarity=0.459  Sum_probs=178.8

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .|+++||+++|+++   .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.... ...++.|
T Consensus        41 ~i~i~nl~k~y~~~---~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i  116 (340)
T PRK13536         41 AIDLAGVSKSYGDK---AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI  116 (340)
T ss_pred             eEEEEEEEEEECCE---EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence            59999999999753   5999999999999999999999999999999999999999999999999986543 4567889


Q ss_pred             EEEccCCcCc-cccHHHHHhcCC-CCCCCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 020527          159 GFVGQEPQLL-QMDIKSNIMYGC-PKDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI  232 (325)
Q Consensus       159 ~~v~Q~~~l~-~~tv~enl~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral  232 (325)
                      ||+||++.++ ..|++||+.+.. .......    .+.++++.+++.+..         .....+||||||||++|||||
T Consensus       117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~---------~~~~~~LS~G~kqrv~lA~aL  187 (340)
T PRK13536        117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA---------DARVSDLSGGMKRRLTLARAL  187 (340)
T ss_pred             EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh---------CCChhhCCHHHHHHHHHHHHH
Confidence            9999999887 689999997521 1111111    122223333332222         222357999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527          233 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH  308 (325)
Q Consensus       233 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~  308 (325)
                      +.+|++|||||||+|||+.++..+.++|+++++   .|+|||++||+++.+.. ||||++|++|+++..|+++++.+
T Consensus       188 ~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~---~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~  261 (340)
T PRK13536        188 INDPQLLILDEPTTGLDPHARHLIWERLRSLLA---RGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID  261 (340)
T ss_pred             hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            999999999999999999999999999999964   38899999999999965 99999999999999999999864

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=100.00  E-value=2.4e-51  Score=369.75  Aligned_cols=218  Identities=32%  Similarity=0.499  Sum_probs=181.2

Q ss_pred             EEEEEEEEECCCCC-CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHH---HHh
Q 020527           80 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLR  155 (325)
Q Consensus        80 i~~~~v~~~y~~~~-~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~---~~r  155 (325)
                      |+++|++++|+++. ..++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..   ..+
T Consensus         2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (233)
T cd03258           2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR   81 (233)
T ss_pred             eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence            78999999997531 12699999999999999999999999999999999999999999999999998765432   346


Q ss_pred             cceEEEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 020527          156 EKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA  229 (325)
Q Consensus       156 ~~i~~v~Q~~~l~~-~tv~enl~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA  229 (325)
                      +.++|+||++.+|+ .|++||+.++.. ....    .+.+.++++..++.+..++.+         .+||||||||++||
T Consensus        82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la  152 (233)
T cd03258          82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYP---------AQLSGGQKQRVGIA  152 (233)
T ss_pred             hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcCh---------hhCCHHHHHHHHHH
Confidence            78999999999885 799999976421 1111    122334455555544443333         57999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527          230 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH  308 (325)
Q Consensus       230 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~  308 (325)
                      |||+.+|+++||||||++||+.++..+.+.|++++++  .|+|||++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus       153 ~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  230 (233)
T cd03258         153 RALANNPKVLLCDEATSALDPETTQSILALLRDINRE--LGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA  230 (233)
T ss_pred             HHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence            9999999999999999999999999999999998653  37899999999999865 99999999999999999888754

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=100.00  E-value=3.3e-51  Score=386.48  Aligned_cols=226  Identities=29%  Similarity=0.439  Sum_probs=185.2

Q ss_pred             cEEEEEEEEECCCCC----------CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCC
Q 020527           79 HVQFVNISFHYPSRP----------TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD  148 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~----------~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~  148 (325)
                      .|+++||+++|+...          ...+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|+++..
T Consensus         8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~   87 (331)
T PRK15079          8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG   87 (331)
T ss_pred             eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence            499999999996311          2469999999999999999999999999999999999999999999999999987


Q ss_pred             CCHH---HHhcceEEEccCC--cCc-cccHHHHHhcCCCC---CCCHH----HHHHHHHHcCH-HHHHHhCCCCcccccC
Q 020527          149 LDIR---WLREKIGFVGQEP--QLL-QMDIKSNIMYGCPK---DVKNE----DIEWAAKQAYV-HEFILSLPCGYETLVD  214 (325)
Q Consensus       149 ~~~~---~~r~~i~~v~Q~~--~l~-~~tv~enl~~~~~~---~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~  214 (325)
                      .+..   .+|++|+||||++  .++ .+||.||+.++...   ....+    .+.+.++.+++ .+.+++.         
T Consensus        88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~---------  158 (331)
T PRK15079         88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRY---------  158 (331)
T ss_pred             CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCC---------
Confidence            6543   3567899999998  466 58999999753210   11221    22334444444 2233333         


Q ss_pred             CCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEe
Q 020527          215 DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID  293 (325)
Q Consensus       215 ~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~  293 (325)
                      +.+|||||||||+|||||+.+|++||+||||++||+.++.+++++|++++++  .|.|+|+||||++.+.. ||||++|+
T Consensus       159 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~--~~~til~iTHdl~~~~~~~dri~vl~  236 (331)
T PRK15079        159 PHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQRE--MGLSLIFIAHDLAVVKHISDRVLVMY  236 (331)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            3679999999999999999999999999999999999999999999999753  47899999999999975 99999999


Q ss_pred             CCEEEEEcChHHHhhc-CHHHHH
Q 020527          294 DGRIIEVGNHAELLHK-GRLYAK  315 (325)
Q Consensus       294 ~G~i~~~g~~~~l~~~-~~~~~~  315 (325)
                      +|++++.|++++++++ ...|.+
T Consensus       237 ~G~ive~g~~~~i~~~~~~py~~  259 (331)
T PRK15079        237 LGHAVELGTYDEVYHNPLHPYTK  259 (331)
T ss_pred             CCEEEEEcCHHHHHcCCCCHHHH
Confidence            9999999999999865 334544

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.8e-51  Score=378.90  Aligned_cols=218  Identities=28%  Similarity=0.495  Sum_probs=182.9

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCC--CCCHHHHhc
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT--DLDIRWLRE  156 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~--~~~~~~~r~  156 (325)
                      .|+++|++++|++.  +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.  ..+...+++
T Consensus         5 ~l~~~~l~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~   82 (283)
T PRK13636          5 ILKVEELNYNYSDG--THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE   82 (283)
T ss_pred             eEEEEeEEEEeCCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence            48999999999632  36999999999999999999999999999999999999999999999999984  223456778


Q ss_pred             ceEEEccCC--cCccccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 020527          157 KIGFVGQEP--QLLQMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA  229 (325)
Q Consensus       157 ~i~~v~Q~~--~l~~~tv~enl~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA  229 (325)
                      .++|+||++  .+++.|++||+.++... ...    .+.+..+++..++.++.++.         ..+||||||||++||
T Consensus        83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~---------~~~LS~G~~qrl~la  153 (283)
T PRK13636         83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKP---------THCLSFGQKKRVAIA  153 (283)
T ss_pred             hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCC---------cccCCHHHHHHHHHH
Confidence            999999998  45678999999874211 111    12334455555555444333         267999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhh
Q 020527          230 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLH  308 (325)
Q Consensus       230 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~  308 (325)
                      |||+.+|++|||||||++||+.++..+.+.|+++.++  .|+|||++|||++.+. .|||+++|++|++++.|+++++++
T Consensus       154 raL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~--~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~  231 (283)
T PRK13636        154 GVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKE--LGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA  231 (283)
T ss_pred             HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh--CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            9999999999999999999999999999999998753  3789999999999986 599999999999999999998876


Q ss_pred             c
Q 020527          309 K  309 (325)
Q Consensus       309 ~  309 (325)
                      .
T Consensus       232 ~  232 (283)
T PRK13636        232 E  232 (283)
T ss_pred             C
Confidence            4

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=100.00  E-value=3.4e-51  Score=365.88  Aligned_cols=214  Identities=29%  Similarity=0.462  Sum_probs=175.7

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHH-Hhcce
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREKI  158 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~-~r~~i  158 (325)
                      |+++||+++|++.   ++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus         1 l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i   77 (222)
T cd03224           1 LEVENLNAGYGKS---QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI   77 (222)
T ss_pred             CEEeeEEeecCCe---eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence            4789999999753   5999999999999999999999999999999999999999999999999987665544 35679


Q ss_pred             EEEccCCcCcc-ccHHHHHhcCCCCCCC---HHHHHHHHHHc-CHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 020527          159 GFVGQEPQLLQ-MDIKSNIMYGCPKDVK---NEDIEWAAKQA-YVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL  233 (325)
Q Consensus       159 ~~v~Q~~~l~~-~tv~enl~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~  233 (325)
                      +|+||++.+|+ .|++||+.++......   .+.+...++.. ++.+..++         ...+||||||||++|||||+
T Consensus        78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~---------~~~~LS~G~~qrv~laral~  148 (222)
T cd03224          78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQ---------LAGTLSGGEQQMLAIARALM  148 (222)
T ss_pred             EEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhC---------chhhCCHHHHHHHHHHHHHh
Confidence            99999998885 6999999875321111   11122222222 12222221         22579999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527          234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH  308 (325)
Q Consensus       234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~  308 (325)
                      .+|++|||||||++||+.++..+.+.|+++++   .|+|+|++|||++.+.. ||++++|++|++++.|+++++..
T Consensus       149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  221 (222)
T cd03224         149 SRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD---EGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA  221 (222)
T ss_pred             cCCCEEEECCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence            99999999999999999999999999999864   37899999999998865 99999999999999998887643

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=100.00  E-value=8.3e-51  Score=363.26  Aligned_cols=217  Identities=38%  Similarity=0.617  Sum_probs=192.3

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .|+++|++++|++. .+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus         2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i   80 (221)
T cd03244           2 DIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI   80 (221)
T ss_pred             cEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence            48899999999743 24699999999999999999999999999999999999999999999999998777767778899


Q ss_pred             EEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCC
Q 020527          159 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDP  236 (325)
Q Consensus       159 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p  236 (325)
                      +|+||++.+++.|++||+.+..  ....+++.++++..++.+++.+++.++.+...  ...||||||||++|||||+.+|
T Consensus        81 ~~~~q~~~l~~~tv~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p  158 (221)
T cd03244          81 SIIPQDPVLFSGTIRSNLDPFG--EYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS  158 (221)
T ss_pred             EEECCCCccccchHHHHhCcCC--CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC
Confidence            9999999988889999997642  23455667778888888888888777776554  4689999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcC
Q 020527          237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGN  302 (325)
Q Consensus       237 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~  302 (325)
                      +++||||||++||+.++..+.+.|+++.+    +.|+|++||+++.+..||++++|++|++++.|+
T Consensus       159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~----~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~  220 (221)
T cd03244         159 KILVLDEATASVDPETDALIQKTIREAFK----DCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS  220 (221)
T ss_pred             CEEEEeCccccCCHHHHHHHHHHHHHhcC----CCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence            99999999999999999999999998842    579999999999987799999999999998775

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=7.7e-51  Score=355.04  Aligned_cols=226  Identities=27%  Similarity=0.438  Sum_probs=187.7

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHH-Hhcc
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK  157 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~-~r~~  157 (325)
                      +++++||+..|+.   .++|++|||++++||+++|+||||||||||||+|+|+.+|.+|+|.|+|+|+...++.+ .|..
T Consensus         3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G   79 (237)
T COG0410           3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG   79 (237)
T ss_pred             ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence            5899999999975   36999999999999999999999999999999999999999999999999999987764 4778


Q ss_pred             eEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCC-cccccCCCCCChHHHHHHHHHHHHcCC
Q 020527          158 IGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCG-YETLVDDDLLSGGQKQRIAIARAILRD  235 (325)
Q Consensus       158 i~~v~Q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~LSgGq~QRv~iAral~~~  235 (325)
                      |+||||...+| .+||+||+.+|......+..     ....+++..+.+|.- ........+|||||||.++|||||+.+
T Consensus        80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~-----~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~  154 (237)
T COG0410          80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEA-----QERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSR  154 (237)
T ss_pred             eEeCcccccchhhCcHHHHHhhhhhccccccc-----ccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence            99999999999 68999999987432111111     001123333333310 111112367999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhhcCHHHH
Q 020527          236 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHKGRLYA  314 (325)
Q Consensus       236 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~  314 (325)
                      |++|+|||||.||-|.-.++|.+.+++++++  .|.||++|-++...+. .+||.++|++|+|+.+|+.+++.+++..-+
T Consensus       155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~--~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~~v~~  232 (237)
T COG0410         155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKE--GGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPDVRE  232 (237)
T ss_pred             CCEEEecCCccCcCHHHHHHHHHHHHHHHHc--CCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCHHHHH
Confidence            9999999999999999999999999999863  4789999999999885 599999999999999999999988765443

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=4.4e-53  Score=360.37  Aligned_cols=228  Identities=25%  Similarity=0.451  Sum_probs=186.9

Q ss_pred             cccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHH-Hh
Q 020527           77 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LR  155 (325)
Q Consensus        77 ~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~-~r  155 (325)
                      |..+.++|+.|+|+++   +++++|||+|++||+++++|||||||||.+.++.|+.+|++|+|.+||.+++.++... .|
T Consensus         2 ~~~L~a~~l~K~y~kr---~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RAr   78 (243)
T COG1137           2 MSTLVAENLAKSYKKR---KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRAR   78 (243)
T ss_pred             CcEEEehhhhHhhCCe---eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhh
Confidence            4568999999999764   6999999999999999999999999999999999999999999999999999888653 46


Q ss_pred             cceEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 020527          156 EKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR  234 (325)
Q Consensus       156 ~~i~~v~Q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~  234 (325)
                      ..|||+||++.+| .+||+|||+.......  .......++..++++++.+............||||||+|+.|||||+.
T Consensus        79 lGigYLpQE~SIFr~LtV~dNi~~vlE~~~--~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~  156 (243)
T COG1137          79 LGIGYLPQEASIFRKLTVEDNIMAVLEIRE--KDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAA  156 (243)
T ss_pred             cCcccccccchHhhcCcHHHHHHHHHhhhh--cchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhc
Confidence            6799999999999 5899999975421111  001111222223333433332222222235799999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHH-HhcCEEEEEeCCEEEEEcChHHHhhcCHH
Q 020527          235 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELLHKGRL  312 (325)
Q Consensus       235 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~l~~~~~~  312 (325)
                      +|+.+||||||||+||.+...|.++++.++.   .|..|+++-|+..+. ..|||.+++.+|++..+|+|+++.+++..
T Consensus       157 ~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~---rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~~V  232 (243)
T COG1137         157 NPKFILLDEPFAGVDPIAVIDIQRIIKHLKD---RGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNEDV  232 (243)
T ss_pred             CCCEEEecCCccCCCchhHHHHHHHHHHHHh---CCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcChhh
Confidence            9999999999999999999999999999975   589999999999765 66999999999999999999999987643

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.3e-51  Score=368.27  Aligned_cols=213  Identities=31%  Similarity=0.430  Sum_probs=175.0

Q ss_pred             cEEEEEEEEECCCCC-CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHH---H
Q 020527           79 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW---L  154 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~-~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~---~  154 (325)
                      .++++||+++|+++. ..++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+...   +
T Consensus         5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~   84 (233)
T PRK11629          5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL   84 (233)
T ss_pred             eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence            489999999997421 136999999999999999999999999999999999999999999999999987765432   3


Q ss_pred             h-cceEEEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 020527          155 R-EKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA  227 (325)
Q Consensus       155 r-~~i~~v~Q~~~l~~-~tv~enl~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~  227 (325)
                      + +.++|+||++.+|+ .|++||+.++.. ....    .+++.++++..++.+..++.         ..+||||||||++
T Consensus        85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~---------~~~LSgG~~qrl~  155 (233)
T PRK11629         85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHR---------PSELSGGERQRVA  155 (233)
T ss_pred             HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCC---------hhhCCHHHHHHHH
Confidence            3 67999999998885 699999976421 0111    12233444444444333322         2579999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcC
Q 020527          228 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGN  302 (325)
Q Consensus       228 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~  302 (325)
                      ||||++.+|++|||||||++||+.++..+.+.|++++++  .|+|||++|||++.+..+|++++|++|++++.++
T Consensus       156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~  228 (233)
T PRK11629        156 IARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRL--QGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS  228 (233)
T ss_pred             HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence            999999999999999999999999999999999998642  4789999999999988888999999999998765

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=100.00  E-value=1.2e-50  Score=362.00  Aligned_cols=217  Identities=45%  Similarity=0.713  Sum_probs=187.4

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .|+++|++++|+++ .+.+++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus         2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i   80 (220)
T cd03245           2 RIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI   80 (220)
T ss_pred             eEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence            47899999999642 24699999999999999999999999999999999999999999999999988765555567789


Q ss_pred             EEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCC
Q 020527          159 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDP  236 (325)
Q Consensus       159 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p  236 (325)
                      +|+||++.+|+.|++||+.++.. ......+.+.++..++.+.++..+.++.+...  ..+||||||||++||||++.+|
T Consensus        81 ~~~~q~~~~~~~tv~e~l~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p  159 (220)
T cd03245          81 GYVPQDVTLFYGTLRDNITLGAP-LADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDP  159 (220)
T ss_pred             EEeCCCCccccchHHHHhhcCCC-CCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence            99999999888899999987532 22344566677788888888887766655443  3579999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEc
Q 020527          237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG  301 (325)
Q Consensus       237 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g  301 (325)
                      ++|||||||++||+.++..+.+.|+++++    ++|||++|||++.+..||++++|++|++++.|
T Consensus       160 ~llllDEPt~~LD~~~~~~l~~~l~~~~~----~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~  220 (220)
T cd03245         160 PILLLDEPTSAMDMNSEERLKERLRQLLG----DKTLIIITHRPSLLDLVDRIIVMDSGRIVADG  220 (220)
T ss_pred             CEEEEeCccccCCHHHHHHHHHHHHHhcC----CCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence            99999999999999999999999999853    37999999999987779999999999997653

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=100.00  E-value=3.7e-50  Score=440.98  Aligned_cols=297  Identities=22%  Similarity=0.340  Sum_probs=250.1

Q ss_pred             ehHHHHhc--CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccC-CcccEE
Q 020527            5 LGGMSIMI--GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQR-LMGHVQ   81 (325)
Q Consensus         5 ~g~~~v~~--g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~i~   81 (325)
                      +++|.+..  +.++.+.+++.+.++..+..|+..+...+..+.++..+.+|+.++++.+++............ ....++
T Consensus       559 f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~  638 (1522)
T TIGR00957       559 FAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSIT  638 (1522)
T ss_pred             HHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccccCCCCCCcEE
Confidence            34566664  568899988888888889999999999999999999999999999987543211000001111 112599


Q ss_pred             EEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 020527           82 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV  161 (325)
Q Consensus        82 ~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v  161 (325)
                      ++|++|+|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|             +|+|+
T Consensus       639 ~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~yv  704 (1522)
T TIGR00957       639 VHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVAYV  704 (1522)
T ss_pred             EEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-------------EEEEE
Confidence            99999999753 24699999999999999999999999999999999999999999999987             49999


Q ss_pred             ccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEE
Q 020527          162 GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAIL  239 (325)
Q Consensus       162 ~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~ll  239 (325)
                      ||+|.+|++||+|||.+|..  ..+++..++.+.+++.+.++.+|.|+++.++.  .+||||||||++||||++++|+++
T Consensus       705 ~Q~~~l~~~Ti~eNI~~g~~--~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~il  782 (1522)
T TIGR00957       705 PQQAWIQNDSLRENILFGKA--LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIY  782 (1522)
T ss_pred             cCCccccCCcHHHHhhcCCc--cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence            99999999999999999843  33455667778888888899999999887764  689999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHH
Q 020527          240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK  318 (325)
Q Consensus       240 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~  318 (325)
                      |||||||+||+.+++.+.+.+.+.... .+++|+|+|||+++.+..||+|++|++|++++.|+++++.++.+.|.+++.
T Consensus       783 lLDEp~saLD~~~~~~i~~~l~~~~~~-~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~  860 (1522)
T TIGR00957       783 LFDDPLSAVDAHVGKHIFEHVIGPEGV-LKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLR  860 (1522)
T ss_pred             EEcCCccccCHHHHHHHHHHHhhhhhh-hcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcchhHHHHHH
Confidence            999999999999999999988653211 246899999999999988999999999999999999999987777877765

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=100.00  E-value=4e-51  Score=382.29  Aligned_cols=214  Identities=29%  Similarity=0.457  Sum_probs=178.5

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .|+++|++++|++   ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ....++++
T Consensus         4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i   79 (303)
T TIGR01288         4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI   79 (303)
T ss_pred             EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence            4899999999975   3599999999999999999999999999999999999999999999999988643 34567889


Q ss_pred             EEEccCCcCc-cccHHHHHhcCCC-CCCCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 020527          159 GFVGQEPQLL-QMDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI  232 (325)
Q Consensus       159 ~~v~Q~~~l~-~~tv~enl~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral  232 (325)
                      ||+||++.++ ..|++||+.+... ......    .+.++++..++.+..++.         ..+||||||||++|||||
T Consensus        80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~---------~~~LSgG~~qrv~la~al  150 (303)
T TIGR01288        80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVR---------VALLSGGMKRRLTLARAL  150 (303)
T ss_pred             EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCc---------hhhCCHHHHHHHHHHHHH
Confidence            9999999887 5899999974211 111111    122333334443332222         257999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527          233 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH  308 (325)
Q Consensus       233 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~  308 (325)
                      +.+|++|||||||+|||+.++..+.+.|+++++   +|+|||++|||++.+.. ||++++|++|+++..|+++++..
T Consensus       151 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~---~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  224 (303)
T TIGR01288       151 INDPQLLILDEPTTGLDPHARHLIWERLRSLLA---RGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID  224 (303)
T ss_pred             hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh---CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            999999999999999999999999999999864   37899999999999865 99999999999999999998864

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.2e-51  Score=378.23  Aligned_cols=219  Identities=28%  Similarity=0.482  Sum_probs=179.1

Q ss_pred             cEEEEEEEEECCCCC--CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCC----CHH
Q 020527           79 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL----DIR  152 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~--~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~----~~~  152 (325)
                      .|+++|++++|++..  .+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...    +..
T Consensus         2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~   81 (287)
T PRK13641          2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK   81 (287)
T ss_pred             EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence            489999999997421  13599999999999999999999999999999999999999999999999988542    234


Q ss_pred             HHhcceEEEccCC--cCccccHHHHHhcCCC-CCCCHH----HHHHHHHHcCHH-HHHHhCCCCcccccCCCCCChHHHH
Q 020527          153 WLREKIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQ  224 (325)
Q Consensus       153 ~~r~~i~~v~Q~~--~l~~~tv~enl~~~~~-~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~LSgGq~Q  224 (325)
                      ..++.|+|+||++  .+|+.|++||+.++.. .....+    .+.++++.+++. ++.++         ...+|||||||
T Consensus        82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~---------~~~~LSgGq~q  152 (287)
T PRK13641         82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISK---------SPFELSGGQMR  152 (287)
T ss_pred             HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhC---------CcccCCHHHHH
Confidence            5567899999998  4667899999986421 111111    223333334432 22222         23679999999


Q ss_pred             HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcCh
Q 020527          225 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNH  303 (325)
Q Consensus       225 Rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~  303 (325)
                      |++|||||+.+|++|||||||++||+.++..+.+.|+++++   .|.|||++|||++.+. .||++++|++|++++.|++
T Consensus       153 rl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~---~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~  229 (287)
T PRK13641        153 RVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK---AGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASP  229 (287)
T ss_pred             HHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence            99999999999999999999999999999999999999864   4889999999999986 4999999999999999999


Q ss_pred             HHHhhc
Q 020527          304 AELLHK  309 (325)
Q Consensus       304 ~~l~~~  309 (325)
                      ++++..
T Consensus       230 ~~~~~~  235 (287)
T PRK13641        230 KEIFSD  235 (287)
T ss_pred             HHHhcC
Confidence            987654

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=100.00  E-value=5.6e-51  Score=366.95  Aligned_cols=214  Identities=27%  Similarity=0.488  Sum_probs=177.4

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHH-Hhcce
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREKI  158 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~-~r~~i  158 (325)
                      |+++||+++|+++   .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus         1 l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i   77 (232)
T cd03218           1 LRAENLSKRYGKR---KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI   77 (232)
T ss_pred             CeEEEEEEEeCCE---EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence            4789999999743   5999999999999999999999999999999999999999999999999987655443 35679


Q ss_pred             EEEccCCcCcc-ccHHHHHhcCCCC-CCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 020527          159 GFVGQEPQLLQ-MDIKSNIMYGCPK-DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI  232 (325)
Q Consensus       159 ~~v~Q~~~l~~-~tv~enl~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral  232 (325)
                      +|+||++.+|+ .|++||+.++... ....    ..+.+.++..++.+..++.         ..+||||||||++|||||
T Consensus        78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~qrl~la~al  148 (232)
T cd03218          78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSK---------ASSLSGGERRRVEIARAL  148 (232)
T ss_pred             EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC---------hhhCCHHHHHHHHHHHHH
Confidence            99999998885 6999999864211 1111    1222333334443333222         257999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527          233 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH  308 (325)
Q Consensus       233 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~  308 (325)
                      +.+|++|||||||++||+.+++.+.+.|+++.+   .++|+|++|||++.+.. ||++++|++|++++.|+++++..
T Consensus       149 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~---~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  222 (232)
T cd03218         149 ATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD---RGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA  222 (232)
T ss_pred             hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence            999999999999999999999999999999864   37899999999998765 99999999999999999988765

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=100.00  E-value=6.9e-51  Score=367.59  Aligned_cols=215  Identities=33%  Similarity=0.506  Sum_probs=178.3

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      |+++|++++|++   +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .++.++
T Consensus         2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~-~~~~i~   77 (236)
T TIGR03864         2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRA-ALARLG   77 (236)
T ss_pred             EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChh-hhhhEE
Confidence            789999999974   3599999999999999999999999999999999999999999999999988665443 345899


Q ss_pred             EEccCCcCc-cccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 020527          160 FVGQEPQLL-QMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL  233 (325)
Q Consensus       160 ~v~Q~~~l~-~~tv~enl~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~  233 (325)
                      |+||++.++ ..|++||+.++.. .....    +.+.+.++..++.+.+++         ...+||||||||++|||||+
T Consensus        78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~---------~~~~LS~G~~qrl~laral~  148 (236)
T TIGR03864        78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADD---------KVRELNGGHRRRVEIARALL  148 (236)
T ss_pred             EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcC---------ChhhCCHHHHHHHHHHHHHh
Confidence            999999875 6899999976421 11111    122233333333332222         23579999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhc
Q 020527          234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK  309 (325)
Q Consensus       234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~  309 (325)
                      .+|+++||||||++||+.+++.+.+.|++++++  +|+|+|++||+++.+..||++++|++|++++.|+++++.+.
T Consensus       149 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  222 (236)
T TIGR03864       149 HRPALLLLDEPTVGLDPASRAAIVAHVRALCRD--QGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA  222 (236)
T ss_pred             cCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHh--CCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence            999999999999999999999999999998642  47899999999999877999999999999999999988764

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=2.6e-51  Score=362.65  Aligned_cols=201  Identities=33%  Similarity=0.545  Sum_probs=169.4

Q ss_pred             EEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 020527           81 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF  160 (325)
Q Consensus        81 ~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~  160 (325)
                      +++|++++|++.  .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..   ...+++++|
T Consensus         1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~   75 (205)
T cd03226           1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY   75 (205)
T ss_pred             CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence            368999999751  359999999999999999999999999999999999999999999999998753   345678999


Q ss_pred             EccCCc--CccccHHHHHhcCCCC-CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC
Q 020527          161 VGQEPQ--LLQMDIKSNIMYGCPK-DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA  237 (325)
Q Consensus       161 v~Q~~~--l~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~  237 (325)
                      +||++.  ++..|++||+.++... .....++.++++..++.++.++.+         ..||||||||++|||||+.+|+
T Consensus        76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~laral~~~p~  146 (205)
T cd03226          76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP---------LSLSGGQKQRLAIAAALLSGKD  146 (205)
T ss_pred             EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc---------hhCCHHHHHHHHHHHHHHhCCC
Confidence            999974  4578999999875321 112234555666666655544433         5799999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEE
Q 020527          238 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII  298 (325)
Q Consensus       238 llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~  298 (325)
                      +|||||||++||+.+++.+.+.|+++++   +|+|+|++|||++.+.. ||++++|++|+++
T Consensus       147 llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv  205 (205)
T cd03226         147 LLIFDEPTSGLDYKNMERVGELIRELAA---QGKAVIVITHDYEFLAKVCDRVLLLANGAIV  205 (205)
T ss_pred             EEEEeCCCccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence            9999999999999999999999999864   37899999999999865 9999999999874

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=100.00  E-value=4.5e-51  Score=364.74  Aligned_cols=212  Identities=26%  Similarity=0.508  Sum_probs=176.6

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      |+++||+++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++
T Consensus         1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~   78 (220)
T cd03263           1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLG   78 (220)
T ss_pred             CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEE
Confidence            4789999999742 13699999999999999999999999999999999999999999999999988653 345677899


Q ss_pred             EEccCCcCc-cccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 020527          160 FVGQEPQLL-QMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL  233 (325)
Q Consensus       160 ~v~Q~~~l~-~~tv~enl~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~  233 (325)
                      |+||++.++ ..|++||+.+... .....    +.+.++++..++.+..++.+         .+||||||||++|||||+
T Consensus        79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~al~  149 (220)
T cd03263          79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRA---------RTLSGGMKRKLSLAIALI  149 (220)
T ss_pred             EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChh---------hhCCHHHHHHHHHHHHHh
Confidence            999999888 5899999976421 11111    22334455555544433322         579999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHH
Q 020527          234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL  306 (325)
Q Consensus       234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l  306 (325)
                      .+|++|||||||++||+.+++.+.+.|+++++    ++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus       150 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~----~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~  219 (220)
T cd03263         150 GGPSVLLLDEPTSGLDPASRRAIWDLILEVRK----GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL  219 (220)
T ss_pred             cCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc----CCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence            99999999999999999999999999999853    4799999999999865 999999999999999988764

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=100.00  E-value=3.2e-51  Score=362.75  Aligned_cols=205  Identities=26%  Similarity=0.439  Sum_probs=176.0

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      |+++|++++|++   .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...  ..+++.++
T Consensus         1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~   75 (208)
T cd03268           1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG   75 (208)
T ss_pred             CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence            478999999964   3699999999999999999999999999999999999999999999999987643  44567899


Q ss_pred             EEccCCcCc-cccHHHHHhcCCC-CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC
Q 020527          160 FVGQEPQLL-QMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA  237 (325)
Q Consensus       160 ~v~Q~~~l~-~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~  237 (325)
                      |+||++.++ ..|++||+.++.. .....+++.++++..++.+..++.+         .+|||||||||+||||++.+|+
T Consensus        76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~al~~~p~  146 (208)
T cd03268          76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKV---------KGFSLGMKQRLGIALALLGNPD  146 (208)
T ss_pred             EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhH---------hhCCHHHHHHHHHHHHHhcCCC
Confidence            999999887 5899999976421 1123445566677777766655443         5699999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEc
Q 020527          238 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG  301 (325)
Q Consensus       238 llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g  301 (325)
                      ++||||||++||+.+++.+.+.|+++++   +|+|+|++|||++.+.. ||++++|++|++++.|
T Consensus       147 llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g  208 (208)
T cd03268         147 LLILDEPTNGLDPDGIKELRELILSLRD---QGITVLISSHLLSEIQKVADRIGIINKGKLIEEG  208 (208)
T ss_pred             EEEECCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence            9999999999999999999999999864   37899999999999865 9999999999998754

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9.9e-51  Score=366.69  Aligned_cols=216  Identities=26%  Similarity=0.451  Sum_probs=178.8

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHH-Hhcc
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK  157 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~-~r~~  157 (325)
                      +|+++|++++|++   +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... .++.
T Consensus         5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~   81 (237)
T PRK11614          5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA   81 (237)
T ss_pred             EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence            5899999999964   36999999999999999999999999999999999999999999999999987665443 5678


Q ss_pred             eEEEccCCcCcc-ccHHHHHhcCCCCCCCH---HHHHHHHHHc-CHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 020527          158 IGFVGQEPQLLQ-MDIKSNIMYGCPKDVKN---EDIEWAAKQA-YVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI  232 (325)
Q Consensus       158 i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral  232 (325)
                      ++|+||++.+|+ .||.||+.++.......   +.+.++++.. ++.+..+.         ...+||||||||++|||||
T Consensus        82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~---------~~~~LS~G~~qrl~la~al  152 (237)
T PRK11614         82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQ---------RAGTMSGGEQQMLAIGRAL  152 (237)
T ss_pred             EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhC---------chhhCCHHHHHHHHHHHHH
Confidence            999999998885 69999998753211111   1122222222 12222221         2257999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhhc
Q 020527          233 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK  309 (325)
Q Consensus       233 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~  309 (325)
                      +.+|+++||||||++||+.+++.+.+.|+++++   +|+|+|++|||++.+. .|||+++|++|++++.|+++++...
T Consensus       153 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  227 (237)
T PRK11614        153 MSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE---QGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN  227 (237)
T ss_pred             HhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhcC
Confidence            999999999999999999999999999999864   3789999999999875 5999999999999999999998754

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=100.00  E-value=4.4e-51  Score=370.17  Aligned_cols=221  Identities=31%  Similarity=0.506  Sum_probs=179.5

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      ++++||+++|++.  +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus         1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~   78 (242)
T cd03295           1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG   78 (242)
T ss_pred             CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence            4689999999751  35999999999999999999999999999999999999999999999999987666666678899


Q ss_pred             EEccCCcCc-cccHHHHHhcCCCC-CCCHHHHHHHHHHcCHHHHHHhCCCCc--ccccCCCCCChHHHHHHHHHHHHcCC
Q 020527          160 FVGQEPQLL-QMDIKSNIMYGCPK-DVKNEDIEWAAKQAYVHEFILSLPCGY--ETLVDDDLLSGGQKQRIAIARAILRD  235 (325)
Q Consensus       160 ~v~Q~~~l~-~~tv~enl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~LSgGq~QRv~iAral~~~  235 (325)
                      |+||++.+| ..|++||+.++... .......     ...+.++++.+....  .......+||||||||++|||||+.+
T Consensus        79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~  153 (242)
T cd03295          79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKI-----RERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAAD  153 (242)
T ss_pred             EEccCccccCCCcHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcC
Confidence            999999888 47999999764211 1111110     011223333332221  11122367999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhhc
Q 020527          236 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK  309 (325)
Q Consensus       236 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~  309 (325)
                      |++|||||||++||+.++..+.+.|++++++  .|+|||++||+++.+. .||++++|++|++++.|+++++...
T Consensus       154 p~llllDEPt~~LD~~~~~~l~~~L~~~~~~--~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  226 (242)
T cd03295         154 PPLLLMDEPFGALDPITRDQLQEEFKRLQQE--LGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS  226 (242)
T ss_pred             CCEEEecCCcccCCHHHHHHHHHHHHHHHHH--cCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence            9999999999999999999999999998652  3789999999999875 4999999999999999999988654

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=100.00  E-value=2.3e-51  Score=366.07  Aligned_cols=207  Identities=37%  Similarity=0.522  Sum_probs=169.5

Q ss_pred             EEEEEEEEECCCCC-CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHH----HH
Q 020527           80 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR----WL  154 (325)
Q Consensus        80 i~~~~v~~~y~~~~-~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~----~~  154 (325)
                      |+++||+++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..    ..
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~   80 (218)
T cd03255           1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR   80 (218)
T ss_pred             CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence            47899999997421 13699999999999999999999999999999999999999999999999998765432    23


Q ss_pred             hcceEEEccCCcCcc-ccHHHHHhcCCCCC-CC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 020527          155 REKIGFVGQEPQLLQ-MDIKSNIMYGCPKD-VK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI  228 (325)
Q Consensus       155 r~~i~~v~Q~~~l~~-~tv~enl~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i  228 (325)
                      ++.++|+||++.+|. .|++||+.++.... ..    .+.+.++++..++.+.+++.         ..+||||||||++|
T Consensus        81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~qrv~l  151 (218)
T cd03255          81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHY---------PSELSGGQQQRVAI  151 (218)
T ss_pred             hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcC---------hhhcCHHHHHHHHH
Confidence            568999999998885 69999998753211 11    12233344444444433332         25799999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEE
Q 020527          229 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI  297 (325)
Q Consensus       229 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i  297 (325)
                      ||||+.+|++|||||||++||+.++..+.+.|++++++  .|+|||++||+++.+..||++++|++|++
T Consensus       152 a~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~~d~v~~l~~G~i  218 (218)
T cd03255         152 ARALANDPKIILADEPTGNLDSETGKEVMELLRELNKE--AGTTIVVVTHDPELAEYADRIIELRDGKI  218 (218)
T ss_pred             HHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence            99999999999999999999999999999999998652  37899999999998878999999999974

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=100.00  E-value=8.8e-51  Score=373.89  Aligned_cols=226  Identities=22%  Similarity=0.361  Sum_probs=184.0

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHH---HHh
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLR  155 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~---~~r  155 (325)
                      .|+++||+++|++   +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..   .++
T Consensus         7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~   83 (269)
T PRK11831          7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR   83 (269)
T ss_pred             eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence            5899999999964   3599999999999999999999999999999999999999999999999998765432   346


Q ss_pred             cceEEEccCCcCcc-ccHHHHHhcCCCC--CCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 020527          156 EKIGFVGQEPQLLQ-MDIKSNIMYGCPK--DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI  228 (325)
Q Consensus       156 ~~i~~v~Q~~~l~~-~tv~enl~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i  228 (325)
                      ++++|+||++.+|+ .|+.||+.++...  ....    ..+...++.+++.+..++.         ..+||||||||++|
T Consensus        84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~---------~~~LSgGq~qrv~l  154 (269)
T PRK11831         84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLM---------PSELSGGMARRAAL  154 (269)
T ss_pred             hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCC---------hhhCCHHHHHHHHH
Confidence            78999999998885 6999999764211  1111    1222334444443333322         36799999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHh
Q 020527          229 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL  307 (325)
Q Consensus       229 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~  307 (325)
                      ||||+.+|++|||||||++||+.+++.+.+.|+++.++  .|+|||++|||++.+.. ||++++|++|++++.|++++++
T Consensus       155 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  232 (269)
T PRK11831        155 ARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSA--LGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ  232 (269)
T ss_pred             HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh--cCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence            99999999999999999999999999999999998653  37899999999998865 9999999999999999999987


Q ss_pred             hcC-HHHHHHHH
Q 020527          308 HKG-RLYAKLVK  318 (325)
Q Consensus       308 ~~~-~~~~~~~~  318 (325)
                      +.. ..+..++.
T Consensus       233 ~~~~~~~~~~~~  244 (269)
T PRK11831        233 ANPDPRVRQFLD  244 (269)
T ss_pred             cCCcHHHHHHHH
Confidence            642 23444443

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.2e-50  Score=374.04  Aligned_cols=216  Identities=29%  Similarity=0.537  Sum_probs=182.2

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCC-HHHHhcce
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-IRWLREKI  158 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~-~~~~r~~i  158 (325)
                      ++++|++++|++.  +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+ ...+++.+
T Consensus         2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i   79 (274)
T PRK13644          2 IRLENVSYSYPDG--TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV   79 (274)
T ss_pred             EEEEEEEEEcCCC--CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence            7899999999632  35999999999999999999999999999999999999999999999999987654 34567889


Q ss_pred             EEEccCCc--CccccHHHHHhcCCCCC-CC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 020527          159 GFVGQEPQ--LLQMDIKSNIMYGCPKD-VK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA  231 (325)
Q Consensus       159 ~~v~Q~~~--l~~~tv~enl~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra  231 (325)
                      +|+||++.  ++..|++||+.++.... ..    .+.+.++++..++.+..++.+         ..||||||||++||||
T Consensus        80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS~G~~qrv~lara  150 (274)
T PRK13644         80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSP---------KTLSGGQGQCVALAGI  150 (274)
T ss_pred             EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCc---------ccCCHHHHHHHHHHHH
Confidence            99999985  45789999998752111 11    122344455555555444333         5799999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhc
Q 020527          232 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK  309 (325)
Q Consensus       232 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~  309 (325)
                      |+.+|++|||||||++||+.++..+.+.|+++++   .|.|||++|||++.+..||++++|++|++++.|++++++..
T Consensus       151 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~---~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  225 (274)
T PRK13644        151 LTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE---KGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD  225 (274)
T ss_pred             HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence            9999999999999999999999999999999864   38899999999999877999999999999999999887654

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=100.00  E-value=1.1e-50  Score=369.06  Aligned_cols=220  Identities=33%  Similarity=0.499  Sum_probs=178.1

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCC--------
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD--------  150 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~--------  150 (325)
                      +|+++||+++|+++   ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+        
T Consensus         3 ~l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   79 (250)
T PRK11264          3 AIEVKNLVKKFHGQ---TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL   79 (250)
T ss_pred             cEEEeceEEEECCe---eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence            48999999999743   5999999999999999999999999999999999999999999999999886432        


Q ss_pred             HHHHhcceEEEccCCcCc-cccHHHHHhcCCC--CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 020527          151 IRWLREKIGFVGQEPQLL-QMDIKSNIMYGCP--KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA  227 (325)
Q Consensus       151 ~~~~r~~i~~v~Q~~~l~-~~tv~enl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~  227 (325)
                      ...+++.++|+||++.++ ..|++||+.++..  ..........     .+.++++.+...........+||||||||++
T Consensus        80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~  154 (250)
T PRK11264         80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATA-----RARELLAKVGLAGKETSYPRRLSGGQQQRVA  154 (250)
T ss_pred             HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHcCCcchhhCChhhCChHHHHHHH
Confidence            234577899999999888 4799999976411  1111111110     1223333332211112223679999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHH
Q 020527          228 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL  306 (325)
Q Consensus       228 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l  306 (325)
                      |||||+.+|++|||||||++||+.++..+.+.|+++.+   +|.|||++|||++.+.. ||++++|++|++++.|+++++
T Consensus       155 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  231 (250)
T PRK11264        155 IARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ---EKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKAL  231 (250)
T ss_pred             HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence            99999999999999999999999999999999999864   37899999999999865 999999999999999999998


Q ss_pred             hhc
Q 020527          307 LHK  309 (325)
Q Consensus       307 ~~~  309 (325)
                      ++.
T Consensus       232 ~~~  234 (250)
T PRK11264        232 FAD  234 (250)
T ss_pred             hcC
Confidence            754

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-50  Score=382.64  Aligned_cols=223  Identities=32%  Similarity=0.509  Sum_probs=183.0

Q ss_pred             ccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC-----CCCCeEEECCEeCCC--CC
Q 020527           78 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LD  150 (325)
Q Consensus        78 ~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~-----~~~G~I~i~g~~i~~--~~  150 (325)
                      +.|+++|++++|.+. ..++|+|+||+|++||++||+||||||||||+++|+|+++     |++|+|.++|+++..  .+
T Consensus        79 ~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~  157 (329)
T PRK14257         79 NVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKIS  157 (329)
T ss_pred             ceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence            469999999999642 2469999999999999999999999999999999999986     579999999999863  23


Q ss_pred             HHHHhcceEEEccCCcCccccHHHHHhcCCCC-CCCHHH-----HHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHH
Q 020527          151 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DVKNED-----IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ  224 (325)
Q Consensus       151 ~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~Q  224 (325)
                      ...+|+.++|+||+|.+|++|++||+.|+... ...++.     ...+++.+++.+.++.     .....+.+|||||||
T Consensus       158 ~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~-----~~~~~~~~LSgGqkq  232 (329)
T PRK14257        158 SLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKD-----DLDKAGNALSGGQQQ  232 (329)
T ss_pred             hHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhh-----hhhCCcccCCHHHHH
Confidence            45678899999999999999999999976311 111222     2333444443221110     001123679999999


Q ss_pred             HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcCh
Q 020527          225 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH  303 (325)
Q Consensus       225 Rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~  303 (325)
                      |++|||||+.+|+||||||||++||+.+...+.+.|+++.+    ++|+|+|||+++.+.. ||||++|++|++++.|++
T Consensus       233 Rl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~----~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~  308 (329)
T PRK14257        233 RLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK----KYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGET  308 (329)
T ss_pred             HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc----CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence            99999999999999999999999999999999999998853    5799999999999876 999999999999999999


Q ss_pred             HHHhhcC
Q 020527          304 AELLHKG  310 (325)
Q Consensus       304 ~~l~~~~  310 (325)
                      +++++..
T Consensus       309 ~~l~~~~  315 (329)
T PRK14257        309 KTIFIHP  315 (329)
T ss_pred             HHHhcCC
Confidence            9998753

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.3e-50  Score=373.15  Aligned_cols=220  Identities=34%  Similarity=0.598  Sum_probs=185.0

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      +++++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++++
T Consensus         7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i   85 (271)
T PRK13632          7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI   85 (271)
T ss_pred             EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence            48999999999632 24699999999999999999999999999999999999999999999999998766666678899


Q ss_pred             EEEccCCc--CccccHHHHHhcCCCC-CCCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 020527          159 GFVGQEPQ--LLQMDIKSNIMYGCPK-DVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA  231 (325)
Q Consensus       159 ~~v~Q~~~--l~~~tv~enl~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra  231 (325)
                      +|+||++.  ++..|++||+.++... ....+    .+.++++..++.+++++.+         .+||||||||++||||
T Consensus        86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~lara  156 (271)
T PRK13632         86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEP---------QNLSGGQKQRVAIASV  156 (271)
T ss_pred             EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCc---------ccCCHHHHHHHHHHHH
Confidence            99999984  3468999999875211 11121    2344555566655555443         5799999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcC
Q 020527          232 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG  310 (325)
Q Consensus       232 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~  310 (325)
                      |+.+|++|||||||++||+.+++.+.+.|++++++  .++|+|++||+++.+..||++++|++|++++.|+++++....
T Consensus       157 l~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~--~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~  233 (271)
T PRK13632        157 LALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKT--RKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNK  233 (271)
T ss_pred             HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcCH
Confidence            99999999999999999999999999999998652  258999999999988779999999999999999998876543

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.5e-50  Score=373.88  Aligned_cols=221  Identities=34%  Similarity=0.532  Sum_probs=186.5

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .|+++||+++|++.....+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+...+++.+
T Consensus         4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i   83 (277)
T PRK13642          4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI   83 (277)
T ss_pred             eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence            48999999999743223599999999999999999999999999999999999999999999999998765556678899


Q ss_pred             EEEccCCc--CccccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 020527          159 GFVGQEPQ--LLQMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA  231 (325)
Q Consensus       159 ~~v~Q~~~--l~~~tv~enl~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra  231 (325)
                      +|+||++.  ++..||.||+.++.. .....    +.+..+++.+++.++.++.+         ..||||||||++||||
T Consensus        84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~lAra  154 (277)
T PRK13642         84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREP---------ARLSGGQKQRVAVAGI  154 (277)
T ss_pred             EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCc---------ccCCHHHHHHHHHHHH
Confidence            99999984  457899999986521 11122    22344555566655544433         5799999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcC
Q 020527          232 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG  310 (325)
Q Consensus       232 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~  310 (325)
                      |+.+|++|||||||++||+.++..+.+.|+++.++  .|.|||++|||++.+..||++++|++|++++.|++++++...
T Consensus       155 L~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~  231 (277)
T PRK13642        155 IALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEK--YQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATS  231 (277)
T ss_pred             HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcCH
Confidence            99999999999999999999999999999998752  478999999999998779999999999999999999887643

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=100.00  E-value=7.8e-51  Score=362.70  Aligned_cols=209  Identities=27%  Similarity=0.480  Sum_probs=175.0

Q ss_pred             EEEEEEEEECCCCCC-CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           80 VQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        80 i~~~~v~~~y~~~~~-~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      |+++|++++|+++.. .++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ....+++++
T Consensus         2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i   80 (218)
T cd03266           2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL   80 (218)
T ss_pred             eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence            789999999975311 159999999999999999999999999999999999999999999999999864 345567889


Q ss_pred             EEEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 020527          159 GFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI  232 (325)
Q Consensus       159 ~~v~Q~~~l~~-~tv~enl~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral  232 (325)
                      +|+||++.+|+ .|++||+.+... ....    .+.+.++++..++.+.+++.+         .+||||||||++|||||
T Consensus        81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~laral  151 (218)
T cd03266          81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRV---------GGFSTGMRQKVAIARAL  151 (218)
T ss_pred             EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhh---------hhcCHHHHHHHHHHHHH
Confidence            99999998885 699999975321 1111    223445566666655544433         57999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEc
Q 020527          233 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG  301 (325)
Q Consensus       233 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g  301 (325)
                      +.+|++|||||||++||+.+++.+.+.|+++++   +|+|+|++|||++.+.. ||++++|++|++++.|
T Consensus       152 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~  218 (218)
T cd03266         152 VHDPPVLLLDEPTTGLDVMATRALREFIRQLRA---LGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG  218 (218)
T ss_pred             hcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence            999999999999999999999999999999864   37899999999998864 9999999999998653

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.2e-50  Score=372.22  Aligned_cols=216  Identities=32%  Similarity=0.469  Sum_probs=184.2

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .|+++|++++|+++   .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus        11 ~l~i~~l~~~~~~~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i   87 (265)
T PRK10575         11 TFALRNVSFRVPGR---TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV   87 (265)
T ss_pred             eEEEeeEEEEECCE---EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence            48999999999743   699999999999999999999999999999999999999999999999998766666677889


Q ss_pred             EEEccCCcCc-cccHHHHHhcCCCCC------C---CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 020527          159 GFVGQEPQLL-QMDIKSNIMYGCPKD------V---KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI  228 (325)
Q Consensus       159 ~~v~Q~~~l~-~~tv~enl~~~~~~~------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i  228 (325)
                      +|+||++.++ ..|+.||+.++....      .   ..+.+..+++.+++.+.+++.+         .+||||||||++|
T Consensus        88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~l  158 (265)
T PRK10575         88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV---------DSLSGGERQRAWI  158 (265)
T ss_pred             EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc---------ccCCHHHHHHHHH
Confidence            9999998776 579999998753110      0   1223444555666655444433         5799999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHh
Q 020527          229 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELL  307 (325)
Q Consensus       229 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~  307 (325)
                      ||||+.+|++|||||||++||+.+++.+.+.|.++.++  .|.|||++||+++.+. .||++++|++|++++.|+++++.
T Consensus       159 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~--~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~  236 (265)
T PRK10575        159 AMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQE--RGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM  236 (265)
T ss_pred             HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence            99999999999999999999999999999999998652  3789999999999986 59999999999999999998876


Q ss_pred             h
Q 020527          308 H  308 (325)
Q Consensus       308 ~  308 (325)
                      .
T Consensus       237 ~  237 (265)
T PRK10575        237 R  237 (265)
T ss_pred             C
Confidence            5

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=9.1e-51  Score=367.59  Aligned_cols=215  Identities=34%  Similarity=0.548  Sum_probs=180.2

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCC--HHHHhcc
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD--IRWLREK  157 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~--~~~~r~~  157 (325)
                      |+++|++++|++   .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+  ...++++
T Consensus         2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~   78 (240)
T PRK09493          2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE   78 (240)
T ss_pred             EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence            789999999974   35999999999999999999999999999999999999999999999999986532  2455778


Q ss_pred             eEEEccCCcCc-cccHHHHHhcCCC--CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527          158 IGFVGQEPQLL-QMDIKSNIMYGCP--KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR  230 (325)
Q Consensus       158 i~~v~Q~~~l~-~~tv~enl~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr  230 (325)
                      ++|+||++.++ ..||+||+.++..  .....    +.+.++++..++.+.+++.+         ..||||||||++|||
T Consensus        79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS~G~~qrv~la~  149 (240)
T PRK09493         79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYP---------SELSGGQQQRVAIAR  149 (240)
T ss_pred             eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcCh---------hhcCHHHHHHHHHHH
Confidence            99999999887 4799999987521  11111    12333444444444433332         579999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhc
Q 020527          231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK  309 (325)
Q Consensus       231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~  309 (325)
                      ||+.+|+++||||||++||+.++..+.+.|+++++   +|+|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus       150 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  226 (240)
T PRK09493        150 ALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE---EGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN  226 (240)
T ss_pred             HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence            99999999999999999999999999999999864   37899999999999865 999999999999999999988654

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.5e-50  Score=381.64  Aligned_cols=228  Identities=24%  Similarity=0.369  Sum_probs=182.5

Q ss_pred             cccEEEEEEEEECCCCCC-CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC----CCCCeEEECCEeCCCCCH
Q 020527           77 MGHVQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE----PSDGQIYIDGFPLTDLDI  151 (325)
Q Consensus        77 ~~~i~~~~v~~~y~~~~~-~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~----~~~G~I~i~g~~i~~~~~  151 (325)
                      |..|+++||++.|+.+.. ..+|+||||+|++||+++|+|+||||||||+++|+|+++    |++|+|.++|+++..++.
T Consensus         1 m~~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~   80 (326)
T PRK11022          1 MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE   80 (326)
T ss_pred             CceEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCH
Confidence            335899999999975321 359999999999999999999999999999999999997    489999999999987765


Q ss_pred             HHHh----cceEEEccCCc--Cc-cccHHHHHhcCCC--CCCC----HHHHHHHHHHcCHH---HHHHhCCCCcccccCC
Q 020527          152 RWLR----EKIGFVGQEPQ--LL-QMDIKSNIMYGCP--KDVK----NEDIEWAAKQAYVH---EFILSLPCGYETLVDD  215 (325)
Q Consensus       152 ~~~r----~~i~~v~Q~~~--l~-~~tv~enl~~~~~--~~~~----~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  215 (325)
                      +.++    +.|+|+||++.  ++ ..|+.+++.....  ....    .+.+.++++.+++.   ..+++.         +
T Consensus        81 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~---------p  151 (326)
T PRK11022         81 KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVY---------P  151 (326)
T ss_pred             HHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCC---------c
Confidence            4432    46999999984  44 3688777643210  0111    22334455555553   122322         3


Q ss_pred             CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeC
Q 020527          216 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDD  294 (325)
Q Consensus       216 ~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~  294 (325)
                      .+|||||||||+|||||+.+|++||+||||++||+.++.+++++|++++++  .|.|+|+||||++.+. .||||++|++
T Consensus       152 ~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~--~g~til~iTHdl~~~~~~adri~vm~~  229 (326)
T PRK11022        152 HQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQK--ENMALVLITHDLALVAEAAHKIIVMYA  229 (326)
T ss_pred             hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence            679999999999999999999999999999999999999999999999753  4889999999999986 5999999999


Q ss_pred             CEEEEEcChHHHhhc-CHHHHH
Q 020527          295 GRIIEVGNHAELLHK-GRLYAK  315 (325)
Q Consensus       295 G~i~~~g~~~~l~~~-~~~~~~  315 (325)
                      |+|++.|++++++++ ...|.+
T Consensus       230 G~ive~g~~~~~~~~p~hpyt~  251 (326)
T PRK11022        230 GQVVETGKAHDIFRAPRHPYTQ  251 (326)
T ss_pred             CEEEEECCHHHHhhCCCChHHH
Confidence            999999999999865 334544

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.4e-50  Score=373.01  Aligned_cols=216  Identities=28%  Similarity=0.422  Sum_probs=178.7

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCC--CCHHHHhcc
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD--LDIRWLREK  157 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~--~~~~~~r~~  157 (325)
                      |+++||+++|++   +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..  .+...+++.
T Consensus         2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~   78 (271)
T PRK13638          2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ   78 (271)
T ss_pred             eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence            789999999974   359999999999999999999999999999999999999999999999999842  233456778


Q ss_pred             eEEEccCCc--CccccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527          158 IGFVGQEPQ--LLQMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR  230 (325)
Q Consensus       158 i~~v~Q~~~--l~~~tv~enl~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr  230 (325)
                      ++|+||++.  ++..|+.+|+.++.. .....    +.+.++++..++.++.++.         ..+||||||||++|||
T Consensus        79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LSgG~~qrl~lar  149 (271)
T PRK13638         79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQP---------IQCLSHGQKKRVAIAG  149 (271)
T ss_pred             eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCC---------chhCCHHHHHHHHHHH
Confidence            999999986  346789999976421 11111    1223344444554433322         2579999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhc
Q 020527          231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK  309 (325)
Q Consensus       231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~  309 (325)
                      ||+.+|++|||||||++||+.++..+.+.|+++.+   +|.|||++|||++.+.. ||++++|++|++++.|++++++..
T Consensus       150 aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  226 (271)
T PRK13638        150 ALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA---QGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC  226 (271)
T ss_pred             HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence            99999999999999999999999999999999864   37899999999999864 999999999999999999888664


Q ss_pred             C
Q 020527          310 G  310 (325)
Q Consensus       310 ~  310 (325)
                      .
T Consensus       227 ~  227 (271)
T PRK13638        227 T  227 (271)
T ss_pred             h
Confidence            3

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=100.00  E-value=8.9e-51  Score=363.08  Aligned_cols=208  Identities=31%  Similarity=0.487  Sum_probs=170.8

Q ss_pred             EEEEEEEEECCCCC-CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHH---Hh
Q 020527           80 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW---LR  155 (325)
Q Consensus        80 i~~~~v~~~y~~~~-~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~---~r  155 (325)
                      |+++||+++|++.. ..++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...   ++
T Consensus         2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (221)
T TIGR02211         2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR   81 (221)
T ss_pred             EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence            68999999996421 135999999999999999999999999999999999999999999999999987665432   23


Q ss_pred             -cceEEEccCCcCc-cccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 020527          156 -EKIGFVGQEPQLL-QMDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI  228 (325)
Q Consensus       156 -~~i~~v~Q~~~l~-~~tv~enl~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i  228 (325)
                       +.++|+||++.+| ..|++||+.++.. ....    .+.+.+.++..++.+.+++.         ...||||||||++|
T Consensus        82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~qrv~l  152 (221)
T TIGR02211        82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHR---------PSELSGGERQRVAI  152 (221)
T ss_pred             HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC---------hhhCCHHHHHHHHH
Confidence             6799999999888 5799999976421 1111    11233344444444433332         25799999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEE
Q 020527          229 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRII  298 (325)
Q Consensus       229 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~  298 (325)
                      ||||+.+|++|||||||++||+.++..+.+.|++++++  .++|+|++|||++.+..||++++|++|+++
T Consensus       153 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~~tH~~~~~~~~d~v~~l~~G~i~  220 (221)
T TIGR02211       153 ARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRE--LNTSFLVVTHDLELAKKLDRVLEMKDGQLF  220 (221)
T ss_pred             HHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence            99999999999999999999999999999999998652  378999999999988779999999999975

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=100.00  E-value=6.4e-51  Score=362.02  Aligned_cols=206  Identities=33%  Similarity=0.541  Sum_probs=173.1

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      |+++|++++|+++   ++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..  +++++
T Consensus         1 i~~~~l~~~~~~~---~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~   75 (213)
T cd03301           1 VELENVTKRFGNV---TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA   75 (213)
T ss_pred             CEEEeeEEEECCe---eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence            4789999999753   599999999999999999999999999999999999999999999999998654332  46799


Q ss_pred             EEccCCcCc-cccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 020527          160 FVGQEPQLL-QMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL  233 (325)
Q Consensus       160 ~v~Q~~~l~-~~tv~enl~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~  233 (325)
                      |+||++.++ ..|++||+.++... ...    .+.+.++++..++.+.+++.+         .+||||||||++|||||+
T Consensus        76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qr~~laral~  146 (213)
T cd03301          76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKP---------KQLSGGQRQRVALGRAIV  146 (213)
T ss_pred             EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCCh---------hhCCHHHHHHHHHHHHHh
Confidence            999999888 57999999764211 111    122344555556655554443         579999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEc
Q 020527          234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG  301 (325)
Q Consensus       234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g  301 (325)
                      .+|+++||||||++||+.++..+.+.|+++.++  .|+|||++|||++.+.. ||++++|++|++++.|
T Consensus       147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g  213 (213)
T cd03301         147 REPKVFLMDEPLSNLDAKLRVQMRAELKRLQQR--LGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG  213 (213)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence            999999999999999999999999999998753  37899999999998865 9999999999998765

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.1e-50  Score=368.75  Aligned_cols=214  Identities=33%  Similarity=0.538  Sum_probs=178.7

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCC-----CCeEEECCEeCCCC--CHH
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-----DGQIYIDGFPLTDL--DIR  152 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~-----~G~I~i~g~~i~~~--~~~  152 (325)
                      |+++||+++|++.   .+++|+||+|++||+++|+||||||||||+++|+|+++|+     +|+|.++|+++...  ...
T Consensus         2 l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~   78 (247)
T TIGR00972         2 IEIENLNLFYGEK---EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV   78 (247)
T ss_pred             EEEEEEEEEECCe---eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence            7899999999753   5999999999999999999999999999999999999998     99999999998653  234


Q ss_pred             HHhcceEEEccCCcCccccHHHHHhcCCCC-C-CCH----HHHHHHHHHcCHH----HHHHhCCCCcccccCCCCCChHH
Q 020527          153 WLREKIGFVGQEPQLLQMDIKSNIMYGCPK-D-VKN----EDIEWAAKQAYVH----EFILSLPCGYETLVDDDLLSGGQ  222 (325)
Q Consensus       153 ~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~-~-~~~----~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~LSgGq  222 (325)
                      .+++.++|+||++.+|+.|++||+.++... . ...    +.+..+++..++.    +.+++         ...+|||||
T Consensus        79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---------~~~~LSgG~  149 (247)
T TIGR00972        79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHD---------SALGLSGGQ  149 (247)
T ss_pred             HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhC---------CcccCCHHH
Confidence            567889999999988889999999864211 1 111    2233344444443    22222         236799999


Q ss_pred             HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEc
Q 020527          223 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG  301 (325)
Q Consensus       223 ~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g  301 (325)
                      |||++|||||+.+|+++||||||++||+.++..+.++|+++++    ++|+|++|||++.+.. ||++++|++|++++.|
T Consensus       150 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~----~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~  225 (247)
T TIGR00972       150 QQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK----KYTIVIVTHNMQQAARISDRTAFFYDGELVEYG  225 (247)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh----cCeEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence            9999999999999999999999999999999999999999864    3799999999998864 9999999999999999


Q ss_pred             ChHHHhhc
Q 020527          302 NHAELLHK  309 (325)
Q Consensus       302 ~~~~l~~~  309 (325)
                      ++++++..
T Consensus       226 ~~~~~~~~  233 (247)
T TIGR00972       226 PTEQIFTN  233 (247)
T ss_pred             CHHHHHhC
Confidence            99998754

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.7e-51  Score=361.80  Aligned_cols=229  Identities=27%  Similarity=0.424  Sum_probs=191.4

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHH-hcc
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REK  157 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~-r~~  157 (325)
                      .+++++++++|++   ..+++||||++++||+++||||||||||||+++|+|+|+|++|+|.++|+++..+++.+. |..
T Consensus         4 lL~v~~l~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~G   80 (250)
T COG0411           4 LLEVRGLSKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLG   80 (250)
T ss_pred             eeeeccceeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhcc
Confidence            4789999999986   369999999999999999999999999999999999999999999999999999887654 667


Q ss_pred             eEEEccCCcCc-cccHHHHHhcCCCCC----------CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHH
Q 020527          158 IGFVGQEPQLL-QMDIKSNIMYGCPKD----------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI  226 (325)
Q Consensus       158 i~~v~Q~~~l~-~~tv~enl~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv  226 (325)
                      |+--||.+.+| .+||.||++.+....          .......++.  ....++++.+...........+||+|||+|+
T Consensus        81 i~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~--e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~L  158 (250)
T COG0411          81 IARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREAR--ERARELLEFVGLGELADRPAGNLSYGQQRRL  158 (250)
T ss_pred             ceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHH--HHHHHHHHHcCCchhhcchhhcCChhHhHHH
Confidence            99999999999 689999998752111          0000111111  1234455555444444444468999999999


Q ss_pred             HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHH
Q 020527          227 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAE  305 (325)
Q Consensus       227 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~  305 (325)
                      .|||||+.+|++||||||.+||.+.....+.+.+++++++  .|.||++|-|||+.+. .||||+||+.|+++++|+|++
T Consensus       159 EIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~--~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~e  236 (250)
T COG0411         159 EIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDR--GGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEE  236 (250)
T ss_pred             HHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhc--CCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHH
Confidence            9999999999999999999999999999999999999863  4799999999999985 599999999999999999999


Q ss_pred             HhhcCHHHH
Q 020527          306 LLHKGRLYA  314 (325)
Q Consensus       306 l~~~~~~~~  314 (325)
                      +.+++...+
T Consensus       237 V~~dp~Vie  245 (250)
T COG0411         237 VRNNPRVIE  245 (250)
T ss_pred             HhcCHHhHH
Confidence            988765543

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=2.7e-50  Score=368.51  Aligned_cols=217  Identities=31%  Similarity=0.452  Sum_probs=183.0

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      +|+++|++++|+++   .+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus         2 ~l~~~~l~~~~~~~---~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i   78 (258)
T PRK13548          2 MLEARNLSVRLGGR---TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRR   78 (258)
T ss_pred             eEEEEeEEEEeCCe---eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhhe
Confidence            38999999999753   599999999999999999999999999999999999999999999999998766666667789


Q ss_pred             EEEccCCcCc-cccHHHHHhcCCCCC-C----CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 020527          159 GFVGQEPQLL-QMDIKSNIMYGCPKD-V----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI  232 (325)
Q Consensus       159 ~~v~Q~~~l~-~~tv~enl~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral  232 (325)
                      +|+||++.++ ..|++||+.++.... .    ....+.++++..++.+..++.+         .+||||||||++|||||
T Consensus        79 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgGe~qrv~la~al  149 (258)
T PRK13548         79 AVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDY---------PQLSGGEQQRVQLARVL  149 (258)
T ss_pred             EEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCc---------ccCCHHHHHHHHHHHHH
Confidence            9999999874 689999998753211 1    1122344555555554443333         57999999999999999


Q ss_pred             c------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHH
Q 020527          233 L------RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAE  305 (325)
Q Consensus       233 ~------~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~  305 (325)
                      +      .+|++|||||||++||+.++..+.+.|+++.++  .|.|||++|||++.+. .||+|++|++|++++.|++++
T Consensus       150 ~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~  227 (258)
T PRK13548        150 AQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHE--RGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAE  227 (258)
T ss_pred             hcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHH
Confidence            9      599999999999999999999999999998632  4789999999999986 599999999999999999988


Q ss_pred             Hhhc
Q 020527          306 LLHK  309 (325)
Q Consensus       306 l~~~  309 (325)
                      +...
T Consensus       228 ~~~~  231 (258)
T PRK13548        228 VLTP  231 (258)
T ss_pred             HhCh
Confidence            8653

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.5e-50  Score=374.33  Aligned_cols=221  Identities=30%  Similarity=0.527  Sum_probs=186.5

Q ss_pred             cEEEEEEEEECCCCC---CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCC-HHHH
Q 020527           79 HVQFVNISFHYPSRP---TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-IRWL  154 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~---~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~-~~~~  154 (325)
                      +|+++|++++|++..   .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ...+
T Consensus         4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~   83 (280)
T PRK13633          4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI   83 (280)
T ss_pred             eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence            489999999997421   246999999999999999999999999999999999999999999999999986533 3456


Q ss_pred             hcceEEEccCCc--CccccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 020527          155 REKIGFVGQEPQ--LLQMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA  227 (325)
Q Consensus       155 r~~i~~v~Q~~~--l~~~tv~enl~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~  227 (325)
                      +++++|+||++.  ++..|+.+|+.++... ...    .+.+.++++.+++.++.++.+         .+||||||||++
T Consensus        84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LS~G~~qrv~  154 (280)
T PRK13633         84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP---------HLLSGGQKQRVA  154 (280)
T ss_pred             hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc---------ccCCHHHHHHHH
Confidence            788999999984  4567899999875211 111    233455666667666655544         579999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHh
Q 020527          228 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL  307 (325)
Q Consensus       228 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~  307 (325)
                      |||||+.+|+++||||||++||+.++..+.+.|+++.++  .|.|||++|||++.+..||++++|++|++++.|+++++.
T Consensus       155 laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~--~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  232 (280)
T PRK13633        155 IAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKK--YGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF  232 (280)
T ss_pred             HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence            999999999999999999999999999999999999652  488999999999998779999999999999999999987


Q ss_pred             hcC
Q 020527          308 HKG  310 (325)
Q Consensus       308 ~~~  310 (325)
                      ...
T Consensus       233 ~~~  235 (280)
T PRK13633        233 KEV  235 (280)
T ss_pred             cCh
Confidence            643

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.3e-50  Score=365.24  Aligned_cols=217  Identities=24%  Similarity=0.418  Sum_probs=179.5

Q ss_pred             ccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHH-Hhc
Q 020527           78 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LRE  156 (325)
Q Consensus        78 ~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~-~r~  156 (325)
                      ..++++|++++|++   +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++
T Consensus         2 ~~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   78 (241)
T PRK10895          2 ATLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARR   78 (241)
T ss_pred             ceEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHh
Confidence            35899999999974   36999999999999999999999999999999999999999999999999987665433 467


Q ss_pred             ceEEEccCCcCcc-ccHHHHHhcCCCCC--CCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 020527          157 KIGFVGQEPQLLQ-MDIKSNIMYGCPKD--VKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA  229 (325)
Q Consensus       157 ~i~~v~Q~~~l~~-~tv~enl~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA  229 (325)
                      .++|+||++.+++ .|++||+.+.....  ...    ..+.+.++..++.+..+         .....||||||||++||
T Consensus        79 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---------~~~~~LS~G~~qrv~la  149 (241)
T PRK10895         79 GIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRD---------SMGQSLSGGERRRVEIA  149 (241)
T ss_pred             CeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhh---------cchhhCCHHHHHHHHHH
Confidence            8999999998885 79999998642111  111    11222333333332222         22357999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhh
Q 020527          230 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLH  308 (325)
Q Consensus       230 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~  308 (325)
                      |||+.+|++|||||||++||+.++..+.+.++++++   +|+|+|++||+++.+. .||++++|++|++++.|+++++++
T Consensus       150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~  226 (241)
T PRK10895        150 RALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD---SGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ  226 (241)
T ss_pred             HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh---cCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence            999999999999999999999999999999998864   3789999999998875 499999999999999999998875


Q ss_pred             c
Q 020527          309 K  309 (325)
Q Consensus       309 ~  309 (325)
                      .
T Consensus       227 ~  227 (241)
T PRK10895        227 D  227 (241)
T ss_pred             C
Confidence            4

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.8e-50  Score=368.91  Aligned_cols=224  Identities=25%  Similarity=0.451  Sum_probs=186.7

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      +|+++|++++|++   +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus         2 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i   78 (255)
T PRK11231          2 TLRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRL   78 (255)
T ss_pred             EEEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhhe
Confidence            4899999999974   3699999999999999999999999999999999999999999999999988766666667789


Q ss_pred             EEEccCCcCcc-ccHHHHHhcCCCC-----C----CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 020527          159 GFVGQEPQLLQ-MDIKSNIMYGCPK-----D----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI  228 (325)
Q Consensus       159 ~~v~Q~~~l~~-~tv~enl~~~~~~-----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i  228 (325)
                      +|+||++.+++ .|++||+.++...     .    ...+.+..+++..++.+..+..+         ..|||||+||++|
T Consensus        79 ~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~l  149 (255)
T PRK11231         79 ALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL---------TDLSGGQRQRAFL  149 (255)
T ss_pred             EEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc---------ccCCHHHHHHHHH
Confidence            99999998874 6999999875211     0    01122344455555554444332         5799999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHh
Q 020527          229 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL  307 (325)
Q Consensus       229 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~  307 (325)
                      |||++.+|++|||||||++||+.++..+.+.|+++.+   +|+|+|++||+++.+.. ||++++|++|+++..|+++++.
T Consensus       150 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~---~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  226 (255)
T PRK11231        150 AMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT---QGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM  226 (255)
T ss_pred             HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhc
Confidence            9999999999999999999999999999999999864   37899999999999864 9999999999999999998886


Q ss_pred             hcCHHHHHHHH
Q 020527          308 HKGRLYAKLVK  318 (325)
Q Consensus       308 ~~~~~~~~~~~  318 (325)
                      .. ..+.+.+.
T Consensus       227 ~~-~~~~~~~~  236 (255)
T PRK11231        227 TP-GLLRTVFD  236 (255)
T ss_pred             CH-HHHHHHhC
Confidence            53 34455553

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3e-50  Score=379.49  Aligned_cols=227  Identities=30%  Similarity=0.466  Sum_probs=185.0

Q ss_pred             cEEEEEEEEECCCCC-------CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCH
Q 020527           79 HVQFVNISFHYPSRP-------TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI  151 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~-------~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~  151 (325)
                      .|+++||++.|+.+.       ...+|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+.
T Consensus         5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~   84 (327)
T PRK11308          5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP   84 (327)
T ss_pred             eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence            489999999996311       2469999999999999999999999999999999999999999999999999977654


Q ss_pred             H---HHhcceEEEccCCc--Cc-cccHHHHHhcCCC--CCCC----HHHHHHHHHHcCHH-HHHHhCCCCcccccCCCCC
Q 020527          152 R---WLREKIGFVGQEPQ--LL-QMDIKSNIMYGCP--KDVK----NEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLL  218 (325)
Q Consensus       152 ~---~~r~~i~~v~Q~~~--l~-~~tv~enl~~~~~--~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L  218 (325)
                      .   .+|++|+||||++.  ++ ..|+.+++..+..  ....    .+.+.++++.+++. ..+++.         +.+|
T Consensus        85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------p~~L  155 (327)
T PRK11308         85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRY---------PHMF  155 (327)
T ss_pred             HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCC---------CccC
Confidence            3   45678999999984  55 4799999864211  0111    12334445555543 233333         3679


Q ss_pred             ChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEE
Q 020527          219 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI  297 (325)
Q Consensus       219 SgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i  297 (325)
                      ||||||||+|||||+.+|++||+||||++||+.++.+++++|.+++++  .|.|+|+||||++.+.. ||+|++|++|++
T Consensus       156 SgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~--~g~til~iTHdl~~~~~~adrv~vm~~G~i  233 (327)
T PRK11308        156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQE--LGLSYVFISHDLSVVEHIADEVMVMYLGRC  233 (327)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence            999999999999999999999999999999999999999999999763  48899999999999975 999999999999


Q ss_pred             EEEcChHHHhhc-CHHHHHH
Q 020527          298 IEVGNHAELLHK-GRLYAKL  316 (325)
Q Consensus       298 ~~~g~~~~l~~~-~~~~~~~  316 (325)
                      ++.|++++++++ ...|.+.
T Consensus       234 ve~g~~~~~~~~p~hpyt~~  253 (327)
T PRK11308        234 VEKGTKEQIFNNPRHPYTQA  253 (327)
T ss_pred             EEECCHHHHhcCCCCHHHHH
Confidence            999999999875 3345443

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.6e-50  Score=369.98  Aligned_cols=217  Identities=24%  Similarity=0.396  Sum_probs=184.4

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .|+++||+++|+++   .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.+
T Consensus         7 ~l~i~~l~~~~~~~---~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i   83 (265)
T PRK10253          7 RLRGEQLTLGYGKY---TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI   83 (265)
T ss_pred             EEEEEEEEEEECCE---EEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence            59999999999753   599999999999999999999999999999999999999999999999998776666667789


Q ss_pred             EEEccCCcCc-cccHHHHHhcCCCCC------CC---HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 020527          159 GFVGQEPQLL-QMDIKSNIMYGCPKD------VK---NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI  228 (325)
Q Consensus       159 ~~v~Q~~~l~-~~tv~enl~~~~~~~------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i  228 (325)
                      +|+||++.++ ..|++||+.++....      ..   .+.+.++++..++.+..++.+         .+||||||||++|
T Consensus        84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~Gq~qrv~l  154 (265)
T PRK10253         84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV---------DTLSGGQRQRAWI  154 (265)
T ss_pred             EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc---------ccCChHHHHHHHH
Confidence            9999999887 579999998752111      01   123344555555555444333         5799999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHh
Q 020527          229 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELL  307 (325)
Q Consensus       229 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~  307 (325)
                      |||++.+|+++||||||++||+.++..+.+.|.++.++  .|.|||++|||++.+. .||++++|++|++++.|+++++.
T Consensus       155 aral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~--~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  232 (265)
T PRK10253        155 AMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNRE--KGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV  232 (265)
T ss_pred             HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            99999999999999999999999999999999998652  3789999999999885 49999999999999999998876


Q ss_pred             hc
Q 020527          308 HK  309 (325)
Q Consensus       308 ~~  309 (325)
                      ..
T Consensus       233 ~~  234 (265)
T PRK10253        233 TA  234 (265)
T ss_pred             hH
Confidence            53

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.8e-50  Score=367.44  Aligned_cols=217  Identities=24%  Similarity=0.416  Sum_probs=179.5

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHH-hcc
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REK  157 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~-r~~  157 (325)
                      .++++|++++|++   .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... +..
T Consensus         5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (255)
T PRK11300          5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG   81 (255)
T ss_pred             eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence            4899999999974   369999999999999999999999999999999999999999999999999876654443 456


Q ss_pred             eEEEccCCcCcc-ccHHHHHhcCCCCCC----------------C----HHHHHHHHHHcCHHHHHHhCCCCcccccCCC
Q 020527          158 IGFVGQEPQLLQ-MDIKSNIMYGCPKDV----------------K----NEDIEWAAKQAYVHEFILSLPCGYETLVDDD  216 (325)
Q Consensus       158 i~~v~Q~~~l~~-~tv~enl~~~~~~~~----------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (325)
                      ++|+||++.+|+ .|++||+.++.....                .    .+.+.+.++..++.+..++         ...
T Consensus        82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~---------~~~  152 (255)
T PRK11300         82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR---------QAG  152 (255)
T ss_pred             eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC---------Chh
Confidence            999999999885 799999987521000                0    0112222333333333222         236


Q ss_pred             CCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCC
Q 020527          217 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG  295 (325)
Q Consensus       217 ~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G  295 (325)
                      +||||||||++|||||+.+|++|||||||++||+.++..+.+.|.+++++  .|+|||++||+++.+.. ||++++|++|
T Consensus       153 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~--~~~tii~~sH~~~~~~~~~d~i~~l~~g  230 (255)
T PRK11300        153 NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNE--HNVTVLLIEHDMKLVMGISDRIYVVNQG  230 (255)
T ss_pred             hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhh--cCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence            79999999999999999999999999999999999999999999998652  37899999999999865 9999999999


Q ss_pred             EEEEEcChHHHhhc
Q 020527          296 RIIEVGNHAELLHK  309 (325)
Q Consensus       296 ~i~~~g~~~~l~~~  309 (325)
                      ++++.|+++++.+.
T Consensus       231 ~i~~~~~~~~~~~~  244 (255)
T PRK11300        231 TPLANGTPEEIRNN  244 (255)
T ss_pred             eEEecCCHHHHhhC
Confidence            99999999988654

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.6e-50  Score=373.18  Aligned_cols=219  Identities=33%  Similarity=0.572  Sum_probs=185.8

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCC---CeEEECCEeCCCCCHHHHh
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD---GQIYIDGFPLTDLDIRWLR  155 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~---G~I~i~g~~i~~~~~~~~r  155 (325)
                      .|+++|++++|++. ..++++++||+|++||+++|+||||||||||+++|+|+++|++   |+|.++|.++...+...++
T Consensus         5 ~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~   83 (282)
T PRK13640          5 IVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR   83 (282)
T ss_pred             eEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence            48999999999642 2369999999999999999999999999999999999999998   8999999998766555667


Q ss_pred             cceEEEccCCc--CccccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 020527          156 EKIGFVGQEPQ--LLQMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI  228 (325)
Q Consensus       156 ~~i~~v~Q~~~--l~~~tv~enl~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i  228 (325)
                      +++||+||++.  +++.||+||+.++.. .....    +.+.++++.+++.++.++.+         .+|||||+||++|
T Consensus        84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~LS~G~~qrv~l  154 (282)
T PRK13640         84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP---------ANLSGGQKQRVAI  154 (282)
T ss_pred             hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc---------ccCCHHHHHHHHH
Confidence            88999999984  447899999987521 11122    22444566666665555444         6799999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhh
Q 020527          229 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLH  308 (325)
Q Consensus       229 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~  308 (325)
                      ||||+.+|++|||||||++||+.++..+.+.|+++.++  .|+|||++||+++.+..||++++|++|++++.|++++++.
T Consensus       155 aral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~--~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  232 (282)
T PRK13640        155 AGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKK--NNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS  232 (282)
T ss_pred             HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            99999999999999999999999999999999998652  4789999999999987799999999999999999998765


Q ss_pred             c
Q 020527          309 K  309 (325)
Q Consensus       309 ~  309 (325)
                      .
T Consensus       233 ~  233 (282)
T PRK13640        233 K  233 (282)
T ss_pred             C
Confidence            3

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=100.00  E-value=8.1e-51  Score=374.14  Aligned_cols=215  Identities=34%  Similarity=0.499  Sum_probs=181.1

Q ss_pred             EEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHH----Hhc
Q 020527           81 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW----LRE  156 (325)
Q Consensus        81 ~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~----~r~  156 (325)
                      .++|+++.|++.   .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...    .++
T Consensus        26 ~~~~~~~~~~~~---~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~  102 (269)
T cd03294          26 SKEEILKKTGQT---VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK  102 (269)
T ss_pred             hhhhhhhhcCCc---eEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence            577999999753   6999999999999999999999999999999999999999999999999987654332    245


Q ss_pred             ceEEEccCCcCc-cccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527          157 KIGFVGQEPQLL-QMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR  230 (325)
Q Consensus       157 ~i~~v~Q~~~l~-~~tv~enl~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr  230 (325)
                      +++|+||++.+| ..|++||+.++... ...    .+.+.+.++.+++.+.+++.+         .+||||||||++|||
T Consensus       103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~Gq~qrv~lAr  173 (269)
T cd03294         103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP---------DELSGGMQQRVGLAR  173 (269)
T ss_pred             cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc---------ccCCHHHHHHHHHHH
Confidence            799999999888 57999999764210 111    123445556666655555544         579999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhc
Q 020527          231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK  309 (325)
Q Consensus       231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~  309 (325)
                      ||+.+|++|||||||++||+.+++.+.+.|.++.++  .|+|+|++|||++.+.. ||++++|++|++++.|+++++++.
T Consensus       174 al~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~--~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  251 (269)
T cd03294         174 ALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAE--LQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN  251 (269)
T ss_pred             HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence            999999999999999999999999999999998642  47899999999998864 999999999999999999998754

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.4e-50  Score=387.89  Aligned_cols=202  Identities=38%  Similarity=0.577  Sum_probs=171.7

Q ss_pred             ceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHH----hcceEEEccCCcCcc-cc
Q 020527           97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL----REKIGFVGQEPQLLQ-MD  171 (325)
Q Consensus        97 iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~----r~~i~~v~Q~~~l~~-~t  171 (325)
                      +|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|.++...+...+    +++++|+||++.+|+ .|
T Consensus        43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~T  122 (400)
T PRK10070         43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMT  122 (400)
T ss_pred             EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCC
Confidence            7999999999999999999999999999999999999999999999999977664432    467999999999884 79


Q ss_pred             HHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCC
Q 020527          172 IKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATS  246 (325)
Q Consensus       172 v~enl~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts  246 (325)
                      |+||+.++... ...    .+++.++++.+++.++.++.+         .+|||||||||+|||||+.+|++|||||||+
T Consensus       123 v~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~---------~~LSgGq~QRv~LArAL~~~P~iLLLDEPts  193 (400)
T PRK10070        123 VLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP---------DELSGGMRQRVGLARALAINPDILLMDEAFS  193 (400)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc---------ccCCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence            99999875211 111    123344555555555444443         6799999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhc
Q 020527          247 ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK  309 (325)
Q Consensus       247 ~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~  309 (325)
                      +||+.++..+.+.|.+++++  .|+|||++|||++++.. ||++++|++|++++.|++++++..
T Consensus       194 ~LD~~~r~~l~~~L~~l~~~--~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~  255 (400)
T PRK10070        194 ALDPLIRTEMQDELVKLQAK--HQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN  255 (400)
T ss_pred             cCCHHHHHHHHHHHHHHHHH--CCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhC
Confidence            99999999999999998653  47899999999999864 999999999999999999998764

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=100.00  E-value=9.7e-51  Score=362.80  Aligned_cols=208  Identities=34%  Similarity=0.525  Sum_probs=173.0

Q ss_pred             EEEEEEEEECCCCC-CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           80 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        80 i~~~~v~~~y~~~~-~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      |+++|++++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..     .++.+
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i   75 (220)
T cd03293           1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR   75 (220)
T ss_pred             CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence            47899999997511 1369999999999999999999999999999999999999999999999998753     35679


Q ss_pred             EEEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 020527          159 GFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI  232 (325)
Q Consensus       159 ~~v~Q~~~l~~-~tv~enl~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral  232 (325)
                      +|+||++.+|+ .|++||+.++.. ....    .+.+.+.++..++.+.+++.+         .+||||||||++|||||
T Consensus        76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrl~la~al  146 (220)
T cd03293          76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP---------HQLSGGMRQRVALARAL  146 (220)
T ss_pred             EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc---------ccCCHHHHHHHHHHHHH
Confidence            99999998885 799999976421 1111    123444555555555444433         57999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEe--CCEEEEEcCh
Q 020527          233 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVID--DGRIIEVGNH  303 (325)
Q Consensus       233 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~--~G~i~~~g~~  303 (325)
                      +.+|+++||||||++||+.++..+.+.|+++.++  .|+|||++||+++.+. .||++++|+  +|++++.++.
T Consensus       147 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~  218 (220)
T cd03293         147 AVDPDVLLLDEPFSALDALTREQLQEELLDIWRE--TGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV  218 (220)
T ss_pred             HcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH--cCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence            9999999999999999999999999999998642  3789999999999875 499999999  7999988764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=3.3e-51  Score=369.94  Aligned_cols=221  Identities=37%  Similarity=0.536  Sum_probs=193.5

Q ss_pred             cEEEEEEEEECCCCC---------------------CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCC
Q 020527           79 HVQFVNISFHYPSRP---------------------TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG  137 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~---------------------~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G  137 (325)
                      .|+++||+|-|+.+.                     ...-++|+||+|++||++.|.|-||||||||+|++.+|++|++|
T Consensus         4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G   83 (386)
T COG4175           4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG   83 (386)
T ss_pred             eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence            588899998887521                     12357899999999999999999999999999999999999999


Q ss_pred             eEEECCEeCCCCCHHHH----hcceEEEccCCcCc-cccHHHHHhcCCC-----CCCCHHHHHHHHHHcCHHHHHHhCCC
Q 020527          138 QIYIDGFPLTDLDIRWL----REKIGFVGQEPQLL-QMDIKSNIMYGCP-----KDVKNEDIEWAAKQAYVHEFILSLPC  207 (325)
Q Consensus       138 ~I~i~g~~i~~~~~~~~----r~~i~~v~Q~~~l~-~~tv~enl~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (325)
                      +|+++|.++..++.+++    |+++++|||+..|+ +.||.||+.||..     .....++..++++.++++.+-+++| 
T Consensus        84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp-  162 (386)
T COG4175          84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP-  162 (386)
T ss_pred             eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc-
Confidence            99999999998886543    46799999999998 5899999999853     1222344566788888888888877 


Q ss_pred             CcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-c
Q 020527          208 GYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-V  286 (325)
Q Consensus       208 ~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~  286 (325)
                              ++|||||||||.|||||+.+|+|||+|||||+|||--+.++.+.|.++.++  -++|||+||||++++-+ .
T Consensus       163 --------~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~--l~KTIvFitHDLdEAlriG  232 (386)
T COG4175         163 --------NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAK--LKKTIVFITHDLDEALRIG  232 (386)
T ss_pred             --------ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHH--hCCeEEEEecCHHHHHhcc
Confidence                    679999999999999999999999999999999999999999999999775  47899999999999855 8


Q ss_pred             CEEEEEeCCEEEEEcChHHHhhcC
Q 020527          287 DRIVVIDDGRIIEVGNHAELLHKG  310 (325)
Q Consensus       287 d~v~~l~~G~i~~~g~~~~l~~~~  310 (325)
                      |||.+|++|+|+..|+|++++.++
T Consensus       233 ~rIaimkdG~ivQ~Gtp~eIl~~P  256 (386)
T COG4175         233 DRIAIMKDGEIVQVGTPEEILLNP  256 (386)
T ss_pred             ceEEEecCCeEEEeCCHHHHHcCc
Confidence            999999999999999999998753

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2e-50  Score=367.54  Aligned_cols=220  Identities=29%  Similarity=0.486  Sum_probs=179.8

Q ss_pred             ccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-----CCCeEEECCEeCCCCCHH
Q 020527           78 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDLDIR  152 (325)
Q Consensus        78 ~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-----~~G~I~i~g~~i~~~~~~  152 (325)
                      ..|+++||+++|+++   .+|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++...+..
T Consensus         2 ~~l~~~~l~~~~~~~---~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~   78 (250)
T PRK14247          2 NKIEIRDLKVSFGQV---EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVI   78 (250)
T ss_pred             ceEEEEeeEEEECCe---eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHH
Confidence            358999999999753   599999999999999999999999999999999999974     699999999998776666


Q ss_pred             HHhcceEEEccCCcCc-cccHHHHHhcCCCC-C--CCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHH
Q 020527          153 WLREKIGFVGQEPQLL-QMDIKSNIMYGCPK-D--VKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ  224 (325)
Q Consensus       153 ~~r~~i~~v~Q~~~l~-~~tv~enl~~~~~~-~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~Q  224 (325)
                      .+++.|+|+||++.++ ..|++||+.++... .  ...    +.+.++++.+++.+.+..     .......+|||||||
T Consensus        79 ~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~~~~LSgG~~q  153 (250)
T PRK14247         79 ELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKD-----RLDAPAGKLSGGQQQ  153 (250)
T ss_pred             HHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhh-----hhcCCcccCCHHHHH
Confidence            7788999999999866 68999999865211 1  011    122333333333211100     011223679999999


Q ss_pred             HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcCh
Q 020527          225 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNH  303 (325)
Q Consensus       225 Rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~  303 (325)
                      |++|||||+.+|+++||||||++||+.++..+.+.|+++.    +++|+|++|||++.+. .||++++|++|++++.|++
T Consensus       154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~----~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~  229 (250)
T PRK14247        154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK----KDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPT  229 (250)
T ss_pred             HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh----cCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCH
Confidence            9999999999999999999999999999999999999984    2679999999999885 5999999999999999999


Q ss_pred             HHHhhc
Q 020527          304 AELLHK  309 (325)
Q Consensus       304 ~~l~~~  309 (325)
                      +++.+.
T Consensus       230 ~~~~~~  235 (250)
T PRK14247        230 REVFTN  235 (250)
T ss_pred             HHHHcC
Confidence            998764

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=100.00  E-value=1.1e-50  Score=360.74  Aligned_cols=203  Identities=36%  Similarity=0.551  Sum_probs=169.9

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCH---HHHhc
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI---RWLRE  156 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~---~~~r~  156 (325)
                      |+++|++++|+++  ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.   ..+++
T Consensus         2 l~~~~l~~~~~~~--~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~   79 (214)
T TIGR02673         2 IEFHNVSKAYPGG--VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR   79 (214)
T ss_pred             EEEEeeeEEeCCC--ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence            7899999999522  369999999999999999999999999999999999999999999999999876543   23567


Q ss_pred             ceEEEccCCcCc-cccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527          157 KIGFVGQEPQLL-QMDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR  230 (325)
Q Consensus       157 ~i~~v~Q~~~l~-~~tv~enl~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr  230 (325)
                      .++|+||++.+| ..|++||+.++.. ....    .+.+.++++..++.+..++.+         .+||||||||++|||
T Consensus        80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~la~  150 (214)
T TIGR02673        80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP---------EQLSGGEQQRVAIAR  150 (214)
T ss_pred             heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh---------hhCCHHHHHHHHHHH
Confidence            899999999888 4799999976421 0111    123344555555554444333         579999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCE
Q 020527          231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR  296 (325)
Q Consensus       231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~  296 (325)
                      ||+.+|++|||||||++||+.++..+.+.|+++++   +|+|+|++||+++.+.. ||++++|++|+
T Consensus       151 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~tH~~~~~~~~~d~i~~l~~G~  214 (214)
T TIGR02673       151 AIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK---RGTTVIVATHDLSLVDRVAHRVIILDDGR  214 (214)
T ss_pred             HHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence            99999999999999999999999999999999864   37899999999999875 99999999984

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.8e-50  Score=366.55  Aligned_cols=219  Identities=32%  Similarity=0.470  Sum_probs=178.3

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-----CCCeEEECCEeCCC--CCH
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--LDI  151 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-----~~G~I~i~g~~i~~--~~~  151 (325)
                      .|+++|++++|++.   .+|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|+++|+++..  ...
T Consensus         7 ~l~~~~l~~~~~~~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~   83 (254)
T PRK14273          7 IIETENLNLFYTDF---KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI   83 (254)
T ss_pred             eEEEeeeEEEeCCc---eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence            59999999999743   599999999999999999999999999999999999997     48999999998753  233


Q ss_pred             HHHhcceEEEccCCcCccccHHHHHhcCCCC-C-CC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527          152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-D-VK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR  225 (325)
Q Consensus       152 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~-~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR  225 (325)
                      ..+++.|+|+||++.+|..||+||+.++... . ..    .+.+..+++.+++.+.+..     .......+||||||||
T Consensus        84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-----~~~~~~~~LSgG~~qr  158 (254)
T PRK14273         84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKD-----KLNTNALSLSGGQQQR  158 (254)
T ss_pred             HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHH-----HHhCCcccCCHHHHHH
Confidence            4567889999999988889999999875311 1 11    1223334444433211110     0111236799999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChH
Q 020527          226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA  304 (325)
Q Consensus       226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~  304 (325)
                      ++|||||+.+|++|||||||++||+.++..+.+.|+++++    +.|+|++||+++.+.. |||+++|++|++++.|+++
T Consensus       159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~----~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~  234 (254)
T PRK14273        159 LCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE----SYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTD  234 (254)
T ss_pred             HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc----CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence            9999999999999999999999999999999999999842    5799999999999865 9999999999999999999


Q ss_pred             HHhhc
Q 020527          305 ELLHK  309 (325)
Q Consensus       305 ~l~~~  309 (325)
                      ++.++
T Consensus       235 ~~~~~  239 (254)
T PRK14273        235 ELFFN  239 (254)
T ss_pred             HHHhC
Confidence            98754

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=100.00  E-value=1.3e-50  Score=359.63  Aligned_cols=204  Identities=27%  Similarity=0.481  Sum_probs=172.3

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      |+++|++++|+++   ++++|+||+|++| +++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..+++.++
T Consensus         1 i~~~~~~~~~~~~---~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~   75 (211)
T cd03264           1 LQLENLTKRYGKK---RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG   75 (211)
T ss_pred             CEEEEEEEEECCE---EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence            4789999999643   5999999999999 99999999999999999999999999999999999887654 56678899


Q ss_pred             EEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 020527          160 FVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL  233 (325)
Q Consensus       160 ~v~Q~~~l~~-~tv~enl~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~  233 (325)
                      |+||++.+|. .|++||+.+... ....    .+.+.++++..++.+..+..+         .+||||||||++|||||+
T Consensus        76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~al~  146 (211)
T cd03264          76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKI---------GSLSGGMRRRVGIAQALV  146 (211)
T ss_pred             EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCch---------hhCCHHHHHHHHHHHHHh
Confidence            9999999885 699999976311 0111    223445566666655544333         579999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEc
Q 020527          234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVG  301 (325)
Q Consensus       234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g  301 (325)
                      .+|+++||||||++||+.+++.+.+.|+++++    +.|+|++|||++.+. .|||+++|++|++++.|
T Consensus       147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~----~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g  211 (211)
T cd03264         147 GDPSILIVDEPTAGLDPEERIRFRNLLSELGE----DRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG  211 (211)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC----CCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence            99999999999999999999999999999863    479999999999986 49999999999998754

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.4e-50  Score=371.11  Aligned_cols=216  Identities=28%  Similarity=0.485  Sum_probs=179.4

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCC--CCHHHHhcc
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD--LDIRWLREK  157 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~--~~~~~~r~~  157 (325)
                      |+++||+++|++.  +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..  .+...+++.
T Consensus         2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~   79 (275)
T PRK13639          2 LETRDLKYSYPDG--TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT   79 (275)
T ss_pred             EEEEEEEEEeCCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence            7899999999632  359999999999999999999999999999999999999999999999999852  223456788


Q ss_pred             eEEEccCC--cCccccHHHHHhcCCCC-CCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527          158 IGFVGQEP--QLLQMDIKSNIMYGCPK-DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR  230 (325)
Q Consensus       158 i~~v~Q~~--~l~~~tv~enl~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr  230 (325)
                      |+|+||++  .++..|++||+.++... ....    +.+.++++..++.++.++.         ..+|||||+||++|||
T Consensus        80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~---------~~~LS~Gq~qrv~lar  150 (275)
T PRK13639         80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKP---------PHHLSGGQKKRVAIAG  150 (275)
T ss_pred             eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCC---------hhhCCHHHHHHHHHHH
Confidence            99999997  35678999999875211 1111    2233344444444333322         3679999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhhc
Q 020527          231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK  309 (325)
Q Consensus       231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~  309 (325)
                      ||+.+|+++||||||++||+.++..+.+.|.++.+   +|.|||++|||++.+. .||++++|++|++++.|++++++..
T Consensus       151 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~---~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  227 (275)
T PRK13639        151 ILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK---EGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD  227 (275)
T ss_pred             HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence            99999999999999999999999999999999864   3789999999999986 5999999999999999999988754

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=100.00  E-value=3.7e-50  Score=368.99  Aligned_cols=228  Identities=30%  Similarity=0.410  Sum_probs=181.9

Q ss_pred             cEEEEEEEEECCCC------CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHH
Q 020527           79 HVQFVNISFHYPSR------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR  152 (325)
Q Consensus        79 ~i~~~~v~~~y~~~------~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~  152 (325)
                      .|+++||+++|+..      .++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus         2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~   81 (265)
T TIGR02769         2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK   81 (265)
T ss_pred             eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence            38999999999631      124699999999999999999999999999999999999999999999999998765543


Q ss_pred             ---HHhcceEEEccCCc--Cc-cccHHHHHhcCCC--CCCC----HHHHHHHHHHcCHH-HHHHhCCCCcccccCCCCCC
Q 020527          153 ---WLREKIGFVGQEPQ--LL-QMDIKSNIMYGCP--KDVK----NEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLS  219 (325)
Q Consensus       153 ---~~r~~i~~v~Q~~~--l~-~~tv~enl~~~~~--~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~LS  219 (325)
                         .+++.|+|+||++.  ++ ..|++||+.++..  ....    .+.+.++++..++. ...+         ....+||
T Consensus        82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~---------~~~~~LS  152 (265)
T TIGR02769        82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDAD---------KLPRQLS  152 (265)
T ss_pred             HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhh---------CChhhCC
Confidence               35678999999973  44 4799999965311  0111    11223333333332 1222         2235799


Q ss_pred             hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEE
Q 020527          220 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRII  298 (325)
Q Consensus       220 gGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~  298 (325)
                      ||||||++|||||+.+|++|||||||++||+.++..+.+.|+++.++  .|+|||++|||++.+. .||++++|++|+++
T Consensus       153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~--~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~  230 (265)
T TIGR02769       153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQA--FGTAYLFITHDLRLVQSFCQRVAVMDKGQIV  230 (265)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCcEEEEEeCCHHHHHHHhcEEEEEeCCEEE
Confidence            99999999999999999999999999999999999999999998752  3789999999999986 49999999999999


Q ss_pred             EEcChHHHhhcCH-HHHHHH
Q 020527          299 EVGNHAELLHKGR-LYAKLV  317 (325)
Q Consensus       299 ~~g~~~~l~~~~~-~~~~~~  317 (325)
                      +.|+++++....+ .++.+.
T Consensus       231 ~~g~~~~~~~~~~~~~~~~~  250 (265)
T TIGR02769       231 EECDVAQLLSFKHPAGRNLQ  250 (265)
T ss_pred             EECCHHHHcCCCCHHHHHHH
Confidence            9999999987444 344343

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=1.1e-50  Score=359.93  Aligned_cols=203  Identities=37%  Similarity=0.625  Sum_probs=169.2

Q ss_pred             EEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 020527           81 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF  160 (325)
Q Consensus        81 ~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~  160 (325)
                      +++|++++|++. .+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus         1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   79 (211)
T cd03225           1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL   79 (211)
T ss_pred             CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence            378999999752 1369999999999999999999999999999999999999999999999999876665667788999


Q ss_pred             EccCCc--CccccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 020527          161 VGQEPQ--LLQMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL  233 (325)
Q Consensus       161 v~Q~~~--l~~~tv~enl~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~  233 (325)
                      +||++.  ++..|++||+.++... ...    ...+.+.++..++.+.+++.+         ..||||||||++|||||+
T Consensus        80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~laral~  150 (211)
T cd03225          80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSP---------FTLSGGQKQRVAIAGVLA  150 (211)
T ss_pred             EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCc---------ccCCHHHHHHHHHHHHHh
Confidence            999984  4578999999764211 111    122334455555554444333         579999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCE
Q 020527          234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR  296 (325)
Q Consensus       234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~  296 (325)
                      .+|++|||||||++||+.++..+.+.|.++++   +|+|||++|||++.+.. ||++++|++|+
T Consensus       151 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~---~~~tvi~~sH~~~~~~~~~d~i~~l~~G~  211 (211)
T cd03225         151 MDPDILLLDEPTAGLDPAGRRELLELLKKLKA---EGKTIIIVTHDLDLLLELADRVIVLEDGK  211 (211)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence            99999999999999999999999999999864   37899999999999876 99999999984

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.3e-50  Score=366.58  Aligned_cols=216  Identities=31%  Similarity=0.493  Sum_probs=180.9

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCC---------
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD---------  150 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~---------  150 (325)
                      |+++||+++|++   .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++         
T Consensus         1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~   77 (252)
T TIGR03005         1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA   77 (252)
T ss_pred             CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence            478999999974   36999999999999999999999999999999999999999999999999886432         


Q ss_pred             ----HHHHhcceEEEccCCcCc-cccHHHHHhcCCC--CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCC
Q 020527          151 ----IRWLREKIGFVGQEPQLL-QMDIKSNIMYGCP--KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLS  219 (325)
Q Consensus       151 ----~~~~r~~i~~v~Q~~~l~-~~tv~enl~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LS  219 (325)
                          ...+++.++|+||++.+| ..|+.||+.++..  ....    .+.+.++++..++.+.+++.+         .+||
T Consensus        78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS  148 (252)
T TIGR03005        78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMP---------AQLS  148 (252)
T ss_pred             chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcCh---------hhcC
Confidence                134578899999999888 5899999986411  0111    122344455555554444433         5799


Q ss_pred             hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEE
Q 020527          220 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRII  298 (325)
Q Consensus       220 gGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~  298 (325)
                      ||||||++|||||+.+|++|||||||++||+.++..+.+.|+++.++  .|.|+|++|||++.+. .|||+++|++|+++
T Consensus       149 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~  226 (252)
T TIGR03005       149 GGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASE--HDLTMLLVTHEMGFAREFADRVCFFDKGRIV  226 (252)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence            99999999999999999999999999999999999999999998653  3789999999999985 59999999999999


Q ss_pred             EEcChHHHhhc
Q 020527          299 EVGNHAELLHK  309 (325)
Q Consensus       299 ~~g~~~~l~~~  309 (325)
                      +.|+++++...
T Consensus       227 ~~g~~~~~~~~  237 (252)
T TIGR03005       227 EQGKPDEIFRQ  237 (252)
T ss_pred             EeCCHHHHhcC
Confidence            99999988754

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK10908 cell division protein FtsE; Provisional

Probab=100.00  E-value=2.3e-50  Score=360.81  Aligned_cols=206  Identities=28%  Similarity=0.468  Sum_probs=171.8

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHH---HHhc
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLRE  156 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~---~~r~  156 (325)
                      |+++|++++|++.  +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..   .+++
T Consensus         2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~   79 (222)
T PRK10908          2 IRFEHVSKAYLGG--RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR   79 (222)
T ss_pred             EEEEeeEEEecCC--CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence            7899999999422  3699999999999999999999999999999999999999999999999998765432   3577


Q ss_pred             ceEEEccCCcCc-cccHHHHHhcCCC-CCCCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527          157 KIGFVGQEPQLL-QMDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR  230 (325)
Q Consensus       157 ~i~~v~Q~~~l~-~~tv~enl~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr  230 (325)
                      .++|+||++.++ ..|++||+.++.. .....+    .+.++++..++.+..++.+         .+||||||||++|||
T Consensus        80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~lar  150 (222)
T PRK10908         80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFP---------IQLSGGEQQRVGIAR  150 (222)
T ss_pred             heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCc---------hhCCHHHHHHHHHHH
Confidence            899999999875 6899999987521 111111    2334455555554444333         579999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEE
Q 020527          231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIE  299 (325)
Q Consensus       231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~  299 (325)
                      ||+.+|++|||||||++||+.+++.+.+.|.++++   ++.|+|++|||++.+.. ||++++|++|+++.
T Consensus       151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  217 (222)
T PRK10908        151 AVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR---VGVTVLMATHDIGLISRRSYRMLTLSDGHLHG  217 (222)
T ss_pred             HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence            99999999999999999999999999999999864   37899999999999875 99999999999854

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.8e-50  Score=369.65  Aligned_cols=219  Identities=31%  Similarity=0.495  Sum_probs=182.7

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .|+++|++++|++. .+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++++
T Consensus         7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i   85 (269)
T PRK13648          7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI   85 (269)
T ss_pred             eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence            48999999999753 23599999999999999999999999999999999999999999999999998776666778899


Q ss_pred             EEEccCCc-Cc-cccHHHHHhcCCCC-CCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 020527          159 GFVGQEPQ-LL-QMDIKSNIMYGCPK-DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA  231 (325)
Q Consensus       159 ~~v~Q~~~-l~-~~tv~enl~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra  231 (325)
                      +|+||++. +| ..|+.+|+.++... ....    +.+.++++..++.++.++.         ..+||||||||++||||
T Consensus        86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~qrl~lara  156 (269)
T PRK13648         86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYE---------PNALSGGQKQRVAIAGV  156 (269)
T ss_pred             eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCC---------cccCCHHHHHHHHHHHH
Confidence            99999985 44 57899999875311 1111    1223344444444333322         35799999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhc
Q 020527          232 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK  309 (325)
Q Consensus       232 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~  309 (325)
                      ++.+|++|||||||++||+.++..+.+.|++++++  .|+|+|++||+++.+..|||+++|++|++++.|+++++...
T Consensus       157 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~--~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  232 (269)
T PRK13648        157 LALNPSVIILDEATSMLDPDARQNLLDLVRKVKSE--HNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH  232 (269)
T ss_pred             HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence            99999999999999999999999999999998642  37899999999998867999999999999999999988664

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.2e-50  Score=365.43  Aligned_cols=219  Identities=30%  Similarity=0.456  Sum_probs=181.0

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC---CCCCeEEECCEeCCCCCHHHHh
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE---PSDGQIYIDGFPLTDLDIRWLR  155 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~---~~~G~I~i~g~~i~~~~~~~~r  155 (325)
                      .++++|+++.|+++   .+|+|+||+|++||+++|+||||||||||+++|+|+++   |++|+|.++|+++...+....+
T Consensus         2 ~~~~~~l~~~~~~~---~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~   78 (246)
T PRK14269          2 IAKTTNLNLFYGKK---QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR   78 (246)
T ss_pred             ceeeeeeEEEECCE---eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence            37899999999753   59999999999999999999999999999999999984   6999999999999776666677


Q ss_pred             cceEEEccCCcCccccHHHHHhcCCCC-CC------CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 020527          156 EKIGFVGQEPQLLQMDIKSNIMYGCPK-DV------KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI  228 (325)
Q Consensus       156 ~~i~~v~Q~~~l~~~tv~enl~~~~~~-~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i  228 (325)
                      +.++|+||++.+|+.|++||+.++... ..      ..+++.+.++.+++.+.+...     ......+||||||||++|
T Consensus        79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~~~~LS~G~~qrv~l  153 (246)
T PRK14269         79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDK-----LKQNALALSGGQQQRLCI  153 (246)
T ss_pred             hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHH-----hcCCcccCCHHHHHHHHH
Confidence            889999999999988999999875211 00      011233344444443221110     111235799999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHh
Q 020527          229 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELL  307 (325)
Q Consensus       229 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~  307 (325)
                      ||||+.+|+++||||||++||+.++..+.+.|.++.    +++|+|++||+++.+. .||++++|++|++++.|++++++
T Consensus       154 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~----~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  229 (246)
T PRK14269        154 ARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS----HNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFF  229 (246)
T ss_pred             HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh----CCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHH
Confidence            999999999999999999999999999999999984    2689999999999886 59999999999999999999987


Q ss_pred             hc
Q 020527          308 HK  309 (325)
Q Consensus       308 ~~  309 (325)
                      +.
T Consensus       230 ~~  231 (246)
T PRK14269        230 EN  231 (246)
T ss_pred             hC
Confidence            64

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=100.00  E-value=4.6e-50  Score=360.24  Aligned_cols=211  Identities=28%  Similarity=0.421  Sum_probs=174.6

Q ss_pred             cEEEEEEEEECCCCCC-CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHH---H
Q 020527           79 HVQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW---L  154 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~-~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~---~  154 (325)
                      .|+++|++++|++... .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...   .
T Consensus         6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~   85 (228)
T PRK10584          6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL   85 (228)
T ss_pred             eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence            4899999999975211 24999999999999999999999999999999999999999999999999987665432   2


Q ss_pred             -hcceEEEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 020527          155 -REKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA  227 (325)
Q Consensus       155 -r~~i~~v~Q~~~l~~-~tv~enl~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~  227 (325)
                       ++.++|+||++.+++ .|++||+.++.. ....    .+++.++++..++.+.+++.+         ..||||||||++
T Consensus        86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~Ge~qrl~  156 (228)
T PRK10584         86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP---------AQLSGGEQQRVA  156 (228)
T ss_pred             HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh---------hhCCHHHHHHHH
Confidence             357999999998885 799999976421 1111    223444555555555444433         579999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEE
Q 020527          228 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEV  300 (325)
Q Consensus       228 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~  300 (325)
                      |||||+.+|++|||||||++||+.++..+.+.|++++++  .|.|||++|||++.+..||++++|++|++++.
T Consensus       157 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~  227 (228)
T PRK10584        157 LARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNRE--HGTTLILVTHDLQLAARCDRRLRLVNGQLQEE  227 (228)
T ss_pred             HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence            999999999999999999999999999999999998653  37899999999998877999999999999753

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=100.00  E-value=5.9e-50  Score=359.95  Aligned_cols=213  Identities=27%  Similarity=0.439  Sum_probs=176.3

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHH-Hhcce
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREKI  158 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~-~r~~i  158 (325)
                      |+++||++.|+++   ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus         1 l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i   77 (230)
T TIGR03410         1 LEVSNLNVYYGQS---HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI   77 (230)
T ss_pred             CEEEeEEEEeCCe---EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence            4789999999743   6999999999999999999999999999999999999999999999999987665443 35689


Q ss_pred             EEEccCCcCcc-ccHHHHHhcCCCCC-CC-HHHHHHHHHHcC-HHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 020527          159 GFVGQEPQLLQ-MDIKSNIMYGCPKD-VK-NEDIEWAAKQAY-VHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR  234 (325)
Q Consensus       159 ~~v~Q~~~l~~-~tv~enl~~~~~~~-~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~  234 (325)
                      +|+||++.+|+ .|+.||+.++.... .. .+...+.++..+ +.+..++         ...+||||||||++|||||+.
T Consensus        78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~---------~~~~LS~G~~qrv~la~al~~  148 (230)
T TIGR03410        78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGR---------RGGDLSGGQQQQLAIARALVT  148 (230)
T ss_pred             EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhC---------ChhhCCHHHHHHHHHHHHHhc
Confidence            99999999885 69999998652211 11 111222333322 2222222         225799999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHH
Q 020527          235 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL  306 (325)
Q Consensus       235 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l  306 (325)
                      +|+++||||||++||+.++..+.+.|.+++++  .++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus       149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~  219 (230)
T TIGR03410       149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAE--GGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL  219 (230)
T ss_pred             CCCEEEecCCcccCCHHHHHHHHHHHHHHHHc--CCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence            99999999999999999999999999998652  37899999999999875 999999999999999999887

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=100.00  E-value=2.5e-50  Score=376.52  Aligned_cols=213  Identities=22%  Similarity=0.416  Sum_probs=179.4

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .++++|++++|++   +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....+++++
T Consensus         2 ~l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~i   77 (301)
T TIGR03522         2 SIRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNI   77 (301)
T ss_pred             EEEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhce
Confidence            4899999999974   369999999999999999999999999999999999999999999999999865 344567889


Q ss_pred             EEEccCCcCc-cccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 020527          159 GFVGQEPQLL-QMDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI  232 (325)
Q Consensus       159 ~~v~Q~~~l~-~~tv~enl~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral  232 (325)
                      ||+||++.++ ..|+.||+.+... ....    .+.+.++++.+++.+..++.         ...||||||||++|||||
T Consensus        78 g~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~---------~~~LS~G~~qrv~la~al  148 (301)
T TIGR03522        78 GYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKK---------IGQLSKGYRQRVGLAQAL  148 (301)
T ss_pred             EEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCc---------hhhCCHHHHHHHHHHHHH
Confidence            9999999988 4799999975311 1111    12233444444444433322         257999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527          233 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH  308 (325)
Q Consensus       233 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~  308 (325)
                      +.+|++|||||||+|||+.+++.+.+.++++++    ++|||++||+++++.. ||||++|++|+++..|+++++..
T Consensus       149 ~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~----~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  221 (301)
T TIGR03522       149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK----DKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA  221 (301)
T ss_pred             hcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC----CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence            999999999999999999999999999999842    5899999999998865 99999999999999999999854

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.9e-50  Score=371.64  Aligned_cols=222  Identities=29%  Similarity=0.463  Sum_probs=177.9

Q ss_pred             EEEEEEEEECCCCC--CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCC----CHHH
Q 020527           80 VQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL----DIRW  153 (325)
Q Consensus        80 i~~~~v~~~y~~~~--~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~----~~~~  153 (325)
                      |+++||+++|++..  .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...    +...
T Consensus         3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   82 (280)
T PRK13649          3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ   82 (280)
T ss_pred             EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence            89999999997421  13599999999999999999999999999999999999999999999999988653    2345


Q ss_pred             HhcceEEEccCC--cCccccHHHHHhcCCC-CCCCHHHHHHHHHHcCHHHHHHhCCCC-cccccCCCCCChHHHHHHHHH
Q 020527          154 LREKIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCG-YETLVDDDLLSGGQKQRIAIA  229 (325)
Q Consensus       154 ~r~~i~~v~Q~~--~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~LSgGq~QRv~iA  229 (325)
                      +++.|+|+||++  .+|+.|++||+.++.. .....+....     .+.++++.+... ........+||||||||++||
T Consensus        83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la  157 (280)
T PRK13649         83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEA-----LAREKLALVGISESLFEKNPFELSGGQMRRVAIA  157 (280)
T ss_pred             HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHH
Confidence            678899999997  4677899999986421 1111211111     112233332221 011222367999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527          230 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH  308 (325)
Q Consensus       230 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~  308 (325)
                      |||+.+|++|||||||++||+.+++.+.+.|+++++   .|+|||++||+++.+.. ||++++|++|++++.|++++++.
T Consensus       158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  234 (280)
T PRK13649        158 GILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ---SGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ  234 (280)
T ss_pred             HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            999999999999999999999999999999999864   37899999999998864 99999999999999999988765


Q ss_pred             c
Q 020527          309 K  309 (325)
Q Consensus       309 ~  309 (325)
                      .
T Consensus       235 ~  235 (280)
T PRK13649        235 D  235 (280)
T ss_pred             C
Confidence            4

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5e-50  Score=363.19  Aligned_cols=216  Identities=28%  Similarity=0.452  Sum_probs=178.5

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCC------CCHH
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD------LDIR  152 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~------~~~~  152 (325)
                      .|+++|++++|+++   .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..      ....
T Consensus         2 ~l~~~~l~~~~~~~---~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   78 (242)
T PRK11124          2 SIQLNGINCFYGAH---QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR   78 (242)
T ss_pred             EEEEEeeEEEECCe---eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence            48999999999753   59999999999999999999999999999999999999999999999998731      1234


Q ss_pred             HHhcceEEEccCCcCcc-ccHHHHHhcCCC--CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527          153 WLREKIGFVGQEPQLLQ-MDIKSNIMYGCP--KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR  225 (325)
Q Consensus       153 ~~r~~i~~v~Q~~~l~~-~tv~enl~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR  225 (325)
                      .++++|+|+||++.+|+ .|++||+.+...  ....    ...+.+.++..++.+++++.+         .+||||||||
T Consensus        79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS~G~~qr  149 (242)
T PRK11124         79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFP---------LHLSGGQQQR  149 (242)
T ss_pred             HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh---------hhCCHHHHHH
Confidence            55778999999999884 799999964211  0111    112333444445544444333         5799999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChH
Q 020527          226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA  304 (325)
Q Consensus       226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~  304 (325)
                      ++|||||+.+|+++||||||++||+.++..+.+.|+++++   +|+|+|++|||++.+.. ||++++|++|++++.|+++
T Consensus       150 v~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~  226 (242)
T PRK11124        150 VAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE---TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS  226 (242)
T ss_pred             HHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence            9999999999999999999999999999999999999864   37899999999999864 9999999999999999988


Q ss_pred             HHhhc
Q 020527          305 ELLHK  309 (325)
Q Consensus       305 ~l~~~  309 (325)
                      ++...
T Consensus       227 ~~~~~  231 (242)
T PRK11124        227 CFTQP  231 (242)
T ss_pred             HhcCc
Confidence            87543

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.1e-50  Score=372.46  Aligned_cols=226  Identities=28%  Similarity=0.479  Sum_probs=178.4

Q ss_pred             ccEEEEEEEEECCCCC--CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCC----C-C
Q 020527           78 GHVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD----L-D  150 (325)
Q Consensus        78 ~~i~~~~v~~~y~~~~--~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~----~-~  150 (325)
                      +.|+++|++++|+++.  ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..    . +
T Consensus         5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~   84 (289)
T PRK13645          5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE   84 (289)
T ss_pred             ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence            3589999999997531  1259999999999999999999999999999999999999999999999998742    1 2


Q ss_pred             HHHHhcceEEEccCCc--CccccHHHHHhcCCCC-CCCHHHHHHHHHHcCHHHHHHhCCC-CcccccCCCCCChHHHHHH
Q 020527          151 IRWLREKIGFVGQEPQ--LLQMDIKSNIMYGCPK-DVKNEDIEWAAKQAYVHEFILSLPC-GYETLVDDDLLSGGQKQRI  226 (325)
Q Consensus       151 ~~~~r~~i~~v~Q~~~--l~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~LSgGq~QRv  226 (325)
                      ...+++.|+|+||++.  ++..|++||+.++... ....+....     .+.++++.+.. .........+||||||||+
T Consensus        85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv  159 (289)
T PRK13645         85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYK-----KVPELLKLVQLPEDYVKRSPFELSGGQKRRV  159 (289)
T ss_pred             HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCChhHhcCChhhCCHHHHHHH
Confidence            3456778999999973  5677999999875211 111211111     11222332221 0011122367999999999


Q ss_pred             HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHH
Q 020527          227 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAE  305 (325)
Q Consensus       227 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~  305 (325)
                      +|||||+.+|++|||||||++||+.+++.+.+.|+++.++  .|+|||++||+++.+. .||++++|++|++++.|++++
T Consensus       160 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~  237 (289)
T PRK13645        160 ALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKE--YKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFE  237 (289)
T ss_pred             HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            9999999999999999999999999999999999998652  3789999999999885 599999999999999999988


Q ss_pred             HhhcC
Q 020527          306 LLHKG  310 (325)
Q Consensus       306 l~~~~  310 (325)
                      +++..
T Consensus       238 ~~~~~  242 (289)
T PRK13645        238 IFSNQ  242 (289)
T ss_pred             HhcCH
Confidence            76543

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=100.00  E-value=4.7e-50  Score=366.51  Aligned_cols=206  Identities=32%  Similarity=0.445  Sum_probs=176.1

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .|+++|++++|+++   .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.     .+++.+
T Consensus        12 ~l~i~~l~~~~~~~---~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i   83 (257)
T PRK11247         12 PLLLNAVSKRYGER---TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT   83 (257)
T ss_pred             cEEEEEEEEEECCc---ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence            48999999999753   6999999999999999999999999999999999999999999999998753     346789


Q ss_pred             EEEccCCcCcc-ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC
Q 020527          159 GFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA  237 (325)
Q Consensus       159 ~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~  237 (325)
                      +|+||++.+|+ .||+||+.++.. ....+++.++++..++.+..++.+         .+||||||||++|||||+.+|+
T Consensus        84 ~~v~q~~~l~~~~tv~enl~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGqkqrl~laraL~~~p~  153 (257)
T PRK11247         84 RLMFQDARLLPWKKVIDNVGLGLK-GQWRDAALQALAAVGLADRANEWP---------AALSGGQKQRVALARALIHRPG  153 (257)
T ss_pred             EEEecCccCCCCCcHHHHHHhccc-chHHHHHHHHHHHcCChhHhcCCh---------hhCCHHHHHHHHHHHHHhcCCC
Confidence            99999998885 799999987532 112334455666666655444433         5799999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChH
Q 020527          238 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA  304 (325)
Q Consensus       238 llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~  304 (325)
                      +|||||||++||+.++..+.+.|.++.++  .++|||++|||++.+. .||++++|++|++++.++.+
T Consensus       154 lllLDEPt~~LD~~~~~~l~~~L~~~~~~--~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~  219 (257)
T PRK11247        154 LLLLDEPLGALDALTRIEMQDLIESLWQQ--HGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD  219 (257)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence            99999999999999999999999998643  4789999999999885 49999999999999887654

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=100.00  E-value=7.5e-50  Score=361.94  Aligned_cols=223  Identities=24%  Similarity=0.419  Sum_probs=178.2

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHH-Hhcc
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK  157 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~-~r~~  157 (325)
                      .|+++|++++|++.   ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.
T Consensus         2 ~i~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~   78 (242)
T TIGR03411         2 ILYLEGLSVSFDGF---KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG   78 (242)
T ss_pred             eEEEEeeEEEcCCe---EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcC
Confidence            37999999999753   5999999999999999999999999999999999999999999999999887665443 3457


Q ss_pred             eEEEccCCcCcc-ccHHHHHhcCCCCCCCH-HH---HHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 020527          158 IGFVGQEPQLLQ-MDIKSNIMYGCPKDVKN-ED---IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI  232 (325)
Q Consensus       158 i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral  232 (325)
                      ++|+||++.+|+ .|++||+.++....... ..   .........+.++++.+............|||||+||++||||+
T Consensus        79 i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral  158 (242)
T TIGR03411        79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLL  158 (242)
T ss_pred             eeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence            999999999885 69999998752211000 00   00000111223344443322111222367999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527          233 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH  308 (325)
Q Consensus       233 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~  308 (325)
                      +.+|++|||||||++||+.++..+.+.|+++.+    ++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus       159 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~----~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~  231 (242)
T TIGR03411       159 MQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG----KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA  231 (242)
T ss_pred             hcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc----CCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence            999999999999999999999999999999853    5799999999999865 99999999999999999998865

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.8e-50  Score=366.26  Aligned_cols=219  Identities=32%  Similarity=0.540  Sum_probs=178.2

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC-----CCCCeEEECCEeCCC--CCH
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LDI  151 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~-----~~~G~I~i~g~~i~~--~~~  151 (325)
                      .|+++||+++|++   +.+|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|+++..  .+.
T Consensus         6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~   82 (253)
T PRK14242          6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV   82 (253)
T ss_pred             EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence            4899999999974   359999999999999999999999999999999999974     589999999998854  233


Q ss_pred             HHHhcceEEEccCCcCccccHHHHHhcCCC-CCC-C----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527          152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDV-K----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR  225 (325)
Q Consensus       152 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~-~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR  225 (325)
                      ..+++.++|+||++.+|+.|++||+.++.. ... .    .+.+..+++..++.+.+...     ......+||||||||
T Consensus        83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~~~~LSgGq~qr  157 (253)
T PRK14242         83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDR-----LHESALGLSGGQQQR  157 (253)
T ss_pred             HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHH-----hhCCcccCCHHHHHH
Confidence            456788999999998887899999987521 111 1    12233344444442211100     011235799999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChH
Q 020527          226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA  304 (325)
Q Consensus       226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~  304 (325)
                      |+|||||+.+|++|||||||++||+.++..+.+.|+++.+    ++|||++|||++.+. .||++++|++|++++.|+++
T Consensus       158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~----~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~  233 (253)
T PRK14242        158 LCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA----RYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTE  233 (253)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc----CCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence            9999999999999999999999999999999999999842    579999999999986 49999999999999999999


Q ss_pred             HHhhc
Q 020527          305 ELLHK  309 (325)
Q Consensus       305 ~l~~~  309 (325)
                      ++++.
T Consensus       234 ~~~~~  238 (253)
T PRK14242        234 QIFTR  238 (253)
T ss_pred             HHHcC
Confidence            98754

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=100.00  E-value=1.7e-50  Score=377.78  Aligned_cols=206  Identities=26%  Similarity=0.414  Sum_probs=171.6

Q ss_pred             EECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCc
Q 020527           87 FHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQ  166 (325)
Q Consensus        87 ~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~  166 (325)
                      |+|++   +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ....+++++||+||++.
T Consensus         1 k~y~~---~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~   76 (302)
T TIGR01188         1 KVYGD---FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYAS   76 (302)
T ss_pred             CeeCC---eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCC
Confidence            35653   369999999999999999999999999999999999999999999999999865 34456788999999998


Q ss_pred             Cc-cccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEE
Q 020527          167 LL-QMDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILL  240 (325)
Q Consensus       167 l~-~~tv~enl~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~lll  240 (325)
                      ++ ..|++||+.+... ....    .+.+.++++.+++.+..++.         ..+||||||||++|||||+.+|++||
T Consensus        77 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LSgG~~qrv~la~al~~~p~lll  147 (302)
T TIGR01188        77 VDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRP---------VGTYSGGMRRRLDIAASLIHQPDVLF  147 (302)
T ss_pred             CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCc---------hhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            88 4799999976321 1111    12233444444444333322         35799999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527          241 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH  308 (325)
Q Consensus       241 lDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~  308 (325)
                      |||||+|||+.++..+.+.|+++++   +|+|||++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus       148 LDEPt~gLD~~~~~~l~~~l~~~~~---~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~  213 (302)
T TIGR01188       148 LDEPTTGLDPRTRRAIWDYIRALKE---EGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKR  213 (302)
T ss_pred             EeCCCcCCCHHHHHHHHHHHHHHHh---CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence            9999999999999999999999964   37899999999999865 99999999999999999998754

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.1e-49  Score=358.78  Aligned_cols=214  Identities=32%  Similarity=0.490  Sum_probs=182.0

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      |+++||+++|++.     ..|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.  .++.++
T Consensus         2 l~~~~l~~~~~~~-----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~   74 (232)
T PRK10771          2 LKLTDITWLYHHL-----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVS   74 (232)
T ss_pred             eEEEEEEEEECCc-----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEE
Confidence            7899999999642     239999999999999999999999999999999999999999999998865433  246799


Q ss_pred             EEccCCcCcc-ccHHHHHhcCCCCC-----CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 020527          160 FVGQEPQLLQ-MDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL  233 (325)
Q Consensus       160 ~v~Q~~~l~~-~tv~enl~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~  233 (325)
                      |+||++.+|+ .|+.||+.++....     ...+++.++++..++.+.+++.+         ..||||||||++||||++
T Consensus        75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~laral~  145 (232)
T PRK10771         75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP---------GQLSGGQRQRVALARCLV  145 (232)
T ss_pred             EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc---------ccCCHHHHHHHHHHHHHh
Confidence            9999998885 69999998753111     11233555666677766665555         579999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhcCH
Q 020527          234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKGR  311 (325)
Q Consensus       234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~~  311 (325)
                      .+|+++||||||++||+.+++.+.+.|+++.++  .|+|+|++|||++.+.. ||++++|++|++++.|+++++.+...
T Consensus       146 ~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~~~  222 (232)
T PRK10771        146 REQPILLLDEPFSALDPALRQEMLTLVSQVCQE--RQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGKA  222 (232)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhChh
Confidence            999999999999999999999999999998652  37899999999999865 99999999999999999999887653

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=100.00  E-value=4.5e-50  Score=366.57  Aligned_cols=214  Identities=27%  Similarity=0.428  Sum_probs=181.1

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      |+++|++++|+++   .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus         2 l~~~~l~~~~~~~---~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~   78 (256)
T TIGR03873         2 LRLSRVSWSAGGR---LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA   78 (256)
T ss_pred             ceEEeEEEEECCE---EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence            6899999999753   6999999999999999999999999999999999999999999999999987776666677899


Q ss_pred             EEccCCcCc-cccHHHHHhcCCCCC------C---CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 020527          160 FVGQEPQLL-QMDIKSNIMYGCPKD------V---KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA  229 (325)
Q Consensus       160 ~v~Q~~~l~-~~tv~enl~~~~~~~------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA  229 (325)
                      |+||++.++ ..||+||+.++....      .   ..+.+.++++.+++.+..++.         ...||||||||++||
T Consensus        79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~qrl~la  149 (256)
T TIGR03873        79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRD---------MSTLSGGERQRVHVA  149 (256)
T ss_pred             EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCC---------cccCCHHHHHHHHHH
Confidence            999998655 689999998752110      0   011233444444544433332         357999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhh
Q 020527          230 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLH  308 (325)
Q Consensus       230 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~  308 (325)
                      ||++.+|+++||||||++||+.++..+.+.|+++++   +|.|||++|||++.+. .||+|++|++|++++.|+++++..
T Consensus       150 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  226 (256)
T TIGR03873       150 RALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA---TGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT  226 (256)
T ss_pred             HHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence            999999999999999999999999999999999864   3789999999999995 599999999999999999988765

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=100.00  E-value=2.7e-50  Score=358.07  Aligned_cols=204  Identities=32%  Similarity=0.542  Sum_probs=170.8

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCH---HHHhc
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI---RWLRE  156 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~---~~~r~  156 (325)
                      ++++|++++|+++  +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.   ..+++
T Consensus         1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~   78 (214)
T cd03292           1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR   78 (214)
T ss_pred             CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence            4689999999642  359999999999999999999999999999999999999999999999999876543   23567


Q ss_pred             ceEEEccCCcCcc-ccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527          157 KIGFVGQEPQLLQ-MDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR  230 (325)
Q Consensus       157 ~i~~v~Q~~~l~~-~tv~enl~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr  230 (325)
                      .++|+||++.+|+ .|++||+.++... ...    .+.+.++++..++.+..++.+         .+||||||||++|||
T Consensus        79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~lar  149 (214)
T cd03292          79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP---------AELSGGEQQRVAIAR  149 (214)
T ss_pred             heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh---------hhcCHHHHHHHHHHH
Confidence            8999999998885 7999999864211 111    123344555555555444433         579999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEE
Q 020527          231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI  297 (325)
Q Consensus       231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i  297 (325)
                      ||+.+|+++||||||++||+.+++.+.+.|+++.+   +|+|+|++||+++.+.. ||++++|++|++
T Consensus       150 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~---~~~tiiivtH~~~~~~~~~d~i~~l~~G~~  214 (214)
T cd03292         150 AIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK---AGTTVVVATHAKELVDTTRHRVIALERGKL  214 (214)
T ss_pred             HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            99999999999999999999999999999999864   37899999999999875 999999999974

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.7e-50  Score=365.11  Aligned_cols=219  Identities=31%  Similarity=0.483  Sum_probs=177.7

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-----CCCeEEECCEeCC--CCCH
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLT--DLDI  151 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-----~~G~I~i~g~~i~--~~~~  151 (325)
                      .|+++||+++|+++   ++|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|+++.  ..+.
T Consensus         4 ~l~~~~l~~~~~~~---~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~   80 (253)
T PRK14267          4 AIETVNLRVYYGSN---HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP   80 (253)
T ss_pred             eEEEEeEEEEeCCe---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence            58999999999753   599999999999999999999999999999999999987     4999999999986  3344


Q ss_pred             HHHhcceEEEccCCcCcc-ccHHHHHhcCCC-CCC--CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHH
Q 020527          152 RWLREKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDV--KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK  223 (325)
Q Consensus       152 ~~~r~~i~~v~Q~~~l~~-~tv~enl~~~~~-~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~  223 (325)
                      ..++++++|+||++.+|+ .|+.||+.++.. ...  ..    +.+.++++..++.+.+..     .......+||||||
T Consensus        81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~~~~LS~G~~  155 (253)
T PRK14267         81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKD-----RLNDYPSNLSGGQR  155 (253)
T ss_pred             HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhh-----hhccChhhCCHHHH
Confidence            456788999999999885 699999986421 110  11    122333333333211100     01112357999999


Q ss_pred             HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcC
Q 020527          224 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN  302 (325)
Q Consensus       224 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~  302 (325)
                      ||++|||||+.+|+++||||||++||+.++..+.+.|+++.+    ++|+|++|||++.+.. ||++++|++|++++.|+
T Consensus       156 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~----~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~  231 (253)
T PRK14267        156 QRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK----EYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGP  231 (253)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh----CCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCC
Confidence            999999999999999999999999999999999999999853    5799999999999865 99999999999999999


Q ss_pred             hHHHhhc
Q 020527          303 HAELLHK  309 (325)
Q Consensus       303 ~~~l~~~  309 (325)
                      +++++..
T Consensus       232 ~~~~~~~  238 (253)
T PRK14267        232 TRKVFEN  238 (253)
T ss_pred             HHHHHhC
Confidence            9998754

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=100.00  E-value=1.2e-50  Score=360.27  Aligned_cols=200  Identities=29%  Similarity=0.554  Sum_probs=166.6

Q ss_pred             EEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 020527           81 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF  160 (325)
Q Consensus        81 ~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~  160 (325)
                      +++||+++|++   .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.     .++++++|
T Consensus         1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~   72 (213)
T cd03235           1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY   72 (213)
T ss_pred             CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence            36899999974   35999999999999999999999999999999999999999999999998763     35678999


Q ss_pred             EccCCcC---ccccHHHHHhcCCCCC------C---CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 020527          161 VGQEPQL---LQMDIKSNIMYGCPKD------V---KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI  228 (325)
Q Consensus       161 v~Q~~~l---~~~tv~enl~~~~~~~------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i  228 (325)
                      +||++.+   ++.|++||+.++....      .   ..+.+.++++..++.+..++.+         .+||||||||++|
T Consensus        73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~l  143 (213)
T cd03235          73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI---------GELSGGQQQRVLL  143 (213)
T ss_pred             eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc---------ccCCHHHHHHHHH
Confidence            9999876   4579999998753211      0   1123444555556655544433         5799999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEc
Q 020527          229 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG  301 (325)
Q Consensus       229 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g  301 (325)
                      ||||+.+|++|||||||++||+.++..+.+.|+++++   +|.|+|++|||++.+.. ||++++|++| +++.|
T Consensus       144 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g  213 (213)
T cd03235         144 ARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR---EGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG  213 (213)
T ss_pred             HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence            9999999999999999999999999999999999864   37899999999999865 9999999886 55543

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.2e-50  Score=381.70  Aligned_cols=213  Identities=29%  Similarity=0.490  Sum_probs=182.1

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCC----HHHHh
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRWLR  155 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~----~~~~r  155 (325)
                      |++ ||+++|++.    .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++....    ....+
T Consensus         2 l~~-~l~k~~~~~----~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   75 (352)
T PRK11144          2 LEL-NFKQQLGDL----CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK   75 (352)
T ss_pred             eEE-EEEEEeCCE----EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence            778 999999742    23 999999999999999999999999999999999999999999999875421    23456


Q ss_pred             cceEEEccCCcCcc-ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 020527          156 EKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR  234 (325)
Q Consensus       156 ~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~  234 (325)
                      ++++|+||++.+|+ .||+||+.++.. ....+++.+.++..++.+++++.+         .+|||||||||+|||||+.
T Consensus        76 ~~i~~v~q~~~l~~~~tv~enl~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGq~qRvalaraL~~  145 (352)
T PRK11144         76 RRIGYVFQDARLFPHYKVRGNLRYGMA-KSMVAQFDKIVALLGIEPLLDRYP---------GSLSGGEKQRVAIGRALLT  145 (352)
T ss_pred             CCEEEEcCCcccCCCCcHHHHHHhhhh-hhhHHHHHHHHHHcCCchhhhCCc---------ccCCHHHHHHHHHHHHHHc
Confidence            78999999999884 799999998642 222344556666666665555544         5799999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhcC
Q 020527          235 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG  310 (325)
Q Consensus       235 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~  310 (325)
                      +|++|||||||++||+.++..+.+.|+++.++  .|+|+|+||||++++.. ||++++|++|++++.|++++++++.
T Consensus       146 ~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~--~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p  220 (352)
T PRK11144        146 APELLLMDEPLASLDLPRKRELLPYLERLARE--INIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS  220 (352)
T ss_pred             CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence            99999999999999999999999999998753  47899999999998865 9999999999999999999998764

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.8e-50  Score=377.51  Aligned_cols=226  Identities=22%  Similarity=0.350  Sum_probs=181.5

Q ss_pred             cEEEEEEEEECCCC-CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC----CCCCeEEECCEeCCCCCHHH
Q 020527           79 HVQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE----PSDGQIYIDGFPLTDLDIRW  153 (325)
Q Consensus        79 ~i~~~~v~~~y~~~-~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~----~~~G~I~i~g~~i~~~~~~~  153 (325)
                      .|+++||+++|+.+ ....+++||||+|++||+++|+|+||||||||+++|+|+++    |++|+|+|+|+++...+...
T Consensus         3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~   82 (330)
T PRK15093          3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE   82 (330)
T ss_pred             eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence            58999999999532 12469999999999999999999999999999999999997    58999999999997766543


Q ss_pred             H----hcceEEEccCCcC--c-cccHHHHHhcCCC---CC----CC----HHHHHHHHHHcCHHH---HHHhCCCCcccc
Q 020527          154 L----REKIGFVGQEPQL--L-QMDIKSNIMYGCP---KD----VK----NEDIEWAAKQAYVHE---FILSLPCGYETL  212 (325)
Q Consensus       154 ~----r~~i~~v~Q~~~l--~-~~tv~enl~~~~~---~~----~~----~~~~~~~~~~~~~~~---~~~~~~~~~~~~  212 (325)
                      +    ++.|+||||++..  + ..||.+|+.+...   ..    ..    .+.+.+.++.+++.+   .+++.       
T Consensus        83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~-------  155 (330)
T PRK15093         83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSF-------  155 (330)
T ss_pred             HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCC-------
Confidence            3    3579999999863  3 4799999864210   00    00    122334444444431   22222       


Q ss_pred             cCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEE
Q 020527          213 VDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVV  291 (325)
Q Consensus       213 ~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~  291 (325)
                        +.+|||||||||+|||||+.+|++||+||||++||+.++.++.++|+++.++  .|.|+|+||||++.+.. ||||++
T Consensus       156 --p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~--~g~tii~itHdl~~v~~~~dri~v  231 (330)
T PRK15093        156 --PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQN--NNTTILLISHDLQMLSQWADKINV  231 (330)
T ss_pred             --chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh--cCCEEEEEECCHHHHHHhCCEEEE
Confidence              3679999999999999999999999999999999999999999999999753  48899999999999965 999999


Q ss_pred             EeCCEEEEEcChHHHhhc-CHHHHH
Q 020527          292 IDDGRIIEVGNHAELLHK-GRLYAK  315 (325)
Q Consensus       292 l~~G~i~~~g~~~~l~~~-~~~~~~  315 (325)
                      |++|+|++.|++++++.+ ...|.+
T Consensus       232 m~~G~ive~g~~~~i~~~p~~~y~~  256 (330)
T PRK15093        232 LYCGQTVETAPSKELVTTPHHPYTQ  256 (330)
T ss_pred             EECCEEEEECCHHHHHhCCCCHHHH
Confidence            999999999999998764 344544

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-49  Score=364.65  Aligned_cols=220  Identities=35%  Similarity=0.551  Sum_probs=179.1

Q ss_pred             ccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC-----CCCCeEEECCEeCCC--CC
Q 020527           78 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LD  150 (325)
Q Consensus        78 ~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~-----~~~G~I~i~g~~i~~--~~  150 (325)
                      ..|+++|++++|++.   ++|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|+++..  .+
T Consensus        12 ~~l~~~~l~~~~~~~---~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~   88 (260)
T PRK10744         12 SKIQVRNLNFYYGKF---HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD   88 (260)
T ss_pred             ceEEEEEEEEEeCCe---EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence            359999999999743   59999999999999999999999999999999999986     589999999998853  33


Q ss_pred             HHHHhcceEEEccCCcCccccHHHHHhcCCCC--CCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHH
Q 020527          151 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK--DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ  224 (325)
Q Consensus       151 ~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~Q  224 (325)
                      ...++++|+|+||++.+|+.|++||+.++...  ....    +++.++++..++.+.+..     .......+|||||||
T Consensus        89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~~~~LS~Gq~q  163 (260)
T PRK10744         89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKD-----KLHQSGYSLSGGQQQ  163 (260)
T ss_pred             hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH-----HHhcCCCCCCHHHHH
Confidence            45667889999999988889999999875211  1111    223334444443211100     001123579999999


Q ss_pred             HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcCh
Q 020527          225 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNH  303 (325)
Q Consensus       225 Rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~  303 (325)
                      |++|||||+.+|++|||||||++||+.+++.+.+.|+++++    +.|||++||+++.+. .||++++|++|++++.|++
T Consensus       164 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~----~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~  239 (260)
T PRK10744        164 RLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ----DYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNT  239 (260)
T ss_pred             HHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc----CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence            99999999999999999999999999999999999999852    579999999999986 4999999999999999999


Q ss_pred             HHHhhc
Q 020527          304 AELLHK  309 (325)
Q Consensus       304 ~~l~~~  309 (325)
                      +++++.
T Consensus       240 ~~~~~~  245 (260)
T PRK10744        240 DTIFTK  245 (260)
T ss_pred             HHHHhC
Confidence            998764

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=100.00  E-value=7.6e-50  Score=358.32  Aligned_cols=215  Identities=49%  Similarity=0.802  Sum_probs=181.2

Q ss_pred             ccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 020527           78 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK  157 (325)
Q Consensus        78 ~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~  157 (325)
                      +.++++|++++|+++...++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.
T Consensus        10 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~   89 (226)
T cd03248          10 GIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSK   89 (226)
T ss_pred             ceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhh
Confidence            35999999999975322369999999999999999999999999999999999999999999999998866555566788


Q ss_pred             eEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCC
Q 020527          158 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRD  235 (325)
Q Consensus       158 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~  235 (325)
                      ++|+||++.+|+.|++||+.++... ..........+...+.++++.++.++.+...  ..+||||||||++|||||+.+
T Consensus        90 i~~~~q~~~l~~~tv~~nl~~~~~~-~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~  168 (226)
T cd03248          90 VSLVGQEPVLFARSLQDNIAYGLQS-CSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRN  168 (226)
T ss_pred             EEEEecccHHHhhhHHHHhccccCC-CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence            9999999988888999999876322 2223333344455677788877555544332  468999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEE
Q 020527          236 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI  297 (325)
Q Consensus       236 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i  297 (325)
                      |+++||||||++||+.++..+.+.++++.+    ++|+|++|||++.+..||++++|++|++
T Consensus       169 p~llllDEPt~~LD~~~~~~l~~~l~~~~~----~~tii~~sh~~~~~~~~d~i~~l~~g~i  226 (226)
T cd03248         169 PQVLILDEATSALDAESEQQVQQALYDWPE----RRTVLVIAHRLSTVERADQILVLDGGRI  226 (226)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHHcC----CCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence            999999999999999999999999999853    4799999999999877999999999974

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=100.00  E-value=7.1e-50  Score=365.47  Aligned_cols=217  Identities=30%  Similarity=0.450  Sum_probs=178.9

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCC---------
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL---------  149 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~---------  149 (325)
                      .|+++||++.|++   +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...         
T Consensus         5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (257)
T PRK10619          5 KLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKV   81 (257)
T ss_pred             cEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccc
Confidence            4899999999974   3599999999999999999999999999999999999999999999999987531         


Q ss_pred             ----CHHHHhcceEEEccCCcCcc-ccHHHHHhcCCC--CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCC
Q 020527          150 ----DIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCP--KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLL  218 (325)
Q Consensus       150 ----~~~~~r~~i~~v~Q~~~l~~-~tv~enl~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  218 (325)
                          ....++++++|+||++.+++ .|++||+.++..  .....    +++.++++..++.+..        ......+|
T Consensus        82 ~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--------~~~~~~~L  153 (257)
T PRK10619         82 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA--------QGKYPVHL  153 (257)
T ss_pred             ccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh--------hhCCcccC
Confidence                12345778999999999885 799999976311  01111    1223333443333322        11223679


Q ss_pred             ChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEE
Q 020527          219 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI  297 (325)
Q Consensus       219 SgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i  297 (325)
                      |||||||++|||||+.+|++|||||||++||+.+++.+.+.|+++++   +|+|||++|||++.+.. |||+++|++|++
T Consensus       154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~---~g~tiiivsH~~~~~~~~~d~i~~l~~G~i  230 (257)
T PRK10619        154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE---EGKTMVVVTHEMGFARHVSSHVIFLHQGKI  230 (257)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence            99999999999999999999999999999999999999999999864   37899999999999875 999999999999


Q ss_pred             EEEcChHHHhhc
Q 020527          298 IEVGNHAELLHK  309 (325)
Q Consensus       298 ~~~g~~~~l~~~  309 (325)
                      ++.|++++++..
T Consensus       231 ~~~~~~~~~~~~  242 (257)
T PRK10619        231 EEEGAPEQLFGN  242 (257)
T ss_pred             EEeCCHHHhhhC
Confidence            999999988754

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=100.00  E-value=8.4e-50  Score=354.45  Aligned_cols=204  Identities=34%  Similarity=0.539  Sum_probs=172.0

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      |+++|++++|+++   .  .|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.  .++.++
T Consensus         1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~   73 (211)
T cd03298           1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS   73 (211)
T ss_pred             CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence            4789999999642   2  39999999999999999999999999999999999999999999999875543  357899


Q ss_pred             EEccCCcCcc-ccHHHHHhcCCCCC-----CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 020527          160 FVGQEPQLLQ-MDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL  233 (325)
Q Consensus       160 ~v~Q~~~l~~-~tv~enl~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~  233 (325)
                      |+||++.+|+ .|++||+.++....     ..++.+.++++..++.+..++.+         .+||||||||++|||||+
T Consensus        74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~ia~al~  144 (211)
T cd03298          74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP---------GELSGGERQRVALARVLV  144 (211)
T ss_pred             EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc---------ccCCHHHHHHHHHHHHHh
Confidence            9999999885 69999998753211     11233455666666665555544         579999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEc
Q 020527          234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG  301 (325)
Q Consensus       234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g  301 (325)
                      .+|+++||||||++||+.++..+.+.|++++++  .++|+|++|||++.+.. ||++++|++|++++.|
T Consensus       145 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~  211 (211)
T cd03298         145 RDKPVLLLDEPFAALDPALRAEMLDLVLDLHAE--TKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG  211 (211)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence            999999999999999999999999999998652  47899999999999865 9999999999998653

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.3e-50  Score=345.62  Aligned_cols=218  Identities=27%  Similarity=0.426  Sum_probs=190.4

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      +|+.+|++++..++   .+|+++||++++||+++|+||||||||||||.|+|.+.|++|++.++|.+++++++.++.++-
T Consensus         1 mi~a~nls~~~~Gr---~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~r   77 (259)
T COG4559           1 MIRAENLSYSLAGR---RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHR   77 (259)
T ss_pred             CeeeeeeEEEeecc---eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHh
Confidence            37899999998764   699999999999999999999999999999999999999999999999999999999998999


Q ss_pred             EEEccCCcC-ccccHHHHHhcCCCCCC---C--HHH--HHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527          159 GFVGQEPQL-LQMDIKSNIMYGCPKDV---K--NED--IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR  230 (325)
Q Consensus       159 ~~v~Q~~~l-~~~tv~enl~~~~~~~~---~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr  230 (325)
                      +.+||+..+ |+.||+|.+.+|..+..   .  ++.  ..+++.++++..+..+.-         ..|||||||||.+||
T Consensus        78 aVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y---------~~LSGGEqQRVqlAR  148 (259)
T COG4559          78 AVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDY---------RTLSGGEQQRVQLAR  148 (259)
T ss_pred             hhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccch---------hhcCchHHHHHHHHH
Confidence            999999988 89999999999864321   1  112  455666666666554432         469999999999999


Q ss_pred             HHcC------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcCh
Q 020527          231 AILR------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNH  303 (325)
Q Consensus       231 al~~------~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~  303 (325)
                      .|++      ++++|+||||||+||+..+..++++.+++.++   |..|+.|-||++.+. +||||++|.+|++++.|+|
T Consensus       149 vLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~---g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p  225 (259)
T COG4559         149 VLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE---GGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSP  225 (259)
T ss_pred             HHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc---CCcEEEEEccchHHHHhhheeeeeeCCeEeecCCH
Confidence            9975      45699999999999999999999999999864   689999999999985 5999999999999999999


Q ss_pred             HHHhhcCH
Q 020527          304 AELLHKGR  311 (325)
Q Consensus       304 ~~l~~~~~  311 (325)
                      +++++.+.
T Consensus       226 ~~vlt~Et  233 (259)
T COG4559         226 QDVLTDET  233 (259)
T ss_pred             HHhcCHHH
Confidence            99998653

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=100.00  E-value=4.7e-50  Score=355.80  Aligned_cols=203  Identities=27%  Similarity=0.523  Sum_probs=168.6

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      ++++|++++|++   +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..    ..+++++
T Consensus         1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~   73 (210)
T cd03269           1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG   73 (210)
T ss_pred             CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence            478999999974   359999999999999999999999999999999999999999999999987642    3567899


Q ss_pred             EEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 020527          160 FVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL  233 (325)
Q Consensus       160 ~v~Q~~~l~~-~tv~enl~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~  233 (325)
                      |+||++.+++ .|++||+.+... ....    .+.+.+.++..++.+..++.         ..+||||||||++|||||+
T Consensus        74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~qrl~la~al~  144 (210)
T cd03269          74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKR---------VEELSKGNQQKVQFIAAVI  144 (210)
T ss_pred             EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCc---------HhhCCHHHHHHHHHHHHHh
Confidence            9999998885 799999976421 0111    12233344444444433332         2579999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEc
Q 020527          234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG  301 (325)
Q Consensus       234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g  301 (325)
                      .+|+++||||||++||+.++..+.+.++++++   +++|||++|||++.+.. ||++++|++|++++.|
T Consensus       145 ~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~---~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~  210 (210)
T cd03269         145 HDPELLILDEPFSGLDPVNVELLKDVIRELAR---AGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG  210 (210)
T ss_pred             cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence            99999999999999999999999999999864   37899999999998865 9999999999998753

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=100.00  E-value=1.2e-49  Score=357.20  Aligned_cols=211  Identities=34%  Similarity=0.492  Sum_probs=169.4

Q ss_pred             EEEEEEEEECCCCC-CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCH---HHHh
Q 020527           80 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI---RWLR  155 (325)
Q Consensus        80 i~~~~v~~~y~~~~-~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~---~~~r  155 (325)
                      |+++||+++|+++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.   ..++
T Consensus         2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (228)
T cd03257           2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR   81 (228)
T ss_pred             eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence            78999999996431 1259999999999999999999999999999999999999999999999999876553   4567


Q ss_pred             cceEEEccCCc--Cc-cccHHHHHhcCCCC--CCCH-HHH----HHHHHHcCHH-HHHHhCCCCcccccCCCCCChHHHH
Q 020527          156 EKIGFVGQEPQ--LL-QMDIKSNIMYGCPK--DVKN-EDI----EWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQ  224 (325)
Q Consensus       156 ~~i~~v~Q~~~--l~-~~tv~enl~~~~~~--~~~~-~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~LSgGq~Q  224 (325)
                      +.++|+||++.  ++ ..|++||+.++...  .... +..    .+.++..++. ...+         ....+|||||||
T Consensus        82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~~LS~G~~q  152 (228)
T cd03257          82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLN---------RYPHELSGGQRQ  152 (228)
T ss_pred             ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhh---------CCchhcCHHHHH
Confidence            88999999983  44 58999999754211  0111 111    1222333331 1222         223679999999


Q ss_pred             HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEc
Q 020527          225 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVG  301 (325)
Q Consensus       225 Rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g  301 (325)
                      |++|||||+.+|++|||||||++||+.+++.+.+.|++++++  .|+|||++|||++.+. .||++++|++|++++.|
T Consensus       153 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g  228 (228)
T cd03257         153 RVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEE--LGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG  228 (228)
T ss_pred             HHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence            999999999999999999999999999999999999998652  3789999999999987 59999999999998654

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.3e-49  Score=365.75  Aligned_cols=220  Identities=31%  Similarity=0.481  Sum_probs=179.6

Q ss_pred             ccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-----CCCeEEECCEeCCC--CC
Q 020527           78 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--LD  150 (325)
Q Consensus        78 ~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-----~~G~I~i~g~~i~~--~~  150 (325)
                      ..|+++||+++|++   ..+|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|+++|+++..  .+
T Consensus        18 ~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~   94 (267)
T PRK14235         18 IKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD   94 (267)
T ss_pred             ceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc
Confidence            36999999999974   3599999999999999999999999999999999999975     89999999999864  23


Q ss_pred             HHHHhcceEEEccCCcCccccHHHHHhcCCC-CCC--C----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHH
Q 020527          151 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDV--K----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK  223 (325)
Q Consensus       151 ~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~-~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~  223 (325)
                      ...+++.++|+||++.+|+.|+.||+.++.. ...  .    .+.+.++++..++.+.+..     .......+||||||
T Consensus        95 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~~~~LSgGq~  169 (267)
T PRK14235         95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKD-----RLHEPGTGLSGGQQ  169 (267)
T ss_pred             hHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhH-----HhhCCcccCCHHHH
Confidence            4456788999999999887799999987521 010  1    1223334444444321110     00112357999999


Q ss_pred             HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcC
Q 020527          224 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN  302 (325)
Q Consensus       224 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~  302 (325)
                      ||++|||||+.+|++|||||||++||+.++..+.+.|+++.+    +.|||++|||++.+.. ||++++|++|++++.|+
T Consensus       170 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~----~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~  245 (267)
T PRK14235        170 QRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ----NYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGD  245 (267)
T ss_pred             HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc----CCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCC
Confidence            999999999999999999999999999999999999999853    5799999999999865 99999999999999999


Q ss_pred             hHHHhhc
Q 020527          303 HAELLHK  309 (325)
Q Consensus       303 ~~~l~~~  309 (325)
                      +++++.+
T Consensus       246 ~~~~~~~  252 (267)
T PRK14235        246 TEKMFTN  252 (267)
T ss_pred             HHHHHhC
Confidence            9998754

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=100.00  E-value=3.5e-49  Score=403.55  Aligned_cols=262  Identities=24%  Similarity=0.353  Sum_probs=216.9

Q ss_pred             CCcCHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcc-------ccc---c--------
Q 020527           13 GQVSPEQLTK-YVLY---CEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQF-------LSE---G--------   70 (325)
Q Consensus        13 g~it~g~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-------~~~---~--------   70 (325)
                      |.+|+|.+++ |..+   +..+..|+..+...+.+++++.++.+|+.++++.+++...       .+.   .        
T Consensus       358 g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (659)
T TIGR00954       358 LEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSN  437 (659)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccccc
Confidence            7899998766 5554   5666899999999999999999999999999976432110       000   0        


Q ss_pred             -----ccccCCcccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEe
Q 020527           71 -----VKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP  145 (325)
Q Consensus        71 -----~~~~~~~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~  145 (325)
                           .......+.|+++||+++|+++  .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++  
T Consensus       438 ~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~--  513 (659)
T TIGR00954       438 LVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA--  513 (659)
T ss_pred             ccccccccccCCCeEEEEeeEEECCCC--CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC--
Confidence                 0001122359999999999643  3699999999999999999999999999999999999999999998763  


Q ss_pred             CCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCC------CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC-CCCC
Q 020527          146 LTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP------KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD-DDLL  218 (325)
Q Consensus       146 i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L  218 (325)
                               +++++|+||+|.+|+.|++||+.++..      ....++++.++++.+++.+++++ +.|+++..+ ..+|
T Consensus       514 ---------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~~~~~L  583 (659)
T TIGR00954       514 ---------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQDWMDVL  583 (659)
T ss_pred             ---------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccccccCC
Confidence                     467999999999998899999998631      12345677888999999988877 667777655 3689


Q ss_pred             ChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeC
Q 020527          219 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD  294 (325)
Q Consensus       219 SgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~  294 (325)
                      |||||||++|||||+++|+++||||||++||+.+++.+.+.+++.      |+|+|+|||+++.+..||++++|+.
T Consensus       584 SgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~------~~tvI~isH~~~~~~~~d~il~l~~  653 (659)
T TIGR00954       584 SGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF------GITLFSVSHRKSLWKYHEYLLYMDG  653 (659)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc------CCEEEEEeCchHHHHhCCEEEEEeC
Confidence            999999999999999999999999999999999999998888653      6799999999999888999999973

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-49  Score=364.38  Aligned_cols=220  Identities=30%  Similarity=0.474  Sum_probs=177.4

Q ss_pred             ccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-----CCCeEEECCEeCCCCC--
Q 020527           78 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDLD--  150 (325)
Q Consensus        78 ~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-----~~G~I~i~g~~i~~~~--  150 (325)
                      ..|+++|++++|++   ..+|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++....  
T Consensus        11 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~   87 (258)
T PRK14268         11 PQIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD   87 (258)
T ss_pred             eeEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence            35999999999974   3599999999999999999999999999999999999985     7999999999875432  


Q ss_pred             HHHHhcceEEEccCCcCccccHHHHHhcCCC-CCCCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527          151 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR  225 (325)
Q Consensus       151 ~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR  225 (325)
                      ...+++.++|+||++.+|+.|++||+.++.. .....+    .+.++++.+++.+.+.     .........||||||||
T Consensus        88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~LSgG~~qr  162 (258)
T PRK14268         88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS-----DRLKSPALSLSGGQQQR  162 (258)
T ss_pred             HHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh-----hhhcCChhhCCHHHHHH
Confidence            3345778999999998888999999987421 111111    1223333333211100     00111235799999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChH
Q 020527          226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA  304 (325)
Q Consensus       226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~  304 (325)
                      ++|||||+.+|++|||||||++||+.++..+.+.|+++.+    ++|||++|||++.+.. |||+++|++|++++.|+++
T Consensus       163 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~----~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~  238 (258)
T PRK14268        163 LCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK----DYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTR  238 (258)
T ss_pred             HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh----CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence            9999999999999999999999999999999999999842    6899999999999864 9999999999999999999


Q ss_pred             HHhhc
Q 020527          305 ELLHK  309 (325)
Q Consensus       305 ~l~~~  309 (325)
                      +++.+
T Consensus       239 ~~~~~  243 (258)
T PRK14268        239 QIFHN  243 (258)
T ss_pred             HHhcC
Confidence            98754

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=100.00  E-value=2.3e-49  Score=364.06  Aligned_cols=230  Identities=26%  Similarity=0.444  Sum_probs=184.1

Q ss_pred             cEEEEEEEEECCCC------CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHH
Q 020527           79 HVQFVNISFHYPSR------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR  152 (325)
Q Consensus        79 ~i~~~~v~~~y~~~------~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~  152 (325)
                      +|+++||+++|+.+      ...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++......
T Consensus         4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~   83 (267)
T PRK15112          4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS   83 (267)
T ss_pred             eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence            48999999999631      123699999999999999999999999999999999999999999999999998654444


Q ss_pred             HHhcceEEEccCCc--Cc-cccHHHHHhcCCCC--CCC----HHHHHHHHHHcCH-HHHHHhCCCCcccccCCCCCChHH
Q 020527          153 WLREKIGFVGQEPQ--LL-QMDIKSNIMYGCPK--DVK----NEDIEWAAKQAYV-HEFILSLPCGYETLVDDDLLSGGQ  222 (325)
Q Consensus       153 ~~r~~i~~v~Q~~~--l~-~~tv~enl~~~~~~--~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~LSgGq  222 (325)
                      ..++.++|+||++.  ++ ..|+.+|+.++...  ...    .+.+.++++.+++ ....+..         ..+|||||
T Consensus        84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~~LS~G~  154 (267)
T PRK15112         84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYY---------PHMLAPGQ  154 (267)
T ss_pred             hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcC---------chhcCHHH
Confidence            45568999999985  34 36899998653110  111    1223344444444 2222222         25799999


Q ss_pred             HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEc
Q 020527          223 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG  301 (325)
Q Consensus       223 ~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g  301 (325)
                      |||++|||||+.+|++|||||||++||+.+++.+.+.|.++.++  .|.|||++||+++.+.. ||++++|++|++++.|
T Consensus       155 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~  232 (267)
T PRK15112        155 KQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEK--QGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG  232 (267)
T ss_pred             HHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH--cCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence            99999999999999999999999999999999999999998653  37899999999999875 9999999999999999


Q ss_pred             ChHHHhhcC--HHHHHHHHH
Q 020527          302 NHAELLHKG--RLYAKLVKR  319 (325)
Q Consensus       302 ~~~~l~~~~--~~~~~~~~~  319 (325)
                      +++++.+..  ..+..++..
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~  252 (267)
T PRK15112        233 STADVLASPLHELTKRLIAG  252 (267)
T ss_pred             CHHHHhcCCCCHHHHHHHHh
Confidence            999987652  445566654

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=100.00  E-value=6.2e-50  Score=355.54  Aligned_cols=203  Identities=37%  Similarity=0.537  Sum_probs=169.2

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCC--CCHHHHhcc
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD--LDIRWLREK  157 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~--~~~~~~r~~  157 (325)
                      ++++|++++|+++   ++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..  .....+++.
T Consensus         1 l~~~~l~~~~~~~---~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~   77 (213)
T cd03262           1 IEIKNLHKSFGDF---HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK   77 (213)
T ss_pred             CEEEEEEEEECCe---EeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence            4789999999753   59999999999999999999999999999999999999999999999998843  233456788


Q ss_pred             eEEEccCCcCcc-ccHHHHHhcCCC--CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527          158 IGFVGQEPQLLQ-MDIKSNIMYGCP--KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR  230 (325)
Q Consensus       158 i~~v~Q~~~l~~-~tv~enl~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr  230 (325)
                      ++|+||++.+|+ .|++||+.++..  .....    +.+.++++..++.+.+++.+         .+||||||||++|||
T Consensus        78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~  148 (213)
T cd03262          78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYP---------AQLSGGQQQRVAIAR  148 (213)
T ss_pred             ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCc---------cccCHHHHHHHHHHH
Confidence            999999998885 799999976421  11111    12333444455544444433         579999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEE
Q 020527          231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI  297 (325)
Q Consensus       231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i  297 (325)
                      ||+.+|++|||||||++||+.+++.+.+.|+++++   .|+|+|++||+++.+.. ||++++|++|++
T Consensus       149 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i  213 (213)
T cd03262         149 ALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE---EGMTMVVVTHEMGFAREVADRVIFMDDGRI  213 (213)
T ss_pred             HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            99999999999999999999999999999999974   37899999999999865 999999999974

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=100.00  E-value=2.2e-49  Score=363.19  Aligned_cols=224  Identities=27%  Similarity=0.404  Sum_probs=182.0

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCC---CCeEEECCEeCCCC-----C
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDL-----D  150 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~---~G~I~i~g~~i~~~-----~  150 (325)
                      .|+++||+++|++   .++|+|+||+|++||+++|+||||||||||+++|+|+++|+   +|+|.++|.++...     .
T Consensus         4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~   80 (262)
T PRK09984          4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD   80 (262)
T ss_pred             EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence            4899999999974   36999999999999999999999999999999999999986   49999999987543     2


Q ss_pred             HHHHhcceEEEccCCcCcc-ccHHHHHhcCCCCC-------------CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCC
Q 020527          151 IRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKD-------------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD  216 (325)
Q Consensus       151 ~~~~r~~i~~v~Q~~~l~~-~tv~enl~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (325)
                      ...++++++|+||++.+|+ .|++||+.++....             .....+.++++..++.+..++.         ..
T Consensus        81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~  151 (262)
T PRK09984         81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQR---------VS  151 (262)
T ss_pred             HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCC---------cc
Confidence            2445678999999998885 79999998753110             0012234444445554443332         25


Q ss_pred             CCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCC
Q 020527          217 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDG  295 (325)
Q Consensus       217 ~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G  295 (325)
                      +||||||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.++  .|+|||++|||++.+. .||++++|++|
T Consensus       152 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~g~tvii~tH~~~~~~~~~d~i~~l~~g  229 (262)
T PRK09984        152 TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQN--DGITVVVTLHQVDYALRYCERIVALRQG  229 (262)
T ss_pred             ccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence            79999999999999999999999999999999999999999999999653  3789999999999875 59999999999


Q ss_pred             EEEEEcChHHHhhcCHHHHHHHH
Q 020527          296 RIIEVGNHAELLHKGRLYAKLVK  318 (325)
Q Consensus       296 ~i~~~g~~~~l~~~~~~~~~~~~  318 (325)
                      ++++.|+++++ +. ....++|.
T Consensus       230 ~i~~~g~~~~~-~~-~~~~~~~~  250 (262)
T PRK09984        230 HVFYDGSSQQF-DN-ERFDHLYR  250 (262)
T ss_pred             EEEEeCCHHHh-cc-HHHHHHHh
Confidence            99999999886 32 23444443

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=100.00  E-value=2.1e-49  Score=374.24  Aligned_cols=229  Identities=26%  Similarity=0.408  Sum_probs=181.3

Q ss_pred             cEEEEEEEEECCCC-CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCC---CCeEEECCEeCCCCCHHHH
Q 020527           79 HVQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLDIRWL  154 (325)
Q Consensus        79 ~i~~~~v~~~y~~~-~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~---~G~I~i~g~~i~~~~~~~~  154 (325)
                      .|+++|+++.|+.. ....+++||||+|++||+++|+|+||||||||+++|+|+++|+   +|+|.|+|+++..++..++
T Consensus        12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~   91 (330)
T PRK09473         12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL   91 (330)
T ss_pred             eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence            59999999999632 1246999999999999999999999999999999999999996   9999999999987765543


Q ss_pred             ---h-cceEEEccCC--cCc-cccHHHHHhcCCC--CCCCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChH
Q 020527          155 ---R-EKIGFVGQEP--QLL-QMDIKSNIMYGCP--KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGG  221 (325)
Q Consensus       155 ---r-~~i~~v~Q~~--~l~-~~tv~enl~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgG  221 (325)
                         | +.|+||||++  .++ ..|+.+|+.....  ......    .+.+.++.+++.+...      .....+.+||||
T Consensus        92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~------~~~~~p~~LSgG  165 (330)
T PRK09473         92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARK------RMKMYPHEFSGG  165 (330)
T ss_pred             HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHH------HhcCCcccCCHH
Confidence               3 4799999998  455 4788888754211  111111    2223333333321000      001224689999


Q ss_pred             HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEE
Q 020527          222 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEV  300 (325)
Q Consensus       222 q~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~  300 (325)
                      |+|||+|||||+.+|++||+||||++||+.++..++++|++++++  .|.|+|+||||++.+.. ||||++|++|+|++.
T Consensus       166 ~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~--~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~  243 (330)
T PRK09473        166 MRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKRE--FNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY  243 (330)
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH--cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence            999999999999999999999999999999999999999999763  48899999999999865 999999999999999


Q ss_pred             cChHHHhhc-CHHHHH
Q 020527          301 GNHAELLHK-GRLYAK  315 (325)
Q Consensus       301 g~~~~l~~~-~~~~~~  315 (325)
                      |++++++++ ...|.+
T Consensus       244 g~~~~i~~~p~~pyt~  259 (330)
T PRK09473        244 GNARDVFYQPSHPYSI  259 (330)
T ss_pred             CCHHHHHhCCCCHHHH
Confidence            999999864 334544

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.4e-49  Score=380.21  Aligned_cols=212  Identities=28%  Similarity=0.419  Sum_probs=175.1

Q ss_pred             EEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCE----eCCCCCHHH---Hh-
Q 020527           84 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF----PLTDLDIRW---LR-  155 (325)
Q Consensus        84 ~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~----~i~~~~~~~---~r-  155 (325)
                      ++.++|+.   ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+    ++...+...   .| 
T Consensus        29 ~~~~~~g~---~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~  105 (382)
T TIGR03415        29 EILDETGL---VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRT  105 (382)
T ss_pred             HHHHhhCC---EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhc
Confidence            34455643   36899999999999999999999999999999999999999999999997    454444333   23 


Q ss_pred             cceEEEccCCcCcc-ccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 020527          156 EKIGFVGQEPQLLQ-MDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA  229 (325)
Q Consensus       156 ~~i~~v~Q~~~l~~-~tv~enl~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA  229 (325)
                      ++++|+||++.+|+ .||+||+.++... ...    .+...++++.+++.++.++.+         .+|||||||||+||
T Consensus       106 ~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~---------~~LSgGq~QRV~LA  176 (382)
T TIGR03415       106 HRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP---------GELSGGMQQRVGLA  176 (382)
T ss_pred             CCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHHH
Confidence            57999999999985 8999999876311 111    123344555555555444433         57999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhh
Q 020527          230 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLH  308 (325)
Q Consensus       230 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~  308 (325)
                      |||+.+|+||||||||++||+.++..+.+.|.+++++  .++|+|+||||++++. .||||++|++|++++.|++++++.
T Consensus       177 RALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~--~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~  254 (382)
T TIGR03415       177 RAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAK--LNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVL  254 (382)
T ss_pred             HHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence            9999999999999999999999999999999999753  4789999999999985 599999999999999999999976


Q ss_pred             c
Q 020527          309 K  309 (325)
Q Consensus       309 ~  309 (325)
                      .
T Consensus       255 ~  255 (382)
T TIGR03415       255 N  255 (382)
T ss_pred             C
Confidence            4

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=100.00  E-value=1.1e-49  Score=357.28  Aligned_cols=212  Identities=25%  Similarity=0.424  Sum_probs=174.9

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .|+++||+++|+++   ++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus         7 ~i~~~~l~~~~~~~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i   83 (225)
T PRK10247          7 LLQLQNVGYLAGDA---KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV   83 (225)
T ss_pred             eEEEeccEEeeCCc---eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence            48999999999743   599999999999999999999999999999999999999999999999998776666677889


Q ss_pred             EEEccCCcCccccHHHHHhcCCC--CC-CCHHHHHHHHHHcCHH-HHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 020527          159 GFVGQEPQLLQMDIKSNIMYGCP--KD-VKNEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR  234 (325)
Q Consensus       159 ~~v~Q~~~l~~~tv~enl~~~~~--~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~  234 (325)
                      +|+||++.+|+.|++||+.++..  .. ...+.+.+.++..++. ...+         ....+|||||+||++|||||+.
T Consensus        84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~~LS~G~~qrv~laral~~  154 (225)
T PRK10247         84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILT---------KNIAELSGGEKQRISLIRNLQF  154 (225)
T ss_pred             EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhc---------CCcccCCHHHHHHHHHHHHHhc
Confidence            99999999888899999976421  11 1122233344444442 1222         2236799999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEe-CCEEEEEcChH
Q 020527          235 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVID-DGRIIEVGNHA  304 (325)
Q Consensus       235 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~-~G~i~~~g~~~  304 (325)
                      +|+++||||||++||+.++..+.+.|.++.++  .|.|||++||+++.+..||++++|+ ++..+++|+++
T Consensus       155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~  223 (225)
T PRK10247        155 MPKVLLLDEITSALDESNKHNVNEIIHRYVRE--QNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE  223 (225)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence            99999999999999999999999999998653  3789999999999987799999995 55566667654

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.8e-49  Score=359.11  Aligned_cols=221  Identities=32%  Similarity=0.549  Sum_probs=178.3

Q ss_pred             cccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-----CCCeEEECCEeCCC--C
Q 020527           77 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--L  149 (325)
Q Consensus        77 ~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-----~~G~I~i~g~~i~~--~  149 (325)
                      |+.|+++||++.|+++   ++++|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|+++..  .
T Consensus         1 ~~~l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~   77 (250)
T PRK14240          1 MGKISVKDLDLFYGDF---QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDI   77 (250)
T ss_pred             CCeEEEEEEEEEECCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence            4569999999999753   599999999999999999999999999999999999863     69999999998864  2


Q ss_pred             CHHHHhcceEEEccCCcCccccHHHHHhcCCC-CCC-C----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHH
Q 020527          150 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDV-K----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK  223 (325)
Q Consensus       150 ~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~-~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~  223 (325)
                      +...+|+.++|+||++.+|+.|++||+.++.. ... .    .+.+.++++..++.+.+..     .......+||||||
T Consensus        78 ~~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-----~~~~~~~~LS~G~~  152 (250)
T PRK14240         78 DVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKD-----RLKKSALGLSGGQQ  152 (250)
T ss_pred             chHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHH-----HHhcCCCCCCHHHH
Confidence            34456788999999998888999999987521 111 1    1222333333333211110     00112357999999


Q ss_pred             HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcC
Q 020527          224 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN  302 (325)
Q Consensus       224 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~  302 (325)
                      ||++|||||+.+|++|||||||++||+.++..+.+.|+++.    +++|||++||+++.+.. ||++++|++|++++.|+
T Consensus       153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~  228 (250)
T PRK14240        153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK----KDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGD  228 (250)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCC
Confidence            99999999999999999999999999999999999999984    26799999999998865 99999999999999999


Q ss_pred             hHHHhhc
Q 020527          303 HAELLHK  309 (325)
Q Consensus       303 ~~~l~~~  309 (325)
                      +++++..
T Consensus       229 ~~~~~~~  235 (250)
T PRK14240        229 TVDLFTN  235 (250)
T ss_pred             HHHHHhC
Confidence            9988754

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=100.00  E-value=4.1e-49  Score=349.11  Aligned_cols=202  Identities=33%  Similarity=0.544  Sum_probs=172.7

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .++++|++++|+.. ...+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.|
T Consensus         6 ~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i   84 (207)
T cd03369           6 EIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSL   84 (207)
T ss_pred             eEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence            58999999999742 13699999999999999999999999999999999999999999999999998766666678899


Q ss_pred             EEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCE
Q 020527          159 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI  238 (325)
Q Consensus       159 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~l  238 (325)
                      +|+||++.+|+.|++||+.+..  ....+.+.+.++       ++         .....|||||+||++||||++.+|++
T Consensus        85 ~~v~q~~~~~~~tv~~~l~~~~--~~~~~~~~~~l~-------~~---------~~~~~LS~G~~qrv~laral~~~p~l  146 (207)
T cd03369          85 TIIPQDPTLFSGTIRSNLDPFD--EYSDEEIYGALR-------VS---------EGGLNLSQGQRQLLCLARALLKRPRV  146 (207)
T ss_pred             EEEecCCcccCccHHHHhcccC--CCCHHHHHHHhh-------cc---------CCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence            9999999988889999997642  122222222221       11         12357999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcCh
Q 020527          239 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNH  303 (325)
Q Consensus       239 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~  303 (325)
                      +||||||++||+.++..+.+.|+++.    +|+|+|++||+++.+..||++++|++|++++.|++
T Consensus       147 lllDEP~~~LD~~~~~~l~~~l~~~~----~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~  207 (207)
T cd03369         147 LVLDEATASIDYATDALIQKTIREEF----TNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP  207 (207)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHhc----CCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence            99999999999999999999999873    37899999999999877999999999999987764

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.1e-49  Score=351.46  Aligned_cols=205  Identities=32%  Similarity=0.526  Sum_probs=174.1

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      ++++||+++|+.     .++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+  .+++.++
T Consensus         1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~   73 (213)
T TIGR01277         1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS   73 (213)
T ss_pred             CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence            468999999962     568999999999999999999999999999999999999999999999886533  3567899


Q ss_pred             EEccCCcCcc-ccHHHHHhcCCCCC-----CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 020527          160 FVGQEPQLLQ-MDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL  233 (325)
Q Consensus       160 ~v~Q~~~l~~-~tv~enl~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~  233 (325)
                      |+||++.+|. .|++||+.++....     .....+.++++..++.+..++.+         .+||||||||++||||++
T Consensus        74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~laral~  144 (213)
T TIGR01277        74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP---------EQLSGGQRQRVALARCLV  144 (213)
T ss_pred             EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc---------ccCCHHHHHHHHHHHHHh
Confidence            9999999885 79999997642111     11234455666667766655554         579999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcC
Q 020527          234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN  302 (325)
Q Consensus       234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~  302 (325)
                      .+|+++||||||++||+.++..+.+.|+++.++  .+.|+|++||+++.+.. ||++++|++|++++.|+
T Consensus       145 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~--~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~  212 (213)
T TIGR01277       145 RPNPILLLDEPFSALDPLLREEMLALVKQLCSE--RQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD  212 (213)
T ss_pred             cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence            999999999999999999999999999998652  37899999999998864 99999999999998875

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.2e-49  Score=362.78  Aligned_cols=219  Identities=28%  Similarity=0.458  Sum_probs=177.4

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC-----CCCCeEEECCEeCCC--CCH
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LDI  151 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~-----~~~G~I~i~g~~i~~--~~~  151 (325)
                      .|+++||+++|+++   .+|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|.++..  .+.
T Consensus        13 ~l~i~nl~~~~~~~---~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~   89 (269)
T PRK14259         13 IISLQNVTISYGTF---EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDP   89 (269)
T ss_pred             eEEEEeEEEEECCE---EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCH
Confidence            59999999999753   59999999999999999999999999999999999987     689999999998753  344


Q ss_pred             HHHhcceEEEccCCcCccccHHHHHhcCCCCC-CC---HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 020527          152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD-VK---NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA  227 (325)
Q Consensus       152 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~  227 (325)
                      ..+++.++|+||++.+|+.|++||+.++.... ..   .+.+.++++.+++...+..     .......+||||||||++
T Consensus        90 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-----~~~~~~~~LS~G~~qrl~  164 (269)
T PRK14259         90 VEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKD-----KLNESGYSLSGGQQQRLC  164 (269)
T ss_pred             HHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhh-----hhCCCcccCCHHHHHHHH
Confidence            56678899999999988779999998753211 11   1222333333332211110     011123579999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeC-----------C
Q 020527          228 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD-----------G  295 (325)
Q Consensus       228 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~-----------G  295 (325)
                      |||||+.+|++|||||||++||+.++..+.++|+++++    +.|||++||+++.+.. ||++++|++           |
T Consensus       165 laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~----~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g  240 (269)
T PRK14259        165 IARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK----NFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVG  240 (269)
T ss_pred             HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc----CCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccc
Confidence            99999999999999999999999999999999999842    5799999999998864 999999996           6


Q ss_pred             EEEEEcChHHHhhc
Q 020527          296 RIIEVGNHAELLHK  309 (325)
Q Consensus       296 ~i~~~g~~~~l~~~  309 (325)
                      ++++.|++++++..
T Consensus       241 ~~~~~~~~~~~~~~  254 (269)
T PRK14259        241 YLVEFNETKKIFNS  254 (269)
T ss_pred             eEEEeCCHHHHHhC
Confidence            79999999999764

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.1e-49  Score=362.16  Aligned_cols=226  Identities=30%  Similarity=0.465  Sum_probs=185.2

Q ss_pred             EEEEEEEEECCCCC-CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC-C----CCCeEEECCEeCCCCCHHH
Q 020527           80 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-P----SDGQIYIDGFPLTDLDIRW  153 (325)
Q Consensus        80 i~~~~v~~~y~~~~-~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~-~----~~G~I~i~g~~i~~~~~~~  153 (325)
                      ++++|++..|.... ...+++||||+|++||++||||+|||||||+.++|+|+++ |    .+|+|.|+|+++-.++.++
T Consensus         2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~   81 (316)
T COG0444           2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE   81 (316)
T ss_pred             ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence            68999999996532 2579999999999999999999999999999999999998 4    5799999999998887654


Q ss_pred             H----hcceEEEccCCcC-c-c-ccHHHHHhcCCC--CCC-C----HHHHHHHHHHcCHHH---HHHhCCCCcccccCCC
Q 020527          154 L----REKIGFVGQEPQL-L-Q-MDIKSNIMYGCP--KDV-K----NEDIEWAAKQAYVHE---FILSLPCGYETLVDDD  216 (325)
Q Consensus       154 ~----r~~i~~v~Q~~~l-~-~-~tv~enl~~~~~--~~~-~----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  216 (325)
                      +    .+.|+||||+|.- + + .||.+.+.-...  ... .    .++..+.++.+++.+   .++.+|         +
T Consensus        82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP---------h  152 (316)
T COG0444          82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP---------H  152 (316)
T ss_pred             HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC---------c
Confidence            3    2579999999853 3 3 577666643211  111 1    223455666666542   455555         6


Q ss_pred             CCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCC
Q 020527          217 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG  295 (325)
Q Consensus       217 ~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G  295 (325)
                      +|||||||||.||.||+.+|++||+||||++||...+.+++++|++++++  .|.|+|+||||+..+.. ||||+||..|
T Consensus       153 elSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e--~~~aiilITHDl~vva~~aDri~VMYaG  230 (316)
T COG0444         153 ELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQRE--KGTALILITHDLGVVAEIADRVAVMYAG  230 (316)
T ss_pred             ccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcceEEEEECc
Confidence            89999999999999999999999999999999999999999999999874  69999999999998865 9999999999


Q ss_pred             EEEEEcChHHHhhc-CHHHHHH
Q 020527          296 RIIEVGNHAELLHK-GRLYAKL  316 (325)
Q Consensus       296 ~i~~~g~~~~l~~~-~~~~~~~  316 (325)
                      +|+|.|+.++++.+ .+-|.+.
T Consensus       231 ~iVE~g~~~~i~~~P~HPYT~~  252 (316)
T COG0444         231 RIVEEGPVEEIFKNPKHPYTRG  252 (316)
T ss_pred             EEEEeCCHHHHhcCCCChHHHH
Confidence            99999999999876 3445443

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.7e-50  Score=339.40  Aligned_cols=217  Identities=32%  Similarity=0.475  Sum_probs=186.1

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCC---------
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL---------  149 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~---------  149 (325)
                      .|+++|+.|+|+..   .+|++||++-++|+++.|+|.|||||||+||||.-|..|+.|+|.++|+.+.-.         
T Consensus         6 ~l~v~dlHK~~G~~---eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~   82 (256)
T COG4598           6 ALEVEDLHKRYGEH---EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP   82 (256)
T ss_pred             ceehhHHHhhcccc---hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence            58999999999864   599999999999999999999999999999999999999999999999887421         


Q ss_pred             -C---HHHHhcceEEEccCCcCc-cccHHHHHhcC------CCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCC
Q 020527          150 -D---IRWLREKIGFVGQEPQLL-QMDIKSNIMYG------CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLL  218 (325)
Q Consensus       150 -~---~~~~r~~i~~v~Q~~~l~-~~tv~enl~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  218 (325)
                       +   ...+|.+.++|||+.+|+ .+||.||+.-.      .++....++....+.++++.+..+.+|         ..|
T Consensus        83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP---------~~L  153 (256)
T COG4598          83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYP---------AHL  153 (256)
T ss_pred             CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCc---------ccc
Confidence             1   234688899999999998 69999999653      111111233344555666666555555         579


Q ss_pred             ChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEE
Q 020527          219 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI  297 (325)
Q Consensus       219 SgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i  297 (325)
                      ||||+||++|||||+.+|+++|+|||||+|||+-.-++++.++++++   .|+|+++|||.|.+++. +.+|+++++|.|
T Consensus       154 SGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAe---EgrTMv~VTHEM~FAR~Vss~v~fLh~G~i  230 (256)
T COG4598         154 SGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAE---EGRTMVVVTHEMGFARDVSSHVIFLHQGKI  230 (256)
T ss_pred             CchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHH---hCCeEEEEeeehhHHHhhhhheEEeeccee
Confidence            99999999999999999999999999999999999999999999986   48999999999999987 899999999999


Q ss_pred             EEEcChHHHhhcC
Q 020527          298 IEVGNHAELLHKG  310 (325)
Q Consensus       298 ~~~g~~~~l~~~~  310 (325)
                      -+.|+|++++.+.
T Consensus       231 EE~G~P~qvf~nP  243 (256)
T COG4598         231 EEEGPPEQVFGNP  243 (256)
T ss_pred             cccCChHHHhcCC
Confidence            9999999999763

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=4.2e-49  Score=363.05  Aligned_cols=216  Identities=28%  Similarity=0.384  Sum_probs=180.6

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCC--------CCeEEECCEeCCCCCH
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS--------DGQIYIDGFPLTDLDI  151 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~--------~G~I~i~g~~i~~~~~  151 (325)
                      |+++|++++|+++   .+|+|+||+|++||+++|+||||||||||+++|+|+++|+        +|+|.++|.++...+.
T Consensus         2 l~~~nl~~~~~~~---~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~   78 (272)
T PRK13547          2 LTADHLHVARRHR---AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA   78 (272)
T ss_pred             eEEEEEEEEECCE---eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence            7899999999653   6999999999999999999999999999999999999998        9999999999876666


Q ss_pred             HHHhcceEEEccCCcC-ccccHHHHHhcCCCCC------CC---HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChH
Q 020527          152 RWLREKIGFVGQEPQL-LQMDIKSNIMYGCPKD------VK---NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGG  221 (325)
Q Consensus       152 ~~~r~~i~~v~Q~~~l-~~~tv~enl~~~~~~~------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgG  221 (325)
                      ..+++.++|+||++.+ +..|++||+.++....      ..   .+.+.++++..++.+..++         ...+||||
T Consensus        79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LSgG  149 (272)
T PRK13547         79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGR---------DVTTLSGG  149 (272)
T ss_pred             HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcC---------CcccCCHH
Confidence            6667789999999864 5789999998753111      00   1123334444444443322         23679999


Q ss_pred             HHHHHHHHHHHc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEE
Q 020527          222 QKQRIAIARAIL---------RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVV  291 (325)
Q Consensus       222 q~QRv~iAral~---------~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~  291 (325)
                      |||||+|||||+         .+|++|||||||++||+.++..+.+.|+++.++  .|+|||++|||++.+. .||++++
T Consensus       150 ~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tviiisH~~~~~~~~~d~i~~  227 (272)
T PRK13547        150 ELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARD--WNLGVLAIVHDPNLAARHADRIAM  227 (272)
T ss_pred             HHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHh--cCCEEEEEECCHHHHHHhCCEEEE
Confidence            999999999999         599999999999999999999999999998652  3789999999999986 5999999


Q ss_pred             EeCCEEEEEcChHHHhhc
Q 020527          292 IDDGRIIEVGNHAELLHK  309 (325)
Q Consensus       292 l~~G~i~~~g~~~~l~~~  309 (325)
                      |++|++++.|+++++.+.
T Consensus       228 l~~G~i~~~g~~~~~~~~  245 (272)
T PRK13547        228 LADGAIVAHGAPADVLTP  245 (272)
T ss_pred             EECCeEEEecCHHHHcCH
Confidence            999999999999988653

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.1e-49  Score=361.94  Aligned_cols=219  Identities=29%  Similarity=0.459  Sum_probs=176.4

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC-----CCCCeEEECCEeCCCC--CH
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTDL--DI  151 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~-----~~~G~I~i~g~~i~~~--~~  151 (325)
                      .|+++|++++|++   ..+|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|+++...  +.
T Consensus        21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~   97 (268)
T PRK14248         21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV   97 (268)
T ss_pred             eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence            4899999999974   369999999999999999999999999999999999864     7999999999998642  23


Q ss_pred             HHHhcceEEEccCCcCccccHHHHHhcCCCC-CC-CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527          152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR  225 (325)
Q Consensus       152 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~-~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR  225 (325)
                      ..++++++|+||++.+|+.|++||+.++... .. ..    +.+..+++..++...+.     ........+||||||||
T Consensus        98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~LSgGq~qr  172 (268)
T PRK14248         98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-----DRLHSSALSLSGGQQQR  172 (268)
T ss_pred             HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-----HHHhcCcccCCHHHHHH
Confidence            4567789999999998878999999865211 11 11    11222333333211000     00111236799999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChH
Q 020527          226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA  304 (325)
Q Consensus       226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~  304 (325)
                      ++|||||+.+|++|||||||++||+.++..+.+.|+++.+    +.|||++|||++.+. .|||+++|++|++++.|+++
T Consensus       173 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~----~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~  248 (268)
T PRK14248        173 LCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE----EYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTE  248 (268)
T ss_pred             HHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc----CCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence            9999999999999999999999999999999999999853    479999999999886 59999999999999999999


Q ss_pred             HHhhc
Q 020527          305 ELLHK  309 (325)
Q Consensus       305 ~l~~~  309 (325)
                      ++++.
T Consensus       249 ~~~~~  253 (268)
T PRK14248        249 QIFTS  253 (268)
T ss_pred             HHHhC
Confidence            98764

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.3e-49  Score=359.58  Aligned_cols=219  Identities=29%  Similarity=0.463  Sum_probs=177.4

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC--C---CCCeEEECCEeCCC--CCH
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--P---SDGQIYIDGFPLTD--LDI  151 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~--~---~~G~I~i~g~~i~~--~~~  151 (325)
                      .|+++|+++.|+++   ++|+|+||+|++||+++|+||||||||||+++|+|+++  |   ++|+|.++|+++..  ...
T Consensus        12 ~l~i~~l~~~~~~~---~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~   88 (259)
T PRK14274         12 VYQINGMNLWYGQH---HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL   88 (259)
T ss_pred             eEEEeeEEEEECCe---eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence            59999999999743   59999999999999999999999999999999999997  3   59999999998853  233


Q ss_pred             HHHhcceEEEccCCcCccccHHHHHhcCCCC-C-CCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527          152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-D-VKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR  225 (325)
Q Consensus       152 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~-~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR  225 (325)
                      ..+++.++|+||++.+|+.|++||+.++... . ...+    .+.++++..++.+.+..     .......+||||||||
T Consensus        89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~l~~~~~~LS~Gq~qr  163 (259)
T PRK14274         89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKD-----RLHTQALSLSGGQQQR  163 (259)
T ss_pred             HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhh-----hhhCCcccCCHHHHHH
Confidence            4567889999999998877999999875211 1 1111    12223333333221100     0011235799999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChH
Q 020527          226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA  304 (325)
Q Consensus       226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~  304 (325)
                      ++|||||+.+|+++||||||++||+.++..+.+.|.++++    ++|+|++||+++.+. .|||+++|++|++++.|+++
T Consensus       164 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~----~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~  239 (259)
T PRK14274        164 LCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE----KYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTN  239 (259)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc----CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence            9999999999999999999999999999999999999852    579999999999886 49999999999999999999


Q ss_pred             HHhhc
Q 020527          305 ELLHK  309 (325)
Q Consensus       305 ~l~~~  309 (325)
                      +++++
T Consensus       240 ~~~~~  244 (259)
T PRK14274        240 KMFSN  244 (259)
T ss_pred             HHhhC
Confidence            98754

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4e-49  Score=360.17  Aligned_cols=205  Identities=30%  Similarity=0.446  Sum_probs=170.6

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      |+++|++++|++   ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...     +..++
T Consensus         2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~   73 (255)
T PRK11248          2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG   73 (255)
T ss_pred             EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence            789999999975   3599999999999999999999999999999999999999999999999987532     24689


Q ss_pred             EEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 020527          160 FVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL  233 (325)
Q Consensus       160 ~v~Q~~~l~~-~tv~enl~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~  233 (325)
                      |+||++.+++ .|++||+.++.. ....    .+.+.+.++..++.+..++.         ..+||||||||++|||||+
T Consensus        74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~---------~~~LSgGq~qrl~laral~  144 (255)
T PRK11248         74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRY---------IWQLSGGQRQRVGIARALA  144 (255)
T ss_pred             EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCC---------hhhCCHHHHHHHHHHHHHh
Confidence            9999998885 799999986421 1111    12233444555554443332         2579999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEe--CCEEEEEcCh
Q 020527          234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID--DGRIIEVGNH  303 (325)
Q Consensus       234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~--~G~i~~~g~~  303 (325)
                      .+|++|||||||++||+.++..+.+.|+++.++  .|+|||++|||++.+.. ||++++|+  +|++++.++.
T Consensus       145 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~--~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~  215 (255)
T PRK11248        145 ANPQLLLLDEPFGALDAFTREQMQTLLLKLWQE--TGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL  215 (255)
T ss_pred             cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence            999999999999999999999999999998542  37899999999999865 99999998  5999988654

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.7e-49  Score=376.21  Aligned_cols=211  Identities=32%  Similarity=0.502  Sum_probs=176.3

Q ss_pred             EEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCC----HHHHhcceE
Q 020527           84 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRWLREKIG  159 (325)
Q Consensus        84 ~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~----~~~~r~~i~  159 (325)
                      |++++|++.    .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++....    ....++.++
T Consensus         4 ~l~~~~~~~----~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~   78 (354)
T TIGR02142         4 RFSKRLGDF----SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG   78 (354)
T ss_pred             EEEEEECCE----EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence            899999742    35 999999999999999999999999999999999999999999999885432    224567899


Q ss_pred             EEccCCcCcc-ccHHHHHhcCCCCCCC---HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 020527          160 FVGQEPQLLQ-MDIKSNIMYGCPKDVK---NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD  235 (325)
Q Consensus       160 ~v~Q~~~l~~-~tv~enl~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~  235 (325)
                      |+||++.+|+ .||+||+.++......   .+.+.+.++..++.+..++.+         .+|||||||||+|||||+.+
T Consensus        79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LSgGqkqRvalAraL~~~  149 (354)
T TIGR02142        79 YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLP---------GRLSGGEKQRVAIGRALLSS  149 (354)
T ss_pred             EEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCCh---------hhCCHHHHHHHHHHHHHHcC
Confidence            9999999885 7999999886321111   122344555555554444433         67999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhcC
Q 020527          236 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG  310 (325)
Q Consensus       236 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~  310 (325)
                      |++|||||||++||+.+++.+.+.|+++.++  .|+|+|++|||++.+.. ||++++|++|++++.|++++++...
T Consensus       150 p~lllLDEPts~LD~~~~~~l~~~L~~l~~~--~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~  223 (354)
T TIGR02142       150 PRLLLMDEPLAALDDPRKYEILPYLERLHAE--FGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP  223 (354)
T ss_pred             CCEEEEcCCCcCCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCc
Confidence            9999999999999999999999999998753  37899999999999865 9999999999999999999987653

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=2.1e-49  Score=385.87  Aligned_cols=230  Identities=33%  Similarity=0.486  Sum_probs=191.3

Q ss_pred             cEEEEEEEEECCCC--------CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeC--CC
Q 020527           79 HVQFVNISFHYPSR--------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL--TD  148 (325)
Q Consensus        79 ~i~~~~v~~~y~~~--------~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i--~~  148 (325)
                      .++++||++.|..+        ....+++||||++++||++||||+||||||||.|+|+|+++|++|+|.++|.++  ..
T Consensus       280 ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~  359 (539)
T COG1123         280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTG  359 (539)
T ss_pred             eeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccccc
Confidence            48899999999741        135789999999999999999999999999999999999999999999999873  21


Q ss_pred             CCHHHHhcceEEEccCCcC--c-cccHHHHHhcCCC--CC----CCHHHHHHHHHHcCHHH-HHHhCCCCcccccCCCCC
Q 020527          149 LDIRWLREKIGFVGQEPQL--L-QMDIKSNIMYGCP--KD----VKNEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLL  218 (325)
Q Consensus       149 ~~~~~~r~~i~~v~Q~~~l--~-~~tv~enl~~~~~--~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L  218 (325)
                      -.....|+++-++||||+-  . ..||.+++.....  ..    ...+++.+.++..++.+ ++++.|         ++|
T Consensus       360 ~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP---------~el  430 (539)
T COG1123         360 GELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYP---------HEL  430 (539)
T ss_pred             chhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCc---------hhc
Confidence            1234567899999999963  3 5899999975421  11    11223555566666654 556655         689


Q ss_pred             ChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEE
Q 020527          219 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI  297 (325)
Q Consensus       219 SgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i  297 (325)
                      ||||||||||||||+.+|++|++|||||+||+..+.++.++|++++++  .|.|.|+||||++.++. ||||++|++|+|
T Consensus       431 SGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e--~g~t~lfISHDl~vV~~i~drv~vm~~G~i  508 (539)
T COG1123         431 SGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEE--LGLTYLFISHDLAVVRYIADRVAVMYDGRI  508 (539)
T ss_pred             CcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHH--hCCEEEEEeCCHHHHHhhCceEEEEECCeE
Confidence            999999999999999999999999999999999999999999999875  58999999999999986 999999999999


Q ss_pred             EEEcChHHHhhc-CHHHHHHHHH
Q 020527          298 IEVGNHAELLHK-GRLYAKLVKR  319 (325)
Q Consensus       298 ~~~g~~~~l~~~-~~~~~~~~~~  319 (325)
                      ++.|+.++++++ .+.|.+.+..
T Consensus       509 VE~G~~~~v~~~p~h~Ytr~L~~  531 (539)
T COG1123         509 VEEGPTEKVFENPQHPYTRKLLA  531 (539)
T ss_pred             EEeCCHHHHhcCCCChHHHHHHH
Confidence            999999999876 5567665543

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=100.00  E-value=3.1e-49  Score=357.83  Aligned_cols=217  Identities=24%  Similarity=0.295  Sum_probs=172.3

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCC--CCCCCeEEECCEeCCCCCHHHH-hc
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY--EPSDGQIYIDGFPLTDLDIRWL-RE  156 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~--~~~~G~I~i~g~~i~~~~~~~~-r~  156 (325)
                      |+++|++++|++   +.+|+|+||+|++||+++|+||||||||||+++|+|++  +|++|+|.++|+++...+.... +.
T Consensus         1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~   77 (243)
T TIGR01978         1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA   77 (243)
T ss_pred             CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence            478999999974   35999999999999999999999999999999999995  7999999999999876665443 44


Q ss_pred             ceEEEccCCcCcc-ccHHHHHhcCCCCC--------CCHHHHHHHHHHcCHHHHHHhCCCCc-ccccCCC-CCChHHHHH
Q 020527          157 KIGFVGQEPQLLQ-MDIKSNIMYGCPKD--------VKNEDIEWAAKQAYVHEFILSLPCGY-ETLVDDD-LLSGGQKQR  225 (325)
Q Consensus       157 ~i~~v~Q~~~l~~-~tv~enl~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~LSgGq~QR  225 (325)
                      .++|+||++.+++ .|++||+.+.....        ......   .  ..+.+.++.+.... ....... .||||||||
T Consensus        78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qr  152 (243)
T TIGR01978        78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDF---L--KLLKAKLALLGMDEEFLNRSVNEGFSGGEKKR  152 (243)
T ss_pred             ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHH---H--HHHHHHHHHcCCchhhcccccccCcCHHHHHH
Confidence            5999999998884 69999987531100        000000   0  11223333332210 0111223 499999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh--cCEEEEEeCCEEEEEcCh
Q 020527          226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVIDDGRIIEVGNH  303 (325)
Q Consensus       226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~--~d~v~~l~~G~i~~~g~~  303 (325)
                      ++|||||+.+|++|||||||++||+.+++.+.+.|+++++   +|+|||++|||++.+..  ||++++|++|++++.|++
T Consensus       153 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~  229 (243)
T TIGR01978       153 NEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE---PDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDV  229 (243)
T ss_pred             HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH---CCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCH
Confidence            9999999999999999999999999999999999999864   37899999999999864  799999999999999998


Q ss_pred             HHHh
Q 020527          304 AELL  307 (325)
Q Consensus       304 ~~l~  307 (325)
                      +++.
T Consensus       230 ~~~~  233 (243)
T TIGR01978       230 ELAK  233 (243)
T ss_pred             HHhc
Confidence            7553

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.8e-49  Score=358.50  Aligned_cols=219  Identities=31%  Similarity=0.503  Sum_probs=176.2

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcC---CCC--CCCeEEECCEeCCCCC--H
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL---YEP--SDGQIYIDGFPLTDLD--I  151 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl---~~~--~~G~I~i~g~~i~~~~--~  151 (325)
                      .|+++|+++.|+.   +.+|+|+||+|++||+++|+||||||||||+++|+|+   ++|  ++|+|.++|+++...+  .
T Consensus         3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~   79 (250)
T PRK14245          3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV   79 (250)
T ss_pred             EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence            4899999999975   3599999999999999999999999999999999997   455  5899999999986432  3


Q ss_pred             HHHhcceEEEccCCcCccccHHHHHhcCCCC-CC-CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527          152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR  225 (325)
Q Consensus       152 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~-~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR  225 (325)
                      ..+++.++|+||++.+|+.|++||+.++... .. ..    +.+.++++.+++.+.+..     .......+||||||||
T Consensus        80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~~~~LS~G~~qr  154 (250)
T PRK14245         80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKD-----KLKESAFALSGGQQQR  154 (250)
T ss_pred             HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhh-----hhhCCcccCCHHHHHH
Confidence            4567789999999988878999999864211 11 11    112233333333211100     0111235799999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChH
Q 020527          226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA  304 (325)
Q Consensus       226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~  304 (325)
                      ++|||||+.+|++|||||||++||+.++..+.+.|+++.    +++|||++|||++.+. .|||+++|++|++++.|+++
T Consensus       155 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~  230 (250)
T PRK14245        155 LCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK----KDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTK  230 (250)
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHH
Confidence            999999999999999999999999999999999999984    2579999999999885 59999999999999999999


Q ss_pred             HHhhc
Q 020527          305 ELLHK  309 (325)
Q Consensus       305 ~l~~~  309 (325)
                      +++++
T Consensus       231 ~~~~~  235 (250)
T PRK14245        231 KIFTN  235 (250)
T ss_pred             HHhcC
Confidence            99764

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.3e-49  Score=357.00  Aligned_cols=220  Identities=29%  Similarity=0.485  Sum_probs=178.2

Q ss_pred             ccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-----CCCeEEECCEeCC-CCCH
Q 020527           78 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLT-DLDI  151 (325)
Q Consensus        78 ~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-----~~G~I~i~g~~i~-~~~~  151 (325)
                      ..++++|+++.|++   +.+|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++. ..+.
T Consensus         2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~   78 (249)
T PRK14253          2 NKFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV   78 (249)
T ss_pred             CeEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccch
Confidence            46899999999974   3599999999999999999999999999999999999986     5999999999875 3344


Q ss_pred             HHHhcceEEEccCCcCccccHHHHHhcCCCC-CC-CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527          152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR  225 (325)
Q Consensus       152 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~-~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR  225 (325)
                      ..+++.++|+||++.+|+.|+.||+.++... .. ..    +.+.++++..++.+.+..     .......+||||||||
T Consensus        79 ~~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~LS~G~~qr  153 (249)
T PRK14253         79 ADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKD-----RLKSHAFGLSGGQQQR  153 (249)
T ss_pred             HHHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhH-----HhhcCcccCCHHHHHH
Confidence            5667889999999998889999999875211 11 11    112223333333211100     0011235799999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChH
Q 020527          226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA  304 (325)
Q Consensus       226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~  304 (325)
                      |+|||||+.+|+++||||||++||+.++..+.+.|+++.+    +.|||++||+++.+.. |||+++|++|++++.|+++
T Consensus       154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~----~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~  229 (249)
T PRK14253        154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK----NYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQ  229 (249)
T ss_pred             HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc----CCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence            9999999999999999999999999999999999999853    4799999999999865 9999999999999999998


Q ss_pred             HHhhc
Q 020527          305 ELLHK  309 (325)
Q Consensus       305 ~l~~~  309 (325)
                      ++...
T Consensus       230 ~~~~~  234 (249)
T PRK14253        230 VIFSN  234 (249)
T ss_pred             HHHcC
Confidence            88653

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.1e-49  Score=358.42  Aligned_cols=219  Identities=31%  Similarity=0.482  Sum_probs=176.3

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC-----CCCCeEEECCEeCCC--CCH
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LDI  151 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~-----~~~G~I~i~g~~i~~--~~~  151 (325)
                      .|+++|++++|+.   +++|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|+++..  .+.
T Consensus         4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~   80 (251)
T PRK14251          4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL   80 (251)
T ss_pred             eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence            4899999999974   369999999999999999999999999999999999997     479999999998753  223


Q ss_pred             HHHhcceEEEccCCcCccccHHHHHhcCCCC-CC-CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527          152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR  225 (325)
Q Consensus       152 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~-~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR  225 (325)
                      ..+++.++|++|++.+|+.|++||+.++... .. ..    ..+..+++..+++....     ........+||||||||
T Consensus        81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~LS~Gq~qr  155 (251)
T PRK14251         81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETK-----DNLDRNAQAFSGGQQQR  155 (251)
T ss_pred             HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchH-----HHhccChhhCCHHHHHH
Confidence            4567789999999998888999999865211 11 11    11222333333310000     00111235799999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChH
Q 020527          226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA  304 (325)
Q Consensus       226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~  304 (325)
                      ++|||||+.+|+++||||||++||+.++..+.+.|+++.+    +.|||++||+++.+.. ||++++|++|++++.|+++
T Consensus       156 ~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~----~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~  231 (251)
T PRK14251        156 ICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH----QYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTE  231 (251)
T ss_pred             HHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc----CCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHH
Confidence            9999999999999999999999999999999999999852    5799999999999865 9999999999999999999


Q ss_pred             HHhhc
Q 020527          305 ELLHK  309 (325)
Q Consensus       305 ~l~~~  309 (325)
                      +++..
T Consensus       232 ~~~~~  236 (251)
T PRK14251        232 EMFIA  236 (251)
T ss_pred             HHHhC
Confidence            98754

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=100.00  E-value=4.6e-49  Score=339.58  Aligned_cols=173  Identities=43%  Similarity=0.731  Sum_probs=159.7

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      |+++|++++|++. ..++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++++++
T Consensus         1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~   79 (173)
T cd03246           1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG   79 (173)
T ss_pred             CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence            4789999999753 236999999999999999999999999999999999999999999999999988777667788999


Q ss_pred             EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEE
Q 020527          160 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL  239 (325)
Q Consensus       160 ~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ll  239 (325)
                      |++|++.+|+.|++||+                                         ||||||||++|||||+.+|+++
T Consensus        80 ~~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~l  118 (173)
T cd03246          80 YLPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRIL  118 (173)
T ss_pred             EECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence            99999988888999987                                         7999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEE
Q 020527          240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI  297 (325)
Q Consensus       240 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i  297 (325)
                      ||||||++||+.++..+.+.++++++   +|+|+|++|||++.+..||++++|++|++
T Consensus       119 llDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~sh~~~~~~~~d~v~~l~~G~i  173 (173)
T cd03246         119 VLDEPNSHLDVEGERALNQAIAALKA---AGATRIVIAHRPETLASADRILVLEDGRV  173 (173)
T ss_pred             EEECCccccCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence            99999999999999999999999864   37899999999998877999999999974

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.8e-49  Score=357.00  Aligned_cols=219  Identities=33%  Similarity=0.487  Sum_probs=176.2

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCC--CC---CCCeEEECCEeCCCC--CH
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY--EP---SDGQIYIDGFPLTDL--DI  151 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~--~~---~~G~I~i~g~~i~~~--~~  151 (325)
                      .|+++|++++|+++   .+|+|+||+|++||+++|+||||||||||+++|+|+.  +|   ++|+|.++|+++...  ..
T Consensus         5 ~l~~~~l~~~~~~~---~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~   81 (252)
T PRK14239          5 ILQVSDLSVYYNKK---KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT   81 (252)
T ss_pred             eEEEEeeEEEECCe---eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence            48999999999743   5999999999999999999999999999999999995  36   599999999988532  23


Q ss_pred             HHHhcceEEEccCCcCccccHHHHHhcCCC-CCC-CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527          152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDV-KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR  225 (325)
Q Consensus       152 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~-~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR  225 (325)
                      ..+++.++|+||++.+|+.|++||+.++.. ... ..    +.+..+++..++.+.+..     .......+||||||||
T Consensus        82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~~~~LS~G~~qr  156 (252)
T PRK14239         82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKD-----RLHDSALGLSGGQQQR  156 (252)
T ss_pred             HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHH-----HHhcCcccCCHHHHHH
Confidence            456778999999999888999999986421 011 11    122233334333211110     0111235799999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChH
Q 020527          226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA  304 (325)
Q Consensus       226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~  304 (325)
                      ++|||||+.+|++|||||||++||+.++..+.+.|+++.+    ++|||++|||++.+. .|||+++|++|++++.|+++
T Consensus       157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~----~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~  232 (252)
T PRK14239        157 VCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD----DYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTK  232 (252)
T ss_pred             HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh----CCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence            9999999999999999999999999999999999999853    479999999999875 59999999999999999999


Q ss_pred             HHhhc
Q 020527          305 ELLHK  309 (325)
Q Consensus       305 ~l~~~  309 (325)
                      ++++.
T Consensus       233 ~~~~~  237 (252)
T PRK14239        233 QMFMN  237 (252)
T ss_pred             HHHhC
Confidence            98764

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.3e-48  Score=355.80  Aligned_cols=219  Identities=31%  Similarity=0.509  Sum_probs=178.1

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-----CCCeEEECCEeCCCC--CH
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDL--DI  151 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-----~~G~I~i~g~~i~~~--~~  151 (325)
                      .|+++|++++|++   +.+|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++...  +.
T Consensus         4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~   80 (251)
T PRK14270          4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV   80 (251)
T ss_pred             EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence            5899999999974   3599999999999999999999999999999999999875     799999999998543  23


Q ss_pred             HHHhcceEEEccCCcCccccHHHHHhcCCCC-CC-CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527          152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR  225 (325)
Q Consensus       152 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~-~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR  225 (325)
                      ...++.++|+||++.+|+.|++||+.++... .. ..    +.+.++++.+++.+.+..     ........||||||||
T Consensus        81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~~~~LS~G~~qr  155 (251)
T PRK14270         81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD-----DLKKSALKLSGGQQQR  155 (251)
T ss_pred             HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhh-----HhhCCcccCCHHHHHH
Confidence            4557789999999998889999999875211 11 11    122334444433211110     0111235799999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChH
Q 020527          226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA  304 (325)
Q Consensus       226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~  304 (325)
                      ++||||++.+|+++||||||++||+.++..+.+.|+++.+    +.|+|++||+++.+.. |||+++|++|++++.|+++
T Consensus       156 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~----~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~  231 (251)
T PRK14270        156 LCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK----EYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTE  231 (251)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh----CCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHH
Confidence            9999999999999999999999999999999999999863    4799999999998865 9999999999999999999


Q ss_pred             HHhhc
Q 020527          305 ELLHK  309 (325)
Q Consensus       305 ~l~~~  309 (325)
                      ++++.
T Consensus       232 ~~~~~  236 (251)
T PRK14270        232 KIFLE  236 (251)
T ss_pred             HHhcC
Confidence            98764

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=100.00  E-value=9.6e-49  Score=358.16  Aligned_cols=221  Identities=27%  Similarity=0.391  Sum_probs=177.7

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEe-----CCCCCHHH
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP-----LTDLDIRW  153 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~-----i~~~~~~~  153 (325)
                      .|+++|++++|+++   .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|++     +...+...
T Consensus         6 ~l~~~~l~~~~~~~---~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~   82 (258)
T PRK11701          6 LLSVRGLTKLYGPR---KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE   82 (258)
T ss_pred             eEEEeeeEEEcCCc---eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence            48999999999753   59999999999999999999999999999999999999999999999998     76554433


Q ss_pred             ----HhcceEEEccCCc--Cc-cccHHHHHhcCCC--CCCCHHHHHHHHHHcCHHHHHHhCCCCc-ccccCCCCCChHHH
Q 020527          154 ----LREKIGFVGQEPQ--LL-QMDIKSNIMYGCP--KDVKNEDIEWAAKQAYVHEFILSLPCGY-ETLVDDDLLSGGQK  223 (325)
Q Consensus       154 ----~r~~i~~v~Q~~~--l~-~~tv~enl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~LSgGq~  223 (325)
                          .++.++|+||++.  ++ ..|+.+|+.+...  .........     ..+.++++.++... .......+||||||
T Consensus        83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~  157 (258)
T PRK11701         83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIR-----ATAGDWLERVEIDAARIDDLPTTFSGGMQ  157 (258)
T ss_pred             HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHH-----HHHHHHHHHcCCChhHHhCCCccCCHHHH
Confidence                3567999999984  33 4688999864311  001111111     11234445444321 11223468999999


Q ss_pred             HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcC
Q 020527          224 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGN  302 (325)
Q Consensus       224 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~  302 (325)
                      ||++|||||+.+|++|||||||++||+.++..+.+.++++.++  .|.|||++|||++.+. .||++++|++|++++.|+
T Consensus       158 qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~  235 (258)
T PRK11701        158 QRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRE--LGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGL  235 (258)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence            9999999999999999999999999999999999999998652  4789999999999997 499999999999999999


Q ss_pred             hHHHhhc
Q 020527          303 HAELLHK  309 (325)
Q Consensus       303 ~~~l~~~  309 (325)
                      ++++.++
T Consensus       236 ~~~~~~~  242 (258)
T PRK11701        236 TDQVLDD  242 (258)
T ss_pred             HHHHhcC
Confidence            9998754

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1e-49  Score=332.16  Aligned_cols=211  Identities=30%  Similarity=0.439  Sum_probs=179.0

Q ss_pred             cEEEEEEEEECCCCC-CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHH---HH
Q 020527           79 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WL  154 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~-~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~---~~  154 (325)
                      .|+++++++..+... ...+|++|+|.|++||.++||||||||||||+-+++||..|++|+|.+.|+++..++..   .+
T Consensus         6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~   85 (228)
T COG4181           6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL   85 (228)
T ss_pred             eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence            488999999886532 35799999999999999999999999999999999999999999999999999887743   33


Q ss_pred             h-cceEEEccCCcCc-cccHHHHHhcCCCCC-----CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 020527          155 R-EKIGFVGQEPQLL-QMDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA  227 (325)
Q Consensus       155 r-~~i~~v~Q~~~l~-~~tv~enl~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~  227 (325)
                      | +++|+|||.++|. ++|..||++.+....     .........++++++.+.+..+|         .+|||||+|||+
T Consensus        86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP---------~qLSGGEQQRVA  156 (228)
T COG4181          86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYP---------AQLSGGEQQRVA  156 (228)
T ss_pred             hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCc---------cccCchHHHHHH
Confidence            3 6799999999987 699999998753211     11122334455555544444444         789999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEE
Q 020527          228 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEV  300 (325)
Q Consensus       228 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~  300 (325)
                      ||||++..|+||+.||||.+||..+-+++.+++..+.++  .|.|.|+||||...+.+|+|++.|.+|+++++
T Consensus       157 iARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre--~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~  227 (228)
T COG4181         157 LARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRE--RGTTLVLVTHDPQLAARCDRQLRLRSGRLVED  227 (228)
T ss_pred             HHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhh--cCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence            999999999999999999999999999999999999875  69999999999999999999999999999753

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.7e-48  Score=357.73  Aligned_cols=219  Identities=29%  Similarity=0.464  Sum_probs=176.5

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC-----CCCCeEEECCEeCCC--CCH
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LDI  151 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~-----~~~G~I~i~g~~i~~--~~~  151 (325)
                      .|+++|++++|+++   ++|+|+||+|++||+++|+|+||||||||+++|+|+++     |++|+|.++|.++..  ...
T Consensus        24 ~l~~~~l~~~~~~~---~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~  100 (271)
T PRK14238         24 VFDTQNLNLWYGED---HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV  100 (271)
T ss_pred             EEEEeeeEEEECCc---ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence            59999999999743   59999999999999999999999999999999999997     699999999998853  234


Q ss_pred             HHHhcceEEEccCCcCccccHHHHHhcCCCC-CCCHH-H----HHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527          152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DVKNE-D----IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR  225 (325)
Q Consensus       152 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~-~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR  225 (325)
                      ..+++.++|+||++.+|..|++||+.++... ....+ .    +.++++..++.+.+..     .......+||||||||
T Consensus       101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~-----~~~~~~~~LSgGe~qr  175 (271)
T PRK14238        101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKD-----RLHDNAYGLSGGQQQR  175 (271)
T ss_pred             HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHH-----HHhcCcccCCHHHHHH
Confidence            4567889999999998878999999864211 11111 1    1222222211110100     0011235799999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChH
Q 020527          226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA  304 (325)
Q Consensus       226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~  304 (325)
                      ++|||||+.+|++|||||||++||+.++..+.+.|+++.+    ++|+|++|||++.+.. ||++++|++|++++.|+++
T Consensus       176 v~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~----~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~  251 (271)
T PRK14238        176 LCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK----DYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTD  251 (271)
T ss_pred             HHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc----CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence            9999999999999999999999999999999999999853    5799999999999865 9999999999999999999


Q ss_pred             HHhhc
Q 020527          305 ELLHK  309 (325)
Q Consensus       305 ~l~~~  309 (325)
                      ++.++
T Consensus       252 ~~~~~  256 (271)
T PRK14238        252 KIFSN  256 (271)
T ss_pred             HHHcC
Confidence            98764

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=100.00  E-value=6.3e-49  Score=351.78  Aligned_cols=207  Identities=27%  Similarity=0.407  Sum_probs=175.8

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      |+++|++++|++   ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...   . ++.++
T Consensus         1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~---~-~~~~~   73 (223)
T TIGR03740         1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK---D-LHKIG   73 (223)
T ss_pred             CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc---c-cccEE
Confidence            478999999974   3599999999999999999999999999999999999999999999999887532   1 25799


Q ss_pred             EEccCCcCcc-ccHHHHHhcCCC-CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC
Q 020527          160 FVGQEPQLLQ-MDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA  237 (325)
Q Consensus       160 ~v~Q~~~l~~-~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~  237 (325)
                      |+||++.++. .|++||+.++.. .......+.++++..++.+..++.+         .+|||||+||++||||++.+|+
T Consensus        74 ~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~~rv~laral~~~p~  144 (223)
T TIGR03740        74 SLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKA---------KQFSLGMKQRLGIAIALLNHPK  144 (223)
T ss_pred             EEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhH---------hhCCHHHHHHHHHHHHHhcCCC
Confidence            9999998874 799999975321 1122345556666666665544433         5799999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHH
Q 020527          238 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAE  305 (325)
Q Consensus       238 llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~  305 (325)
                      ++||||||++||+.+++.+.+.|.++++   +|.|+|++|||++.+. .|||+++|++|++++.|++.+
T Consensus       145 llllDEP~~~LD~~~~~~l~~~L~~~~~---~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~  210 (223)
T TIGR03740       145 LLILDEPTNGLDPIGIQELRELIRSFPE---QGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK  210 (223)
T ss_pred             EEEECCCccCCCHHHHHHHHHHHHHHHH---CCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence            9999999999999999999999999864   3789999999999985 599999999999999998765

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.4e-48  Score=354.29  Aligned_cols=219  Identities=29%  Similarity=0.466  Sum_probs=177.6

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC--C---CCCeEEECCEeCCCC--CH
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--P---SDGQIYIDGFPLTDL--DI  151 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~--~---~~G~I~i~g~~i~~~--~~  151 (325)
                      .|+++|++++|++   ..+|+|+||+|++||+++|+||||||||||+++|+|+++  |   ++|+|.++|.++...  ..
T Consensus         4 ~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~   80 (252)
T PRK14256          4 KVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP   80 (252)
T ss_pred             EEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCCh
Confidence            5899999999974   359999999999999999999999999999999999986  4   699999999998543  23


Q ss_pred             HHHhcceEEEccCCcCcc-ccHHHHHhcCCCC-C-CCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHH
Q 020527          152 RWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPK-D-VKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ  224 (325)
Q Consensus       152 ~~~r~~i~~v~Q~~~l~~-~tv~enl~~~~~~-~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~Q  224 (325)
                      ..+++.++|+||++.+|+ .|++||+.++... . ...    +.+.++++..++.+.+...     ......+|||||||
T Consensus        81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~~~~LS~G~~q  155 (252)
T PRK14256         81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDR-----LKSNAMELSGGQQQ  155 (252)
T ss_pred             HHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHH-----hhCCcCcCCHHHHH
Confidence            456788999999999885 7999999764211 1 111    1223334444432211100     01123679999999


Q ss_pred             HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcCh
Q 020527          225 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNH  303 (325)
Q Consensus       225 Rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~  303 (325)
                      |++|||||+.+|++|||||||++||+.++..+.+.|+++.+    ++|||++||+++.+. .||++++|++|++++.|++
T Consensus       156 rl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~----~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~  231 (252)
T PRK14256        156 RLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE----KYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGET  231 (252)
T ss_pred             HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh----CCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence            99999999999999999999999999999999999999953    469999999999985 5999999999999999999


Q ss_pred             HHHhhc
Q 020527          304 AELLHK  309 (325)
Q Consensus       304 ~~l~~~  309 (325)
                      ++++..
T Consensus       232 ~~~~~~  237 (252)
T PRK14256        232 KKIFTT  237 (252)
T ss_pred             HHHHhC
Confidence            998764

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=100.00  E-value=6.5e-49  Score=340.08  Aligned_cols=178  Identities=36%  Similarity=0.660  Sum_probs=161.0

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      |+++|++++|+++ ..++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+++.++
T Consensus         1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~   78 (178)
T cd03247           1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS   78 (178)
T ss_pred             CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence            4789999999753 13599999999999999999999999999999999999999999999999987654 455678899


Q ss_pred             EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEE
Q 020527          160 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL  239 (325)
Q Consensus       160 ~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ll  239 (325)
                      |+||++.+++.|++||+                                      ...||||||||++||||++.+|++|
T Consensus        79 ~~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~l  120 (178)
T cd03247          79 VLNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIV  120 (178)
T ss_pred             EEccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence            99999988888999987                                      1469999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEc
Q 020527          240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG  301 (325)
Q Consensus       240 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g  301 (325)
                      ||||||++||+.+++.+.+.++++.    ++.|+|++||+++.+..||++++|++|++++.|
T Consensus       121 llDEP~~~LD~~~~~~l~~~l~~~~----~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~  178 (178)
T cd03247         121 LLDEPTVGLDPITERQLLSLIFEVL----KDKTLIWITHHLTGIEHMDKILFLENGKIIMQG  178 (178)
T ss_pred             EEECCcccCCHHHHHHHHHHHHHHc----CCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence            9999999999999999999999884    268999999999998779999999999998754

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-48  Score=356.02  Aligned_cols=219  Identities=31%  Similarity=0.490  Sum_probs=177.0

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-----CCCeEEECCEeCCCC--CH
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDL--DI  151 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-----~~G~I~i~g~~i~~~--~~  151 (325)
                      .|+++|+++.|++   .++++|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++...  ..
T Consensus         3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~   79 (250)
T PRK14262          3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV   79 (250)
T ss_pred             eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence            5899999999974   3699999999999999999999999999999999999984     899999999987642  22


Q ss_pred             HHHhcceEEEccCCcCccccHHHHHhcCCCC-C-CCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527          152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-D-VKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR  225 (325)
Q Consensus       152 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~-~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR  225 (325)
                      ..+++.++|+||++.+|+.|++||+.++... . ...    +.+..+++..++.+.+..     .......+||||||||
T Consensus        80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~~~~LS~Gq~qr  154 (250)
T PRK14262         80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKS-----ELNKPGTRLSGGQQQR  154 (250)
T ss_pred             HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHH-----HHhCChhhcCHHHHHH
Confidence            3457789999999998889999999864211 1 111    112233333333211110     0111235799999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChH
Q 020527          226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA  304 (325)
Q Consensus       226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~  304 (325)
                      ++|||||+.+|++|||||||++||+.++..+.+.|.++.+    ++|+|++||+++.+. .||++++|++|+++..|+++
T Consensus       155 ~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~----~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~  230 (250)
T PRK14262        155 LCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE----NYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTR  230 (250)
T ss_pred             HHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc----CcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence            9999999999999999999999999999999999999853    579999999999875 59999999999999999999


Q ss_pred             HHhhc
Q 020527          305 ELLHK  309 (325)
Q Consensus       305 ~l~~~  309 (325)
                      ++...
T Consensus       231 ~~~~~  235 (250)
T PRK14262        231 EIVER  235 (250)
T ss_pred             HHHhC
Confidence            98754

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.6e-49  Score=358.17  Aligned_cols=219  Identities=30%  Similarity=0.481  Sum_probs=176.3

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-----CCCeEEECCEeCCC--CCH
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--LDI  151 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-----~~G~I~i~g~~i~~--~~~  151 (325)
                      .++++|++++|+++   .+|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++..  ...
T Consensus         4 ~l~i~~v~~~~~~~---~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~   80 (258)
T PRK14241          4 RIDVKDLNIYYGSF---HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP   80 (258)
T ss_pred             cEEEeeEEEEECCE---eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence            48999999999753   599999999999999999999999999999999999974     69999999998753  234


Q ss_pred             HHHhcceEEEccCCcCcc-ccHHHHHhcCCCC-CC-CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHH
Q 020527          152 RWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPK-DV-KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ  224 (325)
Q Consensus       152 ~~~r~~i~~v~Q~~~l~~-~tv~enl~~~~~~-~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~Q  224 (325)
                      ..+++.++|+||++.+|+ .|++||+.++... .. ..    +.+.++++..++.+.+..     .......+|||||||
T Consensus        81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~~~~LS~G~~q  155 (258)
T PRK14241         81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKD-----RLDKPGGGLSGGQQQ  155 (258)
T ss_pred             HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhh-----HhhCCcccCCHHHHH
Confidence            456788999999998885 7999999764211 11 11    122233333433211100     011123679999999


Q ss_pred             HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEe------CCEE
Q 020527          225 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVID------DGRI  297 (325)
Q Consensus       225 Rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~------~G~i  297 (325)
                      ||+|||||+.+|++|||||||++||+.++..+.+.|+++++    ++|||++||+++.+. .||++++|+      +|++
T Consensus       156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~----~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i  231 (258)
T PRK14241        156 RLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ----DYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRL  231 (258)
T ss_pred             HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc----CCEEEEEecCHHHHHHhCCEEEEEecccCCCCceE
Confidence            99999999999999999999999999999999999999852    479999999999885 599999997      7999


Q ss_pred             EEEcChHHHhhc
Q 020527          298 IEVGNHAELLHK  309 (325)
Q Consensus       298 ~~~g~~~~l~~~  309 (325)
                      ++.|++++++..
T Consensus       232 ~~~~~~~~~~~~  243 (258)
T PRK14241        232 VEIDDTEKIFSN  243 (258)
T ss_pred             EecCCHHHHHhC
Confidence            999999998764

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.1e-48  Score=357.71  Aligned_cols=219  Identities=29%  Similarity=0.437  Sum_probs=178.4

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC-----CCCCeEEECCEeCCCC--CH
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTDL--DI  151 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~-----~~~G~I~i~g~~i~~~--~~  151 (325)
                      .|+++|++++|++   +++|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|.++...  +.
T Consensus        20 ~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~   96 (267)
T PRK14237         20 ALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV   96 (267)
T ss_pred             EEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence            5999999999964   369999999999999999999999999999999999996     5899999999998532  34


Q ss_pred             HHHhcceEEEccCCcCccccHHHHHhcCCCC-C-CCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527          152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-D-VKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR  225 (325)
Q Consensus       152 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~-~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR  225 (325)
                      ..+++.|+|+||++.+|+.|++||+.++... . ...    +.+.++++..++.+.+..     .......+||||||||
T Consensus        97 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-----~~~~~~~~LS~G~~qr  171 (267)
T PRK14237         97 YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKD-----DLHKSALTLSGGQQQR  171 (267)
T ss_pred             HHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhh-----hhcCCcccCCHHHHHH
Confidence            4567889999999988888999999875211 1 111    122233344433211110     0112236799999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChH
Q 020527          226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA  304 (325)
Q Consensus       226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~  304 (325)
                      ++|||||+.+|++|||||||++||+.++..+.++|.++.+    +.|||++||+++.+. .||++++|++|++++.|+++
T Consensus       172 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~----~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~  247 (267)
T PRK14237        172 LCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK----NYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTR  247 (267)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc----CCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence            9999999999999999999999999999999999999842    579999999999885 59999999999999999999


Q ss_pred             HHhhc
Q 020527          305 ELLHK  309 (325)
Q Consensus       305 ~l~~~  309 (325)
                      ++...
T Consensus       248 ~~~~~  252 (267)
T PRK14237        248 NIFTN  252 (267)
T ss_pred             HHhcC
Confidence            98764

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.8e-48  Score=354.85  Aligned_cols=219  Identities=26%  Similarity=0.455  Sum_probs=178.3

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCC-----CCeEEECCEeCCCC--CH
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-----DGQIYIDGFPLTDL--DI  151 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~-----~G~I~i~g~~i~~~--~~  151 (325)
                      .|+++|++++|++   +.+|+|+||+|++|++++|+||||||||||+++|+|+++|+     +|+|.++|.++...  +.
T Consensus         4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~   80 (251)
T PRK14249          4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV   80 (251)
T ss_pred             eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence            4899999999974   35999999999999999999999999999999999999997     69999999988542  33


Q ss_pred             HHHhcceEEEccCCcCccccHHHHHhcCCCC-CC-CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527          152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR  225 (325)
Q Consensus       152 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~-~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR  225 (325)
                      ..+++.++|+||++.+|+.|++||+.++... .. ..    +.+..+++..++.+.+...     ......+||||||||
T Consensus        81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-----~~~~~~~LS~Gq~qr  155 (251)
T PRK14249         81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDN-----LHKSGLALSGGQQQR  155 (251)
T ss_pred             HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhH-----hhCCcccCCHHHHHH
Confidence            4567889999999998888999999875211 11 11    1122233333332211110     111236799999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChH
Q 020527          226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA  304 (325)
Q Consensus       226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~  304 (325)
                      ++|||||+.+|+++||||||++||+.++..+.++|+++.    +++|||++||+++.+.. ||++++|++|++++.|+++
T Consensus       156 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~  231 (251)
T PRK14249        156 LCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK----QNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTG  231 (251)
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh----cCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHH
Confidence            999999999999999999999999999999999999884    26799999999999865 8999999999999999999


Q ss_pred             HHhhc
Q 020527          305 ELLHK  309 (325)
Q Consensus       305 ~l~~~  309 (325)
                      ++...
T Consensus       232 ~~~~~  236 (251)
T PRK14249        232 EIFSR  236 (251)
T ss_pred             HHHhC
Confidence            98754

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=100.00  E-value=1.7e-48  Score=358.60  Aligned_cols=233  Identities=28%  Similarity=0.415  Sum_probs=182.5

Q ss_pred             ccEEEEEEEEECCCC------CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCH
Q 020527           78 GHVQFVNISFHYPSR------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI  151 (325)
Q Consensus        78 ~~i~~~~v~~~y~~~------~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~  151 (325)
                      ..|+++||+++|+..      .++.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.
T Consensus         2 ~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~   81 (268)
T PRK10419          2 TLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR   81 (268)
T ss_pred             ceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccCh
Confidence            358999999999730      02469999999999999999999999999999999999999999999999998876543


Q ss_pred             ---HHHhcceEEEccCCc--Cc-cccHHHHHhcCCC--CCCCHHHHHHHHHHcCHHHHHHhCCCC-cccccCCCCCChHH
Q 020527          152 ---RWLREKIGFVGQEPQ--LL-QMDIKSNIMYGCP--KDVKNEDIEWAAKQAYVHEFILSLPCG-YETLVDDDLLSGGQ  222 (325)
Q Consensus       152 ---~~~r~~i~~v~Q~~~--l~-~~tv~enl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~LSgGq  222 (325)
                         ..+++.++|+||++.  ++ ..|+.+|+.+...  ......     .....+.++++.+... .........|||||
T Consensus        82 ~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~-----~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge  156 (268)
T PRK10419         82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKA-----ERLARASEMLRAVDLDDSVLDKRPPQLSGGQ  156 (268)
T ss_pred             hHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHH-----HHHHHHHHHHHHcCCChhHhhCCCccCChHH
Confidence               245778999999984  44 4799999864311  011111     1111223344443221 11122336799999


Q ss_pred             HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEc
Q 020527          223 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG  301 (325)
Q Consensus       223 ~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g  301 (325)
                      |||++|||||+.+|++|||||||++||+.++..+.+.|+++.++  .+.|+|++||+++.+.. ||++++|++|++++.|
T Consensus       157 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~--~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g  234 (268)
T PRK10419        157 LQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQ--FGTACLFITHDLRLVERFCQRVMVMDNGQIVETQ  234 (268)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHH--cCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeC
Confidence            99999999999999999999999999999999999999998653  37899999999999875 9999999999999999


Q ss_pred             ChHHHhhcCHHHHHHH
Q 020527          302 NHAELLHKGRLYAKLV  317 (325)
Q Consensus       302 ~~~~l~~~~~~~~~~~  317 (325)
                      +++++.+....|...+
T Consensus       235 ~~~~~~~~~~~~~~~~  250 (268)
T PRK10419        235 PVGDKLTFSSPAGRVL  250 (268)
T ss_pred             ChhhccCCCCHHHHHH
Confidence            9999876544444433

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=100.00  E-value=2.8e-48  Score=350.45  Aligned_cols=213  Identities=31%  Similarity=0.531  Sum_probs=180.5

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      |+++|++++|++    ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+.  .++.++
T Consensus         1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~   74 (235)
T cd03299           1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDIS   74 (235)
T ss_pred             CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEE
Confidence            468999999964    38999999999999999999999999999999999999999999999999876443  357899


Q ss_pred             EEccCCcCc-cccHHHHHhcCCCCC-CC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 020527          160 FVGQEPQLL-QMDIKSNIMYGCPKD-VK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL  233 (325)
Q Consensus       160 ~v~Q~~~l~-~~tv~enl~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~  233 (325)
                      |+||++.+| ..|+.||+.++.... ..    .+.+.++++.+++.+++++.+         .+|||||+||++||||++
T Consensus        75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~laral~  145 (235)
T cd03299          75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP---------ETLSGGEQQRVAIARALV  145 (235)
T ss_pred             EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc---------ccCCHHHHHHHHHHHHHH
Confidence            999999888 589999998642111 11    122344555566655555444         579999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhc
Q 020527          234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK  309 (325)
Q Consensus       234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~  309 (325)
                      .+|++++|||||++||+.+++.+.+.++++.++  .|+|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus       146 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~--~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  220 (235)
T cd03299         146 VNPKILLLDEPFSALDVRTKEKLREELKKIRKE--FGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK  220 (235)
T ss_pred             cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence            999999999999999999999999999998642  37899999999999864 999999999999999999888764

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=100.00  E-value=7.6e-49  Score=353.44  Aligned_cols=214  Identities=30%  Similarity=0.489  Sum_probs=179.7

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      |+++|++++|+++   .+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.  .++.++
T Consensus         1 l~~~~l~~~~~~~---~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~   75 (232)
T cd03300           1 IELENVSKFYGGF---VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVN   75 (232)
T ss_pred             CEEEeEEEEeCCe---eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceE
Confidence            4689999999753   59999999999999999999999999999999999999999999999998875443  257899


Q ss_pred             EEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 020527          160 FVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL  233 (325)
Q Consensus       160 ~v~Q~~~l~~-~tv~enl~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~  233 (325)
                      |+||++.+|. .|+.||+.++.. ....    .+.+..+++..++.+++++.+         ..||+|||||++|||||+
T Consensus        76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~lS~G~~qrl~laral~  146 (232)
T cd03300          76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP---------SQLSGGQQQRVAIARALV  146 (232)
T ss_pred             EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHHHHHHh
Confidence            9999999884 699999976421 1111    122334445555554444433         579999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhc
Q 020527          234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK  309 (325)
Q Consensus       234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~  309 (325)
                      .+|+++||||||++||+.+++.+.+.|+++.++  .|.|||++||+++.+.. ||++++|++|++++.|+++++...
T Consensus       147 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~--~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~  221 (232)
T cd03300         147 NEPKVLLLDEPLGALDLKLRKDMQLELKRLQKE--LGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE  221 (232)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence            999999999999999999999999999998752  37899999999999864 999999999999999998888654

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.1e-48  Score=357.11  Aligned_cols=219  Identities=30%  Similarity=0.456  Sum_probs=178.3

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC-----CCCCeEEECCEeCCC--CCH
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LDI  151 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~-----~~~G~I~i~g~~i~~--~~~  151 (325)
                      .|+++||+++|+++   ++|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|.++..  .+.
T Consensus        10 ~l~i~~v~~~~~~~---~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~   86 (264)
T PRK14243         10 VLRTENLNVYYGSF---LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP   86 (264)
T ss_pred             EEEEeeeEEEECCE---EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence            48999999999743   59999999999999999999999999999999999986     489999999998742  234


Q ss_pred             HHHhcceEEEccCCcCccccHHHHHhcCCCCC-CC---HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 020527          152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD-VK---NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA  227 (325)
Q Consensus       152 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~  227 (325)
                      ..++++++|+||++.+|+.|++||+.++.... ..   .+.+..+++..++.+.+...     ......+||||||||++
T Consensus        87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-----~~~~~~~LSgGq~qrv~  161 (264)
T PRK14243         87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDK-----LKQSGLSLSGGQQQRLC  161 (264)
T ss_pred             HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHH-----hcCCcccCCHHHHHHHH
Confidence            55678899999999888779999998753211 11   12223334444443222111     11123579999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEe---------CCEE
Q 020527          228 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID---------DGRI  297 (325)
Q Consensus       228 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~---------~G~i  297 (325)
                      |||||+.+|++|||||||++||+.++..+.+.|.++.+    +.|||++||+++.+.. |||+++|+         +|++
T Consensus       162 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~----~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i  237 (264)
T PRK14243        162 IARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE----QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYL  237 (264)
T ss_pred             HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc----CCEEEEEecCHHHHHHhCCEEEEEecccccccccCceE
Confidence            99999999999999999999999999999999999853    4699999999998865 99999998         8999


Q ss_pred             EEEcChHHHhhc
Q 020527          298 IEVGNHAELLHK  309 (325)
Q Consensus       298 ~~~g~~~~l~~~  309 (325)
                      ++.|+++++++.
T Consensus       238 ~~~~~~~~~~~~  249 (264)
T PRK14243        238 VEFDRTEKIFNS  249 (264)
T ss_pred             EEeCCHHHHHhC
Confidence            999999999764

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=100.00  E-value=1.1e-47  Score=420.41  Aligned_cols=289  Identities=25%  Similarity=0.401  Sum_probs=240.3

Q ss_pred             eehHHHHhcCCcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEEE
Q 020527            4 LLGGMSIMIGQVSPEQLTKYVLYCEWLIYATW-RMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQF   82 (325)
Q Consensus         4 ~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   82 (325)
                      .+++|.+..+ ++++.+++++.++..+..|+. .+...+..+.++.++++|+.+++..++......   .  .....+++
T Consensus       322 ~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~---~--~~~~~i~~  395 (1490)
T TIGR01271       322 SVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEY---N--LTTTEVEM  395 (1490)
T ss_pred             HHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc---c--CCCCceEE
Confidence            3456666544 688888888888888877774 688899999999999999999997654321110   0  01124788


Q ss_pred             EEEEEECCCC-------------------------------CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcC
Q 020527           83 VNISFHYPSR-------------------------------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus        83 ~~v~~~y~~~-------------------------------~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      +|++|.|+..                               ..+++|+|+||+|++||+++|+||||||||||+++|+|+
T Consensus       396 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~  475 (1490)
T TIGR01271       396 VNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGE  475 (1490)
T ss_pred             ecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            8888888421                               013589999999999999999999999999999999999


Q ss_pred             CCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccc
Q 020527          132 YEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET  211 (325)
Q Consensus       132 ~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (325)
                      ++|++|+|.++|             +|+|++|+|.+|++||+|||.|+..  ...+...++.+.+++.+.++.++.++.+
T Consensus       476 ~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~--~~~~~~~~~~~~~~L~~~l~~l~~g~~t  540 (1490)
T TIGR01271       476 LEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLS--YDEYRYTSVIKACQLEEDIALFPEKDKT  540 (1490)
T ss_pred             CCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhccc--cchHHHHHHHHHHhHHHHHHhccccccc
Confidence            999999999988             4999999999999999999999843  2334455677778888999999999888


Q ss_pred             ccC--CCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHH-HHHhhccCCCCeEEEEEecCchHHHhcCE
Q 020527          212 LVD--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV-LHALRNDCKTKRTVIVIAHRLSTIKAVDR  288 (325)
Q Consensus       212 ~~~--~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~-l~~l~~~~~~g~tvi~vtH~~~~~~~~d~  288 (325)
                      .++  +.+|||||||||+||||++.+|+++|||||||+||+.+++.+.+. +..+.    +++|+|++||+++.+..||+
T Consensus       541 ~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~----~~~tvilvtH~~~~~~~ad~  616 (1490)
T TIGR01271       541 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM----SNKTRILVTSKLEHLKKADK  616 (1490)
T ss_pred             cccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh----cCCeEEEEeCChHHHHhCCE
Confidence            776  368999999999999999999999999999999999999999974 56653    37899999999999988999


Q ss_pred             EEEEeCCEEEEEcChHHHhhcCHHHHHHH
Q 020527          289 IVVIDDGRIIEVGNHAELLHKGRLYAKLV  317 (325)
Q Consensus       289 v~~l~~G~i~~~g~~~~l~~~~~~~~~~~  317 (325)
                      |++|++|++++.|+++++......|.+.+
T Consensus       617 ii~l~~g~i~~~g~~~~l~~~~~~~~~~~  645 (1490)
T TIGR01271       617 ILLLHEGVCYFYGTFSELQAKRPDFSSLL  645 (1490)
T ss_pred             EEEEECCEEEEEcCHHHHHhcChHHHHHH
Confidence            99999999999999999987655565554

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.5e-48  Score=357.10  Aligned_cols=221  Identities=32%  Similarity=0.487  Sum_probs=178.5

Q ss_pred             cccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-----CCCeEEECCEeCCC--C
Q 020527           77 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--L  149 (325)
Q Consensus        77 ~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-----~~G~I~i~g~~i~~--~  149 (325)
                      +..|+++|++++|++   ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|     ++|+|.++|+++..  .
T Consensus         5 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~   81 (259)
T PRK14260          5 IPAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRI   81 (259)
T ss_pred             cceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecccccc
Confidence            346999999999974   3599999999999999999999999999999999999985     48999999998853  2


Q ss_pred             CHHHHhcceEEEccCCcCccccHHHHHhcCCCCC--CCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHH
Q 020527          150 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD--VKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK  223 (325)
Q Consensus       150 ~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~  223 (325)
                      ....+++.++|+||++.+|+.|++||+.++....  ..+    +.+.++++..++.+.+..     .......+||||||
T Consensus        82 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-----~~~~~~~~LS~G~~  156 (259)
T PRK14260         82 NINRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD-----KLNKSALGLSGGQQ  156 (259)
T ss_pred             chHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhh-----HhcCCcccCCHHHH
Confidence            3345677899999999988899999997642110  111    122334444444221111     01112357999999


Q ss_pred             HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEe-----CCEE
Q 020527          224 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID-----DGRI  297 (325)
Q Consensus       224 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~-----~G~i  297 (325)
                      ||++|||||+.+|+++||||||++||+.++..+.+.|+++++    ++|||++||+++.+.. ||++++|+     +|++
T Consensus       157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~----~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i  232 (259)
T PRK14260        157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS----ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQM  232 (259)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc----CCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceE
Confidence            999999999999999999999999999999999999999853    4799999999999865 99999998     5999


Q ss_pred             EEEcChHHHhhc
Q 020527          298 IEVGNHAELLHK  309 (325)
Q Consensus       298 ~~~g~~~~l~~~  309 (325)
                      ++.|+++++++.
T Consensus       233 ~~~~~~~~~~~~  244 (259)
T PRK14260        233 VEFGVTTQIFSN  244 (259)
T ss_pred             EEeCCHHHHhcC
Confidence            999999998754

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4e-48  Score=359.21  Aligned_cols=219  Identities=32%  Similarity=0.453  Sum_probs=176.4

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC-----CCCCeEEECCEeCCCC--CH
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTDL--DI  151 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~-----~~~G~I~i~g~~i~~~--~~  151 (325)
                      .|+++|++++|++.   .+|+|+||+|++||+++|+||||||||||+++|+|+.+     |++|+|.++|.++...  ..
T Consensus        39 ~l~~~~l~~~~~~~---~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~  115 (286)
T PRK14275         39 HVVAKNFSIYYGEF---EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE  115 (286)
T ss_pred             EEEEeeeEEEECCE---EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence            59999999999743   59999999999999999999999999999999999864     4999999999987542  22


Q ss_pred             HHHhcceEEEccCCcCccccHHHHHhcCCCC-CC-CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527          152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR  225 (325)
Q Consensus       152 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~-~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR  225 (325)
                      ..++++++|+||++.+|+.|+.||+.++... .. ..    +.+.++++..++.+.+.     .........||||||||
T Consensus       116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-----~~~~~~~~~LSgGq~qr  190 (286)
T PRK14275        116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS-----DRLDKNALGLSGGQQQR  190 (286)
T ss_pred             HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh-----hHhhCChhhCCHHHHHH
Confidence            3467889999999998877999999875211 11 11    12223333333211000     00111235799999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChH
Q 020527          226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA  304 (325)
Q Consensus       226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~  304 (325)
                      ++|||||+.+|++|||||||++||+.++..+.+.|+++.+    ++|||++|||++.+.. |||+++|++|++++.|+++
T Consensus       191 v~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~----~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~  266 (286)
T PRK14275        191 LCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG----SYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTA  266 (286)
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc----CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence            9999999999999999999999999999999999999853    4799999999999865 9999999999999999999


Q ss_pred             HHhhc
Q 020527          305 ELLHK  309 (325)
Q Consensus       305 ~l~~~  309 (325)
                      ++.+.
T Consensus       267 ~~~~~  271 (286)
T PRK14275        267 QLFTN  271 (286)
T ss_pred             HHHhC
Confidence            98764

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.6e-48  Score=357.10  Aligned_cols=219  Identities=28%  Similarity=0.491  Sum_probs=176.7

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC-----CCCCeEEECCEeCCC--CCH
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LDI  151 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~-----~~~G~I~i~g~~i~~--~~~  151 (325)
                      .|+++|++++|+++   .+|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|.++..  .+.
T Consensus        39 ~l~i~~l~~~~~~~---~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~  115 (285)
T PRK14254         39 VIEARDLNVFYGDE---QALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP  115 (285)
T ss_pred             eEEEEEEEEEECCE---eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence            59999999999743   59999999999999999999999999999999999997     689999999998753  234


Q ss_pred             HHHhcceEEEccCCcCccccHHHHHhcCCCC-CCC---HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 020527          152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DVK---NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA  227 (325)
Q Consensus       152 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~  227 (325)
                      ..++++++|+||++.+|+.|++||+.++... ...   .+++.++++..++...+..     .......+||||||||++
T Consensus       116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-----~~~~~~~~LSgGe~qrv~  190 (285)
T PRK14254        116 VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD-----QLDSSGLDLSGGQQQRLC  190 (285)
T ss_pred             HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHH-----HHhCCcccCCHHHHHHHH
Confidence            4567889999999988877999999764211 111   1223334444443211100     011123579999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEE-EEeCCEEEEEcChHH
Q 020527          228 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIV-VIDDGRIIEVGNHAE  305 (325)
Q Consensus       228 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~-~l~~G~i~~~g~~~~  305 (325)
                      |||||+.+|+||||||||++||+.++..+.+.|+++++    +.|||++|||++.+.. |||++ +|++|++++.|++++
T Consensus       191 LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~----~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~  266 (285)
T PRK14254        191 IARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE----EYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDK  266 (285)
T ss_pred             HHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc----CCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHH
Confidence            99999999999999999999999999999999999964    3699999999999865 99975 579999999999998


Q ss_pred             Hhhc
Q 020527          306 LLHK  309 (325)
Q Consensus       306 l~~~  309 (325)
                      ++.+
T Consensus       267 ~~~~  270 (285)
T PRK14254        267 IFEN  270 (285)
T ss_pred             HHhC
Confidence            8754

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-48  Score=355.60  Aligned_cols=218  Identities=33%  Similarity=0.506  Sum_probs=175.4

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC-----CCCCeEEECCEeCCCCC--HH
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTDLD--IR  152 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~-----~~~G~I~i~g~~i~~~~--~~  152 (325)
                      -+++|++++|++   .++|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|+++...+  ..
T Consensus         6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~   82 (251)
T PRK14244          6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV   82 (251)
T ss_pred             EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence            478999999964   369999999999999999999999999999999999986     47999999999875432  23


Q ss_pred             HHhcceEEEccCCcCccccHHHHHhcCCCC-CC--CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527          153 WLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV--KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR  225 (325)
Q Consensus       153 ~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~-~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR  225 (325)
                      .+++.++|+||++.+|+.|++||+.++... ..  ..    +.+.++++..++.+.+..     .......+||||||||
T Consensus        83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~~~~LS~Gq~qr  157 (251)
T PRK14244         83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGD-----RLKDSAFELSGGQQQR  157 (251)
T ss_pred             HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhh-----HhhcChhhCCHHHHHH
Confidence            457789999999998878999999865211 11  11    112233343333221100     0011235799999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChH
Q 020527          226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA  304 (325)
Q Consensus       226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~  304 (325)
                      ++|||||+.+|++|||||||++||+.++..+.+.|+++.    +++|||++|||++.+.. ||++++|++|++++.|+++
T Consensus       158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~  233 (251)
T PRK14244        158 LCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK----KNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQ  233 (251)
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHH
Confidence            999999999999999999999999999999999999984    26899999999999865 9999999999999999999


Q ss_pred             HHhhc
Q 020527          305 ELLHK  309 (325)
Q Consensus       305 ~l~~~  309 (325)
                      +++..
T Consensus       234 ~~~~~  238 (251)
T PRK14244        234 EIFKN  238 (251)
T ss_pred             HHhcC
Confidence            98764

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.4e-48  Score=353.46  Aligned_cols=219  Identities=28%  Similarity=0.436  Sum_probs=176.9

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-----CCCeEEECCEeCCCC--CH
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDL--DI  151 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-----~~G~I~i~g~~i~~~--~~  151 (325)
                      .|+++|++++|+++   .+|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|+++...  +.
T Consensus         6 ~i~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~   82 (253)
T PRK14261          6 ILSTKNLNLWYGEK---HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV   82 (253)
T ss_pred             eEEEeeeEEEECCe---eeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence            58999999999743   599999999999999999999999999999999999763     489999999998654  33


Q ss_pred             HHHhcceEEEccCCcCccccHHHHHhcCCCC-CC-CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527          152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR  225 (325)
Q Consensus       152 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~-~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR  225 (325)
                      ...++.++|+||++.+|+.||+||+.++... .. ..    +.+.++++..++.+.+..     ........||||||||
T Consensus        83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-----~~~~~~~~LS~G~~qr  157 (253)
T PRK14261         83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKD-----RLHDSALSLSGGQQQR  157 (253)
T ss_pred             hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHH-----HhhcChhhCCHHHHHH
Confidence            4567789999999998878999999875321 10 11    112223333332211110     0111235799999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChH
Q 020527          226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA  304 (325)
Q Consensus       226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~  304 (325)
                      ++|||||+.+|+++||||||++||+.+++.+.+.|+++.+    ++|+|++||+++.+. .||++++|++|++++.|+++
T Consensus       158 v~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~----~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~  233 (253)
T PRK14261        158 LCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK----EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTT  233 (253)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh----CceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHH
Confidence            9999999999999999999999999999999999999853    479999999999986 59999999999999999999


Q ss_pred             HHhhc
Q 020527          305 ELLHK  309 (325)
Q Consensus       305 ~l~~~  309 (325)
                      ++...
T Consensus       234 ~~~~~  238 (253)
T PRK14261        234 QIFEN  238 (253)
T ss_pred             HHHhC
Confidence            98754

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=100.00  E-value=2.8e-48  Score=346.99  Aligned_cols=207  Identities=30%  Similarity=0.470  Sum_probs=171.8

Q ss_pred             EEEEEEEEECCCCC-CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHH---HHh
Q 020527           80 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLR  155 (325)
Q Consensus        80 i~~~~v~~~y~~~~-~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~---~~r  155 (325)
                      ++++|+++.|+.+. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..   ..+
T Consensus         2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (220)
T TIGR02982         2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR   81 (220)
T ss_pred             EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence            68999999996421 14699999999999999999999999999999999999999999999999988655432   356


Q ss_pred             cceEEEccCCcCcc-ccHHHHHhcCCCC--CCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 020527          156 EKIGFVGQEPQLLQ-MDIKSNIMYGCPK--DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI  228 (325)
Q Consensus       156 ~~i~~v~Q~~~l~~-~tv~enl~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i  228 (325)
                      +.++|+||++.+|. .|+.||+.++...  ....    +.+.++++..++.+..++.+         .+||+|||||++|
T Consensus        82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~lS~G~~qrv~l  152 (220)
T TIGR02982        82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP---------HNLSGGQKQRVAI  152 (220)
T ss_pred             hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh---------hhCCHHHHHHHHH
Confidence            78999999999885 7999999764211  1111    12344455555544444433         5799999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEE
Q 020527          229 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI  297 (325)
Q Consensus       229 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i  297 (325)
                      ||||+.+|+++||||||++||+.++..+.+.|+++.++  .++|+|++||+++....||+|++|++|++
T Consensus       153 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sh~~~~~~~~d~v~~l~~g~~  219 (220)
T TIGR02982       153 ARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLARE--QGCTILIVTHDNRILDVADRIVHMEDGKL  219 (220)
T ss_pred             HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence            99999999999999999999999999999999998753  47899999999997667999999999986

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.4e-48  Score=356.50  Aligned_cols=219  Identities=31%  Similarity=0.509  Sum_probs=178.1

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-----CCCeEEECCEeCCC--CCH
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--LDI  151 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-----~~G~I~i~g~~i~~--~~~  151 (325)
                      .|+++|++++|+++   .+|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++..  .+.
T Consensus        25 ~l~~~nl~~~~~~~---~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~  101 (272)
T PRK14236         25 ALEVRNLNLFYGDK---QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV  101 (272)
T ss_pred             EEEEEEEEEEECCe---eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence            59999999999643   599999999999999999999999999999999999874     89999999999864  233


Q ss_pred             HHHhcceEEEccCCcCccccHHHHHhcCCC-CCC-CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527          152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDV-KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR  225 (325)
Q Consensus       152 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~-~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR  225 (325)
                      ..+++.++|+||++.+|+.|++||+.++.. ... ..    +.+.++++..++.+.+..     .......+||||||||
T Consensus       102 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~~~~LS~Gq~qr  176 (272)
T PRK14236        102 AELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKD-----RLHENAFGLSGGQQQR  176 (272)
T ss_pred             HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHH-----HhhCCcccCCHHHHHH
Confidence            456788999999999887799999976421 111 11    123333444443221110     0011235799999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChH
Q 020527          226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA  304 (325)
Q Consensus       226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~  304 (325)
                      ++|||||+.+|+++||||||++||+.++..+.+.|+++++    +.|+|++||+++.+. .||++++|++|++++.|+++
T Consensus       177 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~----~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~  252 (272)
T PRK14236        177 LVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS----KYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD  252 (272)
T ss_pred             HHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh----CCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence            9999999999999999999999999999999999999853    579999999999986 49999999999999999999


Q ss_pred             HHhhc
Q 020527          305 ELLHK  309 (325)
Q Consensus       305 ~l~~~  309 (325)
                      ++...
T Consensus       253 ~~~~~  257 (272)
T PRK14236        253 TLFTS  257 (272)
T ss_pred             HHhcC
Confidence            98754

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4e-48  Score=354.73  Aligned_cols=221  Identities=29%  Similarity=0.482  Sum_probs=179.3

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCC-----CCeEEECCEeCCC--CCH
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-----DGQIYIDGFPLTD--LDI  151 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~-----~G~I~i~g~~i~~--~~~  151 (325)
                      .|+++|++++|++.   .+|+|+||+|++||+++|+||||||||||+++|+|+++|+     +|+|.++|+++..  .+.
T Consensus         7 ~l~~~nl~~~~~~~---~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~   83 (261)
T PRK14258          7 AIKVNNLSFYYDTQ---KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL   83 (261)
T ss_pred             eEEEeeEEEEeCCe---eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence            58999999999643   5999999999999999999999999999999999999985     8999999998742  233


Q ss_pred             HHHhcceEEEccCCcCccccHHHHHhcCCCC-CC-CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527          152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR  225 (325)
Q Consensus       152 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~-~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR  225 (325)
                      ..+++.++|+||++.+|+.|++||+.++... .. ..    +.+.++++..++.+.+..     .......+||||||||
T Consensus        84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~~~~LSgGq~qr  158 (261)
T PRK14258         84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKH-----KIHKSALDLSGGQQQR  158 (261)
T ss_pred             HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhh-----HhcCCcccCCHHHHHH
Confidence            4567889999999988889999999764210 00 11    122334444443221111     0111235799999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeC-----CEEEE
Q 020527          226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD-----GRIIE  299 (325)
Q Consensus       226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~-----G~i~~  299 (325)
                      ++|||||+.+|++|||||||++||+.++..+.+.|++++++  .+.|+|++|||++.+.. ||+|++|++     |++++
T Consensus       159 v~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~--~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~  236 (261)
T PRK14258        159 LCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLR--SELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE  236 (261)
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEE
Confidence            99999999999999999999999999999999999998642  37899999999999865 999999999     99999


Q ss_pred             EcChHHHhhc
Q 020527          300 VGNHAELLHK  309 (325)
Q Consensus       300 ~g~~~~l~~~  309 (325)
                      .|+++++++.
T Consensus       237 ~~~~~~~~~~  246 (261)
T PRK14258        237 FGLTKKIFNS  246 (261)
T ss_pred             eCCHHHHHhC
Confidence            9999999765

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=100.00  E-value=4.6e-48  Score=341.69  Aligned_cols=199  Identities=35%  Similarity=0.512  Sum_probs=170.7

Q ss_pred             EEEEEEEEECCCCCC--CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 020527           80 VQFVNISFHYPSRPT--VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK  157 (325)
Q Consensus        80 i~~~~v~~~y~~~~~--~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~  157 (325)
                      ++++||+++|+++..  +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|             +
T Consensus         1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~   67 (204)
T cd03250           1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S   67 (204)
T ss_pred             CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence            478999999975310  2699999999999999999999999999999999999999999999998             5


Q ss_pred             eEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCC
Q 020527          158 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRD  235 (325)
Q Consensus       158 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~  235 (325)
                      |+|+||++.+|+.|++||+.++..  ...+....+.+..++.+.+...+.++.+...  ..+||+|||||++|||||+.+
T Consensus        68 i~~~~q~~~l~~~t~~enl~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~  145 (204)
T cd03250          68 IAYVSQEPWIQNGTIRENILFGKP--FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSD  145 (204)
T ss_pred             EEEEecCchhccCcHHHHhccCCC--cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence            999999999999999999988632  2234455666677788888888776655443  467999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHH-HHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCE
Q 020527          236 PAILLLDEATSALDSESEHYVKG-VLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR  296 (325)
Q Consensus       236 p~llllDEPts~LD~~~~~~i~~-~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~  296 (325)
                      |+++||||||++||+.+.+.+.+ +++++.+   +|.|||++||+++.+..||++++|++|+
T Consensus       146 p~llllDEP~~~LD~~~~~~l~~~ll~~~~~---~~~tvi~~sh~~~~~~~~d~i~~l~~G~  204 (204)
T cd03250         146 ADIYLLDDPLSAVDAHVGRHIFENCILGLLL---NNKTRILVTHQLQLLPHADQIVVLDNGR  204 (204)
T ss_pred             CCEEEEeCccccCCHHHHHHHHHHHHHHhcc---CCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence            99999999999999999998888 4565543   3789999999999887799999999984

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.7e-48  Score=354.90  Aligned_cols=219  Identities=27%  Similarity=0.413  Sum_probs=177.2

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-----CCCeEEECCEeCCCC--CH
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDL--DI  151 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-----~~G~I~i~g~~i~~~--~~  151 (325)
                      .|+++|++++|+++   .+|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|+++...  ..
T Consensus        20 ~l~~~nl~~~~~~~---~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~   96 (274)
T PRK14265         20 VFEVEGVKVFYGGF---LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS   96 (274)
T ss_pred             eEEEeeEEEEeCCe---EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence            59999999999753   599999999999999999999999999999999999863     699999999988532  23


Q ss_pred             HHHhcceEEEccCCcCccccHHHHHhcCCCCC-C---CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 020527          152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD-V---KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA  227 (325)
Q Consensus       152 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~  227 (325)
                      ..++++|+|+||++.+|+.|++||+.++.... .   .++.+...++.+++.+.+..     .......+|||||||||+
T Consensus        97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-----~~~~~~~~LSgGq~qrv~  171 (274)
T PRK14265         97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD-----KLKEKGTALSGGQQQRLC  171 (274)
T ss_pred             HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH-----HhcCCcccCCHHHHHHHH
Confidence            45678899999999988779999998752111 1   01122333344333221111     011123579999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEe---------CCEE
Q 020527          228 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID---------DGRI  297 (325)
Q Consensus       228 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~---------~G~i  297 (325)
                      |||||+.+|++|||||||++||+.++..+.+.|.++++    +.|||++|||++.+.. |||+++|+         +|++
T Consensus       172 LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~----~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~  247 (274)
T PRK14265        172 IARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE----QYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKL  247 (274)
T ss_pred             HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc----CCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceE
Confidence            99999999999999999999999999999999999853    5799999999999865 99999998         8999


Q ss_pred             EEEcChHHHhhc
Q 020527          298 IEVGNHAELLHK  309 (325)
Q Consensus       298 ~~~g~~~~l~~~  309 (325)
                      ++.|++++++.+
T Consensus       248 ~~~g~~~~~~~~  259 (274)
T PRK14265        248 VEFSPTEQMFGS  259 (274)
T ss_pred             EEeCCHHHHHhC
Confidence            999999998764

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.6e-48  Score=356.49  Aligned_cols=219  Identities=27%  Similarity=0.480  Sum_probs=178.3

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-----CCCeEEECCEeCCCCC-HH
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDLD-IR  152 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-----~~G~I~i~g~~i~~~~-~~  152 (325)
                      .|+++||+++|+++   ++|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++...+ ..
T Consensus        21 ~l~i~nl~~~~~~~---~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~   97 (276)
T PRK14271         21 AMAAVNLTLGFAGK---TVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL   97 (276)
T ss_pred             EEEEeeEEEEECCE---EEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence            58999999999753   699999999999999999999999999999999999986     7999999999886543 34


Q ss_pred             HHhcceEEEccCCcCccccHHHHHhcCCCC--CCCHHHH----HHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHH
Q 020527          153 WLREKIGFVGQEPQLLQMDIKSNIMYGCPK--DVKNEDI----EWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI  226 (325)
Q Consensus       153 ~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv  226 (325)
                      .+++.++|+||++.+|+.|++||+.++...  .......    .+.++..++...+..     .......+||||||||+
T Consensus        98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~l~~~~~~LSgGq~qrl  172 (276)
T PRK14271         98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKD-----RLSDSPFRLSGGQQQLL  172 (276)
T ss_pred             HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhh-----HhhCCcccCCHHHHHHH
Confidence            567889999999998889999999875211  1122221    122233333211100     00112357999999999


Q ss_pred             HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHH
Q 020527          227 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAE  305 (325)
Q Consensus       227 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~  305 (325)
                      +|||||+.+|++|||||||++||+.+++.+.+.|+++.+    +.|||++||+++.+.. |||+++|++|++++.|++++
T Consensus       173 ~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~----~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~  248 (276)
T PRK14271        173 CLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD----RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQ  248 (276)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc----CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            999999999999999999999999999999999999853    3699999999998865 99999999999999999999


Q ss_pred             Hhhc
Q 020527          306 LLHK  309 (325)
Q Consensus       306 l~~~  309 (325)
                      +.+.
T Consensus       249 ~~~~  252 (276)
T PRK14271        249 LFSS  252 (276)
T ss_pred             HHhC
Confidence            8765

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=100.00  E-value=5e-48  Score=349.26  Aligned_cols=214  Identities=31%  Similarity=0.500  Sum_probs=178.3

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      ++++|++++|+++   ++|+|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...+  ..++.++
T Consensus         1 i~i~~l~~~~~~~---~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~--~~~~~i~   75 (237)
T TIGR00968         1 IEIANISKRFGSF---QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVH--ARDRKIG   75 (237)
T ss_pred             CEEEEEEEEECCe---eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC--hhhcCEE
Confidence            4789999999753   5999999999999999999999999999999999999999999999999886543  2367899


Q ss_pred             EEccCCcCcc-ccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 020527          160 FVGQEPQLLQ-MDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL  233 (325)
Q Consensus       160 ~v~Q~~~l~~-~tv~enl~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~  233 (325)
                      |+||++.+|+ .|+.||+.+.... ...    .+.+.++++..++.++.++.         ..+||+||+||++|||||+
T Consensus        76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~lS~G~~qrl~laral~  146 (237)
T TIGR00968        76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRY---------PNQLSGGQRQRVALARALA  146 (237)
T ss_pred             EEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC---------hhhCCHHHHHHHHHHHHHh
Confidence            9999999885 6999999865321 111    11223344444444333332         2579999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhc
Q 020527          234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK  309 (325)
Q Consensus       234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~  309 (325)
                      .+|+++||||||++||+.+++.+.+.|.+++++  .++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus       147 ~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~--~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~  221 (237)
T TIGR00968       147 VEPQVLLLDEPFGALDAKVRKELRSWLRKLHDE--VHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH  221 (237)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence            999999999999999999999999999998642  37899999999998865 999999999999999999988754

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=100.00  E-value=2.5e-48  Score=345.80  Aligned_cols=204  Identities=31%  Similarity=0.491  Sum_probs=166.5

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCC----HHHHh
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRWLR  155 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~----~~~~r  155 (325)
                      +++ ||+|+|+++   .+  |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++....    ....+
T Consensus         2 ~~~-~l~~~~~~~---~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~   74 (214)
T cd03297           2 LCV-DIEKRLPDF---TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ   74 (214)
T ss_pred             cee-eeeEecCCe---ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHh
Confidence            345 999999763   34  99999999 999999999999999999999999999999999999875321    23456


Q ss_pred             cceEEEccCCcCc-cccHHHHHhcCCCCCC---CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 020527          156 EKIGFVGQEPQLL-QMDIKSNIMYGCPKDV---KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA  231 (325)
Q Consensus       156 ~~i~~v~Q~~~l~-~~tv~enl~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra  231 (325)
                      +.++|+||++.+| ..|++||+.++.....   ..+++.+.++..++.+..++.         ..+||||||||++||||
T Consensus        75 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~qrv~la~a  145 (214)
T cd03297          75 RKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRY---------PAQLSGGEKQRVALARA  145 (214)
T ss_pred             hcEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcC---------cccCCHHHHHHHHHHHH
Confidence            7899999999888 5799999986522111   112233344444444433332         36799999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEc
Q 020527          232 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVG  301 (325)
Q Consensus       232 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g  301 (325)
                      |+.+|+++||||||++||+.+++.+.+.+++++++  .|+|+|++|||++.+. .||++++|++|++++.|
T Consensus       146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g  214 (214)
T cd03297         146 LAAQPELLLLDEPFSALDRALRLQLLPELKQIKKN--LNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG  214 (214)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH--cCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence            99999999999999999999999999999998653  3789999999999986 49999999999998764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.9e-48  Score=351.56  Aligned_cols=219  Identities=27%  Similarity=0.449  Sum_probs=175.6

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCC-----CCeEEECCEeCCC--CCH
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-----DGQIYIDGFPLTD--LDI  151 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~-----~G~I~i~g~~i~~--~~~  151 (325)
                      .++++|++++|++   +++|+|+||+|++||+++|+||||||||||+++|+|+++|+     +|+|.++|.++..  ...
T Consensus         4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~   80 (252)
T PRK14272          4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP   80 (252)
T ss_pred             EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence            4899999999974   36999999999999999999999999999999999999874     8999999998864  233


Q ss_pred             HHHhcceEEEccCCcCcc-ccHHHHHhcCCC-CCC-CHHHHHH----HHHHcCHHHHHHhCCCCcccccCCCCCChHHHH
Q 020527          152 RWLREKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDV-KNEDIEW----AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ  224 (325)
Q Consensus       152 ~~~r~~i~~v~Q~~~l~~-~tv~enl~~~~~-~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~Q  224 (325)
                      ..+++.++|+||++.+|+ .|++||+.++.. ... ..+...+    .++..++...+..   .  ......+|||||||
T Consensus        81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~---~--~~~~~~~LS~G~~q  155 (252)
T PRK14272         81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKD---R--LKTPATGLSGGQQQ  155 (252)
T ss_pred             HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhh---h--hcCCcccCCHHHHH
Confidence            456778999999998885 799999976421 111 1221111    1222222111100   0  01223679999999


Q ss_pred             HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcCh
Q 020527          225 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH  303 (325)
Q Consensus       225 Rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~  303 (325)
                      |++|||||+.+|++|||||||++||+.++..+.+.|+++++    ++|+|++||+++.+.. |||+++|++|++++.|++
T Consensus       156 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~----~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~  231 (252)
T PRK14272        156 RLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK----VTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPT  231 (252)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc----CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence            99999999999999999999999999999999999999852    5799999999999875 999999999999999999


Q ss_pred             HHHhhc
Q 020527          304 AELLHK  309 (325)
Q Consensus       304 ~~l~~~  309 (325)
                      ++++..
T Consensus       232 ~~~~~~  237 (252)
T PRK14272        232 DQLFTN  237 (252)
T ss_pred             HHHHhC
Confidence            998764

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=100.00  E-value=3.8e-48  Score=386.02  Aligned_cols=215  Identities=28%  Similarity=0.412  Sum_probs=179.3

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHH-hcc
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REK  157 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~-r~~  157 (325)
                      .|+++|++++|+++   .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+...+ ++.
T Consensus        11 ~l~~~~l~~~~~~~---~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~   87 (510)
T PRK15439         11 LLCARSISKQYSGV---EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG   87 (510)
T ss_pred             eEEEEeEEEEeCCc---eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence            59999999999753   59999999999999999999999999999999999999999999999999876655444 357


Q ss_pred             eEEEccCCcCc-cccHHHHHhcCCCCCC-CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 020527          158 IGFVGQEPQLL-QMDIKSNIMYGCPKDV-KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD  235 (325)
Q Consensus       158 i~~v~Q~~~l~-~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~  235 (325)
                      ++|+||++.++ ..||+||+.++..... ..+.+.++++..++.+.         ......+|||||||||+|||||+.+
T Consensus        88 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~---------~~~~~~~LSgG~~qrv~la~aL~~~  158 (510)
T PRK15439         88 IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLD---------LDSSAGSLEVADRQIVEILRGLMRD  158 (510)
T ss_pred             EEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCcc---------ccCChhhCCHHHHHHHHHHHHHHcC
Confidence            99999999887 5799999988632110 01222333333333222         2222367999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527          236 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH  308 (325)
Q Consensus       236 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~  308 (325)
                      |++|||||||++||+.++..+.+.|+++++   +|+|||++|||++.+.. ||++++|++|++++.|+++++..
T Consensus       159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  229 (510)
T PRK15439        159 SRILILDEPTASLTPAETERLFSRIRELLA---QGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST  229 (510)
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence            999999999999999999999999999864   37899999999999865 99999999999999999988754

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.3e-48  Score=351.04  Aligned_cols=219  Identities=30%  Similarity=0.492  Sum_probs=175.6

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC--C---CCCeEEECCEeCCCC--CH
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--P---SDGQIYIDGFPLTDL--DI  151 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~--~---~~G~I~i~g~~i~~~--~~  151 (325)
                      +|+++||+++|+.   +.+|+|+||+|++||+++|+||||||||||+++|+|+++  |   ++|+|.++|+++...  ..
T Consensus         5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~   81 (252)
T PRK14255          5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV   81 (252)
T ss_pred             eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence            4899999999974   369999999999999999999999999999999999975  4   599999999988532  23


Q ss_pred             HHHhcceEEEccCCcCccccHHHHHhcCCC-CC-CCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527          152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KD-VKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR  225 (325)
Q Consensus       152 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~-~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR  225 (325)
                      ..+++.++|+||++.+|+.|+++|+.++.. .. ...    +.+...++..++...+..     .......+||||||||
T Consensus        82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-----~~~~~~~~LS~Gq~qr  156 (252)
T PRK14255         82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKD-----HLHESALSLSGGQQQR  156 (252)
T ss_pred             HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhh-----HHhcCcccCCHHHHHH
Confidence            455778999999998888899999986421 11 111    112222333322111100     0111236799999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChH
Q 020527          226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA  304 (325)
Q Consensus       226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~  304 (325)
                      ++|||||+.+|+++||||||++||+.++..+.+.|+++.+    +.|+|++||+++.+.. ||+|++|++|++++.|++.
T Consensus       157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~----~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~  232 (252)
T PRK14255        157 VCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD----QYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTK  232 (252)
T ss_pred             HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh----CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence            9999999999999999999999999999999999999853    4699999999999864 9999999999999999999


Q ss_pred             HHhhc
Q 020527          305 ELLHK  309 (325)
Q Consensus       305 ~l~~~  309 (325)
                      +++.+
T Consensus       233 ~~~~~  237 (252)
T PRK14255        233 QMFLN  237 (252)
T ss_pred             HHhcC
Confidence            98765

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=100.00  E-value=9.8e-48  Score=350.40  Aligned_cols=221  Identities=27%  Similarity=0.376  Sum_probs=175.3

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEe-----CCCCCHHH
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP-----LTDLDIRW  153 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~-----i~~~~~~~  153 (325)
                      .|+++||+++|++.   .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+     +...+...
T Consensus         3 ~l~~~~l~~~~~~~---~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   79 (253)
T TIGR02323         3 LLQVSGLSKSYGGG---KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE   79 (253)
T ss_pred             eEEEeeeEEEeCCc---eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence            48999999999753   58999999999999999999999999999999999999999999999987     65544432


Q ss_pred             ----HhcceEEEccCCcC--c-cccHHHHHhcCC--CCCCCHHHHHHHHHHcCHHHHHHhCCCCc-ccccCCCCCChHHH
Q 020527          154 ----LREKIGFVGQEPQL--L-QMDIKSNIMYGC--PKDVKNEDIEWAAKQAYVHEFILSLPCGY-ETLVDDDLLSGGQK  223 (325)
Q Consensus       154 ----~r~~i~~v~Q~~~l--~-~~tv~enl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~LSgGq~  223 (325)
                          +++.++|+||++..  + ..|+.+|+.+..  .........     ...+.++++.++... ........||||||
T Consensus        80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~  154 (253)
T TIGR02323        80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEVEIDPTRIDDLPRAFSGGMQ  154 (253)
T ss_pred             HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHcCCChhhhhcCchhcCHHHH
Confidence                24579999999853  2 468888885421  000001010     112334455444321 11222367999999


Q ss_pred             HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcC
Q 020527          224 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN  302 (325)
Q Consensus       224 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~  302 (325)
                      |||+|||||+.+|++|||||||++||+.+++.+.+.|+++.++  .|.|+|++||+++.+.. ||++++|++|++++.|+
T Consensus       155 qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~  232 (253)
T TIGR02323       155 QRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRD--LGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGL  232 (253)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECC
Confidence            9999999999999999999999999999999999999988642  47899999999999875 99999999999999999


Q ss_pred             hHHHhhc
Q 020527          303 HAELLHK  309 (325)
Q Consensus       303 ~~~l~~~  309 (325)
                      ++++.+.
T Consensus       233 ~~~~~~~  239 (253)
T TIGR02323       233 TDQVLDD  239 (253)
T ss_pred             HHHHhcC
Confidence            9988754

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-47  Score=349.53  Aligned_cols=220  Identities=32%  Similarity=0.491  Sum_probs=179.3

Q ss_pred             ccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC-----CCCCeEEECCEeCCCC--C
Q 020527           78 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTDL--D  150 (325)
Q Consensus        78 ~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~-----~~~G~I~i~g~~i~~~--~  150 (325)
                      ..++++||++.|++   +++|+|+||+|++||+++|+||||||||||+++|+|+.+     |++|+|.++|.++...  +
T Consensus         2 ~~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~   78 (250)
T PRK14266          2 YRIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVD   78 (250)
T ss_pred             cEEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccccccc
Confidence            45899999999974   359999999999999999999999999999999999864     4899999999988642  3


Q ss_pred             HHHHhcceEEEccCCcCccccHHHHHhcCCC-CC-CCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHH
Q 020527          151 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KD-VKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ  224 (325)
Q Consensus       151 ~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~-~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~Q  224 (325)
                      ...++++++|+||++.+|+.|++||+.++.. .. ...    +.+.++++..++.+.+...     .......|||||||
T Consensus        79 ~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-----~~~~~~~LS~Gq~q  153 (250)
T PRK14266         79 VVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK-----LDKSALGLSGGQQQ  153 (250)
T ss_pred             HHHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH-----HhCCcccCCHHHHH
Confidence            4456788999999999888899999986521 11 111    2233344554543322111     01123579999999


Q ss_pred             HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcCh
Q 020527          225 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH  303 (325)
Q Consensus       225 Rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~  303 (325)
                      |++|||||+.+|++|||||||++||+.++..+.+.|+++++    +.|||++||+++.+.. ||++++|++|++++.|++
T Consensus       154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~----~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~  229 (250)
T PRK14266        154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE----DYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLT  229 (250)
T ss_pred             HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc----CCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCH
Confidence            99999999999999999999999999999999999999852    6799999999998865 999999999999999999


Q ss_pred             HHHhhc
Q 020527          304 AELLHK  309 (325)
Q Consensus       304 ~~l~~~  309 (325)
                      +++...
T Consensus       230 ~~~~~~  235 (250)
T PRK14266        230 DQIFIN  235 (250)
T ss_pred             HHHHhC
Confidence            998654

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.3e-48  Score=354.68  Aligned_cols=212  Identities=25%  Similarity=0.412  Sum_probs=172.8

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .|+++||+++|+++  +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..   ...++.+
T Consensus         6 ~l~~~~l~~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i   80 (272)
T PRK15056          6 GIVVNDVTVTWRNG--HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLV   80 (272)
T ss_pred             eEEEEeEEEEecCC--cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceE
Confidence            48999999999632  369999999999999999999999999999999999999999999999998742   1123469


Q ss_pred             EEEccCCcC---ccccHHHHHhcCCCC------CC---CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHH
Q 020527          159 GFVGQEPQL---LQMDIKSNIMYGCPK------DV---KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI  226 (325)
Q Consensus       159 ~~v~Q~~~l---~~~tv~enl~~~~~~------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv  226 (325)
                      +|+||++.+   +..++++|+.++...      ..   ..+.+.++++..++.+..++.         ..+||||||||+
T Consensus        81 ~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~---------~~~LSgG~~qrv  151 (272)
T PRK15056         81 AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQ---------IGELSGGQKKRV  151 (272)
T ss_pred             EEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCC---------cccCCHHHHHHH
Confidence            999999865   245789998653210      00   112233445555555444332         257999999999


Q ss_pred             HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHH
Q 020527          227 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAE  305 (325)
Q Consensus       227 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~  305 (325)
                      +|||||+.+|++|||||||++||+.+++.+.+.|.++++   +|+|||++|||++.+. .||+++++ +|++++.|++++
T Consensus       152 ~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~---~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~  227 (272)
T PRK15056        152 FLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRD---EGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTET  227 (272)
T ss_pred             HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHh
Confidence            999999999999999999999999999999999999864   3789999999999885 59999777 899999999998


Q ss_pred             Hhh
Q 020527          306 LLH  308 (325)
Q Consensus       306 l~~  308 (325)
                      +++
T Consensus       228 ~~~  230 (272)
T PRK15056        228 TFT  230 (272)
T ss_pred             ccC
Confidence            764

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=3.3e-47  Score=402.06  Aligned_cols=295  Identities=26%  Similarity=0.392  Sum_probs=253.0

Q ss_pred             ehHHH-HhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEEEE
Q 020527            5 LGGMS-IMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFV   83 (325)
Q Consensus         5 ~g~~~-v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   83 (325)
                      +++|. ...+.+|....++.+.++..+-.|+..+...+....++.++.+|+.+++..++.................++++
T Consensus       443 F~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~i~i~  522 (1381)
T KOG0054|consen  443 FVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENAIEIK  522 (1381)
T ss_pred             HHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCceEEEe
Confidence            34444 44567788788888888999999999999999999999999999999998765432211100111122359999


Q ss_pred             EEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEcc
Q 020527           84 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQ  163 (325)
Q Consensus        84 ~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q  163 (325)
                      |.+++++.....+.|+||||+|++|+.+||+||-|||||+||.+|+|.++..+|+|.++|.             ++|+||
T Consensus       523 ~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs-------------iaYv~Q  589 (1381)
T KOG0054|consen  523 NGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS-------------VAYVPQ  589 (1381)
T ss_pred             eeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe-------------EEEecc
Confidence            9999997633345999999999999999999999999999999999999999999999984             999999


Q ss_pred             CCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEE
Q 020527          164 EPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLL  241 (325)
Q Consensus       164 ~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~llll  241 (325)
                      .|.++++||+|||.||.+  .++++.+++.+.+.+++.++.+|.|..|.+++  -+|||||||||+||||+.++++|+||
T Consensus       590 ~pWI~ngTvreNILFG~~--~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLL  667 (1381)
T KOG0054|consen  590 QPWIQNGTVRENILFGSP--YDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLL  667 (1381)
T ss_pred             ccHhhCCcHHHhhhcCcc--ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEE
Confidence            999999999999999953  55778889999999999999999999999986  58999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHH-HHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHH
Q 020527          242 DEATSALDSESEHYVKGVL-HALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK  318 (325)
Q Consensus       242 DEPts~LD~~~~~~i~~~l-~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~  318 (325)
                      |.|+|++|....+.+++-. +.+    -+++|+|+|||.++.+..||.|++|++|+|.+.|+++++++....+.++..
T Consensus       668 DDplSAVDahvg~~if~~ci~~~----L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~~~l~~  741 (1381)
T KOG0054|consen  668 DDPLSAVDAHVGKHIFEECIRGL----LRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDFAELAH  741 (1381)
T ss_pred             cCcchhhhHhhhHHHHHHHHHhh----hcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcchhHHHHhh
Confidence            9999999999888877654 333    257899999999999999999999999999999999999987777777643

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.3e-48  Score=391.92  Aligned_cols=226  Identities=30%  Similarity=0.467  Sum_probs=184.2

Q ss_pred             cEEEEEEEEECCCC--------CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCC
Q 020527           79 HVQFVNISFHYPSR--------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD  150 (325)
Q Consensus        79 ~i~~~~v~~~y~~~--------~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~  150 (325)
                      .|+++||++.|+..        ....+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+
T Consensus       313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~  392 (623)
T PRK10261        313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS  392 (623)
T ss_pred             eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence            59999999999621        0135999999999999999999999999999999999999999999999999987654


Q ss_pred             HH---HHhcceEEEccCC--cCc-cccHHHHHhcCCC--CCCCH----HHHHHHHHHcCHH-HHHHhCCCCcccccCCCC
Q 020527          151 IR---WLREKIGFVGQEP--QLL-QMDIKSNIMYGCP--KDVKN----EDIEWAAKQAYVH-EFILSLPCGYETLVDDDL  217 (325)
Q Consensus       151 ~~---~~r~~i~~v~Q~~--~l~-~~tv~enl~~~~~--~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  217 (325)
                      ..   .++++|+|+||++  .++ ..||.+|+.++..  .....    +++.+.++.+++. +..++.+         .+
T Consensus       393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~---------~~  463 (623)
T PRK10261        393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYP---------HE  463 (623)
T ss_pred             HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCc---------cc
Confidence            32   3567899999998  366 5799999976421  10111    2333445555552 3333333         67


Q ss_pred             CChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCE
Q 020527          218 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR  296 (325)
Q Consensus       218 LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~  296 (325)
                      |||||||||+|||||+.+|++|||||||++||+.++.++.++|++++++  .|.|||+||||++.+.. ||||++|++|+
T Consensus       464 LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~--~g~tvi~isHdl~~v~~~~dri~vl~~G~  541 (623)
T PRK10261        464 FSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRD--FGIAYLFISHDMAVVERISHRVAVMYLGQ  541 (623)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence            9999999999999999999999999999999999999999999999753  47899999999999865 99999999999


Q ss_pred             EEEEcChHHHhhc-CHHHHH
Q 020527          297 IIEVGNHAELLHK-GRLYAK  315 (325)
Q Consensus       297 i~~~g~~~~l~~~-~~~~~~  315 (325)
                      +++.|++++++.+ ...|.+
T Consensus       542 iv~~g~~~~i~~~p~~~~~~  561 (623)
T PRK10261        542 IVEIGPRRAVFENPQHPYTR  561 (623)
T ss_pred             EEEecCHHHHhcCCCCHHHH
Confidence            9999999999864 333433

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=100.00  E-value=1.6e-47  Score=349.32  Aligned_cols=224  Identities=24%  Similarity=0.400  Sum_probs=177.7

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC----CCCeEEECCEeCCCCCHHHH
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP----SDGQIYIDGFPLTDLDIRWL  154 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~----~~G~I~i~g~~i~~~~~~~~  154 (325)
                      .|+++|++++| +   +++|+|+||+|++||+++|+||||||||||+++|+|+++|    ++|+|+++|+++...  ...
T Consensus         4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~   77 (254)
T PRK10418          4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR   77 (254)
T ss_pred             EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence            48999999999 3   2599999999999999999999999999999999999999    999999999988532  222


Q ss_pred             hcceEEEccCCc-Cc--cccHHHHHhcCC---CCCCCHHHHHHHHHHcCHHH---HHHhCCCCcccccCCCCCChHHHHH
Q 020527          155 REKIGFVGQEPQ-LL--QMDIKSNIMYGC---PKDVKNEDIEWAAKQAYVHE---FILSLPCGYETLVDDDLLSGGQKQR  225 (325)
Q Consensus       155 r~~i~~v~Q~~~-l~--~~tv~enl~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~LSgGq~QR  225 (325)
                      ++.++|+||++. .|  ..|+.+|+.+..   ......+.+.+.++.+++.+   .+++         ...+||||||||
T Consensus        78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~~LS~Gq~qr  148 (254)
T PRK10418         78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKL---------YPFEMSGGMLQR  148 (254)
T ss_pred             cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhc---------CCcccCHHHHHH
Confidence            467999999985 34  368888875421   11111223344444444432   1111         235799999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChH
Q 020527          226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA  304 (325)
Q Consensus       226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~  304 (325)
                      ++|||||+.+|++|||||||++||+.++..+.+.|+++.++  .|.|||++||+++.+. .||++++|++|++++.|+++
T Consensus       149 v~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~--~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~  226 (254)
T PRK10418        149 MMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQK--RALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVE  226 (254)
T ss_pred             HHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHh--cCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence            99999999999999999999999999999999999998653  4789999999999986 59999999999999999999


Q ss_pred             HHhhcC--HHHHHHHHH
Q 020527          305 ELLHKG--RLYAKLVKR  319 (325)
Q Consensus       305 ~l~~~~--~~~~~~~~~  319 (325)
                      ++.+..  ...+.++..
T Consensus       227 ~~~~~~~~~~~~~~~~~  243 (254)
T PRK10418        227 TLFNAPKHAVTRSLVSA  243 (254)
T ss_pred             HHhhCCCCHHHHHHHHh
Confidence            987643  234444443

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=4.9e-48  Score=384.56  Aligned_cols=218  Identities=27%  Similarity=0.390  Sum_probs=179.4

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHH-Hhcc
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK  157 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~-~r~~  157 (325)
                      .|+++|++++|++   .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+... .+++
T Consensus         4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~   80 (501)
T PRK10762          4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG   80 (501)
T ss_pred             eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence            4899999999974   35999999999999999999999999999999999999999999999999986544433 3567


Q ss_pred             eEEEccCCcCc-cccHHHHHhcCCCCC-----CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 020527          158 IGFVGQEPQLL-QMDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA  231 (325)
Q Consensus       158 i~~v~Q~~~l~-~~tv~enl~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra  231 (325)
                      ++|+||++.++ ..||+||+.++....     ......     ...+.++++.+...........+|||||||||+||||
T Consensus        81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~a  155 (501)
T PRK10762         81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKM-----YAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKV  155 (501)
T ss_pred             EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHH-----HHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHH
Confidence            99999999887 579999998763211     111111     1123344555443322233346899999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHh
Q 020527          232 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL  307 (325)
Q Consensus       232 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~  307 (325)
                      |+.+|++|||||||++||+.++..+.+.|+++++   .|+|||++|||++.+.. ||+|++|++|+++..|+++++.
T Consensus       156 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  229 (501)
T PRK10762        156 LSFESKVIIMDEPTDALTDTETESLFRVIRELKS---QGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT  229 (501)
T ss_pred             HhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence            9999999999999999999999999999999864   37899999999999865 9999999999999999887764

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=100.00  E-value=1.8e-47  Score=341.17  Aligned_cols=209  Identities=28%  Similarity=0.454  Sum_probs=175.0

Q ss_pred             EEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCH----HHHhc
Q 020527           81 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI----RWLRE  156 (325)
Q Consensus        81 ~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~----~~~r~  156 (325)
                      .+.|++++|+..  .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.    ...|+
T Consensus         2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   79 (218)
T cd03290           2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY   79 (218)
T ss_pred             eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence            578999999753  469999999999999999999999999999999999999999999999998764431    23456


Q ss_pred             ceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcC
Q 020527          157 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILR  234 (325)
Q Consensus       157 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~  234 (325)
                      .++|+||++.+|+.|++||+.++..  ...+....+.+..++.+.++..+.++++...  ...||||||||++|||||+.
T Consensus        80 ~i~~~~q~~~~~~~t~~~nl~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~  157 (218)
T cd03290          80 SVAYAAQKPWLLNATVEENITFGSP--FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQ  157 (218)
T ss_pred             eEEEEcCCCccccccHHHHHhhcCc--CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhh
Confidence            7999999998888899999987532  2234445566677777777766666555433  46799999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHH--HHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCE
Q 020527          235 DPAILLLDEATSALDSESEHYVKG--VLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR  296 (325)
Q Consensus       235 ~p~llllDEPts~LD~~~~~~i~~--~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~  296 (325)
                      +|+++||||||++||+.++..+.+  +++.+++   .|.|+|++||+++.+..||++++|++|.
T Consensus       158 ~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~---~~~tii~~sH~~~~~~~~d~i~~l~~G~  218 (218)
T cd03290         158 NTNIVFLDDPFSALDIHLSDHLMQEGILKFLQD---DKRTLVLVTHKLQYLPHADWIIAMKDGS  218 (218)
T ss_pred             CCCEEEEeCCccccCHHHHHHHHHHHHHHHHhc---CCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence            999999999999999999999988  6666643   4789999999999887799999999884

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.3e-48  Score=385.78  Aligned_cols=224  Identities=25%  Similarity=0.406  Sum_probs=180.5

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHH-Hhcc
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK  157 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~-~r~~  157 (325)
                      .|+++|++++|+++   ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+... .+++
T Consensus         5 ~l~~~~l~~~~~~~---~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~   81 (510)
T PRK09700          5 YISMAGIGKSFGPV---HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG   81 (510)
T ss_pred             eEEEeeeEEEcCCe---EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence            48999999999743   5999999999999999999999999999999999999999999999999987665543 3467


Q ss_pred             eEEEccCCcCc-cccHHHHHhcCCCCC---CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 020527          158 IGFVGQEPQLL-QMDIKSNIMYGCPKD---VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL  233 (325)
Q Consensus       158 i~~v~Q~~~l~-~~tv~enl~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~  233 (325)
                      ++|+||++.++ ..||+||+.++....   ..............+.++++.+...........+|||||||||+|||||+
T Consensus        82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~  161 (510)
T PRK09700         82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLM  161 (510)
T ss_pred             eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHh
Confidence            99999999887 579999998753110   00000000000112334455444332222334689999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527          234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH  308 (325)
Q Consensus       234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~  308 (325)
                      .+|++|||||||++||+.++..+.++|+++++   .|+|||++|||++.+.. ||++++|++|+++..|+++++..
T Consensus       162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  234 (510)
T PRK09700        162 LDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK---EGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSN  234 (510)
T ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCH
Confidence            99999999999999999999999999999964   37899999999999865 99999999999999999888754

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=100.00  E-value=8.1e-48  Score=331.82  Aligned_cols=171  Identities=34%  Similarity=0.662  Sum_probs=156.1

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      ++++|++++|++.   ++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..+++.++
T Consensus         1 l~~~~l~~~~~~~---~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~   76 (173)
T cd03230           1 IEVRNLSKRYGKK---TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIG   76 (173)
T ss_pred             CEEEEEEEEECCe---eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEE
Confidence            4689999999743   5999999999999999999999999999999999999999999999999886544 45678899


Q ss_pred             EEccCCcCcc-ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCE
Q 020527          160 FVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI  238 (325)
Q Consensus       160 ~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~l  238 (325)
                      |+||++.+|. .|+.||+.                                        |||||+||++|||||+.+|++
T Consensus        77 ~~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~i  116 (173)
T cd03230          77 YLPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPEL  116 (173)
T ss_pred             EEecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCE
Confidence            9999998875 69999973                                        799999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEE
Q 020527          239 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRI  297 (325)
Q Consensus       239 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i  297 (325)
                      +||||||++||+.++..+.+.|+++.+   +|.|+|++|||++.+. .||++++|++|++
T Consensus       117 lllDEPt~~LD~~~~~~l~~~l~~~~~---~g~tiii~th~~~~~~~~~d~i~~l~~g~i  173 (173)
T cd03230         117 LILDEPTSGLDPESRREFWELLRELKK---EGKTILLSSHILEEAERLCDRVAILNNGRI  173 (173)
T ss_pred             EEEeCCccCCCHHHHHHHHHHHHHHHH---CCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence            999999999999999999999999975   3789999999999887 5999999999964

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=100.00  E-value=9.1e-48  Score=332.96  Aligned_cols=174  Identities=45%  Similarity=0.698  Sum_probs=158.0

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCC--HHHHhcc
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD--IRWLREK  157 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~--~~~~r~~  157 (325)
                      |+++|++++|++   .++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+  ...+++.
T Consensus         1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~   77 (178)
T cd03229           1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR   77 (178)
T ss_pred             CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence            468999999974   35999999999999999999999999999999999999999999999999987654  4556788


Q ss_pred             eEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 020527          158 IGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP  236 (325)
Q Consensus       158 i~~v~Q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p  236 (325)
                      ++|+||++.++ ..|++||+.+.                                      ||||||||++|||||+.+|
T Consensus        78 i~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p  119 (178)
T cd03229          78 IGMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDP  119 (178)
T ss_pred             EEEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCC
Confidence            99999999887 47999998652                                      7999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCE
Q 020527          237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGR  296 (325)
Q Consensus       237 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~  296 (325)
                      +++||||||++||+.++..+.+.+++++++  .+.|+|++|||++.+. .||++++|++|+
T Consensus       120 ~llilDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~g~  178 (178)
T cd03229         120 DVLLLDEPTSALDPITRREVRALLKSLQAQ--LGITVVLVTHDLDEAARLADRVVVLRDGK  178 (178)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence            999999999999999999999999998752  3689999999999997 499999999884

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.5e-48  Score=385.29  Aligned_cols=219  Identities=28%  Similarity=0.433  Sum_probs=180.1

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC--CCCeEEECCEeCCCCCHHH-Hh
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDGQIYIDGFPLTDLDIRW-LR  155 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~--~~G~I~i~g~~i~~~~~~~-~r  155 (325)
                      +|+++|++++|++   .++|+|+||+|++||+++|+||||||||||+|+|+|+++|  ++|+|.++|.++...+... .+
T Consensus         5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~   81 (506)
T PRK13549          5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER   81 (506)
T ss_pred             eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence            4999999999974   3699999999999999999999999999999999999996  8999999999987655443 45


Q ss_pred             cceEEEccCCcCc-cccHHHHHhcCCCCC----CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527          156 EKIGFVGQEPQLL-QMDIKSNIMYGCPKD----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR  230 (325)
Q Consensus       156 ~~i~~v~Q~~~l~-~~tv~enl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr  230 (325)
                      +.++|+||++.++ ..|++||+.++....    ...+..     ...+.++++.+...........+|||||||||+|||
T Consensus        82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~  156 (506)
T PRK13549         82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAM-----YLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAK  156 (506)
T ss_pred             CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHH-----HHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHH
Confidence            7899999999887 579999998763211    111111     112334455544332222334679999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527          231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH  308 (325)
Q Consensus       231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~  308 (325)
                      ||+.+|++|||||||++||+.++..+.+.|.++++   +|+|||++|||++.+.. ||++++|++|+++..|+++++..
T Consensus       157 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~  232 (506)
T PRK13549        157 ALNKQARLLILDEPTASLTESETAVLLDIIRDLKA---HGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTE  232 (506)
T ss_pred             HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCCH
Confidence            99999999999999999999999999999999964   47899999999999865 99999999999999999887643

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=100.00  E-value=1.1e-47  Score=330.32  Aligned_cols=171  Identities=61%  Similarity=0.951  Sum_probs=156.9

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      |+++|++++|+++ ...+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...++++++
T Consensus         1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~   79 (171)
T cd03228           1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA   79 (171)
T ss_pred             CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence            4789999999753 136999999999999999999999999999999999999999999999999987666666778899


Q ss_pred             EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEE
Q 020527          160 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL  239 (325)
Q Consensus       160 ~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ll  239 (325)
                      |+||++.+|+.|++||+                                         ||||||||++||||++.+|+++
T Consensus        80 ~~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~ll  118 (171)
T cd03228          80 YVPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPIL  118 (171)
T ss_pred             EEcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEE
Confidence            99999988888999987                                         7999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCE
Q 020527          240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR  296 (325)
Q Consensus       240 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~  296 (325)
                      ||||||++||+.++..+.+.++++.    +++|+|++|||++.+..||++++|++|+
T Consensus       119 llDEP~~gLD~~~~~~l~~~l~~~~----~~~tii~~sh~~~~~~~~d~~~~l~~g~  171 (171)
T cd03228         119 ILDEATSALDPETEALILEALRALA----KGKTVIVIAHRLSTIRDADRIIVLDDGR  171 (171)
T ss_pred             EEECCCcCCCHHHHHHHHHHHHHhc----CCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence            9999999999999999999999884    2589999999999986799999999984

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.4e-47  Score=350.31  Aligned_cols=218  Identities=30%  Similarity=0.439  Sum_probs=176.7

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-----CCCeEEECCEeCCC----C
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD----L  149 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-----~~G~I~i~g~~i~~----~  149 (325)
                      .|+++|++++|+++   ++|+|+||+|++||+++|+|+||||||||+++|+|+.+|     ++|+|.++|.++..    .
T Consensus        16 ~l~~~~l~~~~~~~---~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~   92 (265)
T PRK14252         16 KSEVNKLNFYYGGY---QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEV   92 (265)
T ss_pred             eEEEEEEEEEECCe---eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccccc
Confidence            59999999999753   599999999999999999999999999999999999875     79999999987642    2


Q ss_pred             CHHHHhcceEEEccCCcCccccHHHHHhcCCC-CCCC-----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHH
Q 020527          150 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDVK-----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK  223 (325)
Q Consensus       150 ~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~  223 (325)
                      ....+++.++|+||++.+|+.|++||+.++.. ....     ++.+..+++..++.+.+...     ......+|||||+
T Consensus        93 ~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-----~~~~~~~LS~G~~  167 (265)
T PRK14252         93 DPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDR-----LGDLAFNLSGGQQ  167 (265)
T ss_pred             CHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHH-----HhCCcccCCHHHH
Confidence            23456788999999999887799999986521 0111     12233344444332111100     0111257999999


Q ss_pred             HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcC
Q 020527          224 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGN  302 (325)
Q Consensus       224 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~  302 (325)
                      ||++|||||+.+|+++||||||++||+.++..+.+.|+++++    +.|+|++||+++.+. .|||+++|++|++++.|+
T Consensus       168 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~----~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~  243 (265)
T PRK14252        168 QRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN----KVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA  243 (265)
T ss_pred             HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh----CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence            999999999999999999999999999999999999999853    479999999999986 599999999999999999


Q ss_pred             hHHHhh
Q 020527          303 HAELLH  308 (325)
Q Consensus       303 ~~~l~~  308 (325)
                      ++++..
T Consensus       244 ~~~~~~  249 (265)
T PRK14252        244 TDTIFI  249 (265)
T ss_pred             HHHHHh
Confidence            999875

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.1e-49  Score=334.79  Aligned_cols=224  Identities=26%  Similarity=0.446  Sum_probs=197.7

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      +|+++||+|+|+++   .+++++|++|++|.+++|+|||||||||||.++++|+++++|+|+++|.++..++.+++.+++
T Consensus         1 MI~i~nv~K~y~~~---~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~l   77 (252)
T COG4604           1 MITIENVSKSYGTK---VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKL   77 (252)
T ss_pred             CeeehhhhHhhCCE---EeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHH
Confidence            37899999999864   699999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEccCCcCc-cccHHHHHhcCCCCC-------CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527          159 GFVGQEPQLL-QMDIKSNIMYGCPKD-------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR  230 (325)
Q Consensus       159 ~~v~Q~~~l~-~~tv~enl~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr  230 (325)
                      +.+-|+.++- ..||+|-+.||+.+.       .++..+.++++...++++-+++-         .+||||||||.-||.
T Consensus        78 SILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryL---------d~LSGGQrQRAfIAM  148 (252)
T COG4604          78 SILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYL---------DELSGGQRQRAFIAM  148 (252)
T ss_pred             HHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhH---------Hhcccchhhhhhhhe
Confidence            9999998875 789999999986431       12334566777666666655543         579999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhc
Q 020527          231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK  309 (325)
Q Consensus       231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~  309 (325)
                      .++++.+.++||||.++||.+...++++.|+++.++  -|+||++|-||++++.. +|+|+-|++|+++..|+|+++++.
T Consensus       149 VlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~e--l~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~  226 (252)
T COG4604         149 VLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADE--LGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP  226 (252)
T ss_pred             eeeccCcEEEecCcccccchHHHHHHHHHHHHHHHH--hCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH
Confidence            999999999999999999999999999999999875  58999999999999975 999999999999999999999875


Q ss_pred             CHHHHHHH
Q 020527          310 GRLYAKLV  317 (325)
Q Consensus       310 ~~~~~~~~  317 (325)
                      + ...++|
T Consensus       227 ~-~L~eiy  233 (252)
T COG4604         227 E-ILSEIY  233 (252)
T ss_pred             H-HHHHHh
Confidence            4 344443

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=100.00  E-value=5.9e-48  Score=341.11  Aligned_cols=196  Identities=33%  Similarity=0.510  Sum_probs=161.4

Q ss_pred             EEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCH----HHHhcc
Q 020527           82 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI----RWLREK  157 (325)
Q Consensus        82 ~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~----~~~r~~  157 (325)
                      ++|+++.|+++   ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....    ...++.
T Consensus         1 i~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~   77 (206)
T TIGR03608         1 LKNISKKFGDK---IILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREK   77 (206)
T ss_pred             CcceEEEECCE---EEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhC
Confidence            47899999743   59999999999999999999999999999999999999999999999998654321    234678


Q ss_pred             eEEEccCCcCcc-ccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 020527          158 IGFVGQEPQLLQ-MDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA  231 (325)
Q Consensus       158 i~~v~Q~~~l~~-~tv~enl~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra  231 (325)
                      ++|++|++.+|+ .|++||+.++... ...    .+.+.++++..++.+..++.+         .+||||||||++||||
T Consensus        78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~lS~G~~qr~~lara  148 (206)
T TIGR03608        78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKI---------YELSGGEQQRVALARA  148 (206)
T ss_pred             eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCCh---------hhCCHHHHHHHHHHHH
Confidence            999999999885 7999999874211 111    223344555555544433332         5799999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEE
Q 020527          232 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI  292 (325)
Q Consensus       232 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l  292 (325)
                      |+.+|++|||||||++||+.+++.+.+.|+++.+   .|.|+|++||+++.+..||++++|
T Consensus       149 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~sh~~~~~~~~d~i~~l  206 (206)
T TIGR03608       149 ILKDPPLILADEPTGSLDPKNRDEVLDLLLELND---EGKTIIIVTHDPEVAKQADRVIEL  206 (206)
T ss_pred             HHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHhhcCEEEeC
Confidence            9999999999999999999999999999999864   378999999999977779999875

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=100.00  E-value=2e-46  Score=346.58  Aligned_cols=239  Identities=28%  Similarity=0.411  Sum_probs=189.7

Q ss_pred             HHHHHhHhcCCCCccccccccccCCcccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcC
Q 020527           52 EKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus        52 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      +.+.+++..++++...   .+.......|+++|+++.  .   +++|+++||+|++||+++|+||||||||||+++|+|+
T Consensus        15 ~~~~~~~~~~~~~~~~---~~~~~~~~~l~i~nls~~--~---~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl   86 (282)
T cd03291          15 EGFGELLEKAKQENND---RKHSSDDNNLFFSNLCLV--G---APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGE   86 (282)
T ss_pred             HHHHHHHhcccccccc---cccCCCCCeEEEEEEEEe--c---ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4555666665543221   111222335999999985  2   2599999999999999999999999999999999999


Q ss_pred             CCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccc
Q 020527          132 YEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET  211 (325)
Q Consensus       132 ~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (325)
                      ++|++|+|.++|             .|+|+||++.+++.|++||+.++..  .........++..++.+.+..++.+..+
T Consensus        87 ~~p~~G~I~i~g-------------~i~yv~q~~~l~~~tv~enl~~~~~--~~~~~~~~~l~~~~l~~~l~~~~~~~~~  151 (282)
T cd03291          87 LEPSEGKIKHSG-------------RISFSSQFSWIMPGTIKENIIFGVS--YDEYRYKSVVKACQLEEDITKFPEKDNT  151 (282)
T ss_pred             CCCCCcEEEECC-------------EEEEEeCcccccccCHHHHhhcccc--cCHHHHHHHHHHhCCHHHHHhccccccc
Confidence            999999999988             3999999999888899999987632  1223344555666777777777665544


Q ss_pred             ccC--CCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHH-HHhhccCCCCeEEEEEecCchHHHhcCE
Q 020527          212 LVD--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL-HALRNDCKTKRTVIVIAHRLSTIKAVDR  288 (325)
Q Consensus       212 ~~~--~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l-~~l~~~~~~g~tvi~vtH~~~~~~~~d~  288 (325)
                      ...  ...||||||||++|||||+.+|++|||||||++||+.++..+.+.+ ..+.    .+.|||++||+++.+..||+
T Consensus       152 ~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~----~~~tIiiisH~~~~~~~~d~  227 (282)
T cd03291         152 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM----ANKTRILVTSKMEHLKKADK  227 (282)
T ss_pred             eecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh----CCCEEEEEeCChHHHHhCCE
Confidence            332  3689999999999999999999999999999999999999898754 5553    36799999999998877999


Q ss_pred             EEEEeCCEEEEEcChHHHhhcCHHHHHHH
Q 020527          289 IVVIDDGRIIEVGNHAELLHKGRLYAKLV  317 (325)
Q Consensus       289 v~~l~~G~i~~~g~~~~l~~~~~~~~~~~  317 (325)
                      +++|++|++++.|+++++......|.+.+
T Consensus       228 i~~l~~G~i~~~g~~~~~~~~~~~~~~~~  256 (282)
T cd03291         228 ILILHEGSSYFYGTFSELQSLRPDFSSKL  256 (282)
T ss_pred             EEEEECCEEEEECCHHHHHhcchHHHHHH
Confidence            99999999999999999876544444333

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=100.00  E-value=1.1e-47  Score=381.06  Aligned_cols=213  Identities=23%  Similarity=0.283  Sum_probs=180.9

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      +|+++|++++|+++   .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+...+++.+
T Consensus         3 ~l~~~~l~~~~~~~---~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i   79 (490)
T PRK10938          3 SLQISQGTFRLSDT---KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLV   79 (490)
T ss_pred             eEEEEeEEEEcCCe---eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHh
Confidence            59999999999753   599999999999999999999999999999999999999999999999887655555566779


Q ss_pred             EEEccCCcC--c-------cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 020527          159 GFVGQEPQL--L-------QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA  229 (325)
Q Consensus       159 ~~v~Q~~~l--~-------~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA  229 (325)
                      +|+||++.+  +       ..|+++|+.++.   ...+++.++++..++.+..++.+         .+|||||||||+||
T Consensus        80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~la  147 (490)
T PRK10938         80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEV---KDPARCEQLAQQFGITALLDRRF---------KYLSTGETRKTLLC  147 (490)
T ss_pred             ceeccCcchhhcccchhhccccHHHhcccch---hHHHHHHHHHHHcCCHhhhhCCc---------ccCCHHHHHHHHHH
Confidence            999998753  1       358888876531   12334555666666655544443         57999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527          230 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH  308 (325)
Q Consensus       230 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~  308 (325)
                      |||+.+|++|||||||++||+.+++.+.+.|+++++   +|+|||++|||++.+.. ||++++|++|+++..|+++++++
T Consensus       148 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~  224 (490)
T PRK10938        148 QALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQ---SGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ  224 (490)
T ss_pred             HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh---cCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhc
Confidence            999999999999999999999999999999999864   37899999999999865 99999999999999999988765


Q ss_pred             c
Q 020527          309 K  309 (325)
Q Consensus       309 ~  309 (325)
                      .
T Consensus       225 ~  225 (490)
T PRK10938        225 Q  225 (490)
T ss_pred             c
Confidence            3

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.6e-47  Score=348.41  Aligned_cols=218  Identities=28%  Similarity=0.410  Sum_probs=178.9

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-----CCCeEEECCEeCCCC--CHH
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDL--DIR  152 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-----~~G~I~i~g~~i~~~--~~~  152 (325)
                      +.++++++.|++   ..+|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++...  ...
T Consensus         9 ~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~   85 (261)
T PRK14263          9 MDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV   85 (261)
T ss_pred             EEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence            789999999964   3699999999999999999999999999999999999986     799999999988542  233


Q ss_pred             HHhcceEEEccCCcCccccHHHHHhcCCCCCC----CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 020527          153 WLREKIGFVGQEPQLLQMDIKSNIMYGCPKDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI  228 (325)
Q Consensus       153 ~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i  228 (325)
                      .+++.++|+||++.+|..|++||+.++.....    ..+.+.++++..++.+.+...     ......+|||||+||++|
T Consensus        86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~-----~~~~~~~LS~G~~qrv~l  160 (261)
T PRK14263         86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDK-----LKVSGLSLSGGQQQRLCI  160 (261)
T ss_pred             hhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhh-----hhCCcccCCHHHHHHHHH
Confidence            56778999999999888999999987532111    112334455555443322111     011235799999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEe--------CCEEEE
Q 020527          229 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVID--------DGRIIE  299 (325)
Q Consensus       229 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~--------~G~i~~  299 (325)
                      ||||+.+|++|||||||++||+.++..+.+.|+++.    ++.|+|++||+++.+. .|||+++|+        +|++++
T Consensus       161 aral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~----~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~  236 (261)
T PRK14263        161 ARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK----KDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVE  236 (261)
T ss_pred             HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEE
Confidence            999999999999999999999999999999999984    2579999999999885 599999996        899999


Q ss_pred             EcChHHHhhc
Q 020527          300 VGNHAELLHK  309 (325)
Q Consensus       300 ~g~~~~l~~~  309 (325)
                      .|+++++++.
T Consensus       237 ~g~~~~~~~~  246 (261)
T PRK14263        237 MGPTAQIFQN  246 (261)
T ss_pred             eCCHHHHHhC
Confidence            9999998764

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=100.00  E-value=1e-47  Score=344.67  Aligned_cols=207  Identities=29%  Similarity=0.450  Sum_probs=167.0

Q ss_pred             EEEEEEEEECCCCC-CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC---CCCCeEEECCEeCCCCCHHHHh
Q 020527           80 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE---PSDGQIYIDGFPLTDLDIRWLR  155 (325)
Q Consensus        80 i~~~~v~~~y~~~~-~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~---~~~G~I~i~g~~i~~~~~~~~r  155 (325)
                      +.++||+++|++.+ .+++++|+||+|++||+++|+||||||||||+++|+|+++   |++|+|.++|.++.   ...++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~   80 (226)
T cd03234           4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ   80 (226)
T ss_pred             ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence            67999999997531 2579999999999999999999999999999999999999   99999999999874   23567


Q ss_pred             cceEEEccCCcCcc-ccHHHHHhcCCCC---C-CCHH----HHHH-HHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527          156 EKIGFVGQEPQLLQ-MDIKSNIMYGCPK---D-VKNE----DIEW-AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR  225 (325)
Q Consensus       156 ~~i~~v~Q~~~l~~-~tv~enl~~~~~~---~-~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR  225 (325)
                      +.++|+||++.+|+ .|++||+.++...   . ....    .... .++..++.+..+         .....|||||+||
T Consensus        81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---------~~~~~LS~G~~qr  151 (226)
T cd03234          81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGG---------NLVKGISGGERRR  151 (226)
T ss_pred             ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhc---------ccccCcCHHHHHH
Confidence            88999999998885 6999999864210   0 0111    0111 222222222211         1235799999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCc-hHH-HhcCEEEEEeCCEEEEEc
Q 020527          226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL-STI-KAVDRIVVIDDGRIIEVG  301 (325)
Q Consensus       226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~-~~~-~~~d~v~~l~~G~i~~~g  301 (325)
                      ++|||||+.+|+++||||||++||+.++..+.+.++++.+   .+.|+|++||++ +.+ ..||++++|++|++++.|
T Consensus       152 l~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~---~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g  226 (226)
T cd03234         152 VSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR---RNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG  226 (226)
T ss_pred             HHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence            9999999999999999999999999999999999999864   378999999998 466 459999999999998764

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=100.00  E-value=5.4e-47  Score=345.33  Aligned_cols=210  Identities=27%  Similarity=0.463  Sum_probs=177.2

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .|+++||+++|+++   .+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|           +..+
T Consensus         4 ~l~~~~l~~~~~~~---~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i   69 (251)
T PRK09544          4 LVSLENVSVSFGQR---RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRI   69 (251)
T ss_pred             EEEEeceEEEECCc---eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCE
Confidence            48999999999753   599999999999999999999999999999999999999999999986           2369


Q ss_pred             EEEccCCcCcc---ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 020527          159 GFVGQEPQLLQ---MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD  235 (325)
Q Consensus       159 ~~v~Q~~~l~~---~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~  235 (325)
                      +|+||++.++.   .|+.+|+.+.  .....+++.++++..++.+.+++.+         ..||||||||++|||||+.+
T Consensus        70 ~~v~q~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGq~qrv~laral~~~  138 (251)
T PRK09544         70 GYVPQKLYLDTTLPLTVNRFLRLR--PGTKKEDILPALKRVQAGHLIDAPM---------QKLSGGETQRVLLARALLNR  138 (251)
T ss_pred             EEeccccccccccChhHHHHHhcc--ccccHHHHHHHHHHcCChHHHhCCh---------hhCCHHHHHHHHHHHHHhcC
Confidence            99999987753   4889988653  1223455666777777776665543         56999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhhcCHHHH
Q 020527          236 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHKGRLYA  314 (325)
Q Consensus       236 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~  314 (325)
                      |+++||||||++||+.++..+.+.|+++.++  .|+|||++|||++.+. .||++++|++ ++++.|+++++.+. ..+.
T Consensus       139 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~--~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~~-~~~~  214 (251)
T PRK09544        139 PQLLVLDEPTQGVDVNGQVALYDLIDQLRRE--LDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSLH-PEFI  214 (251)
T ss_pred             CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhCC-HHHH
Confidence            9999999999999999999999999998652  3789999999999986 4999999965 79999999988653 3344


Q ss_pred             HHH
Q 020527          315 KLV  317 (325)
Q Consensus       315 ~~~  317 (325)
                      +++
T Consensus       215 ~~~  217 (251)
T PRK09544        215 SMF  217 (251)
T ss_pred             HHh
Confidence            444

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=8.4e-48  Score=374.66  Aligned_cols=229  Identities=29%  Similarity=0.419  Sum_probs=183.9

Q ss_pred             cEEEEEEEEECCCCCC-CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCC----CCeEEECCEeCCCCCHHH
Q 020527           79 HVQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS----DGQIYIDGFPLTDLDIRW  153 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~-~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~----~G~I~i~g~~i~~~~~~~  153 (325)
                      .|+++|+++.|..... ..+++||||+|.+||++||+|+|||||||+.++|.|++++.    +|+|.|+|+++..++.+.
T Consensus         5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~   84 (539)
T COG1123           5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE   84 (539)
T ss_pred             eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence            5999999999975422 36999999999999999999999999999999999999987    899999999887776544


Q ss_pred             H----hcceEEEccCCc-Cc-c-ccHHHHHhcCC--CCCC----CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCCh
Q 020527          154 L----REKIGFVGQEPQ-LL-Q-MDIKSNIMYGC--PKDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSG  220 (325)
Q Consensus       154 ~----r~~i~~v~Q~~~-l~-~-~tv~enl~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSg  220 (325)
                      +    .+.|+|+||+|. .+ + +||.+.|.-..  ....    ..++..+.++.+++.+-...       ...+++|||
T Consensus        85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~-------~~yPheLSG  157 (539)
T COG1123          85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR-------DRYPHQLSG  157 (539)
T ss_pred             HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh-------ccCCcccCc
Confidence            3    267999999984 34 4 67777764321  1111    12223334444444332221       123478999


Q ss_pred             HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEE
Q 020527          221 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIE  299 (325)
Q Consensus       221 Gq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~  299 (325)
                      ||||||.||+||+.+|++||+||||++||+.++.+|+++|+++.++  .|.++|+||||++.+.. ||||+||++|++++
T Consensus       158 G~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e--~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE  235 (539)
T COG1123         158 GMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRE--LGMAVLFITHDLGVVAELADRVVVMYKGEIVE  235 (539)
T ss_pred             hHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHH--cCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence            9999999999999999999999999999999999999999999874  69999999999999875 99999999999999


Q ss_pred             EcChHHHhhcC-HHHHHH
Q 020527          300 VGNHAELLHKG-RLYAKL  316 (325)
Q Consensus       300 ~g~~~~l~~~~-~~~~~~  316 (325)
                      .|++++++++. +-|.+.
T Consensus       236 ~G~~~~i~~~p~hpYT~~  253 (539)
T COG1123         236 TGPTEEILSNPQHPYTRG  253 (539)
T ss_pred             ecCHHHHHhccCCcccHH
Confidence            99999999763 345443

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=100.00  E-value=3.8e-47  Score=345.76  Aligned_cols=209  Identities=23%  Similarity=0.371  Sum_probs=172.9

Q ss_pred             EEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 020527           81 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF  160 (325)
Q Consensus        81 ~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~  160 (325)
                      +++||++.       .+|+|+||+|++||+++|+||||||||||+++|+|++++ +|+|.++|+++...+...+++.++|
T Consensus         2 ~~~~l~~~-------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~   73 (248)
T PRK03695          2 QLNDVAVS-------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAY   73 (248)
T ss_pred             cccccchh-------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEE
Confidence            56788774       179999999999999999999999999999999999964 9999999999877666666778999


Q ss_pred             EccCCcCc-cccHHHHHhcCCCCCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC-
Q 020527          161 VGQEPQLL-QMDIKSNIMYGCPKDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR-  234 (325)
Q Consensus       161 v~Q~~~l~-~~tv~enl~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~-  234 (325)
                      +||++.++ ..|+++|+.++......    .+.+.++++..++.+.+++.         ...||||||||++|||||+. 
T Consensus        74 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~qrv~la~al~~~  144 (248)
T PRK03695         74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRS---------VNQLSGGEWQRVRLAAVVLQV  144 (248)
T ss_pred             ecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCC---------cccCCHHHHHHHHHHHHHhcc
Confidence            99998665 68999999875321111    12233444445544433332         25799999999999999997 


Q ss_pred             ------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHh
Q 020527          235 ------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELL  307 (325)
Q Consensus       235 ------~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~  307 (325)
                            +|++|||||||++||+.++..+.++|+++++   +|.|||++||+++.+. .||++++|++|++++.|+++++.
T Consensus       145 ~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~---~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  221 (248)
T PRK03695        145 WPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ---QGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVL  221 (248)
T ss_pred             ccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence                  6799999999999999999999999999864   3789999999999875 59999999999999999998886


Q ss_pred             hc
Q 020527          308 HK  309 (325)
Q Consensus       308 ~~  309 (325)
                      ..
T Consensus       222 ~~  223 (248)
T PRK03695        222 TP  223 (248)
T ss_pred             Cc
Confidence            53

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.9e-47  Score=354.89  Aligned_cols=219  Identities=29%  Similarity=0.479  Sum_probs=176.5

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC-----CCCCeEEECCEeCCCC--CH
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTDL--DI  151 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~-----~~~G~I~i~g~~i~~~--~~  151 (325)
                      .|+++||+++|+++   .+|+++||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|.++...  +.
T Consensus        45 ~l~i~nl~~~~~~~---~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~  121 (305)
T PRK14264         45 KLSVEDLDVYYGDD---HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL  121 (305)
T ss_pred             eEEEEEEEEEeCCe---eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccH
Confidence            59999999999753   59999999999999999999999999999999999986     6899999999988542  34


Q ss_pred             HHHhcceEEEccCCcCccccHHHHHhcCCCCC-------------CC-----HHHHHHHHHHcCHHHHHHhCCCCccccc
Q 020527          152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD-------------VK-----NEDIEWAAKQAYVHEFILSLPCGYETLV  213 (325)
Q Consensus       152 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~-------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (325)
                      ..+++.++|+||++.+|+.||+||+.++....             ..     .+.+..+++.+++.+.+..     ....
T Consensus       122 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~  196 (305)
T PRK14264        122 VELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVND-----RLDD  196 (305)
T ss_pred             HHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhH-----HhcC
Confidence            45678899999999988889999998752110             00     1112223333333211110     0111


Q ss_pred             CCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEE-EE
Q 020527          214 DDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRI-VV  291 (325)
Q Consensus       214 ~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v-~~  291 (325)
                      ...+|||||||||+|||||+++|+||||||||++||+.++..+.+.|+++++    ++|+|++||+++.+.. ||++ ++
T Consensus       197 ~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~----~~tiiivtH~~~~i~~~~d~i~~~  272 (305)
T PRK14264        197 NALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE----EYTVVVVTHNMQQAARISDQTAVF  272 (305)
T ss_pred             ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc----CCEEEEEEcCHHHHHHhcCEEEEE
Confidence            2367999999999999999999999999999999999999999999999864    3699999999999865 9997 57


Q ss_pred             EeCCEEEEEcChHHHhhc
Q 020527          292 IDDGRIIEVGNHAELLHK  309 (325)
Q Consensus       292 l~~G~i~~~g~~~~l~~~  309 (325)
                      |++|++++.|+++++++.
T Consensus       273 l~~G~i~~~g~~~~~~~~  290 (305)
T PRK14264        273 LTGGELVEYDDTDKIFEN  290 (305)
T ss_pred             ecCCEEEEeCCHHHHHhC
Confidence            899999999999988754

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=100.00  E-value=5.1e-47  Score=345.39  Aligned_cols=219  Identities=23%  Similarity=0.291  Sum_probs=171.6

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcC--CCCCCCeEEECCEeCCCCCHHHHhc
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWLRE  156 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl--~~~~~G~I~i~g~~i~~~~~~~~r~  156 (325)
                      .|+++||+++|+++   .+|+|+||+|++||+++|+|+||||||||+++|+|+  ++|++|+|+++|.++...+....++
T Consensus         7 ~l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~   83 (252)
T CHL00131          7 ILEIKNLHASVNEN---EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH   83 (252)
T ss_pred             eEEEEeEEEEeCCE---EeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence            48999999999743   599999999999999999999999999999999998  6899999999999987765544443


Q ss_pred             -ceEEEccCCcCcc-ccHHHHHhcCCCCC-----CCHHHHHHHHHHcCHHHHHHhCCCC-cccccCCC-CCChHHHHHHH
Q 020527          157 -KIGFVGQEPQLLQ-MDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCG-YETLVDDD-LLSGGQKQRIA  227 (325)
Q Consensus       157 -~i~~v~Q~~~l~~-~tv~enl~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~LSgGq~QRv~  227 (325)
                       .++|+||++.+++ .|+.+|+.++....     .......+..  ..+.++++.+... ........ .||||||||++
T Consensus        84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~  161 (252)
T CHL00131         84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFL--EIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNE  161 (252)
T ss_pred             eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHH--HHHHHHHHHcCCchhhhccccccCCCHHHHHHHH
Confidence             5899999998885 68999987542110     0000000000  1122233332221 00111123 49999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh--cCEEEEEeCCEEEEEcChHH
Q 020527          228 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVIDDGRIIEVGNHAE  305 (325)
Q Consensus       228 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~--~d~v~~l~~G~i~~~g~~~~  305 (325)
                      |||||+.+|+++||||||++||+.++..+.+.|+++.+   +|+|||++|||++.+..  ||++++|++|++++.|+++.
T Consensus       162 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~~  238 (252)
T CHL00131        162 ILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMT---SENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAEL  238 (252)
T ss_pred             HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChhh
Confidence            99999999999999999999999999999999999864   37899999999998864  89999999999999999873

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.2e-47  Score=347.27  Aligned_cols=219  Identities=27%  Similarity=0.472  Sum_probs=175.8

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECC------EeCCCCCHH
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG------FPLTDLDIR  152 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g------~~i~~~~~~  152 (325)
                      .|.++|++++|+++   .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|      .++...+..
T Consensus        10 ~i~~~~~~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~   86 (257)
T PRK14246         10 VFNISRLYLYINDK---AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI   86 (257)
T ss_pred             heeeeeEEEecCCc---eeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence            49999999999753   599999999999999999999999999999999999999997776665      455444555


Q ss_pred             HHhcceEEEccCCcCcc-ccHHHHHhcCCCC-C-CCHHH----HHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527          153 WLREKIGFVGQEPQLLQ-MDIKSNIMYGCPK-D-VKNED----IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR  225 (325)
Q Consensus       153 ~~r~~i~~v~Q~~~l~~-~tv~enl~~~~~~-~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR  225 (325)
                      .+++.++|+||++.+|+ .|++||+.++... . ...+.    +..+++..++...+..     ........||+|||||
T Consensus        87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~LS~G~~qr  161 (257)
T PRK14246         87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYD-----RLNSPASQLSGGQQQR  161 (257)
T ss_pred             HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchh-----hhcCCcccCCHHHHHH
Confidence            67888999999999885 6999999875211 1 11111    2233333333211100     0011235799999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChH
Q 020527          226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA  304 (325)
Q Consensus       226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~  304 (325)
                      ++|||||+.+|+++||||||++||+.++..+.+.|.++.+    +.|||++||+++.+. .||++++|++|++++.|+++
T Consensus       162 l~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~----~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~  237 (257)
T PRK14246        162 LTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN----EIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSN  237 (257)
T ss_pred             HHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc----CcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence            9999999999999999999999999999999999998852    579999999999985 59999999999999999999


Q ss_pred             HHhhc
Q 020527          305 ELLHK  309 (325)
Q Consensus       305 ~l~~~  309 (325)
                      ++.+.
T Consensus       238 ~~~~~  242 (257)
T PRK14246        238 EIFTS  242 (257)
T ss_pred             HHHhC
Confidence            98765

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=100.00  E-value=2.3e-47  Score=344.79  Aligned_cols=195  Identities=29%  Similarity=0.458  Sum_probs=157.5

Q ss_pred             CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEc-cCCcCc-cccH
Q 020527           95 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG-QEPQLL-QMDI  172 (325)
Q Consensus        95 ~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~-Q~~~l~-~~tv  172 (325)
                      +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++|+| |++.++ ..|+
T Consensus        34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv  112 (236)
T cd03267          34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV  112 (236)
T ss_pred             eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence            3699999999999999999999999999999999999999999999999886442 234567899998 556666 5899


Q ss_pred             HHHHhcCCC-CCCCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCC
Q 020527          173 KSNIMYGCP-KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSA  247 (325)
Q Consensus       173 ~enl~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~  247 (325)
                      +||+.+... .....+    .+...++..++.+..+..         ...||||||||++|||||+.+|+++||||||++
T Consensus       113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~---------~~~LS~G~~qrl~la~al~~~p~llllDEPt~~  183 (236)
T cd03267         113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTP---------VRQLSLGQRMRAEIAAALLHEPEILFLDEPTIG  183 (236)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCC---------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence            999865321 111111    122333333443333222         257999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEc
Q 020527          248 LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG  301 (325)
Q Consensus       248 LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g  301 (325)
                      ||+.+++.+.+.|.+++++  .+.|||++||+++.+.. ||++++|++|++++.|
T Consensus       184 LD~~~~~~l~~~l~~~~~~--~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g  236 (236)
T cd03267         184 LDVVAQENIRNFLKEYNRE--RGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG  236 (236)
T ss_pred             CCHHHHHHHHHHHHHHHhc--CCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence            9999999999999998653  47899999999998865 9999999999998754

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=4.5e-47  Score=335.49  Aligned_cols=197  Identities=22%  Similarity=0.332  Sum_probs=166.6

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      ++++|++++|+++   ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ...+++++
T Consensus         2 l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~   77 (204)
T PRK13538          2 LEARNLACERDER---ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLL   77 (204)
T ss_pred             eEEEEEEEEECCE---EEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheE
Confidence            7899999999753   5999999999999999999999999999999999999999999999999886543 34567899


Q ss_pred             EEccCCcCc-cccHHHHHhcCCCC-C-CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 020527          160 FVGQEPQLL-QMDIKSNIMYGCPK-D-VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP  236 (325)
Q Consensus       160 ~v~Q~~~l~-~~tv~enl~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p  236 (325)
                      |++|++.++ ..|++||+.++... . ...+.+..+++..++.+..++.+         ..||||||||++|||||+++|
T Consensus        78 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS~G~~qrl~la~al~~~p  148 (204)
T PRK13538         78 YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPV---------RQLSAGQQRRVALARLWLTRA  148 (204)
T ss_pred             EeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCCh---------hhcCHHHHHHHHHHHHHhcCC
Confidence            999999887 47999999765211 1 22344556677777765554433         579999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhc-CEEEEE
Q 020527          237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVI  292 (325)
Q Consensus       237 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~-d~v~~l  292 (325)
                      +++||||||++||+.++..+.++|+++++   ++.|+|++|||++.+..| +|++++
T Consensus       149 ~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiii~sh~~~~i~~~~~~~~~~  202 (204)
T PRK13538        149 PLWILDEPFTAIDKQGVARLEALLAQHAE---QGGMVILTTHQDLPVASDKVRKLRL  202 (204)
T ss_pred             CEEEEeCCCccCCHHHHHHHHHHHHHHHH---CCCEEEEEecChhhhccCCceEEec
Confidence            99999999999999999999999999864   377999999999999775 677766

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=100.00  E-value=8.5e-47  Score=333.04  Aligned_cols=196  Identities=23%  Similarity=0.360  Sum_probs=165.7

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      |+++|+++.|+++   .+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.... ..++++++
T Consensus         1 l~i~~l~~~~~~~---~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~   76 (201)
T cd03231           1 LEADELTCERDGR---ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLL   76 (201)
T ss_pred             CEEEEEEEEeCCc---eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheE
Confidence            4789999999753   5999999999999999999999999999999999999999999999999875432 45678899


Q ss_pred             EEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCE
Q 020527          160 FVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI  238 (325)
Q Consensus       160 ~v~Q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~l  238 (325)
                      |+||++.++ ..|++||+.+... ....+.+.++++..++.+..++.         ..+||||||||++|||||+.+|++
T Consensus        77 ~~~q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~qrl~laral~~~p~l  146 (201)
T cd03231          77 YLGHAPGIKTTLSVLENLRFWHA-DHSDEQVEEALARVGLNGFEDRP---------VAQLSAGQQRRVALARLLLSGRPL  146 (201)
T ss_pred             EeccccccCCCcCHHHHHHhhcc-cccHHHHHHHHHHcCChhhhcCc---------hhhCCHHHHHHHHHHHHHhcCCCE
Confidence            999999876 5899999987532 22344555666666665544332         257999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEE
Q 020527          239 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVI  292 (325)
Q Consensus       239 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l  292 (325)
                      +||||||++||+.+++.+.+.|+++.+   +|.|+|++|||..... .|++++++
T Consensus       147 lllDEPt~~LD~~~~~~l~~~l~~~~~---~g~tiii~sH~~~~~~~~~~~~~~~  198 (201)
T cd03231         147 WILDEPTTALDKAGVARFAEAMAGHCA---RGGMVVLTTHQDLGLSEAGARELDL  198 (201)
T ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCchhhhhccceeEec
Confidence            999999999999999999999998864   3789999999988765 58999877

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.6e-47  Score=385.45  Aligned_cols=220  Identities=25%  Similarity=0.417  Sum_probs=176.7

Q ss_pred             cEEEEEEEEECCCCC-CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCC----------
Q 020527           79 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT----------  147 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~-~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~----------  147 (325)
                      .|+++|++++|+... ..++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++.          
T Consensus        12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~   91 (623)
T PRK10261         12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS   91 (623)
T ss_pred             eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence            599999999996321 236999999999999999999999999999999999999999999999997552          


Q ss_pred             CCCHH---HHh-cceEEEccCC--cCcc-ccHHHHHhcCCCC--CCCH----HHHHHHHHHcCHH---HHHHhCCCCccc
Q 020527          148 DLDIR---WLR-EKIGFVGQEP--QLLQ-MDIKSNIMYGCPK--DVKN----EDIEWAAKQAYVH---EFILSLPCGYET  211 (325)
Q Consensus       148 ~~~~~---~~r-~~i~~v~Q~~--~l~~-~tv~enl~~~~~~--~~~~----~~~~~~~~~~~~~---~~~~~~~~~~~~  211 (325)
                      ..+..   .+| ++||||||+|  .+++ .||+||+.++...  ....    +++.++++.+++.   ..+++       
T Consensus        92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-------  164 (623)
T PRK10261         92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSR-------  164 (623)
T ss_pred             cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhC-------
Confidence            11222   233 5799999998  5664 7999999875211  1111    2233334444442   12222       


Q ss_pred             ccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEE
Q 020527          212 LVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIV  290 (325)
Q Consensus       212 ~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~  290 (325)
                        ...+|||||||||+|||||+.+|++|||||||++||+.++.++.+++++++++  .|+|||+||||++.+.. ||||+
T Consensus       165 --~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~--~g~tvi~itHdl~~~~~~adri~  240 (623)
T PRK10261        165 --YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKE--MSMGVIFITHDMGVVAEIADRVL  240 (623)
T ss_pred             --CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHh--cCCEEEEEcCCHHHHHHhCCEEE
Confidence              23679999999999999999999999999999999999999999999999753  48899999999999865 99999


Q ss_pred             EEeCCEEEEEcChHHHhhc
Q 020527          291 VIDDGRIIEVGNHAELLHK  309 (325)
Q Consensus       291 ~l~~G~i~~~g~~~~l~~~  309 (325)
                      +|++|++++.|++++++..
T Consensus       241 vl~~G~i~~~g~~~~~~~~  259 (623)
T PRK10261        241 VMYQGEAVETGSVEQIFHA  259 (623)
T ss_pred             EeeCCeecccCCHHHhhcC
Confidence            9999999999999988753

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=100.00  E-value=9e-47  Score=333.19  Aligned_cols=193  Identities=24%  Similarity=0.389  Sum_probs=161.4

Q ss_pred             cEEEEEEEEECCCC-CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC---CCCCeEEECCEeCCCCCHHHH
Q 020527           79 HVQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE---PSDGQIYIDGFPLTDLDIRWL  154 (325)
Q Consensus        79 ~i~~~~v~~~y~~~-~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~---~~~G~I~i~g~~i~~~~~~~~  154 (325)
                      .+.++||+|.|+.. .++.+|+|+||+|++||+++|+||||||||||+++|+|+++   |++|+|.++|.++.... ...
T Consensus         3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~   81 (202)
T cd03233           3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY   81 (202)
T ss_pred             eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence            47899999999753 23579999999999999999999999999999999999999   89999999999987543 345


Q ss_pred             hcceEEEccCCcCcc-ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 020527          155 REKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL  233 (325)
Q Consensus       155 r~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~  233 (325)
                      ++.++|+||++.+++ .||+||+.++...       .           .+.         ....||||||||++|||||+
T Consensus        82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------~-----------~~~---------~~~~LS~Ge~qrl~laral~  134 (202)
T cd03233          82 PGEIIYVSEEDVHFPTLTVRETLDFALRC-------K-----------GNE---------FVRGISGGERKRVSIAEALV  134 (202)
T ss_pred             cceEEEEecccccCCCCcHHHHHhhhhhh-------c-----------ccc---------chhhCCHHHHHHHHHHHHHh
Confidence            778999999988875 7999999874210       0           111         12469999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEe-cCchHHH-hcCEEEEEeCCEEEEEc
Q 020527          234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIA-HRLSTIK-AVDRIVVIDDGRIIEVG  301 (325)
Q Consensus       234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vt-H~~~~~~-~~d~v~~l~~G~i~~~g  301 (325)
                      .+|+++||||||++||+.+++.+.+.++++.++  .+.|+|+++ |+.+.+. .||++++|++|++++.|
T Consensus       135 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~--~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g  202 (202)
T cd03233         135 SRASVLCWDNSTRGLDSSTALEILKCIRTMADV--LKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG  202 (202)
T ss_pred             hCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh--CCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence            999999999999999999999999999998653  255666654 5567765 59999999999998754

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=5e-47  Score=334.18  Aligned_cols=196  Identities=22%  Similarity=0.380  Sum_probs=161.6

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      |+++|++++|+++   ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.. ....++++++
T Consensus         2 l~~~~l~~~~~~~---~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~   77 (200)
T PRK13540          2 LDVIELDFDYHDQ---PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLC   77 (200)
T ss_pred             EEEEEEEEEeCCe---eEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheE
Confidence            7899999999753   59999999999999999999999999999999999999999999999998764 3345678899


Q ss_pred             EEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCE
Q 020527          160 FVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI  238 (325)
Q Consensus       160 ~v~Q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~l  238 (325)
                      |+||++.++ ..||+||+.++.........+.+.++..++.+..++         ...+|||||+||++||||++.+|++
T Consensus        78 ~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~~rv~laral~~~p~~  148 (200)
T PRK13540         78 FVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDY---------PCGLLSSGQKRQVALLRLWMSKAKL  148 (200)
T ss_pred             EeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhC---------ChhhcCHHHHHHHHHHHHHhcCCCE
Confidence            999999886 589999998752111112233334444433332221         2257999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEE
Q 020527          239 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVV  291 (325)
Q Consensus       239 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~  291 (325)
                      |||||||++||+.+++.+.+.|+++++   .|.|+|++||+.+.+..||.-.+
T Consensus       149 lilDEP~~~LD~~~~~~l~~~l~~~~~---~~~tiii~sh~~~~~~~~d~~~~  198 (200)
T PRK13540        149 WLLDEPLVALDELSLLTIITKIQEHRA---KGGAVLLTSHQDLPLNKADYEEY  198 (200)
T ss_pred             EEEeCCCcccCHHHHHHHHHHHHHHHH---cCCEEEEEeCCchhccccchhhc
Confidence            999999999999999999999999854   37899999999999988987543

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=100.00  E-value=5.9e-47  Score=332.35  Aligned_cols=184  Identities=34%  Similarity=0.559  Sum_probs=161.0

Q ss_pred             cEEEEEEEEECCCC---CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCC--CCCCCeEEECCEeCCCCCHHH
Q 020527           79 HVQFVNISFHYPSR---PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY--EPSDGQIYIDGFPLTDLDIRW  153 (325)
Q Consensus        79 ~i~~~~v~~~y~~~---~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~--~~~~G~I~i~g~~i~~~~~~~  153 (325)
                      .|+++||+++|++.   ...++|+|+||+|++||+++|+||||||||||+++|+|++  +|++|+|.++|+++..   ..
T Consensus         3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~   79 (194)
T cd03213           3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS   79 (194)
T ss_pred             EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence            38999999999741   0146999999999999999999999999999999999999  9999999999998763   25


Q ss_pred             HhcceEEEccCCcCcc-ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 020527          154 LREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI  232 (325)
Q Consensus       154 ~r~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral  232 (325)
                      +++.++|+||++.+|+ .|++||+.++..       .       .                   .||||||||++|||||
T Consensus        80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~-------~-------~-------------------~LS~G~~qrv~laral  126 (194)
T cd03213          80 FRKIIGYVPQDDILHPTLTVRETLMFAAK-------L-------R-------------------GLSGGERKRVSIALEL  126 (194)
T ss_pred             hhheEEEccCcccCCCCCcHHHHHHHHHH-------h-------c-------------------cCCHHHHHHHHHHHHH
Confidence            5778999999998875 799999975310       0       0                   4999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCch-HHH-hcCEEEEEeCCEEEEEc
Q 020527          233 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS-TIK-AVDRIVVIDDGRIIEVG  301 (325)
Q Consensus       233 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~-~~~-~~d~v~~l~~G~i~~~g  301 (325)
                      +.+|+++||||||++||+.+++.+.+.|+++.+   +|+|+|++||+++ .+. .||++++|++|++++.|
T Consensus       127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~---~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~  194 (194)
T cd03213         127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD---TGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG  194 (194)
T ss_pred             HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence            999999999999999999999999999999864   3789999999996 564 59999999999997653

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=100.00  E-value=5.9e-47  Score=329.05  Aligned_cols=173  Identities=30%  Similarity=0.558  Sum_probs=155.9

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCH-HHHhcc
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREK  157 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~-~~~r~~  157 (325)
                      .|+++|++++|       +++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ...+++
T Consensus         4 ~l~~~~l~~~~-------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   76 (182)
T cd03215           4 VLEVRGLSVKG-------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG   76 (182)
T ss_pred             EEEEeccEEEe-------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence            48999999988       7999999999999999999999999999999999999999999999999877653 345778


Q ss_pred             eEEEccCC---cCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 020527          158 IGFVGQEP---QLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL  233 (325)
Q Consensus       158 i~~v~Q~~---~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~  233 (325)
                      ++|+||++   .++ ..|++||+.++..                                    ||||||||++|||||+
T Consensus        77 i~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~la~al~  120 (182)
T cd03215          77 IAYVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVVLARWLA  120 (182)
T ss_pred             eEEecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHHHHHHHc
Confidence            99999995   344 5799999976410                                    7999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEE
Q 020527          234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI  297 (325)
Q Consensus       234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i  297 (325)
                      .+|+++||||||++||+.+++.+.+.++++++   ++.|+|++||+++.+.. ||++++|++|++
T Consensus       121 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~~tiii~sh~~~~~~~~~d~v~~l~~G~i  182 (182)
T cd03215         121 RDPRVLILDEPTRGVDVGAKAEIYRLIRELAD---AGKAVLLISSELDELLGLCDRILVMYEGRI  182 (182)
T ss_pred             cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence            99999999999999999999999999999864   37899999999998865 999999999974

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=3e-47  Score=314.86  Aligned_cols=216  Identities=30%  Similarity=0.478  Sum_probs=184.0

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCC--CCC----HH
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT--DLD----IR  152 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~--~~~----~~  152 (325)
                      .|+++|+++.|+..   ++|.||+|+.++||.+.++||||+|||||+|.+.-+.-|.+|+..|-|....  ..+    ..
T Consensus         2 sirv~~in~~yg~~---q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~   78 (242)
T COG4161           2 SIQLNGINCFYGAH---QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR   78 (242)
T ss_pred             ceEEcccccccccc---hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHH
Confidence            48999999999864   6999999999999999999999999999999999999999999999886542  221    34


Q ss_pred             HHhcceEEEccCCcCc-cccHHHHHhcC------CCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527          153 WLREKIGFVGQEPQLL-QMDIKSNIMYG------CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR  225 (325)
Q Consensus       153 ~~r~~i~~v~Q~~~l~-~~tv~enl~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR  225 (325)
                      ++|+.+|+|||+.+++ .+||.||+.-.      ........+..+.+++..+.++.+++|         -.|||||+||
T Consensus        79 ~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p---------lhlsggqqqr  149 (242)
T COG4161          79 DLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP---------LHLSGGQQQR  149 (242)
T ss_pred             HHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCc---------eecccchhhh
Confidence            6899999999999998 58999998643      111111223445566666677777776         3599999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChH
Q 020527          226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA  304 (325)
Q Consensus       226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~  304 (325)
                      |+|||||+.+|++|++||||++|||+-..++.++++++..   .|.|-++|||..+.++. +.||++|++|+|++.|+..
T Consensus       150 vaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~---tgitqvivthev~va~k~as~vvyme~g~ive~g~a~  226 (242)
T COG4161         150 VAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAE---TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS  226 (242)
T ss_pred             HHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHh---cCceEEEEEeehhHHHhhhhheEeeecCeeEeecchh
Confidence            9999999999999999999999999999999999999975   59999999999999976 9999999999999999988


Q ss_pred             HHhhc
Q 020527          305 ELLHK  309 (325)
Q Consensus       305 ~l~~~  309 (325)
                      .+-+.
T Consensus       227 ~ft~p  231 (242)
T COG4161         227 CFTEP  231 (242)
T ss_pred             hccCc
Confidence            76544

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=100.00  E-value=8.2e-47  Score=378.14  Aligned_cols=220  Identities=30%  Similarity=0.449  Sum_probs=176.9

Q ss_pred             cEEEEEEEEECCCC-CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-----CCCeEEECCEeCCCCCHH
Q 020527           79 HVQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDLDIR  152 (325)
Q Consensus        79 ~i~~~~v~~~y~~~-~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-----~~G~I~i~g~~i~~~~~~  152 (325)
                      +|+++|++++|++. ..+++|+|+||+|++||+++|+||||||||||+|+|+|+++|     ++|+|.++|+++...+..
T Consensus         5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~   84 (529)
T PRK15134          5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ   84 (529)
T ss_pred             eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence            48999999999631 123699999999999999999999999999999999999987     799999999998765533


Q ss_pred             H---Hh-cceEEEccCCc--Cc-cccHHHHHhcCC--CCCCC----HHHHHHHHHHcCHHH---HHHhCCCCcccccCCC
Q 020527          153 W---LR-EKIGFVGQEPQ--LL-QMDIKSNIMYGC--PKDVK----NEDIEWAAKQAYVHE---FILSLPCGYETLVDDD  216 (325)
Q Consensus       153 ~---~r-~~i~~v~Q~~~--l~-~~tv~enl~~~~--~~~~~----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  216 (325)
                      .   +| +++||+||++.  ++ ..|+.+|+.+..  .....    .+++.++++.+++.+   ..++         ...
T Consensus        85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---------~~~  155 (529)
T PRK15134         85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTD---------YPH  155 (529)
T ss_pred             HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhh---------CCc
Confidence            2   33 57999999985  44 368999986421  00111    122333444444422   1222         236


Q ss_pred             CCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCC
Q 020527          217 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG  295 (325)
Q Consensus       217 ~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G  295 (325)
                      +|||||||||+|||||+.+|++|||||||++||+.++..+.++|++++++  .|+|||+||||++.+.. ||||++|++|
T Consensus       156 ~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tvi~vtHd~~~~~~~~dri~~l~~G  233 (529)
T PRK15134        156 QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQE--LNMGLLFITHNLSIVRKLADRVAVMQNG  233 (529)
T ss_pred             ccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHh--cCCeEEEEcCcHHHHHHhcCEEEEEECC
Confidence            79999999999999999999999999999999999999999999998653  37899999999999864 9999999999


Q ss_pred             EEEEEcChHHHhhc
Q 020527          296 RIIEVGNHAELLHK  309 (325)
Q Consensus       296 ~i~~~g~~~~l~~~  309 (325)
                      ++++.|++++++..
T Consensus       234 ~i~~~g~~~~~~~~  247 (529)
T PRK15134        234 RCVEQNRAATLFSA  247 (529)
T ss_pred             EEEEeCCHHHHhhC
Confidence            99999999988653

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=100.00  E-value=5e-47  Score=341.30  Aligned_cols=193  Identities=32%  Similarity=0.466  Sum_probs=160.1

Q ss_pred             eeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCcc-ccHHHHH
Q 020527           98 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNI  176 (325)
Q Consensus        98 L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~tv~enl  176 (325)
                      |+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.     ..+|+||++.+|+ .|++||+
T Consensus         1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l   75 (230)
T TIGR01184         1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI   75 (230)
T ss_pred             CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence            579999999999999999999999999999999999999999999999865432     2489999998885 7999999


Q ss_pred             hcCCC---CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCC
Q 020527          177 MYGCP---KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD  249 (325)
Q Consensus       177 ~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD  249 (325)
                      .++..   .....    +.+.+.++..++.+..++.+         .+||||||||++|||||+.+|++|||||||++||
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD  146 (230)
T TIGR01184        76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRP---------GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALD  146 (230)
T ss_pred             HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCCh---------hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCC
Confidence            76421   11111    12334455555544443332         5799999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHH
Q 020527          250 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL  306 (325)
Q Consensus       250 ~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l  306 (325)
                      +.+++.+.+.|.++.++  .|+|||++|||++.+.. ||++++|++|++++.|++.++
T Consensus       147 ~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  202 (230)
T TIGR01184       147 ALTRGNLQEELMQIWEE--HRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV  202 (230)
T ss_pred             HHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence            99999999999998653  47899999999998865 999999999999998877555

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5e-47  Score=376.54  Aligned_cols=215  Identities=26%  Similarity=0.382  Sum_probs=175.8

Q ss_pred             EEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCH-HHHhcceEE
Q 020527           82 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREKIGF  160 (325)
Q Consensus        82 ~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~-~~~r~~i~~  160 (325)
                      ++|++++|++   .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+++.++|
T Consensus         1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~   77 (491)
T PRK10982          1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM   77 (491)
T ss_pred             CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence            3689999974   359999999999999999999999999999999999999999999999999865543 345678999


Q ss_pred             EccCCcCc-cccHHHHHhcCCCC--C--CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 020527          161 VGQEPQLL-QMDIKSNIMYGCPK--D--VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD  235 (325)
Q Consensus       161 v~Q~~~l~-~~tv~enl~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~  235 (325)
                      +||++.++ ..||+||+.++...  .  ......     ...+.++++.+...........+|||||||||+|||||+.+
T Consensus        78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~  152 (491)
T PRK10982         78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKM-----YRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYN  152 (491)
T ss_pred             EecccccccCCCHHHHhhcccccccccccCHHHH-----HHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhC
Confidence            99999876 57999999875321  1  011111     11233445554332222223467999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHh
Q 020527          236 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL  307 (325)
Q Consensus       236 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~  307 (325)
                      |++|||||||++||+.++..+.+.|+++++   .|+|||++|||++.+.. ||++++|++|++++.|+++++.
T Consensus       153 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  222 (491)
T PRK10982        153 AKIVIMDEPTSSLTEKEVNHLFTIIRKLKE---RGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT  222 (491)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence            999999999999999999999999999864   47899999999999865 9999999999999999988763

>PTZ00243 ABC transporter; Provisional

Probab=100.00  E-value=8.3e-46  Score=406.28  Aligned_cols=295  Identities=22%  Similarity=0.342  Sum_probs=238.9

Q ss_pred             eehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCc----c--c---------c
Q 020527            4 LLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQ----F--L---------S   68 (325)
Q Consensus         4 ~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~----~--~---------~   68 (325)
                      .+++|.+..|.+|++.+++++.++..+..|+..+...+..+.++.++++|+.++++.++...    .  .         .
T Consensus       487 ~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~  566 (1560)
T PTZ00243        487 VFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQDMEEYWREQREHST  566 (1560)
T ss_pred             HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccchhhccccccccc
Confidence            45778888999999999999999999999999999999999999999999999997654100    0  0         0


Q ss_pred             --c------c--------cc---------------------------ccCCcccEEEEEEEEECCC--------------
Q 020527           69 --E------G--------VK---------------------------LQRLMGHVQFVNISFHYPS--------------   91 (325)
Q Consensus        69 --~------~--------~~---------------------------~~~~~~~i~~~~v~~~y~~--------------   91 (325)
                        .      +        .+                           .......+.++|+++.++.              
T Consensus       567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  646 (1560)
T PTZ00243        567 ACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPSSASRHIVEGGTGGG  646 (1560)
T ss_pred             ccccccccccccccccccccccccccccccccccchhhcccccccccccccccccccccccccccccccccccccccccc
Confidence              0      0        00                           0000013556666654320              


Q ss_pred             -----------------------CCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCC
Q 020527           92 -----------------------RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD  148 (325)
Q Consensus        92 -----------------------~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~  148 (325)
                                             ..++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+.      
T Consensus       647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~------  720 (1560)
T PTZ00243        647 HEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE------  720 (1560)
T ss_pred             ccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC------
Confidence                                   012358999999999999999999999999999999999999999999862      


Q ss_pred             CCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHH
Q 020527          149 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRI  226 (325)
Q Consensus       149 ~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq~QRv  226 (325)
                             ++|+|+||+|.+|++|++||+.++..  ...+...++.+.+++++.++.+|.|+.+.++  +.+|||||||||
T Consensus       721 -------~~i~yv~Q~~~l~~~Tv~enI~~~~~--~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRv  791 (1560)
T PTZ00243        721 -------RSIAYVPQQAWIMNATVRGNILFFDE--EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARV  791 (1560)
T ss_pred             -------CeEEEEeCCCccCCCcHHHHHHcCCh--hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHH
Confidence                   46999999999999999999998732  2344566677778888999999888887665  468999999999


Q ss_pred             HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHH-HHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHH
Q 020527          227 AIARAILRDPAILLLDEATSALDSESEHYVKGVL-HALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAE  305 (325)
Q Consensus       227 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l-~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~  305 (325)
                      +|||||+.+|+++||||||++||+.+.+.+++.+ ....    .|+|+|++||+++.+..||+|++|++|++++.|++++
T Consensus       792 aLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~----~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~  867 (1560)
T PTZ00243        792 SLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGAL----AGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSAD  867 (1560)
T ss_pred             HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhh----CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHH
Confidence            9999999999999999999999999988887643 3222    3789999999999998899999999999999999999


Q ss_pred             HhhcCHHHHHHHH
Q 020527          306 LLHKGRLYAKLVK  318 (325)
Q Consensus       306 l~~~~~~~~~~~~  318 (325)
                      ++... .|.++..
T Consensus       868 l~~~~-~~~~~~~  879 (1560)
T PTZ00243        868 FMRTS-LYATLAA  879 (1560)
T ss_pred             HHhCh-HHHHHHH
Confidence            98653 4666554

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.3e-46  Score=374.40  Aligned_cols=214  Identities=28%  Similarity=0.413  Sum_probs=175.5

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCH-HHHhcc
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREK  157 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~-~~~r~~  157 (325)
                      .|+++|++++|+++   ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..++++
T Consensus         4 ~l~~~~l~~~~~~~---~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~   80 (501)
T PRK11288          4 YLSFDGIGKTFPGV---KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG   80 (501)
T ss_pred             eEEEeeeEEEECCE---EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence            48999999999753   59999999999999999999999999999999999999999999999999865443 345778


Q ss_pred             eEEEccCCcCcc-ccHHHHHhcCCCCC----CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 020527          158 IGFVGQEPQLLQ-MDIKSNIMYGCPKD----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI  232 (325)
Q Consensus       158 i~~v~Q~~~l~~-~tv~enl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral  232 (325)
                      |+|+||++.+++ .||+||+.++....    ......     ...+.++++.+...........+||||||||++|||||
T Consensus        81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral  155 (501)
T PRK11288         81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLL-----NYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKAL  155 (501)
T ss_pred             EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHH-----HHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHH
Confidence            999999998874 79999998753211    111111     11233455554433222233467999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcCh
Q 020527          233 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH  303 (325)
Q Consensus       233 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~  303 (325)
                      +.+|++|||||||++||+.++..+.+.|+++++   +|+|||++|||++.+.. ||++++|++|+++..+++
T Consensus       156 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~  224 (501)
T PRK11288        156 ARNARVIAFDEPTSSLSAREIEQLFRVIRELRA---EGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD  224 (501)
T ss_pred             HhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence            999999999999999999999999999999864   47899999999999865 999999999999877654

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=100.00  E-value=7.3e-47  Score=327.88  Aligned_cols=178  Identities=37%  Similarity=0.571  Sum_probs=155.4

Q ss_pred             EEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 020527           81 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF  160 (325)
Q Consensus        81 ~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~  160 (325)
                      +++|++++|++   .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus         1 ~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~   77 (180)
T cd03214           1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAY   77 (180)
T ss_pred             CeeEEEEEECC---eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhH
Confidence            47899999975   359999999999999999999999999999999999999999999999999987776667778999


Q ss_pred             EccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEE
Q 020527          161 VGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILL  240 (325)
Q Consensus       161 v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~lll  240 (325)
                      +||                            +++..++.+.+++.+         ..||||||||++|||||+.+|+++|
T Consensus        78 ~~q----------------------------~l~~~gl~~~~~~~~---------~~LS~G~~qrl~laral~~~p~lll  120 (180)
T cd03214          78 VPQ----------------------------ALELLGLAHLADRPF---------NELSGGERQRVLLARALAQEPPILL  120 (180)
T ss_pred             HHH----------------------------HHHHcCCHhHhcCCc---------ccCCHHHHHHHHHHHHHhcCCCEEE
Confidence            998                            333444444443322         5699999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEE
Q 020527          241 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEV  300 (325)
Q Consensus       241 lDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~  300 (325)
                      |||||++||+.++..+.+.+.+++++  .+.|+|++||+++.+. .||++++|++|++++.
T Consensus       121 lDEP~~~LD~~~~~~~~~~l~~~~~~--~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~  179 (180)
T cd03214         121 LDEPTSHLDIAHQIELLELLRRLARE--RGKTVVMVLHDLNLAARYADRVILLKDGRIVAQ  179 (180)
T ss_pred             EeCCccCCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEec
Confidence            99999999999999999999998642  2689999999999985 5999999999999764

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=100.00  E-value=6.7e-47  Score=378.75  Aligned_cols=219  Identities=30%  Similarity=0.500  Sum_probs=177.7

Q ss_pred             cEEEEEEEEECCCC--------CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCC
Q 020527           79 HVQFVNISFHYPSR--------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD  150 (325)
Q Consensus        79 ~i~~~~v~~~y~~~--------~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~  150 (325)
                      .|+++|++++|+..        ..+.+|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|+++|+++...+
T Consensus       275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~  353 (529)
T PRK15134        275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLN  353 (529)
T ss_pred             cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccc
Confidence            48999999999521        02469999999999999999999999999999999999995 8999999999986554


Q ss_pred             HH---HHhcceEEEccCC--cCc-cccHHHHHhcCCCCC---CC----HHHHHHHHHHcCHH-HHHHhCCCCcccccCCC
Q 020527          151 IR---WLREKIGFVGQEP--QLL-QMDIKSNIMYGCPKD---VK----NEDIEWAAKQAYVH-EFILSLPCGYETLVDDD  216 (325)
Q Consensus       151 ~~---~~r~~i~~v~Q~~--~l~-~~tv~enl~~~~~~~---~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  216 (325)
                      ..   .++++++|+||++  .++ ..||+||+.++....   ..    .+.+.++++..++. +..++         ...
T Consensus       354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~  424 (529)
T PRK15134        354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHR---------YPA  424 (529)
T ss_pred             hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhc---------CCc
Confidence            32   2467899999997  356 479999998742100   11    11223334444442 22222         236


Q ss_pred             CCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCC
Q 020527          217 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG  295 (325)
Q Consensus       217 ~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G  295 (325)
                      +|||||||||+|||||+.+|++|||||||++||+.++..+.++|++++++  .|+|||+||||++.+.. ||++++|++|
T Consensus       425 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tvi~vsHd~~~~~~~~d~i~~l~~G  502 (529)
T PRK15134        425 EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQK--HQLAYLFISHDLHVVRALCHQVIVLRQG  502 (529)
T ss_pred             cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHh--hCCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence            79999999999999999999999999999999999999999999999753  37899999999999865 9999999999


Q ss_pred             EEEEEcChHHHhhc
Q 020527          296 RIIEVGNHAELLHK  309 (325)
Q Consensus       296 ~i~~~g~~~~l~~~  309 (325)
                      ++++.|+++++++.
T Consensus       503 ~i~~~~~~~~~~~~  516 (529)
T PRK15134        503 EVVEQGDCERVFAA  516 (529)
T ss_pred             EEEEEcCHHHHhcC
Confidence            99999999998764

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=100.00  E-value=2.1e-46  Score=330.29  Aligned_cols=184  Identities=31%  Similarity=0.466  Sum_probs=160.9

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcC--CCCCCCeEEECCEeCCCCCHHHH-hc
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWL-RE  156 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl--~~~~~G~I~i~g~~i~~~~~~~~-r~  156 (325)
                      ++++|++++|++   +++++|+||++++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++...+.... +.
T Consensus         1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~   77 (200)
T cd03217           1 LEIKDLHVSVGG---KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARL   77 (200)
T ss_pred             CeEEEEEEEeCC---EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhC
Confidence            468999999974   3599999999999999999999999999999999999  58999999999999987665443 45


Q ss_pred             ceEEEccCCcCcc-ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 020527          157 KIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD  235 (325)
Q Consensus       157 ~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~  235 (325)
                      .++|+||++.+++ .++++++                          ...+         .+|||||+||++|||||+.+
T Consensus        78 ~i~~v~q~~~~~~~~~~~~~l--------------------------~~~~---------~~LS~G~~qrv~laral~~~  122 (200)
T cd03217          78 GIFLAFQYPPEIPGVKNADFL--------------------------RYVN---------EGFSGGEKKRNEILQLLLLE  122 (200)
T ss_pred             cEEEeecChhhccCccHHHHH--------------------------hhcc---------ccCCHHHHHHHHHHHHHhcC
Confidence            6999999998875 5666665                          0111         35999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH--hcCEEEEEeCCEEEEEcChH
Q 020527          236 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK--AVDRIVVIDDGRIIEVGNHA  304 (325)
Q Consensus       236 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~--~~d~v~~l~~G~i~~~g~~~  304 (325)
                      |+++||||||++||+.++..+.+.|.++++   +++|+|++||+++.+.  .||++++|++|++++.|+.+
T Consensus       123 p~illlDEPt~~LD~~~~~~l~~~L~~~~~---~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~~~  190 (200)
T cd03217         123 PDLAILDEPDSGLDIDALRLVAEVINKLRE---EGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKE  190 (200)
T ss_pred             CCEEEEeCCCccCCHHHHHHHHHHHHHHHH---CCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEccHH
Confidence            999999999999999999999999999864   3789999999999886  69999999999999998443

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=5.9e-48  Score=320.65  Aligned_cols=205  Identities=27%  Similarity=0.468  Sum_probs=172.3

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      ++++++.+.-++   .++|+|+||++.+||+++|+||||||||||+|+++-|.+|++|+++|.|++++.+++..+|++|+
T Consensus         4 le~kq~~y~a~~---a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~Vs   80 (223)
T COG4619           4 LELKQVGYLAGD---AKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVS   80 (223)
T ss_pred             hHHHHHHhhcCC---CeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHH
Confidence            456666544433   47999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCcCccccHHHHHhcCCC---CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 020527          160 FVGQEPQLLQMDIKSNIMYGCP---KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP  236 (325)
Q Consensus       160 ~v~Q~~~l~~~tv~enl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p  236 (325)
                      |+.|.|.||..||+||+.|+..   .+.+.......+.++++.+..-..        ...+||||||||++|+|-|.--|
T Consensus        81 Y~~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k--------~it~lSGGE~QriAliR~Lq~~P  152 (223)
T COG4619          81 YCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTK--------NITELSGGEKQRIALIRNLQFMP  152 (223)
T ss_pred             HHHcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcc--------hhhhccchHHHHHHHHHHhhcCC
Confidence            9999999999999999998631   222233333344444443322111        12579999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHH-HhcCEEEEEeCCEE
Q 020527          237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRI  297 (325)
Q Consensus       237 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~-~~~d~v~~l~~G~i  297 (325)
                      +|||||||||+||+.+++.+.+++.++.++  +..++++||||.+.. +.+|+++.+..|++
T Consensus       153 ~ILLLDE~TsALD~~nkr~ie~mi~~~v~~--q~vAv~WiTHd~dqa~rha~k~itl~~G~~  212 (223)
T COG4619         153 KILLLDEITSALDESNKRNIEEMIHRYVRE--QNVAVLWITHDKDQAIRHADKVITLQPGHA  212 (223)
T ss_pred             ceEEecCchhhcChhhHHHHHHHHHHHhhh--hceEEEEEecChHHHhhhhheEEEeccCcc
Confidence            999999999999999999999999999763  688999999999985 67999999999976

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=100.00  E-value=8.7e-47  Score=330.72  Aligned_cols=183  Identities=25%  Similarity=0.472  Sum_probs=159.7

Q ss_pred             cEEEEEEEEECCCCC-CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCC--CCCCCeEEECCEeCCCCCHHHHh
Q 020527           79 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY--EPSDGQIYIDGFPLTDLDIRWLR  155 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~-~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~--~~~~G~I~i~g~~i~~~~~~~~r  155 (325)
                      .|+++|+++.|++.. .+++|+++||+|++||+++|+||||||||||+++|+|++  +|++|+|.++|+++.    ..++
T Consensus         3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~   78 (192)
T cd03232           3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ   78 (192)
T ss_pred             EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence            489999999996411 136999999999999999999999999999999999986  489999999999874    3456


Q ss_pred             cceEEEccCCcCcc-ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 020527          156 EKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR  234 (325)
Q Consensus       156 ~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~  234 (325)
                      +.++|++|++.+++ .|++||+.++.       .    .+                      +|||||+||++||||++.
T Consensus        79 ~~i~~~~q~~~~~~~~tv~~~l~~~~-------~----~~----------------------~LSgGe~qrv~la~al~~  125 (192)
T cd03232          79 RSTGYVEQQDVHSPNLTVREALRFSA-------L----LR----------------------GLSVEQRKRLTIGVELAA  125 (192)
T ss_pred             hceEEecccCccccCCcHHHHHHHHH-------H----Hh----------------------cCCHHHhHHHHHHHHHhc
Confidence            78999999998875 79999998631       0    00                      499999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchH-H-HhcCEEEEEeC-CEEEEEc
Q 020527          235 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST-I-KAVDRIVVIDD-GRIIEVG  301 (325)
Q Consensus       235 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~-~-~~~d~v~~l~~-G~i~~~g  301 (325)
                      +|+++|+||||++||+.++..+.+.++++++   .|+|+|++||+++. + ..||++++|++ |++++.|
T Consensus       126 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~---~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g  192 (192)
T cd03232         126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLAD---SGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG  192 (192)
T ss_pred             CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHH---cCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence            9999999999999999999999999999864   37899999999984 5 56999999999 9998754

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=100.00  E-value=2.3e-46  Score=340.20  Aligned_cols=221  Identities=25%  Similarity=0.313  Sum_probs=168.2

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCC--CCCCCeEEECCEeCCCCCHHHH-hc
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY--EPSDGQIYIDGFPLTDLDIRWL-RE  156 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~--~~~~G~I~i~g~~i~~~~~~~~-r~  156 (325)
                      |+++|++++|+++   ++|+|+||+|++||+++|+||||||||||+++|+|++  +|++|+|.++|.++...+.... ++
T Consensus         2 i~~~nl~~~~~~~---~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~   78 (248)
T PRK09580          2 LSIKDLHVSVEDK---AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE   78 (248)
T ss_pred             eEEEEEEEEeCCe---eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence            7899999999753   5999999999999999999999999999999999995  6999999999998876655443 35


Q ss_pred             ceEEEccCCcCcc-ccHHHHHhcCCC--CCC-CHHHHHHHHHHcCHHHHHHhCCC--CcccccCCCCCChHHHHHHHHHH
Q 020527          157 KIGFVGQEPQLLQ-MDIKSNIMYGCP--KDV-KNEDIEWAAKQAYVHEFILSLPC--GYETLVDDDLLSGGQKQRIAIAR  230 (325)
Q Consensus       157 ~i~~v~Q~~~l~~-~tv~enl~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~LSgGq~QRv~iAr  230 (325)
                      .++|++|++.+++ .|..+++.+...  ... .............+.+.++.+..  ++.+......||||||||++|||
T Consensus        79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~lar  158 (248)
T PRK09580         79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQ  158 (248)
T ss_pred             ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHH
Confidence            7999999988764 465555432110  000 00000000000112223333222  11111111369999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh--cCEEEEEeCCEEEEEcChHHH
Q 020527          231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVIDDGRIIEVGNHAEL  306 (325)
Q Consensus       231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~--~d~v~~l~~G~i~~~g~~~~l  306 (325)
                      |++.+|++|||||||++||+.+++.+.+.|+++++   .++|||++|||++.+..  ||++++|++|++++.|+++.+
T Consensus       159 al~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~---~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~  233 (248)
T PRK09580        159 MAVLEPELCILDESDSGLDIDALKIVADGVNSLRD---GKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV  233 (248)
T ss_pred             HHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence            99999999999999999999999999999999864   37899999999999865  899999999999999988754

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.5e-46  Score=363.68  Aligned_cols=219  Identities=31%  Similarity=0.426  Sum_probs=180.6

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHH-Hhcc
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK  157 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~-~r~~  157 (325)
                      .++++|++|+|++   .++|++|||++.+||++||+|.||||||||+|+|+|.|+|++|+|+++|+++.-.++.+ ....
T Consensus         8 ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G   84 (500)
T COG1129           8 LLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG   84 (500)
T ss_pred             eeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence            4899999999986   47999999999999999999999999999999999999999999999999988666654 4567


Q ss_pred             eEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 020527          158 IGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP  236 (325)
Q Consensus       158 i~~v~Q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p  236 (325)
                      |+.|+|+..|+ ++||.||+.+|..+.....-+++..-.....++++++...........+||.||||.|+||||+..++
T Consensus        85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~a  164 (500)
T COG1129          85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDA  164 (500)
T ss_pred             cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCC
Confidence            99999999998 68999999988543221000111111112334455544332222223679999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcCh
Q 020527          237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH  303 (325)
Q Consensus       237 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~  303 (325)
                      +|+|||||||+|+....+.++++++++++   +|.++|+|||+++++.. ||||.||++|+.+...+.
T Consensus       165 rllIlDEPTaaLt~~E~~~Lf~~ir~Lk~---~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~  229 (500)
T COG1129         165 RVLILDEPTAALTVKETERLFDLIRRLKA---QGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPT  229 (500)
T ss_pred             CEEEEcCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeeccc
Confidence            99999999999999999999999999985   59999999999999865 999999999999988773

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.8e-46  Score=373.28  Aligned_cols=217  Identities=26%  Similarity=0.432  Sum_probs=177.4

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC--CCCeEEECCEeCCCCCHHH-Hhc
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDGQIYIDGFPLTDLDIRW-LRE  156 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~--~~G~I~i~g~~i~~~~~~~-~r~  156 (325)
                      |+++|++++|++   .++|+|+||+|++||+++|+||||||||||+++|+|+++|  ++|+|.++|+++...+... .++
T Consensus         2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~   78 (500)
T TIGR02633         2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA   78 (500)
T ss_pred             EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence            789999999964   3599999999999999999999999999999999999987  7999999999987665443 456


Q ss_pred             ceEEEccCCcCc-cccHHHHHhcCCCCC-----CCHHHHHHHHHHcCHHHHHHhCCCCccc-ccCCCCCChHHHHHHHHH
Q 020527          157 KIGFVGQEPQLL-QMDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCGYET-LVDDDLLSGGQKQRIAIA  229 (325)
Q Consensus       157 ~i~~v~Q~~~l~-~~tv~enl~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~LSgGq~QRv~iA  229 (325)
                      .++|+||++.++ ..|++||+.++....     ...+..     ...+.++++.+...... .....+|||||||||+||
T Consensus        79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA  153 (500)
T TIGR02633        79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAM-----YLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIA  153 (500)
T ss_pred             CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHH-----HHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHH
Confidence            799999999877 579999998753211     111111     11233455554432111 122467999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHh
Q 020527          230 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL  307 (325)
Q Consensus       230 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~  307 (325)
                      |||+.+|++|||||||++||+.++..+.+.|+++++   +|+|||+||||++.+.. ||+|++|++|+++..++++++.
T Consensus       154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  229 (500)
T TIGR02633       154 KALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA---HGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMS  229 (500)
T ss_pred             HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccCC
Confidence            999999999999999999999999999999999964   47899999999999865 9999999999999998877653

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=100.00  E-value=1.5e-46  Score=337.99  Aligned_cols=200  Identities=31%  Similarity=0.439  Sum_probs=161.6

Q ss_pred             ceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC----CCCeEEECCEeCCCCCHHHHhcceEEEccCCc-Cc--c
Q 020527           97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP----SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQ-LL--Q  169 (325)
Q Consensus        97 iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~----~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~-l~--~  169 (325)
                      +++|+||+|++||+++|+||||||||||+++|+|+++|    ++|+|.++|+++...  ...++.++|+||++. .|  .
T Consensus         1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~   78 (230)
T TIGR02770         1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL   78 (230)
T ss_pred             CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence            57999999999999999999999999999999999999    899999999988643  222357999999985 34  3


Q ss_pred             ccHHHHHhcCCCC-CC-C---HHHHHHHHHHcCHH---HHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEE
Q 020527          170 MDIKSNIMYGCPK-DV-K---NEDIEWAAKQAYVH---EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLL  241 (325)
Q Consensus       170 ~tv~enl~~~~~~-~~-~---~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llll  241 (325)
                      .|+++|+.+.... .. .   .+.+.+.++..++.   ...++         ....|||||||||+|||||+.+|++|||
T Consensus        79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~~LS~G~~qrv~laral~~~p~vllL  149 (230)
T TIGR02770        79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKK---------YPFQLSGGMLQRVMIALALLLEPPFLIA  149 (230)
T ss_pred             cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhC---------ChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence            6999998653110 01 1   11233334443332   11221         2357999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhc
Q 020527          242 DEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK  309 (325)
Q Consensus       242 DEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~  309 (325)
                      ||||++||+.++..+.+.|++++++  .|+|||++||+++.+.. ||++++|++|++++.|++++++..
T Consensus       150 DEPt~~LD~~~~~~l~~~l~~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  216 (230)
T TIGR02770       150 DEPTTDLDVVNQARVLKLLRELRQL--FGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN  216 (230)
T ss_pred             cCCccccCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence            9999999999999999999998652  37899999999999864 999999999999999999998754

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.4e-47  Score=323.18  Aligned_cols=210  Identities=30%  Similarity=0.453  Sum_probs=173.3

Q ss_pred             cccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhc
Q 020527           77 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE  156 (325)
Q Consensus        77 ~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~  156 (325)
                      |.++.+++++.+|++++ ..+|+|+|++|.+||.++++|||||||||||++++|+.+|+.|+|.+||+++..-..     
T Consensus         1 M~~l~~~~~sl~y~g~~-~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga-----   74 (259)
T COG4525           1 MCMLNVSHLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA-----   74 (259)
T ss_pred             CceeehhheEEecCCcc-hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc-----
Confidence            34588999999998763 569999999999999999999999999999999999999999999999999875432     


Q ss_pred             ceEEEccCCcCc-cccHHHHHhcCCCCC-CCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527          157 KIGFVGQEPQLL-QMDIKSNIMYGCPKD-VKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR  230 (325)
Q Consensus       157 ~i~~v~Q~~~l~-~~tv~enl~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr  230 (325)
                      .-|.|||++.|+ ..|+.||++||.... ..+    +...+.+..+++.++-++.         .-+|||||||||.|||
T Consensus        75 ergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~---------i~qLSGGmrQRvGiAR  145 (259)
T COG4525          75 ERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKY---------IWQLSGGMRQRVGIAR  145 (259)
T ss_pred             cceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccc---------eEeecchHHHHHHHHH
Confidence            248999999998 589999999985321 111    1222333344444332222         2479999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEe--CCEEEEEcCh
Q 020527          231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID--DGRIIEVGNH  303 (325)
Q Consensus       231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~--~G~i~~~g~~  303 (325)
                      ||+.+|++|+||||+++||.-+++++.++|.++-++  .|+.+++||||++++-. ++|+++|.  .|+|++.-++
T Consensus       146 ALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~--tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~  219 (259)
T COG4525         146 ALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQE--TGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPL  219 (259)
T ss_pred             HhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHH--hCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCC
Confidence            999999999999999999999999999999887654  58999999999999865 99999998  5789876544

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=100.00  E-value=1.3e-46  Score=375.95  Aligned_cols=215  Identities=26%  Similarity=0.425  Sum_probs=173.4

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCC--CCCCCeEEEC---------------
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY--EPSDGQIYID---------------  142 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~--~~~~G~I~i~---------------  142 (325)
                      |+++|++++|++   +.+|+|+||+|++||+++|+||||||||||+|+|+|++  +|++|+|.++               
T Consensus         1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~   77 (520)
T TIGR03269         1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK   77 (520)
T ss_pred             CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence            478999999964   36999999999999999999999999999999999997  7999999997               


Q ss_pred             --------CEeCC-------CCC---HHHHhcceEEEccC-CcCc-cccHHHHHhcCCC-CCCC----HHHHHHHHHHcC
Q 020527          143 --------GFPLT-------DLD---IRWLREKIGFVGQE-PQLL-QMDIKSNIMYGCP-KDVK----NEDIEWAAKQAY  197 (325)
Q Consensus       143 --------g~~i~-------~~~---~~~~r~~i~~v~Q~-~~l~-~~tv~enl~~~~~-~~~~----~~~~~~~~~~~~  197 (325)
                              |.++.       ...   ...+|+.++|+||+ +.+| ..|++||+.++.. ....    .+++.++++.++
T Consensus        78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g  157 (520)
T TIGR03269        78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ  157 (520)
T ss_pred             cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence                    22221       111   12346789999998 5676 4799999986421 1111    123344455555


Q ss_pred             HHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEe
Q 020527          198 VHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIA  277 (325)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vt  277 (325)
                      +.+..++.+         .+|||||||||+|||||+.+|++|||||||++||+.++..+.++|+++.++  .|+|||+||
T Consensus       158 l~~~~~~~~---------~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tviivt  226 (520)
T TIGR03269       158 LSHRITHIA---------RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKA--SGISMVLTS  226 (520)
T ss_pred             ChhhhhcCc---------ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHh--cCcEEEEEe
Confidence            544444333         679999999999999999999999999999999999999999999998653  478999999


Q ss_pred             cCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527          278 HRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH  308 (325)
Q Consensus       278 H~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~  308 (325)
                      ||++.+.. ||++++|++|+++..|++++++.
T Consensus       227 Hd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  258 (520)
T TIGR03269       227 HWPEVIEDLSDKAIWLENGEIKEEGTPDEVVA  258 (520)
T ss_pred             CCHHHHHHhcCEEEEEeCCEEeeecCHHHHHH
Confidence            99999864 99999999999999999888754

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=100.00  E-value=1.7e-46  Score=375.13  Aligned_cols=223  Identities=25%  Similarity=0.423  Sum_probs=174.1

Q ss_pred             cEEEEEEEEECCC--CCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEEC-CEe---CCCCC--
Q 020527           79 HVQFVNISFHYPS--RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID-GFP---LTDLD--  150 (325)
Q Consensus        79 ~i~~~~v~~~y~~--~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~-g~~---i~~~~--  150 (325)
                      .|+++|++++|++  ....++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++ |.+   +...+  
T Consensus       279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~  358 (520)
T TIGR03269       279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD  358 (520)
T ss_pred             eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence            5999999999953  112369999999999999999999999999999999999999999999996 643   22222  


Q ss_pred             -HHHHhcceEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCc-----ccccCCCCCChHHH
Q 020527          151 -IRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGY-----ETLVDDDLLSGGQK  223 (325)
Q Consensus       151 -~~~~r~~i~~v~Q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~LSgGq~  223 (325)
                       ...++++++|+||++.++ ..||+||+.++..........     ...+.++++.+....     .......+||||||
T Consensus       359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~  433 (520)
T TIGR03269       359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELA-----RMKAVITLKMVGFDEEKAEEILDKYPDELSEGER  433 (520)
T ss_pred             hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHH-----HHHHHHHHHhCCCCCccchhhhhCChhhCCHHHH
Confidence             123466799999999887 479999997632111111110     011223344333211     01122367999999


Q ss_pred             HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcC
Q 020527          224 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN  302 (325)
Q Consensus       224 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~  302 (325)
                      |||+|||||+.+|++|||||||++||+.+++.+.+.|++++++  .|.|||+||||++.+.. |||+++|++|++++.|+
T Consensus       434 qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~  511 (520)
T TIGR03269       434 HRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREE--MEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGD  511 (520)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH--cCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence            9999999999999999999999999999999999999998653  47899999999999865 99999999999999999


Q ss_pred             hHHHhh
Q 020527          303 HAELLH  308 (325)
Q Consensus       303 ~~~l~~  308 (325)
                      +++++.
T Consensus       512 ~~~~~~  517 (520)
T TIGR03269       512 PEEIVE  517 (520)
T ss_pred             HHHHHh
Confidence            887753

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.6e-47  Score=376.08  Aligned_cols=226  Identities=24%  Similarity=0.409  Sum_probs=177.6

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC-CCCCeEEECCEeCCCCCH-HHHhc
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-PSDGQIYIDGFPLTDLDI-RWLRE  156 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~-~~~G~I~i~g~~i~~~~~-~~~r~  156 (325)
                      .|+++|++++|+.....++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...+. ...++
T Consensus       259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~  338 (506)
T PRK13549        259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ  338 (506)
T ss_pred             eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence            4899999999952112369999999999999999999999999999999999998 599999999998864433 34567


Q ss_pred             ceEEEccCC---cCc-cccHHHHHhcCCCCCCCH-HHHHHHHHHcCHHHHHHhCCCC-cccccCCCCCChHHHHHHHHHH
Q 020527          157 KIGFVGQEP---QLL-QMDIKSNIMYGCPKDVKN-EDIEWAAKQAYVHEFILSLPCG-YETLVDDDLLSGGQKQRIAIAR  230 (325)
Q Consensus       157 ~i~~v~Q~~---~l~-~~tv~enl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~LSgGq~QRv~iAr  230 (325)
                      .++|+||++   .++ ..|+.||+.++....... ...........+.++++.+... ........+|||||||||+|||
T Consensus       339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~  418 (506)
T PRK13549        339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAK  418 (506)
T ss_pred             CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHH
Confidence            899999996   355 579999998752100000 0000001112234455555432 1222334689999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHh
Q 020527          231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL  307 (325)
Q Consensus       231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~  307 (325)
                      ||+.+|++|||||||++||+.+++.+.++|.++++   +|+|||++|||++.+.. ||++++|++|+++..|+++++.
T Consensus       419 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  493 (506)
T PRK13549        419 CLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQ---QGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNLT  493 (506)
T ss_pred             HHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHH---CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccCC
Confidence            99999999999999999999999999999999875   38899999999999865 9999999999999999888763

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=2.2e-47  Score=334.36  Aligned_cols=215  Identities=23%  Similarity=0.480  Sum_probs=181.9

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .+++++|+|+|+++   .+++|+||++++|+++|++|||||||||.+|+|+|+++|++|+|.|+|.+++.    ..+.+|
T Consensus         2 ~L~ie~vtK~Fg~k---~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rI   74 (300)
T COG4152           2 ALEIEGVTKSFGDK---KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRI   74 (300)
T ss_pred             ceEEecchhccCce---eeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhc
Confidence            48999999999864   69999999999999999999999999999999999999999999999998753    346789


Q ss_pred             EEEccCCcCc-cccHHHHHhcCC-CCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 020527          159 GFVGQEPQLL-QMDIKSNIMYGC-PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP  236 (325)
Q Consensus       159 ~~v~Q~~~l~-~~tv~enl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p  236 (325)
                      ||+|.+.-|+ .+||.|.+.|-. .......++     +..+..|++++...........+||.|.+|++.+..|++++|
T Consensus        75 GyLPEERGLy~k~tv~dql~yla~LkGm~~~e~-----~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHeP  149 (300)
T COG4152          75 GYLPEERGLYPKMTVEDQLKYLAELKGMPKAEI-----QKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEP  149 (300)
T ss_pred             ccChhhhccCccCcHHHHHHHHHHhcCCcHHHH-----HHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCC
Confidence            9999999999 589999997631 111222222     123445666655433222223579999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527          237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH  308 (325)
Q Consensus       237 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~  308 (325)
                      +++|||||||||||.+.+.+.+.+.++++   +|+|||++||.|+.++. ||++++|++|+.|-+|+.+++.+
T Consensus       150 eLlILDEPFSGLDPVN~elLk~~I~~lk~---~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~  219 (300)
T COG4152         150 ELLILDEPFSGLDPVNVELLKDAIFELKE---EGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRR  219 (300)
T ss_pred             CEEEecCCccCCChhhHHHHHHHHHHHHh---cCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHH
Confidence            99999999999999999999999999975   59999999999999976 99999999999999999998865

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=3.5e-46  Score=332.18  Aligned_cols=198  Identities=24%  Similarity=0.320  Sum_probs=163.5

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .|+++|++++|+++   .+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...   ..++.+
T Consensus        11 ~l~~~~l~~~~~~~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i   84 (214)
T PRK13543         11 LLAAHALAFSRNEE---PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFM   84 (214)
T ss_pred             eEEEeeEEEecCCc---eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhce
Confidence            48999999999753   599999999999999999999999999999999999999999999999988642   235679


Q ss_pred             EEEccCCcCcc-ccHHHHHhcCCC--CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 020527          159 GFVGQEPQLLQ-MDIKSNIMYGCP--KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD  235 (325)
Q Consensus       159 ~~v~Q~~~l~~-~tv~enl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~  235 (325)
                      +|++|++.+++ .|++||+.+...  .....+...+.++..++.+..+..         ...||||||||++||||++.+
T Consensus        85 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~qrv~laral~~~  155 (214)
T PRK13543         85 AYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTL---------VRQLSAGQKKRLALARLWLSP  155 (214)
T ss_pred             EEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCC---------hhhCCHHHHHHHHHHHHHhcC
Confidence            99999998875 699999976421  111122233444444444333222         257999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeC
Q 020527          236 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD  294 (325)
Q Consensus       236 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~  294 (325)
                      |+++||||||++||+.+++.+.+.++++.+   +|.|+|++|||++.+.. ||++++++.
T Consensus       156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~~~~~i~~l~~  212 (214)
T PRK13543        156 APLWLLDEPYANLDLEGITLVNRMISAHLR---GGGAALVTTHGAYAAPPVRTRMLTLEA  212 (214)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEecChhhhhhhcceEEEEee
Confidence            999999999999999999999999999864   37899999999999865 999999864

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=100.00  E-value=4.5e-46  Score=318.96  Aligned_cols=164  Identities=36%  Similarity=0.537  Sum_probs=147.8

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      |+++|++++|+++  +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.           ++++
T Consensus         1 i~~~~~~~~~~~~--~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~   67 (166)
T cd03223           1 IELENLSLATPDG--RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLL   67 (166)
T ss_pred             CEEEEEEEEcCCC--CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEE
Confidence            4689999999642  36999999999999999999999999999999999999999999999873           5799


Q ss_pred             EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEE
Q 020527          160 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL  239 (325)
Q Consensus       160 ~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ll  239 (325)
                      |++|++.+++.|++||+.++                         .         ..+||||||||++|||||+.+|+++
T Consensus        68 ~~~q~~~~~~~tv~~nl~~~-------------------------~---------~~~LS~G~~~rv~laral~~~p~~l  113 (166)
T cd03223          68 FLPQRPYLPLGTLREQLIYP-------------------------W---------DDVLSGGEQQRLAFARLLLHKPKFV  113 (166)
T ss_pred             EECCCCccccccHHHHhhcc-------------------------C---------CCCCCHHHHHHHHHHHHHHcCCCEE
Confidence            99999988888999999763                         0         1469999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCE
Q 020527          240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR  296 (325)
Q Consensus       240 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~  296 (325)
                      ||||||++||+.+++.+.+.++++      +.|+|++|||++....||++++|+++-
T Consensus       114 llDEPt~~LD~~~~~~l~~~l~~~------~~tiiivsh~~~~~~~~d~i~~l~~~~  164 (166)
T cd03223         114 FLDEATSALDEESEDRLYQLLKEL------GITVISVGHRPSLWKFHDRVLDLDGEG  164 (166)
T ss_pred             EEECCccccCHHHHHHHHHHHHHh------CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence            999999999999999999999876      469999999998777799999998763

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=100.00  E-value=7.6e-46  Score=316.63  Aligned_cols=160  Identities=36%  Similarity=0.559  Sum_probs=147.1

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHH-HHhcce
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR-WLREKI  158 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~-~~r~~i  158 (325)
                      |+++|++++|+++   ++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..++.+
T Consensus         1 l~~~~l~~~~~~~---~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i   77 (163)
T cd03216           1 LELRGITKRFGGV---KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGI   77 (163)
T ss_pred             CEEEEEEEEECCe---EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCe
Confidence            4789999999753   599999999999999999999999999999999999999999999999998766543 456789


Q ss_pred             EEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCE
Q 020527          159 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI  238 (325)
Q Consensus       159 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~l  238 (325)
                      +|+||                                                      ||||||||++||||++.+|++
T Consensus        78 ~~~~q------------------------------------------------------LS~G~~qrl~laral~~~p~i  103 (163)
T cd03216          78 AMVYQ------------------------------------------------------LSVGERQMVEIARALARNARL  103 (163)
T ss_pred             EEEEe------------------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence            99998                                                      799999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEE
Q 020527          239 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIE  299 (325)
Q Consensus       239 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~  299 (325)
                      +||||||++||+.+++.+.+.++++++   ++.|+|++|||++.+.. ||++++|++|++++
T Consensus       104 lllDEP~~~LD~~~~~~l~~~l~~~~~---~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~  162 (163)
T cd03216         104 LILDEPTAALTPAEVERLFKVIRRLRA---QGVAVIFISHRLDEVFEIADRVTVLRDGRVVG  162 (163)
T ss_pred             EEEECCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence            999999999999999999999999864   37899999999998865 99999999999875

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.7e-46  Score=374.37  Aligned_cols=221  Identities=17%  Similarity=0.319  Sum_probs=174.1

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCH-HHHhcc
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREK  157 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~-~~~r~~  157 (325)
                      .|+++|+++.|.     .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+. ..++++
T Consensus       265 ~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~  339 (510)
T PRK09700        265 VFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG  339 (510)
T ss_pred             EEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCC
Confidence            499999998762     38999999999999999999999999999999999999999999999998865443 345678


Q ss_pred             eEEEccCC---cCc-cccHHHHHhcCCCCC---CCH-HHH-HHHHHHcCHHHHHHhCCCC-cccccCCCCCChHHHHHHH
Q 020527          158 IGFVGQEP---QLL-QMDIKSNIMYGCPKD---VKN-EDI-EWAAKQAYVHEFILSLPCG-YETLVDDDLLSGGQKQRIA  227 (325)
Q Consensus       158 i~~v~Q~~---~l~-~~tv~enl~~~~~~~---~~~-~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~LSgGq~QRv~  227 (325)
                      ++|+||++   .++ ..||+||+.++....   ... ... ........+.++++.+... ........+|||||||||+
T Consensus       340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~  419 (510)
T PRK09700        340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVL  419 (510)
T ss_pred             cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHH
Confidence            99999984   466 579999998752100   000 000 0000111234455554432 2223334689999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHH
Q 020527          228 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL  306 (325)
Q Consensus       228 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l  306 (325)
                      |||||+.+|++|||||||++||+.+++.+.++|+++++   +|.|||++|||++.+.. |||+++|++|+++..++..+.
T Consensus       420 lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~  496 (510)
T PRK09700        420 ISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD---DGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTNRDD  496 (510)
T ss_pred             HHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHH---CCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecCccc
Confidence            99999999999999999999999999999999999864   37899999999998865 999999999999988876443


Q ss_pred             h
Q 020527          307 L  307 (325)
Q Consensus       307 ~  307 (325)
                      +
T Consensus       497 ~  497 (510)
T PRK09700        497 M  497 (510)
T ss_pred             C
Confidence            3

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=5.9e-46  Score=329.12  Aligned_cols=197  Identities=23%  Similarity=0.338  Sum_probs=165.1

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .|+++|++++|+++   .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..  .. .++++
T Consensus         2 ~l~~~~l~~~~~~~---~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~-~~~~~   75 (207)
T PRK13539          2 MLEGEDLACVRGGR---VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--PD-VAEAC   75 (207)
T ss_pred             EEEEEeEEEEECCe---EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--hh-hHhhc
Confidence            48999999999743   59999999999999999999999999999999999999999999999988642  22 67789


Q ss_pred             EEEccCCcCc-cccHHHHHhcCCC-CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 020527          159 GFVGQEPQLL-QMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP  236 (325)
Q Consensus       159 ~~v~Q~~~l~-~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p  236 (325)
                      +|++|++.++ ..|++||+.+... .....+.+.++++..++.++.+..+         .+||||||||++||||++.+|
T Consensus        76 ~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~la~al~~~p  146 (207)
T PRK13539         76 HYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPF---------GYLSAGQKRRVALARLLVSNR  146 (207)
T ss_pred             EEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCCh---------hhcCHHHHHHHHHHHHHhcCC
Confidence            9999988776 6899999976321 1122334556666666655433222         579999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeC
Q 020527          237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD  294 (325)
Q Consensus       237 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~  294 (325)
                      +++||||||++||+.++..+.+.|+++.+   +|+|+|++||+++.+.. |+++.++.
T Consensus       147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~-~~~~~~~~  200 (207)
T PRK13539        147 PIWILDEPTAALDAAAVALFAELIRAHLA---QGGIVIAATHIPLGLPG-ARELDLGP  200 (207)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCchhhcc-CcEEeecC
Confidence            99999999999999999999999998864   37899999999999877 99988754

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=100.00  E-value=6.7e-46  Score=332.32  Aligned_cols=202  Identities=28%  Similarity=0.416  Sum_probs=158.3

Q ss_pred             EEEEEEEEECCCC---C-CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEEC--CE--eCCCCCH
Q 020527           80 VQFVNISFHYPSR---P-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID--GF--PLTDLDI  151 (325)
Q Consensus        80 i~~~~v~~~y~~~---~-~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~--g~--~i~~~~~  151 (325)
                      |+++|++++|+.+   . ...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++  |.  ++...+.
T Consensus         2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~   81 (224)
T TIGR02324         2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP   81 (224)
T ss_pred             EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence            7899999999631   0 1369999999999999999999999999999999999999999999998  43  5544443


Q ss_pred             HH---H-hcceEEEccCCcCc-cccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChH
Q 020527          152 RW---L-REKIGFVGQEPQLL-QMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGG  221 (325)
Q Consensus       152 ~~---~-r~~i~~v~Q~~~l~-~~tv~enl~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgG  221 (325)
                      ..   . +++++|+||++.++ ..|++||+.+... .....    +.+.++++..++.+..        ......+||||
T Consensus        82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------~~~~~~~LS~G  153 (224)
T TIGR02324        82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERL--------WHLPPATFSGG  153 (224)
T ss_pred             HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh--------hhCCcccCCHH
Confidence            32   2 45799999999887 5799999976321 11111    1222233333332211        11223679999


Q ss_pred             HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEE
Q 020527          222 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVI  292 (325)
Q Consensus       222 q~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l  292 (325)
                      ||||++|||||+.+|+++||||||++||+.+++.+.+.|+++++   +|+|+|++||+++.+. .||+++.+
T Consensus       154 ~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~g~tii~vsH~~~~~~~~~d~i~~~  222 (224)
T TIGR02324       154 EQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKA---RGAALIGIFHDEEVRELVADRVMDV  222 (224)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHhcceeEec
Confidence            99999999999999999999999999999999999999999864   3789999999999886 59999876

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=100.00  E-value=9.7e-46  Score=343.45  Aligned_cols=225  Identities=31%  Similarity=0.488  Sum_probs=191.1

Q ss_pred             cEEEEEEEEECCCCC--------CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCC
Q 020527           79 HVQFVNISFHYPSRP--------TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD  150 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~--------~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~  150 (325)
                      .++.++|.+.|+-+.        ...+++++||++++||.+||||+||||||||-++|.+|+++. |+|.|+|+++..++
T Consensus       276 ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~  354 (534)
T COG4172         276 LLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLS  354 (534)
T ss_pred             eEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccC
Confidence            589999999986432        246899999999999999999999999999999999999876 99999999998877


Q ss_pred             HHH---HhcceEEEccCCc--Cc-cccHHHHHhcCCCC---C----CCHHHHHHHHHHcCHHHH-HHhCCCCcccccCCC
Q 020527          151 IRW---LREKIGFVGQEPQ--LL-QMDIKSNIMYGCPK---D----VKNEDIEWAAKQAYVHEF-ILSLPCGYETLVDDD  216 (325)
Q Consensus       151 ~~~---~r~~i~~v~Q~~~--l~-~~tv~enl~~~~~~---~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  216 (325)
                      .++   +|+++..|||||+  |- .+||.+-|.-|..-   .    ..++++.++++.++++.. ..++|         +
T Consensus       355 ~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYP---------h  425 (534)
T COG4172         355 RKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYP---------H  425 (534)
T ss_pred             hhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCC---------c
Confidence            654   5789999999996  33 58999999876421   1    123445666777766542 44444         6


Q ss_pred             CCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCC
Q 020527          217 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG  295 (325)
Q Consensus       217 ~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G  295 (325)
                      ++|||||||++||||++.+|++++||||||+||..-+.++.++|+++.++  .|.+-++||||+..++. ||+|+||++|
T Consensus       426 EFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k--~~LsYLFISHDL~VvrAl~~~viVm~~G  503 (534)
T COG4172         426 EFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQK--HGLSYLFISHDLAVVRALCHRVIVMRDG  503 (534)
T ss_pred             ccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHH--hCCeEEEEeccHHHHHHhhceEEEEeCC
Confidence            79999999999999999999999999999999999999999999999874  68999999999999975 9999999999


Q ss_pred             EEEEEcChHHHhhc-CHHHHH
Q 020527          296 RIIEVGNHAELLHK-GRLYAK  315 (325)
Q Consensus       296 ~i~~~g~~~~l~~~-~~~~~~  315 (325)
                      +|+|.|+.++++++ ...|.+
T Consensus       504 kiVE~G~~~~if~~P~~~YT~  524 (534)
T COG4172         504 KIVEQGPTEAVFANPQHEYTR  524 (534)
T ss_pred             EEeeeCCHHHHhcCCCcHHHH
Confidence            99999999999986 345644

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=4e-46  Score=333.97  Aligned_cols=197  Identities=34%  Similarity=0.535  Sum_probs=170.8

Q ss_pred             cEEEEEEEEECCCCC------CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHH
Q 020527           79 HVQFVNISFHYPSRP------TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR  152 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~------~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~  152 (325)
                      .++++|+++.|+.+.      ...+++||||+|++||+++|||+||||||||-|+|+||++|++|+|+|+|+++..++  
T Consensus         4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~--   81 (268)
T COG4608           4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS--   81 (268)
T ss_pred             eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence            589999999996432      147999999999999999999999999999999999999999999999999976543  


Q ss_pred             HHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHH-HHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 020527          153 WLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQKQRIAIARA  231 (325)
Q Consensus       153 ~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra  231 (325)
                                                   .....+++.+.++.+++.+ ++.+.|         ++|||||+||++||||
T Consensus        82 -----------------------------~~~~~~~v~elL~~Vgl~~~~~~ryP---------helSGGQrQRi~IARA  123 (268)
T COG4608          82 -----------------------------KEERRERVLELLEKVGLPEEFLYRYP---------HELSGGQRQRIGIARA  123 (268)
T ss_pred             -----------------------------hhHHHHHHHHHHHHhCCCHHHhhcCC---------cccCchhhhhHHHHHH
Confidence                                         0112345667777777644 666666         6799999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhc-
Q 020527          232 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK-  309 (325)
Q Consensus       232 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~-  309 (325)
                      |+.+|+++++|||+|+||...+.+++++|.+++++  .|.|.++||||++.++. ||||.+|..|+|++.|+.++++.+ 
T Consensus       124 Lal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~--~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p  201 (268)
T COG4608         124 LALNPKLIVADEPVSALDVSVQAQILNLLKDLQEE--LGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNP  201 (268)
T ss_pred             HhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHH--hCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCC
Confidence            99999999999999999999999999999999875  58999999999999987 999999999999999999999875 


Q ss_pred             CHHHHHHH
Q 020527          310 GRLYAKLV  317 (325)
Q Consensus       310 ~~~~~~~~  317 (325)
                      .+-|.+.+
T Consensus       202 ~HpYTk~L  209 (268)
T COG4608         202 LHPYTKAL  209 (268)
T ss_pred             CCHHHHHH
Confidence            44565543

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=100.00  E-value=7.9e-46  Score=326.01  Aligned_cols=195  Identities=24%  Similarity=0.338  Sum_probs=161.1

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      |+++|++++|+++   .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..+++.++
T Consensus         1 l~~~~l~~~~~~~---~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~   76 (198)
T TIGR01189         1 LAARNLACSRGER---MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNIL   76 (198)
T ss_pred             CEEEEEEEEECCE---EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheE
Confidence            4789999999753   5999999999999999999999999999999999999999999999999886553 34567899


Q ss_pred             EEccCCcCcc-ccHHHHHhcCCCC-CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC
Q 020527          160 FVGQEPQLLQ-MDIKSNIMYGCPK-DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA  237 (325)
Q Consensus       160 ~v~Q~~~l~~-~tv~enl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~  237 (325)
                      |+||++.+++ .|+.||+.+.... ......+.++++..++.+..++.+         .+||||||||++||||++.+|+
T Consensus        77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~al~~~p~  147 (198)
T TIGR01189        77 YLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPA---------AQLSAGQQRRLALARLWLSRAP  147 (198)
T ss_pred             EeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCCh---------hhcCHHHHHHHHHHHHHhcCCC
Confidence            9999988874 8999999764211 111234556666667766554433         5799999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEE
Q 020527          238 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVV  291 (325)
Q Consensus       238 llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~  291 (325)
                      ++||||||++||+.++..+.+.|.++++   +|.|+|++||+...+ .|++++.
T Consensus       148 llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~sH~~~~~-~~~~~~~  197 (198)
T TIGR01189       148 LWILDEPTTALDKAGVALLAGLLRAHLA---RGGIVLLTTHQDLGL-VEARELR  197 (198)
T ss_pred             EEEEeCCCcCCCHHHHHHHHHHHHHHHh---CCCEEEEEEcccccc-cceEEee
Confidence            9999999999999999999999999864   378999999998432 3466553

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=100.00  E-value=5.6e-46  Score=353.62  Aligned_cols=217  Identities=27%  Similarity=0.444  Sum_probs=184.0

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCH-HHHhcc
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREK  157 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~-~~~r~~  157 (325)
                      .+++++++|.|++   ..++++|||+|++||+.||+|+||||||||+++|.|+|+|++|+|+++|+++.-.++ +..+..
T Consensus         4 ~l~~~~itK~f~~---~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G   80 (501)
T COG3845           4 ALEMRGITKRFPG---VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG   80 (501)
T ss_pred             eEEEeccEEEcCC---EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence            4899999999984   479999999999999999999999999999999999999999999999999875555 456788


Q ss_pred             eEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 020527          158 IGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP  236 (325)
Q Consensus       158 i~~v~Q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p  236 (325)
                      ||+|+|++.|+ ..||.|||.+|...... ..+........+.++.++++...+......+||-||||||.|-+||+++|
T Consensus        81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~-~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a  159 (501)
T COG3845          81 IGMVHQHFMLVPTLTVAENIILGLEPSKG-GLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGA  159 (501)
T ss_pred             CcEEeeccccccccchhhhhhhcCccccc-cccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCC
Confidence            99999999998 58999999998532110 01111122233456666666555555555789999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcC
Q 020527          237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN  302 (325)
Q Consensus       237 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~  302 (325)
                      ++||||||||-|-|...+++++.++.+++   .|+|||+|||.++++.. |||+-||++|+++...+
T Consensus       160 ~iLILDEPTaVLTP~E~~~lf~~l~~l~~---~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~  223 (501)
T COG3845         160 RLLILDEPTAVLTPQEADELFEILRRLAA---EGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD  223 (501)
T ss_pred             CEEEEcCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence            99999999999999999999999999986   49999999999999965 99999999999876655

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.3e-45  Score=367.21  Aligned_cols=224  Identities=22%  Similarity=0.379  Sum_probs=175.3

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-CCCeEEECCEeCCCCCH-HHHhc
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYIDGFPLTDLDI-RWLRE  156 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-~~G~I~i~g~~i~~~~~-~~~r~  156 (325)
                      .|+++|++++|++.....+|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++...+. ..+++
T Consensus       257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~  336 (500)
T TIGR02633       257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA  336 (500)
T ss_pred             eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence            49999999999421123599999999999999999999999999999999999985 89999999999864433 45577


Q ss_pred             ceEEEccCC---cCc-cccHHHHHhcCCCCCCCH-HHHHHHHHHcCHHHHHHhCCCCc-ccccCCCCCChHHHHHHHHHH
Q 020527          157 KIGFVGQEP---QLL-QMDIKSNIMYGCPKDVKN-EDIEWAAKQAYVHEFILSLPCGY-ETLVDDDLLSGGQKQRIAIAR  230 (325)
Q Consensus       157 ~i~~v~Q~~---~l~-~~tv~enl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~LSgGq~QRv~iAr  230 (325)
                      +++|+||++   .++ ..|+++|+.++....... ...........+.++++++.... ........|||||||||+|||
T Consensus       337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~  416 (500)
T TIGR02633       337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAK  416 (500)
T ss_pred             CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHH
Confidence            899999996   366 579999998752110000 00000111122344555554321 122334689999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHH
Q 020527          231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAE  305 (325)
Q Consensus       231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~  305 (325)
                      ||+.+|++|||||||++||+.++..+.++++++++   +|.|||++|||++++.. ||++++|++|+++..++.++
T Consensus       417 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~  489 (500)
T TIGR02633       417 MLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQ---EGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHA  489 (500)
T ss_pred             HHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHh---CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence            99999999999999999999999999999999975   37899999999999865 99999999999998876554

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=100.00  E-value=8.6e-46  Score=323.62  Aligned_cols=176  Identities=31%  Similarity=0.478  Sum_probs=145.0

Q ss_pred             CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCC--CCHHHHhcceEEEccCCc--Cccc
Q 020527           95 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD--LDIRWLREKIGFVGQEPQ--LLQM  170 (325)
Q Consensus        95 ~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~--~~~~~~r~~i~~v~Q~~~--l~~~  170 (325)
                      +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..  .....+++.++|+||++.  +|..
T Consensus         5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~   84 (190)
T TIGR01166         5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA   84 (190)
T ss_pred             cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence            369999999999999999999999999999999999999999999999998742  123355778999999983  5678


Q ss_pred             cHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCC
Q 020527          171 DIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEAT  245 (325)
Q Consensus       171 tv~enl~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPt  245 (325)
                      |++||+.++.. .....    +.+.++++..++.+..++.+         .+||||||||++|||||+.+|+++||||||
T Consensus        85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~laral~~~p~llllDEPt  155 (190)
T TIGR01166        85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPT---------HCLSGGEKKRVAIAGAVAMRPDVLLLDEPT  155 (190)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCCh---------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence            99999987421 11111    22344555555555444433         579999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchH
Q 020527          246 SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST  282 (325)
Q Consensus       246 s~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~  282 (325)
                      ++||+.+++.+.+.|+++++   +|+|||++|||+++
T Consensus       156 ~~LD~~~~~~~~~~l~~~~~---~~~tili~sH~~~~  189 (190)
T TIGR01166       156 AGLDPAGREQMLAILRRLRA---EGMTVVISTHDVDL  189 (190)
T ss_pred             ccCCHHHHHHHHHHHHHHHH---cCCEEEEEeecccc
Confidence            99999999999999999864   37899999999875

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=100.00  E-value=5.3e-45  Score=334.34  Aligned_cols=214  Identities=22%  Similarity=0.358  Sum_probs=169.7

Q ss_pred             cEEEEEEEEECCCC-----------------CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEE
Q 020527           79 HVQFVNISFHYPSR-----------------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI  141 (325)
Q Consensus        79 ~i~~~~v~~~y~~~-----------------~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i  141 (325)
                      +++++||++.|...                 ..+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~   83 (264)
T PRK13546          4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR   83 (264)
T ss_pred             eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence            47888888877431                 1245999999999999999999999999999999999999999999999


Q ss_pred             CCEeCCCCCHHHHhcceEEEccCCcCc-cccHHHHHhcCCC-CCCCHHHH----HHHHHHcCHHHHHHhCCCCcccccCC
Q 020527          142 DGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCP-KDVKNEDI----EWAAKQAYVHEFILSLPCGYETLVDD  215 (325)
Q Consensus       142 ~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~enl~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (325)
                      +|.             +++++|++.++ ..|+.+|+.++.. .....+..    ..+++..++.+.++.         ..
T Consensus        84 ~g~-------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~  141 (264)
T PRK13546         84 NGE-------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQ---------PV  141 (264)
T ss_pred             CCE-------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcC---------Cc
Confidence            984             35677777665 5799999975311 11112222    122333333333322         23


Q ss_pred             CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeC
Q 020527          216 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD  294 (325)
Q Consensus       216 ~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~  294 (325)
                      .+|||||+||++||||++.+|++|||||||++||+.++..+.+.+.++++   .|+|+|++||+++.+.. ||++++|++
T Consensus       142 ~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~---~g~tiIiisH~~~~i~~~~d~i~~l~~  218 (264)
T PRK13546        142 KKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKE---QNKTIFFVSHNLGQVRQFCTKIAWIEG  218 (264)
T ss_pred             ccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHH---CCCEEEEEcCCHHHHHHHcCEEEEEEC
Confidence            67999999999999999999999999999999999999999999999864   47899999999999865 999999999


Q ss_pred             CEEEEEcChHHHhhcCHHHHHHH
Q 020527          295 GRIIEVGNHAELLHKGRLYAKLV  317 (325)
Q Consensus       295 G~i~~~g~~~~l~~~~~~~~~~~  317 (325)
                      |++++.|+++++.+....|.+.+
T Consensus       219 G~i~~~g~~~~~~~~~~~~~~~~  241 (264)
T PRK13546        219 GKLKDYGELDDVLPKYEAFLNDF  241 (264)
T ss_pred             CEEEEeCCHHHHHHHhHHHHHHH
Confidence            99999999999887644444433

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=6.3e-46  Score=330.70  Aligned_cols=202  Identities=28%  Similarity=0.511  Sum_probs=179.9

Q ss_pred             ceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCC----HHHHhcceEEEccCCcCc-ccc
Q 020527           97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRWLREKIGFVGQEPQLL-QMD  171 (325)
Q Consensus        97 iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~----~~~~r~~i~~v~Q~~~l~-~~t  171 (325)
                      .-=+++|+.+.-.++||.|+||||||||+|+|+|+.+|++|+|.+||.-+.+..    ...-+++|||||||..|| .+|
T Consensus        13 ~~l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t   92 (352)
T COG4148          13 FALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT   92 (352)
T ss_pred             eEEEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence            345789999886799999999999999999999999999999999998775432    233467899999999999 589


Q ss_pred             HHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q 020527          172 IKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE  251 (325)
Q Consensus       172 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~  251 (325)
                      |+.|+.||.. ........+.....++..+++++|         ..|||||||||+|+|||+..|++||+|||.|+||..
T Consensus        93 VrgNL~YG~~-~~~~~~fd~iv~lLGI~hLL~R~P---------~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~  162 (352)
T COG4148          93 VRGNLRYGMW-KSMRAQFDQLVALLGIEHLLDRYP---------GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLP  162 (352)
T ss_pred             Eecchhhhhc-ccchHhHHHHHHHhCcHHHHhhCC---------CccCcchhhHHHHHHHHhcCCCeeeecCchhhcccc
Confidence            9999999964 344566778888899999999998         569999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhcC
Q 020527          252 SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG  310 (325)
Q Consensus       252 ~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~  310 (325)
                      .+++++-.+++++++  .+.-|++|||.++++.+ ||+|++|++|++.++|..++++...
T Consensus       163 RK~EilpylERL~~e--~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~  220 (352)
T COG4148         163 RKREILPYLERLRDE--INIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP  220 (352)
T ss_pred             hhhHHHHHHHHHHHh--cCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence            999999999999875  57899999999999865 9999999999999999999998643

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=100.00  E-value=3.6e-45  Score=327.76  Aligned_cols=196  Identities=26%  Similarity=0.448  Sum_probs=158.3

Q ss_pred             EEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcC---ccccHHHHHhcC
Q 020527          103 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQL---LQMDIKSNIMYG  179 (325)
Q Consensus       103 l~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l---~~~tv~enl~~~  179 (325)
                      |+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.     ..+++++|+||++.+   ++.|+.+|+.++
T Consensus         1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~   75 (223)
T TIGR03771         1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG   75 (223)
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence            578999999999999999999999999999999999999998753     245789999999876   347999999765


Q ss_pred             CCC------CC---CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCH
Q 020527          180 CPK------DV---KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS  250 (325)
Q Consensus       180 ~~~------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~  250 (325)
                      ...      ..   ..+.+.++++..++.+..+..         ..+||||||||++|||||+.+|+++|+||||++||+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~  146 (223)
T TIGR03771        76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELADRP---------VGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDM  146 (223)
T ss_pred             cccccccccCCcHHHHHHHHHHHHHhCCchhhcCC---------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence            210      00   112233344444444333222         257999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhcCHHHHHHH
Q 020527          251 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV  317 (325)
Q Consensus       251 ~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~  317 (325)
                      .+++.+.+.++++++   +|+|+|++|||++.+.. ||+++++ +|+++..|+++++.+++ .+.+.+
T Consensus       147 ~~~~~l~~~l~~~~~---~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~~-~~~~~~  209 (223)
T TIGR03771       147 PTQELLTELFIELAG---AGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDPA-PWMTTF  209 (223)
T ss_pred             HHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcChH-HHHHHh
Confidence            999999999999864   37899999999998865 9999999 89999999999986643 344443

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=6.5e-45  Score=399.00  Aligned_cols=216  Identities=18%  Similarity=0.375  Sum_probs=183.2

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .|+++|++|+|+++ .+.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.. .....+++|
T Consensus      1937 ~L~v~nLsK~Y~~~-~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~I 2014 (2272)
T TIGR01257      1937 ILRLNELTKVYSGT-SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNM 2014 (2272)
T ss_pred             eEEEEEEEEEECCC-CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhE
Confidence            59999999999752 2469999999999999999999999999999999999999999999999999864 344567889


Q ss_pred             EEEccCCcCc-cccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 020527          159 GFVGQEPQLL-QMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI  232 (325)
Q Consensus       159 ~~v~Q~~~l~-~~tv~enl~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral  232 (325)
                      ||+||++.++ .+|++||+.+... .....    +.+.+.++..++.+..++.+         .+||||||||++|||||
T Consensus      2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~---------~~LSGGqKqRLslA~AL 2085 (2272)
T TIGR01257      2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLA---------GTYSGGNKRKLSTAIAL 2085 (2272)
T ss_pred             EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCCh---------hhCCHHHHHHHHHHHHH
Confidence            9999999888 5899999975311 11111    22334455566655544433         57999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527          233 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH  308 (325)
Q Consensus       233 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~  308 (325)
                      +.+|+|+||||||+|||+.+++.+.+.|+++++   +|+|||++||++++++. |||+++|++|++++.|+++++.+
T Consensus      2086 i~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~---~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~ 2159 (2272)
T TIGR01257      2086 IGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIR---EGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKS 2159 (2272)
T ss_pred             hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence            999999999999999999999999999999864   37899999999999975 99999999999999999998854

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=100.00  E-value=2e-44  Score=352.25  Aligned_cols=212  Identities=25%  Similarity=0.360  Sum_probs=170.5

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      +++++|+++.|++...+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+.            
T Consensus        21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------   88 (549)
T PRK13545         21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------   88 (549)
T ss_pred             eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence            58999999999764334699999999999999999999999999999999999999999999999751            


Q ss_pred             EEEccCCcCc-cccHHHHHhcCCC-CCCCHHH----HHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 020527          159 GFVGQEPQLL-QMDIKSNIMYGCP-KDVKNED----IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI  232 (325)
Q Consensus       159 ~~v~Q~~~l~-~~tv~enl~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral  232 (325)
                       ++++.+.++ ..|++||+.+... .......    +..+++.+++.+++++.+         ..||||||||++|||||
T Consensus        89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~---------~~LSGGQrQRVaLArAL  158 (549)
T PRK13545         89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPV---------KTYSSGMKSRLGFAISV  158 (549)
T ss_pred             -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCc---------ccCCHHHHHHHHHHHHH
Confidence             122233344 4799999976321 1111221    233445555554444433         57999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhcCH
Q 020527          233 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKGR  311 (325)
Q Consensus       233 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~~  311 (325)
                      +.+|++|||||||++||+.++..+.+.|.++++   .|+|||++|||++.+.. ||++++|++|++++.|+++++.....
T Consensus       159 ~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~---~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~~  235 (549)
T PRK13545        159 HINPDILVIDEALSVGDQTFTKKCLDKMNEFKE---QGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYD  235 (549)
T ss_pred             HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhHH
Confidence            999999999999999999999999999999864   47899999999999865 99999999999999999999876544


Q ss_pred             HHHH
Q 020527          312 LYAK  315 (325)
Q Consensus       312 ~~~~  315 (325)
                      .|.+
T Consensus       236 ~~~~  239 (549)
T PRK13545        236 EFLK  239 (549)
T ss_pred             HHHH
Confidence            4443

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=100.00  E-value=2.3e-45  Score=329.17  Aligned_cols=198  Identities=25%  Similarity=0.342  Sum_probs=157.0

Q ss_pred             cccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhc
Q 020527           77 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE  156 (325)
Q Consensus        77 ~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~  156 (325)
                      |..+.++|++++|+++   ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...     . 
T Consensus        20 ~~~l~~~~~~~~~~~~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~-   90 (224)
T cd03220          20 LKKLGILGRKGEVGEF---WALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----G-   90 (224)
T ss_pred             hhhhhhhhhhhhcCCe---EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----c-
Confidence            3347899999999753   699999999999999999999999999999999999999999999999875311     1 


Q ss_pred             ceEEEccCCcC-ccccHHHHHhcCCC-CCCCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527          157 KIGFVGQEPQL-LQMDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR  230 (325)
Q Consensus       157 ~i~~v~Q~~~l-~~~tv~enl~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr  230 (325)
                            +...+ ...||+||+.++.. ......    ...++++..++.+.+++.         ..+||||||||++|||
T Consensus        91 ------~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LSgG~~qrv~lar  155 (224)
T cd03220          91 ------LGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLP---------VKTYSSGMKARLAFAI  155 (224)
T ss_pred             ------ccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCC---------hhhCCHHHHHHHHHHH
Confidence                  11122 25799999976421 111111    122333333433333222         2579999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEc
Q 020527          231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG  301 (325)
Q Consensus       231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g  301 (325)
                      ||+.+|+++||||||++||+.++..+.+.|.++++   +|+|||++||+++.+.. ||++++|++|++++.|
T Consensus       156 al~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~---~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g  224 (224)
T cd03220         156 ATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLK---QGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG  224 (224)
T ss_pred             HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence            99999999999999999999999999999999864   37899999999999864 9999999999998754

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=7.5e-45  Score=319.10  Aligned_cols=190  Identities=22%  Similarity=0.372  Sum_probs=156.5

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      |+++|++++|+++   .++ ++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....    ++.++
T Consensus         2 l~~~~l~~~~~~~---~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~   73 (195)
T PRK13541          2 LSLHQLQFNIEQK---NLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCT   73 (195)
T ss_pred             eEEEEeeEEECCc---EEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEE
Confidence            7899999999642   345 599999999999999999999999999999999999999999999875432    34699


Q ss_pred             EEccCCcC-ccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCE
Q 020527          160 FVGQEPQL-LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI  238 (325)
Q Consensus       160 ~v~Q~~~l-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~l  238 (325)
                      |++|++.+ +..|++||+.+........+.+..+++..++.+..++.+         .+||||||||++||||++.+|++
T Consensus        74 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~~rl~la~al~~~p~~  144 (195)
T PRK13541         74 YIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKC---------YSLSSGMQKIVAIARLIACQSDL  144 (195)
T ss_pred             eccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccCh---------hhCCHHHHHHHHHHHHHhcCCCE
Confidence            99998765 478999999874221112334455556666655444332         57999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEE
Q 020527          239 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI  289 (325)
Q Consensus       239 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v  289 (325)
                      +||||||++||+.++..+.+.+++..+   .+.|+|++||+++.+..+|-+
T Consensus       145 lllDEP~~~LD~~~~~~l~~~l~~~~~---~~~tiii~sh~~~~i~~~~~~  192 (195)
T PRK13541        145 WLLDEVETNLSKENRDLLNNLIVMKAN---SGGIVLLSSHLESSIKSAQIL  192 (195)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCccccchhhee
Confidence            999999999999999999999986543   478999999999998888865

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=5.8e-45  Score=362.55  Aligned_cols=218  Identities=23%  Similarity=0.415  Sum_probs=172.8

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCH-HHHhcc
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREK  157 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~-~~~r~~  157 (325)
                      .++++|+++        .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. ..++++
T Consensus       257 ~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~  328 (501)
T PRK10762        257 RLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG  328 (501)
T ss_pred             EEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence            488888873        27999999999999999999999999999999999999999999999999876554 345678


Q ss_pred             eEEEccCC---cCc-cccHHHHHhcCCCCCCCH--HHHHHHHHHcCHHHHHHhCCCC-cccccCCCCCChHHHHHHHHHH
Q 020527          158 IGFVGQEP---QLL-QMDIKSNIMYGCPKDVKN--EDIEWAAKQAYVHEFILSLPCG-YETLVDDDLLSGGQKQRIAIAR  230 (325)
Q Consensus       158 i~~v~Q~~---~l~-~~tv~enl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~LSgGq~QRv~iAr  230 (325)
                      +||+||++   .++ ..|++||+.++.......  ...........+.++++.+... ........+|||||||||+|||
T Consensus       329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~  408 (501)
T PRK10762        329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIAR  408 (501)
T ss_pred             CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHH
Confidence            99999997   355 589999998742100000  0000000111234455554431 1223334689999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHh
Q 020527          231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL  307 (325)
Q Consensus       231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~  307 (325)
                      ||+.+|++|||||||++||+.+++.+.++|+++.+   +|.|||++|||++.+.. ||++++|++|+++..++++++.
T Consensus       409 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  483 (501)
T PRK10762        409 GLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKA---EGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQAT  483 (501)
T ss_pred             HHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHH---CCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccCC
Confidence            99999999999999999999999999999999964   37899999999999865 9999999999999999888764

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=1.9e-44  Score=395.36  Aligned_cols=215  Identities=24%  Similarity=0.407  Sum_probs=180.7

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .|+++||+|.|+++ ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .....|+.+
T Consensus       928 ~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~I 1005 (2272)
T TIGR01257       928 GVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSL 1005 (2272)
T ss_pred             eEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcE
Confidence            59999999999632 2469999999999999999999999999999999999999999999999999864 345667889


Q ss_pred             EEEccCCcCc-cccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 020527          159 GFVGQEPQLL-QMDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI  232 (325)
Q Consensus       159 ~~v~Q~~~l~-~~tv~enl~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral  232 (325)
                      ||+||++.++ ..||+||+.+... ....    ++++.+.++..++.+..++.         ..+||||||||++|||||
T Consensus      1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~---------~~~LSGGqKQRLsLArAL 1076 (2272)
T TIGR01257      1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEE---------AQDLSGGMQRKLSVAIAF 1076 (2272)
T ss_pred             EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCC---------hhhCCHHHHHHHHHHHHH
Confidence            9999999888 5899999987421 1111    12233344444444333322         367999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527          233 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH  308 (325)
Q Consensus       233 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~  308 (325)
                      +.+|+++||||||+|||+.+++.+.++|++++    +|+|||++||+++++.. ||||++|++|++++.|+++.+.+
T Consensus      1077 i~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~----~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~ 1149 (2272)
T TIGR01257      1077 VGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR----SGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKN 1149 (2272)
T ss_pred             HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh----CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence            99999999999999999999999999999984    37899999999999975 99999999999999999998854

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.1e-45  Score=362.41  Aligned_cols=219  Identities=23%  Similarity=0.340  Sum_probs=172.9

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCH-HHHhcc
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREK  157 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~-~~~r~~  157 (325)
                      .++++|+++.       .+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+. ...++.
T Consensus       257 ~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~  329 (501)
T PRK11288        257 RLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG  329 (501)
T ss_pred             EEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence            4888888731       38999999999999999999999999999999999999999999999998864433 345678


Q ss_pred             eEEEccCCc---Cc-cccHHHHHhcCCCCCCCH-H-HHHHHHHHcCHHHHHHhCCCC-cccccCCCCCChHHHHHHHHHH
Q 020527          158 IGFVGQEPQ---LL-QMDIKSNIMYGCPKDVKN-E-DIEWAAKQAYVHEFILSLPCG-YETLVDDDLLSGGQKQRIAIAR  230 (325)
Q Consensus       158 i~~v~Q~~~---l~-~~tv~enl~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~LSgGq~QRv~iAr  230 (325)
                      ++|+||++.   +| ..|++||+.++....... . ..........+.++++.+... ........+|||||||||+|||
T Consensus       330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~  409 (501)
T PRK11288        330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGR  409 (501)
T ss_pred             CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHH
Confidence            999999973   55 589999998753111000 0 000000111233455554431 1223334689999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHh
Q 020527          231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL  307 (325)
Q Consensus       231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~  307 (325)
                      ||+.+|++|||||||+|||+.++..+.++|.++++   .|.|||++|||++.+.. ||++++|++|++++.|++++..
T Consensus       410 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~~  484 (501)
T PRK11288        410 WLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAA---QGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQAT  484 (501)
T ss_pred             HHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHh---CCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccCC
Confidence            99999999999999999999999999999999975   47899999999999865 9999999999999999887654

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.8e-44  Score=358.24  Aligned_cols=209  Identities=24%  Similarity=0.435  Sum_probs=165.6

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      |+++|++++|+++   ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.           ..|+
T Consensus         2 l~i~~ls~~~~~~---~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~   67 (530)
T PRK15064          2 LSTANITMQFGAK---PLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLG   67 (530)
T ss_pred             EEEEEEEEEeCCc---EeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence            7899999999753   6999999999999999999999999999999999999999999999872           3599


Q ss_pred             EEccCCcCc-cccHHHHHhcCCCCC------------CC----HH--HHHHH----------HHHcCHHHHHHhCCCCcc
Q 020527          160 FVGQEPQLL-QMDIKSNIMYGCPKD------------VK----NE--DIEWA----------AKQAYVHEFILSLPCGYE  210 (325)
Q Consensus       160 ~v~Q~~~l~-~~tv~enl~~~~~~~------------~~----~~--~~~~~----------~~~~~~~~~~~~~~~~~~  210 (325)
                      |+||++.++ ..|++||+.++....            ..    ..  ...+.          .....+.++++.+.....
T Consensus        68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~  147 (530)
T PRK15064         68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEE  147 (530)
T ss_pred             EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChh
Confidence            999999877 579999998642100            00    00  00000          001123345555443211


Q ss_pred             c-ccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCE
Q 020527          211 T-LVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDR  288 (325)
Q Consensus       211 ~-~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~  288 (325)
                      . .....+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|.+      .|.|||+||||++.+.. ||+
T Consensus       148 ~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~------~~~tiiivsHd~~~~~~~~d~  221 (530)
T PRK15064        148 QHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE------RNSTMIIISHDRHFLNSVCTH  221 (530)
T ss_pred             HhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh------CCCeEEEEeCCHHHHHhhcce
Confidence            1 122367999999999999999999999999999999999999999998863      26799999999999865 999


Q ss_pred             EEEEeCCEE-EEEcChHHHhh
Q 020527          289 IVVIDDGRI-IEVGNHAELLH  308 (325)
Q Consensus       289 v~~l~~G~i-~~~g~~~~l~~  308 (325)
                      |++|++|++ ++.|+++++++
T Consensus       222 i~~l~~g~i~~~~g~~~~~~~  242 (530)
T PRK15064        222 MADLDYGELRVYPGNYDEYMT  242 (530)
T ss_pred             EEEEeCCEEEEecCCHHHHHH
Confidence            999999999 47899887764

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=100.00  E-value=6.4e-44  Score=364.38  Aligned_cols=217  Identities=35%  Similarity=0.491  Sum_probs=181.3

Q ss_pred             cEEEEEEEEECCCC-CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHH---
Q 020527           79 HVQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL---  154 (325)
Q Consensus        79 ~i~~~~v~~~y~~~-~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~---  154 (325)
                      .|+++|++++|++. ..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.+++   
T Consensus         4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~   83 (648)
T PRK10535          4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL   83 (648)
T ss_pred             EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence            48999999999632 12369999999999999999999999999999999999999999999999999987765443   


Q ss_pred             -hcceEEEccCCcCcc-ccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 020527          155 -REKIGFVGQEPQLLQ-MDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA  227 (325)
Q Consensus       155 -r~~i~~v~Q~~~l~~-~tv~enl~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~  227 (325)
                       ++.++|+||++.+|+ .|+.||+.++... ...    .++..+.++..++.+.++..+         .+|||||+||++
T Consensus        84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~---------~~LS~Gq~qrv~  154 (648)
T PRK10535         84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQP---------SQLSGGQQQRVS  154 (648)
T ss_pred             HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCc---------ccCCHHHHHHHH
Confidence             568999999999884 7999999763210 111    112333444444444433333         579999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHh
Q 020527          228 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL  307 (325)
Q Consensus       228 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~  307 (325)
                      |||||+.+|+++||||||++||+.+++.+.++++++++   +|+|+|++||+++.+..|||+++|++|++++.|++++..
T Consensus       155 LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~---~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  231 (648)
T PRK10535        155 IARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRD---RGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV  231 (648)
T ss_pred             HHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence            99999999999999999999999999999999999864   378999999999988779999999999999999988775

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.2e-44  Score=357.42  Aligned_cols=202  Identities=22%  Similarity=0.377  Sum_probs=168.1

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .|+++|++++|+++   .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.           +++
T Consensus       319 ~l~~~~l~~~~~~~---~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i  384 (530)
T PRK15064        319 ALEVENLTKGFDNG---PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANI  384 (530)
T ss_pred             eEEEEeeEEeeCCc---eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEE
Confidence            59999999999753   5999999999999999999999999999999999999999999999872           469


Q ss_pred             EEEccCCc--Cc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCH-HHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 020527          159 GFVGQEPQ--LL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYV-HEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR  234 (325)
Q Consensus       159 ~~v~Q~~~--l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~  234 (325)
                      ||+||++.  ++ ..|+++|+.+........+.+...++..++ .+..++.         ..+||||||||++|||||+.
T Consensus       385 ~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~~LSgGq~qrv~la~al~~  455 (530)
T PRK15064        385 GYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKS---------VKVLSGGEKGRMLFGKLMMQ  455 (530)
T ss_pred             EEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCc---------ccccCHHHHHHHHHHHHHhc
Confidence            99999974  44 479999986421111223344555555555 2333332         26799999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEE-EEcChHHHhhc
Q 020527          235 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII-EVGNHAELLHK  309 (325)
Q Consensus       235 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~-~~g~~~~l~~~  309 (325)
                      +|++|||||||++||+.++..+.+.|+++      +.|||+||||++.+.. ||++++|++|+++ ..|+++++++.
T Consensus       456 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~------~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~  526 (530)
T PRK15064        456 KPNVLVMDEPTNHMDMESIESLNMALEKY------EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS  526 (530)
T ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence            99999999999999999999999999876      2399999999999865 9999999999998 77888887654

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=100.00  E-value=2.7e-44  Score=358.34  Aligned_cols=215  Identities=19%  Similarity=0.337  Sum_probs=172.7

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHH-Hhcc
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK  157 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~-~r~~  157 (325)
                      .|+++|+++        .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+... .+++
T Consensus       268 ~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~  339 (510)
T PRK15439        268 VLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG  339 (510)
T ss_pred             eEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence            489999983        1699999999999999999999999999999999999999999999999987655443 4568


Q ss_pred             eEEEccCC---cCc-cccHHHHHhcCCC---C-CCCHHHHHHHHHHcCHHHHHHhCCCC-cccccCCCCCChHHHHHHHH
Q 020527          158 IGFVGQEP---QLL-QMDIKSNIMYGCP---K-DVKNEDIEWAAKQAYVHEFILSLPCG-YETLVDDDLLSGGQKQRIAI  228 (325)
Q Consensus       158 i~~v~Q~~---~l~-~~tv~enl~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~LSgGq~QRv~i  228 (325)
                      |+|+||++   .+| ..|+.+|+.....   . ......     ....+.++++.+... .........|||||||||+|
T Consensus       340 i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~l  414 (510)
T PRK15439        340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPAR-----ENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLI  414 (510)
T ss_pred             cEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHH-----HHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHH
Confidence            99999985   366 4799999853210   0 001110     111234455554432 12222346899999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHh
Q 020527          229 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL  307 (325)
Q Consensus       229 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~  307 (325)
                      ||||+.+|++|||||||++||+.+++.+.+.|+++++   +|.|||++|||++++.. |||+++|++|+++..|+++++.
T Consensus       415 a~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~---~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~  491 (510)
T PRK15439        415 AKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAA---QNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAIN  491 (510)
T ss_pred             HHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHh---CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCC
Confidence            9999999999999999999999999999999999975   37899999999999865 9999999999999999988775


Q ss_pred             hc
Q 020527          308 HK  309 (325)
Q Consensus       308 ~~  309 (325)
                      .+
T Consensus       492 ~~  493 (510)
T PRK15439        492 VD  493 (510)
T ss_pred             HH
Confidence            43

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=9.7e-44  Score=357.71  Aligned_cols=210  Identities=27%  Similarity=0.423  Sum_probs=166.6

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      +|+++||+++|++.  +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++           ..+|
T Consensus         6 ~l~i~~l~~~y~~~--~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i   72 (556)
T PRK11819          6 IYTMNRVSKVVPPK--KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKV   72 (556)
T ss_pred             EEEEeeEEEEeCCC--CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence            59999999999721  3699999999999999999999999999999999999999999999974           1469


Q ss_pred             EEEccCCcCc-cccHHHHHhcCCCC---------------CCCHH----------HHHHHHH-------HcCHHHHHHhC
Q 020527          159 GFVGQEPQLL-QMDIKSNIMYGCPK---------------DVKNE----------DIEWAAK-------QAYVHEFILSL  205 (325)
Q Consensus       159 ~~v~Q~~~l~-~~tv~enl~~~~~~---------------~~~~~----------~~~~~~~-------~~~~~~~~~~~  205 (325)
                      ||+||++.++ ..|+.||+.++...               .....          .+.+..+       ...+.++++.+
T Consensus        73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  152 (556)
T PRK11819         73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL  152 (556)
T ss_pred             EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence            9999999887 47999999875210               00000          0000010       11233445554


Q ss_pred             CCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh
Q 020527          206 PCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA  285 (325)
Q Consensus       206 ~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~  285 (325)
                      .... ......+|||||||||+|||||+.+|++|||||||++||+.+...+.+.|+++      +.|||+||||++.+..
T Consensus       153 gl~~-~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~------~~tviiisHd~~~~~~  225 (556)
T PRK11819        153 RCPP-WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY------PGTVVAVTHDRYFLDN  225 (556)
T ss_pred             CCCc-ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC------CCeEEEEeCCHHHHHh
Confidence            4321 22234689999999999999999999999999999999999999999999876      2399999999999875


Q ss_pred             -cCEEEEEeCCEEE-EEcChHHHhh
Q 020527          286 -VDRIVVIDDGRII-EVGNHAELLH  308 (325)
Q Consensus       286 -~d~v~~l~~G~i~-~~g~~~~l~~  308 (325)
                       ||+|++|++|+++ ..|+++++..
T Consensus       226 ~~d~i~~l~~g~i~~~~g~~~~~~~  250 (556)
T PRK11819        226 VAGWILELDRGRGIPWEGNYSSWLE  250 (556)
T ss_pred             hcCeEEEEeCCEEEEecCCHHHHHH
Confidence             9999999999986 6788877644

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=100.00  E-value=5.9e-44  Score=336.73  Aligned_cols=184  Identities=32%  Similarity=0.500  Sum_probs=153.4

Q ss_pred             EEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCcc-ccHHHHHhcCCCC-CCCH----
Q 020527          113 IVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPK-DVKN----  186 (325)
Q Consensus       113 iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~tv~enl~~~~~~-~~~~----  186 (325)
                      |+||||||||||+++|+|+++|++|+|.++|+++...+.  .+++++|+||++.+|+ .||+||+.++... ....    
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~   78 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK   78 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence            689999999999999999999999999999999876543  3578999999999884 7999999876321 1111    


Q ss_pred             HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcc
Q 020527          187 EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND  266 (325)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~  266 (325)
                      +++.++++..++.++.++.+         .+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++.++
T Consensus        79 ~~~~~~l~~~~l~~~~~~~~---------~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~  149 (325)
T TIGR01187        79 PRVLEALRLVQLEEFADRKP---------HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQ  149 (325)
T ss_pred             HHHHHHHHHcCCcchhcCCh---------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence            22333444444444333333         679999999999999999999999999999999999999999999998753


Q ss_pred             CCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhc
Q 020527          267 CKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK  309 (325)
Q Consensus       267 ~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~  309 (325)
                        .|+|+|+||||++++.. |||+++|++|++++.|+++++++.
T Consensus       150 --~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~  191 (325)
T TIGR01187       150 --LGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE  191 (325)
T ss_pred             --cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence              47899999999998865 999999999999999999999765

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=100.00  E-value=2.9e-43  Score=319.72  Aligned_cols=196  Identities=25%  Similarity=0.373  Sum_probs=155.6

Q ss_pred             EECCCCCCCCceeeeeEEee-----CCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 020527           87 FHYPSRPTVPILNHVCLTIE-----ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV  161 (325)
Q Consensus        87 ~~y~~~~~~~iL~~isl~i~-----~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v  161 (325)
                      |+|++.  .+.+++++|+++     +||+++|+||||||||||+++|+|+++|++|+|.++|.            .|+|+
T Consensus         1 ~~y~~~--~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~   66 (246)
T cd03237           1 YTYPTM--KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYK   66 (246)
T ss_pred             CCCccc--ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEe
Confidence            356542  347788888876     79999999999999999999999999999999999884            59999


Q ss_pred             ccCCcC-ccccHHHHHhcCCCCC-CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEE
Q 020527          162 GQEPQL-LQMDIKSNIMYGCPKD-VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL  239 (325)
Q Consensus       162 ~Q~~~l-~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ll  239 (325)
                      ||++.. +..||+||+.+..... .......++++..++.+.+++.+         .+||||||||++|||||+.+|+++
T Consensus        67 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~---------~~LSgGe~qrv~iaraL~~~p~ll  137 (246)
T cd03237          67 PQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREV---------PELSGGELQRVAIAACLSKDADIY  137 (246)
T ss_pred             cccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHHHhhCCh---------hhCCHHHHHHHHHHHHHhcCCCEE
Confidence            999875 4789999997532111 11122344555555555444333         579999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEE--EEcChHHHh
Q 020527          240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII--EVGNHAELL  307 (325)
Q Consensus       240 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~--~~g~~~~l~  307 (325)
                      ||||||++||+.++..+.+.|+++.++  .++|||+||||++.+.. ||++++|+++..+  ..++|+++.
T Consensus       138 llDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~  206 (246)
T cd03237         138 LLDEPSAYLDVEQRLMASKVIRRFAEN--NEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR  206 (246)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence            999999999999999999999998653  47899999999999875 9999999765433  445666654

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=100.00  E-value=9.3e-44  Score=353.05  Aligned_cols=209  Identities=22%  Similarity=0.317  Sum_probs=164.0

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-CCCeEEECCEeCCC-CCHHHHhc
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYIDGFPLTD-LDIRWLRE  156 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-~~G~I~i~g~~i~~-~~~~~~r~  156 (325)
                      .|+++|++++|+++   .+|+|+||+|++||+++|+||||||||||+|+|+|+.+| ++|+|+++|+++.. ......++
T Consensus       260 ~l~~~~l~~~~~~~---~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~  336 (490)
T PRK10938        260 RIVLNNGVVSYNDR---PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKK  336 (490)
T ss_pred             eEEEeceEEEECCe---eEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHh
Confidence            59999999999753   599999999999999999999999999999999999876 69999999987632 22234567


Q ss_pred             ceEEEccCCcCc-c--ccHHHHHhcCCCC------CCCH---HHHHHHHHHcCHHH-HHHhCCCCcccccCCCCCChHHH
Q 020527          157 KIGFVGQEPQLL-Q--MDIKSNIMYGCPK------DVKN---EDIEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQK  223 (325)
Q Consensus       157 ~i~~v~Q~~~l~-~--~tv~enl~~~~~~------~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~LSgGq~  223 (325)
                      +|+|+||++.++ .  .++.+++.++...      ....   +.+.+.++..++.+ ..         .....+||||||
T Consensus       337 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---------~~~~~~LSgGq~  407 (490)
T PRK10938        337 HIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTA---------DAPFHSLSWGQQ  407 (490)
T ss_pred             hceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhc---------cCchhhCCHHHH
Confidence            899999998654 2  4677776543110      0111   12223333333322 22         222367999999


Q ss_pred             HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-h-cCEEEEEeCCEEEEEc
Q 020527          224 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-A-VDRIVVIDDGRIIEVG  301 (325)
Q Consensus       224 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~-~d~v~~l~~G~i~~~g  301 (325)
                      |||+|||||+.+|++|||||||++||+.+++.+.+.|++++++  .+.|||++|||++.+. . ||++++|++|++++.-
T Consensus       408 qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~--~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~  485 (490)
T PRK10938        408 RLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISE--GETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV  485 (490)
T ss_pred             HHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhc--CCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence            9999999999999999999999999999999999999999753  2357999999999985 3 8999999999998754

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=100.00  E-value=8.3e-43  Score=350.78  Aligned_cols=210  Identities=27%  Similarity=0.415  Sum_probs=166.6

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      +++++||+++|++.  +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++           +..|
T Consensus         4 ~i~~~nls~~~~~~--~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i   70 (552)
T TIGR03719         4 IYTMNRVSKVVPPK--KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKV   70 (552)
T ss_pred             EEEEeeEEEecCCC--CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence            48999999999722  3699999999999999999999999999999999999999999999875           2469


Q ss_pred             EEEccCCcCc-cccHHHHHhcCCCC----------------CCCH---------HHHHHHHHHcC-------HHHHHHhC
Q 020527          159 GFVGQEPQLL-QMDIKSNIMYGCPK----------------DVKN---------EDIEWAAKQAY-------VHEFILSL  205 (325)
Q Consensus       159 ~~v~Q~~~l~-~~tv~enl~~~~~~----------------~~~~---------~~~~~~~~~~~-------~~~~~~~~  205 (325)
                      ||+||++.++ ..||+||+.++...                ....         .++.+.++..+       +.++++.+
T Consensus        71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  150 (552)
T TIGR03719        71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL  150 (552)
T ss_pred             EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence            9999999887 57999999875210                0000         01112222222       22344444


Q ss_pred             CCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh
Q 020527          206 PCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA  285 (325)
Q Consensus       206 ~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~  285 (325)
                      .... ......+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++      +.|||+||||++.+..
T Consensus       151 ~l~~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~------~~tvIiisHd~~~~~~  223 (552)
T TIGR03719       151 RCPP-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY------PGTVVAVTHDRYFLDN  223 (552)
T ss_pred             CCCc-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC------CCeEEEEeCCHHHHHh
Confidence            3321 12234679999999999999999999999999999999999999999998876      2499999999999875


Q ss_pred             -cCEEEEEeCCEEE-EEcChHHHhh
Q 020527          286 -VDRIVVIDDGRII-EVGNHAELLH  308 (325)
Q Consensus       286 -~d~v~~l~~G~i~-~~g~~~~l~~  308 (325)
                       ||++++|++|+++ ..|+++++..
T Consensus       224 ~~d~v~~l~~g~i~~~~g~~~~~~~  248 (552)
T TIGR03719       224 VAGWILELDRGRGIPWEGNYSSWLE  248 (552)
T ss_pred             hcCeEEEEECCEEEEecCCHHHHHH
Confidence             9999999999976 6788887654

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PLN03211 ABC transporter G-25; Provisional

Probab=100.00  E-value=1.5e-43  Score=360.96  Aligned_cols=201  Identities=27%  Similarity=0.441  Sum_probs=162.5

Q ss_pred             CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCC--CCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-ccc
Q 020527           95 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS--DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMD  171 (325)
Q Consensus        95 ~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~--~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~t  171 (325)
                      +.+|+|+|+++++||++||+||||||||||+++|+|+.+|+  +|+|.+||+++..    ..++++|||+|++.++ ..|
T Consensus        81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~----~~~~~i~yv~Q~~~l~~~lT  156 (659)
T PLN03211         81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK----QILKRTGFVTQDDILYPHLT  156 (659)
T ss_pred             CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch----hhccceEEECcccccCCcCC
Confidence            46999999999999999999999999999999999999885  8999999998742    3456799999999988 579


Q ss_pred             HHHHHhcCCC----CCCCHHHHHHHHHHcCHHHHHHhCCCCc--ccccC---CCCCChHHHHHHHHHHHHcCCCCEEEEe
Q 020527          172 IKSNIMYGCP----KDVKNEDIEWAAKQAYVHEFILSLPCGY--ETLVD---DDLLSGGQKQRIAIARAILRDPAILLLD  242 (325)
Q Consensus       172 v~enl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~LSgGq~QRv~iAral~~~p~llllD  242 (325)
                      |+||+.+...    .....++..     ..++++++.+....  ++.++   ...||||||||++|||||+.+|+||+||
T Consensus       157 V~E~l~~~a~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLD  231 (659)
T PLN03211        157 VRETLVFCSLLRLPKSLTKQEKI-----LVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD  231 (659)
T ss_pred             HHHHHHHHHHhCCCCCCCHHHHH-----HHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEe
Confidence            9999987421    111221111     11223333332211  22222   2579999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchH-H-HhcCEEEEEeCCEEEEEcChHHHh
Q 020527          243 EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST-I-KAVDRIVVIDDGRIIEVGNHAELL  307 (325)
Q Consensus       243 EPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~-~-~~~d~v~~l~~G~i~~~g~~~~l~  307 (325)
                      |||+|||+.++..+.+.|+++++   +|+|||++||+++. + +.||++++|++|++++.|+++++.
T Consensus       232 EPtsgLD~~~~~~l~~~L~~l~~---~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~  295 (659)
T PLN03211        232 EPTSGLDATAAYRLVLTLGSLAQ---KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAM  295 (659)
T ss_pred             CCCCCcCHHHHHHHHHHHHHHHh---CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHH
Confidence            99999999999999999999975   48899999999984 5 559999999999999999998875

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-43  Score=352.40  Aligned_cols=215  Identities=22%  Similarity=0.389  Sum_probs=169.3

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHH-HHhcc
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR-WLREK  157 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~-~~r~~  157 (325)
                      .|+++|++++|  +   .+|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++...+.. .+++.
T Consensus       250 ~i~~~~l~~~~--~---~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~  324 (491)
T PRK10982        250 ILEVRNLTSLR--Q---PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHG  324 (491)
T ss_pred             EEEEeCccccc--C---cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCC
Confidence            59999999874  2   499999999999999999999999999999999999999999999999998765543 34677


Q ss_pred             eEEEccCCc---Cc-cccHHHHHhcC-----CCC-C-CCHHHHHHHHHHcCHHHHHHhCCCC-cccccCCCCCChHHHHH
Q 020527          158 IGFVGQEPQ---LL-QMDIKSNIMYG-----CPK-D-VKNEDIEWAAKQAYVHEFILSLPCG-YETLVDDDLLSGGQKQR  225 (325)
Q Consensus       158 i~~v~Q~~~---l~-~~tv~enl~~~-----~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~LSgGq~QR  225 (325)
                      ++|+||++.   +| ..|+.+|..+.     ... . ......     ...+.++++.+... ........+||||||||
T Consensus       325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr  399 (491)
T PRK10982        325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRM-----KSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQK  399 (491)
T ss_pred             CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHH-----HHHHHHHHHhcCccCCCcccccccCCcHHHHH
Confidence            999999863   55 46777663221     110 0 011111     11223344444332 11233346899999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChH
Q 020527          226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA  304 (325)
Q Consensus       226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~  304 (325)
                      |+||||++.+|+||||||||+|||+.++..+.+.+.++.+   .|.|||++|||++++.. |||+++|++|+++..++++
T Consensus       400 v~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~---~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~  476 (491)
T PRK10982        400 VIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAK---KDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTK  476 (491)
T ss_pred             HHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHH---CCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccc
Confidence            9999999999999999999999999999999999999865   37899999999999865 9999999999999888765


Q ss_pred             HH
Q 020527          305 EL  306 (325)
Q Consensus       305 ~l  306 (325)
                      +.
T Consensus       477 ~~  478 (491)
T PRK10982        477 TT  478 (491)
T ss_pred             cC
Confidence            33

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=100.00  E-value=7.2e-43  Score=324.38  Aligned_cols=228  Identities=30%  Similarity=0.439  Sum_probs=186.1

Q ss_pred             cEEEEEEEEECCCC-CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-----CCCeEEECCEeCCCCCHH
Q 020527           79 HVQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDLDIR  152 (325)
Q Consensus        79 ~i~~~~v~~~y~~~-~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-----~~G~I~i~g~~i~~~~~~  152 (325)
                      .+.++|+++.|... ....++++|||+|++||.+||||+||||||-..+.++||++.     .+|+|.|+|.++-..+..
T Consensus         6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~   85 (534)
T COG4172           6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER   85 (534)
T ss_pred             ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence            58999999998632 235799999999999999999999999999999999999974     479999999999877766


Q ss_pred             HHh----cceEEEccCCcC--cc-ccHHHHHh----cC--CCCCCCHHHHHHHHHHcCHHH---HHHhCCCCcccccCCC
Q 020527          153 WLR----EKIGFVGQEPQL--LQ-MDIKSNIM----YG--CPKDVKNEDIEWAAKQAYVHE---FILSLPCGYETLVDDD  216 (325)
Q Consensus       153 ~~r----~~i~~v~Q~~~l--~~-~tv~enl~----~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  216 (325)
                      ++|    .+|+++||+|.-  -+ .|+...+.    +-  ......++++.+.++.+++.+   .++.+|         +
T Consensus        86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yP---------H  156 (534)
T COG4172          86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYP---------H  156 (534)
T ss_pred             HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCC---------c
Confidence            665    369999999953  33 36655543    31  111122344555566665533   334444         7


Q ss_pred             CCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCC
Q 020527          217 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG  295 (325)
Q Consensus       217 ~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G  295 (325)
                      +|||||||||+||.||+.+|++||.||||.+||...+.+|+++|++++++  .|.++++||||++.++. ||||+||.+|
T Consensus       157 eLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~--~gMa~lfITHDL~iVr~~ADrV~VM~~G  234 (534)
T COG4172         157 ELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAE--LGMAILFITHDLGIVRKFADRVYVMQHG  234 (534)
T ss_pred             ccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHH--hCcEEEEEeccHHHHHHhhhhEEEEecc
Confidence            89999999999999999999999999999999999999999999999875  69999999999999976 9999999999


Q ss_pred             EEEEEcChHHHhhc-CHHHHHHH
Q 020527          296 RIIEVGNHAELLHK-GRLYAKLV  317 (325)
Q Consensus       296 ~i~~~g~~~~l~~~-~~~~~~~~  317 (325)
                      ++++.|+.++++.. .+-|.+.+
T Consensus       235 ~ivE~~~t~~lF~~PqHpYTr~L  257 (534)
T COG4172         235 EIVETGTTETLFAAPQHPYTRKL  257 (534)
T ss_pred             EEeecCcHHHHhhCCCChHHHHH
Confidence            99999999999975 45565544

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.2e-43  Score=310.59  Aligned_cols=211  Identities=25%  Similarity=0.423  Sum_probs=174.3

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCH-HHHhcc
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREK  157 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~-~~~r~~  157 (325)
                      .|+++||+++|+++   ++|+|+|++|++||.++|+|||||||||||++++|.++|++|.+.+.|+.....+. .++|++
T Consensus        31 li~l~~v~v~r~gk---~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~  107 (257)
T COG1119          31 LIELKNVSVRRNGK---KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKR  107 (257)
T ss_pred             eEEecceEEEECCE---eeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHH
Confidence            59999999999864   69999999999999999999999999999999999999999999999999876665 789999


Q ss_pred             eEEEccCCcC-c--cccHHHHHhcCC------CC-CCCHHH---HHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHH
Q 020527          158 IGFVGQEPQL-L--QMDIKSNIMYGC------PK-DVKNED---IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ  224 (325)
Q Consensus       158 i~~v~Q~~~l-~--~~tv~enl~~~~------~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~Q  224 (325)
                      ||||+-.-.. |  +.+|+|-+.-|.      +. ..++++   ....++..++.++.++         ....||-||||
T Consensus       108 IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r---------~~~~LS~Ge~r  178 (257)
T COG1119         108 IGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADR---------PFGSLSQGEQR  178 (257)
T ss_pred             hCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccC---------chhhcCHhHHH
Confidence            9999865432 3  467888875432      22 222222   2333444444443332         23579999999


Q ss_pred             HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcC
Q 020527          225 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN  302 (325)
Q Consensus       225 Rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~  302 (325)
                      ||.|||||+.+|++|||||||+|||...++.+.+.|.++... ..+.++|+|||+.+++.. .++++.+++|+++..|.
T Consensus       179 rvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~-~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~  256 (257)
T COG1119         179 RVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAAS-PGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK  256 (257)
T ss_pred             HHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcC-CCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence            999999999999999999999999999999999999999754 347899999999999976 69999999999998763

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=100.00  E-value=2.2e-43  Score=321.97  Aligned_cols=202  Identities=24%  Similarity=0.287  Sum_probs=156.5

Q ss_pred             EEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEE-----------ECCEeCCCCCH
Q 020527           83 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY-----------IDGFPLTDLDI  151 (325)
Q Consensus        83 ~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~-----------i~g~~i~~~~~  151 (325)
                      .||+|+|+.+  ..+|+|+|+ +++||+++|+||||||||||+++|+|+++|++|+|.           ++|.++.....
T Consensus         4 ~~~~~~y~~~--~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~   80 (255)
T cd03236           4 DEPVHRYGPN--SFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFT   80 (255)
T ss_pred             cCcceeecCc--chhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhH
Confidence            4788999643  259999994 999999999999999999999999999999999996           78887754422


Q ss_pred             HHHh--cceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 020527          152 RWLR--EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA  229 (325)
Q Consensus       152 ~~~r--~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA  229 (325)
                      ...+  ..++|++|++.+++.++.+|+.+........+...++++..++.+..++         ...+||||||||++||
T Consensus        81 ~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~---------~~~~LS~G~~qrv~la  151 (255)
T cd03236          81 KLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDR---------NIDQLSGGELQRVAIA  151 (255)
T ss_pred             HhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcC---------ChhhCCHHHHHHHHHH
Confidence            2222  2478999988777666667665432111112233444444444333322         2257999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEE
Q 020527          230 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEV  300 (325)
Q Consensus       230 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~  300 (325)
                      ||++.+|+++||||||++||+.++..+.+.++++.+   .++|||++|||++.+.. ||+|++|+ |++.+.
T Consensus       152 ral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~---~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~  219 (255)
T cd03236         152 AALARDADFYFFDEPSSYLDIKQRLNAARLIRELAE---DDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAY  219 (255)
T ss_pred             HHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcc
Confidence            999999999999999999999999999999999875   37899999999999875 99999995 556543

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK13409 putative ATPase RIL; Provisional

Probab=100.00  E-value=1.7e-42  Score=349.20  Aligned_cols=195  Identities=25%  Similarity=0.300  Sum_probs=164.6

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .++++|++++|++    ..|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++             ..+
T Consensus       340 ~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i  402 (590)
T PRK13409        340 LVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKI  402 (590)
T ss_pred             EEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeE
Confidence            4999999999964    25999999999999999999999999999999999999999999985             149


Q ss_pred             EEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC
Q 020527          159 GFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA  237 (325)
Q Consensus       159 ~~v~Q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~  237 (325)
                      +|+||++.++ ..||+||+.++...........++++..++.+..++.+         .+|||||||||+|||||+.+|+
T Consensus       403 ~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~---------~~LSGGe~QRvaiAraL~~~p~  473 (590)
T PRK13409        403 SYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNV---------KDLSGGELQRVAIAACLSRDAD  473 (590)
T ss_pred             EEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCc---------ccCCHHHHHHHHHHHHHhcCCC
Confidence            9999998765 68999999875211111223445666666665555443         6799999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcC
Q 020527          238 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN  302 (325)
Q Consensus       238 llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~  302 (325)
                      +|||||||++||+.++..+.++|++++++  .|+|+|+||||++++.. |||+++|++ ++...|.
T Consensus       474 llLLDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~  536 (590)
T PRK13409        474 LYLLDEPSAHLDVEQRLAVAKAIRRIAEE--REATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH  536 (590)
T ss_pred             EEEEeCCccCCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence            99999999999999999999999999753  47899999999999865 999999964 7777665

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=9.8e-43  Score=295.93  Aligned_cols=227  Identities=23%  Similarity=0.429  Sum_probs=187.9

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECC-EeCCCCCHHHH-hc
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG-FPLTDLDIRWL-RE  156 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g-~~i~~~~~~~~-r~  156 (325)
                      .++++||+++|++-   .+|+++||++.+||.-+|||||||||||++..|+|-.+|++|+++++| .++..++...+ |.
T Consensus         5 iL~~~~vsVsF~GF---~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~   81 (249)
T COG4674           5 ILYLDGVSVSFGGF---KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA   81 (249)
T ss_pred             eEEEeceEEEEcce---eeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHh
Confidence            48999999999864   699999999999999999999999999999999999999999999999 89988876544 66


Q ss_pred             ceEEEccCCcCc-cccHHHHHhcCCCCCCCHHH----HHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 020527          157 KIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNED----IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA  231 (325)
Q Consensus       157 ~i~~v~Q~~~l~-~~tv~enl~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra  231 (325)
                      .||--||.|..| ..||+||+.+....+..-..    -....++..+++.+.....+....+....||.||||++.|+..
T Consensus        82 GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMl  161 (249)
T COG4674          82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGML  161 (249)
T ss_pred             ccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhhee
Confidence            799999999999 68999999765322111100    0012222334455554444443344446799999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhcC
Q 020527          232 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG  310 (325)
Q Consensus       232 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~  310 (325)
                      ++++|++|++|||++|+-.....+.-++|+.++.    +++|++|.|||.+++. +++|-||+.|.+.+.|+.+++-+++
T Consensus       162 l~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~----~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~~dp  237 (249)
T COG4674         162 LAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG----KHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQNDP  237 (249)
T ss_pred             eccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc----CceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhhcCc
Confidence            9999999999999999999999999999999974    5699999999999976 9999999999999999999997765


Q ss_pred             HH
Q 020527          311 RL  312 (325)
Q Consensus       311 ~~  312 (325)
                      ..
T Consensus       238 ~V  239 (249)
T COG4674         238 KV  239 (249)
T ss_pred             ce
Confidence            43

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=100.00  E-value=3.2e-42  Score=288.37  Aligned_cols=143  Identities=35%  Similarity=0.612  Sum_probs=132.9

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      ++++|++++|++.   ++++++||++++||+++|+||||||||||+++|+|+++|++|+|+++|.           ..++
T Consensus         1 l~~~~l~~~~~~~---~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~   66 (144)
T cd03221           1 IELENLSKTYGGK---LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIG   66 (144)
T ss_pred             CEEEEEEEEECCc---eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEE
Confidence            4689999999753   5999999999999999999999999999999999999999999999984           3699


Q ss_pred             EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEE
Q 020527          160 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL  239 (325)
Q Consensus       160 ~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ll  239 (325)
                      |+||                                                      ||+||+||++|||||+.+|+++
T Consensus        67 ~~~~------------------------------------------------------lS~G~~~rv~laral~~~p~il   92 (144)
T cd03221          67 YFEQ------------------------------------------------------LSGGEKMRLALAKLLLENPNLL   92 (144)
T ss_pred             EEcc------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEE
Confidence            9998                                                      7999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCE
Q 020527          240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR  296 (325)
Q Consensus       240 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~  296 (325)
                      |+||||++||+.++..+.+.++++      +.|++++||+++.+.. ||++++|++|+
T Consensus        93 llDEP~~~LD~~~~~~l~~~l~~~------~~til~~th~~~~~~~~~d~v~~l~~g~  144 (144)
T cd03221          93 LLDEPTNHLDLESIEALEEALKEY------PGTVILVSHDRYFLDQVATKIIELEDGK  144 (144)
T ss_pred             EEeCCccCCCHHHHHHHHHHHHHc------CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence            999999999999999999999876      3599999999999865 99999999985

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=100.00  E-value=5.8e-42  Score=304.92  Aligned_cols=186  Identities=19%  Similarity=0.255  Sum_probs=146.4

Q ss_pred             ceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEE-ECCEeCCCCCHHHHhcceEEEccCCcCcc-ccHHH
Q 020527           97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY-IDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKS  174 (325)
Q Consensus        97 iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~-i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~tv~e  174 (325)
                      +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|. ++|..+.             +.+.+.+|+ .|++|
T Consensus         2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~-------------~~~~~~l~~~ltv~e   68 (213)
T PRK15177          2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP-------------LGANSFILPGLTGEE   68 (213)
T ss_pred             eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceec-------------cccccccCCcCcHHH
Confidence            79999999999999999999999999999999999999999997 7775321             234566664 79999


Q ss_pred             HHhcCCC-CCCCHHHHHH-HHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHH
Q 020527          175 NIMYGCP-KDVKNEDIEW-AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES  252 (325)
Q Consensus       175 nl~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~  252 (325)
                      |+.+... ......+... ..+..++.+..+..         ...||||||||++||||++.+|+++||||||+++|+.+
T Consensus        69 nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~  139 (213)
T PRK15177         69 NARMMASLYGLDGDEFSHFCYQLTQLEQCYTDR---------VSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNAT  139 (213)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhChhHHhhch---------HhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHH
Confidence            9976421 1122222221 22223333332222         25699999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhh
Q 020527          253 EHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLH  308 (325)
Q Consensus       253 ~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~  308 (325)
                      +..+.+.+.+..+    ++|+|++||+++.+. .||++++|++|++++.++.++..+
T Consensus       140 ~~~~~~~l~~~~~----~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  192 (213)
T PRK15177        140 QLRMQAALACQLQ----QKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATA  192 (213)
T ss_pred             HHHHHHHHHHHhh----CCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHH
Confidence            9999998765432    358999999999986 599999999999999999887753

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=9.8e-42  Score=343.19  Aligned_cols=203  Identities=22%  Similarity=0.335  Sum_probs=162.6

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .|+++||+++|+++   .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ +          .+|
T Consensus       324 ~l~~~~l~~~~~~~---~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~i  389 (556)
T PRK11819        324 VIEAENLSKSFGDR---LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VKL  389 (556)
T ss_pred             EEEEEeEEEEECCe---eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eEE
Confidence            59999999999753   599999999999999999999999999999999999999999999954 2          159


Q ss_pred             EEEccCC-cCc-cccHHHHHhcCCCCC-C--CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 020527          159 GFVGQEP-QLL-QMDIKSNIMYGCPKD-V--KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL  233 (325)
Q Consensus       159 ~~v~Q~~-~l~-~~tv~enl~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~  233 (325)
                      ||+||++ .++ ..|++||+.++.... .  ........++..++..        ........+||||||||++|||||+
T Consensus       390 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~--------~~~~~~~~~LSgG~~qrv~la~al~  461 (556)
T PRK11819        390 AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKG--------GDQQKKVGVLSGGERNRLHLAKTLK  461 (556)
T ss_pred             EEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCCh--------hHhcCchhhCCHHHHHHHHHHHHHh
Confidence            9999997 555 579999998753111 1  1111222333333211        1112223679999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeC-CEEE-EEcChHHHhhc
Q 020527          234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD-GRII-EVGNHAELLHK  309 (325)
Q Consensus       234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~-G~i~-~~g~~~~l~~~  309 (325)
                      .+|++|||||||++||+.++..+.+.|.++     .+ |||+||||++.+.. ||++++|++ |++. ..|+.++++++
T Consensus       462 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-----~~-tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~  534 (556)
T PRK11819        462 QGGNVLLLDEPTNDLDVETLRALEEALLEF-----PG-CAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED  534 (556)
T ss_pred             cCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-----CC-eEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence            999999999999999999999999999887     24 89999999999865 999999986 7876 46788777654

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=100.00  E-value=9.8e-42  Score=342.98  Aligned_cols=202  Identities=21%  Similarity=0.319  Sum_probs=160.6

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .++++|++++|+++   .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ +          .+|
T Consensus       322 ~l~~~~l~~~~~~~---~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~----------~~i  387 (552)
T TIGR03719       322 VIEAENLSKGFGDK---LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T----------VKL  387 (552)
T ss_pred             EEEEeeEEEEECCe---eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c----------eEE
Confidence            59999999999753   599999999999999999999999999999999999999999999954 2          159


Q ss_pred             EEEccCCc-Cc-cccHHHHHhcCCCC-CCC--HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 020527          159 GFVGQEPQ-LL-QMDIKSNIMYGCPK-DVK--NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL  233 (325)
Q Consensus       159 ~~v~Q~~~-l~-~~tv~enl~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~  233 (325)
                      ||+||++. ++ ..|++||+.++... ...  .......++..++..        ........+|||||||||+|||||+
T Consensus       388 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~--------~~~~~~~~~LSgGe~qrv~la~al~  459 (552)
T TIGR03719       388 AYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKG--------SDQQKKVGQLSGGERNRVHLAKTLK  459 (552)
T ss_pred             EEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCCh--------hHhcCchhhCCHHHHHHHHHHHHHh
Confidence            99999974 55 57999999875321 111  111222233333211        1112223679999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeC-CEEE-EEcChHHHhh
Q 020527          234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD-GRII-EVGNHAELLH  308 (325)
Q Consensus       234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~-G~i~-~~g~~~~l~~  308 (325)
                      .+|++|||||||++||+.++..+.+.|.++.     + |||+||||++.+.. ||++++|++ |+++ ..|+.+++..
T Consensus       460 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-----~-~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~  531 (552)
T TIGR03719       460 SGGNVLLLDEPTNDLDVETLRALEEALLEFA-----G-CAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE  531 (552)
T ss_pred             hCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC-----C-eEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence            9999999999999999999999999999872     3 89999999999865 999999987 5876 4577666543

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=8.9e-42  Score=287.53  Aligned_cols=233  Identities=27%  Similarity=0.447  Sum_probs=185.0

Q ss_pred             cEEEEEEEEECCCC------CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHH
Q 020527           79 HVQFVNISFHYPSR------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR  152 (325)
Q Consensus        79 ~i~~~~v~~~y~~~------~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~  152 (325)
                      -++++|++|+|..+      ....+++.|||++++|+.+||+|.||||||||.|+|+|.++|++|+|.+||.++.-.+..
T Consensus         4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~   83 (267)
T COG4167           4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYS   83 (267)
T ss_pred             hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchH
Confidence            47899999887532      124699999999999999999999999999999999999999999999999998765555


Q ss_pred             HHhcceEEEccCCcC-c--cccHHHHHhcCCC--CC----CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHH
Q 020527          153 WLREKIGFVGQEPQL-L--QMDIKSNIMYGCP--KD----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK  223 (325)
Q Consensus       153 ~~r~~i~~v~Q~~~l-~--~~tv~enl~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~  223 (325)
                      ...++|-++||||+- |  ...+-.-+..+..  ..    ...+++.+.++.+++.      |  ..+...+..||-|||
T Consensus        84 ~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~------P--dhan~~~~~la~~QK  155 (267)
T COG4167          84 FRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLL------P--DHANYYPHMLAPGQK  155 (267)
T ss_pred             hhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccC------c--cccccchhhcCchhH
Confidence            556789999999964 3  2344444433321  11    1123344455554432      2  122333467999999


Q ss_pred             HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcC
Q 020527          224 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN  302 (325)
Q Consensus       224 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~  302 (325)
                      ||||+||||+.+|+|+|.||+.++||...+.++.+++.++.++  .|.+.|+|+.++..++. +|.|+||++|++++.|+
T Consensus       156 QRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek--~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~  233 (267)
T COG4167         156 QRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEK--QGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGS  233 (267)
T ss_pred             HHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHH--hCceEEEEechhhHhhhhcccEEEEecCceeecCC
Confidence            9999999999999999999999999999999999999999864  69999999999999987 99999999999999999


Q ss_pred             hHHHhhcC--HHHHHHHHHhh
Q 020527          303 HAELLHKG--RLYAKLVKRQT  321 (325)
Q Consensus       303 ~~~l~~~~--~~~~~~~~~~~  321 (325)
                      +.++++..  .+-.+++.+.+
T Consensus       234 t~~v~a~P~~~~TkRlieShF  254 (267)
T COG4167         234 TADVLASPLHELTKRLIESHF  254 (267)
T ss_pred             hhhhhcCCccHHHHHHHHHHh
Confidence            99998753  34455555543

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=2.1e-42  Score=298.08  Aligned_cols=221  Identities=26%  Similarity=0.405  Sum_probs=177.9

Q ss_pred             EEEEEEEEECCCC--CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 020527           80 VQFVNISFHYPSR--PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK  157 (325)
Q Consensus        80 i~~~~v~~~y~~~--~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~  157 (325)
                      +.+.|+.+.|...  .++++|+++|++|++|+++.|+|.||||||||+++|+|-++|++|+|.++|.+++.++.......
T Consensus         2 i~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~   81 (263)
T COG1101           2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANL   81 (263)
T ss_pred             cccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhH
Confidence            4567777766422  13679999999999999999999999999999999999999999999999999999988777778


Q ss_pred             eEEEccCCcC--c-cccHHHHHhcCCCCC--CCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHH
Q 020527          158 IGFVGQEPQL--L-QMDIKSNIMYGCPKD--VKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIAR  230 (325)
Q Consensus       158 i~~v~Q~~~l--~-~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAr  230 (325)
                      ++-|||+|..  + ++||.||+.+...+.  ...........+....+.+..++.|+......  .-|||||||-++++.
T Consensus        82 larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~M  161 (263)
T COG1101          82 LARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLM  161 (263)
T ss_pred             HHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHH
Confidence            9999999953  4 689999997642210  00000011112223334566666666655542  469999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcC
Q 020527          231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGN  302 (325)
Q Consensus       231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~  302 (325)
                      |.++.|+||+|||-|++|||.+...+++.=.++.++  .+.|.+||||+|+.+- +.+|.++|++|+|+.+-+
T Consensus       162 Atl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~--~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~  232 (263)
T COG1101         162 ATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEE--HKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVT  232 (263)
T ss_pred             HhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHh--cCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEcc
Confidence            999999999999999999999999999999888764  4789999999999875 579999999999997643

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=100.00  E-value=2.1e-41  Score=292.21  Aligned_cols=157  Identities=29%  Similarity=0.368  Sum_probs=137.2

Q ss_pred             EEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEc
Q 020527           83 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG  162 (325)
Q Consensus        83 ~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~  162 (325)
                      .|++++|++.   .++++ +|+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+            ++|+|
T Consensus         4 ~~l~~~~~~~---~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------i~~~~   67 (177)
T cd03222           4 PDCVKRYGVF---FLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------PVYKP   67 (177)
T ss_pred             CCeEEEECCE---EEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------EEEEc
Confidence            5889999753   58888 49999999999999999999999999999999999999999853            78888


Q ss_pred             cCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEe
Q 020527          163 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLD  242 (325)
Q Consensus       163 Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllD  242 (325)
                      |++.                                                   ||||||||++||||++.+|+++|||
T Consensus        68 q~~~---------------------------------------------------LSgGq~qrv~laral~~~p~lllLD   96 (177)
T cd03222          68 QYID---------------------------------------------------LSGGELQRVAIAAALLRNATFYLFD   96 (177)
T ss_pred             ccCC---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEE
Confidence            8542                                                   7999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEE--cChHHHhh
Q 020527          243 EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEV--GNHAELLH  308 (325)
Q Consensus       243 EPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~--g~~~~l~~  308 (325)
                      |||++||+.+++.+.+.+.+++++  .+.|+|++||+++.+.. ||++++|+++-.+..  |.|....+
T Consensus        97 EPts~LD~~~~~~l~~~l~~~~~~--~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~~  163 (177)
T cd03222          97 EPSAYLDIEQRLNAARAIRRLSEE--GKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPKGTRE  163 (177)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHc--CCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCcchhH
Confidence            999999999999999999998642  24799999999999875 999999998766533  56654443

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.7e-41  Score=343.31  Aligned_cols=199  Identities=22%  Similarity=0.347  Sum_probs=161.4

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .|+++||+++|+++   .+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++.           .++
T Consensus       312 ~l~~~~l~~~y~~~---~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i  377 (638)
T PRK10636        312 LLKMEKVSAGYGDR---IILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL  377 (638)
T ss_pred             eEEEEeeEEEeCCe---eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence            59999999999753   5999999999999999999999999999999999999999999999741           269


Q ss_pred             EEEccCC--cCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHH-HHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 020527          159 GFVGQEP--QLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQKQRIAIARAILR  234 (325)
Q Consensus       159 ~~v~Q~~--~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~  234 (325)
                      ||++|++  .+. ..|+.+++... ........+...+..+++.. ..++         ....|||||||||+|||+|+.
T Consensus       378 gy~~Q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~l~~~~~~~---------~~~~LSgGekqRl~La~~l~~  447 (638)
T PRK10636        378 GYFAQHQLEFLRADESPLQHLARL-APQELEQKLRDYLGGFGFQGDKVTE---------ETRRFSGGEKARLVLALIVWQ  447 (638)
T ss_pred             EEecCcchhhCCccchHHHHHHHh-CchhhHHHHHHHHHHcCCChhHhcC---------chhhCCHHHHHHHHHHHHHhc
Confidence            9999985  233 35888876421 11112233344444444421 2222         236799999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEE-EEcChHHHh
Q 020527          235 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII-EVGNHAELL  307 (325)
Q Consensus       235 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~-~~g~~~~l~  307 (325)
                      +|++|||||||++||+.+...+.+.|.++     .| |||+||||++++.. ||+|++|++|+++ ..|++++..
T Consensus       448 ~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-----~g-tvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  516 (638)
T PRK10636        448 RPNLLLLDEPTNHLDLDMRQALTEALIDF-----EG-ALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ  516 (638)
T ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHHHHHc-----CC-eEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence            99999999999999999999999999887     24 99999999999865 9999999999997 678887763

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=100.00  E-value=1.5e-41  Score=345.25  Aligned_cols=203  Identities=28%  Similarity=0.477  Sum_probs=166.8

Q ss_pred             CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCC---CCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-c
Q 020527           94 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-Q  169 (325)
Q Consensus        94 ~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~  169 (325)
                      ++++|+|+|+++++||+++|+|||||||||||++|+|..+|.   +|+|.+||.++.   ...+++.+||++|++.++ .
T Consensus        37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~---~~~~~~~i~yv~Q~~~~~~~  113 (617)
T TIGR00955        37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID---AKEMRAISAYVQQDDLFIPT  113 (617)
T ss_pred             ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC---HHHHhhhceeeccccccCcc
Confidence            357999999999999999999999999999999999999885   899999999874   345678899999999888 5


Q ss_pred             ccHHHHHhcCCCC----CCCHHHHHHHHHHcCHHHHHHhCCC--CcccccCC----CCCChHHHHHHHHHHHHcCCCCEE
Q 020527          170 MDIKSNIMYGCPK----DVKNEDIEWAAKQAYVHEFILSLPC--GYETLVDD----DLLSGGQKQRIAIARAILRDPAIL  239 (325)
Q Consensus       170 ~tv~enl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----~~LSgGq~QRv~iAral~~~p~ll  239 (325)
                      +||+||+.|+...    ....++     +...++++++.++.  ..++.++.    ..|||||||||+|||||+.+|+++
T Consensus       114 lTV~e~l~f~~~~~~~~~~~~~~-----~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vl  188 (617)
T TIGR00955       114 LTVREHLMFQAHLRMPRRVTKKE-----KRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLL  188 (617)
T ss_pred             CcHHHHHHHHHhcCCCCCCCHHH-----HHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEE
Confidence            7999999875321    111111     11223444444433  22444442    369999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCch-HH-HhcCEEEEEeCCEEEEEcChHHHh
Q 020527          240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS-TI-KAVDRIVVIDDGRIIEVGNHAELL  307 (325)
Q Consensus       240 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~l~  307 (325)
                      +|||||+|||+.++..+.+.++++++   +|+|+|+++|+++ .+ ..||++++|++|++++.|+++++.
T Consensus       189 llDEPtsgLD~~~~~~l~~~L~~l~~---~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~  255 (617)
T TIGR00955       189 FCDEPTSGLDSFMAYSVVQVLKGLAQ---KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV  255 (617)
T ss_pred             EeeCCCcchhHHHHHHHHHHHHHHHh---CCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHH
Confidence            99999999999999999999999974   4889999999996 44 569999999999999999998874

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.7e-41  Score=340.63  Aligned_cols=209  Identities=24%  Similarity=0.350  Sum_probs=156.4

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      |+++||+++|+++   .+|+|+||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|..           .++
T Consensus         2 i~i~nls~~~g~~---~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~   67 (638)
T PRK10636          2 IVFSSLQIRRGVR---VLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLA   67 (638)
T ss_pred             EEEEEEEEEeCCc---eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEE
Confidence            7899999999753   59999999999999999999999999999999999999999999998731           377


Q ss_pred             EEccCCcCccccHHHHHhcCCCC-------------CCCHHHH---HHHH-------HHcCHHHHHHhCCCC-cccccCC
Q 020527          160 FVGQEPQLLQMDIKSNIMYGCPK-------------DVKNEDI---EWAA-------KQAYVHEFILSLPCG-YETLVDD  215 (325)
Q Consensus       160 ~v~Q~~~l~~~tv~enl~~~~~~-------------~~~~~~~---~~~~-------~~~~~~~~~~~~~~~-~~~~~~~  215 (325)
                      |++|++..+..++.+++.-....             .......   ....       ....+.++++.+... .......
T Consensus        68 ~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~  147 (638)
T PRK10636         68 WVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPV  147 (638)
T ss_pred             EEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCch
Confidence            78776433334554444211000             0000000   0000       011233455554432 1122234


Q ss_pred             CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeC
Q 020527          216 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD  294 (325)
Q Consensus       216 ~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~  294 (325)
                      .+|||||||||+|||||+.+|++|||||||++||+.+...+.+.|.++      +.|||+||||++++.. ||++++|++
T Consensus       148 ~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~------~~tviivsHd~~~l~~~~d~i~~L~~  221 (638)
T PRK10636        148 SDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY------QGTLILISHDRDFLDPIVDKIIHIEQ  221 (638)
T ss_pred             hhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC------CCeEEEEeCCHHHHHHhcCEEEEEeC
Confidence            679999999999999999999999999999999999999999988775      3599999999999865 999999999


Q ss_pred             CEEEE-EcChHHHhh
Q 020527          295 GRIIE-VGNHAELLH  308 (325)
Q Consensus       295 G~i~~-~g~~~~l~~  308 (325)
                      |++.. .|+.+....
T Consensus       222 G~i~~~~g~~~~~~~  236 (638)
T PRK10636        222 QSLFEYTGNYSSFEV  236 (638)
T ss_pred             CEEEEecCCHHHHHH
Confidence            99964 677766543

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=100.00  E-value=7.5e-41  Score=341.35  Aligned_cols=199  Identities=22%  Similarity=0.420  Sum_probs=159.3

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .|+++||+++|+++   ++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+ |.++          .|
T Consensus       319 ~l~~~~l~~~~~~~---~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i  384 (635)
T PRK11147        319 VFEMENVNYQIDGK---QLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EV  384 (635)
T ss_pred             eEEEeeeEEEECCe---EEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EE
Confidence            59999999999753   5999999999999999999999999999999999999999999998 4321          59


Q ss_pred             EEEccCC-cCc-cccHHHHHhcCCCCC-CC--HHHHHHHHHHcCHH-HHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 020527          159 GFVGQEP-QLL-QMDIKSNIMYGCPKD-VK--NEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQRIAIARAI  232 (325)
Q Consensus       159 ~~v~Q~~-~l~-~~tv~enl~~~~~~~-~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral  232 (325)
                      ||++|++ .++ ..||.||+.++.... ..  ...+...+...++. +..+         .....|||||||||+|||||
T Consensus       385 ~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~~LSgGekqRl~la~al  455 (635)
T PRK11147        385 AYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAM---------TPVKALSGGERNRLLLARLF  455 (635)
T ss_pred             EEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHh---------ChhhhCCHHHHHHHHHHHHH
Confidence            9999986 455 579999998753211 01  12222333333331 1111         22367999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEe-CCEEEEE-cChHHH
Q 020527          233 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID-DGRIIEV-GNHAEL  306 (325)
Q Consensus       233 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~-~G~i~~~-g~~~~l  306 (325)
                      +.+|++|||||||++||+.+...+.++++++      +.|||+||||.+++.. ||++++|+ +|++... |+.++.
T Consensus       456 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~------~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y  526 (635)
T PRK11147        456 LKPSNLLILDEPTNDLDVETLELLEELLDSY------QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDA  526 (635)
T ss_pred             hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC------CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence            9999999999999999999999999988876      2399999999999865 99999998 8998764 565554

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=3.8e-41  Score=366.67  Aligned_cols=212  Identities=24%  Similarity=0.426  Sum_probs=172.2

Q ss_pred             cEEEEEEEEECCCC-CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC---CCCCeEEECCEeCCCCCHHHH
Q 020527           79 HVQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE---PSDGQIYIDGFPLTDLDIRWL  154 (325)
Q Consensus        79 ~i~~~~v~~~y~~~-~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~---~~~G~I~i~g~~i~~~~~~~~  154 (325)
                      .++++||+++|+.+ ..+.+|+|||+++++||+++|+||||||||||+++|+|+.+   |++|+|.+||+++.    ..+
T Consensus       759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~  834 (1394)
T TIGR00956       759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF  834 (1394)
T ss_pred             eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence            47999999999522 13469999999999999999999999999999999999997   78899999999874    246


Q ss_pred             hcceEEEccCCcCc-cccHHHHHhcCCC----CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHH
Q 020527          155 REKIGFVGQEPQLL-QMDIKSNIMYGCP----KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQK  223 (325)
Q Consensus       155 r~~i~~v~Q~~~l~-~~tv~enl~~~~~----~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq~  223 (325)
                      |+.+|||+|++.++ ..||+||+.++..    ....+    +.+.++++..++.+..+.       .++  ...||||||
T Consensus       835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~-------~v~~~~~~LSgGqr  907 (1394)
T TIGR00956       835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADA-------VVGVPGEGLNVEQR  907 (1394)
T ss_pred             hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCC-------eeCCCCCCCCHHHh
Confidence            78899999997665 6899999987421    11122    123344444444433222       222  136999999


Q ss_pred             HHHHHHHHHcCCCC-EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHH--HhcCEEEEEeCC-EEEE
Q 020527          224 QRIAIARAILRDPA-ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI--KAVDRIVVIDDG-RIIE  299 (325)
Q Consensus       224 QRv~iAral~~~p~-llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~--~~~d~v~~l~~G-~i~~  299 (325)
                      ||++|||||+.+|+ ||+|||||+|||+.++..+.+.|+++++   +|+|||+++|+++..  ..||++++|++| ++++
T Consensus       908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~---~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~  984 (1394)
T TIGR00956       908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD---HGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVY  984 (1394)
T ss_pred             hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHH---cCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEE
Confidence            99999999999997 9999999999999999999999999964   488999999999863  569999999997 9999


Q ss_pred             EcChH
Q 020527          300 VGNHA  304 (325)
Q Consensus       300 ~g~~~  304 (325)
                      .|++.
T Consensus       985 ~G~~~  989 (1394)
T TIGR00956       985 FGDLG  989 (1394)
T ss_pred             ECCcc
Confidence            99874

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=100.00  E-value=1.6e-40  Score=281.81  Aligned_cols=155  Identities=45%  Similarity=0.749  Sum_probs=143.1

Q ss_pred             EEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 020527           82 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV  161 (325)
Q Consensus        82 ~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v  161 (325)
                      ++|+++.|+++   .+++++||+|++|++++|+||||||||||+++|+|+++|++|+|+++|.++.......+++.++|+
T Consensus         2 ~~~~~~~~~~~---~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~   78 (157)
T cd00267           2 IENLSFRYGGR---TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYV   78 (157)
T ss_pred             eEEEEEEeCCe---eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEE
Confidence            68999999753   599999999999999999999999999999999999999999999999988765556667889999


Q ss_pred             ccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEE
Q 020527          162 GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLL  241 (325)
Q Consensus       162 ~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llll  241 (325)
                      ||                                                      ||+||+||++||||++.+|++++|
T Consensus        79 ~q------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~il  104 (157)
T cd00267          79 PQ------------------------------------------------------LSGGQRQRVALARALLLNPDLLLL  104 (157)
T ss_pred             ee------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEE
Confidence            99                                                      799999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCE
Q 020527          242 DEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR  296 (325)
Q Consensus       242 DEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~  296 (325)
                      ||||++||+.++..+.+.+.++.+   .++|++++||+++.+.. ||++++|++|+
T Consensus       105 DEp~~~lD~~~~~~l~~~l~~~~~---~~~tii~~sh~~~~~~~~~d~i~~l~~g~  157 (157)
T cd00267         105 DEPTSGLDPASRERLLELLRELAE---EGRTVIIVTHDPELAELAADRVIVLKDGK  157 (157)
T ss_pred             eCCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence            999999999999999999999864   26799999999999976 79999999874

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PLN03073 ABC transporter F family; Provisional

Probab=100.00  E-value=1.6e-40  Score=340.73  Aligned_cols=199  Identities=27%  Similarity=0.433  Sum_probs=157.5

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .|+++||+++|+++  ..+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++           +.+|
T Consensus       508 ~L~~~~ls~~y~~~--~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i  574 (718)
T PLN03073        508 IISFSDASFGYPGG--PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM  574 (718)
T ss_pred             eEEEEeeEEEeCCC--CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence            59999999999642  3599999999999999999999999999999999999999999999865           2469


Q ss_pred             EEEccCCcCccccHHHHHh--cC-CCCCCCHHHHHHHHHHcCHHH-HHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 020527          159 GFVGQEPQLLQMDIKSNIM--YG-CPKDVKNEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQKQRIAIARAILR  234 (325)
Q Consensus       159 ~~v~Q~~~l~~~tv~enl~--~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~  234 (325)
                      ||+||++. ...++.+|..  +. .......+.+..+++.+++.. ...+         ....|||||||||+|||||+.
T Consensus       575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~---------~~~~LSgGqkqRvaLAraL~~  644 (718)
T PLN03073        575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ---------PMYTLSGGQKSRVAFAKITFK  644 (718)
T ss_pred             EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcC---------CccccCHHHHHHHHHHHHHhc
Confidence            99999862 2234444422  11 011223444555555555532 2222         236799999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEE-EEcChHHH
Q 020527          235 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII-EVGNHAEL  306 (325)
Q Consensus       235 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~-~~g~~~~l  306 (325)
                      +|++|||||||++||+.+...+.+.+.++     .+ |||+||||++++.. ||++++|++|+++ ..|++++.
T Consensus       645 ~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-----~g-tvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~  712 (718)
T PLN03073        645 KPHILLLDEPSNHLDLDAVEALIQGLVLF-----QG-GVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY  712 (718)
T ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHHHHHc-----CC-EEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence            99999999999999999999888887664     24 99999999999975 9999999999998 56776653

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=100.00  E-value=4.3e-40  Score=335.82  Aligned_cols=209  Identities=27%  Similarity=0.417  Sum_probs=156.7

Q ss_pred             ccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 020527           78 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK  157 (325)
Q Consensus        78 ~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~  157 (325)
                      .+|+++||+++|+++   .+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|..           .
T Consensus         2 ~~l~i~~ls~~~~~~---~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~-----------~   67 (635)
T PRK11147          2 SLISIHGAWLSFSDA---PLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL-----------I   67 (635)
T ss_pred             cEEEEeeEEEEeCCc---eeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC-----------E
Confidence            359999999999753   69999999999999999999999999999999999999999999998631           2


Q ss_pred             eEEEccCCcCc-cccHHHHHhcCC-----------------CCCCCHHHHHH---H---H-------HHcCHHHHHHhCC
Q 020527          158 IGFVGQEPQLL-QMDIKSNIMYGC-----------------PKDVKNEDIEW---A---A-------KQAYVHEFILSLP  206 (325)
Q Consensus       158 i~~v~Q~~~l~-~~tv~enl~~~~-----------------~~~~~~~~~~~---~---~-------~~~~~~~~~~~~~  206 (325)
                      +++++|.+... ..++.+++..+.                 ......+.+..   .   .       ....+.++++.+.
T Consensus        68 ~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg  147 (635)
T PRK11147         68 VARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLG  147 (635)
T ss_pred             EEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCC
Confidence            56666654321 244555432110                 00000000000   0   0       0112344555544


Q ss_pred             CCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-
Q 020527          207 CGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-  285 (325)
Q Consensus       207 ~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-  285 (325)
                      ..  .......|||||||||+|||||+.+|+||||||||++||+.+...+.+.|.++      +.|||+||||..++.. 
T Consensus       148 l~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~------~~tvlivsHd~~~l~~~  219 (635)
T PRK11147        148 LD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF------QGSIIFISHDRSFIRNM  219 (635)
T ss_pred             CC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC------CCEEEEEeCCHHHHHHh
Confidence            32  22334679999999999999999999999999999999999999999999877      2499999999999965 


Q ss_pred             cCEEEEEeCCEEEE-EcChHHHhh
Q 020527          286 VDRIVVIDDGRIIE-VGNHAELLH  308 (325)
Q Consensus       286 ~d~v~~l~~G~i~~-~g~~~~l~~  308 (325)
                      ||+|++|++|+++. .|++++.+.
T Consensus       220 ~d~i~~L~~G~i~~~~g~~~~~~~  243 (635)
T PRK11147        220 ATRIVDLDRGKLVSYPGNYDQYLL  243 (635)
T ss_pred             cCeEEEEECCEEEEecCCHHHHHH
Confidence            99999999999975 588776654

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.6e-40  Score=285.59  Aligned_cols=218  Identities=28%  Similarity=0.390  Sum_probs=179.9

Q ss_pred             cccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcC--CCCCCCeEEECCEeCCCCCHHHH
Q 020527           77 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWL  154 (325)
Q Consensus        77 ~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl--~~~~~G~I~i~g~~i~~~~~~~~  154 (325)
                      |..++++|++.+..++  +.+|++|||+|++||+.+|+||||||||||.++|+|.  |++++|+|.++|+++.++++.+.
T Consensus         1 m~~L~I~dLhv~v~~~--keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ER   78 (251)
T COG0396           1 MMMLEIKDLHVEVEGK--KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDER   78 (251)
T ss_pred             CceeEEeeeEEEecCc--hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHH
Confidence            3469999999998753  3699999999999999999999999999999999998  47899999999999999987654


Q ss_pred             -hcceEEEccCCcCcc-ccHHHHHhcCCCC--C------CCHHHHHHHHHHcCHHH-HHHhCCCCcccccCCCCCChHHH
Q 020527          155 -REKIGFVGQEPQLLQ-MDIKSNIMYGCPK--D------VKNEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQK  223 (325)
Q Consensus       155 -r~~i~~v~Q~~~l~~-~tv~enl~~~~~~--~------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~LSgGq~  223 (325)
                       |..|..-||.|.=++ .++.+.+..+...  .      .....+.+.++..++++ ++++.-.        ..+|||||
T Consensus        79 Ar~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN--------~GFSGGEk  150 (251)
T COG0396          79 ARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVN--------EGFSGGEK  150 (251)
T ss_pred             HhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccC--------CCcCcchH
Confidence             677999999998776 4888888643211  1      11223344455555444 3332211        35999999


Q ss_pred             HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh--cCEEEEEeCCEEEEEc
Q 020527          224 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVIDDGRIIEVG  301 (325)
Q Consensus       224 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~--~d~v~~l~~G~i~~~g  301 (325)
                      +|..|+.+++.+|++.|||||-||||..+-+.+.+.+.+++.   .|.++++|||.-..+..  .|+|.+|-+|+|+.+|
T Consensus       151 KR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~---~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG  227 (251)
T COG0396         151 KRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALRE---EGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSG  227 (251)
T ss_pred             HHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhc---CCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecC
Confidence            999999999999999999999999999999999999999975   48899999999999876  4999999999999999


Q ss_pred             ChHHHhh
Q 020527          302 NHAELLH  308 (325)
Q Consensus       302 ~~~~l~~  308 (325)
                      .+ ++..
T Consensus       228 ~~-el~~  233 (251)
T COG0396         228 DP-ELAE  233 (251)
T ss_pred             CH-HHHH
Confidence            99 5543

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=3.5e-40  Score=269.71  Aligned_cols=198  Identities=25%  Similarity=0.434  Sum_probs=167.9

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCC---CCeEEECCEeCCCCCHHHHh
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLDIRWLR  155 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~---~G~I~i~g~~i~~~~~~~~r  155 (325)
                      .+.++||+.+.+++   ..|-++||+|.+||++.|+||||||||||+.-+.|.+.++   +|++++|+++++.++..  +
T Consensus         2 ~l~l~nvsl~l~g~---cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~--q   76 (213)
T COG4136           2 MLCLKNVSLRLPGS---CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--Q   76 (213)
T ss_pred             ceeeeeeeecCCCc---eEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--h
Confidence            47899999888764   5899999999999999999999999999999999999875   89999999999877644  6


Q ss_pred             cceEEEccCCcCc-cccHHHHHhcCCCCCC----CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527          156 EKIGFVGQEPQLL-QMDIKSNIMYGCPKDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR  230 (325)
Q Consensus       156 ~~i~~v~Q~~~l~-~~tv~enl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr  230 (325)
                      +++|++|||+.+| ..+|.+|+.|..+...    .+.....++++.++.++..+.|         .+||||||-||++-|
T Consensus        77 Rq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP---------~tlSGGQrARvaL~R  147 (213)
T COG4136          77 RQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDP---------ATLSGGQRARVALLR  147 (213)
T ss_pred             hheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcCh---------hhcCcchHHHHHHHH
Confidence            7899999999999 5899999998764322    2233455777778877777766         579999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEE
Q 020527          231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI  292 (325)
Q Consensus       231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l  292 (325)
                      +|+.+|+.++||||+|.||..-+.++.+..-.-.+  ..|..+|+||||...+..-.||+-|
T Consensus       148 ~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r--~agiPtv~VTHD~~DvpagsrVie~  207 (213)
T COG4136         148 ALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVR--AAGIPTVQVTHDLQDVPAGSRVIEM  207 (213)
T ss_pred             HHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHH--hcCCCeEEEecccccCCCCCeeeee
Confidence            99999999999999999999999999887644333  3589999999999988765676655

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=100.00  E-value=1.4e-39  Score=321.55  Aligned_cols=211  Identities=32%  Similarity=0.497  Sum_probs=165.2

Q ss_pred             cccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhc
Q 020527           77 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE  156 (325)
Q Consensus        77 ~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~  156 (325)
                      |..|+++|++++|+++   ++|+|+||+|.+|+++||||+||||||||||+|+|...|++|+|...+.           .
T Consensus         1 m~~i~~~~ls~~~g~~---~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~   66 (530)
T COG0488           1 MSMITLENLSLAYGDR---PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------L   66 (530)
T ss_pred             CceEEEeeeEEeeCCc---eeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------c
Confidence            3469999999999754   6999999999999999999999999999999999999999999987641           2


Q ss_pred             ceEEEccCCcCcc-ccHHHHHhcCCCCCCC-HHHHHHHH------------------H-------HcCHHHHHHhCCCCc
Q 020527          157 KIGFVGQEPQLLQ-MDIKSNIMYGCPKDVK-NEDIEWAA------------------K-------QAYVHEFILSLPCGY  209 (325)
Q Consensus       157 ~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~-~~~~~~~~------------------~-------~~~~~~~~~~~~~~~  209 (325)
                      +++|++|++.+.+ .||.+.+..+...... ..+...+.                  .       ...+...+..++...
T Consensus        67 ~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~  146 (530)
T COG0488          67 RVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPD  146 (530)
T ss_pred             eEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCc
Confidence            5999999999884 6999998765311000 00000000                  0       012233444433322


Q ss_pred             ccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCE
Q 020527          210 ETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDR  288 (325)
Q Consensus       210 ~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~  288 (325)
                      . .....+||||||.||+|||||+.+|++|||||||++||..+...+.+.|..+     .| |+|+||||-.++.. |++
T Consensus       147 ~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-----~g-tviiVSHDR~FLd~V~t~  219 (530)
T COG0488         147 E-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-----PG-TVIVVSHDRYFLDNVATH  219 (530)
T ss_pred             c-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-----CC-cEEEEeCCHHHHHHHhhh
Confidence            2 2233679999999999999999999999999999999999999999998876     46 99999999999976 999


Q ss_pred             EEEEeCCEEEE-EcChHHHhh
Q 020527          289 IVVIDDGRIIE-VGNHAELLH  308 (325)
Q Consensus       289 v~~l~~G~i~~-~g~~~~l~~  308 (325)
                      |+.++.|++.. .|+.+..+.
T Consensus       220 I~~ld~g~l~~y~Gny~~~~~  240 (530)
T COG0488         220 ILELDRGKLTPYKGNYSSYLE  240 (530)
T ss_pred             eEEecCCceeEecCCHHHHHH
Confidence            99999999865 456665544

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=7.7e-40  Score=291.06  Aligned_cols=202  Identities=27%  Similarity=0.441  Sum_probs=157.4

Q ss_pred             CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEc-cCCcCc-cccH
Q 020527           95 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG-QEPQLL-QMDI  172 (325)
Q Consensus        95 ~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~-Q~~~l~-~~tv  172 (325)
                      .++++|+||+|++|++++++|||||||||++|+|.|++.|++|.|.++|.+.-. ..++.-+++++|+ |..++. ...+
T Consensus        37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~-~~~~~~~~~~~v~gqk~ql~Wdlp~  115 (325)
T COG4586          37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR-RREEYLRSIGLVMGQKLQLWWDLPA  115 (325)
T ss_pred             hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcch-hHHHHHHHHHHHhhhhheeeeechh
Confidence            458999999999999999999999999999999999999999999999987543 2334445677776 444443 3334


Q ss_pred             HHHHh-----cCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCC
Q 020527          173 KSNIM-----YGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSA  247 (325)
Q Consensus       173 ~enl~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~  247 (325)
                      .|-+.     +..+.....++.....+..+++.++...         ...||-|||.|+.||.||+++|+||+|||||-|
T Consensus       116 ~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~---------vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvg  186 (325)
T COG4586         116 LDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWP---------VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVG  186 (325)
T ss_pred             hhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhh---------hhhccchHHHHHHHHHHhcCCCcEEEecCCccC
Confidence            33332     1111111122333333444444443322         256999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527          248 LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH  308 (325)
Q Consensus       248 LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~  308 (325)
                      ||..++..+.+.+++..++  .+.||+++||+++.+.. ||||+.|+.|+++.+|+..++..
T Consensus       187 LDV~aq~~ir~Flke~n~~--~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~  246 (325)
T COG4586         187 LDVNAQANIREFLKEYNEE--RQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQE  246 (325)
T ss_pred             cchhHHHHHHHHHHHHHHh--hCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHH
Confidence            9999999999999999874  58999999999998865 99999999999999999888754

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=100.00  E-value=5e-39  Score=277.21  Aligned_cols=155  Identities=30%  Similarity=0.417  Sum_probs=125.9

Q ss_pred             CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHH
Q 020527           95 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS  174 (325)
Q Consensus        95 ~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~e  174 (325)
                      +++|+|+||+|++|++++|+||||||||||||++.    +++|++.++|.. ...    .++.++|++|           
T Consensus         8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~~----~~~~~~~~~q-----------   67 (176)
T cd03238           8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PKF----SRNKLIFIDQ-----------   67 (176)
T ss_pred             eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-ccc----ccccEEEEhH-----------
Confidence            46999999999999999999999999999999985    379999998762 111    1345888877           


Q ss_pred             HHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcc-cccCCCCCChHHHHHHHHHHHHcCC--CCEEEEeCCCCCCCHH
Q 020527          175 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE-TLVDDDLLSGGQKQRIAIARAILRD--PAILLLDEATSALDSE  251 (325)
Q Consensus       175 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~LSgGq~QRv~iAral~~~--p~llllDEPts~LD~~  251 (325)
                                     .+.++..+         .+.. ......+||||||||++||||++.+  |+++||||||++||+.
T Consensus        68 ---------------~~~l~~~~---------L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~  123 (176)
T cd03238          68 ---------------LQFLIDVG---------LGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQ  123 (176)
T ss_pred             ---------------HHHHHHcC---------CCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHH
Confidence                           01222222         2211 1122367999999999999999999  9999999999999999


Q ss_pred             HHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCE
Q 020527          252 SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR  296 (325)
Q Consensus       252 ~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~  296 (325)
                      +++.+.+.++++++   .|+|||++||+++.+..||++++|++|+
T Consensus       124 ~~~~l~~~l~~~~~---~g~tvIivSH~~~~~~~~d~i~~l~~g~  165 (176)
T cd03238         124 DINQLLEVIKGLID---LGNTVILIEHNLDVLSSADWIIDFGPGS  165 (176)
T ss_pred             HHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHhCCEEEEECCCC
Confidence            99999999999864   4889999999999887799999997654

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=5e-39  Score=349.66  Aligned_cols=216  Identities=25%  Similarity=0.420  Sum_probs=172.0

Q ss_pred             cEEEEEEEEECCCC----------CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC--CCCeEEECCEeC
Q 020527           79 HVQFVNISFHYPSR----------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDGQIYIDGFPL  146 (325)
Q Consensus        79 ~i~~~~v~~~y~~~----------~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~--~~G~I~i~g~~i  146 (325)
                      .+.++||++..+.+          ..+.+|+|||+++++|++++|+|||||||||||++|+|..++  .+|+|.++|.+.
T Consensus       867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~  946 (1470)
T PLN03140        867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK  946 (1470)
T ss_pred             eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence            48999999987421          123699999999999999999999999999999999999763  789999999875


Q ss_pred             CCCCHHHHhcceEEEccCCcCc-cccHHHHHhcCC----CCCCCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCC
Q 020527          147 TDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGC----PKDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDL  217 (325)
Q Consensus       147 ~~~~~~~~r~~i~~v~Q~~~l~-~~tv~enl~~~~----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (325)
                      .   ...+++.+||++|++.++ ..||+||+.++.    +.....+    .+.+.++..++.+..+... |.   .....
T Consensus       947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~v-g~---~~~~~ 1019 (1470)
T PLN03140        947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIV-GL---PGVTG 1019 (1470)
T ss_pred             C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCcc-CC---CCCCC
Confidence            4   234567899999998777 589999998742    1111211    2344555555544433221 10   01246


Q ss_pred             CChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchH-H-HhcCEEEEEeC-
Q 020527          218 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST-I-KAVDRIVVIDD-  294 (325)
Q Consensus       218 LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~-~-~~~d~v~~l~~-  294 (325)
                      |||||||||+|||+|+.+|++|+|||||+|||+.++..+++.|+++++   .|+|||+++|+++. + ..||++++|++ 
T Consensus      1020 LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~---~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140       1020 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD---TGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred             cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence            999999999999999999999999999999999999999999999975   48899999999984 4 56999999996 


Q ss_pred             CEEEEEcChH
Q 020527          295 GRIIEVGNHA  304 (325)
Q Consensus       295 G~i~~~g~~~  304 (325)
                      |+++..|++.
T Consensus      1097 G~~v~~G~~~ 1106 (1470)
T PLN03140       1097 GQVIYSGPLG 1106 (1470)
T ss_pred             CEEEEECCcc
Confidence            8999999864

>PRK13409 putative ATPase RIL; Provisional

Probab=100.00  E-value=9.4e-40  Score=329.37  Aligned_cols=191  Identities=23%  Similarity=0.264  Sum_probs=153.4

Q ss_pred             EEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEE-----------ECCEeCCCCCHH-
Q 020527           85 ISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY-----------IDGFPLTDLDIR-  152 (325)
Q Consensus        85 v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~-----------i~g~~i~~~~~~-  152 (325)
                      ++++|+.+  ..+|++++ .+++||++||+||||||||||+|+|+|+++|++|+|.           ++|+++..+... 
T Consensus        79 ~~~~yg~~--~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~  155 (590)
T PRK13409         79 PVHRYGVN--GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL  155 (590)
T ss_pred             ceEEecCC--ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence            88999753  35999999 8999999999999999999999999999999999998           899887543211 


Q ss_pred             -HHhcceEEEcc----CCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 020527          153 -WLREKIGFVGQ----EPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA  227 (325)
Q Consensus       153 -~~r~~i~~v~Q----~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~  227 (325)
                       ..+.++++.+|    .|.+|.+||.||+...    ...+.+.++++..++....++..         .+|||||||||+
T Consensus       156 ~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~----~~~~~~~~~l~~l~l~~~~~~~~---------~~LSgGe~qrv~  222 (590)
T PRK13409        156 YNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV----DERGKLDEVVERLGLENILDRDI---------SELSGGELQRVA  222 (590)
T ss_pred             hccCcceeecccchhhhhhhhcchHHHHHHhh----hHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHH
Confidence             11233555555    4555667999999742    11234455555555544433332         579999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCC
Q 020527          228 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG  295 (325)
Q Consensus       228 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G  295 (325)
                      |||||+.+|++|||||||++||+.++..+.+.|+++.   + |+|||+||||++.+.. ||+|++|+++
T Consensus       223 ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~---~-g~tvIivsHd~~~l~~~~D~v~vl~~~  287 (590)
T PRK13409        223 IAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELA---E-GKYVLVVEHDLAVLDYLADNVHIAYGE  287 (590)
T ss_pred             HHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH---C-CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence            9999999999999999999999999999999999985   3 7899999999999865 9999999873

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=2.6e-38  Score=278.71  Aligned_cols=192  Identities=27%  Similarity=0.417  Sum_probs=158.7

Q ss_pred             CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHH
Q 020527           94 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIK  173 (325)
Q Consensus        94 ~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~  173 (325)
                      ..++|+||||++++||.+||+|+||||||||+|+|+|.++|++|+|.++|+--.-+.     -..|+-      .+.|.+
T Consensus        39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~-----lg~Gf~------pelTGr  107 (249)
T COG1134          39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIE-----LGAGFD------PELTGR  107 (249)
T ss_pred             eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhh-----cccCCC------cccchH
Confidence            357999999999999999999999999999999999999999999999996421111     112221      247999


Q ss_pred             HHHhc-----CCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCC
Q 020527          174 SNIMY-----GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSAL  248 (325)
Q Consensus       174 enl~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~L  248 (325)
                      ||+.+     |......++...+..+-+.+.++++..-         .++|.||+-|+++|-|...+|+|||+||..+..
T Consensus       108 eNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~Pv---------ktYSSGM~aRLaFsia~~~~pdILllDEvlavG  178 (249)
T COG1134         108 ENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPV---------KTYSSGMYARLAFSVATHVEPDILLLDEVLAVG  178 (249)
T ss_pred             HHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCch---------hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcC
Confidence            99854     3222223444555666667777766533         569999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527          249 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH  308 (325)
Q Consensus       249 D~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~  308 (325)
                      |+.-+++-.+.+.++.+   +++|+|+||||++.++. |||+++|++|++...|+++++..
T Consensus       179 D~~F~~K~~~rl~e~~~---~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~  236 (249)
T COG1134         179 DAAFQEKCLERLNELVE---KNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP  236 (249)
T ss_pred             CHHHHHHHHHHHHHHHH---cCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHH
Confidence            99999999999999864   36899999999999975 99999999999999999999875

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=7.4e-39  Score=348.77  Aligned_cols=205  Identities=21%  Similarity=0.286  Sum_probs=161.8

Q ss_pred             CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCC----CCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-c
Q 020527           95 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY----EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-Q  169 (325)
Q Consensus        95 ~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~----~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~  169 (325)
                      +++|+|+|+++++||+++|+||||||||||||+|+|+.    +|.+|+|.+||+++.+.. ...|+.++|++|++.++ .
T Consensus        74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~  152 (1394)
T TIGR00956        74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH  152 (1394)
T ss_pred             ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence            46999999999999999999999999999999999986    579999999999875432 33566799999998877 5


Q ss_pred             ccHHHHHhcCCC----C----CCCHHHHHHHHHHcCHHHHHHhCCCC--cccccC---CCCCChHHHHHHHHHHHHcCCC
Q 020527          170 MDIKSNIMYGCP----K----DVKNEDIEWAAKQAYVHEFILSLPCG--YETLVD---DDLLSGGQKQRIAIARAILRDP  236 (325)
Q Consensus       170 ~tv~enl~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~LSgGq~QRv~iAral~~~p  236 (325)
                      .||+||+.|+..    .    ....++..+.    ..+..++.+...  .++.++   ...|||||||||+|||||+.+|
T Consensus       153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p  228 (1394)
T TIGR00956       153 LTVGETLDFAARCKTPQNRPDGVSREEYAKH----IADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGA  228 (1394)
T ss_pred             CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHH----HHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCC
Confidence            899999987521    0    1111111100    011223332221  122222   2569999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCc-hHH-HhcCEEEEEeCCEEEEEcChHHH
Q 020527          237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL-STI-KAVDRIVVIDDGRIIEVGNHAEL  306 (325)
Q Consensus       237 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~-~~~-~~~d~v~~l~~G~i~~~g~~~~l  306 (325)
                      ++++|||||+|||+.++..+.+.|++++++  .|+|+|+++|++ +.+ ..+|+|++|++|+++..|+++++
T Consensus       229 ~vlllDEPTsgLD~~~~~~i~~~L~~la~~--~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~  298 (1394)
T TIGR00956       229 KIQCWDNATRGLDSATALEFIRALKTSANI--LDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKA  298 (1394)
T ss_pred             CEEEEeCCCCCcCHHHHHHHHHHHHHHHHh--cCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHH
Confidence            999999999999999999999999999753  488999999997 455 45999999999999999999876

>PLN03073 ABC transporter F family; Provisional

Probab=100.00  E-value=3.4e-38  Score=323.63  Aligned_cols=221  Identities=22%  Similarity=0.297  Sum_probs=159.3

Q ss_pred             ccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCC---CCCCCeEEECCEeCCCC--CH-
Q 020527           78 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY---EPSDGQIYIDGFPLTDL--DI-  151 (325)
Q Consensus        78 ~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~---~~~~G~I~i~g~~i~~~--~~-  151 (325)
                      ..|+++|++|+|+++   .+|+|+||+|++|+++||+||||||||||||+|+|..   .|++|+|.+.++++...  +. 
T Consensus       176 ~~I~i~nls~~y~~~---~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~  252 (718)
T PLN03073        176 KDIHMENFSISVGGR---DLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTAL  252 (718)
T ss_pred             eeEEEceEEEEeCCC---EEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHH
Confidence            359999999999753   5999999999999999999999999999999999864   57899998766543211  11 


Q ss_pred             -----------HHHhcceEEEccCCcCccccHHHHHhcCCCCCCC----HHHHHHHHHHcC----------HHHHHHhCC
Q 020527          152 -----------RWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVK----NEDIEWAAKQAY----------VHEFILSLP  206 (325)
Q Consensus       152 -----------~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~----~~~~~~~~~~~~----------~~~~~~~~~  206 (325)
                                 ..+++.+++++|++.+...++.+|..........    .+++.++.+..+          +...+..+.
T Consensus       253 ~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lg  332 (718)
T PLN03073        253 QCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLS  332 (718)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCC
Confidence                       1124458889988765433333333221110001    112222222221          223344433


Q ss_pred             CC-cccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh
Q 020527          207 CG-YETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA  285 (325)
Q Consensus       207 ~~-~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~  285 (325)
                      .. ........+|||||||||+|||||+.+|++|||||||++||+.+...+.+.|+++      +.|+|+||||++.+..
T Consensus       333 l~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~------~~tviivsHd~~~l~~  406 (718)
T PLN03073        333 FTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW------PKTFIVVSHAREFLNT  406 (718)
T ss_pred             CChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc------CCEEEEEECCHHHHHH
Confidence            21 1112223679999999999999999999999999999999999999999999876      4699999999999865


Q ss_pred             -cCEEEEEeCCEEE-EEcChHHHh
Q 020527          286 -VDRIVVIDDGRII-EVGNHAELL  307 (325)
Q Consensus       286 -~d~v~~l~~G~i~-~~g~~~~l~  307 (325)
                       ||++++|++|++. ..|+.+.+.
T Consensus       407 ~~d~i~~l~~g~i~~~~g~~~~~~  430 (718)
T PLN03073        407 VVTDILHLHGQKLVTYKGDYDTFE  430 (718)
T ss_pred             hCCEEEEEECCEEEEeCCCHHHHH
Confidence             9999999999996 567766544

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.6e-38  Score=264.63  Aligned_cols=227  Identities=25%  Similarity=0.418  Sum_probs=173.4

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCE-----eCCCCCHHH
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF-----PLTDLDIRW  153 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~-----~i~~~~~~~  153 (325)
                      -+++.++++.|++.   ...+||||++.|||+.+|+|+|||||||||++|++-+.|++|+|.+.-.     ++-.++..+
T Consensus         6 LL~V~~lsk~Yg~~---~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae   82 (258)
T COG4107           6 LLSVSGLSKLYGPG---KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE   82 (258)
T ss_pred             ceeehhhhhhhCCC---cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence            48999999999864   5899999999999999999999999999999999999999999999652     222333222


Q ss_pred             ----HhcceEEEccCCcC-cc------ccHHHHHh-cCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccc-cCCCCCCh
Q 020527          154 ----LREKIGFVGQEPQL-LQ------MDIKSNIM-YGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETL-VDDDLLSG  220 (325)
Q Consensus       154 ----~r~~i~~v~Q~~~l-~~------~tv~enl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~LSg  220 (325)
                          +|...|+|.|+|.- +.      .+|-|-++ .|. ++..  .+..     ...+++++........ -.+..+||
T Consensus        83 RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~-RHYG--~iR~-----~a~~WL~~VEI~~~RiDD~PrtFSG  154 (258)
T COG4107          83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGA-RHYG--NIRA-----EAQDWLEEVEIDLDRIDDLPRTFSG  154 (258)
T ss_pred             HHHHhhhccceeecCccccceeeeccCCccchhHHhhhh-hhhh--hHHH-----HHHHHHHhcccCcccccCcccccch
Confidence                35569999999942 22      23333332 221 1111  1111     1123343332221111 11357999


Q ss_pred             HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEE
Q 020527          221 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIE  299 (325)
Q Consensus       221 Gq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~  299 (325)
                      |++||+.|||-|+..|+++++||||.|||...+.+++++++.+..+  -+.++++||||+..++. +||.++|++|++++
T Consensus       155 GMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~--l~la~viVTHDl~VarLla~rlmvmk~g~vve  232 (258)
T COG4107         155 GMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRE--LGLAVVIVTHDLAVARLLADRLMVMKQGQVVE  232 (258)
T ss_pred             HHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHh--cCceEEEEechhHHHHHhhhcceeecCCCEec
Confidence            9999999999999999999999999999999999999999999875  58899999999999986 99999999999999


Q ss_pred             EcChHHHhhc-CHHHHHHHH
Q 020527          300 VGNHAELLHK-GRLYAKLVK  318 (325)
Q Consensus       300 ~g~~~~l~~~-~~~~~~~~~  318 (325)
                      .|-.+.++.. ..-|.+++-
T Consensus       233 ~GLTDrvLDDP~hPYTQLLV  252 (258)
T COG4107         233 SGLTDRVLDDPHHPYTQLLV  252 (258)
T ss_pred             cccccccccCCCCchHHHHH
Confidence            9999988875 445766654

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=4.3e-38  Score=342.36  Aligned_cols=208  Identities=22%  Similarity=0.371  Sum_probs=164.6

Q ss_pred             CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCC---CCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cc
Q 020527           95 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QM  170 (325)
Q Consensus        95 ~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~  170 (325)
                      +.+|+|+|+.|++||+++|+||||||||||||+|+|+++|+   +|+|.+||.++.+..   .++.++|++|++.++ .+
T Consensus       178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l  254 (1470)
T PLN03140        178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGVM  254 (1470)
T ss_pred             ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCcC
Confidence            46999999999999999999999999999999999999998   999999999886542   267899999998777 58


Q ss_pred             cHHHHHhcCCCCC-----------CCHHH----------HHHHHHH---------cCHHHHHHhCCCCc--ccccC---C
Q 020527          171 DIKSNIMYGCPKD-----------VKNED----------IEWAAKQ---------AYVHEFILSLPCGY--ETLVD---D  215 (325)
Q Consensus       171 tv~enl~~~~~~~-----------~~~~~----------~~~~~~~---------~~~~~~~~~~~~~~--~~~~~---~  215 (325)
                      ||+||+.|+....           ...++          +....+.         ...+..++.+....  ++.++   .
T Consensus       255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~  334 (1470)
T PLN03140        255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI  334 (1470)
T ss_pred             cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence            9999998742100           00000          0000000         01234555544322  23232   2


Q ss_pred             CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCch-HH-HhcCEEEEEe
Q 020527          216 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS-TI-KAVDRIVVID  293 (325)
Q Consensus       216 ~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~-~~-~~~d~v~~l~  293 (325)
                      ..|||||||||+||++|+.+|+++++||||+|||+.++.++.+.|+++++.  .|+|+|+++|++. .+ ..||+|++|+
T Consensus       335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~--~g~Tviis~Hqp~~~i~~lfD~vilL~  412 (1470)
T PLN03140        335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHL--TEATVLMSLLQPAPETFDLFDDIILLS  412 (1470)
T ss_pred             cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHh--cCCEEEEEecCCCHHHHHHhheEEEee
Confidence            579999999999999999999999999999999999999999999999753  4789999999974 55 4599999999


Q ss_pred             CCEEEEEcChHHHh
Q 020527          294 DGRIIEVGNHAELL  307 (325)
Q Consensus       294 ~G~i~~~g~~~~l~  307 (325)
                      +|+++..|+++++.
T Consensus       413 ~G~ivy~G~~~~~~  426 (1470)
T PLN03140        413 EGQIVYQGPRDHIL  426 (1470)
T ss_pred             CceEEEeCCHHHHH
Confidence            99999999988775

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=3.7e-37  Score=311.35  Aligned_cols=219  Identities=32%  Similarity=0.499  Sum_probs=177.3

Q ss_pred             cEEEEEEEEECCCCC--CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC---CCCeEEECCEeCCCCCHHH
Q 020527           79 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP---SDGQIYIDGFPLTDLDIRW  153 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~--~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~---~~G~I~i~g~~i~~~~~~~  153 (325)
                      .+.++|++...+++.  .+++|+|||.++++||++||+|||||||||||++|+|-.+.   .+|+|.+||++.   +.+.
T Consensus        25 ~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~---~~~~  101 (613)
T KOG0061|consen   25 KLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPR---DSRS  101 (613)
T ss_pred             eeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccC---chhh
Confidence            488999998876542  36899999999999999999999999999999999999874   799999999653   3466


Q ss_pred             HhcceEEEccCCcCc-cccHHHHHhcCC----CCCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHH
Q 020527          154 LREKIGFVGQEPQLL-QMDIKSNIMYGC----PKDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ  224 (325)
Q Consensus       154 ~r~~i~~v~Q~~~l~-~~tv~enl~~~~----~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~Q  224 (325)
                      +++.+|||.|+..++ ..||+|++.|..    +....    ++++++..+..++....+....+.    ....+|||||+
T Consensus       102 ~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~----~~rgiSGGErk  177 (613)
T KOG0061|consen  102 FRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNP----GIRGLSGGERK  177 (613)
T ss_pred             hhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCC----CCCccccchhh
Confidence            788999999999988 589999997642    21111    233444444444443322221100    01469999999


Q ss_pred             HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchH-H-HhcCEEEEEeCCEEEEEcC
Q 020527          225 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST-I-KAVDRIVVIDDGRIIEVGN  302 (325)
Q Consensus       225 Rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~-~-~~~d~v~~l~~G~i~~~g~  302 (325)
                      ||+||.-|+.+|.||++||||+|||..++.++.+.|+++++   +|+|||++-|.++. + ...|++++|.+|+++..|+
T Consensus       178 Rvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~---~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~  254 (613)
T KOG0061|consen  178 RVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLAR---SGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGS  254 (613)
T ss_pred             HHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHh---CCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecC
Confidence            99999999999999999999999999999999999999986   39999999999973 3 5699999999999999999


Q ss_pred             hHHHh
Q 020527          303 HAELL  307 (325)
Q Consensus       303 ~~~l~  307 (325)
                      ++++.
T Consensus       255 ~~~~~  259 (613)
T KOG0061|consen  255 PRELL  259 (613)
T ss_pred             HHHHH
Confidence            98764

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.3e-38  Score=264.37  Aligned_cols=189  Identities=24%  Similarity=0.391  Sum_probs=157.3

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      ++.+|++...+.   ..++.++||++.+||.+-|.||||||||||||+|+|+.+|++|+|+|+|.++.... +..++.+-
T Consensus         3 L~a~~L~~~R~e---~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~-~~~~~~l~   78 (209)
T COG4133           3 LEAENLSCERGE---RTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYHQALL   78 (209)
T ss_pred             chhhhhhhccCc---ceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccch-hhHHHHHH
Confidence            678899887764   36999999999999999999999999999999999999999999999999887543 33467788


Q ss_pred             EEccCCcCc-cccHHHHHhcCCC--CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 020527          160 FVGQEPQLL-QMDIKSNIMYGCP--KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP  236 (325)
Q Consensus       160 ~v~Q~~~l~-~~tv~enl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p  236 (325)
                      |+-..+-+- .+|++||+.|...  .......+.+++..+++..+.+ +|        ..+||-|||+||+|||-++..+
T Consensus        79 yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~d-lp--------~~~LSAGQqRRvAlArL~ls~~  149 (209)
T COG4133          79 YLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLED-LP--------VGQLSAGQQRRVALARLWLSPA  149 (209)
T ss_pred             HhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccc-cc--------hhhcchhHHHHHHHHHHHcCCC
Confidence            998888775 6899999987421  1123566777888877765433 23        2579999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH
Q 020527          237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK  284 (325)
Q Consensus       237 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~  284 (325)
                      +++||||||++||......+-.++....+   +|-.||.+||....+.
T Consensus       150 pLWiLDEP~taLDk~g~a~l~~l~~~H~~---~GGiVllttHq~l~~~  194 (209)
T COG4133         150 PLWILDEPFTALDKEGVALLTALMAAHAA---QGGIVLLTTHQPLPIA  194 (209)
T ss_pred             CceeecCcccccCHHHHHHHHHHHHHHhc---CCCEEEEecCCccCCC
Confidence            99999999999999999999999988765   4668999999875543

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=100.00  E-value=1e-35  Score=293.46  Aligned_cols=268  Identities=22%  Similarity=0.292  Sum_probs=217.8

Q ss_pred             hHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCC----CCccccccc-cc---cCCc
Q 020527            6 GGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLP----SNQFLSEGV-KL---QRLM   77 (325)
Q Consensus         6 g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~----~~~~~~~~~-~~---~~~~   77 (325)
                      ++-..+.|+++.|.+......+..+...+.-+...+..+..-.+...|+.++...-.    +...+.+.. ..   ....
T Consensus       311 ~ap~~f~g~i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~  390 (604)
T COG4178         311 AAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNAD  390 (604)
T ss_pred             ccHhhhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCccccccccccccc
Confidence            344567899999999988888889999999999999999999999999998864321    110111100 00   1012


Q ss_pred             ccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 020527           78 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK  157 (325)
Q Consensus        78 ~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~  157 (325)
                      ..|+++|++..-++.  ...+++.||+|++||.+.|.||||||||||+|+|+|+.|.-+|+|.+-.           -..
T Consensus       391 ~~i~~~nl~l~~p~~--~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~  457 (604)
T COG4178         391 HGITLENLSLRTPDG--QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSA  457 (604)
T ss_pred             ceeEEeeeeEECCCC--CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCc
Confidence            469999999998764  3799999999999999999999999999999999999999999886531           135


Q ss_pred             eEEEccCCcCccccHHHHHhcCCCC-CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 020527          158 IGFVGQEPQLLQMDIKSNIMYGCPK-DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP  236 (325)
Q Consensus       158 i~~v~Q~~~l~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p  236 (325)
                      +-|+||.|++..+|.+|-|+++... ...++++.+++.++++.++.+++.... .  -...||+|||||+++||.|+++|
T Consensus       458 ~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~-~--W~~vLS~GEqQRlafARilL~kP  534 (604)
T COG4178         458 LLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEED-R--WDRVLSGGEQQRLAFARLLLHKP  534 (604)
T ss_pred             eEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccC-c--HhhhcChhHHHHHHHHHHHHcCC
Confidence            8999999999999999999998644 367888999999999999998865221 1  12469999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEe
Q 020527          237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVID  293 (325)
Q Consensus       237 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~  293 (325)
                      ++++|||.||+||+.++..+.+.+++-.    .+.|||-|.|+.......++.+-+.
T Consensus       535 ~~v~LDEATsALDe~~e~~l~q~l~~~l----p~~tvISV~Hr~tl~~~h~~~l~l~  587 (604)
T COG4178         535 KWVFLDEATSALDEETEDRLYQLLKEEL----PDATVISVGHRPTLWNFHSRQLELL  587 (604)
T ss_pred             CEEEEecchhccChHHHHHHHHHHHhhC----CCCEEEEeccchhhHHHHhhheeec
Confidence            9999999999999999999999997742    4789999999998877766655553

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=100.00  E-value=2.2e-36  Score=317.44  Aligned_cols=215  Identities=22%  Similarity=0.406  Sum_probs=181.5

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCC-CHHHHhcc
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL-DIRWLREK  157 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~-~~~~~r~~  157 (325)
                      .+.++|+++.|+.+.  .+++++|+.|++||+.|+.|+|||||||++++|.|..+|++|+++++|.++... +....++.
T Consensus       564 ~~~~~~L~k~y~~~~--~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~  641 (885)
T KOG0059|consen  564 ALVLNNLSKVYGGKD--GAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQ  641 (885)
T ss_pred             eEEEcceeeeecchh--hhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhh
Confidence            589999999998652  299999999999999999999999999999999999999999999999998653 23347889


Q ss_pred             eEEEccCCcCc-cccHHHHHhcC-CCCCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 020527          158 IGFVGQEPQLL-QMDIKSNIMYG-CPKDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA  231 (325)
Q Consensus       158 i~~v~Q~~~l~-~~tv~enl~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra  231 (325)
                      +||+||...++ .+|.+|.+.+- +-+...    .+.+...++..++.+..+.         ..+.+|||+|+|+++|-|
T Consensus       642 iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~---------~~~~ySgG~kRkLs~aia  712 (885)
T KOG0059|consen  642 LGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANK---------QVRTYSGGNKRRLSFAIA  712 (885)
T ss_pred             cccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhcc---------chhhCCCcchhhHHHHHH
Confidence            99999999988 58999999652 111111    2223444444444443333         236799999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHh
Q 020527          232 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL  307 (325)
Q Consensus       232 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~  307 (325)
                      ++.+|++++|||||+|+||.+++.+.+++.++++   .|+++|++||.+++++. |||+.+|.+|++.+.|+++++-
T Consensus       713 lig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k---~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LK  786 (885)
T KOG0059|consen  713 LIGDPSVILLDEPSTGLDPKARRHLWDIIARLRK---NGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELK  786 (885)
T ss_pred             HhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHH
Confidence            9999999999999999999999999999999986   35699999999999986 9999999999999999999884

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.7e-35  Score=274.47  Aligned_cols=266  Identities=26%  Similarity=0.299  Sum_probs=210.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEEEEEEEEECCCCCCCCcee
Q 020527           20 LTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILN   99 (325)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~iL~   99 (325)
                      .+.+.+..-.+-.|+.+++..+..+..+.+|++++.++-..|+....+. .... +....|+++||.|.|....  -=+.
T Consensus       265 a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~~~-~q~~-p~~~~lelrnvrfay~~~~--Fhvg  340 (546)
T COG4615         265 AATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFPR-PQAF-PDWKTLELRNVRFAYQDNA--FHVG  340 (546)
T ss_pred             HHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccCCC-CCcC-CcccceeeeeeeeccCccc--ceec
Confidence            3345555556678899999999999999999999998766544332221 1111 1234699999999997542  4578


Q ss_pred             eeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcC
Q 020527          100 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYG  179 (325)
Q Consensus       100 ~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~  179 (325)
                      .||++|++||++-|+|.||||||||++++.|+++|++|+|++||+++..-+++++|+-++-||-|.++|+.++      +
T Consensus       341 PiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~  414 (546)
T COG4615         341 PINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------G  414 (546)
T ss_pred             ceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------C
Confidence            9999999999999999999999999999999999999999999999998888999999999999999996543      2


Q ss_pred             CCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHH
Q 020527          180 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV  259 (325)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~  259 (325)
                      .......+.+...+++..+.....-.. +   ....-.||.|||+|+++--|++-+.+|+++||=-+--||.-++.+...
T Consensus       415 ~e~~as~q~i~~~LqrLel~~ktsl~d-~---~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~  490 (546)
T COG4615         415 PEGKASPQLIEKWLQRLELAHKTSLND-G---RFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQV  490 (546)
T ss_pred             CccCCChHHHHHHHHHHHHhhhhcccC-C---cccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHH
Confidence            112244556666666655544322111 1   111235999999999999999999999999999999999999999887


Q ss_pred             HHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEc
Q 020527          260 LHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG  301 (325)
Q Consensus       260 l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g  301 (325)
                      +.-+-++  .|+||+.||||-.-...|||++.|++|++++..
T Consensus       491 lLp~LK~--qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~t  530 (546)
T COG4615         491 LLPLLKE--QGKTIFAISHDDHYFIHADRLLEMRNGQLSELT  530 (546)
T ss_pred             HhHHHHH--hCCeEEEEecCchhhhhHHHHHHHhcCceeecc
Confidence            6555443  699999999998888899999999999998854

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=100.00  E-value=8.7e-35  Score=287.55  Aligned_cols=200  Identities=29%  Similarity=0.441  Sum_probs=163.3

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .++++|++++|++.  +.+++++||.|.+|+.+||+||||+|||||||+|+|...|.+|+|.+.-.           -++
T Consensus       321 vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-----------v~i  387 (530)
T COG0488         321 VLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-----------VKI  387 (530)
T ss_pred             eEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-----------eEE
Confidence            59999999999753  47999999999999999999999999999999999999999999987531           259


Q ss_pred             EEEccCCc-Cc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 020527          159 GFVGQEPQ-LL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP  236 (325)
Q Consensus       159 ~~v~Q~~~-l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p  236 (325)
                      ||++|+.. ++ ..|+.|++.-..+ ......+...+..+++..-....+        ...||||||-|+.||+.++.+|
T Consensus       388 gyf~Q~~~~l~~~~t~~d~l~~~~~-~~~e~~~r~~L~~f~F~~~~~~~~--------v~~LSGGEk~Rl~La~ll~~~p  458 (530)
T COG0488         388 GYFDQHRDELDPDKTVLEELSEGFP-DGDEQEVRAYLGRFGFTGEDQEKP--------VGVLSGGEKARLLLAKLLLQPP  458 (530)
T ss_pred             EEEEehhhhcCccCcHHHHHHhhCc-cccHHHHHHHHHHcCCChHHHhCc--------hhhcCHhHHHHHHHHHHhccCC
Confidence            99999983 44 4699999975422 222445555665555433222222        2569999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEE-cChHHHh
Q 020527          237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEV-GNHAELL  307 (325)
Q Consensus       237 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~-g~~~~l~  307 (325)
                      .+|||||||+.||..+...+.+.|..+     .| |||+||||..++.. |++++.+++ ++... |+.++..
T Consensus       459 NvLiLDEPTNhLDi~s~~aLe~aL~~f-----~G-tvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~  524 (530)
T COG0488         459 NLLLLDEPTNHLDIESLEALEEALLDF-----EG-TVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYL  524 (530)
T ss_pred             CEEEEcCCCccCCHHHHHHHHHHHHhC-----CC-eEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHH
Confidence            999999999999999999999999988     24 99999999999976 999999998 66555 6665543

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=100.00  E-value=4.9e-35  Score=262.67  Aligned_cols=192  Identities=26%  Similarity=0.351  Sum_probs=126.6

Q ss_pred             CCceeeeeEEeeCCcEEEEEcCCCChHHHHH-HHHHcCCCCCCCeEEECC-------EeCCCC---CHHHHh-cceEEEc
Q 020527           95 VPILNHVCLTIEANEVVAIVGLSGSGKSTFV-NLLLRLYEPSDGQIYIDG-------FPLTDL---DIRWLR-EKIGFVG  162 (325)
Q Consensus        95 ~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl-~~l~gl~~~~~G~I~i~g-------~~i~~~---~~~~~r-~~i~~v~  162 (325)
                      ..+|+++||+|++||+++|+||||||||||+ ..+.     .+|++.+..       ..+...   .....+ ...++..
T Consensus         8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (226)
T cd03270           8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAI   82 (226)
T ss_pred             hhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEEe
Confidence            4699999999999999999999999999996 4443     134432211       000000   001111 2244555


Q ss_pred             cCCcC-c-c-ccHH---HHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCc-ccccCCCCCChHHHHHHHHHHHHcCC
Q 020527          163 QEPQL-L-Q-MDIK---SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGY-ETLVDDDLLSGGQKQRIAIARAILRD  235 (325)
Q Consensus       163 Q~~~l-~-~-~tv~---enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~LSgGq~QRv~iAral~~~  235 (325)
                      |++.. + + .++.   +...+.... ......   .+.   .+.++.+.... .......+||||||||++|||||+.+
T Consensus        83 ~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~---~~~---~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~  155 (226)
T cd03270          83 DQKTTSRNPRSTVGTVTEIYDYLRLL-FARVGI---RER---LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSG  155 (226)
T ss_pred             cCCCCCCCCCccHHHHHHHHHHHHHH-hhhhhH---HHH---HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhC
Confidence            54432 1 1 2332   221110000 000000   011   12344443322 12233468999999999999999999


Q ss_pred             C--CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEE------eCCEEEEEc
Q 020527          236 P--AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI------DDGRIIEVG  301 (325)
Q Consensus       236 p--~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l------~~G~i~~~g  301 (325)
                      |  ++|||||||++||+.++..+.+.++++++   .|.|+|++|||++.+..||++++|      ++|+|+++|
T Consensus       156 p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~---~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g  226 (226)
T cd03270         156 LTGVLYVLDEPSIGLHPRDNDRLIETLKRLRD---LGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG  226 (226)
T ss_pred             CCCCEEEEeCCccCCCHHHHHHHHHHHHHHHh---CCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence            8  59999999999999999999999999864   478999999999988779999999      999999875

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.7e-35  Score=246.79  Aligned_cols=205  Identities=29%  Similarity=0.436  Sum_probs=153.6

Q ss_pred             cEEEEEEEEECCC----CCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCE----eCCCCC
Q 020527           79 HVQFVNISFHYPS----RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF----PLTDLD  150 (325)
Q Consensus        79 ~i~~~~v~~~y~~----~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~----~i~~~~  150 (325)
                      .+.++|++|+|.-    ...-++++++||+++.||++++-||||||||||||+|.|-|.|++|+|++.-.    |+....
T Consensus         4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~   83 (235)
T COG4778           4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE   83 (235)
T ss_pred             eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence            4789999998831    11247999999999999999999999999999999999999999999998532    222222


Q ss_pred             HH----HHhcceEEEccCCcCc-cccHHHHHhc-----CCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCCh
Q 020527          151 IR----WLREKIGFVGQEPQLL-QMDIKSNIMY-----GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSG  220 (325)
Q Consensus       151 ~~----~~r~~i~~v~Q~~~l~-~~tv~enl~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSg  220 (325)
                      +.    -.|+.||||+|.-... ..+..|.++-     |.+......+....+.+..+.+.+-.+        .+..+||
T Consensus        84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~L--------aPaTFSG  155 (235)
T COG4778          84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSL--------APATFSG  155 (235)
T ss_pred             hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcC--------CCcccCC
Confidence            22    2356799999975443 4455555543     222111112222233333333333222        2467999


Q ss_pred             HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeC
Q 020527          221 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD  294 (325)
Q Consensus       221 Gq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~  294 (325)
                      ||+|||.|||.++.+-+||||||||++||..++..+.+++.+.+.   +|.++|=|-||-+.-+. |||++.|..
T Consensus       156 GEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka---~GaAlvGIFHDeevre~vadR~~~~~~  227 (235)
T COG4778         156 GEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKA---RGAALVGIFHDEEVREAVADRLLDVSA  227 (235)
T ss_pred             chheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHh---cCceEEEeeccHHHHHHHhhheeeccc
Confidence            999999999999999999999999999999999999999998864   58999999999887765 999988753

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=100.00  E-value=4.3e-35  Score=242.19  Aligned_cols=136  Identities=43%  Similarity=0.679  Sum_probs=113.4

Q ss_pred             eeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCcc-ccHHHHH
Q 020527           98 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNI  176 (325)
Q Consensus        98 L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~tv~enl  176 (325)
                      |+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+....++.++|++|++.+++ .|++||.
T Consensus         1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~   80 (137)
T PF00005_consen    1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENE   80 (137)
T ss_dssp             EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHH
T ss_pred             CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            789999999999999999999999999999999999999999999999988666778899999999988884 6799991


Q ss_pred             hcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCC
Q 020527          177 MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATS  246 (325)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts  246 (325)
                              ..+++.++++..++.++.....     ......||+|||||++|||||+.+|+++|||||||
T Consensus        81 --------~~~~~~~~l~~l~~~~~~~~~~-----~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~  137 (137)
T PF00005_consen   81 --------SDERIEEVLKKLGLEDLLDRKI-----GQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN  137 (137)
T ss_dssp             --------HHHHHHHHHHHTTHGGGTGSBG-----TSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred             --------cccccccccccccccccccccc-----ccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence                    1344555666665544322211     11125799999999999999999999999999997

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=100.00  E-value=7e-36  Score=250.17  Aligned_cols=212  Identities=22%  Similarity=0.365  Sum_probs=173.8

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .++++||...-       -|-.+|.++..||++-+|||||||||||+-.++|+.+ .+|+|.++|.++..++..++.++-
T Consensus         3 l~qln~v~~~t-------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~-~sGsi~~~G~~l~~~~~~eLArhR   74 (248)
T COG4138           3 LMQLNDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEAWSATELARHR   74 (248)
T ss_pred             eeeeccccccc-------cccccccccccceEEEEECCCCccHHHHHHHHhCCCC-CCceEEECCcchhHHhHhHHHHHH
Confidence            36788887542       4778899999999999999999999999999999985 799999999999998888888889


Q ss_pred             EEEccCCc-CccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC---
Q 020527          159 GFVGQEPQ-LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR---  234 (325)
Q Consensus       159 ~~v~Q~~~-l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~---  234 (325)
                      +|+.|+.. .|.+.|+.++.+..+.......+.+.....++.+.+-         +..++|||||.|||-+|-..++   
T Consensus        75 AYLsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~---------Rs~~qLSGGEWQRVRLAav~LQv~P  145 (248)
T COG4138          75 AYLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLG---------RSTNQLSGGEWQRVRLAAVVLQITP  145 (248)
T ss_pred             HHHhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccchhh---------hhhhhcCcccceeeEEeEEEEEecC
Confidence            99998764 5789999999886443222223333333333333222         2236799999999999988875   


Q ss_pred             --C--CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchH-HHhcCEEEEEeCCEEEEEcChHHHhhc
Q 020527          235 --D--PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST-IKAVDRIVVIDDGRIIEVGNHAELLHK  309 (325)
Q Consensus       235 --~--p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~-~~~~d~v~~l~~G~i~~~g~~~~l~~~  309 (325)
                        |  .++||+|||.++||...+..+-.++.++++   .|.+|||++||++. ++.+|+++.++.|++...|..+++++.
T Consensus       146 d~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~---~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~  222 (248)
T COG4138         146 DANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQ---QGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP  222 (248)
T ss_pred             CCCccceeEEecCCCcchhHHHHHHHHHHHHHHHh---CCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence              3  469999999999999999999999999975   59999999999985 577999999999999999999999876


Q ss_pred             C
Q 020527          310 G  310 (325)
Q Consensus       310 ~  310 (325)
                      +
T Consensus       223 ~  223 (248)
T COG4138         223 P  223 (248)
T ss_pred             H
Confidence            4

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=100.00  E-value=2.2e-34  Score=253.16  Aligned_cols=164  Identities=24%  Similarity=0.333  Sum_probs=127.7

Q ss_pred             eeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCC---------CeEEECCEeCCCCCHHHHhcceEEEccCCcCcc
Q 020527           99 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD---------GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ  169 (325)
Q Consensus        99 ~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~---------G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~  169 (325)
                      +++++++++| +++|+||||||||||+++|+|+.+|..         |++.++|.++..   ...+++|+|+||++..+ 
T Consensus        14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~vfq~~~~~-   88 (197)
T cd03278          14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK---PANFAEVTLTFDNSDGR-   88 (197)
T ss_pred             CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC---CCceEEEEEEEEcCCCc-
Confidence            6789999999 999999999999999999999987653         467777776543   12357899999999776 


Q ss_pred             ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc----CCCCEEEEeCCC
Q 020527          170 MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL----RDPAILLLDEAT  245 (325)
Q Consensus       170 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~----~~p~llllDEPt  245 (325)
                              |+..   ..+++.++++.          . +. .......||||||||++|||+++    .+|+++||||||
T Consensus        89 --------~~~~---~~~~~~~~l~~----------~-~~-~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~  145 (197)
T cd03278          89 --------YSII---SQGDVSEIIEA----------P-GK-KVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVD  145 (197)
T ss_pred             --------eeEE---ehhhHHHHHhC----------C-Cc-cccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCc
Confidence                    2210   11223333332          1 11 11223579999999999999996    567999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeC
Q 020527          246 SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD  294 (325)
Q Consensus       246 s~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~  294 (325)
                      ++||+.....+.+.++++++    +.|||++||+++.+..||+++.+..
T Consensus       146 ~~LD~~~~~~l~~~l~~~~~----~~tiIiitH~~~~~~~~d~v~~~~~  190 (197)
T cd03278         146 AALDDANVERFARLLKEFSK----ETQFIVITHRKGTMEAADRLYGVTM  190 (197)
T ss_pred             ccCCHHHHHHHHHHHHHhcc----CCEEEEEECCHHHHhhcceEEEEEe
Confidence            99999999999999999853    5799999999998878999999864

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=100.00  E-value=9.6e-34  Score=258.29  Aligned_cols=195  Identities=27%  Similarity=0.401  Sum_probs=139.4

Q ss_pred             CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHH-----c-CC----CCCCC-----------eEEECCEeCCCCC---H
Q 020527           96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-----R-LY----EPSDG-----------QIYIDGFPLTDLD---I  151 (325)
Q Consensus        96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~-----g-l~----~~~~G-----------~I~i~g~~i~~~~---~  151 (325)
                      .-|+|+|++|+.|..++|+|+||||||||++.+.     . +.    .|..+           -|.+|..++..-+   +
T Consensus         9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~   88 (261)
T cd03271           9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP   88 (261)
T ss_pred             hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence            3699999999999999999999999999998652     1 11    12211           3666666664321   1


Q ss_pred             -------HHHhc----------------ceEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCC
Q 020527          152 -------RWLRE----------------KIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPC  207 (325)
Q Consensus       152 -------~~~r~----------------~i~~v~Q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (325)
                             ..+|+                .+.|..++...+ .+|+.|++.|.... ....+..         ++++.+..
T Consensus        89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~-~~~~~~~---------~~L~~vgL  158 (261)
T cd03271          89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENI-PKIARKL---------QTLCDVGL  158 (261)
T ss_pred             HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhh-hhHHHHH---------HHHHHcCC
Confidence                   11111                144555444333 67888887653211 1112222         23344333


Q ss_pred             Ccc-cccCCCCCChHHHHHHHHHHHHcCC---CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHH
Q 020527          208 GYE-TLVDDDLLSGGQKQRIAIARAILRD---PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI  283 (325)
Q Consensus       208 ~~~-~~~~~~~LSgGq~QRv~iAral~~~---p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~  283 (325)
                      ++. ......+|||||+||++|||+|+.+   |+++||||||++||+.....+.+.|+++.+   .|.|+|++||+++.+
T Consensus       159 ~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~---~g~tvIiitH~~~~i  235 (261)
T cd03271         159 GYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVD---KGNTVVVIEHNLDVI  235 (261)
T ss_pred             chhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHH
Confidence            321 1222367999999999999999996   799999999999999999999999999874   478999999999998


Q ss_pred             HhcCEEEEE------eCCEEEEEcCh
Q 020527          284 KAVDRIVVI------DDGRIIEVGNH  303 (325)
Q Consensus       284 ~~~d~v~~l------~~G~i~~~g~~  303 (325)
                      ..||++++|      ++|+|++.|+|
T Consensus       236 ~~aD~ii~Lgp~~g~~~G~iv~~Gt~  261 (261)
T cd03271         236 KCADWIIDLGPEGGDGGGQVVASGTP  261 (261)
T ss_pred             HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence            889999999      89999999875

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.5e-32  Score=266.40  Aligned_cols=216  Identities=26%  Similarity=0.439  Sum_probs=171.5

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHH-HHhcce
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR-WLREKI  158 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~-~~r~~i  158 (325)
                      ++++|++..       ..++|+||++++||++||.|-=|||+|-|+++|.|..++.+|+|.++|+++.-.++. ..+..|
T Consensus       264 l~v~~l~~~-------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi  336 (500)
T COG1129         264 LEVRNLSGG-------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGI  336 (500)
T ss_pred             EEEecCCCC-------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCC
Confidence            566666432       258999999999999999999999999999999999999999999999998766654 678899


Q ss_pred             EEEccCCc---Cc-cccHHHHHhcCCCCCCCHH-HHHHHHHHcCHHHHHHhCCCCcccc-cCCCCCChHHHHHHHHHHHH
Q 020527          159 GFVGQEPQ---LL-QMDIKSNIMYGCPKDVKNE-DIEWAAKQAYVHEFILSLPCGYETL-VDDDLLSGGQKQRIAIARAI  232 (325)
Q Consensus       159 ~~v~Q~~~---l~-~~tv~enl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~LSgGq~QRv~iAral  232 (325)
                      +|||.|..   ++ ..+|.+|+.+......... -+....++...+++..++....... .....||||.+|||.|||.|
T Consensus       337 ~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL  416 (500)
T COG1129         337 AYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWL  416 (500)
T ss_pred             EeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHH
Confidence            99999863   55 7899999977521110000 1223333334445555544322111 12357999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHH
Q 020527          233 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAE  305 (325)
Q Consensus       233 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~  305 (325)
                      +.+|++|||||||.|.|.-++.+|.++++++++   +|++||++|-++.++. .||||+||++|+++..-+.++
T Consensus       417 ~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~---~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~  487 (500)
T COG1129         417 ATDPKVLILDEPTRGIDVGAKAEIYRLIRELAA---EGKAILMISSELPELLGLSDRILVMREGRIVGELDREE  487 (500)
T ss_pred             hcCCCEEEECCCCcCcccchHHHHHHHHHHHHH---CCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecccc
Confidence            999999999999999999999999999999986   4999999999999885 699999999999988666555

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.98  E-value=5.3e-32  Score=240.86  Aligned_cols=191  Identities=20%  Similarity=0.198  Sum_probs=135.0

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEee-CCcEEEEEcCCCChHHHHHHHHHc-CCCCCCCeEEECCEeCCCCCHHHHhc
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIE-ANEVVAIVGLSGSGKSTFVNLLLR-LYEPSDGQIYIDGFPLTDLDIRWLRE  156 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~-~Ge~~~iiG~nGsGKSTLl~~l~g-l~~~~~G~I~i~g~~i~~~~~~~~r~  156 (325)
                      .|+++|+. +|.+.      ++++|+.. +|++++|+||||||||||+++|++ ++.+..+....+ .....+.....+.
T Consensus         5 ~i~l~nf~-~y~~~------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~   76 (213)
T cd03279           5 KLELKNFG-PFREE------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTA   76 (213)
T ss_pred             EEEEECCc-CcCCc------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccE
Confidence            48899997 77532      56677654 589999999999999999999995 555555555443 1111122223356


Q ss_pred             ceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHH--HHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 020527          157 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEW--AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR  234 (325)
Q Consensus       157 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~  234 (325)
                      .|+++||++.... ++..   +.   ....+....  .+...++.+++++.+         ..|||||+||++||||++.
T Consensus        77 ~v~~~f~~~~~~~-~~~r---~~---gl~~~~~~~~~~l~~g~l~~~l~~~~---------~~lS~G~~~r~~la~al~~  140 (213)
T cd03279          77 EVSFTFQLGGKKY-RVER---SR---GLDYDQFTRIVLLPQGEFDRFLARPV---------STLSGGETFLASLSLALAL  140 (213)
T ss_pred             EEEEEEEECCeEE-EEEE---ec---CCCHHHHHHhhhhhhcchHHHhcCCc---------cccCHHHHHHHHHHHHHHh
Confidence            7999999874321 1111   11   122222222  123333444444333         5799999999999999984


Q ss_pred             ----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCE
Q 020527          235 ----------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR  296 (325)
Q Consensus       235 ----------~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~  296 (325)
                                +|+++||||||++||+.+...+.+.+.++++   ++.|+|+|||+++.+.. ||+++++++|.
T Consensus       141 ~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~---~~~tii~itH~~~~~~~~~~~i~~~~~~~  210 (213)
T cd03279         141 SEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRT---ENRMVGVISHVEELKERIPQRLEVIKTPG  210 (213)
T ss_pred             HHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEECchHHHHhhCcEEEEEecCC
Confidence                      6789999999999999999999999999864   37899999999998865 89999999884

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]

Probab=99.98  E-value=2.2e-30  Score=250.13  Aligned_cols=267  Identities=24%  Similarity=0.337  Sum_probs=205.8

Q ss_pred             CCcCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCC-------------cc--------c
Q 020527           13 GQVSPEQLTKYV----LYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSN-------------QF--------L   67 (325)
Q Consensus        13 g~it~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-------------~~--------~   67 (325)
                      +.+|..++...+    .++..+++++..++....++....+-..|+.++.+.-.+.             ..        .
T Consensus       342 ~~~s~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~  421 (659)
T KOG0060|consen  342 DDLSPAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLP  421 (659)
T ss_pred             CCcCHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCC
Confidence            456666654333    3345556667777777777777777778887765431110             00        0


Q ss_pred             cccccccCCcccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCC
Q 020527           68 SEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT  147 (325)
Q Consensus        68 ~~~~~~~~~~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~  147 (325)
                      +...+..+....|++++|+..-|.+ ...+++|+||+|+.|+.+.|.||||||||+|+|.++||.+..+|.+..-.+.- 
T Consensus       422 ~G~~~~~~~Dn~i~~e~v~l~tPt~-g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~-  499 (659)
T KOG0060|consen  422 PGSGKAEPADNAIEFEEVSLSTPTN-GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG-  499 (659)
T ss_pred             CCCcccccccceEEeeeeeecCCCC-CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC-
Confidence            1001111122359999999998864 34688999999999999999999999999999999999999999997543221 


Q ss_pred             CCCHHHHhcceEEEccCCcCccccHHHHHhcCCC------CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC---CCCC
Q 020527          148 DLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP------KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD---DDLL  218 (325)
Q Consensus       148 ~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~L  218 (325)
                             -+.+-|+||.|+.--+|.+|.+.|+..      ....++++.+.++.+++.+++++.. |+++...   ...|
T Consensus       500 -------~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~g-gld~~~~~dW~dvL  571 (659)
T KOG0060|consen  500 -------PKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREG-GLDQQVDWDWMDVL  571 (659)
T ss_pred             -------CCceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhC-CCCchhhccHHhhc
Confidence                   145899999999878999999988731      2345778889999999999998875 6664443   2579


Q ss_pred             ChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCC
Q 020527          219 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDG  295 (325)
Q Consensus       219 SgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G  295 (325)
                      |+||+||+++||-++++|++-+|||.||++|.+.+..+.+.+++.      |.|.|-|+|+.+..+.-|.++.|+.+
T Consensus       572 S~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~------giT~iSVgHRkSL~kfHd~~L~~~g~  642 (659)
T KOG0060|consen  572 SPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM------GITFISVGHRKSLWKFHDYVLRMDGR  642 (659)
T ss_pred             CHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc------CCeEEEeccHHHHHhhhhEEEEecCC
Confidence            999999999999999999999999999999999999888888765      89999999999999999999999753

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.97  E-value=5.6e-32  Score=245.02  Aligned_cols=195  Identities=21%  Similarity=0.289  Sum_probs=129.8

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHH----------------cCCCCCCC-----
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL----------------RLYEPSDG-----  137 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~----------------gl~~~~~G-----  137 (325)
                      .|+++|. ++|++.   .++++++     |++++|+||||||||||+++|+                +++.+.+|     
T Consensus         3 ~i~~~nf-ksy~~~---~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~   73 (243)
T cd03272           3 QVIIQGF-KSYKDQ---TVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMS   73 (243)
T ss_pred             EEEEeCc-cCcccC---cccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCce
Confidence            3677776 467543   5788876     7899999999999999999998                44556666     


Q ss_pred             ---eEEECCEeCC-CC--CHHHHhcceEEEccCCcCcc--ccHHHHHhc----CCCCCCCHHHHHHHHHHcCHHHHHHhC
Q 020527          138 ---QIYIDGFPLT-DL--DIRWLREKIGFVGQEPQLLQ--MDIKSNIMY----GCPKDVKNEDIEWAAKQAYVHEFILSL  205 (325)
Q Consensus       138 ---~I~i~g~~i~-~~--~~~~~r~~i~~v~Q~~~l~~--~tv~enl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (325)
                         +|.+++.+-. ..  .....++.+++++|++.++.  .|..|...+    +....... .   ....-.+.++... 
T Consensus        74 ~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~-~---~~~qg~i~~l~~l-  148 (243)
T cd03272          74 AYVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPY-Y---IVPQGKINSLTNM-  148 (243)
T ss_pred             EEEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCc-E---EEEcCchHHhhhc-
Confidence               6666553211 00  11234667899998887764  355554322    11110000 0   0000001111110 


Q ss_pred             CCCcccccCCCCCChHHHHHHHHHHHHc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCch
Q 020527          206 PCGYETLVDDDLLSGGQKQRIAIARAIL----RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS  281 (325)
Q Consensus       206 ~~~~~~~~~~~~LSgGq~QRv~iAral~----~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~  281 (325)
                      .  .........||||||||++||||++    .+|+++|+||||++||+.+++.+.+.++++.+    +.++|++||+.+
T Consensus       149 ~--~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~----~~~ii~~~h~~~  222 (243)
T cd03272         149 K--QDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD----GAQFITTTFRPE  222 (243)
T ss_pred             c--ccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC----CCEEEEEecCHH
Confidence            0  0011123579999999999999996    36899999999999999999999999998842    678888899877


Q ss_pred             HHHhcCEEEEEe
Q 020527          282 TIKAVDRIVVID  293 (325)
Q Consensus       282 ~~~~~d~v~~l~  293 (325)
                      ....||++++|.
T Consensus       223 ~~~~~d~i~~l~  234 (243)
T cd03272         223 LLEVADKFYGVK  234 (243)
T ss_pred             HHhhCCEEEEEE
Confidence            666799999985

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.97  E-value=3.9e-31  Score=240.97  Aligned_cols=199  Identities=15%  Similarity=0.233  Sum_probs=137.1

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCC-CCeEEECCE-eCCCCC-H-HHH
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYIDGF-PLTDLD-I-RWL  154 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~-~G~I~i~g~-~i~~~~-~-~~~  154 (325)
                      .|+++|. ++|...   .++.    .+. ..+++|+||||||||||+++|++++.+. .|++.+.+. ++-... . ...
T Consensus         5 ~~~~~~f-~~~~~~---~~~~----~~~-~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~   75 (251)
T cd03273           5 EIILDGF-KSYATR---TVIS----GFD-PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGIT   75 (251)
T ss_pred             EEEEeCc-cccCcC---Eeec----cCC-CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCc
Confidence            3667776 556421   1111    233 4599999999999999999999999886 468888776 432111 1 122


Q ss_pred             hcceEEEccCCc---------Cc-cccHHHHHhcCCCC-------CCCHHHHHHHHHHcCHH--------------HHHH
Q 020527          155 REKIGFVGQEPQ---------LL-QMDIKSNIMYGCPK-------DVKNEDIEWAAKQAYVH--------------EFIL  203 (325)
Q Consensus       155 r~~i~~v~Q~~~---------l~-~~tv~enl~~~~~~-------~~~~~~~~~~~~~~~~~--------------~~~~  203 (325)
                      +.+|++++|++.         +. ..||.+|+..+...       ....+++...++.+++.              ++++
T Consensus        76 ~~~v~~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~  155 (251)
T cd03273          76 KASVTIVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLN  155 (251)
T ss_pred             EEEEEEEEEcCCcccCcccccCCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHH
Confidence            457999999852         22 46888887654211       11223344444444432              0000


Q ss_pred             hCCCCcccccCCCCCChHHHHHHHHHHHHc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 020527          204 SLPCGYETLVDDDLLSGGQKQRIAIARAIL----RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHR  279 (325)
Q Consensus       204 ~~~~~~~~~~~~~~LSgGq~QRv~iAral~----~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~  279 (325)
                      .   .........+||+|||||++|||||+    .+|+++|+||||++||+.++..+.+.|+++.    +|.|+|++||+
T Consensus       156 ~---~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~----~g~~ii~iSH~  228 (251)
T cd03273         156 M---GGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF----KGSQFIVVSLK  228 (251)
T ss_pred             h---HHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc----CCCEEEEEECC
Confidence            0   00011223679999999999999997    5889999999999999999999999999884    37799999999


Q ss_pred             chHHHhcCEEEEEe
Q 020527          280 LSTIKAVDRIVVID  293 (325)
Q Consensus       280 ~~~~~~~d~v~~l~  293 (325)
                      .+..+.||+++-+.
T Consensus       229 ~~~~~~~d~v~~~~  242 (251)
T cd03273         229 EGMFNNANVLFRTR  242 (251)
T ss_pred             HHHHHhCCEEEEEE
Confidence            77778899998775

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.97  E-value=1.1e-30  Score=231.02  Aligned_cols=165  Identities=22%  Similarity=0.311  Sum_probs=127.7

Q ss_pred             eEEeeCCcEEEEEcCCCChHHHHHHHHH----cCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCC-----cCc-ccc
Q 020527          102 CLTIEANEVVAIVGLSGSGKSTFVNLLL----RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEP-----QLL-QMD  171 (325)
Q Consensus       102 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~----gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~-----~l~-~~t  171 (325)
                      ++++.+| +++|+||||||||||+++|.    |..+|.+|.+..+...+..   ...+..|+++||++     .+. ..|
T Consensus        17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~---~~~~~~v~~~f~~~~~~~~~v~r~~~   92 (204)
T cd03240          17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE---GEVRAQVKLAFENANGKKYTITRSLA   92 (204)
T ss_pred             EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC---CCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence            4566777 99999999999999999995    9989888877622222221   12356799999998     233 359


Q ss_pred             HHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH------HHHHHHHcCCCCEEEEeCCC
Q 020527          172 IKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR------IAIARAILRDPAILLLDEAT  245 (325)
Q Consensus       172 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR------v~iAral~~~p~llllDEPt  245 (325)
                      +++|+.+..     .+++.         +.+++.+         ..||+||+||      ++||||++.+|+++|+||||
T Consensus        93 ~~~~~~~~~-----~~~~~---------~~~~~~~---------~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~  149 (204)
T cd03240          93 ILENVIFCH-----QGESN---------WPLLDMR---------GRCSGGEKVLASLIIRLALAETFGSNCGILALDEPT  149 (204)
T ss_pred             Hhhceeeec-----hHHHH---------HHHhcCc---------cccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCc
Confidence            999997741     12211         2223322         5699999996      78999999999999999999


Q ss_pred             CCCCHHHHH-HHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCC
Q 020527          246 SALDSESEH-YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDG  295 (325)
Q Consensus       246 s~LD~~~~~-~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G  295 (325)
                      ++||+.... .+.+.+.+++++  .+.|+|++||+++.+..||+++.|++.
T Consensus       150 ~~LD~~~~~~~l~~~l~~~~~~--~~~~iiiitH~~~~~~~~d~i~~l~~~  198 (204)
T cd03240         150 TNLDEENIEESLAEIIEERKSQ--KNFQLIVITHDEELVDAADHIYRVEKD  198 (204)
T ss_pred             cccCHHHHHHHHHHHHHHHHhc--cCCEEEEEEecHHHHhhCCEEEEEeeC
Confidence            999999999 999999998642  267999999999988789999999653

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.97  E-value=1e-30  Score=250.77  Aligned_cols=199  Identities=26%  Similarity=0.396  Sum_probs=158.4

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .+.++||+|.|.++.  .++++++|-|..++.+++|||||||||||||++.|.+.|..|.|.-.-.           .++
T Consensus       389 vi~~~nv~F~y~~~~--~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-----------~~~  455 (614)
T KOG0927|consen  389 VIMVQNVSFGYSDNP--MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-----------NKL  455 (614)
T ss_pred             eEEEeccccCCCCcc--hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-----------ccc
Confidence            489999999998753  7999999999999999999999999999999999999999998864321           234


Q ss_pred             EEEccCCc--C-ccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 020527          159 GFVGQEPQ--L-LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD  235 (325)
Q Consensus       159 ~~v~Q~~~--l-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~  235 (325)
                      ++..|+..  + +..+..|+++-..+.....+.+...+.++++....+..|        ..+||+|||.||++||.++.+
T Consensus       456 ~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p--------~~~LS~Gqr~rVlFa~l~~kq  527 (614)
T KOG0927|consen  456 PRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVP--------MSQLSDGQRRRVLFARLAVKQ  527 (614)
T ss_pred             hhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccc--------hhhcccccchhHHHHHHHhcC
Confidence            45556542  2 467888887532222234555666666666654333333        267999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEE-EcChH
Q 020527          236 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIE-VGNHA  304 (325)
Q Consensus       236 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~-~g~~~  304 (325)
                      |.+|||||||++||..+...+.+.|.++     .| +||+||||..++.. ++++++..+|.+.. .|+..
T Consensus       528 P~lLlLDEPtnhLDi~tid~laeaiNe~-----~G-gvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~  592 (614)
T KOG0927|consen  528 PHLLLLDEPTNHLDIETIDALAEAINEF-----PG-GVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIE  592 (614)
T ss_pred             CcEEEecCCCcCCCchhHHHHHHHHhcc-----CC-ceeeeechhhHHHHHHHHhHhhccCceeecCccHH
Confidence            9999999999999999999999999887     24 89999999999975 99999999988754 45443

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.96  E-value=4.9e-31  Score=234.44  Aligned_cols=179  Identities=22%  Similarity=0.242  Sum_probs=127.2

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .|+++|.. +|++.   .+++++++     ++++|+||||||||||+++|.          +++|.+..    ...++++
T Consensus         5 ~l~l~nfk-~~~~~---~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~----~~~~~~i   61 (212)
T cd03274           5 KLVLENFK-SYAGE---QVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRAS----KMRQKKL   61 (212)
T ss_pred             EEEEECcc-cCCCC---eeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHH----HhhhhhH
Confidence            47888885 78643   58999987     899999999999999999997          33454321    1113579


Q ss_pred             EEEccCCcCc-cccHHHHHhcCCCCCCCHHHH----------------HHHHHHcCHHHHHHhCCCCcccccCCCCCChH
Q 020527          159 GFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDI----------------EWAAKQAYVHEFILSLPCGYETLVDDDLLSGG  221 (325)
Q Consensus       159 ~~v~Q~~~l~-~~tv~enl~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgG  221 (325)
                      ++++|+..++ ..|+.+++.+..... .....                .+..+..++       +...++  ....||+|
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L-------~~~~~~--~~~~lS~G  131 (212)
T cd03274          62 SDLIHNSAGHPNLDSCSVEVHFQEII-DKPLLKSKGIDLDHNRFLILQGEVEQIAQM-------PKKSWK--NISNLSGG  131 (212)
T ss_pred             HHHhcCCCCCCCCceEEEEEEEEeCC-CHHHHHHCCcCCCCCceEEcCCcEEEeecc-------cccccc--chhhcCHH
Confidence            9999988766 457777664421100 00000                001111111       111111  12469999


Q ss_pred             HHHHHHHHHHHcC----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeC
Q 020527          222 QKQRIAIARAILR----DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD  294 (325)
Q Consensus       222 q~QRv~iAral~~----~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~  294 (325)
                      ||||++||||++.    +|+++++||||++||+.++..+.+.++++++    +.|+|++||+.+....||++++|..
T Consensus       132 ~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~----~~~~iivs~~~~~~~~~d~v~~~~~  204 (212)
T cd03274         132 EKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK----NAQFIVISLRNNMFELADRLVGIYK  204 (212)
T ss_pred             HHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC----CCEEEEEECcHHHHHhCCEEEEEEe
Confidence            9999999999963    5899999999999999999999999999853    5689999999766677999999964

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.96  E-value=1e-29  Score=218.94  Aligned_cols=228  Identities=23%  Similarity=0.355  Sum_probs=176.3

Q ss_pred             cEEEEEEEEECCCC-CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC----CCCeEEECCEeCCCCCHHH
Q 020527           79 HVQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP----SDGQIYIDGFPLTDLDIRW  153 (325)
Q Consensus        79 ~i~~~~v~~~y~~~-~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~----~~G~I~i~g~~i~~~~~~~  153 (325)
                      -+.++|++..+... +..++++++|+++.+||+-++||+||||||-..|.|+|..+-    +.-+..+++.++-.+++++
T Consensus         3 LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~   82 (330)
T COG4170           3 LLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRE   82 (330)
T ss_pred             cccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHH
Confidence            46778888777432 235799999999999999999999999999999999999763    4567788888887787776


Q ss_pred             Hhc----ceEEEccCCcC-c--cccH----HHHHhcCCC-------CCCCHHHHHHHHHHcCHHH---HHHhCCCCcccc
Q 020527          154 LRE----KIGFVGQEPQL-L--QMDI----KSNIMYGCP-------KDVKNEDIEWAAKQAYVHE---FILSLPCGYETL  212 (325)
Q Consensus       154 ~r~----~i~~v~Q~~~l-~--~~tv----~enl~~~~~-------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  212 (325)
                      .|+    .|+++||+|.- +  +.+|    .+||-+...       ....+.+..+.+.++++.+   .+...|      
T Consensus        83 RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP------  156 (330)
T COG4170          83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYP------  156 (330)
T ss_pred             hhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCc------
Confidence            554    58899999953 2  3344    344422110       0111223334455555533   233333      


Q ss_pred             cCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEE
Q 020527          213 VDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVV  291 (325)
Q Consensus       213 ~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~  291 (325)
                         .+|-.||-|+|+||.|++.+|++||.||||+++|+.++.+++++|.++.+.  +|.||++++||+..+.. ||++-|
T Consensus       157 ---~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn--~~TtILL~s~Dl~~is~W~d~i~V  231 (330)
T COG4170         157 ---YELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQN--SNTTILLISHDLQMISQWADKINV  231 (330)
T ss_pred             ---chhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhcc--CCceEEEEcccHHHHHHHhhheEE
Confidence               579999999999999999999999999999999999999999999999764  68999999999999865 999999


Q ss_pred             EeCCEEEEEcChHHHhhc-CHHHHHHH
Q 020527          292 IDDGRIIEVGNHAELLHK-GRLYAKLV  317 (325)
Q Consensus       292 l~~G~i~~~g~~~~l~~~-~~~~~~~~  317 (325)
                      |..|+-++++..+++++. ..-|.+.+
T Consensus       232 lYCGQ~~ESa~~e~l~~~PhHPYTqAL  258 (330)
T COG4170         232 LYCGQTVESAPSEELVTMPHHPYTQAL  258 (330)
T ss_pred             EEecccccccchhHHhcCCCCchHHHH
Confidence            999999999999999875 34465543

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.96  E-value=1.1e-28  Score=267.92  Aligned_cols=213  Identities=21%  Similarity=0.314  Sum_probs=147.0

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHH---------HHHcCCCCCCC----e----EEE
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVN---------LLLRLYEPSDG----Q----IYI  141 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~---------~l~gl~~~~~G----~----I~i  141 (325)
                      .++++|++.        ..|+++||+|++||+++|+|+||||||||++         .+.|..++..+    .    |.+
T Consensus       600 ~L~l~~~~~--------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~i  671 (1809)
T PRK00635        600 TLTLSKATK--------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHI  671 (1809)
T ss_pred             eEEEecccc--------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEe
Confidence            377777751        2799999999999999999999999999999         55564332111    1    234


Q ss_pred             CCEeCCCCC----H------HHHh---------c-----ceEEEccC------------------C--------------
Q 020527          142 DGFPLTDLD----I------RWLR---------E-----KIGFVGQE------------------P--------------  165 (325)
Q Consensus       142 ~g~~i~~~~----~------~~~r---------~-----~i~~v~Q~------------------~--------------  165 (325)
                      |-.++...+    .      ..+|         +     ...|.|+.                  +              
T Consensus       672 dQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy  751 (1809)
T PRK00635        672 TRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRF  751 (1809)
T ss_pred             cCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCccc
Confidence            433332110    0      0122         1     12233432                  0              


Q ss_pred             ------cCc-cccHHHHHhcCCCCC----CCHHHHHHHHHHcCHHHHHHhCCCCcc-cccCCCCCChHHHHHHHHHHHHc
Q 020527          166 ------QLL-QMDIKSNIMYGCPKD----VKNEDIEWAAKQAYVHEFILSLPCGYE-TLVDDDLLSGGQKQRIAIARAIL  233 (325)
Q Consensus       166 ------~l~-~~tv~enl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~LSgGq~QRv~iAral~  233 (325)
                            ..+ ..||.|++.++....    .....   ..+.  + +.++.+..++. ......+|||||+||++|||||+
T Consensus       752 ~~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~---i~~~--l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~  825 (1809)
T PRK00635        752 LPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPS---IHEK--I-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELL  825 (1809)
T ss_pred             CHHHHhhccCCCCHHHHHHcCHHHHHHcccChHH---HHHH--H-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHh
Confidence                  023 357888887752100    00111   1111  1 23444443322 22234679999999999999997


Q ss_pred             ---CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEe------CCEEEEEcChH
Q 020527          234 ---RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVID------DGRIIEVGNHA  304 (325)
Q Consensus       234 ---~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~------~G~i~~~g~~~  304 (325)
                         .+|+++||||||++||+.+.+.+++.|+++++   .|.|||+|||+++.+..||++++|.      +|++++.|+++
T Consensus       826 ~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~---~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpe  902 (1809)
T PRK00635        826 APSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTH---QGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPE  902 (1809)
T ss_pred             hcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHH
Confidence               69999999999999999999999999999974   4889999999999997799999996      79999999999


Q ss_pred             HHhh
Q 020527          305 ELLH  308 (325)
Q Consensus       305 ~l~~  308 (325)
                      ++..
T Consensus       903 el~~  906 (1809)
T PRK00635        903 ELIH  906 (1809)
T ss_pred             HHHh
Confidence            9875

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.96  E-value=2.4e-28  Score=233.27  Aligned_cols=222  Identities=26%  Similarity=0.448  Sum_probs=175.2

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeC-CCCCHHHHh-c
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL-TDLDIRWLR-E  156 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i-~~~~~~~~r-~  156 (325)
                      .++++|++..-...  ...+++|||+|++||++||.|-.|-|-+-|+.+|+|+.+|.+|+|.++|+++ ...++.++| .
T Consensus       257 vL~V~~L~v~~~~~--~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~  334 (501)
T COG3845         257 VLEVEDLSVKDRRG--VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRL  334 (501)
T ss_pred             EEEEeeeEeecCCC--CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhc
Confidence            59999999875432  4689999999999999999999999999999999999999999999999997 566666554 5


Q ss_pred             ceEEEccCCc---C-ccccHHHHHhcCCCCC---CCHHHHHHHHHHcCHHHHHHhCCCCc-ccccCCCCCChHHHHHHHH
Q 020527          157 KIGFVGQEPQ---L-LQMDIKSNIMYGCPKD---VKNEDIEWAAKQAYVHEFILSLPCGY-ETLVDDDLLSGGQKQRIAI  228 (325)
Q Consensus       157 ~i~~v~Q~~~---l-~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~LSgGq~QRv~i  228 (325)
                      .++|||.|.+   + ..+|+.||+.++....   .....+..-.-.....+.++++...- ........||||.+||+-+
T Consensus       335 G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~Il  414 (501)
T COG3845         335 GLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLIL  414 (501)
T ss_pred             CCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhh
Confidence            7999999873   3 4789999997753221   01100111111111233444443221 1112235799999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHH
Q 020527          229 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAE  305 (325)
Q Consensus       229 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~  305 (325)
                      ||-|.++|++||+.+||-|||..+.+.+.+.|.+.++   .|++|+++|-|++++. .||||.||.+|+++...++++
T Consensus       415 aREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~---~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~~  489 (501)
T COG3845         415 ARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRD---AGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEE  489 (501)
T ss_pred             hhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHh---cCCEEEEEehhHHHHHHhhheeeeeeCCceeccccccc
Confidence            9999999999999999999999999999999999875   5999999999999985 599999999999998877765

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.96  E-value=1.1e-28  Score=257.78  Aligned_cols=111  Identities=31%  Similarity=0.483  Sum_probs=94.6

Q ss_pred             HHHHhCCCCcc-cccCCCCCChHHHHHHHHHHHHcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEE
Q 020527          200 EFILSLPCGYE-TLVDDDLLSGGQKQRIAIARAILRDP---AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIV  275 (325)
Q Consensus       200 ~~~~~~~~~~~-~~~~~~~LSgGq~QRv~iAral~~~p---~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~  275 (325)
                      +.++.+..++. .......|||||+||+.|||+|+.+|   +++||||||+|||+.....+.+.|+++.+   .|.|||+
T Consensus       812 ~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~---~G~TVIi  888 (943)
T PRK00349        812 QTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVD---KGNTVVV  888 (943)
T ss_pred             HHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEE
Confidence            34555555442 22234679999999999999999999   99999999999999999999999999864   4789999


Q ss_pred             EecCchHHHhcCEEEEE------eCCEEEEEcChHHHhhcCHHH
Q 020527          276 IAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHKGRLY  313 (325)
Q Consensus       276 vtH~~~~~~~~d~v~~l------~~G~i~~~g~~~~l~~~~~~~  313 (325)
                      |||+++.+..||+|+.|      ++|++++.|+++++......+
T Consensus       889 itH~~~~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~s~  932 (943)
T PRK00349        889 IEHNLDVIKTADWIIDLGPEGGDGGGEIVATGTPEEVAKVEASY  932 (943)
T ss_pred             EecCHHHHHhCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcccH
Confidence            99999999889999999      799999999999998765433

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.96  E-value=4.2e-29  Score=260.16  Aligned_cols=215  Identities=27%  Similarity=0.477  Sum_probs=169.3

Q ss_pred             EEEEEEEEECCCC-CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC--CCCCeEEECCEeCCCCCHHHHhc
Q 020527           80 VQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--PSDGQIYIDGFPLTDLDIRWLRE  156 (325)
Q Consensus        80 i~~~~v~~~y~~~-~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~--~~~G~I~i~g~~i~~~~~~~~r~  156 (325)
                      ...+|+.+.-+.+ ..+++|+|||=-++||-.+||+|+|||||||||++|+|=..  ..+|+|+++|.+..+   ...+|
T Consensus       788 ~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R  864 (1391)
T KOG0065|consen  788 FYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFAR  864 (1391)
T ss_pred             EEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhcc
Confidence            4455555544222 23679999999999999999999999999999999998542  347999999998653   45678


Q ss_pred             ceEEEccCC-cCccccHHHHHhcCC----CCCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 020527          157 KIGFVGQEP-QLLQMDIKSNIMYGC----PKDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA  227 (325)
Q Consensus       157 ~i~~v~Q~~-~l~~~tv~enl~~~~----~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~  227 (325)
                      .+|||-|+. ++...||+|-|.|..    +...+.    +.++++.+..+++++.+.+. |.    .+..||..||+|+.
T Consensus       865 ~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiV-G~----~G~GLs~eQRKrLT  939 (1391)
T KOG0065|consen  865 VSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALV-GL----PGSGLSTEQRKRLT  939 (1391)
T ss_pred             ccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhc-cC----CCCCCCHHHhceee
Confidence            899999987 455789999997642    222222    33556666666665544432 11    12569999999999


Q ss_pred             HHHHHcCCC-CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchH--HHhcCEEEEEe-CCEEEEEcCh
Q 020527          228 IARAILRDP-AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST--IKAVDRIVVID-DGRIIEVGNH  303 (325)
Q Consensus       228 iAral~~~p-~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~--~~~~d~v~~l~-~G~i~~~g~~  303 (325)
                      ||--|+.+| .||+|||||||||..++..+++.++++++   .|.||+++-|.++.  .+..|+++.|+ +|+.|..|+.
T Consensus       940 IgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~---tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~l 1016 (1391)
T KOG0065|consen  940 IGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLAD---TGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPL 1016 (1391)
T ss_pred             EEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHh---cCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCc
Confidence            999999999 89999999999999999999999999985   59999999999984  36799999997 5788999886


Q ss_pred             HH
Q 020527          304 AE  305 (325)
Q Consensus       304 ~~  305 (325)
                      .+
T Consensus      1017 G~ 1018 (1391)
T KOG0065|consen 1017 GE 1018 (1391)
T ss_pred             cc
Confidence            53

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.95  E-value=1.2e-27  Score=225.76  Aligned_cols=165  Identities=28%  Similarity=0.381  Sum_probs=133.7

Q ss_pred             EeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcC-ccccHHHHHhcCCCC
Q 020527          104 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQL-LQMDIKSNIMYGCPK  182 (325)
Q Consensus       104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l-~~~tv~enl~~~~~~  182 (325)
                      +|..||+++++||||-||||++++|+|.++|++|.    ..+          -+|+|=||--.- |.+||.+.+.-..+.
T Consensus       363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~----------~~vSyKPQyI~~~~~gtV~~~l~~~~~~  428 (591)
T COG1245         363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED----------LKVSYKPQYISPDYDGTVEDLLRSAIRS  428 (591)
T ss_pred             eeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc----------ceEeecceeecCCCCCcHHHHHHHhhhh
Confidence            45667889999999999999999999999999997    111          258888886433 689999988643221


Q ss_pred             -CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 020527          183 -DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLH  261 (325)
Q Consensus       183 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~  261 (325)
                       ..+.....+..+-..++.++++.-         .+|||||.|||+||.||.++++++|||||+|.||.+.+-.+-+.++
T Consensus       429 ~~~~s~~~~ei~~pl~l~~i~e~~v---------~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIR  499 (591)
T COG1245         429 AFGSSYFKTEIVKPLNLEDLLERPV---------DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIR  499 (591)
T ss_pred             hcccchhHHhhcCccchHHHHhccc---------ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHH
Confidence             111222334555667777776644         4699999999999999999999999999999999999999999999


Q ss_pred             HhhccCCCCeEEEEEecCchHHHh-cCEEEEEe
Q 020527          262 ALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID  293 (325)
Q Consensus       262 ~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~  293 (325)
                      ++...  .++|.++|-||+-.+.. +||+++++
T Consensus       500 R~~e~--~~kta~vVdHDi~~~dyvsDr~ivF~  530 (591)
T COG1245         500 RFIEN--NEKTALVVDHDIYMIDYVSDRLIVFE  530 (591)
T ss_pred             HHHhh--cCceEEEEecceehhhhhhceEEEEe
Confidence            99764  57899999999999986 99999996

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.95  E-value=6e-28  Score=219.53  Aligned_cols=202  Identities=19%  Similarity=0.215  Sum_probs=130.9

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEe-C-CC-----CCH
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP-L-TD-----LDI  151 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~-i-~~-----~~~  151 (325)
                      .|+++|. ++|.+.   .     ++...++ +++|+||||||||||+.+|++++.+..|++...+.+ + ..     .+.
T Consensus         3 ~i~l~nf-~~~~~~---~-----~~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~   72 (247)
T cd03275           3 RLELENF-KSYKGR---H-----VIGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDS   72 (247)
T ss_pred             EEEEECc-cccCCC---e-----eecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCC
Confidence            3778886 566421   1     2223344 999999999999999999999998888887654421 1 10     011


Q ss_pred             HHHhcceEEEccCCc--CccccHHHHH-hcCC-CCCCCHHHHHHHHHHcCHH--------------HHHHhCCCCccccc
Q 020527          152 RWLREKIGFVGQEPQ--LLQMDIKSNI-MYGC-PKDVKNEDIEWAAKQAYVH--------------EFILSLPCGYETLV  213 (325)
Q Consensus       152 ~~~r~~i~~v~Q~~~--l~~~tv~enl-~~~~-~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~  213 (325)
                      ....-.+.|..|++.  .+..++.+.. .+.. ........+.+.++..++.              ++.+..|.+. ...
T Consensus        73 ~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~-~~~  151 (247)
T cd03275          73 NSAYVTAVYEDDDGEEKTFRRIITGGSSSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGK-RFR  151 (247)
T ss_pred             ceEEEEEEEEcCCCcEEEEEEEEECCceEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcch-hhh
Confidence            122223445445432  2333333321 1111 1122344445555555542              2222222110 011


Q ss_pred             CCCCCChHHHHHHHHHHHHcCC----CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEE
Q 020527          214 DDDLLSGGQKQRIAIARAILRD----PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI  289 (325)
Q Consensus       214 ~~~~LSgGq~QRv~iAral~~~----p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v  289 (325)
                      ...+||+|||||++||||++.+    |+++|+||||++||+..+..+.+.+.++++   .|.++|+|||+.+.+..||++
T Consensus       152 ~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~---~g~~vi~isH~~~~~~~~d~i  228 (247)
T cd03275         152 DMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAG---PNFQFIVISLKEEFFSKADAL  228 (247)
T ss_pred             hHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhcc---CCcEEEEEECCHHHHhhCCeE
Confidence            1256999999999999999864    899999999999999999999999999864   378999999998888789999


Q ss_pred             EEEeC
Q 020527          290 VVIDD  294 (325)
Q Consensus       290 ~~l~~  294 (325)
                      ++|..
T Consensus       229 ~~~~~  233 (247)
T cd03275         229 VGVYR  233 (247)
T ss_pred             EEEEe
Confidence            88864

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.95  E-value=2.8e-27  Score=227.31  Aligned_cols=219  Identities=20%  Similarity=0.314  Sum_probs=138.0

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEEC--CEeCCCCCHHHHhc
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID--GFPLTDLDIRWLRE  156 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~--g~~i~~~~~~~~r~  156 (325)
                      .+.++|++++|.+.   .+++|+.|++.+|+.+||+|+|||||||+|++|.|-..|..-++-+.  .+++..-....+..
T Consensus        75 dvk~~sls~s~~g~---~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~  151 (614)
T KOG0927|consen   75 DVKIESLSLSFHGV---ELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQA  151 (614)
T ss_pred             cceeeeeeeccCCc---eeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHH
Confidence            59999999999764   69999999999999999999999999999999999988865544332  11111100000100


Q ss_pred             ceEEEccCCcCccccHHHHHhcCCCCCCCHH---HHHHHHHHcC-------HHHHHHhCCCCc-ccccCCCCCChHHHHH
Q 020527          157 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNE---DIEWAAKQAY-------VHEFILSLPCGY-ETLVDDDLLSGGQKQR  225 (325)
Q Consensus       157 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~---~~~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~LSgGq~QR  225 (325)
                      -+-..++...-+. --.|.+.-... ....+   .+...+...+       +...+..+...- ........||||+|.|
T Consensus       152 v~~~~~~e~~rle-~~~E~l~~~~d-~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR  229 (614)
T KOG0927|consen  152 VVMETDHERKRLE-YLAEDLAQACD-DKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMR  229 (614)
T ss_pred             HhhhhHHHHHHHH-HHHHHHHhhcc-chhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHH
Confidence            0000000000000 00111111000 00000   0111111111       111111111100 0011125799999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEE-EEEcCh
Q 020527          226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI-IEVGNH  303 (325)
Q Consensus       226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i-~~~g~~  303 (325)
                      ++|||||..+|++|||||||++||+++...+.+.|.++.    .+ ++|+++|+-+++.. |.+|+.|++++. .+.|+.
T Consensus       230 ~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d----~~-~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gny  304 (614)
T KOG0927|consen  230 AALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYD----RI-ILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNY  304 (614)
T ss_pred             HHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhcc----Cc-eEEEEecchhhhhhHhhhhheecccceeeecCCH
Confidence            999999999999999999999999999999998888773    12 89999999999965 999999999995 556676


Q ss_pred             HHHh
Q 020527          304 AELL  307 (325)
Q Consensus       304 ~~l~  307 (325)
                      +...
T Consensus       305 dqy~  308 (614)
T KOG0927|consen  305 DQYV  308 (614)
T ss_pred             HHHh
Confidence            6654

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.95  E-value=4.2e-27  Score=245.51  Aligned_cols=104  Identities=31%  Similarity=0.474  Sum_probs=88.6

Q ss_pred             HHHHhCCCCcc-cccCCCCCChHHHHHHHHHHHHcC---CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEE
Q 020527          200 EFILSLPCGYE-TLVDDDLLSGGQKQRIAIARAILR---DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIV  275 (325)
Q Consensus       200 ~~~~~~~~~~~-~~~~~~~LSgGq~QRv~iAral~~---~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~  275 (325)
                      +.++.+..++. ......+|||||+||+.|||+|+.   +|+++||||||++||+.....+.+.|+++.+   .|.|||+
T Consensus       810 ~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~---~G~TVIv  886 (924)
T TIGR00630       810 QTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVD---QGNTVVV  886 (924)
T ss_pred             HHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEE
Confidence            34445444432 222346799999999999999997   5999999999999999999999999999964   4889999


Q ss_pred             EecCchHHHhcCEEEEE------eCCEEEEEcChHHH
Q 020527          276 IAHRLSTIKAVDRIVVI------DDGRIIEVGNHAEL  306 (325)
Q Consensus       276 vtH~~~~~~~~d~v~~l------~~G~i~~~g~~~~l  306 (325)
                      +||+++.+..||++++|      ++|++++.|+++++
T Consensus       887 i~H~~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l  923 (924)
T TIGR00630       887 IEHNLDVIKTADYIIDLGPEGGDGGGTIVASGTPEEV  923 (924)
T ss_pred             EeCCHHHHHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence            99999998889999999      79999999998875

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.95  E-value=2.1e-27  Score=209.02  Aligned_cols=177  Identities=20%  Similarity=0.204  Sum_probs=118.8

Q ss_pred             ceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCC-CHHHHhcceEEEccCCcCccccHHHH
Q 020527           97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL-DIRWLREKIGFVGQEPQLLQMDIKSN  175 (325)
Q Consensus        97 iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~-~~~~~r~~i~~v~Q~~~l~~~tv~en  175 (325)
                      .++++++++.+| +.+|+||||||||||+.+|...+..... ....|..+..+ ....-...|.+.+|+..++.     |
T Consensus        11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~   83 (198)
T cd03276          11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N   83 (198)
T ss_pred             ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C
Confidence            357788888887 8899999999999999999754332211 11112211110 00011345788888765544     1


Q ss_pred             HhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH----cCCCCEEEEeCCCCCCCHH
Q 020527          176 IMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI----LRDPAILLLDEATSALDSE  251 (325)
Q Consensus       176 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral----~~~p~llllDEPts~LD~~  251 (325)
                           +  .....      ...+.++++.   .........+||+|||||++||+|+    +.+|+++||||||++||+.
T Consensus        84 -----~--~~~~~------~~~~~~~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~  147 (198)
T cd03276          84 -----P--LCVLS------QDMARSFLTS---NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMV  147 (198)
T ss_pred             -----c--CCHHH------HHHHHHHhcc---ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHH
Confidence                 1  10110      1112233332   1111222367999999999999999    6999999999999999999


Q ss_pred             HHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCE
Q 020527          252 SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR  296 (325)
Q Consensus       252 ~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~  296 (325)
                      +...+.+.|.++.++...+.||+++||+++.+..+|+|.+|+.++
T Consensus       148 ~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~  192 (198)
T cd03276         148 NRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD  192 (198)
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence            999999999887542112468999999999998889999998753

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.94  E-value=1.8e-27  Score=227.49  Aligned_cols=199  Identities=23%  Similarity=0.300  Sum_probs=139.7

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .|...+++..|+++   .+|++-++++..|..+||+|+||+|||||||+|+.      |.|.....+      .+.|-  
T Consensus        80 Di~~~~fdLa~G~k---~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve------qE~~g--  142 (582)
T KOG0062|consen   80 DIHIDNFDLAYGGK---ILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE------QEVRG--  142 (582)
T ss_pred             ceeeeeeeeeecch---hhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCch------hheec--
Confidence            58999999999865   69999999999999999999999999999999998      555433321      00110  


Q ss_pred             EEEccCC-cCcc-ccHHHHHhcCC--CCCCCHHHHHH-HHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 020527          159 GFVGQEP-QLLQ-MDIKSNIMYGC--PKDVKNEDIEW-AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL  233 (325)
Q Consensus       159 ~~v~Q~~-~l~~-~tv~enl~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~  233 (325)
                      -+++-.- .+-. .++.+-+.-..  ......+++.. ++.-.+..+-+...|.        ..||||-|-|++|||||.
T Consensus       143 ~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt--------~slSGGWrMrlaLARAlf  214 (582)
T KOG0062|consen  143 DDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPT--------KSLSGGWRMRLALARALF  214 (582)
T ss_pred             cchHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccc--------cccCcchhhHHHHHHHHh
Confidence            0111111 1112 23333332110  00001122222 3334444443433332        579999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEE-EEEcChHHHhh
Q 020527          234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI-IEVGNHAELLH  308 (325)
Q Consensus       234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i-~~~g~~~~l~~  308 (325)
                      .+|+||||||||+.||..+...+.+.|..+      +.|+|+||||-+++.. |..|+.+++-++ .+.|+.+++..
T Consensus       215 ~~pDlLLLDEPTNhLDv~av~WLe~yL~t~------~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk  285 (582)
T KOG0062|consen  215 AKPDLLLLDEPTNHLDVVAVAWLENYLQTW------KITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVK  285 (582)
T ss_pred             cCCCEEeecCCcccchhHHHHHHHHHHhhC------CceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHH
Confidence            999999999999999999999888888776      4699999999999976 999999988777 34577776654

>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]

Probab=99.94  E-value=1e-25  Score=215.71  Aligned_cols=194  Identities=25%  Similarity=0.363  Sum_probs=159.0

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .|.++||-.--|..  ..++..++|+|++|-.+.|+||||||||+|+|+|.|+.|...|...+        ++   +.++
T Consensus       481 gI~lenIpvItP~~--~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~--------P~---~~~m  547 (728)
T KOG0064|consen  481 GIILENIPVITPAG--DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSI--------PR---PNNI  547 (728)
T ss_pred             ceEEecCceeccCc--ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeec--------CC---Ccce
Confidence            38899998877653  35889999999999999999999999999999999999987776543        11   2459


Q ss_pred             EEEccCCcCccccHHHHHhcCC------CCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC-CCCChHHHHHHHHHHH
Q 020527          159 GFVGQEPQLLQMDIKSNIMYGC------PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQRIAIARA  231 (325)
Q Consensus       159 ~~v~Q~~~l~~~tv~enl~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~LSgGq~QRv~iAra  231 (325)
                      -|+||.|+.--+|.+|.|.++.      .+...+.++...++.+.++..+++-. |.+....- ..||||||||+++||.
T Consensus       548 FYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~-g~da~~dWkd~LsgGekQR~~mARm  626 (728)
T KOG0064|consen  548 FYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREG-GWDAVRDWKDVLSGGEKQRMGMARM  626 (728)
T ss_pred             EeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhcc-ChhhhccHHhhccchHHHHHHHHHH
Confidence            9999999876789999988753      12345667778888888887776643 55555442 4699999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEE
Q 020527          232 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI  292 (325)
Q Consensus       232 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l  292 (325)
                      +.++|+.-+|||.||+..++.+..+.+..+..      |.+.+-|||+++....-.+++-+
T Consensus       627 ~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~------gi~llsithrpslwk~h~~ll~~  681 (728)
T KOG0064|consen  627 FYHRPKYALLDECTSAVSIDVEGKIFQAAKDA------GISLLSITHRPSLWKYHTHLLEF  681 (728)
T ss_pred             HhcCcchhhhhhhhcccccchHHHHHHHHHhc------CceEEEeecCccHHHHHHHHHhc
Confidence            99999999999999999999999898888765      89999999999998765555544

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.94  E-value=2.4e-26  Score=219.71  Aligned_cols=195  Identities=23%  Similarity=0.330  Sum_probs=161.2

Q ss_pred             ccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 020527           78 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK  157 (325)
Q Consensus        78 ~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~  157 (325)
                      +.+++.+|+|.|.... -+.+.++++.++.-+.++++|+||+||||++|++.+-..|..|.+.+.+           |.+
T Consensus       361 p~l~i~~V~f~y~p~~-y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r  428 (582)
T KOG0062|consen  361 PNLRISYVAFEYTPSE-YQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR  428 (582)
T ss_pred             CeeEEEeeeccCCCcc-hhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence            3699999999997542 2699999999999999999999999999999999999999999887654           567


Q ss_pred             eEEEccCCcC-ccc--cHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 020527          158 IGFVGQEPQL-LQM--DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR  234 (325)
Q Consensus       158 i~~v~Q~~~l-~~~--tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~  234 (325)
                      |+|.+|...= +..  +..|.++-. .+...++++...+..+|+..-+...+.        ..||||||=||++|.....
T Consensus       429 i~~f~Qhhvd~l~~~v~~vd~~~~~-~pG~~~ee~r~hl~~~Gl~g~la~~si--------~~LSGGQKsrvafA~~~~~  499 (582)
T KOG0062|consen  429 IKYFAQHHVDFLDKNVNAVDFMEKS-FPGKTEEEIRRHLGSFGLSGELALQSI--------ASLSGGQKSRVAFAACTWN  499 (582)
T ss_pred             ecchhHhhhhHHHHHhHHHHHHHHh-CCCCCHHHHHHHHHhcCCCchhhhccc--------cccCCcchhHHHHHHHhcC
Confidence            9999998643 343  344444322 223467788888888887655443332        4699999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEE
Q 020527          235 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIE  299 (325)
Q Consensus       235 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~  299 (325)
                      +|.+|+|||||+.||.++-..+-+.|+.+     +| .||+||||.+++.. |+.+++.++|++..
T Consensus       500 ~PhlLVLDEPTNhLD~dsl~AL~~Al~~F-----~G-GVv~VSHd~~fi~~~c~E~Wvve~g~vt~  559 (582)
T KOG0062|consen  500 NPHLLVLDEPTNHLDRDSLGALAKALKNF-----NG-GVVLVSHDEEFISSLCKELWVVEDGKVTP  559 (582)
T ss_pred             CCcEEEecCCCccccHHHHHHHHHHHHhc-----CC-cEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence            99999999999999999998888888877     23 79999999999976 99999999999965

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.94  E-value=2e-26  Score=216.45  Aligned_cols=198  Identities=26%  Similarity=0.414  Sum_probs=152.6

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .+-+.||+|.|++.  .+.+.+++|-|.-...+|||||||.||||||++|.|-+.|+.|+.+=+           .|-+|
T Consensus       586 vLGlH~VtFgy~gq--kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn-----------hrL~i  652 (807)
T KOG0066|consen  586 VLGLHDVTFGYPGQ--KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN-----------HRLRI  652 (807)
T ss_pred             eeecccccccCCCC--CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc-----------ceeee
Confidence            48899999999875  579999999999999999999999999999999999999999976532           24579


Q ss_pred             EEEccCCc--Cc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 020527          159 GFVGQEPQ--LL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD  235 (325)
Q Consensus       159 ~~v~Q~~~--l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~  235 (325)
                      ||..|+..  |- ..|..|.+.-..  ....+.....+-.+++.......        ....|||||+-||++|-.-+..
T Consensus       653 G~FdQh~~E~L~~Eetp~EyLqr~F--Nlpyq~ARK~LG~fGL~sHAHTi--------kikdLSGGQKaRValaeLal~~  722 (807)
T KOG0066|consen  653 GWFDQHANEALNGEETPVEYLQRKF--NLPYQEARKQLGTFGLASHAHTI--------KIKDLSGGQKARVALAELALGG  722 (807)
T ss_pred             echhhhhHHhhccccCHHHHHHHhc--CCChHHHHHHhhhhhhhhccceE--------eeeecCCcchHHHHHHHHhcCC
Confidence            99999863  32 458888875332  23344445555555554322111        1246999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEE-EcChHH
Q 020527          236 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIE-VGNHAE  305 (325)
Q Consensus       236 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~-~g~~~~  305 (325)
                      |+||||||||++||.++...+-+.|.++.     | .|||||||-.++.. --..+|+++..|-+ .|+.++
T Consensus       723 PDvlILDEPTNNLDIESIDALaEAIney~-----G-gVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeD  788 (807)
T KOG0066|consen  723 PDVLILDEPTNNLDIESIDALAEAINEYN-----G-GVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFED  788 (807)
T ss_pred             CCEEEecCCCCCcchhhHHHHHHHHHhcc-----C-cEEEEecccceeeecCceEEEEccCChhhccccHHH
Confidence            99999999999999999999999998872     3 79999999998865 33566776655533 344443

>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]

Probab=99.92  E-value=1.9e-24  Score=185.76  Aligned_cols=205  Identities=20%  Similarity=0.295  Sum_probs=152.5

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCC-CC-------
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD-LD-------  150 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~-~~-------  150 (325)
                      .|++.++.|+|+..  -+++-|+|++++.|....++|.||||||||||+|+|-.-.-.|.|.++|.+.-. -+       
T Consensus        13 aievsgl~f~y~~~--dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl   90 (291)
T KOG2355|consen   13 AIEVSGLQFKYKVS--DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDL   90 (291)
T ss_pred             eEEEeccEEecccC--CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCce
Confidence            49999999999865  379999999999999999999999999999999999877777999999976422 00       


Q ss_pred             ---HHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 020527          151 ---IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA  227 (325)
Q Consensus       151 ---~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~  227 (325)
                         -.+|++.+++--.-|.--..++.+-| |+.. ....++-+...+..         .  .+..-+.+.+|-|||+||.
T Consensus        91 ~YLGgeW~~~~~~agevplq~D~sae~mi-fgV~-g~dp~Rre~LI~iL---------D--Idl~WRmHkvSDGqrRRVQ  157 (291)
T KOG2355|consen   91 SYLGGEWSKTVGIAGEVPLQGDISAEHMI-FGVG-GDDPERREKLIDIL---------D--IDLRWRMHKVSDGQRRRVQ  157 (291)
T ss_pred             eEecccccccccccccccccccccHHHHH-hhcc-CCChhHhhhhhhhe---------e--ccceEEEeeccccchhhhH
Confidence               11233433333322222234555443 3321 11122222222211         1  1111223569999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEE
Q 020527          228 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEV  300 (325)
Q Consensus       228 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~  300 (325)
                      |+..|++.=++|||||-|--||..++..+++.+++-.++  +|.||++.||-.+=++. ..+++.|++|+++..
T Consensus       158 icMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~--RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~  229 (291)
T KOG2355|consen  158 ICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQ--RGATIVYATHIFDGLETWPTHLVYIKSGKLVDN  229 (291)
T ss_pred             HHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhh--cCcEEEEEeeeccchhhcchhEEEecCCeeeec
Confidence            999999999999999999999999999999999988765  58999999999987754 999999999999874

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.91  E-value=5e-24  Score=187.77  Aligned_cols=147  Identities=17%  Similarity=0.120  Sum_probs=108.1

Q ss_pred             ceeeeeEEeeCCc-EEEEEcCCCChHHHHHHHHH--------cCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcC
Q 020527           97 ILNHVCLTIEANE-VVAIVGLSGSGKSTFVNLLL--------RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQL  167 (325)
Q Consensus        97 iL~~isl~i~~Ge-~~~iiG~nGsGKSTLl~~l~--------gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l  167 (325)
                      .+.++||++.+|+ +++|+||||||||||+|+|+        |.+-|....                 ..++|+.|....
T Consensus        16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~-----------------~~~~~~~~~~~~   78 (200)
T cd03280          16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEG-----------------SSLPVFENIFAD   78 (200)
T ss_pred             ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccccc-----------------ccCcCccEEEEe
Confidence            4568999999995 79999999999999999998        443332110                 123444443211


Q ss_pred             ccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCC
Q 020527          168 LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSA  247 (325)
Q Consensus       168 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~  247 (325)
                      +          +    . .             +.+...         ...+|+||||++.+++++ .+|+++++||||++
T Consensus        79 l----------g----~-~-------------~~l~~~---------~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~g  120 (200)
T cd03280          79 I----------G----D-E-------------QSIEQS---------LSTFSSHMKNIARILQHA-DPDSLVLLDELGSG  120 (200)
T ss_pred             c----------C----c-h-------------hhhhcC---------cchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCC
Confidence            0          0    0 0             001100         035899999999999885 89999999999999


Q ss_pred             CCHHHHHHHH-HHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEc
Q 020527          248 LDSESEHYVK-GVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG  301 (325)
Q Consensus       248 LD~~~~~~i~-~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g  301 (325)
                      +|+.....+. ..++.+.+   .+.++|++||+.+....||+++.|++|++..++
T Consensus       121 lD~~~~~~i~~~~l~~l~~---~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~~  172 (200)
T cd03280         121 TDPVEGAALAIAILEELLE---RGALVIATTHYGELKAYAYKREGVENASMEFDP  172 (200)
T ss_pred             CCHHHHHHHHHHHHHHHHh---cCCEEEEECCHHHHHHHHhcCCCeEEEEEEEec
Confidence            9999998886 46777754   378999999996666679999999999998763

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.91  E-value=1.3e-23  Score=181.85  Aligned_cols=74  Identities=24%  Similarity=0.374  Sum_probs=68.2

Q ss_pred             CChHHHHHHHHHHHHc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEe
Q 020527          218 LSGGQKQRIAIARAIL----RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVID  293 (325)
Q Consensus       218 LSgGq~QRv~iAral~----~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~  293 (325)
                      ||+||+||++|||+++    .+|+++|+|||+++||+.....+.+.+.++.+   .|.++|++||+++.+..+|+++.+.
T Consensus        95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~---~g~tiIiiSH~~~~~~~adrvi~i~  171 (178)
T cd03239          95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAK---HTSQFIVITLKKEMFENADKLIGVL  171 (178)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEECCHHHHhhCCeEEEEE
Confidence            8999999999999996    69999999999999999999999999998864   3689999999999888899999987


Q ss_pred             C
Q 020527          294 D  294 (325)
Q Consensus       294 ~  294 (325)
                      +
T Consensus       172 ~  172 (178)
T cd03239         172 F  172 (178)
T ss_pred             E
Confidence            5

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.90  E-value=6.8e-23  Score=182.26  Aligned_cols=183  Identities=15%  Similarity=0.128  Sum_probs=110.3

Q ss_pred             eeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHH-Hh-----cceEEEccCCcCcccc
Q 020527           98 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LR-----EKIGFVGQEPQLLQMD  171 (325)
Q Consensus        98 L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~-~r-----~~i~~v~Q~~~l~~~t  171 (325)
                      ++++.+++.+| +.+|+||||||||||+.+|.-.+-...... ....     ...+ ++     ..|-..++...-  .=
T Consensus        14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~-~r~~-----~~~~~i~~g~~~~~v~~~~~~~~~--~~   84 (213)
T cd03277          14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLL-GRAK-----KVGEFVKRGCDEGTIEIELYGNPG--NI   84 (213)
T ss_pred             cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCcccc-cccc-----CHHHHhhCCCCcEEEEEEEEeCCC--cc
Confidence            45667777665 778999999999999999876553221100 0000     0011 11     112222211100  00


Q ss_pred             HHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcc-cccCCCCCChHHHHHHHHHHHH----cCCCCEEEEeCCCC
Q 020527          172 IKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE-TLVDDDLLSGGQKQRIAIARAI----LRDPAILLLDEATS  246 (325)
Q Consensus       172 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~LSgGq~QRv~iAral----~~~p~llllDEPts  246 (325)
                      ..+|+.+.    .......+.... .-.+.+..++.+.. ......+||+|||||+.+|+++    +.+|+++|+||||+
T Consensus        85 ~~~n~~~~----~~q~~~~~~~~~-~~~e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~  159 (213)
T cd03277          85 QVDNLCQF----LPQDRVGEFAKL-SPIELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQ  159 (213)
T ss_pred             ccCCceEE----EchHHHHHHHhC-ChHhHheeeecCCCccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccc
Confidence            22333221    112222233222 22234444443322 1223468999999999877554    58999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhccCCCC-eEEEEEecCchHH-HhcC--EEEEEeCCE
Q 020527          247 ALDSESEHYVKGVLHALRNDCKTK-RTVIVIAHRLSTI-KAVD--RIVVIDDGR  296 (325)
Q Consensus       247 ~LD~~~~~~i~~~l~~l~~~~~~g-~tvi~vtH~~~~~-~~~d--~v~~l~~G~  296 (325)
                      +||+.++..+.+.+.++.++  .| .|+|++||++... ..||  +|++|++|+
T Consensus       160 ~LD~~~~~~i~~~l~~~~~~--~g~~~viiith~~~~~~~~~~~~~v~~l~~g~  211 (213)
T cd03277         160 GMDPTNERKVFDMLVETACK--EGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP  211 (213)
T ss_pred             cCCHHHHHHHHHHHHHHhhc--CCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence            99999999999999998642  24 5899999998765 4455  889999886

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.90  E-value=8.2e-24  Score=199.95  Aligned_cols=187  Identities=25%  Similarity=0.313  Sum_probs=134.6

Q ss_pred             EEEEECCCCCCCCceeeeeE-EeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCC-------H----
Q 020527           84 NISFHYPSRPTVPILNHVCL-TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-------I----  151 (325)
Q Consensus        84 ~v~~~y~~~~~~~iL~~isl-~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~-------~----  151 (325)
                      ++..+|+.+    -++=..+ ..++|+++||+||||-||||-+|+|+|.+.|.=|+-  ++.+  +++       -    
T Consensus        79 e~vHRYg~N----gFkL~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~--~~pp--~wdeVi~~FrGtELq  150 (591)
T COG1245          79 EVVHRYGVN----GFKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--EDPP--SWDEVIKRFRGTELQ  150 (591)
T ss_pred             cceeeccCC----ceEEecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC--CCCC--CHHHHHHHhhhhHHH
Confidence            366788754    2333333 357899999999999999999999999999987753  2211  111       0    


Q ss_pred             ---HHHh---cceEEEccC----CcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChH
Q 020527          152 ---RWLR---EKIGFVGQE----PQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGG  221 (325)
Q Consensus       152 ---~~~r---~~i~~v~Q~----~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgG  221 (325)
                         +.+.   -++..=||-    |..+.++|.|-+.-..    ......+..++.++.+.+++-.         .+||||
T Consensus       151 ~YF~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~d----e~g~~devve~l~L~nvl~r~v---------~~LSGG  217 (591)
T COG1245         151 NYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVD----ERGKFDEVVERLGLENVLDRDV---------SELSGG  217 (591)
T ss_pred             HHHHHHHcCCcceecchHHHHHHHHHhcchHHHHHHhhh----hcCcHHHHHHHhcchhhhhhhh---------hhcCch
Confidence               1111   112333332    3334577777664310    0112345566666666665533         579999


Q ss_pred             HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeC
Q 020527          222 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD  294 (325)
Q Consensus       222 q~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~  294 (325)
                      |.||++||.|++++++++++|||||-||...+-..-+.++++.+   .+++||+|.||+..+.. +|-|.++..
T Consensus       218 ELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~---~~k~ViVVEHDLavLD~lsD~vhI~YG  288 (591)
T COG1245         218 ELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAE---DGKYVIVVEHDLAVLDYLSDFVHILYG  288 (591)
T ss_pred             HHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhc---cCCeEEEEechHHHHHHhhheeEEEec
Confidence            99999999999999999999999999999999999999999975   37899999999999976 899988863

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=99.89  E-value=5.1e-23  Score=190.12  Aligned_cols=76  Identities=21%  Similarity=0.330  Sum_probs=68.5

Q ss_pred             CCChHHHHHHHHHHHHcC----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEE
Q 020527          217 LLSGGQKQRIAIARAILR----DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI  292 (325)
Q Consensus       217 ~LSgGq~QRv~iAral~~----~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l  292 (325)
                      .|||||+||+++|++++.    +|+++|+||||++||+.....+.+.+.++.+    +.|+|++||+++....||++++|
T Consensus       170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~----~~tii~isH~~~~~~~~d~~~~l  245 (276)
T cd03241         170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR----SHQVLCITHLPQVAAMADNHFLV  245 (276)
T ss_pred             hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC----CCEEEEEechHHHHHhcCcEEEE
Confidence            499999999999997653    9999999999999999999999999998853    57999999999977779999999


Q ss_pred             eCCE
Q 020527          293 DDGR  296 (325)
Q Consensus       293 ~~G~  296 (325)
                      .+|.
T Consensus       246 ~~~~  249 (276)
T cd03241         246 EKEV  249 (276)
T ss_pred             EEec
Confidence            8874

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.88  E-value=1.1e-22  Score=212.55  Aligned_cols=201  Identities=23%  Similarity=0.406  Sum_probs=161.0

Q ss_pred             CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC---CCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cc
Q 020527           95 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP---SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QM  170 (325)
Q Consensus        95 ~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~---~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~  170 (325)
                      ..+|+|+|.-+++|+.+.++||.|||||||+++++|-.+-   ..|+|.+||.+.++...   ++.++|++|+..-+ .+
T Consensus       128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~l  204 (1391)
T KOG0065|consen  128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPEL  204 (1391)
T ss_pred             ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEecccccccccee
Confidence            4699999999999999999999999999999999998753   35799999999877644   67899999987666 69


Q ss_pred             cHHHHHhcCCC--------CCCCHHH-----HHHHHHHcCHHHHHHhCCCCcccccCC---CCCChHHHHHHHHHHHHcC
Q 020527          171 DIKSNIMYGCP--------KDVKNED-----IEWAAKQAYVHEFILSLPCGYETLVDD---DLLSGGQKQRIAIARAILR  234 (325)
Q Consensus       171 tv~enl~~~~~--------~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~LSgGq~QRv~iAral~~  234 (325)
                      ||+|-+.|...        ....+.+     .+..++..|++       +..++.++.   ...|||||+||.+|-+++.
T Consensus       205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~-------~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~  277 (1391)
T KOG0065|consen  205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLD-------HCADTLVGNDMVRGVSGGERKRVSIGEMLVG  277 (1391)
T ss_pred             EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCch-------hhccceecccccccccCcccceeeeeeeeec
Confidence            99999976421        0111111     11222333332       234455542   4589999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchH--HHhcCEEEEEeCCEEEEEcChHHHh
Q 020527          235 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST--IKAVDRIVVIDDGRIIEVGNHAELL  307 (325)
Q Consensus       235 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~--~~~~d~v~~l~~G~i~~~g~~~~l~  307 (325)
                      +|+++++||+|.|||..+.-++.+.++++.+.  .+.|.+++-|..+.  ....|.|++|.+|+++..|+.++.+
T Consensus       278 ~~~~~~~De~t~GLDSsTal~iik~lr~~a~~--~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~  350 (1391)
T KOG0065|consen  278 PASILFWDEITRGLDSSTAFQIIKALRQLAHI--TGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVL  350 (1391)
T ss_pred             CcceeeeecccccccHHHHHHHHHHHHHHHhh--hcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHH
Confidence            99999999999999999999999999999764  47788888888764  3569999999999999999998875

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.87  E-value=4.3e-22  Score=169.79  Aligned_cols=138  Identities=23%  Similarity=0.276  Sum_probs=101.9

Q ss_pred             eeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEE-EccCCcCccccHHHHHhc
Q 020527          100 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF-VGQEPQLLQMDIKSNIMY  178 (325)
Q Consensus       100 ~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~-v~Q~~~l~~~tv~enl~~  178 (325)
                      ..++.+.++.++.|+|||||||||+++.+....-..+|.+.... +.          +.++ +++...-|        .+
T Consensus        13 ~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~----------~~g~~~~~~~~~~--------i~   73 (162)
T cd03227          13 PNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV----------KAGCIVAAVSAEL--------IF   73 (162)
T ss_pred             ccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc----------cCCCcceeeEEEE--------eh
Confidence            33445556679999999999999999998877655555443310 00          1111 11111000        00


Q ss_pred             CCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC----CCCEEEEeCCCCCCCHHHHH
Q 020527          179 GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR----DPAILLLDEATSALDSESEH  254 (325)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~----~p~llllDEPts~LD~~~~~  254 (325)
                                              .           ..+||+||+||+++||+|..    +|+++|+|||++++|+....
T Consensus        74 ------------------------~-----------~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~  118 (162)
T cd03227          74 ------------------------T-----------RLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQ  118 (162)
T ss_pred             ------------------------h-----------eeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHH
Confidence                                    0           01389999999999999986    78999999999999999999


Q ss_pred             HHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeC
Q 020527          255 YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD  294 (325)
Q Consensus       255 ~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~  294 (325)
                      .+.+.+.++.++   +.++|++||+.+....+|+++.|+.
T Consensus       119 ~l~~~l~~~~~~---~~~vii~TH~~~~~~~~d~~~~l~~  155 (162)
T cd03227         119 ALAEAILEHLVK---GAQVIVITHLPELAELADKLIHIKK  155 (162)
T ss_pred             HHHHHHHHHHhc---CCEEEEEcCCHHHHHhhhhEEEEEE
Confidence            999999887642   6799999999999988999999964

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=99.86  E-value=2.5e-21  Score=181.36  Aligned_cols=180  Identities=26%  Similarity=0.394  Sum_probs=137.4

Q ss_pred             CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcC--------CCCCCCeEEECCEeCCCCCHHHHhcceEEEccC--
Q 020527           95 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--------YEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE--  164 (325)
Q Consensus        95 ~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl--------~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~--  164 (325)
                      ..+|+|+||+|++|++++|+|+|||||||+|++|+|.        |+|++|.|.+--..+           -+++|-.  
T Consensus       396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~-----------~a~iPge~E  464 (593)
T COG2401         396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV-----------SALIPGEYE  464 (593)
T ss_pred             eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccch-----------hhccCcccc
Confidence            4689999999999999999999999999999999996        578999887643221           2344443  


Q ss_pred             CcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCC
Q 020527          165 PQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEA  244 (325)
Q Consensus       165 ~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEP  244 (325)
                      |.+-..|+.|.+.--   ..+-....+.+..+++.+..-.       .....+||-|||.|.-||+++...|.+++.||-
T Consensus       465 p~f~~~tilehl~s~---tGD~~~AveILnraGlsDAvly-------Rr~f~ELStGQKeR~KLAkllaerpn~~~iDEF  534 (593)
T COG2401         465 PEFGEVTILEHLRSK---TGDLNAAVEILNRAGLSDAVLY-------RRKFSELSTGQKERAKLAKLLAERPNVLLIDEF  534 (593)
T ss_pred             cccCchhHHHHHhhc---cCchhHHHHHHHhhccchhhhh-------hccHhhcCcchHHHHHHHHHHhcCCCcEEhhhh
Confidence            222245777776531   1111223345666666543211       111257999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh--cCEEEEEeCCEE
Q 020527          245 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVIDDGRI  297 (325)
Q Consensus       245 ts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~--~d~v~~l~~G~i  297 (325)
                      -|.||+.+..++.+-+.+++++  .|.|++++||+.+....  -|.++.+.=|..
T Consensus       535 ~AhLD~~TA~rVArkiselaRe--~giTlivvThrpEv~~AL~PD~li~vgYg~v  587 (593)
T COG2401         535 AAHLDELTAVRVARKISELARE--AGITLIVVTHRPEVGNALRPDTLILVGYGKV  587 (593)
T ss_pred             hhhcCHHHHHHHHHHHHHHHHH--hCCeEEEEecCHHHHhccCCceeEEeecccc
Confidence            9999999999999999999874  58999999999999864  599988876654

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=99.86  E-value=8.7e-22  Score=176.21  Aligned_cols=152  Identities=18%  Similarity=0.199  Sum_probs=110.3

Q ss_pred             CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE-EEccCCcCccccHHH
Q 020527           96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG-FVGQEPQLLQMDIKS  174 (325)
Q Consensus        96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~-~v~Q~~~l~~~tv~e  174 (325)
                      .+.+|++++++++++++|.||||+|||||+++++-                     ..+..++| |||.+...+  .+.+
T Consensus        18 ~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~---------------------~~~la~~g~~vpa~~~~~--~~~~   74 (222)
T cd03285          18 FIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV---------------------IVLMAQIGCFVPCDSADI--PIVD   74 (222)
T ss_pred             eEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH---------------------HHHHHHhCCCcCcccEEE--eccc
Confidence            58999999999999999999999999999999982                     11233455 677664322  1222


Q ss_pred             HHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH--cCCCCEEEEeCC---CCCCC
Q 020527          175 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI--LRDPAILLLDEA---TSALD  249 (325)
Q Consensus       175 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral--~~~p~llllDEP---ts~LD  249 (325)
                      .+.                ...++.+.+            ...+|.|++|+..+++++  +.+|+++|||||   |+++|
T Consensus        75 ~il----------------~~~~l~d~~------------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD  126 (222)
T cd03285          75 CIL----------------ARVGASDSQ------------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYD  126 (222)
T ss_pred             eeE----------------eeeccccch------------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHH
Confidence            211                111111111            135899999999999999  899999999999   99999


Q ss_pred             HHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcC
Q 020527          250 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGN  302 (325)
Q Consensus       250 ~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~  302 (325)
                      +.....  ..++.+.++  .+.++|++||+.+....||++..+++|++...++
T Consensus       127 ~~~~~~--~il~~l~~~--~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~  175 (222)
T cd03285         127 GFGLAW--AIAEYIATQ--IKCFCLFATHFHELTALADEVPNVKNLHVTALTD  175 (222)
T ss_pred             HHHHHH--HHHHHHHhc--CCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence            987753  333444431  3789999999755556699999999999876653

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.86  E-value=3.7e-21  Score=209.61  Aligned_cols=111  Identities=24%  Similarity=0.331  Sum_probs=95.7

Q ss_pred             HHHHhCCCCcccccC-CCCCChHHHHHHHHHHHHcCC---CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEE
Q 020527          200 EFILSLPCGYETLVD-DDLLSGGQKQRIAIARAILRD---PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIV  275 (325)
Q Consensus       200 ~~~~~~~~~~~~~~~-~~~LSgGq~QRv~iAral~~~---p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~  275 (325)
                      +.+...+.||.+.=. ...|||||.||+-||.-|..+   +.+++|||||.||++...+++++.|+++..   .|.|||+
T Consensus      1681 ~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~---~g~tviv 1757 (1809)
T PRK00635       1681 QALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVS---LGHSVIY 1757 (1809)
T ss_pred             HHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHh---cCCeEEE
Confidence            456667777765433 357999999999999999875   789999999999999999999999999975   5889999


Q ss_pred             EecCchHHHhcCEEEEE------eCCEEEEEcChHHHhhcCHHH
Q 020527          276 IAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHKGRLY  313 (325)
Q Consensus       276 vtH~~~~~~~~d~v~~l------~~G~i~~~g~~~~l~~~~~~~  313 (325)
                      |.||++.++.||+|+-|      +.|+|++.|+|+++...+..+
T Consensus      1758 ieH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~~S~ 1801 (1809)
T PRK00635       1758 IDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISASKDSL 1801 (1809)
T ss_pred             EeCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhhCCCCc
Confidence            99999999999999999      458999999999998765433

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.85  E-value=1.4e-20  Score=188.45  Aligned_cols=111  Identities=32%  Similarity=0.508  Sum_probs=94.0

Q ss_pred             HHhCCCCcccccC-CCCCChHHHHHHHHHHHHcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEe
Q 020527          202 ILSLPCGYETLVD-DDLLSGGQKQRIAIARAILRDP---AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIA  277 (325)
Q Consensus       202 ~~~~~~~~~~~~~-~~~LSgGq~QRv~iAral~~~p---~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vt  277 (325)
                      +.....+|-+.=. ...|||||.|||=||.-|.+..   -++||||||.||-....+++++.|.++..   .|.|||+|-
T Consensus       806 L~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd---~GnTViVIE  882 (935)
T COG0178         806 LVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVD---KGNTVIVIE  882 (935)
T ss_pred             HHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEe
Confidence            3344455443222 2579999999999999999877   89999999999999999999999999975   588999999


Q ss_pred             cCchHHHhcCEEEEE------eCCEEEEEcChHHHhhcCHHHHH
Q 020527          278 HRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHKGRLYAK  315 (325)
Q Consensus       278 H~~~~~~~~d~v~~l------~~G~i~~~g~~~~l~~~~~~~~~  315 (325)
                      |+++.++.||+|+-|      +.|+|++.|+|+++.+....|..
T Consensus       883 HNLdVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~~~~S~Tg  926 (935)
T COG0178         883 HNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAKVKASYTG  926 (935)
T ss_pred             cccceEeecCEEEEcCCCCCCCCceEEEecCHHHHHhCccchhH
Confidence            999999999999999      46899999999999876555543

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=99.85  E-value=1.3e-21  Score=172.30  Aligned_cols=144  Identities=19%  Similarity=0.246  Sum_probs=101.0

Q ss_pred             CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHH
Q 020527           96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKS  174 (325)
Q Consensus        96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~e  174 (325)
                      .+++|++++.  |++++|+||||||||||+|+|+|...     +.+.|.++...         .+++|...+| ..|+.|
T Consensus        15 ~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~---------~~~~q~~~l~~~~~~~d   78 (199)
T cd03283          15 RVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS---------SFELPPVKIFTSIRVSD   78 (199)
T ss_pred             eecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC---------ccCcccceEEEeccchh
Confidence            4788887765  79999999999999999999988553     22355554321         3567755566 689999


Q ss_pred             HHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHH
Q 020527          175 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH  254 (325)
Q Consensus       175 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~  254 (325)
                      |+.++...  ...+.      ..+.+.++...           +               .+|+++|+||||+++|+....
T Consensus        79 ~l~~~~s~--~~~e~------~~~~~iL~~~~-----------~---------------~~p~llllDEp~~glD~~~~~  124 (199)
T cd03283          79 DLRDGISY--FYAEL------RRLKEIVEKAK-----------K---------------GEPVLFLLDEIFKGTNSRERQ  124 (199)
T ss_pred             ccccccCh--HHHHH------HHHHHHHHhcc-----------C---------------CCCeEEEEecccCCCCHHHHH
Confidence            99886321  11111      12344444332           1               799999999999999999887


Q ss_pred             HHH-HHHHHhhccCCCCeEEEEEecCchHHHh---cCEEEEE
Q 020527          255 YVK-GVLHALRNDCKTKRTVIVIAHRLSTIKA---VDRIVVI  292 (325)
Q Consensus       255 ~i~-~~l~~l~~~~~~g~tvi~vtH~~~~~~~---~d~v~~l  292 (325)
                      .+. .+++.+.+   .+.++|++||+++.+..   .++|-.+
T Consensus       125 ~l~~~ll~~l~~---~~~tiiivTH~~~~~~~~~~~~~v~~~  163 (199)
T cd03283         125 AASAAVLKFLKN---KNTIGIISTHDLELADLLDLDSAVRNY  163 (199)
T ss_pred             HHHHHHHHHHHH---CCCEEEEEcCcHHHHHhhhcCCCeEEE
Confidence            765 46777754   37899999999998754   3455443

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=99.84  E-value=2.8e-21  Score=170.53  Aligned_cols=155  Identities=12%  Similarity=0.104  Sum_probs=104.9

Q ss_pred             eeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcC-CCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHh
Q 020527           99 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL-YEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIM  177 (325)
Q Consensus        99 ~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl-~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~  177 (325)
                      -..++++.+|++++|+||||||||||+++|++. +.+..|....          . .+..+++..|...  .....+++.
T Consensus        20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~----------~-~~~~i~~~dqi~~--~~~~~d~i~   86 (202)
T cd03243          20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP----------A-ESASIPLVDRIFT--RIGAEDSIS   86 (202)
T ss_pred             EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc----------c-cccccCCcCEEEE--EecCccccc
Confidence            444556678999999999999999999999953 3333332110          0 1223444333221  111111111


Q ss_pred             cCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHH
Q 020527          178 YGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK  257 (325)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~  257 (325)
                      .+                                   ...+|.+++| +..+.+++.+|+++|+||||+++|+.....+.
T Consensus        87 ~~-----------------------------------~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~  130 (202)
T cd03243          87 DG-----------------------------------RSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIA  130 (202)
T ss_pred             CC-----------------------------------ceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHH
Confidence            00                                   0235666665 66667888999999999999999999887775


Q ss_pred             H-HHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHH
Q 020527          258 G-VLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAE  305 (325)
Q Consensus       258 ~-~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~  305 (325)
                      . +++.+.+   .+.++|++||+.+.+..|+++..++.|++...++..+
T Consensus       131 ~~ll~~l~~---~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~  176 (202)
T cd03243         131 YAVLEHLLE---KGCRTLFATHFHELADLPEQVPGVKNLHMEELITTGG  176 (202)
T ss_pred             HHHHHHHHh---cCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCCe
Confidence            5 4566653   3789999999998888899999999999988776533

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=99.82  E-value=2.2e-19  Score=165.38  Aligned_cols=74  Identities=22%  Similarity=0.327  Sum_probs=62.2

Q ss_pred             CCChHHHHHHHHHHHHc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hc
Q 020527          217 LLSGGQKQRIAIARAIL---------RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AV  286 (325)
Q Consensus       217 ~LSgGq~QRv~iAral~---------~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~  286 (325)
                      .+|+||+|+++|||+|+         .+|+++|+||||++||+..+..+.+.+.++      + .+++++|+...+. .|
T Consensus       183 ~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~------~-q~ii~~~~~~~~~~~~  255 (270)
T cd03242         183 FGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR------V-QTFVTTTDLADFDALW  255 (270)
T ss_pred             hCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC------C-CEEEEeCCchhccchh
Confidence            48999999999999985         799999999999999999999998888765      2 3566666666554 36


Q ss_pred             ---CEEEEEeCCEE
Q 020527          287 ---DRIVVIDDGRI  297 (325)
Q Consensus       287 ---d~v~~l~~G~i  297 (325)
                         ++++.+++|++
T Consensus       256 ~~~~~i~~l~~g~i  269 (270)
T cd03242         256 LRRAQIFRVDAGTL  269 (270)
T ss_pred             ccCccEEEEeCcEE
Confidence               78999999986

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.82  E-value=8.4e-21  Score=178.78  Aligned_cols=203  Identities=19%  Similarity=0.339  Sum_probs=134.8

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHc--CCCCCCCeEEECCEeCCCCCHHH---
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR--LYEPSDGQIYIDGFPLTDLDIRW---  153 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~g--l~~~~~G~I~i~g~~i~~~~~~~---  153 (325)
                      .|.++|.+.+-.++   ..+.|.|+.|-.|..+++|||||-||||||+-|+.  +--|..=.|.+..+.+..-+...   
T Consensus       264 DIKiEnF~ISA~Gk---~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~t  340 (807)
T KOG0066|consen  264 DIKIENFDISAQGK---LLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDT  340 (807)
T ss_pred             cceeeeeeeecccc---eeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHH
Confidence            48999999887654   58999999999999999999999999999999873  32344445666665553221110   


Q ss_pred             -H---hcceEEEccCCcC---c---cccHHHHHhcCCCCCCCHHHHHHHHHHc-------CHHHHHHhCCCCccc-ccCC
Q 020527          154 -L---REKIGFVGQEPQL---L---QMDIKSNIMYGCPKDVKNEDIEWAAKQA-------YVHEFILSLPCGYET-LVDD  215 (325)
Q Consensus       154 -~---r~~i~~v~Q~~~l---~---~~tv~enl~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-~~~~  215 (325)
                       +   .++..++-....|   +   ..|+.|-+.-          +..-++..       .....+..++..-.. .+..
T Consensus       341 vl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~----------v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt  410 (807)
T KOG0066|consen  341 VLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKE----------VADELRAIGADSAEARARRILAGLGFSKEMQERPT  410 (807)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHH----------HHHHHHHhccccchhHHHHHHhhcCCChhHhcCCc
Confidence             0   1122222221111   1   1233332210          00011111       111222222211111 1112


Q ss_pred             CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeC
Q 020527          216 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD  294 (325)
Q Consensus       216 ~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~  294 (325)
                      ..+|||-|-||+|||||..+|-+|.|||||+.||......+-+.|..|      .+|+++||||-.++.. |..|+.+++
T Consensus       411 ~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW------kKTLLIVSHDQgFLD~VCtdIIHLD~  484 (807)
T KOG0066|consen  411 TKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW------KKTLLIVSHDQGFLDSVCTDIIHLDN  484 (807)
T ss_pred             cccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh------hheeEEEecccchHHHHHHHHhhhhh
Confidence            469999999999999999999999999999999999988888888777      3599999999999975 999999999


Q ss_pred             CEEEEE
Q 020527          295 GRIIEV  300 (325)
Q Consensus       295 G~i~~~  300 (325)
                      .++..+
T Consensus       485 qkLhyY  490 (807)
T KOG0066|consen  485 QKLHYY  490 (807)
T ss_pred             hhhhhh
Confidence            887543

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.80  E-value=2.7e-19  Score=187.53  Aligned_cols=106  Identities=30%  Similarity=0.465  Sum_probs=92.7

Q ss_pred             HHHhCCCCcc-cccCCCCCChHHHHHHHHHHHHcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEe
Q 020527          201 FILSLPCGYE-TLVDDDLLSGGQKQRIAIARAILRDP--AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIA  277 (325)
Q Consensus       201 ~~~~~~~~~~-~~~~~~~LSgGq~QRv~iAral~~~p--~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vt  277 (325)
                      +++.+..++. ......+|||||+|||+|||||+.+|  +++||||||++||+.....+.++|+++++   .|.|||+|+
T Consensus       472 ~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~---~G~TVIvVe  548 (943)
T PRK00349        472 FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRD---LGNTLIVVE  548 (943)
T ss_pred             HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHh---CCCEEEEEe
Confidence            4566555433 23445789999999999999999997  99999999999999999999999999964   488999999


Q ss_pred             cCchHHHhcCEEEEE------eCCEEEEEcChHHHhhc
Q 020527          278 HRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHK  309 (325)
Q Consensus       278 H~~~~~~~~d~v~~l------~~G~i~~~g~~~~l~~~  309 (325)
                      ||++.+..||+|++|      ++|+++..|+++++...
T Consensus       549 H~~~~i~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~~  586 (943)
T PRK00349        549 HDEDTIRAADYIVDIGPGAGVHGGEVVASGTPEEIMKN  586 (943)
T ss_pred             CCHHHHHhCCEEEEeccccCCCCCEEeeccCHHHHhcC
Confidence            999998789999999      99999999999998654

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.79  E-value=4.3e-19  Score=185.76  Aligned_cols=105  Identities=30%  Similarity=0.452  Sum_probs=90.9

Q ss_pred             HHhCCCCcc-cccCCCCCChHHHHHHHHHHHHcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEec
Q 020527          202 ILSLPCGYE-TLVDDDLLSGGQKQRIAIARAILRDP--AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH  278 (325)
Q Consensus       202 ~~~~~~~~~-~~~~~~~LSgGq~QRv~iAral~~~p--~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH  278 (325)
                      +..+..++. ......+|||||+|||.|||||+.+|  +++||||||+|||+.....+.++|+++++   +|.|||+|+|
T Consensus       471 L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~---~G~TVIvVeH  547 (924)
T TIGR00630       471 LIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRD---LGNTVIVVEH  547 (924)
T ss_pred             HhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHh---CCCEEEEEEC
Confidence            444444433 23345789999999999999999986  89999999999999999999999999974   4889999999


Q ss_pred             CchHHHhcCEEEEE------eCCEEEEEcChHHHhhc
Q 020527          279 RLSTIKAVDRIVVI------DDGRIIEVGNHAELLHK  309 (325)
Q Consensus       279 ~~~~~~~~d~v~~l------~~G~i~~~g~~~~l~~~  309 (325)
                      |++.+..||+|++|      ++|+|+..|+++++...
T Consensus       548 d~~~i~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~~~  584 (924)
T TIGR00630       548 DEETIRAADYVIDIGPGAGIHGGEVVASGTPEEILAN  584 (924)
T ss_pred             CHHHHhhCCEEEEecccccCCCCEEeeccCHHHHhcC
Confidence            99998889999999      99999999999998643

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=99.79  E-value=1.6e-18  Score=163.11  Aligned_cols=197  Identities=22%  Similarity=0.359  Sum_probs=143.6

Q ss_pred             EECCCCCCCCceeeeeEEeeCCc-----EEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 020527           87 FHYPSRPTVPILNHVCLTIEANE-----VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV  161 (325)
Q Consensus        87 ~~y~~~~~~~iL~~isl~i~~Ge-----~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v  161 (325)
                      ++|++-  +.-+.+..|.|+.|+     ++..+|+||.|||||+++++|.++|++|      .++..+       .|+|=
T Consensus       343 y~Yp~m--~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~------~e~p~l-------nVSyk  407 (592)
T KOG0063|consen  343 YSYPKM--KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEG------GEIPVL-------NVSYK  407 (592)
T ss_pred             eccCcc--eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCcc------Cccccc-------ceecc
Confidence            346542  457889999999986     5789999999999999999999999977      122222       47787


Q ss_pred             ccCCcC-ccccHHHHHhcCC-CCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEE
Q 020527          162 GQEPQL-LQMDIKSNIMYGC-PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL  239 (325)
Q Consensus       162 ~Q~~~l-~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ll  239 (325)
                      ||...- +.+||++-+.--. ........+.+..+-..+++.+++-.         .+|||||.|||++|-+|=..++++
T Consensus       408 pqkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~ie~i~dqev---------q~lSggelQRval~KOGGKpAdvY  478 (592)
T KOG0063|consen  408 PQKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPLQIENIIDQEV---------QGLSGGELQRVALALCLGKPADVY  478 (592)
T ss_pred             ccccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhhhHHHHHhHHh---------hcCCchhhHHHHHHHhcCCCCceE
Confidence            887544 5678887653210 01122334455566666666665433         469999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCC--EEEEEcChHHHhhc
Q 020527          240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG--RIIEVGNHAELLHK  309 (325)
Q Consensus       240 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G--~i~~~g~~~~l~~~  309 (325)
                      +.|||.+-||.+.+...-..++++-=  ..++|-.+|.||.-.+.. +|||++.+.-  .....-+|..++..
T Consensus       479 liDEpsAylDSeQRi~AskvikRfil--hakktafvVEhdfImaTYladrvivf~G~ps~~~~a~~p~~Ll~g  549 (592)
T KOG0063|consen  479 LIDEPSAYLDSEQRIIASKVIKRFIL--HAKKTAFVVEHDFIMATYLADRVIVFEGQPSVNTVANSPQSLLAG  549 (592)
T ss_pred             EecCchhhcChHHHHHHHHHHHHHHH--hccchhhhhhhHHHHHHhhcceeEEEecCcccccccCChhHHHHH
Confidence            99999999999998877777777643  246799999999988876 9999999742  22333455555544

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=99.79  E-value=4.3e-19  Score=156.71  Aligned_cols=139  Identities=19%  Similarity=0.235  Sum_probs=98.9

Q ss_pred             CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHH
Q 020527           95 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIK  173 (325)
Q Consensus        95 ~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~  173 (325)
                      ..+.+|++|++++|++++|+||||+||||++++++++.                     +..++|+-.  |..+ ..++.
T Consensus        16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~---------------------~la~~G~~v--pa~~~~l~~~   72 (204)
T cd03282          16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA---------------------IMAQIGCFV--PAEYATLPIF   72 (204)
T ss_pred             cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH---------------------HHHHcCCCc--chhhcCccCh
Confidence            36899999999999999999999999999999999874                     122333211  2222 45777


Q ss_pred             HHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHH
Q 020527          174 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE  253 (325)
Q Consensus       174 enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~  253 (325)
                      |+|......   .+...                      .+.+.+|+|++|+ ..+-+++.+|+++|+|||++|+|+...
T Consensus        73 d~I~~~~~~---~d~~~----------------------~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~  126 (204)
T cd03282          73 NRLLSRLSN---DDSME----------------------RNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADG  126 (204)
T ss_pred             hheeEecCC---ccccc----------------------hhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHH
Confidence            777542110   00000                      0013589999976 455668899999999999999999765


Q ss_pred             HHH-HHHHHHhhccCCCCeEEEEEecCchHHHh
Q 020527          254 HYV-KGVLHALRNDCKTKRTVIVIAHRLSTIKA  285 (325)
Q Consensus       254 ~~i-~~~l~~l~~~~~~g~tvi~vtH~~~~~~~  285 (325)
                      ..+ ..+++.+.+   .+.++|++||+.+.+..
T Consensus       127 ~~l~~~il~~l~~---~~~~~i~~TH~~~l~~~  156 (204)
T cd03282         127 FAISLAILECLIK---KESTVFFATHFRDIAAI  156 (204)
T ss_pred             HHHHHHHHHHHHh---cCCEEEEECChHHHHHH
Confidence            554 455666654   37899999999998765

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=99.77  E-value=2.9e-18  Score=157.27  Aligned_cols=142  Identities=21%  Similarity=0.289  Sum_probs=102.9

Q ss_pred             cEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCC-HHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHH
Q 020527          109 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNE  187 (325)
Q Consensus       109 e~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~-~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~  187 (325)
                      ..++|+||||||||||+++|+|+++|++|+|.++|+++...+ ..++...++++||+......+|.||..        + 
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~--------k-  182 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCP--------K-  182 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccch--------H-
Confidence            578999999999999999999999999999999999987553 456667788999965322445554410        0 


Q ss_pred             HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccC
Q 020527          188 DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC  267 (325)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~  267 (325)
                                                     ..|   ..+++|+  .+|+++|+|||++      .+.+..+++.+.   
T Consensus       183 -------------------------------~~~---~~~~i~~--~~P~villDE~~~------~e~~~~l~~~~~---  217 (270)
T TIGR02858       183 -------------------------------AEG---MMMLIRS--MSPDVIVVDEIGR------EEDVEALLEALH---  217 (270)
T ss_pred             -------------------------------HHH---HHHHHHh--CCCCEEEEeCCCc------HHHHHHHHHHHh---
Confidence                                           011   1333344  5999999999974      233455555553   


Q ss_pred             CCCeEEEEEecCchH--H------------HhcCEEEEEeCCEEEEEcChHHHh
Q 020527          268 KTKRTVIVIAHRLST--I------------KAVDRIVVIDDGRIIEVGNHAELL  307 (325)
Q Consensus       268 ~~g~tvi~vtH~~~~--~------------~~~d~v~~l~~G~i~~~g~~~~l~  307 (325)
                       .|.++|++||+.+.  +            ..+||+++|++|+  ..|++++++
T Consensus       218 -~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i~  268 (270)
T TIGR02858       218 -AGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAVY  268 (270)
T ss_pred             -CCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeecc
Confidence             48899999998765  3            2279999999886  667766654

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=99.77  E-value=1.4e-18  Score=154.89  Aligned_cols=155  Identities=17%  Similarity=0.209  Sum_probs=102.5

Q ss_pred             CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHH
Q 020527           96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKS  174 (325)
Q Consensus        96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~e  174 (325)
                      .+.+|++++.++ ++++|+|||||||||++|+++++.-..  +   .|..+   +.  .+..+++++|   +| ..++.|
T Consensus        19 ~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~--~---~g~~v---p~--~~~~i~~~~~---i~~~~~~~~   84 (216)
T cd03284          19 FVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLA--Q---IGSFV---PA--SKAEIGVVDR---IFTRIGASD   84 (216)
T ss_pred             eEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHh--c---cCCee---cc--ccceecceee---EeccCCchh
Confidence            588999999887 999999999999999999998754221  1   11111   11  1345777754   34 456666


Q ss_pred             HHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH--cCCCCEEEEeCC---CCCCC
Q 020527          175 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI--LRDPAILLLDEA---TSALD  249 (325)
Q Consensus       175 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral--~~~p~llllDEP---ts~LD  249 (325)
                      |+..+.                                      |.=...+..+++++  +.+|+++|+|||   |+++|
T Consensus        85 ~ls~g~--------------------------------------s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD  126 (216)
T cd03284          85 DLAGGR--------------------------------------STFMVEMVETANILNNATERSLVLLDEIGRGTSTYD  126 (216)
T ss_pred             hhccCc--------------------------------------chHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHH
Confidence            665441                                      11122223344333  579999999999   99999


Q ss_pred             HHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHH
Q 020527          250 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAEL  306 (325)
Q Consensus       250 ~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l  306 (325)
                      ....  ...+++.+.+.  .+.++|++||+.+....+|++..+.+|++...++.+++
T Consensus       127 ~~~~--~~~il~~l~~~--~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l  179 (216)
T cd03284         127 GLSI--AWAIVEYLHEK--IGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGV  179 (216)
T ss_pred             HHHH--HHHHHHHHHhc--cCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence            8652  23344444431  26799999999876667888777788887766655554

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=99.72  E-value=7.3e-18  Score=132.77  Aligned_cols=76  Identities=22%  Similarity=0.177  Sum_probs=69.2

Q ss_pred             CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHH
Q 020527           96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSN  175 (325)
Q Consensus        96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~en  175 (325)
                      .+|+++||++++|++++|+||||||||||++++.      +|++.++|.++..++....++.++++||+  +|..|++||
T Consensus         3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~N   74 (107)
T cd00820           3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRLN   74 (107)
T ss_pred             eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHhh
Confidence            5899999999999999999999999999999986      89999999999887777777778888888  889999999


Q ss_pred             HhcC
Q 020527          176 IMYG  179 (325)
Q Consensus       176 l~~~  179 (325)
                      |.+.
T Consensus        75 i~~~   78 (107)
T cd00820          75 IFLI   78 (107)
T ss_pred             ceee
Confidence            9763

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=99.70  E-value=1.2e-17  Score=151.53  Aligned_cols=190  Identities=19%  Similarity=0.261  Sum_probs=116.6

Q ss_pred             EEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeE--EECCEeCCCCCHHHHhcce---EEEc--cCCcCccc-----
Q 020527          103 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI--YIDGFPLTDLDIRWLREKI---GFVG--QEPQLLQM-----  170 (325)
Q Consensus       103 l~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I--~i~g~~i~~~~~~~~r~~i---~~v~--Q~~~l~~~-----  170 (325)
                      +.+.+||.++|+||+|+|||||++.+++......+++  ++....-...+..++.+.+   -++.  +.|.....     
T Consensus        11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~   90 (249)
T cd01128          11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEM   90 (249)
T ss_pred             cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHH
Confidence            4789999999999999999999999999887654433  2221111113344433332   1111  11111000     


Q ss_pred             --cHHHHHh-cCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHH--------HHHHHHHHHHcCCCC
Q 020527          171 --DIKSNIM-YGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQ--------KQRIAIARAILRDPA  237 (325)
Q Consensus       171 --tv~enl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq--------~QRv~iAral~~~p~  237 (325)
                        +..++.. .|..             ..-+-+-+.+++.+++....  +..+|||+        +||+++||++..+++
T Consensus        91 ~~~~a~~~~~~G~~-------------vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gs  157 (249)
T cd01128          91 VLEKAKRLVEHGKD-------------VVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGS  157 (249)
T ss_pred             HHHHHHHHHHCCCC-------------EEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCc
Confidence              1111110 0000             00000112233333333332  34689999        999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHH-HHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHH
Q 020527          238 ILLLDEATSALDSESEHY-VKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKL  316 (325)
Q Consensus       238 llllDEPts~LD~~~~~~-i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~  316 (325)
                      |++|  ||+.+|+.+... +.  +.+++.   .+.|.|++||++.....+|.|.+|+.|++     +++++..++.|+.+
T Consensus       158 It~l--~T~~~d~~~~~~~~i--~~~~~~---~~~~~ivls~~la~~~~~paI~vl~s~sr-----~~~ll~~~~~~~~~  225 (249)
T cd01128         158 LTII--ATALVDTGSRMDDVI--FEEFKG---TGNMELVLDRRLAERRIFPAIDILKSGTR-----KEELLLDPEELQRM  225 (249)
T ss_pred             eEEe--eeheecCCCcccchH--HHHHhc---CCCcEEEEchHHhhCCCCCeEEEcCCCCc-----cchhhCCHHHHHHH
Confidence            9999  999999755543 33  444432   36799999999999999999999999997     45555545455554


Q ss_pred             H
Q 020527          317 V  317 (325)
Q Consensus       317 ~  317 (325)
                      +
T Consensus       226 ~  226 (249)
T cd01128         226 W  226 (249)
T ss_pred             H
Confidence            3

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=99.69  E-value=2.7e-16  Score=139.89  Aligned_cols=135  Identities=18%  Similarity=0.221  Sum_probs=92.5

Q ss_pred             ceeeeeEEeeCC--cEEEEEcCCCChHHHHHHHHHc--CCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc--cc
Q 020527           97 ILNHVCLTIEAN--EVVAIVGLSGSGKSTFVNLLLR--LYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL--QM  170 (325)
Q Consensus        97 iL~~isl~i~~G--e~~~iiG~nGsGKSTLl~~l~g--l~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~--~~  170 (325)
                      +-+|+++  .++  .+++|+||||+|||||||.++.  ++ +..|......           ...++|..|...-+  ..
T Consensus        18 vpnd~~l--~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-----------~~~~~~~d~i~~~l~~~~   83 (213)
T cd03281          18 VPNDTEI--GGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-----------SATIGLVDKIFTRMSSRE   83 (213)
T ss_pred             EcceEEe--cCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-----------CcEEeeeeeeeeeeCCcc
Confidence            4455555  444  7899999999999999999984  33 5667654421           12477777754322  11


Q ss_pred             cHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCH
Q 020527          171 DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS  250 (325)
Q Consensus       171 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~  250 (325)
                      ++.+++                      ..+                  .-+.||+++|++++.+|+++|+|||++|+|+
T Consensus        84 si~~~~----------------------S~f------------------~~el~~l~~~l~~~~~~slvllDE~~~gtd~  123 (213)
T cd03281          84 SVSSGQ----------------------SAF------------------MIDLYQVSKALRLATRRSLVLIDEFGKGTDT  123 (213)
T ss_pred             Chhhcc----------------------chH------------------HHHHHHHHHHHHhCCCCcEEEeccccCCCCH
Confidence            222111                      000                  3456999999999999999999999999999


Q ss_pred             HHH-HHHHHHHHHhhccCCCCeEEEEEecCchHHHh
Q 020527          251 ESE-HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA  285 (325)
Q Consensus       251 ~~~-~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~  285 (325)
                      ... ..+..+++.+.+....+.++|++||+.+.+..
T Consensus       124 ~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~  159 (213)
T cd03281         124 EDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNR  159 (213)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHh
Confidence            754 44456788875421123589999999998764

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK00064 recF recombination protein F; Reviewed

Probab=99.68  E-value=9.7e-16  Score=146.71  Aligned_cols=75  Identities=25%  Similarity=0.395  Sum_probs=65.0

Q ss_pred             CCChHHHHHHHHHHHHc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh--
Q 020527          217 LLSGGQKQRIAIARAIL---------RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--  285 (325)
Q Consensus       217 ~LSgGq~QRv~iAral~---------~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~--  285 (325)
                      .+|.||+|+++||++|+         .+|+|+|+|||+++||+..+..+.+.+.++      +..++++||+.+.+..  
T Consensus       273 ~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~------~~qv~it~~~~~~~~~~~  346 (361)
T PRK00064        273 FGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL------GAQVFITTTDLEDLADLL  346 (361)
T ss_pred             hCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc------CCEEEEEcCChhhhhhhh
Confidence            49999999999999986         799999999999999999999998888654      3478999999876643  


Q ss_pred             -cCEEEEEeCCEE
Q 020527          286 -VDRIVVIDDGRI  297 (325)
Q Consensus       286 -~d~v~~l~~G~i  297 (325)
                       .++++.+++|++
T Consensus       347 ~~~~i~~v~~G~i  359 (361)
T PRK00064        347 ENAKIFHVEQGKI  359 (361)
T ss_pred             ccCcEEEEeCCEE
Confidence             358999999987

>TIGR01069 mutS2 MutS2 family protein

Probab=99.64  E-value=2e-15  Score=156.53  Aligned_cols=152  Identities=18%  Similarity=0.211  Sum_probs=99.7

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCC-cEEEEEcCCCChHHHHHHHHHcC-CCCCCCeEEECCEeCCCCCHHHHhc
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEAN-EVVAIVGLSGSGKSTFVNLLLRL-YEPSDGQIYIDGFPLTDLDIRWLRE  156 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~G-e~~~iiG~nGsGKSTLl~~l~gl-~~~~~G~I~i~g~~i~~~~~~~~r~  156 (325)
                      .+.++++...+-..   .-.-.+|+++.++ ++++|+||||+|||||||+++|. +.+..|-                  
T Consensus       295 ~i~l~~~rhPll~~---~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~------------------  353 (771)
T TIGR01069       295 KIILENARHPLLKE---PKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI------------------  353 (771)
T ss_pred             CEEEccccCceecC---CceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC------------------
Confidence            46777665422110   0122478888877 89999999999999999999987 3344441                  


Q ss_pred             ceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 020527          157 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP  236 (325)
Q Consensus       157 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p  236 (325)
                         +||..... ...+.+++...    ...+.           ...+.          ...+|+|++|++.+++++ .+|
T Consensus       354 ---~Vpa~~~~-~~~~~d~i~~~----i~~~~-----------si~~~----------LStfS~~m~~~~~il~~~-~~~  403 (771)
T TIGR01069       354 ---PIPANEHS-EIPYFEEIFAD----IGDEQ-----------SIEQN----------LSTFSGHMKNISAILSKT-TEN  403 (771)
T ss_pred             ---CccCCccc-cccchhheeee----cChHh-----------HHhhh----------hhHHHHHHHHHHHHHHhc-CCC
Confidence               33332210 01112222110    00100           00111          035899999999999887 789


Q ss_pred             CEEEEeCCCCCCCHHHHHHH-HHHHHHhhccCCCCeEEEEEecCchHHH
Q 020527          237 AILLLDEATSALDSESEHYV-KGVLHALRNDCKTKRTVIVIAHRLSTIK  284 (325)
Q Consensus       237 ~llllDEPts~LD~~~~~~i-~~~l~~l~~~~~~g~tvi~vtH~~~~~~  284 (325)
                      +++|+|||++|+|+.....+ ..++..+.+   .|.++|++||+.+...
T Consensus       404 sLvLlDE~g~GtD~~eg~ala~aiLe~l~~---~g~~viitTH~~eL~~  449 (771)
T TIGR01069       404 SLVLFDELGAGTDPDEGSALAISILEYLLK---QNAQVLITTHYKELKA  449 (771)
T ss_pred             cEEEecCCCCCCCHHHHHHHHHHHHHHHHh---cCCEEEEECChHHHHH
Confidence            99999999999999999888 467777754   4789999999988643

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=99.64  E-value=2.4e-16  Score=137.24  Aligned_cols=70  Identities=17%  Similarity=0.175  Sum_probs=50.9

Q ss_pred             CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHH-HHHHHhhccCCCCeEEEEEecCchHHHhcCE
Q 020527          216 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK-GVLHALRNDCKTKRTVIVIAHRLSTIKAVDR  288 (325)
Q Consensus       216 ~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~-~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~  288 (325)
                      +.+|+|++|...+++. +.+|+++|+|||++++|+.....+. .+++.+.++  .+.++|++||+++....||+
T Consensus        60 s~fs~~~~~l~~~l~~-~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~--~~~~iii~TH~~~l~~~~~~  130 (185)
T smart00534       60 STFMVEMKETANILKN-ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEK--IGALTLFATHYHELTKLADE  130 (185)
T ss_pred             cHHHHHHHHHHHHHHh-CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhc--CCCeEEEEecHHHHHHHhhc
Confidence            3478887774333332 3499999999999999999777664 556666531  36799999999976666764

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=99.62  E-value=1.2e-15  Score=136.14  Aligned_cols=72  Identities=26%  Similarity=0.516  Sum_probs=56.7

Q ss_pred             CCChHHHHHHHHHHHH----cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEE
Q 020527          217 LLSGGQKQRIAIARAI----LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI  292 (325)
Q Consensus       217 ~LSgGq~QRv~iAral----~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l  292 (325)
                      .||||||.+++||--|    ..+++++|||||.++||...+..+.++|.++.+    +.-+|++||+...+..||+.+.+
T Consensus       136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~----~~Q~ii~Th~~~~~~~a~~~~~v  211 (220)
T PF02463_consen  136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK----QSQFIITTHNPEMFEDADKLIGV  211 (220)
T ss_dssp             GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT----TSEEEEE-S-HHHHTT-SEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccc----ccccccccccccccccccccccc
Confidence            6999999999998655    468899999999999999999999999998853    45799999999999999987655

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=99.59  E-value=4.6e-14  Score=137.46  Aligned_cols=171  Identities=22%  Similarity=0.262  Sum_probs=118.1

Q ss_pred             CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEe---CCC-----CCHHHHhcceEEEccCCc
Q 020527           95 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP---LTD-----LDIRWLREKIGFVGQEPQ  166 (325)
Q Consensus        95 ~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~---i~~-----~~~~~~r~~i~~v~Q~~~  166 (325)
                      ..+++++ |.+.+|++++|+|+||+|||||+++|+|+.+|+.|.|.+.|++   +.+     ++...+++.|.++.+...
T Consensus       146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~  224 (438)
T PRK07721        146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQ  224 (438)
T ss_pred             hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCC
Confidence            3589999 9999999999999999999999999999999999999996544   332     233446778898875431


Q ss_pred             --Cc-------cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCC-hHHHHH-HHHHHHHcCC
Q 020527          167 --LL-------QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLS-GGQKQR-IAIARAILRD  235 (325)
Q Consensus       167 --l~-------~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LS-gGq~QR-v~iAral~~~  235 (325)
                        +.       ..|+.|+.+                          .  .|.+..+-..+|+ --|-|| +++   .+.+
T Consensus       225 ~~~~r~~~~~~a~~iAEyfr--------------------------~--~g~~Vll~~Dsltr~A~A~rEisl---~~ge  273 (438)
T PRK07721        225 PALMRIKGAYTATAIAEYFR--------------------------D--QGLNVMLMMDSVTRVAMAQREIGL---AVGE  273 (438)
T ss_pred             CHHHHHHHHHHHHHHHHHHH--------------------------H--CCCcEEEEEeChHHHHHHHHHHHH---hcCC
Confidence              11       112222221                          1  1222111112222 112222 111   1244


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCe-----EEEEEecCchHHHhcCEEEEEeCCEEEEEcChHH
Q 020527          236 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR-----TVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAE  305 (325)
Q Consensus       236 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~-----tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~  305 (325)
                      |+      .|+|+||.....+.++++++.+. ..|.     ||++.+||++. ..||++..+.+|+|+.+++..+
T Consensus       274 ~P------~~~G~dp~~~~~l~~ller~~~~-~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la~  340 (438)
T PRK07721        274 PP------TTKGYTPSVFAILPKLLERTGTN-ASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQLAN  340 (438)
T ss_pred             CC------ccccCCHHHHHHHHHHHHHhcCC-CCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccHHH
Confidence            54      57899999999999999998642 2575     99999999985 5699999999999999887643

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=99.57  E-value=2.3e-15  Score=141.97  Aligned_cols=172  Identities=25%  Similarity=0.329  Sum_probs=113.4

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCC----CCHHHHhc--------------ceEEEccCCcC
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD----LDIRWLRE--------------KIGFVGQEPQL  167 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~----~~~~~~r~--------------~i~~v~Q~~~l  167 (325)
                      ++|+..+++|.||-||||-+++++|-++|.-|.-- ++-+..+    ....++..              +..||.|-|..
T Consensus        98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~-~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~  176 (592)
T KOG0063|consen   98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYD-NPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRA  176 (592)
T ss_pred             CcchhccccccCcccHHHHHHHHhCCCCCCCCCCC-CCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHH
Confidence            67999999999999999999999999999877431 1111110    00000000              01111111111


Q ss_pred             ccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCC
Q 020527          168 LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSA  247 (325)
Q Consensus       168 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~  247 (325)
                      ..++|.+++.--    .......++.+...+...+++         ...+||||+-||.+||.+.++++++.++|||.+.
T Consensus       177 ~k~~v~~~l~~~----~~r~~~~~~~~~~~L~~~~~r---------e~~~lsggelqrfaia~~~vq~advyMFDEpSsY  243 (592)
T KOG0063|consen  177 VKGTVGSLLDRK----DERDNKEEVCDQLDLNNLLDR---------EVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSY  243 (592)
T ss_pred             HHHHHHHHHHHH----hhcccHHHHHHHHHHhhHHHh---------hhhhcccchhhhhhhhhhhhhhcceeEecCCccc
Confidence            123444433211    001112223333333333332         1256999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeC
Q 020527          248 LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD  294 (325)
Q Consensus       248 LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~  294 (325)
                      ||.+.+.+--..++.+..   ...-||+|.||++.+.. .|-+.++..
T Consensus       244 LDVKQRLkaA~~IRsl~~---p~~YiIVVEHDLsVLDylSDFiCcLYG  288 (592)
T KOG0063|consen  244 LDVKQRLKAAITIRSLIN---PDRYIIVVEHDLSVLDYLSDFICCLYG  288 (592)
T ss_pred             chHHHhhhHHHHHHHhhC---CCCeEEEEEeechHHHhhhcceeEEec
Confidence            999999888888888864   35689999999999976 888888863

>TIGR00606 rad50 rad50

Probab=99.56  E-value=2.2e-14  Score=157.39  Aligned_cols=122  Identities=21%  Similarity=0.249  Sum_probs=96.4

Q ss_pred             CccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC-CCCCChHHHH------HHHHHHHHcCCCCEE
Q 020527          167 LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD-DDLLSGGQKQ------RIAIARAILRDPAIL  239 (325)
Q Consensus       167 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~LSgGq~Q------Rv~iAral~~~p~ll  239 (325)
                      .|.+|+.|||.+ .+ ..+++  ..+....+...++..++.| ++..+ ...|||||||      |++||||++.+|++|
T Consensus      1153 ~~~~~~~~~i~~-~~-~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il 1227 (1311)
T TIGR00606      1153 TYRGQDIEYIEI-RS-DADEN--VSASDKRRNYNYRVVMLKG-DTALDMRGRCSAGQKVLASLIIRLALAETFCLNCGII 1227 (1311)
T ss_pred             HcCccHHHHhhc-CC-CCChH--HHHHHHcCchHHHhccCCC-CeecCCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEE
Confidence            378999999998 33 33333  4566777888888888877 55554 3689999999      999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHhhccC--CCCeEEEEEecCchHHHh------cCEEEEEe
Q 020527          240 LLDEATSALDSESEHYVKGVLHALRNDC--KTKRTVIVIAHRLSTIKA------VDRIVVID  293 (325)
Q Consensus       240 llDEPts~LD~~~~~~i~~~l~~l~~~~--~~g~tvi~vtH~~~~~~~------~d~v~~l~  293 (325)
                      +|||||++||+.+...+.+.|..+...+  ..|.+||+||||++++..      |++.+-+.
T Consensus      1228 ~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~~ 1289 (1311)
T TIGR00606      1228 ALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRLK 1289 (1311)
T ss_pred             EeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeeee
Confidence            9999999999999999999888874211  137899999999998742      46666554

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=99.56  E-value=2.3e-14  Score=128.13  Aligned_cols=135  Identities=18%  Similarity=0.213  Sum_probs=90.3

Q ss_pred             CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHc-CCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHH
Q 020527           96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR-LYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIK  173 (325)
Q Consensus        96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~g-l~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~  173 (325)
                      .+.+|+++++++|++++|+||||+||||+++++++ .+.++.|...+.. .          -.++|..|   +| .....
T Consensus        19 ~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~----------~~~~~~~~---i~~~~~~~   84 (222)
T cd03287          19 FVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-S----------ATLSIFDS---VLTRMGAS   84 (222)
T ss_pred             EEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-c----------eEEeccce---EEEEecCc
Confidence            58999999999999999999999999999999999 6778888765432 1          12444333   22 22222


Q ss_pred             HHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCCh--HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q 020527          174 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSG--GQKQRIAIARAILRDPAILLLDEATSALDSE  251 (325)
Q Consensus       174 enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSg--Gq~QRv~iAral~~~p~llllDEPts~LD~~  251 (325)
                      |++.-+                                      +|-  .|-+|+.-+-.-+.+|+++|+|||.+|.|+.
T Consensus        85 d~~~~~--------------------------------------~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~  126 (222)
T cd03287          85 DSIQHG--------------------------------------MSTFMVELSETSHILSNCTSRSLVILDELGRGTSTH  126 (222)
T ss_pred             cccccc--------------------------------------cchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChh
Confidence            222111                                      111  1223333222335689999999998888866


Q ss_pred             HHHHH-HHHHHHhhccCCCCeEEEEEecCchHHH
Q 020527          252 SEHYV-KGVLHALRNDCKTKRTVIVIAHRLSTIK  284 (325)
Q Consensus       252 ~~~~i-~~~l~~l~~~~~~g~tvi~vtH~~~~~~  284 (325)
                      ....+ ..+++.+.+.  .+.++|++||+.+...
T Consensus       127 d~~~i~~~il~~l~~~--~~~~~i~~TH~~~l~~  158 (222)
T cd03287         127 DGIAIAYATLHYLLEE--KKCLVLFVTHYPSLGE  158 (222)
T ss_pred             hHHHHHHHHHHHHHhc--cCCeEEEEcccHHHHH
Confidence            55553 4566666542  3789999999998754

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.54  E-value=4.8e-15  Score=131.68  Aligned_cols=44  Identities=23%  Similarity=0.335  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHcCCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHhhc
Q 020527          222 QKQRIAIARAILRDPAILLLDEAT-----SALDSESEHYVKGVLHALRN  265 (325)
Q Consensus       222 q~QRv~iAral~~~p~llllDEPt-----s~LD~~~~~~i~~~l~~l~~  265 (325)
                      |++++.|||+++.+|+++++||||     ++||+.+++.+.+.++++++
T Consensus       157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~  205 (215)
T PTZ00132        157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN  205 (215)
T ss_pred             HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999     99999999999999999853

>TIGR00634 recN DNA repair protein RecN

Probab=99.53  E-value=2.4e-14  Score=144.63  Aligned_cols=76  Identities=18%  Similarity=0.334  Sum_probs=69.9

Q ss_pred             CCChHHHHHHHHHHHHcCC----CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEE
Q 020527          217 LLSGGQKQRIAIARAILRD----PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI  292 (325)
Q Consensus       217 ~LSgGq~QRv~iAral~~~----p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l  292 (325)
                      .|||||+||++|||+++..    |+++||||||+|||+.+...+.+.|.++.+    +.+||+|||++..+..||++++|
T Consensus       440 ~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~----~~~vi~iTH~~~~~~~ad~~~~l  515 (563)
T TIGR00634       440 VASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE----RHQVLCVTHLPQVAAHADAHFKV  515 (563)
T ss_pred             hcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc----CCEEEEEEChHHHHHhcCeEEEE
Confidence            5899999999999999985    699999999999999999999999999852    68999999999988889999999


Q ss_pred             eCCE
Q 020527          293 DDGR  296 (325)
Q Consensus       293 ~~G~  296 (325)
                      ++|.
T Consensus       516 ~k~~  519 (563)
T TIGR00634       516 EKEG  519 (563)
T ss_pred             EEcc
Confidence            9864

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=99.52  E-value=1.1e-13  Score=144.06  Aligned_cols=77  Identities=18%  Similarity=0.229  Sum_probs=61.5

Q ss_pred             CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHH-HHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEe
Q 020527          216 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG-VLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID  293 (325)
Q Consensus       216 ~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~-~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~  293 (325)
                      +.+|+|++|++.|++++ .+|+++|+|||++|+||.....+.. ++..+.+   .|.++|++||+.+.... +++..++ 
T Consensus       389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~---~~~~vIitTH~~el~~~~~~~~~v~-  463 (782)
T PRK00409        389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRK---RGAKIIATTHYKELKALMYNREGVE-  463 (782)
T ss_pred             hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHH---CCCEEEEECChHHHHHHHhcCCCeE-
Confidence            45899999999999999 8999999999999999998887754 5666653   47899999999888765 5554443 


Q ss_pred             CCEE
Q 020527          294 DGRI  297 (325)
Q Consensus       294 ~G~i  297 (325)
                      ++.+
T Consensus       464 ~~~~  467 (782)
T PRK00409        464 NASV  467 (782)
T ss_pred             EEEE
Confidence            3444

>PRK10869 recombination and repair protein; Provisional

Probab=99.49  E-value=9.7e-14  Score=139.56  Aligned_cols=75  Identities=20%  Similarity=0.339  Sum_probs=68.9

Q ss_pred             CChHHHHHHHHHHHHcC----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEe
Q 020527          218 LSGGQKQRIAIARAILR----DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVID  293 (325)
Q Consensus       218 LSgGq~QRv~iAral~~----~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~  293 (325)
                      |||||+||++||++++.    +|+++|||||++|||+.+...+.+.|+++.+    +.+||+|||++..+..||+++.+.
T Consensus       431 lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~----~~qvi~iTH~~~~~~~ad~~~~v~  506 (553)
T PRK10869        431 ASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE----STQVMCVTHLPQVAGCGHQHFFVS  506 (553)
T ss_pred             CCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc----CCEEEEEecCHHHHHhCCEEEEEe
Confidence            79999999999999996    6899999999999999999999999999853    579999999999888899999998


Q ss_pred             CCE
Q 020527          294 DGR  296 (325)
Q Consensus       294 ~G~  296 (325)
                      ++.
T Consensus       507 k~~  509 (553)
T PRK10869        507 KET  509 (553)
T ss_pred             ccc
Confidence            753

>PHA02562 46 endonuclease subunit; Provisional

Probab=99.47  E-value=6.6e-14  Score=141.47  Aligned_cols=77  Identities=32%  Similarity=0.498  Sum_probs=68.5

Q ss_pred             CCCChHHHHHHHHHHHHc----------CCCCEEEEeCCC-CCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH
Q 020527          216 DLLSGGQKQRIAIARAIL----------RDPAILLLDEAT-SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK  284 (325)
Q Consensus       216 ~~LSgGq~QRv~iAral~----------~~p~llllDEPt-s~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~  284 (325)
                      ..|||||+||++|||||+          .+|+++|||||| ++||+.+...+.+.|.++ +    +.|||+|||+.+...
T Consensus       467 ~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~-~----~~~iiiish~~~~~~  541 (562)
T PHA02562        467 ASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL-K----DTNVFVISHKDHDPQ  541 (562)
T ss_pred             hhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC-C----CCeEEEEECchhchh
Confidence            469999999999999987          599999999998 789999999999999887 2    679999999988777


Q ss_pred             hcCEEEEEeC-CEE
Q 020527          285 AVDRIVVIDD-GRI  297 (325)
Q Consensus       285 ~~d~v~~l~~-G~i  297 (325)
                      .||++++|.+ |+.
T Consensus       542 ~~d~~~~l~~~~~~  555 (562)
T PHA02562        542 KFDRHLKMEKVGRF  555 (562)
T ss_pred             hhhcEEEEEEECCe
Confidence            8999999986 544

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=99.44  E-value=1.6e-12  Score=116.95  Aligned_cols=158  Identities=14%  Similarity=0.240  Sum_probs=93.5

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHH-HHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTF-VNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTL-l~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      +.++++.+.+++            .+++|++++|.|+|||||||| ++++.++.++....+++....    ++.++    
T Consensus         8 ~~~~~ld~~l~g------------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~----~~~~~----   67 (230)
T PRK08533          8 LSRDELHKRLGG------------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQL----TTTEF----   67 (230)
T ss_pred             EEEeeeehhhCC------------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC----CHHHH----
Confidence            567777777654            278999999999999999999 699998876544444443211    11111    


Q ss_pred             EEEccCCcCccccHHHHH-hcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc----
Q 020527          159 GFVGQEPQLLQMDIKSNI-MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL----  233 (325)
Q Consensus       159 ~~v~Q~~~l~~~tv~enl-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~----  233 (325)
                                    .++. .+|.  .     +......-.+    .     + ... ...+|+++.++-.+++.+-    
T Consensus        68 --------------~~~~~~~g~--~-----~~~~~~~~~l----~-----~-~~~-~~~~~~~~~~~~~l~~il~~~~~  115 (230)
T PRK08533         68 --------------IKQMMSLGY--D-----INKKLISGKL----L-----Y-IPV-YPLLSGNSEKRKFLKKLMNTRRF  115 (230)
T ss_pred             --------------HHHHHHhCC--c-----hHHHhhcCcE----E-----E-EEe-cccccChHHHHHHHHHHHHHHHh
Confidence                          1111 1110  0     0000000000    0     0 000 0125666655555555443    


Q ss_pred             CCCCEEEEeCCCCCC----CHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHH--------Hh-cCEEEEEe
Q 020527          234 RDPAILLLDEATSAL----DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI--------KA-VDRIVVID  293 (325)
Q Consensus       234 ~~p~llllDEPts~L----D~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~--------~~-~d~v~~l~  293 (325)
                      .+|+++++||||+++    |+...+.+.+.++.+++   .|.|+ ++||+....        .. ||-|+.|+
T Consensus       116 ~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~---~g~tv-i~t~~~~~~~~~~~~~~~~~~DgvI~L~  184 (230)
T PRK08533        116 YEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISS---LNKVI-ILTANPKELDESVLTILRTAATMLIRLE  184 (230)
T ss_pred             cCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHh---CCCEE-EEEecccccccccceeEEEeeeEEEEEE
Confidence            369999999999999    88878888998888864   36655 556665432        22 67788776

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.44  E-value=8.8e-13  Score=133.04  Aligned_cols=111  Identities=34%  Similarity=0.501  Sum_probs=96.3

Q ss_pred             HHHHhCCCCcccccCC-CCCChHHHHHHHHHHHHcCC--CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEE
Q 020527          200 EFILSLPCGYETLVDD-DLLSGGQKQRIAIARAILRD--PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVI  276 (325)
Q Consensus       200 ~~~~~~~~~~~~~~~~-~~LSgGq~QRv~iAral~~~--p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~v  276 (325)
                      .++.....+|.+.-+. ..|||||.||+-||.-+=..  -=+++||||+.||-+..-.++++.|+.++.   .|-|+|+|
T Consensus       463 ~fL~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRD---lGNTviVV  539 (935)
T COG0178         463 GFLVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRD---LGNTVIVV  539 (935)
T ss_pred             HHHHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHh---cCCeEEEE
Confidence            3566677788776654 68999999999999999764  458999999999999999999999999975   58899999


Q ss_pred             ecCchHHHhcCEEEEE------eCCEEEEEcChHHHhhcCHHH
Q 020527          277 AHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHKGRLY  313 (325)
Q Consensus       277 tH~~~~~~~~d~v~~l------~~G~i~~~g~~~~l~~~~~~~  313 (325)
                      .||.+.+..||+|+-|      +.|+|++.|+|+++++++...
T Consensus       540 EHDedti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~~Sl  582 (935)
T COG0178         540 EHDEDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLANPESL  582 (935)
T ss_pred             ecCHHHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHhCCcch
Confidence            9999999999999998      578999999999999876433

>PRK13695 putative NTPase; Provisional

Probab=99.44  E-value=1.7e-13  Score=117.96  Aligned_cols=77  Identities=19%  Similarity=0.270  Sum_probs=61.8

Q ss_pred             CCChHHHHHHHHHHHHcCCCCEEEEeC--CCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeC
Q 020527          217 LLSGGQKQRIAIARAILRDPAILLLDE--ATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD  294 (325)
Q Consensus       217 ~LSgGq~QRv~iAral~~~p~llllDE--Pts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~  294 (325)
                      .+||+++-++.+++..+.+|+++++||  |+..+|+..    .+.+.++.+   .+.++|+++|+-.....+|++..+.+
T Consensus        78 ~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~----~~~l~~~~~---~~~~~i~v~h~~~~~~~~~~i~~~~~  150 (174)
T PRK13695         78 NLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKF----VKAVEEVLD---SEKPVIATLHRRSVHPFVQEIKSRPG  150 (174)
T ss_pred             ehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHH----HHHHHHHHh---CCCeEEEEECchhhHHHHHHHhccCC
Confidence            489999999999999999999999999  555566544    455555442   37799999999655566999999999


Q ss_pred             CEEEEE
Q 020527          295 GRIIEV  300 (325)
Q Consensus       295 G~i~~~  300 (325)
                      |+|.+.
T Consensus       151 ~~i~~~  156 (174)
T PRK13695        151 GRVYEL  156 (174)
T ss_pred             cEEEEE
Confidence            999775

>TIGR00618 sbcc exonuclease SbcC

Probab=99.43  E-value=4.1e-13  Score=144.64  Aligned_cols=78  Identities=26%  Similarity=0.336  Sum_probs=71.2

Q ss_pred             CCCCChHHHHHHHHHHHHcC----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH
Q 020527          215 DDLLSGGQKQRIAIARAILR----------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK  284 (325)
Q Consensus       215 ~~~LSgGq~QRv~iAral~~----------~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~  284 (325)
                      ...|||||++||+||+||+.          +|++||+||||++||+.+...+++.|..+..   .|++|++|||++++..
T Consensus       948 ~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~---~g~~i~iisH~~~~~~ 1024 (1042)
T TIGR00618       948 SATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIRE---GSKMIGIISHVPEFRE 1024 (1042)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCcHHHHH
Confidence            36799999999999999985          7999999999999999999999999999974   4889999999999986


Q ss_pred             h-cCEEEEEeCC
Q 020527          285 A-VDRIVVIDDG  295 (325)
Q Consensus       285 ~-~d~v~~l~~G  295 (325)
                      . ||+|.|++.|
T Consensus      1025 ~~~~~i~v~~~~ 1036 (1042)
T TIGR00618      1025 RIPHRILVKKTN 1036 (1042)
T ss_pred             hhCCEEEEEECC
Confidence            5 9999999754

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=99.40  E-value=2.8e-12  Score=114.34  Aligned_cols=138  Identities=16%  Similarity=0.181  Sum_probs=89.0

Q ss_pred             CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCC-CCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHH
Q 020527           96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIK  173 (325)
Q Consensus        96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~-~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~  173 (325)
                      .+-+|++|++++|++++|.||||+||||+++++++..-.. .|-      .+.   .+  ..+++++   ..+| .....
T Consensus        18 ~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~------~vp---a~--~~~i~~~---~~i~~~~~~~   83 (218)
T cd03286          18 FVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGM------DVP---AK--SMRLSLV---DRIFTRIGAR   83 (218)
T ss_pred             eEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCC------ccC---cc--ccEeccc---cEEEEecCcc
Confidence            5889999999999999999999999999999998864321 121      111   00  1112222   1222 23333


Q ss_pred             HHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHH
Q 020527          174 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE  253 (325)
Q Consensus       174 enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~  253 (325)
                      |++..+...                                   + .-|-+++.-.-..+.+|+++|+|||++|+|+...
T Consensus        84 d~~~~~~St-----------------------------------F-~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg  127 (218)
T cd03286          84 DDIMKGEST-----------------------------------F-MVELSETANILRHATPDSLVILDELGRGTSTHDG  127 (218)
T ss_pred             cccccCcch-----------------------------------H-HHHHHHHHHHHHhCCCCeEEEEecccCCCCchHH
Confidence            444322100                                   0 0122333222233468999999999999999988


Q ss_pred             HHHHHH-HHHhhccCCCCeEEEEEecCchHHHh
Q 020527          254 HYVKGV-LHALRNDCKTKRTVIVIAHRLSTIKA  285 (325)
Q Consensus       254 ~~i~~~-l~~l~~~~~~g~tvi~vtH~~~~~~~  285 (325)
                      ..+... ++.+.+.  .+.++|++||+++.+..
T Consensus       128 ~~la~ail~~L~~~--~~~~~i~~TH~~el~~~  158 (218)
T cd03286         128 YAIAHAVLEYLVKK--VKCLTLFSTHYHSLCDE  158 (218)
T ss_pred             HHHHHHHHHHHHHh--cCCcEEEEeccHHHHHH
Confidence            887777 6666542  37899999999998754

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK03918 chromosome segregation protein; Provisional

Probab=99.38  E-value=1.1e-12  Score=139.19  Aligned_cols=76  Identities=25%  Similarity=0.409  Sum_probs=66.9

Q ss_pred             CCCChHHHH------HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEE
Q 020527          216 DLLSGGQKQ------RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI  289 (325)
Q Consensus       216 ~~LSgGq~Q------Rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v  289 (325)
                      ..|||||+|      |++||++++.+|+++|+||||++||+..+..+.++|..+.+   .+.+||+||||+++...||++
T Consensus       787 ~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~---~~~~iiiith~~~~~~~~d~~  863 (880)
T PRK03918        787 TFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLR---KIPQVIIVSHDEELKDAADYV  863 (880)
T ss_pred             hhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHh---cCCEEEEEECCHHHHHhCCeE
Confidence            469999999      55666788999999999999999999999999999988754   357999999999877779999


Q ss_pred             EEEeC
Q 020527          290 VVIDD  294 (325)
Q Consensus       290 ~~l~~  294 (325)
                      ++|..
T Consensus       864 ~~l~~  868 (880)
T PRK03918        864 IRVSL  868 (880)
T ss_pred             EEEEe
Confidence            99983

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=99.37  E-value=1.1e-12  Score=123.09  Aligned_cols=144  Identities=15%  Similarity=0.189  Sum_probs=99.2

Q ss_pred             eeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCC
Q 020527          101 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC  180 (325)
Q Consensus       101 isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~  180 (325)
                      +++.+++|+.++|+||+|||||||+++|++++++..|.+.+.+  ..++.... +..+.++.+..               
T Consensus       137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied--~~El~~~~-~~~~~l~~~~~---------------  198 (308)
T TIGR02788       137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED--TREIFLPH-PNYVHLFYSKG---------------  198 (308)
T ss_pred             HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC--ccccCCCC-CCEEEEEecCC---------------
Confidence            4567889999999999999999999999999999999888853  22222111 11222211100               


Q ss_pred             CCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 020527          181 PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL  260 (325)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l  260 (325)
                         . .          +      .           ...|-    .-.++.+|-.+|+++++|||.+       .+..+++
T Consensus       199 ---~-~----------~------~-----------~~~~~----~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l  236 (308)
T TIGR02788       199 ---G-Q----------G------L-----------AKVTP----KDLLQSCLRMRPDRIILGELRG-------DEAFDFI  236 (308)
T ss_pred             ---C-C----------C------c-----------CccCH----HHHHHHHhcCCCCeEEEeccCC-------HHHHHHH
Confidence               0 0          0      0           00111    2246667888999999999996       2345666


Q ss_pred             HHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHh
Q 020527          261 HALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL  307 (325)
Q Consensus       261 ~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~  307 (325)
                      +.+..   .+.+++.++|..+.....+|+..|..|++...|.+.+.+
T Consensus       237 ~a~~~---g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~  280 (308)
T TIGR02788       237 RAVNT---GHPGSITTLHAGSPEEAFEQLALMVKSSQAGLGLDFAYI  280 (308)
T ss_pred             HHHhc---CCCeEEEEEeCCCHHHHHHHHHHHhhccccccCCCHHHH
Confidence            66642   133569999999977779999999999998888888776

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>PRK01156 chromosome segregation protein; Provisional

Probab=99.36  E-value=2.7e-12  Score=136.54  Aligned_cols=78  Identities=28%  Similarity=0.441  Sum_probs=67.2

Q ss_pred             CCCCChHHHHHHHH------HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCC-eEEEEEecCchHHHhcC
Q 020527          215 DDLLSGGQKQRIAI------ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTK-RTVIVIAHRLSTIKAVD  287 (325)
Q Consensus       215 ~~~LSgGq~QRv~i------Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g-~tvi~vtH~~~~~~~~d  287 (325)
                      ...|||||++|++|      ||+++.+|++++|||||++||+.....+.+++....+. ..+ .++|+||||+..+..||
T Consensus       799 ~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~-~~~~~~ii~ish~~~~~~~~d  877 (895)
T PRK01156        799 IDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKD-SSDIPQVIMISHHRELLSVAD  877 (895)
T ss_pred             cccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEECchHHHHhcC
Confidence            35799999999975      59999999999999999999999999999998764432 123 48999999999888899


Q ss_pred             EEEEEe
Q 020527          288 RIVVID  293 (325)
Q Consensus       288 ~v~~l~  293 (325)
                      +++.+.
T Consensus       878 ~ii~~~  883 (895)
T PRK01156        878 VAYEVK  883 (895)
T ss_pred             eEEEEE
Confidence            999997

>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A

Probab=99.34  E-value=1.1e-12  Score=116.80  Aligned_cols=65  Identities=25%  Similarity=0.380  Sum_probs=52.9

Q ss_pred             CCCChHHHHHHHHHHHHcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHH
Q 020527          216 DLLSGGQKQRIAIARAILRDP---AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI  283 (325)
Q Consensus       216 ~~LSgGq~QRv~iAral~~~p---~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~  283 (325)
                      ..+|.|++|.+.|+.++...+   .++++|||-++|.|..++.+.+.|.+..+   .+.-+|++||.+..+
T Consensus       235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~---~~~QviitTHSp~il  302 (303)
T PF13304_consen  235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSK---KNIQVIITTHSPFIL  302 (303)
T ss_dssp             S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGG---GSSEEEEEES-GGG-
T ss_pred             ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCc---cCCEEEEeCccchhc
Confidence            347999999999998887766   89999999999999999999999988764   257899999998764

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=99.32  E-value=2.4e-11  Score=105.11  Aligned_cols=75  Identities=13%  Similarity=0.169  Sum_probs=61.2

Q ss_pred             CCCChHHHH------HHHHHHHHcCCCCEEEEeCCCCCCC---HHHHHHHHHHHHHhhccCCCCeEEEEEecCchH----
Q 020527          216 DLLSGGQKQ------RIAIARAILRDPAILLLDEATSALD---SESEHYVKGVLHALRNDCKTKRTVIVIAHRLST----  282 (325)
Q Consensus       216 ~~LSgGq~Q------Rv~iAral~~~p~llllDEPts~LD---~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~----  282 (325)
                      ..+|+|++|      +...+.+...+|+++++|||++.+|   ......+.+.+..+++   .|.|+|+++|+...    
T Consensus        70 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~---~g~tvi~v~~~~~~~~~~  146 (187)
T cd01124          70 DEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKR---FGVTTLLTSEQSGLEGTG  146 (187)
T ss_pred             cccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHH---CCCEEEEEeccccCCCcc
Confidence            468999998      5555555677999999999999999   7778888888888865   48899999998764    


Q ss_pred             -----HHh-cCEEEEEe
Q 020527          283 -----IKA-VDRIVVID  293 (325)
Q Consensus       283 -----~~~-~d~v~~l~  293 (325)
                           +.. ||.|+.|+
T Consensus       147 ~~~~~~~~~aD~ii~l~  163 (187)
T cd01124         147 FGGGDVEYLVDGVIRLR  163 (187)
T ss_pred             cCcCceeEeeeEEEEEE
Confidence                 444 89999987

A related protein is found in archaea.

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=99.31  E-value=1e-12  Score=127.46  Aligned_cols=67  Identities=16%  Similarity=0.203  Sum_probs=55.8

Q ss_pred             CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCC-eEEECCEeCCCCCHHHHhcceEEEccCC
Q 020527           96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QIYIDGFPLTDLDIRWLREKIGFVGQEP  165 (325)
Q Consensus        96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G-~I~i~g~~i~~~~~~~~r~~i~~v~Q~~  165 (325)
                      .+|++||+++++||+++|+|||||||||||+  +|+.+|++| +|.++|+++...+..++.. .-+|+|+.
T Consensus        20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~-LR~VFQ~f   87 (504)
T TIGR03238        20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMET-LDEIFDGF   87 (504)
T ss_pred             HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHH-HHHHHHhh
Confidence            5899999999999999999999999999999  788888888 7999999997755433211 11888864

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>COG3910 Predicted ATPase [General function prediction only]

Probab=99.28  E-value=6.1e-11  Score=101.32  Aligned_cols=79  Identities=19%  Similarity=0.246  Sum_probs=65.8

Q ss_pred             CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeC
Q 020527          216 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD  294 (325)
Q Consensus       216 ~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~  294 (325)
                      +..|.||-=---+.+.+- ..-++|||||-|+|.|.-+-.++..|+++.+   .|.-+||+||.+=.+.. --.|+.++.
T Consensus       128 h~~SHGEsf~~i~~~rf~-~~GiYiLDEPEa~LSp~RQlella~l~~la~---sGaQ~IiATHSPiLlAiP~A~I~~~~~  203 (233)
T COG3910         128 HHMSHGESFLAIFHNRFN-GQGIYILDEPEAALSPSRQLELLAILRDLAD---SGAQIIIATHSPILLAIPGAEIYEISE  203 (233)
T ss_pred             hhhccchHHHHHHHHHhc-cCceEEecCccccCCHHHHHHHHHHHHHHHh---cCCeEEEEecChhheeCCCcEEEEEec
Confidence            347999987777777765 4589999999999999999999999999975   47899999999877765 688999988


Q ss_pred             CEEE
Q 020527          295 GRII  298 (325)
Q Consensus       295 G~i~  298 (325)
                      +.+.
T Consensus       204 ~g~~  207 (233)
T COG3910         204 SGIE  207 (233)
T ss_pred             CCcc
Confidence            7653

>PRK13830 conjugal transfer protein TrbE; Provisional

Probab=99.27  E-value=3.2e-11  Score=126.70  Aligned_cols=69  Identities=20%  Similarity=0.355  Sum_probs=59.5

Q ss_pred             HcCCCCEEEEeCCCCCC-CHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH----------hcCEEEEEeCCEEEEE
Q 020527          232 ILRDPAILLLDEATSAL-DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK----------AVDRIVVIDDGRIIEV  300 (325)
Q Consensus       232 l~~~p~llllDEPts~L-D~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~----------~~d~v~~l~~G~i~~~  300 (325)
                      +..+|+++++|||+.+| |+...+.+.+.++.+++   .|.+++++||+++.+.          .|+++++|.+|++...
T Consensus       649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK---~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~  725 (818)
T PRK13830        649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRK---ANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREP  725 (818)
T ss_pred             cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCcccccc
Confidence            35799999999999999 79999999999999875   4779999999998763          5999999999998766


Q ss_pred             cCh
Q 020527          301 GNH  303 (325)
Q Consensus       301 g~~  303 (325)
                      +..
T Consensus       726 ~~~  728 (818)
T PRK13830        726 GTR  728 (818)
T ss_pred             chH
Confidence            543

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=99.27  E-value=1.4e-11  Score=132.47  Aligned_cols=78  Identities=31%  Similarity=0.308  Sum_probs=68.7

Q ss_pred             CCCCCChHHHHHHHHHHHHcC--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh
Q 020527          214 DDDLLSGGQKQRIAIARAILR--------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA  285 (325)
Q Consensus       214 ~~~~LSgGq~QRv~iAral~~--------~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~  285 (325)
                      ....|||||+++++||+||+.        +|++||+||||++||+.+...+++.|..+++   .|+||++|||......+
T Consensus       946 ~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~---~g~~v~iisH~~~l~~~ 1022 (1047)
T PRK10246        946 DTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNA---SGKTIGVISHVEAMKER 1022 (1047)
T ss_pred             CcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH---CCCEEEEEecHHHHHHh
Confidence            346799999999999999995        8999999999999999999999999999974   48999999998777766


Q ss_pred             -cCEEEEEeC
Q 020527          286 -VDRIVVIDD  294 (325)
Q Consensus       286 -~d~v~~l~~  294 (325)
                       ..+|.|-..
T Consensus      1023 i~~qi~V~k~ 1032 (1047)
T PRK10246       1023 IPVQIKVKKI 1032 (1047)
T ss_pred             ccceEEEEEC
Confidence             567777654

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=99.27  E-value=1.4e-11  Score=119.37  Aligned_cols=167  Identities=17%  Similarity=0.167  Sum_probs=114.8

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      ++-+.++..|...  ..+++++ |.+.+|++++|+|+||+|||||+++|++..+|+.|.|.+.|+.-.            
T Consensus       131 ~~r~~i~~~l~TG--iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg~------------  195 (432)
T PRK06793        131 FEREEITDVFETG--IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGR------------  195 (432)
T ss_pred             hheechhhccCCC--CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCcc------------
Confidence            5667777777542  4688885 999999999999999999999999999999999888877665421            


Q ss_pred             EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc------
Q 020527          160 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL------  233 (325)
Q Consensus       160 ~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~------  233 (325)
                                 +|.|.+..-             +...++...        --.....+-|.|+|+|++.+.+.+      
T Consensus       196 -----------ev~e~~~~~-------------l~~~gl~~t--------vvv~~tsd~s~~~r~ra~~~a~~iAEyfr~  243 (432)
T PRK06793        196 -----------EVKDFIRKE-------------LGEEGMRKS--------VVVVATSDESHLMQLRAAKLATSIAEYFRD  243 (432)
T ss_pred             -----------cHHHHHHHH-------------hhhccccee--------EEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence                       222222100             000000000        000112457999999999998887      


Q ss_pred             -CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEc
Q 020527          234 -RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG  301 (325)
Q Consensus       234 -~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g  301 (325)
                       .++-++++|+||...|+.  +++-..+.+...   .|.+..+.||-...++++.+   .++|.|....
T Consensus       244 ~G~~VLlilDslTr~a~A~--reisl~~~e~p~---~G~~~~~~s~l~~L~ERag~---~~~GSiT~~~  304 (432)
T PRK06793        244 QGNNVLLMMDSVTRFADAR--RSVDIAVKELPI---GGKTLLMESYMKKLLERSGK---TQKGSITGIY  304 (432)
T ss_pred             cCCcEEEEecchHHHHHHH--HHHHHHhcCCCC---CCeeeeeeccchhHHHHhcc---CCCcceEEEE
Confidence             789999999999999996  444445555432   37888888885445566544   3688875543

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.27  E-value=7.3e-12  Score=136.10  Aligned_cols=74  Identities=27%  Similarity=0.433  Sum_probs=65.9

Q ss_pred             CCCChHHHHHHHHHHHHc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEE
Q 020527          216 DLLSGGQKQRIAIARAIL----RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVV  291 (325)
Q Consensus       216 ~~LSgGq~QRv~iAral~----~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~  291 (325)
                      ..|||||+||++||++++    .+|+++||||||++||+.+...+.++|..+.+    +.++|+|||++..+..||+++.
T Consensus      1088 ~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~----~~~~i~~sh~~~~~~~~d~~~~ 1163 (1179)
T TIGR02168      1088 SLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK----NTQFIVITHNKGTMEVADQLYG 1163 (1179)
T ss_pred             cccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc----CCEEEEEEcChhHHHHhhhHee
Confidence            579999999999999984    67899999999999999999999999998853    4689999999998878999865


Q ss_pred             Ee
Q 020527          292 ID  293 (325)
Q Consensus       292 l~  293 (325)
                      +.
T Consensus      1164 ~~ 1165 (1179)
T TIGR02168      1164 VT 1165 (1179)
T ss_pred             ee
Confidence            53

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=99.23  E-value=7.5e-11  Score=98.73  Aligned_cols=130  Identities=18%  Similarity=0.137  Sum_probs=77.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI  189 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~  189 (325)
                      +++|.||||+||||+++.+++...+..|.+.+.+.+...   ...+                  ++.... ....     
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~---~~~~------------------~~~~~~-~~~~-----   53 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI---EELT------------------ERLIGE-SLKG-----   53 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch---HHHH------------------HHHhhh-hhcc-----
Confidence            368999999999999999999887766666554432111   1000                  000000 0000     


Q ss_pred             HHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCC----------CCHHHHHHHHHH
Q 020527          190 EWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSA----------LDSESEHYVKGV  259 (325)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~----------LD~~~~~~i~~~  259 (325)
                        ..+...   +.         .......+..+.++++.+++...+|+++++|||++-          .|....+.+.++
T Consensus        54 --~~~~~~---~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l  119 (165)
T cd01120          54 --ALDNLI---IV---------FATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELREL  119 (165)
T ss_pred             --ccccEE---EE---------EcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence              000000   00         000122355666788899999999999999999954          444555666666


Q ss_pred             HHHhhccCCCCeEEEEEecCchHH
Q 020527          260 LHALRNDCKTKRTVIVIAHRLSTI  283 (325)
Q Consensus       260 l~~l~~~~~~g~tvi~vtH~~~~~  283 (325)
                      +...++   .+.|+|+++|.....
T Consensus       120 ~~~~~~---~~~~vv~~~~~~~~~  140 (165)
T cd01120         120 LERARK---GGVTVIFTLQVPSGD  140 (165)
T ss_pred             HHHHhc---CCceEEEEEecCCcc
Confidence            555542   489999999977543

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK02224 chromosome segregation protein; Provisional

Probab=99.16  E-value=7.3e-11  Score=125.44  Aligned_cols=77  Identities=30%  Similarity=0.491  Sum_probs=67.2

Q ss_pred             CCCChHHHH------HHHHHHHHcCC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCC-eEEEEEecCchH
Q 020527          216 DLLSGGQKQ------RIAIARAILRD-----P-AILLLDEATSALDSESEHYVKGVLHALRNDCKTK-RTVIVIAHRLST  282 (325)
Q Consensus       216 ~~LSgGq~Q------Rv~iAral~~~-----p-~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g-~tvi~vtH~~~~  282 (325)
                      ..|||||||      |+++|++++.+     | +++|+||||++||+.....+.++|..+..   .| .+||+||||.+.
T Consensus       780 ~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~---~~~~qviiish~~~~  856 (880)
T PRK02224        780 EQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRR---LGVEQIVVVSHDDEL  856 (880)
T ss_pred             hhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHh---cCCCeEEEEECChHH
Confidence            579999999      99999999863     2 67999999999999999999999999863   24 479999999999


Q ss_pred             HHhcCEEEEEeCC
Q 020527          283 IKAVDRIVVIDDG  295 (325)
Q Consensus       283 ~~~~d~v~~l~~G  295 (325)
                      +..||+++.|...
T Consensus       857 ~~~ad~~~~~~~~  869 (880)
T PRK02224        857 VGAADDLVRVEKD  869 (880)
T ss_pred             HHhcCeeEEeecC
Confidence            8889999999744

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.16  E-value=7.4e-11  Score=128.41  Aligned_cols=75  Identities=21%  Similarity=0.301  Sum_probs=66.8

Q ss_pred             CCCChHHHHHHHHHHHHc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEE
Q 020527          216 DLLSGGQKQRIAIARAIL----RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVV  291 (325)
Q Consensus       216 ~~LSgGq~QRv~iAral~----~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~  291 (325)
                      ..||||||++++||++++    .+|+++|||||+++||+.+...+.++|.++.+    +.++|+|||+...+..||+++.
T Consensus      1073 ~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~----~~~~i~~t~~~~~~~~~d~~~~ 1148 (1164)
T TIGR02169      1073 EAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG----EAQFIVVSLRSPMIEYADRAIG 1148 (1164)
T ss_pred             hhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC----CCeEEEEECcHHHHHhcceeEe
Confidence            469999999999999998    47899999999999999999999999998853    4689999999988888999987


Q ss_pred             EeC
Q 020527          292 IDD  294 (325)
Q Consensus       292 l~~  294 (325)
                      +..
T Consensus      1149 ~~~ 1151 (1164)
T TIGR02169      1149 VTM 1151 (1164)
T ss_pred             EEE
Confidence            753

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=99.11  E-value=3.8e-10  Score=99.29  Aligned_cols=118  Identities=27%  Similarity=0.384  Sum_probs=72.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCCCCC-CCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHH
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED  188 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~~~~-~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~  188 (325)
                      .+.|+||+||||||+++.+++.+++. .|.|.....++. +..   ....+++.|..            .+.  .     
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E-~~~---~~~~~~i~q~~------------vg~--~-----   59 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIE-FVH---ESKRSLINQRE------------VGL--D-----   59 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcc-ccc---cCccceeeecc------------cCC--C-----
Confidence            68899999999999999999888643 567666544431 100   00111221110            000  0     


Q ss_pred             HHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCC
Q 020527          189 IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCK  268 (325)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~  268 (325)
                                       .         ..++.      +++++|..+|+++++|||.   |+++...+   ++.. .   
T Consensus        60 -----------------~---------~~~~~------~i~~aLr~~pd~ii~gEir---d~e~~~~~---l~~a-~---   97 (198)
T cd01131          60 -----------------T---------LSFEN------ALKAALRQDPDVILVGEMR---DLETIRLA---LTAA-E---   97 (198)
T ss_pred             -----------------c---------cCHHH------HHHHHhcCCcCEEEEcCCC---CHHHHHHH---HHHH-H---
Confidence                             0         01111      4889999999999999996   66554333   3322 2   


Q ss_pred             CCeEEEEEecCchHHHhcCEEEEE
Q 020527          269 TKRTVIVIAHRLSTIKAVDRIVVI  292 (325)
Q Consensus       269 ~g~tvi~vtH~~~~~~~~d~v~~l  292 (325)
                      .|..++.++|..+....+||++.|
T Consensus        98 ~G~~v~~t~Ha~~~~~~~~Rl~~l  121 (198)
T cd01131          98 TGHLVMSTLHTNSAAKTIDRIIDV  121 (198)
T ss_pred             cCCEEEEEecCCcHHHHHhHHHhh
Confidence            478899999998766556666554

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=99.10  E-value=4.8e-10  Score=101.03  Aligned_cols=73  Identities=11%  Similarity=0.166  Sum_probs=53.0

Q ss_pred             CChHHHHHHHHHHHHcC--CCCEEEEeCCCCCCC---HHHHHHHHHHHHHhhccCCCCeEEEEEecCchH-------HHh
Q 020527          218 LSGGQKQRIAIARAILR--DPAILLLDEATSALD---SESEHYVKGVLHALRNDCKTKRTVIVIAHRLST-------IKA  285 (325)
Q Consensus       218 LSgGq~QRv~iAral~~--~p~llllDEPts~LD---~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~-------~~~  285 (325)
                      .|.++.+.+..++.++.  +|+++++||||+.+|   ......+++.++.+++   ++.|+++++|+...       +..
T Consensus       101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~---~g~tvllt~~~~~~~~~~~~~~~~  177 (234)
T PRK06067        101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVD---LGKTILITLHPYAFSEELLSRIRS  177 (234)
T ss_pred             CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHh---CCCEEEEEecCCcCCHHHHHHHHh
Confidence            57788999999999987  999999999996544   4444444444555443   47899999997653       333


Q ss_pred             -cCEEEEEe
Q 020527          286 -VDRIVVID  293 (325)
Q Consensus       286 -~d~v~~l~  293 (325)
                       +|-++.|+
T Consensus       178 l~DgvI~L~  186 (234)
T PRK06067        178 ICDVYLKLR  186 (234)
T ss_pred             heEEEEEEE
Confidence             67777776

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=99.03  E-value=4.3e-10  Score=109.36  Aligned_cols=85  Identities=18%  Similarity=0.206  Sum_probs=69.7

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECC---EeCCCCCHH---
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG---FPLTDLDIR---  152 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g---~~i~~~~~~---  152 (325)
                      .++.+++++.|...  ..+++.++ .|.+||+++|+||||||||||+++|+++.+|+.|.|.+.|   .++..+...   
T Consensus       139 ~~~r~~v~~~l~TG--i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~  215 (450)
T PRK06002        139 AMTRARVETGLRTG--VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLA  215 (450)
T ss_pred             CeEeecceEEcCCC--cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHH
Confidence            48999999999643  57999996 9999999999999999999999999999999999998864   555443322   


Q ss_pred             -HHhcceEEEccCCc
Q 020527          153 -WLREKIGFVGQEPQ  166 (325)
Q Consensus       153 -~~r~~i~~v~Q~~~  166 (325)
                       .+++.|+|++|...
T Consensus       216 ~~r~rtI~vV~qsd~  230 (450)
T PRK06002        216 DNLKKAVAVVATSDE  230 (450)
T ss_pred             HhhCCeEEEEEcCCC
Confidence             23467999999753

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=99.01  E-value=1.9e-08  Score=80.94  Aligned_cols=119  Identities=35%  Similarity=0.437  Sum_probs=78.7

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHcCCCCCC-CeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCC
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVK  185 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~-G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~  185 (325)
                      ++..+.|+||+|+||||+++.++..+.... +-+.++.............                              
T Consensus         1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------   50 (148)
T smart00382        1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------------------------------   50 (148)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------------------------------
Confidence            367899999999999999999999887654 4555554433221111100                              


Q ss_pred             HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHH-----H
Q 020527          186 NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV-----L  260 (325)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~-----l  260 (325)
                                   .......         ....++++..+..+++|-..+|.++++||+..-.+..........     .
T Consensus        51 -------------~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~  108 (148)
T smart00382       51 -------------LIIVGGK---------KASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLL  108 (148)
T ss_pred             -------------hhhhhcc---------CCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHH
Confidence                         0000000         023678888888899888888999999999999999877655431     1


Q ss_pred             HHhhccCCCCeEEEEEecC
Q 020527          261 HALRNDCKTKRTVIVIAHR  279 (325)
Q Consensus       261 ~~l~~~~~~g~tvi~vtH~  279 (325)
                      .....  ..+..+|.++|.
T Consensus       109 ~~~~~--~~~~~~i~~~~~  125 (148)
T smart00382      109 LLLKS--EKNLTVILTTND  125 (148)
T ss_pred             HHHHh--cCCCEEEEEeCC
Confidence            22211  246788888884

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=98.99  E-value=4.1e-11  Score=119.15  Aligned_cols=157  Identities=11%  Similarity=0.152  Sum_probs=98.4

Q ss_pred             EeeCCcEEEEEcCCCChHHHHHHHH--HcCCCCCCCeEEECCEeCCCCCHHHH---hcceEEEccCCcCccccHHHHHhc
Q 020527          104 TIEANEVVAIVGLSGSGKSTFVNLL--LRLYEPSDGQIYIDGFPLTDLDIRWL---REKIGFVGQEPQLLQMDIKSNIMY  178 (325)
Q Consensus       104 ~i~~Ge~~~iiG~nGsGKSTLl~~l--~gl~~~~~G~I~i~g~~i~~~~~~~~---r~~i~~v~Q~~~l~~~tv~enl~~  178 (325)
                      -+++|..+.|.||+|||||||..-+  .|..++.+.-+++....    ++.++   .+.+||-+++..- .    +++.+
T Consensus        17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE----~~~~l~~~~~~~G~~~~~~~~-~----g~l~~   87 (484)
T TIGR02655        17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE----SPQDIIKNARSFGWDLQKLVD-E----GKLFI   87 (484)
T ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec----CHHHHHHHHHHcCCCHHHHhh-c----CceEE
Confidence            3789999999999999999999765  46665556667776532    23332   3456766654310 0    00110


Q ss_pred             CCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH--HHHcCCCCEEEEeCCCCCCCHHHHHHH
Q 020527          179 GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA--RAILRDPAILLLDEATSALDSESEHYV  256 (325)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA--ral~~~p~llllDEPts~LD~~~~~~i  256 (325)
                      -...  .........+..++.+++++..         ..+|+|++|||.|+  .++...|+..          ...++.+
T Consensus        88 ~~~~--~~~~~~~~~~~~~l~~~l~~i~---------~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l  146 (484)
T TIGR02655        88 LDAS--PDPEGQDVVGGFDLSALIERIN---------YAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREI  146 (484)
T ss_pred             EecC--chhccccccccCCHHHHHHHHH---------HHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHH
Confidence            0000  0000011223334445554443         35899999999999  6666665543          4677788


Q ss_pred             HHHHHHhhccCCCCeEEEEEecCchH--------H-Hh-cCEEEEEe
Q 020527          257 KGVLHALRNDCKTKRTVIVIAHRLST--------I-KA-VDRIVVID  293 (325)
Q Consensus       257 ~~~l~~l~~~~~~g~tvi~vtH~~~~--------~-~~-~d~v~~l~  293 (325)
                      .++++.+++   .|+|+|+++|+.+.        + +. ||.|+.|+
T Consensus       147 ~~Li~~L~~---~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~  190 (484)
T TIGR02655       147 FRLVARLKQ---IGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR  190 (484)
T ss_pred             HHHHHHHHH---CCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence            888888864   48999999998764        2 43 89999887

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=98.93  E-value=7.7e-10  Score=107.48  Aligned_cols=82  Identities=18%  Similarity=0.181  Sum_probs=63.1

Q ss_pred             CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCC---eEEECCEeCCCCCHHH------HhcceEEEccCC
Q 020527           95 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG---QIYIDGFPLTDLDIRW------LREKIGFVGQEP  165 (325)
Q Consensus        95 ~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G---~I~i~g~~i~~~~~~~------~r~~i~~v~Q~~  165 (325)
                      ..+++++ |++.+|++++|+|+||||||||+++|+|+.+++.+   .|-.++.++.++....      .|..+++++|+.
T Consensus       143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~  221 (434)
T PRK07196        143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE  221 (434)
T ss_pred             eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence            4699999 99999999999999999999999999999998864   3333444443322121      245699999998


Q ss_pred             cCc-cccHHHHHh
Q 020527          166 QLL-QMDIKSNIM  177 (325)
Q Consensus       166 ~l~-~~tv~enl~  177 (325)
                      ..+ ..++.+++.
T Consensus       222 s~~~rl~a~e~a~  234 (434)
T PRK07196        222 SPLMRIKATELCH  234 (434)
T ss_pred             ChhhhHHHHHHHH
Confidence            776 678888864

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=98.92  E-value=9.9e-09  Score=100.37  Aligned_cols=177  Identities=21%  Similarity=0.216  Sum_probs=106.5

Q ss_pred             CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCH---H-----HHhcceEEEccCCc
Q 020527           95 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI---R-----WLREKIGFVGQEPQ  166 (325)
Q Consensus        95 ~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~---~-----~~r~~i~~v~Q~~~  166 (325)
                      ..+++++ |.+.+|++++|+|+||+|||||+++|+++.+++.|.+...|..-.+...   .     .+++.+-++.+...
T Consensus       151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~  229 (440)
T TIGR01026       151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQ  229 (440)
T ss_pred             eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCC
Confidence            4699999 9999999999999999999999999999999998887776654333210   0     01122222222110


Q ss_pred             CccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCCh-HHHHHHHHHHHHcCCCCEEEEeCC-
Q 020527          167 LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSG-GQKQRIAIARAILRDPAILLLDEA-  244 (325)
Q Consensus       167 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSg-Gq~QRv~iAral~~~p~llllDEP-  244 (325)
                          +.             ..+...+.-...+.+....  .|.+..+-..+|+- -|-+| .++         +.+.|| 
T Consensus       230 ----~p-------------~~r~~~~~~a~t~AE~frd--~G~~Vll~~DslTr~A~A~R-Eis---------l~~ge~P  280 (440)
T TIGR01026       230 ----SP-------------LLRLKGAYVATAIAEYFRD--QGKDVLLLMDSVTRFAMAQR-EIG---------LAAGEPP  280 (440)
T ss_pred             ----CH-------------HHHHHHHHHHHHHHHHHHH--CCCCEEEEEeChHHHHHHHH-HHH---------HhcCCCC
Confidence                00             1111111111112222221  13322222233432 22233 222         123443 


Q ss_pred             -CCCCCHHHHHHHHHHHHHhhccCCCCe-------EEEEEecCchHHHhcCEEEEEeCCEEEEEcChHH
Q 020527          245 -TSALDSESEHYVKGVLHALRNDCKTKR-------TVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAE  305 (325)
Q Consensus       245 -ts~LD~~~~~~i~~~l~~l~~~~~~g~-------tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~  305 (325)
                       +.|+||.....+.+++++...   .+.       ||++.+||+. -..+|++..+.+|+|+.+....+
T Consensus       281 ~~~Gypp~~~~~l~~l~ERag~---~~~GSIT~i~tVl~~~~d~~-dpi~d~~~~i~dG~ivLsr~la~  345 (440)
T TIGR01026       281 ATKGYTPSVFSTLPRLLERAGA---SGKGSITAFYTVLVEGDDMN-EPIADSVRGILDGHIVLSRALAQ  345 (440)
T ss_pred             cccccChhHHHHHHHHHHHhcc---CCCCeeeEEEEEEccCcCCC-cchhhhhccccceEEEEecchhh
Confidence             569999999999999988863   356       8888999983 12489999999999998766543

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=98.91  E-value=3.1e-09  Score=96.13  Aligned_cols=46  Identities=15%  Similarity=0.288  Sum_probs=38.7

Q ss_pred             HcCCCCEEEEeCCCCC------CCHHHHHHHHHHHHHhhccCCCCeEEEEEecCc
Q 020527          232 ILRDPAILLLDEATSA------LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL  280 (325)
Q Consensus       232 l~~~p~llllDEPts~------LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~  280 (325)
                      ...+|+++++| |+++      +|+.....+++.|.+++++  .|.|+++++|..
T Consensus       108 ~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~--~g~avl~v~H~~  159 (239)
T cd01125         108 LIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQ--TGAAILLVHHVR  159 (239)
T ss_pred             HhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHH--hCCEEEEEeccC
Confidence            35799999999 7764      6999888899999888764  588999999976

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>TIGR00611 recf recF protein

Probab=98.89  E-value=2.5e-09  Score=102.61  Aligned_cols=61  Identities=31%  Similarity=0.448  Sum_probs=55.1

Q ss_pred             CCChHHHHHHHHHHHHcC---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHH
Q 020527          217 LLSGGQKQRIAIARAILR---------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI  283 (325)
Q Consensus       217 ~LSgGq~QRv~iAral~~---------~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~  283 (325)
                      .+|.||+|+++||.+|+.         +|+|+|||||+++||+..+..+.+.+.+.      |.+++++||+++.+
T Consensus       275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~------~~qv~it~~~~~~~  344 (365)
T TIGR00611       275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL------GVQVFVTAISLDHL  344 (365)
T ss_pred             hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc------CCEEEEEecChhhc
Confidence            499999999999999999         99999999999999999999998888643      45899999998764

All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.89  E-value=3.8e-09  Score=104.02  Aligned_cols=63  Identities=17%  Similarity=0.282  Sum_probs=51.1

Q ss_pred             ceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHH
Q 020527           97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI  176 (325)
Q Consensus        97 iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl  176 (325)
                      ++++.++.+++|++++++||||+||||++..|++.+.+..|.                 ++|+++++|+  |..++.|++
T Consensus       245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~-----------------~kV~LI~~Dt--~RigA~EQL  305 (484)
T PRK06995        245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA-----------------SKVALLTTDS--YRIGGHEQL  305 (484)
T ss_pred             hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC-----------------CeEEEEeCCc--cchhHHHHH
Confidence            456677778889999999999999999999999987666653                 2578898887  567788888


Q ss_pred             hc
Q 020527          177 MY  178 (325)
Q Consensus       177 ~~  178 (325)
                      .+
T Consensus       306 r~  307 (484)
T PRK06995        306 RI  307 (484)
T ss_pred             HH
Confidence            54

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=98.85  E-value=2.8e-09  Score=92.81  Aligned_cols=79  Identities=23%  Similarity=0.295  Sum_probs=58.1

Q ss_pred             ceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCc--Cc-cccHH
Q 020527           97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQ--LL-QMDIK  173 (325)
Q Consensus        97 iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~--l~-~~tv~  173 (325)
                      ..+-+.+.+++|+.++|+||||||||||+++|+|+++|+.|.|.+.+..-  +... .+..+++++|...  .+ ..+..
T Consensus        14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E--~~~~-~~~~~~~~~~~~~~~~~~~~~~~   90 (186)
T cd01130          14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAE--LQLP-HPNWVRLVTRPGNVEGSGEVTMA   90 (186)
T ss_pred             HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccc--cCCC-CCCEEEEEEecCCCCCCCccCHH
Confidence            45556677899999999999999999999999999999999999977432  2111 1345677766543  23 35777


Q ss_pred             HHHhc
Q 020527          174 SNIMY  178 (325)
Q Consensus       174 enl~~  178 (325)
                      +.+..
T Consensus        91 ~~l~~   95 (186)
T cd01130          91 DLLRS   95 (186)
T ss_pred             HHHHH
Confidence            77643

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>TIGR00767 rho transcription termination factor Rho

Probab=98.84  E-value=9.2e-09  Score=98.54  Aligned_cols=81  Identities=20%  Similarity=0.230  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHhHhcCCCCccccccccccCCcccEEEEEEEEECCCCCCCCcee-----------eeeEEeeCCcEEEEEc
Q 020527           47 SIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILN-----------HVCLTIEANEVVAIVG  115 (325)
Q Consensus        47 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~iL~-----------~isl~i~~Ge~~~iiG  115 (325)
                      +..+.+|++++++.++....++     ....+.+.++||++.|++.  +.+|+           |+++.|.+|+.++|+|
T Consensus       103 ~~~~~ER~~~Ll~v~~vn~~~~-----e~~~~ri~Fe~LTf~YP~e--r~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG  175 (415)
T TIGR00767       103 SPKEGERYFALLKVESVNGDDP-----EKAKNRVLFENLTPLYPNE--RLRLETSTEDLSTRVLDLFAPIGKGQRGLIVA  175 (415)
T ss_pred             ccccHhHHHHHhCCCccCCCCc-----cccCCCeEEEEeeecCCCc--cceeecCccccceeeeeeEEEeCCCCEEEEEC
Confidence            4456799999999876532211     1123469999999999864  36897           9999999999999999


Q ss_pred             CCCChHHHHHHHHHcCCCC
Q 020527          116 LSGSGKSTFVNLLLRLYEP  134 (325)
Q Consensus       116 ~nGsGKSTLl~~l~gl~~~  134 (325)
                      |+|||||||++.|+..+..
T Consensus       176 ~~g~GKTtL~~~i~~~I~~  194 (415)
T TIGR00767       176 PPKAGKTVLLQKIAQAITR  194 (415)
T ss_pred             CCCCChhHHHHHHHHhhcc
Confidence            9999999999999998753

Members of this family differ in the specificity of RNA binding.

>PRK05399 DNA mismatch repair protein MutS; Provisional

Probab=98.82  E-value=1.1e-07  Score=100.52  Aligned_cols=136  Identities=21%  Similarity=0.216  Sum_probs=83.7

Q ss_pred             CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCC-CCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHH
Q 020527           96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY-EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS  174 (325)
Q Consensus        96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~-~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~e  174 (325)
                      .+-+|+++. +.+.++.|.|||.+||||+||.++-.. -..-|.                     |||-..  ...++.|
T Consensus       596 ~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~---------------------~VPa~~--a~i~~~d  651 (854)
T PRK05399        596 FVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIGS---------------------FVPAES--ARIGIVD  651 (854)
T ss_pred             eEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcCC---------------------ceeccc--eEecccC
Confidence            466788887 667899999999999999999986432 112221                     222111  0111111


Q ss_pred             HHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC--CCCEEEEeCC---CCCCC
Q 020527          175 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR--DPAILLLDEA---TSALD  249 (325)
Q Consensus       175 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~--~p~llllDEP---ts~LD  249 (325)
                      .|..    +            .+..+   .+.         ..+|--+.....++++|-.  ++.++|+|||   |+.+|
T Consensus       652 ~I~t----r------------iga~d---~i~---------~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~d  703 (854)
T PRK05399        652 RIFT----R------------IGASD---DLA---------SGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYD  703 (854)
T ss_pred             eeee----c------------cCccc---ccc---------cCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcch
Confidence            1110    0            00000   000         2367777777778877755  8999999999   99999


Q ss_pred             HHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcC
Q 020527          250 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVD  287 (325)
Q Consensus       250 ~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d  287 (325)
                      ..+  ....+++.+.+.  .+.+++++||+.+....++
T Consensus       704 g~a--ia~aile~l~~~--~~~~~l~aTH~~el~~l~~  737 (854)
T PRK05399        704 GLS--IAWAVAEYLHDK--IGAKTLFATHYHELTELEE  737 (854)
T ss_pred             hHH--HHHHHHHHHHhc--CCceEEEEechHHHHHHhh
Confidence            554  345566666542  2578999999966654444

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=98.79  E-value=1.8e-08  Score=107.53  Aligned_cols=79  Identities=24%  Similarity=0.324  Sum_probs=68.8

Q ss_pred             CCCCCChHHHHHHHHHHHHc------CC--CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh
Q 020527          214 DDDLLSGGQKQRIAIARAIL------RD--PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA  285 (325)
Q Consensus       214 ~~~~LSgGq~QRv~iAral~------~~--p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~  285 (325)
                      +...|||||+=.++||-+|+      .+  -++++|||||..||+.+...+.++|..+..   .+.+|+||||+.++...
T Consensus       812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~---~~~qiiIISH~eel~e~  888 (908)
T COG0419         812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLS---DGRQIIIISHVEELKER  888 (908)
T ss_pred             ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHh---cCCeEEEEeChHHHHHh
Confidence            34679999999888877764      45  699999999999999999999999999975   37899999999999999


Q ss_pred             cCEEEEEeCC
Q 020527          286 VDRIVVIDDG  295 (325)
Q Consensus       286 ~d~v~~l~~G  295 (325)
                      +|+++.++..
T Consensus       889 ~~~~i~V~k~  898 (908)
T COG0419         889 ADVRIRVKKD  898 (908)
T ss_pred             CCeEEEEEec
Confidence            9999888753

>PRK13891 conjugal transfer protein TrbE; Provisional

Probab=98.78  E-value=2.9e-07  Score=97.52  Aligned_cols=54  Identities=30%  Similarity=0.411  Sum_probs=48.4

Q ss_pred             HHHHHcCCCCEEEEeCCCCCC-CHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH
Q 020527          228 IARAILRDPAILLLDEATSAL-DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK  284 (325)
Q Consensus       228 iAral~~~p~llllDEPts~L-D~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~  284 (325)
                      |+|++..+|+++++|||+.+| |+..++.+.+.++.+++   .|.+++++||+++.+.
T Consensus       680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK---~g~~vil~TQs~~d~~  734 (852)
T PRK13891        680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRK---ANCLVLMATQSLSDAA  734 (852)
T ss_pred             HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHh
Confidence            678889999999999999999 79999999999999875   4779999999998764

>PRK14079 recF recombination protein F; Provisional

Probab=98.78  E-value=1.3e-08  Score=97.25  Aligned_cols=75  Identities=17%  Similarity=0.276  Sum_probs=60.0

Q ss_pred             CChHHHHHHHHHHHHc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCE
Q 020527          218 LSGGQKQRIAIARAIL---------RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDR  288 (325)
Q Consensus       218 LSgGq~QRv~iAral~---------~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~  288 (325)
                      +|+||++++++|+.|+         .+|+++|||||+++||+..+..+.+.+....      .++|-.|   +....||+
T Consensus       264 ~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~------q~~it~t---~~~~~~~~  334 (349)
T PRK14079        264 ASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP------QAIVAGT---EAPPGAAL  334 (349)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC------cEEEEcC---CCCCCCce
Confidence            8999999999999998         8999999999999999999999888875431      1333322   23345999


Q ss_pred             EEEEeCCEEEEEc
Q 020527          289 IVVIDDGRIIEVG  301 (325)
Q Consensus       289 v~~l~~G~i~~~g  301 (325)
                      ++.+++|++....
T Consensus       335 ~~~~~~~~~~~~~  347 (349)
T PRK14079        335 TLRIEAGVFTPEA  347 (349)
T ss_pred             EEEEeccEecCCC
Confidence            9999999875443

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.75  E-value=8.9e-09  Score=90.29  Aligned_cols=109  Identities=15%  Similarity=0.207  Sum_probs=59.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHH-----hcCCCCCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI-----MYGCPKDV  184 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl-----~~~~~~~~  184 (325)
                      +++|+||||||||||.++|.+++  ..|.+.+-+.+                   ......+..+..     .+..+...
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D-------------------~~~~~~~~~~~~~~~~~~~~~~~~~   59 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQD-------------------SYYKDLSHEELEERKNNNYDHPDAF   59 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEec-------------------ccccccccccHHHhccCCCCCCCcc
Confidence            48999999999999999999988  33444443332                   111111111110     11111111


Q ss_pred             CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q 020527          185 KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE  251 (325)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~  251 (325)
                      ..+...         +.+..+..+........+.|.|++++..+   .+.+|+++|+|.|+...++.
T Consensus        60 ~~~~~~---------~~l~~l~~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~  114 (198)
T cd02023          60 DFDLLI---------SHLQDLKNGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKE  114 (198)
T ss_pred             cHHHHH---------HHHHHHHCCCCEeccccccccCcccCCce---ecCCCCEEEEechhhccchh
Confidence            111111         11221111222222234678888776555   57889999999999999863

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.72  E-value=1.4e-08  Score=88.22  Aligned_cols=55  Identities=22%  Similarity=0.247  Sum_probs=45.4

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCC
Q 020527          108 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEP  165 (325)
Q Consensus       108 Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~  165 (325)
                      |++++|+||||||||||+++|++...|   .+.+.+..+........+..+++++|++
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~   56 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEF   56 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHH
Confidence            789999999999999999999998876   5888888776544444556788888875

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=98.72  E-value=2.1e-08  Score=110.47  Aligned_cols=60  Identities=28%  Similarity=0.402  Sum_probs=53.0

Q ss_pred             CCCChHHHHHHH----HHHH--------HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCch
Q 020527          216 DLLSGGQKQRIA----IARA--------ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS  281 (325)
Q Consensus       216 ~~LSgGq~QRv~----iAra--------l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~  281 (325)
                      ..||||||||++    +|++        +..+|++++|||||++||+.+...+++++.++      +.++||+||++-
T Consensus      1246 ~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l------~~~~i~~s~~~W 1317 (1353)
T TIGR02680      1246 GPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL------DLDFVMTSEREW 1317 (1353)
T ss_pred             cCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh------CCCEEEEccchh
Confidence            579999999996    5755        55899999999999999999999999999887      568999999864

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=98.71  E-value=1.3e-08  Score=87.84  Aligned_cols=66  Identities=26%  Similarity=0.360  Sum_probs=47.4

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHh-cceEEEccCCcCc-cccHHHHHhc
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR-EKIGFVGQEPQLL-QMDIKSNIMY  178 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r-~~i~~v~Q~~~l~-~~tv~enl~~  178 (325)
                      +||+++|+|+||||||||+++|++++.+    +.++|.++...  ...+ ...++.+|+...+ ..++.+|+.+
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~--~~~r~~~~g~~~~~~~~~~~~~~~~~~~~   69 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPA--KNIDKMSQGIPLTDEDRLPWLERLNDASY   69 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCH--hHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence            5999999999999999999999999877    68899887432  2222 2356666665433 4556555544

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=98.70  E-value=6.9e-08  Score=92.02  Aligned_cols=114  Identities=25%  Similarity=0.328  Sum_probs=70.7

Q ss_pred             eeCCcEEEEEcCCCChHHHHHHHHHcCCC-CCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCC
Q 020527          105 IEANEVVAIVGLSGSGKSTFVNLLLRLYE-PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD  183 (325)
Q Consensus       105 i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~-~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~  183 (325)
                      ..++..+.|.||+||||||+++.+.+.++ +..|.|.....++.-.    ......++.|..            .+    
T Consensus       119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~----~~~~~~~i~q~e------------vg----  178 (343)
T TIGR01420       119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV----HRNKRSLINQRE------------VG----  178 (343)
T ss_pred             hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh----ccCccceEEccc------------cC----
Confidence            35688999999999999999999998765 4467776654332110    000011111100            00    


Q ss_pred             CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q 020527          184 VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL  263 (325)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l  263 (325)
                                               .      ...+    -.-++++||-++|+++++||+.   |+++....++.   .
T Consensus       179 -------------------------~------~~~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~a---a  217 (343)
T TIGR01420       179 -------------------------L------DTLS----FANALRAALREDPDVILIGEMR---DLETVELALTA---A  217 (343)
T ss_pred             -------------------------C------CCcC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHHH---H
Confidence                                     0      0001    1224677888999999999997   88876543332   2


Q ss_pred             hccCCCCeEEEEEecCchHH
Q 020527          264 RNDCKTKRTVIVIAHRLSTI  283 (325)
Q Consensus       264 ~~~~~~g~tvi~vtH~~~~~  283 (325)
                          ..|.+++.+.|..+..
T Consensus       218 ----~tGh~v~~T~Ha~~~~  233 (343)
T TIGR01420       218 ----ETGHLVFGTLHTNSAA  233 (343)
T ss_pred             ----HcCCcEEEEEcCCCHH
Confidence                2488999999986543

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PRK08149 ATP synthase SpaL; Validated

Probab=98.69  E-value=1.9e-08  Score=97.72  Aligned_cols=70  Identities=26%  Similarity=0.316  Sum_probs=58.8

Q ss_pred             CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCC---CeEEECCEeCCCCCHHHH----hcceEEEccCC
Q 020527           95 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD---GQIYIDGFPLTDLDIRWL----REKIGFVGQEP  165 (325)
Q Consensus        95 ~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~---G~I~i~g~~i~~~~~~~~----r~~i~~v~Q~~  165 (325)
                      ..+++++ +++.+||+++|+|+||+|||||+++|+++..++.   |.|-.+|.++..+....+    ++++++|+...
T Consensus       139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s  215 (428)
T PRK08149        139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS  215 (428)
T ss_pred             cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence            4699999 9999999999999999999999999999999887   889999988865543332    35688887654

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.67  E-value=7.5e-09  Score=91.09  Aligned_cols=65  Identities=26%  Similarity=0.347  Sum_probs=48.3

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcCCC------------CCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHH
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRLYE------------PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIK  173 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~------------~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~  173 (325)
                      ++|++++|+||||||||||+++|++.++            |..|+  ++|.++...+...+++.   +.++..++..++.
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~   77 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYFFVSKEEFEEM---IENGEFLEWAEVF   77 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeEEcCHHHHHHH---HHcCCcEEEEEEC
Confidence            5899999999999999999999999985            77788  57877665565555443   2344444456666


Q ss_pred             HH
Q 020527          174 SN  175 (325)
Q Consensus       174 en  175 (325)
                      +|
T Consensus        78 ~~   79 (205)
T PRK00300         78 GN   79 (205)
T ss_pred             Cc
Confidence            65

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=98.65  E-value=1.1e-08  Score=91.81  Aligned_cols=61  Identities=21%  Similarity=0.259  Sum_probs=39.2

Q ss_pred             EeeCCcEEEEEcCCCChHHHHHHHHH-cCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCC
Q 020527          104 TIEANEVVAIVGLSGSGKSTFVNLLL-RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEP  165 (325)
Q Consensus       104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~-gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~  165 (325)
                      -+++|+.++|.||+|||||||...++ ....+..+-+++......+ ......+.+++.+|+.
T Consensus        16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~~~-~i~~~~~~~g~~~~~~   77 (229)
T TIGR03881        16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESRE-SIIRQAAQFGMDFEKA   77 (229)
T ss_pred             CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCCHH-HHHHHHHHhCCCHHHH
Confidence            48899999999999999999987654 2334455567776532110 1111234567766654

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>PLN03210 Resistant to P

Probab=98.64  E-value=9.9e-08  Score=104.28  Aligned_cols=44  Identities=30%  Similarity=0.391  Sum_probs=36.7

Q ss_pred             eeeEEeeCCcEEEEEcCCCChHHHHHHHHHcC-CCCCCCeEEECC
Q 020527          100 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL-YEPSDGQIYIDG  143 (325)
Q Consensus       100 ~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl-~~~~~G~I~i~g  143 (325)
                      -+++..+++++++|+|++|+|||||++.+.+- ....+|.+++++
T Consensus       199 lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~  243 (1153)
T PLN03210        199 LLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDR  243 (1153)
T ss_pred             HHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeec
Confidence            34677888999999999999999999999544 455689998876

syringae 6; Provisional

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=98.63  E-value=1.4e-07  Score=96.34  Aligned_cols=110  Identities=25%  Similarity=0.261  Sum_probs=64.8

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHcCCCCCCC--------eEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhc
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG--------QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMY  178 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G--------~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~  178 (325)
                      ..+.++|+||||+|||||++++.++.++..|        -+.+++..+. ++...+                   .|-.+
T Consensus       174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~-~d~~~i-------------------~~~ll  233 (615)
T TIGR02903       174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR-WDPREV-------------------TNPLL  233 (615)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc-CCHHHH-------------------hHHhc
Confidence            3567999999999999999999998865444        4777765542 222111                   11112


Q ss_pred             CCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHH
Q 020527          179 GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG  258 (325)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~  258 (325)
                      +.............+...++.+....+         ...+|||                +|++|| +..||+..+..+++
T Consensus       234 g~~~~~~~~~a~~~l~~~gl~~~~~g~---------v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~  287 (615)
T TIGR02903       234 GSVHDPIYQGARRDLAETGVPEPKTGL---------VTDAHGG----------------VLFIDE-IGELDPLLQNKLLK  287 (615)
T ss_pred             CCccHHHHHHHHHHHHHcCCCchhcCc---------hhhcCCC----------------eEEEec-cccCCHHHHHHHHH
Confidence            210000000111122222222111111         1357888                999999 79999999999999


Q ss_pred             HHHH
Q 020527          259 VLHA  262 (325)
Q Consensus       259 ~l~~  262 (325)
                      .+++
T Consensus       288 ~Le~  291 (615)
T TIGR02903       288 VLED  291 (615)
T ss_pred             HHhh
Confidence            8875

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=98.60  E-value=1e-07  Score=91.25  Aligned_cols=72  Identities=19%  Similarity=0.258  Sum_probs=50.7

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcCCCC--CCC-eEEECCEeCCCCCHHHHhcceEEEccCCc-----CccccHHHHHh
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDG-QIYIDGFPLTDLDIRWLREKIGFVGQEPQ-----LLQMDIKSNIM  177 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~--~~G-~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~-----l~~~tv~enl~  177 (325)
                      ++|..++|+||+||||||++++|++.+.+  ..+ .|.....++ ++....++...++++|...     -|...+++.+.
T Consensus       132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi-E~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR  210 (358)
T TIGR02524       132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI-EFVYDEIETISASVCQSEIPRHLNNFAAGVRNALR  210 (358)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc-eEeccccccccceeeeeeccccccCHHHHHHHHhc
Confidence            47899999999999999999999999843  334 565554444 3544444555678888642     24567777765


Q ss_pred             c
Q 020527          178 Y  178 (325)
Q Consensus       178 ~  178 (325)
                      .
T Consensus       211 ~  211 (358)
T TIGR02524       211 R  211 (358)
T ss_pred             c
Confidence            4

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>PRK01889 GTPase RsgA; Reviewed

Probab=98.59  E-value=6.5e-08  Score=92.58  Aligned_cols=80  Identities=21%  Similarity=0.167  Sum_probs=64.6

Q ss_pred             ceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHH
Q 020527           97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI  176 (325)
Q Consensus        97 iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl  176 (325)
                      -++.+.-.+++|++++|+|+||+|||||++.|+|..++..|+|.+++..-..   ...++++.+++|+..+++.+...++
T Consensus       184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~---tt~~~~l~~l~~~~~l~DtpG~~~~  260 (356)
T PRK01889        184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH---TTTHRELHPLPSGGLLIDTPGMREL  260 (356)
T ss_pred             cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc---hhhhccEEEecCCCeecCCCchhhh
Confidence            4566666788999999999999999999999999999999999998754322   1235679999999888876667776


Q ss_pred             hcC
Q 020527          177 MYG  179 (325)
Q Consensus       177 ~~~  179 (325)
                      .+.
T Consensus       261 ~l~  263 (356)
T PRK01889        261 QLW  263 (356)
T ss_pred             ccc
Confidence            653

>TIGR00235 udk uridine kinase

Probab=98.54  E-value=4.5e-08  Score=86.57  Aligned_cols=29  Identities=28%  Similarity=0.344  Sum_probs=27.1

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcCCCC
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRLYEP  134 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~  134 (325)
                      ++|++++|+||||||||||++.|++++++
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~   32 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK   32 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            57999999999999999999999999875

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=98.50  E-value=2.7e-07  Score=79.47  Aligned_cols=60  Identities=18%  Similarity=0.210  Sum_probs=42.0

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEE-----------CCEeCCCCCHHHH-----hcceEEEccCCcCc
Q 020527          108 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI-----------DGFPLTDLDIRWL-----REKIGFVGQEPQLL  168 (325)
Q Consensus       108 Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i-----------~g~~i~~~~~~~~-----r~~i~~v~Q~~~l~  168 (325)
                      |++++|+||||||||||++.|++.+.+. |.+.+           +|.+....+...+     .+.++.++|.+.++
T Consensus         1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (179)
T TIGR02322         1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLS   76 (179)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCcc
Confidence            6789999999999999999999987654 65555           4444433333322     23477778876554

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK13898 type IV secretion system ATPase VirB4; Provisional

Probab=98.49  E-value=7.1e-06  Score=86.64  Aligned_cols=49  Identities=24%  Similarity=0.350  Sum_probs=42.9

Q ss_pred             HHcCCCCEEEEeCCCCCCC-HHHHHHHHHHHHHhhccCCCCeEEEEEecCchH
Q 020527          231 AILRDPAILLLDEATSALD-SESEHYVKGVLHALRNDCKTKRTVIVIAHRLST  282 (325)
Q Consensus       231 al~~~p~llllDEPts~LD-~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~  282 (325)
                      .+..+|.++++|||...|| +...+.+.+.++.+++   .|..++++||+++.
T Consensus       638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK---~~~~~i~~TQ~~~d  687 (800)
T PRK13898        638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRK---LNTFVIFATQSVED  687 (800)
T ss_pred             HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHH
Confidence            4567899999999999999 8888899999999875   47799999999865

>PRK09862 putative ATP-dependent protease; Provisional

Probab=98.46  E-value=1.3e-07  Score=93.94  Aligned_cols=63  Identities=11%  Similarity=0.120  Sum_probs=56.8

Q ss_pred             EEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCC
Q 020527           82 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT  147 (325)
Q Consensus        82 ~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~  147 (325)
                      +.|+++.|+..   .+++++++.+..|+.++|+||||||||||++.|.|+++|.+|++.++...+.
T Consensus       187 ~~d~~~v~Gq~---~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~  249 (506)
T PRK09862        187 QHDLSDVIGQE---QGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAIL  249 (506)
T ss_pred             ccCeEEEECcH---HHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhh
Confidence            45888888653   5999999999999999999999999999999999999999999999887764

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=98.46  E-value=1.1e-07  Score=67.32  Aligned_cols=39  Identities=23%  Similarity=0.422  Sum_probs=30.9

Q ss_pred             eeeeeEEeeC-CcEEEEEcCCCChHHHHHHHHHcCCCCCC
Q 020527           98 LNHVCLTIEA-NEVVAIVGLSGSGKSTFVNLLLRLYEPSD  136 (325)
Q Consensus        98 L~~isl~i~~-Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~  136 (325)
                      +++-++++.+ |+++.|.||||||||||+.++.=++-+..
T Consensus        12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~   51 (62)
T PF13555_consen   12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT   51 (62)
T ss_pred             cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence            4456677775 57999999999999999999886665543

>PRK07594 type III secretion system ATPase SsaN; Validated

Probab=98.45  E-value=1.3e-07  Score=92.09  Aligned_cols=64  Identities=19%  Similarity=0.213  Sum_probs=55.9

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEe
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP  145 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~  145 (325)
                      .++.++++..|...  ..+++++ |++.+||+++|+|+||+|||||+++|+++.+++.|.+.+.|..
T Consensus       129 ~~~r~~v~~~l~tG--i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeR  192 (433)
T PRK07594        129 AMVRQPITQPLMTG--IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER  192 (433)
T ss_pred             ceeccCHhheeCCC--ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCC
Confidence            36777888777542  5799999 9999999999999999999999999999999999988877754

>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=98.45  E-value=2.5e-06  Score=82.23  Aligned_cols=172  Identities=24%  Similarity=0.342  Sum_probs=115.4

Q ss_pred             EEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHH-cCCCCCCCeEEECCEeCCCCCHHHHhcceEEEcc
Q 020527           85 ISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQ  163 (325)
Q Consensus        85 v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~-gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q  163 (325)
                      +++..+.+   ..+.+.  -|++| ++.|+|.+=-||||||++|. |.|..--|    ||.+..              --
T Consensus       227 ve~~LP~~---g~v~GM--GIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipG----DGRE~V--------------VT  282 (448)
T PF09818_consen  227 VEIELPNG---GTVTGM--GIPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPG----DGREFV--------------VT  282 (448)
T ss_pred             EEEECCCC---CEEEEE--eeCCc-EEEEECCCCccHHHHHHHHHhcccCCCCC----CCceEE--------------EE
Confidence            55655543   245554  57999 99999999999999999997 78765444    343211              00


Q ss_pred             CCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC-CCCChHHHHHHHHHHHHcCCCCEEEEe
Q 020527          164 EPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQRIAIARAILRDPAILLLD  242 (325)
Q Consensus       164 ~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~LSgGq~QRv~iAral~~~p~llllD  242 (325)
                      ++.-.  .|+         ..+.    .....+.+..|+..+|.|.++.... .+=||-.-|=..|..||=..+++||+|
T Consensus       283 ~~~av--kir---------AEDG----R~V~~vDISpFI~~LP~g~dT~~FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiD  347 (448)
T PF09818_consen  283 DPDAV--KIR---------AEDG----RSVEGVDISPFINNLPGGKDTTCFSTENASGSTSQAANIMEALEAGARLLLID  347 (448)
T ss_pred             CCCce--EEE---------ecCC----ceEeCccchHHHhhCCCCCCCCcccccCCCchHHHHHHHHHHHHcCCCEEEEc
Confidence            11000  000         0000    0123345677899999888776432 467999999999999999999999999


Q ss_pred             CCCCCCCH-----HHHHHH----------HHHHHHhhccCCCCeEEEEEecCchHH-HhcCEEEEEeCCEE
Q 020527          243 EATSALDS-----ESEHYV----------KGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRI  297 (325)
Q Consensus       243 EPts~LD~-----~~~~~i----------~~~l~~l~~~~~~g~tvi~vtH~~~~~-~~~d~v~~l~~G~i  297 (325)
                      |=||+-..     ..+..+          .+.++.+.++  .|.+.|+|+=-.... ..||+|+.|++-+-
T Consensus       348 EDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~--~GvStIlV~Ggsgdy~~vAD~Vi~Md~Y~~  416 (448)
T PF09818_consen  348 EDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEK--LGVSTILVVGGSGDYFDVADRVIMMDEYRP  416 (448)
T ss_pred             CcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHH--cCceEEEEeccchhhHhhCCEEEEecCccc
Confidence            99998543     333333          3445566543  588888888777665 56999999998764

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.44  E-value=1.7e-07  Score=88.34  Aligned_cols=72  Identities=17%  Similarity=0.171  Sum_probs=53.6

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCC------CHHHHhcceEEEccCCcCcc-ccHHHHHh
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL------DIRWLREKIGFVGQEPQLLQ-MDIKSNIM  177 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~------~~~~~r~~i~~v~Q~~~l~~-~tv~enl~  177 (325)
                      ++|++++++|||||||||++..|++.+.+..++|.+.+.|....      .....+..+.+++|.....+ .++++++.
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~  190 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQ  190 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHH
Confidence            57899999999999999999999999998888999988776321      11223566889888654332 34555553

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=98.44  E-value=2.9e-07  Score=86.62  Aligned_cols=50  Identities=26%  Similarity=0.313  Sum_probs=45.9

Q ss_pred             CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEe
Q 020527           95 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP  145 (325)
Q Consensus        95 ~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~  145 (325)
                      ..+++++ +.+.+|++++|+|+||+|||||+++|+|+.+|+.|.+..-|.+
T Consensus        57 i~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer  106 (326)
T cd01136          57 VRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGER  106 (326)
T ss_pred             cEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecC
Confidence            4699999 9999999999999999999999999999999999888776654

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.42  E-value=2.8e-07  Score=82.84  Aligned_cols=55  Identities=29%  Similarity=0.492  Sum_probs=40.0

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCe----EEECCEeCCCCCHHHHhcceEEEccC
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ----IYIDGFPLTDLDIRWLREKIGFVGQE  164 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~----I~i~g~~i~~~~~~~~r~~i~~v~Q~  164 (325)
                      .+..++||.||||||||||++.|++++++.+|.    |.+|+..   .+ ...+...+++++.
T Consensus        31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~---~~-~~~~~~~g~~~~~   89 (229)
T PRK09270         31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFH---LD-NAVLDAHGLRPRK   89 (229)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEeccccc---CC-HHHHHhccccccc
Confidence            346799999999999999999999999999998    4444422   12 2223345666653

>PLN02796 D-glycerate 3-kinase

Probab=98.40  E-value=9.5e-08  Score=90.13  Aligned_cols=60  Identities=25%  Similarity=0.307  Sum_probs=48.6

Q ss_pred             CceeeeeEEe---eCCcE-----EEEEcCCCChHHHHHHHHHcCCCCC---CCeEEECCEeCCCCCHHHHh
Q 020527           96 PILNHVCLTI---EANEV-----VAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLDIRWLR  155 (325)
Q Consensus        96 ~iL~~isl~i---~~Ge~-----~~iiG~nGsGKSTLl~~l~gl~~~~---~G~I~i~g~~i~~~~~~~~r  155 (325)
                      .+++++++.+   ++|+.     +||+|+||||||||++.|.+++++.   .|.|.+||..+.......++
T Consensus        80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~  150 (347)
T PLN02796         80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLA  150 (347)
T ss_pred             HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHH
Confidence            4788888877   67776     9999999999999999999999874   68899999887554444444

>PRK06315 type III secretion system ATPase; Provisional

Probab=98.40  E-value=2e-07  Score=90.97  Aligned_cols=82  Identities=23%  Similarity=0.262  Sum_probs=57.7

Q ss_pred             CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-CCCeEEECC---EeCCCCCHHHHh---cceEEE-----c
Q 020527           95 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYIDG---FPLTDLDIRWLR---EKIGFV-----G  162 (325)
Q Consensus        95 ~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-~~G~I~i~g---~~i~~~~~~~~r---~~i~~v-----~  162 (325)
                      ..+++++ |.+.+|++++|+|+||||||||+++|+|+.++ +.|.|.+.|   .++.++....++   .+.+++     +
T Consensus       152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~  230 (442)
T PRK06315        152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSD  230 (442)
T ss_pred             EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCC
Confidence            4588988 99999999999999999999999999999854 446666644   555443333332   335555     8


Q ss_pred             cCCcC-c-----cccHHHHHh
Q 020527          163 QEPQL-L-----QMDIKSNIM  177 (325)
Q Consensus       163 Q~~~l-~-----~~tv~enl~  177 (325)
                      |+|.. +     ..++.|.+.
T Consensus       231 q~p~~rlnp~~va~~IAE~~r  251 (442)
T PRK06315        231 QSSQLRLNAAYVGTAIAEYFR  251 (442)
T ss_pred             CCHHHHhhHHHHHHHHHHHHH
Confidence            88742 1     235566654

>PRK13873 conjugal transfer ATPase TrbE; Provisional

Probab=98.37  E-value=9.7e-06  Score=85.74  Aligned_cols=61  Identities=25%  Similarity=0.337  Sum_probs=48.5

Q ss_pred             HcCCCCEEEEeCCCCCCC-HHHHHHHHHHHHHhhccCCCCeEEEEEecCchHH----------HhcCEEEEEeCC
Q 020527          232 ILRDPAILLLDEATSALD-SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI----------KAVDRIVVIDDG  295 (325)
Q Consensus       232 l~~~p~llllDEPts~LD-~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~----------~~~d~v~~l~~G  295 (325)
                      +-.+|+++++|||+..|| +..+..+.+.++.+++   .|.+++++||+++.+          ..|+-.++|.+.
T Consensus       632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK---~~~~~i~~TQ~~~d~~~s~~~~~il~n~~t~i~L~~~  703 (811)
T PRK13873        632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRK---KNVSVIFATQSLADIDGSAIAPAIIESCPTRIFLPNE  703 (811)
T ss_pred             hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHH---cCCEEEEEECCHHHHhcCchHHHHHHhCCeeEEcCCc
Confidence            445899999999999999 7788899999999875   477999999998743          235656666554

>TIGR00416 sms DNA repair protein RadA

Probab=98.37  E-value=9.7e-07  Score=87.10  Aligned_cols=42  Identities=24%  Similarity=0.320  Sum_probs=33.0

Q ss_pred             EeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCe-EEECCEe
Q 020527          104 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ-IYIDGFP  145 (325)
Q Consensus       104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~-I~i~g~~  145 (325)
                      -+.+|+++.|.|++|+|||||+..++.......+. +++.+.+
T Consensus        90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EE  132 (454)
T TIGR00416        90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEE  132 (454)
T ss_pred             CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcC
Confidence            48999999999999999999999887765444444 4666643

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>PRK07960 fliI flagellum-specific ATP synthase; Validated

Probab=98.36  E-value=2.8e-07  Score=89.82  Aligned_cols=69  Identities=22%  Similarity=0.239  Sum_probs=54.8

Q ss_pred             CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCC---CeEEECCEeCCCCCH---HHHhcceEEEccCC
Q 020527           96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD---GQIYIDGFPLTDLDI---RWLREKIGFVGQEP  165 (325)
Q Consensus        96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~---G~I~i~g~~i~~~~~---~~~r~~i~~v~Q~~  165 (325)
                      .+++.+ |++.+|++++|+|+||+|||||+++|+|+.+|+.   |.|-+.|.++.++-.   ..-....++|+|+.
T Consensus       164 raID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~  238 (455)
T PRK07960        164 RAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAP  238 (455)
T ss_pred             eeeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEEC
Confidence            466666 9999999999999999999999999999999985   899999998754211   11124577888765

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.36  E-value=3.9e-06  Score=68.05  Aligned_cols=58  Identities=22%  Similarity=0.248  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccC--CCCeEEEEEecCch
Q 020527          223 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC--KTKRTVIVIAHRLS  281 (325)
Q Consensus       223 ~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~--~~g~tvi~vtH~~~  281 (325)
                      .+......+...++.++++||.-.. ++.....+.+.+..+....  ..+..+|+++++..
T Consensus        72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~  131 (151)
T cd00009          72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL  131 (151)
T ss_pred             hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence            4556666677889999999998665 5666677777777764310  14678999998654

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK09099 type III secretion system ATPase; Provisional

Probab=98.35  E-value=4.8e-07  Score=88.37  Aligned_cols=51  Identities=24%  Similarity=0.284  Sum_probs=47.5

Q ss_pred             CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeC
Q 020527           95 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL  146 (325)
Q Consensus        95 ~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i  146 (325)
                      ..+++++ +.+.+|++++|+|+||+|||||+++|+++.+++.|.|.+.|+.-
T Consensus       151 i~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer~  201 (441)
T PRK09099        151 VRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGERG  201 (441)
T ss_pred             ceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccCh
Confidence            4699999 99999999999999999999999999999999999999888654

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=98.34  E-value=4.8e-07  Score=83.99  Aligned_cols=51  Identities=18%  Similarity=0.135  Sum_probs=38.0

Q ss_pred             cEEEEEcCCCChHHHHHHHHHcCCC--CCCCeEEECCEeCCCCCHHHHhcceEE
Q 020527          109 EVVAIVGLSGSGKSTFVNLLLRLYE--PSDGQIYIDGFPLTDLDIRWLREKIGF  160 (325)
Q Consensus       109 e~~~iiG~nGsGKSTLl~~l~gl~~--~~~G~I~i~g~~i~~~~~~~~r~~i~~  160 (325)
                      .++||.||||||||||+++|.+++.  |.+|.|.+-+.|--..+... ++..++
T Consensus        63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~-l~~~g~  115 (290)
T TIGR00554        63 YIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQV-LKERNL  115 (290)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHH-HHHcCC
Confidence            4899999999999999999999997  77888887665543333333 333454

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=98.34  E-value=1.8e-06  Score=82.97  Aligned_cols=41  Identities=24%  Similarity=0.349  Sum_probs=33.1

Q ss_pred             EeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEE-ECCE
Q 020527          104 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY-IDGF  144 (325)
Q Consensus       104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~-i~g~  144 (325)
                      -+.+|+++.|.|++|+|||||+..++.......+.+. +.+.
T Consensus        78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E  119 (372)
T cd01121          78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE  119 (372)
T ss_pred             CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence            4789999999999999999999998877665556654 4553

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A

Probab=98.33  E-value=1.1e-06  Score=67.39  Aligned_cols=47  Identities=40%  Similarity=0.500  Sum_probs=35.2

Q ss_pred             CCCChHHHHH-HHHHHH------HcC------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 020527          216 DLLSGGQKQR-IAIARA------ILR------DPAILLLDEATSALDSESEHYVKGVLHA  262 (325)
Q Consensus       216 ~~LSgGq~QR-v~iAra------l~~------~p~llllDEPts~LD~~~~~~i~~~l~~  262 (325)
                      ..+||||||. +.+|-+      +-.      .|++++|||||++||+.....+++++++
T Consensus        31 ~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~   90 (90)
T PF13558_consen   31 GTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ   90 (90)
T ss_dssp             GGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred             CCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence            5699999954 333332      223      3799999999999999999999988863

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	325
4ayt_A	595	Structure Of The Human Mitochondrial Abc Transporte		3e-61
3g60_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		3e-60
4ayw_A	619	Structure Of The Human Mitochondrial Abc Transporte		3e-60
3g5u_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		3e-60
4f4c_A	1321	The Crystal Structure Of The Multi-Drug Transporter		1e-52
2hyd_A	578	Multidrug Abc Transporter Sav1866 Length = 578		1e-50
3b5y_A	582	Crystal Structure Of Msba From Salmonella Typhimuri		9e-49
3b5w_A	582	Crystal Structure Of Eschericia Coli Msba Length =		1e-48
3b5x_A	582	Crystal Structure Of Msba From Vibrio Cholerae Leng		7e-46
1jj7_A	260	Crystal Structure Of The C-Terminal Atpase Domain O		1e-44
1mt0_A	241	Atp-Binding Domain Of Haemolysin B From Escherichia		2e-44
2ff7_A	247	The Abc-Atpase Of The Abc-Transporter Hlyb In The A		2e-44
2pmk_A	243	Crystal Structures Of An Isolated Abc-Atpase In Com		3e-44
2ffb_A	247	The Crystal Structure Of The Hlyb-Nbd E631q Mutant		5e-44
3b5j_A	243	Crystal Structures Of The S504a Mutant Of An Isolat		7e-44
1xef_A	241	Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI		3e-43
2ffa_A	247	Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr		3e-43
3qf4_B	598	Crystal Structure Of A Heterodimeric Abc Transporte		3e-41
2ixf_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		5e-41
2ixe_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		6e-40
1mv5_A	243	Crystal Structure Of Lmra Atp-Binding Domain Length		3e-39
2ixg_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		3e-38
3nh6_A	306	Nucleotide Binding Domain Of Human Abcb6 (Apo Struc		3e-38
2ghi_A	260	Crystal Structure Of Plasmodium Yoelii Multidrug Re		2e-36
3qf4_A	587	Crystal Structure Of A Heterodimeric Abc Transporte		5e-35
3c41_J	242	Abc Protein Artp In Complex With Amp-PnpMG2+ Length		2e-20
2olj_A	263	Abc Protein Artp In Complex With AdpMG2+ Length = 2		2e-20
3dhw_C	343	Crystal Structure Of Methionine Importer Metni Leng		3e-20
1l2t_A	235	Dimeric Structure Of Mj0796, A Bacterial Abc Transp		4e-20
1f3o_A	235	Crystal Structure Of Mj0796 Atp-Binding Cassette Le		4e-20
3tif_A	235	Dimeric Structure Of A Post-Hydrolysis State Of The		1e-19
3tui_C	366	Inward Facing Conformations Of The Metni Methionine		1e-19
3tuj_C	366	Inward Facing Conformations Of The Metni Methionine		6e-19
3d31_A	348	Modbc From Methanosarcina Acetivorans Length = 348		4e-18
1vci_A	373	Crystal Structure Of The Atp-binding Cassette Of Mu		3e-17
1v43_A	372	Crystal Structure Of Atpase Subunit Of Abc Sugar Tr		4e-17
2it1_A	362	Structure Of Ph0203 Protein From Pyrococcus Horikos		4e-17
1z47_A	355	Structure Of The Atpase Subunit Cysa Of The Putativ		2e-15
2pcj_A	224	Crystal Structure Of Abc Transporter (Aq_297) From		3e-15
4hlu_A	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		4e-15
4hlu_D	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		5e-15
1oxs_C	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		4e-14
3gfo_A	275	Structure Of Cbio1 From Clostridium Perfringens: Pa		5e-14
2yz2_A	266	Crystal Structure Of The Abc Transporter In The Cob		1e-13
2yyz_A	359	Crystal Structure Of Sugar Abc Transporter, Atp-Bin		1e-13
1oxx_K	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		2e-13
2cbz_A	237	Structure Of The Human Multidrug Resistance Protein		4e-13
1r0z_A	286	Phosphorylated Cystic Fibrosis Transmembrane Conduc		3e-12
1q3h_A	286	Mouse Cftr Nbd1 With Amp.Pnp Length = 286		3e-12
3gd7_A	390	Crystal Structure Of Human Nbd2 Complexed With N6-		3e-12
1yqt_A	538	Rnase-L Inhibitor Length = 538		4e-12
1xfa_A	283	Structure Of Nbd1 From Murine Cftr- F508r Mutant Le		1e-11
1xf9_A	283	Structure Of Nbd1 From Murine Cftr- F508s Mutant Le		1e-11
3bk7_A	607	Structure Of The Complete Abce1RNAASE-L Inhibitor P		2e-11
3j15_B	593	Model Of Ribosome-Bound Archaeal Pelota And Abce1 L		2e-11
2onk_A	240	Abc Transporter Modbc In Complex With Its Binding P		4e-11
1b0u_A	262	Atp-Binding Subunit Of The Histidine Permease From		6e-11
3si7_A	285	The Crystal Structure Of The Nbd1 Domain Of The Mou		1e-10
1g29_1	372	Malk Length = 372		1e-10
2pzg_A	241	Minimal Human Cftr First Nucleotide Binding Domain		2e-10
3fvq_A	359	Crystal Structure Of The Nucleotide Binding Domain		2e-10
2pze_A	229	Minimal Human Cftr First Nucleotide Binding Domain		2e-10
1xmi_A	291	Crystal Structure Of Human F508a Nbd1 Domain With A		3e-10
4fwi_B	334	Crystal Structure Of The Nucleotide-binding Domain		8e-10
1q12_A	381	Crystal Structure Of The Atp-bound E. Coli Malk Len		8e-10
1q1b_A	381	Crystal Structure Of E. Coli Malk In The Nucleotide		8e-10
4g1u_C	266	X-Ray Structure Of The Bacterial Heme Transporter H		9e-10
2nq2_C	253	An Inward-Facing Conformation Of A Putative Metal-C		1e-09
1g6h_A	257	Crystal Structure Of The Adp Conformation Of Mj1267		1e-09
2bbs_A	290	Human Deltaf508 Nbd1 With Three Solubilizing Mutati		1e-09
2r6g_A	381	The Crystal Structure Of The E. Coli Maltose Transp		2e-09
2bbt_A	290	Human Deltaf508 Nbd1 With Two Solublizing Mutations		4e-09
2d62_A	375	Crystal Structure Of Multiple Sugar Binding Transpo		4e-09
2pzf_A	228	Minimal Human Cftr First Nucleotide Binding Domain		7e-09
2bbo_A	291	Human Nbd1 With Phe508 Length = 291		9e-09
1gaj_A	257	Crystal Structure Of A Nucleotide-Free Atp-Binding		4e-08
1g9x_A	257	Characterization Of The Twinning Structure Of Mj126		6e-08
2iwh_A	986	Structure Of Yeast Elongation Factor 3 In Complex W		2e-07
1xmj_A	290	Crystal Structure Of Human Deltaf508 Human Nbd1 Dom		3e-07
1sgw_A	214	Putative Abc Transporter (Atp-Binding Protein) From		8e-07
2iw3_A	986	Elongation Factor 3 In Complex With Adp Length = 98		1e-06
2ix8_A	976	Model For Eef3 Bound To An 80s Ribosome Length = 97		1e-06
1vpl_A	256	Crystal Structure Of Abc Transporter Atp-binding Pr		4e-06
2ihy_A	279	Structure Of The Staphylococcus Aureus Putative Atp		1e-05
3j16_B	608	Models Of Ribosome-Bound Dom34p And Rli1p And Their		3e-05
1ji0_A	240	Crystal Structure Analysis Of The Abc Transporter F		4e-05
2zu0_C	267	Crystal Structure Of Sufc-Sufd Complex Involved In		1e-04
2d3w_A	248	Crystal Structure Of Escherichia Coli Sufc, An Atpa		1e-04
2pjz_A	263	The Crystal Structure Of Putative Cobalt Transport		8e-04

>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595

Iteration: 1
 Score =  231 bits (590), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 136/323 (42%), Positives = 193/323 (59%), Gaps = 12/323 (3%)
Query: 6   GGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQ 65
           GG+ +    ++  +L+ +++Y  W+  +   +    S L++ +GA  ++++L++  P   
Sbjct: 267 GGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLP 326
Query: 66  FLSEGVKL--QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKST 123
           F +EGV L  +   G ++F N+ F YP+RP VPI     L+I +  V A+VG SGSGKST
Sbjct: 327 F-NEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKST 385
Query: 124 FVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC--P 181
            ++LLLRLY+P+ G I +DG  +  L+  WLR KIG V QEP L    I  NI YG   P
Sbjct: 386 VLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDP 445
Query: 182 KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAIL 239
             V  E+I+  A+ A    FI + P G+ T+V +   LLSGGQKQRIAIARA+L++P IL
Sbjct: 446 SSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKIL 505
Query: 240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXX 299
           LLDEATSALD+E+E+ V+  L  L +     RTV+VIAHRLSTIK               
Sbjct: 506 LLDEATSALDAENEYLVQEALDRLMDG----RTVLVIAHRLSTIKNANMVAVLDQGKITE 561
Query: 300 XXNHAELLHK-GRLYAKLVKRQT 321
              H ELL K   +Y KL+ +Q+
Sbjct: 562 YGKHEELLSKPNGIYRKLMNKQS 584

>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score =  228 bits (582), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 139/324 (42%), Positives = 187/324 (57%), Gaps = 32/324 (9%)
Query: 1   MAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDL 60
            +VL+G  S+  GQ SP                      N+ +   + GA  +VF++ID 
Sbjct: 332 FSVLIGAFSV--GQASP----------------------NIEAFANARGAAYEVFKIIDN 367
Query: 61  LPS-NQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGS 119
            PS + F   G K   + G+++F NI F YPSR  V IL  + L +++ + VA+VG SG 
Sbjct: 368 KPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGC 427
Query: 120 GKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYG 179
           GKST V L+ RLY+P DG + IDG  +  +++R+LRE IG V QEP L    I  NI YG
Sbjct: 428 GKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYG 487
Query: 180 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPA 237
             +DV  ++IE A K+A  ++FI+ LP  ++TLV +    LSGGQKQRIAIARA++R+P 
Sbjct: 488 -REDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPK 546
Query: 238 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXX 297
           ILLLDEATSALD+ESE  V+  L   R      RT IVIAHRLST++             
Sbjct: 547 ILLLDEATSALDTESEAVVQAALDKAREG----RTTIVIAHRLSTVRNADVIAGFDGGVI 602
Query: 298 XXXXNHAELLHKGRLYAKLVKRQT 321
               NH EL+ +  +Y KLV  QT
Sbjct: 603 VEQGNHDELMREKGIYFKLVMTQT 626

>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619

Iteration: 1
 Score =  228 bits (582), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 135/323 (41%), Positives = 192/323 (59%), Gaps = 12/323 (3%)
Query: 6   GGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQ 65
           GG+ +    ++  +L+ +++Y  W+  +   +    S L++ +GA  ++++L++  P   
Sbjct: 298 GGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLP 357
Query: 66  FLSEGVKL--QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKST 123
           F +EGV L  +   G ++F N+ F YP+RP VPI     L+I +  V A+VG SGSGKST
Sbjct: 358 F-NEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKST 416
Query: 124 FVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC--P 181
            ++LLLRLY+P+ G I +DG  +  L+  WLR KIG V QEP L    I  NI YG   P
Sbjct: 417 VLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDP 476
Query: 182 KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAIL 239
             V  E+I+  A+ A    FI + P G+ T+V +   LLSGGQKQRIAIARA+L++P IL
Sbjct: 477 SSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKIL 536
Query: 240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXX 299
           LLDEATSALD+E+E+ V+  L  L +     RTV+VIAH LSTIK               
Sbjct: 537 LLDEATSALDAENEYLVQEALDRLMDG----RTVLVIAHHLSTIKNANMVAVLDQGKITE 592
Query: 300 XXNHAELLHK-GRLYAKLVKRQT 321
              H ELL K   +Y KL+ +Q+
Sbjct: 593 YGKHEELLSKPNGIYRKLMNKQS 615

>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score =  228 bits (582), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 139/324 (42%), Positives = 187/324 (57%), Gaps = 32/324 (9%)
Query: 1   MAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDL 60
            +VL+G  S+  GQ SP                      N+ +   + GA  +VF++ID 
Sbjct: 332 FSVLIGAFSV--GQASP----------------------NIEAFANARGAAYEVFKIIDN 367
Query: 61  LPS-NQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGS 119
            PS + F   G K   + G+++F NI F YPSR  V IL  + L +++ + VA+VG SG 
Sbjct: 368 KPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGC 427
Query: 120 GKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYG 179
           GKST V L+ RLY+P DG + IDG  +  +++R+LRE IG V QEP L    I  NI YG
Sbjct: 428 GKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYG 487
Query: 180 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPA 237
             +DV  ++IE A K+A  ++FI+ LP  ++TLV +    LSGGQKQRIAIARA++R+P 
Sbjct: 488 -REDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPK 546
Query: 238 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXX 297
           ILLLDEATSALD+ESE  V+  L   R      RT IVIAHRLST++             
Sbjct: 547 ILLLDEATSALDTESEAVVQAALDKAREG----RTTIVIAHRLSTVRNADVIAGFDGGVI 602
Query: 298 XXXXNHAELLHKGRLYAKLVKRQT 321
               NH EL+ +  +Y KLV  QT
Sbjct: 603 VEQGNHDELMREKGIYFKLVMTQT 626

>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321

Iteration: 1
 Score =  203 bits (516), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 120/284 (42%), Positives = 166/284 (58%), Gaps = 8/284 (2%)
Query: 41  LSSLLQSIGATEKVFQLIDLLPSNQFLSE-GVKLQRLMGHVQFVNISFHYPSRPTVPILN 99
           L+ L  + GA   +++++D  P     S+ G K  ++ G +   N+ F YPSRP VPIL 
Sbjct: 376 LAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILR 435
Query: 100 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 159
            + L + A + VA+VG SG GKST ++LLLR Y+   G+I IDG  + D+++ +LR+ + 
Sbjct: 436 GMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVA 495
Query: 160 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DL 217
            V QEP L    I+ NI  G  + +  E++  A K A   +FI +LP GY TLV D    
Sbjct: 496 VVSQEPALFNCTIEENISLG-KEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQ 554
Query: 218 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIA 277
           LSGGQKQRIAIARA++R+P ILLLDEATSALD+ESE    G++    +     RT I+IA
Sbjct: 555 LSGGQKQRIAIARALVRNPKILLLDEATSALDAESE----GIVQQALDKAAKGRTTIIIA 610
Query: 278 HRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGRLYAKLVKRQT 321
           HRLSTI+                 +H  L+ +  LY  LV  QT
Sbjct: 611 HRLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLVTAQT 654

>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578

Iteration: 1
 Score =  196 bits (499), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 125/314 (39%), Positives = 169/314 (53%), Gaps = 14/314 (4%)
Query: 13  GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVK 72
           G ++   L  +V Y E L     R+V + ++L QS  + ++VFQLID    +  +  GV 
Sbjct: 273 GSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID---EDYDIKNGVG 329
Query: 73  LQRL---MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 129
            Q +    G +   ++SF Y      PIL  + L+IE  E VA VG+SG GKST +NL+ 
Sbjct: 330 AQPIEIKQGRIDIDHVSFQYNDNEA-PILKDINLSIEKGETVAFVGMSGGGKSTLINLIP 388
Query: 130 RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 189
           R Y+ + GQI IDG  + D     LR +IG V Q+  L    +K NI+ G P     E +
Sbjct: 389 RFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVV 448
Query: 190 EWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSA 247
           E AAK A  H+FI++LP GY+T V +    LSGGQKQR++IAR  L +P IL+LDEATSA
Sbjct: 449 E-AAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSA 507
Query: 248 LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELL 307
           LD ESE  ++  L  L  D    RT +++AHRLSTI                   H EL+
Sbjct: 508 LDLESESIIQEALDVLSKD----RTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELI 563
Query: 308 HKGRLYAKLVKRQT 321
            K   Y  L   Q 
Sbjct: 564 AKQGAYEHLYSIQN 577

>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582

Iteration: 1
 Score =  190 bits (483), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 112/278 (40%), Positives = 163/278 (58%), Gaps = 11/278 (3%)
Query: 46  QSIGATEKVFQLIDLLPSNQFLSEGVK-LQRLMGHVQFVNISFHYPSRPTVPILNHVCLT 104
           + + A + +F ++D   S Q   EG + + R  G ++F N++F YP R  VP L ++ L 
Sbjct: 310 RGMAACQTLFAILD---SEQEKDEGKRVIDRATGDLEFRNVTFTYPGRE-VPALRNINLK 365
Query: 105 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE 164
           I A + VA+VG SGSGKST  +L+ R Y+  +G I +DG  L +  +  LR ++  V Q 
Sbjct: 366 IPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQN 425
Query: 165 PQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQ 222
             L    + +NI Y   ++   E IE AA+ AY  +FI  +  G +T++ ++  LLSGGQ
Sbjct: 426 VHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQ 485
Query: 223 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST 282
           +QRIAIARA+LRD  IL+LDEATSALD+ESE  ++  L  L+ +    RT +VIAHRLST
Sbjct: 486 RQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKN----RTSLVIAHRLST 541
Query: 283 IKAXXXXXXXXXXXXXXXXNHAELLHKGRLYAKLVKRQ 320
           I+                  H+ELL +  +YA+L K Q
Sbjct: 542 IEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKMQ 579

>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582

Iteration: 1
 Score =  189 bits (481), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 112/278 (40%), Positives = 162/278 (58%), Gaps = 11/278 (3%)
Query: 46  QSIGATEKVFQLIDLLPSNQFLSEGVK-LQRLMGHVQFVNISFHYPSRPTVPILNHVCLT 104
           + + A + +F ++D   S Q   EG + ++R  G V+F N++F YP R  VP L ++ L 
Sbjct: 310 RGMAACQTLFTILD---SEQEKDEGKRVIERATGDVEFRNVTFTYPGRD-VPALRNINLK 365
Query: 105 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE 164
           I A + VA+VG SGSGKST  +L+ R Y+  +G+I +DG  L +  +  LR ++  V Q 
Sbjct: 366 IPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQN 425
Query: 165 PQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQ 222
             L    + +NI Y   +    E IE AA+ AY  +FI  +  G +T++ ++  LLSGGQ
Sbjct: 426 VHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQ 485
Query: 223 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST 282
           +QRIAIARA+LRD  IL+LDEATSALD+ESE  ++  L  L+ +    RT +VIAHRLST
Sbjct: 486 RQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKN----RTSLVIAHRLST 541
Query: 283 IKAXXXXXXXXXXXXXXXXNHAELLHKGRLYAKLVKRQ 320
           I+                  H +LL    +YA+L K Q
Sbjct: 542 IEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQLHKMQ 579

>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582

Iteration: 1
 Score =  181 bits (458), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 107/281 (38%), Positives = 156/281 (55%), Gaps = 9/281 (3%)
Query: 42  SSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHV 101
           S   + + A + +F L+DL       +   + +R+ G V   +++F Y  +   P L+HV
Sbjct: 306 SEFQRGMAACQTLFGLMDLETERD--NGKYEAERVNGEVDVKDVTFTYQGKEK-PALSHV 362
Query: 102 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 161
             +I   + VA+VG SGSGKST  NL  R Y+   G I +DG  + D  +  LR     V
Sbjct: 363 SFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALV 422
Query: 162 GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLS 219
            Q   L    I +NI Y    +   E IE AA+QA+  EFI ++P G +T++ ++   LS
Sbjct: 423 SQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLS 482
Query: 220 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHR 279
           GGQ+QR+AIARA+LRD  +L+LDEATSALD+ESE  ++  L  L+ +    +TV+VIAHR
Sbjct: 483 GGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKN----KTVLVIAHR 538
Query: 280 LSTIKAXXXXXXXXXXXXXXXXNHAELLHKGRLYAKLVKRQ 320
           LSTI+                  HA+LL +   YA+L + Q
Sbjct: 539 LSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHRIQ 579

>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260

Iteration: 1
 Score =  176 bits (447), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 96/245 (39%), Positives = 145/245 (59%), Gaps = 4/245 (1%)
Query: 76  LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 135
           L G VQF ++SF YP+RP V +L  +  T+   EV A+VG +GSGKST   LL  LY+P+
Sbjct: 11  LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT 70
Query: 136 DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQ 195
            GQ+ +DG PL   + R+L  ++  VGQEPQ+    ++ NI YG  +    E+I  AA +
Sbjct: 71  GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVK 130
Query: 196 AYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 253
           +  H FI  LP GY+T VD+    LSGGQ+Q +A+ARA++R P +L+LD+ATSALD+ S+
Sbjct: 131 SGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQ 190
Query: 254 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGRLY 313
             V+ +L+   +  +  R+V++I   LS ++                  H +L+ K   Y
Sbjct: 191 LQVEQLLY--ESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCY 248
Query: 314 AKLVK 318
             +V+
Sbjct: 249 WAMVQ 253

>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241

Iteration: 1
 Score =  176 bits (445), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 110/247 (44%), Positives = 145/247 (58%), Gaps = 11/247 (4%)
Query: 80  VQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 138
           + F NI F Y  +P  P IL+++ L+I+  EV+ IVG SGSGKST   L+ R Y P +GQ
Sbjct: 2   ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 139 IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYV 198
           + IDG  L   D  WLR ++G V Q+  LL   I  NI    P  +  E + +AAK A  
Sbjct: 60  VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAAKLAGA 118
Query: 199 HEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 256
           H+FI  L  GY T+V +    LSGGQ+QRIAIARA++ +P IL+ DEATSALD ESEH +
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 257 KGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGR-LYAK 315
              +H +   CK  RTVI+IAHRLST+K                  H ELL +   LY+ 
Sbjct: 179 MRNMHKI---CKG-RTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSY 234
Query: 316 LVKRQTE 322
           L + Q++
Sbjct: 235 LYQLQSD 241

>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247

Iteration: 1
 Score =  176 bits (445), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 110/247 (44%), Positives = 145/247 (58%), Gaps = 11/247 (4%)
Query: 80  VQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 138
           + F NI F Y  +P  P IL+++ L+I+  EV+ IVG SGSGKST   L+ R Y P +GQ
Sbjct: 8   ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 139 IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYV 198
           + IDG  L   D  WLR ++G V Q+  LL   I  NI    P  +  E + +AAK A  
Sbjct: 66  VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAAKLAGA 124
Query: 199 HEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 256
           H+FI  L  GY T+V +    LSGGQ+QRIAIARA++ +P IL+ DEATSALD ESEH +
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 257 KGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGR-LYAK 315
              +H +   CK  RTVI+IAHRLST+K                  H ELL +   LY+ 
Sbjct: 185 MRNMHKI---CKG-RTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSY 240
Query: 316 LVKRQTE 322
           L + Q++
Sbjct: 241 LYQLQSD 247

>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243

Iteration: 1
 Score =  175 bits (444), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 110/247 (44%), Positives = 145/247 (58%), Gaps = 11/247 (4%)
Query: 80  VQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 138
           + F NI F Y  +P  P IL+++ L+I+  EV+ IVG SGSGKST   L+ R Y P +GQ
Sbjct: 4   ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 61
Query: 139 IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYV 198
           + IDG  L   D  WLR ++G V Q+  LL   I  NI    P  +  E + +AAK A  
Sbjct: 62  VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAAKLAGA 120
Query: 199 HEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 256
           H+FI  L  GY T+V +    LSGGQ+QRIAIARA++ +P IL+ DEATSALD ESEH +
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 257 KGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGR-LYAK 315
              +H +   CK  RTVI+IAHRLST+K                  H ELL +   LY+ 
Sbjct: 181 MRNMHKI---CKG-RTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSY 236
Query: 316 LVKRQTE 322
           L + Q++
Sbjct: 237 LYQLQSD 243

>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247

Iteration: 1
 Score =  174 bits (442), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 109/247 (44%), Positives = 145/247 (58%), Gaps = 11/247 (4%)
Query: 80  VQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 138
           + F NI F Y  +P  P IL+++ L+I+  EV+ IVG SGSGKST   L+ R Y P +GQ
Sbjct: 8   ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 139 IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYV 198
           + IDG  L   D  WLR ++G V Q+  LL   I  NI    P  +  E + +AAK A  
Sbjct: 66  VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAAKLAGA 124
Query: 199 HEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 256
           H+FI  L  GY T+V +    LSGGQ+QRIAIARA++ +P IL+ D+ATSALD ESEH +
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVI 184
Query: 257 KGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGR-LYAK 315
              +H +   CK  RTVI+IAHRLST+K                  H ELL +   LY+ 
Sbjct: 185 MRNMHKI---CKG-RTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSY 240
Query: 316 LVKRQTE 322
           L + Q++
Sbjct: 241 LYQLQSD 247

>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243

Iteration: 1
 Score =  174 bits (441), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 109/247 (44%), Positives = 145/247 (58%), Gaps = 11/247 (4%)
Query: 80  VQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 138
           + F NI F Y  +P  P IL+++ L+I+  EV+ IVG +GSGKST   L+ R Y P +GQ
Sbjct: 4   ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQ 61
Query: 139 IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYV 198
           + IDG  L   D  WLR ++G V Q+  LL   I  NI    P  +  E + +AAK A  
Sbjct: 62  VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAAKLAGA 120
Query: 199 HEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 256
           H+FI  L  GY T+V +    LSGGQ+QRIAIARA++ +P IL+ DEATSALD ESEH +
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 257 KGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGR-LYAK 315
              +H +   CK  RTVI+IAHRLST+K                  H ELL +   LY+ 
Sbjct: 181 MRNMHKI---CKG-RTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSY 236
Query: 316 LVKRQTE 322
           L + Q++
Sbjct: 237 LYQLQSD 243

>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241

Iteration: 1
 Score =  172 bits (436), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 109/247 (44%), Positives = 144/247 (58%), Gaps = 11/247 (4%)
Query: 80  VQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 138
           + F NI F Y  +P  P IL+++ L+I+  EV+ IVG SGSGKST   L+ R Y P +GQ
Sbjct: 2   ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 139 IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYV 198
           + IDG  L   D  WLR ++G V Q+  LL   I  NI    P  +  E + +AAK A  
Sbjct: 60  VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAAKLAGA 118
Query: 199 HEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 256
           H+FI  L  GY T+V +    LSGGQ+QRIAIARA++ +P IL+ DEATSALD ESEH +
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 257 KGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGR-LYAK 315
              +H +   CK  RTVI+IA RLST+K                  H ELL +   LY+ 
Sbjct: 179 MRNMHKI---CKG-RTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSY 234
Query: 316 LVKRQTE 322
           L + Q++
Sbjct: 235 LYQLQSD 241

>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247

Iteration: 1
 Score =  172 bits (436), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 109/247 (44%), Positives = 144/247 (58%), Gaps = 11/247 (4%)
Query: 80  VQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 138
           + F NI F Y  +P  P IL+++ L+I+  EV+ IVG SGSGKST   L+ R Y P +GQ
Sbjct: 8   ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 139 IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYV 198
           + IDG  L   D  WLR ++G V Q+  LL   I  NI    P  +  E + +AAK A  
Sbjct: 66  VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAAKLAGA 124
Query: 199 HEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 256
           H+FI  L  GY T+V +    LSGGQ+QRIAIARA++ +P IL+ DEATSALD ESEH +
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 257 KGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGR-LYAK 315
              +H +   CK  RTVI+IA RLST+K                  H ELL +   LY+ 
Sbjct: 185 MRNMHKI---CKG-RTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSY 240
Query: 316 LVKRQTE 322
           L + Q++
Sbjct: 241 LYQLQSD 247

>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598

Iteration: 1
 Score =  165 bits (418), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 100/303 (33%), Positives = 162/303 (53%), Gaps = 10/303 (3%)
Query: 20  LTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGH 79
           +  ++ Y          + +  + +  ++ + E++F+++DL    +   + V+L+ + G 
Sbjct: 296 IATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDL-EEEKDDPDAVELREVRGE 354
Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           ++F N+ F Y  +   P+L  +   I+  + VA+VG +GSGK+T VNLL+R Y+   GQI
Sbjct: 355 IEFKNVWFSYDKKK--PVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQI 412
Query: 140 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVH 199
            +DG  +  +    LR  IG V Q+  L    +K N+ YG P    +E+I+ AAK  +  
Sbjct: 413 LVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNP-GATDEEIKEAAKLTHSD 471
Query: 200 EFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 257
            FI  LP GYET++ D+   LS GQ+Q +AI RA L +P IL+LDEATS +D+++E  ++
Sbjct: 472 HFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQ 531
Query: 258 GVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGRLYAKLV 317
             +  L       +T I+IAHRL+TIK                  H EL+ K   Y +L 
Sbjct: 532 AAMWKLMEG----KTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYELF 587
Query: 318 KRQ 320
             Q
Sbjct: 588 TSQ 590

>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271

Iteration: 1
 Score =  164 bits (416), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 89/245 (36%), Positives = 141/245 (57%), Gaps = 4/245 (1%)
Query: 76  LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 135
           + G V+F ++SF YP+ P V +L  +  T+   +V A+VG +GSGKST   LL  LY+P+
Sbjct: 13  MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 136 DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQ 195
            G++ +DG PL   D  +L  ++  VGQEP L     + NI YG  +    E+I   A +
Sbjct: 73  GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 196 AYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 253
           +  H+FI   P GY+T V +  + LSGGQ+Q +A+ARA++R P +L+LD+ATSALD+ ++
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQ 192
Query: 254 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGRLY 313
             V+ +L+   +     RTV++I H+LS  +                  H +L+ +G  Y
Sbjct: 193 LRVQRLLY--ESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCY 250
Query: 314 AKLVK 318
             +V+
Sbjct: 251 RSMVE 255

>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271

Iteration: 1
 Score =  160 bits (406), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 88/245 (35%), Positives = 139/245 (56%), Gaps = 4/245 (1%)
Query: 76  LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 135
           + G V+F ++SF YP+ P V +L  +  T+   +V A+VG +GSGKST   LL  LY+P+
Sbjct: 13  MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 136 DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQ 195
            G++ +DG PL   D  +L  ++  VGQEP L     + NI YG  +    E+I   A +
Sbjct: 73  GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 196 AYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 253
           +  H+FI   P GY+T V +  + LSGGQ+Q +A+ARA++R P +L+LD ATSALD+ ++
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192
Query: 254 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGRLY 313
             V+ +L+   +     RTV++I  +LS  +                  H +L+ +G  Y
Sbjct: 193 LRVQRLLY--ESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCY 250
Query: 314 AKLVK 318
             +V+
Sbjct: 251 RSMVE 255

>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243

Iteration: 1
 Score =  158 bits (400), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 90/226 (39%), Positives = 126/226 (55%), Gaps = 6/226 (2%)
Query: 97  ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 156
           IL  +    + N ++A  G SG GKST  +LL R Y+P+ G+I IDG P+ ++ +   R 
Sbjct: 17  ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRS 76
Query: 157 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD 216
           +IGFV Q+  ++   I+ N+ YG   D  +ED+      A+   F+ ++P    T V + 
Sbjct: 77  QIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGER 136
Query: 217 --LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 274
              +SGGQ+QR+AIARA LR+P IL+LDEAT++LDSESE  V+  L +L       RT +
Sbjct: 137 GVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK----GRTTL 192
Query: 275 VIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGRLYAKLVKRQ 320
           VIAHRLSTI                   H EL+    LYAK V  Q
Sbjct: 193 VIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQ 238

>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271

Iteration: 1
 Score =  155 bits (392), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 86/245 (35%), Positives = 138/245 (56%), Gaps = 4/245 (1%)
Query: 76  LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 135
           + G V+F ++SF YP+ P V +L  +  T+   +V A+VG +GSGKST   LL  LY+P+
Sbjct: 13  MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 136 DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQ 195
            G++ +DG PL   D  +L  ++  VGQEP L     + NI YG  +    E+I   A +
Sbjct: 73  GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 196 AYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 253
           +  H+FI   P GY+T V +  + L+ GQ+Q +A+ARA++R P +L+LD ATSALD+ ++
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192
Query: 254 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGRLY 313
             V+ +L+   +     RTV++I  +LS  +                  H +L+ +G  Y
Sbjct: 193 LRVQRLLY--ESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCY 250
Query: 314 AKLVK 318
             +V+
Sbjct: 251 RSMVE 255

>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306

Iteration: 1
 Score =  155 bits (392), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 97/242 (40%), Positives = 134/242 (55%), Gaps = 11/242 (4%)
Query: 78  GHVQFVNISFHYP-SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 136
           G ++F N+ F Y   R T   L  V  T+   + +A+VG SG+GKST + LL R Y+ S 
Sbjct: 52  GRIEFENVHFSYADGRET---LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISS 108
Query: 137 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQA 196
           G I IDG  ++ +    LR  IG V Q+  L    I  NI YG      N+++E AA+ A
Sbjct: 109 GCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVT-AGNDEVEAAAQAA 167
Query: 197 YVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 254
            +H+ I++ P GY T V +    LSGG+KQR+AIAR IL+ P I+LLDEATSALD+ +E 
Sbjct: 168 GIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNER 227
Query: 255 YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGRLYA 314
            ++  L  +   C   RT IV+AHRLST+                   H  LL +G +YA
Sbjct: 228 AIQASLAKV---C-ANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYA 283
Query: 315 KL 316
            +
Sbjct: 284 DM 285

>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260

Iteration: 1
 Score =  149 bits (376), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 89/245 (36%), Positives = 139/245 (56%), Gaps = 8/245 (3%)
Query: 79  HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 138
           +++F +++F YP +     L  +   I +    A+VG +GSGKST   LL R Y+ ++G 
Sbjct: 17  NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-AEGD 75
Query: 139 IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYV 198
           I I G  +   +   +R  IG V Q+  L    IK NI+YG   D  +E++  A K A +
Sbjct: 76  IKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYG-KLDATDEEVIKATKSAQL 134
Query: 199 HEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 256
           ++FI +LP  ++T+V +    LSGG++QRIAIAR +L+DP I++ DEATS+LDS++E+  
Sbjct: 135 YDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLF 194
Query: 257 KGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGRLYAKL 316
           +  +  LR +    RT+I+IAHRLSTI +                 H +LL     YA++
Sbjct: 195 QKAVEDLRKN----RTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEM 250
Query: 317 VKRQT 321
              Q+
Sbjct: 251 WNMQS 255

>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587

Iteration: 1
 Score =  144 bits (364), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 94/323 (29%), Positives = 172/323 (53%), Gaps = 9/323 (2%)
Query: 1   MAVL-LGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLID 59
           +AVL  GG+ +   Q+    +  Y  Y   ++++   + + L+ ++++  + ++V ++++
Sbjct: 262 IAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLN 321
Query: 60  LLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGS 119
             P+ +     + L  + G V F N+ F Y    T P+L+ V  +++   +VA++G +GS
Sbjct: 322 EKPAIEEADNALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGS 380
Query: 120 GKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYG 179
           GKST +NL+ RL +P  G++ +D   +  + ++ LR  I  V QE  L    IK N+ +G
Sbjct: 381 GKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWG 440
Query: 180 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPA 237
             +D  +++I  AAK A +H+FI+SLP GY++ V+      SGGQKQR++IARA+++ P 
Sbjct: 441 -REDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPK 499
Query: 238 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXX 297
           +L+LD+ TS++D  +E  +   L      C    T  +I  ++ T               
Sbjct: 500 VLILDDCTSSVDPITEKRILDGLKRYTKGC----TTFIITQKIPTALLADKILVLHEGKV 555
Query: 298 XXXXNHAELLHKGRLYAKLVKRQ 320
                H ELL   + Y ++ + Q
Sbjct: 556 AGFGTHKELLEHCKPYREIYESQ 578

>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242

Iteration: 1
 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/207 (34%), Positives = 108/207 (52%), Gaps = 13/207 (6%)
Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           +Q +++     S  ++ +L  + + I   EVV ++G SGSGKSTF+  L  L +  +G+I
Sbjct: 1   LQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI 60
Query: 140 YIDGFPLT--DLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQA 196
            IDG  L   D ++  +RE++G V Q   L   M + +NI    P  V+    +W  ++A
Sbjct: 61  IIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITL-APMKVR----KWPREKA 115
Query: 197 YVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 254
                 L    G +       D LSGGQ QR+AIARA+  +P I+L DE TSALD E   
Sbjct: 116 EAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVG 175
Query: 255 YVKGVLHALRNDCKTKRTVIVIAHRLS 281
            V  V+  L N+     T++V+ H + 
Sbjct: 176 EVLSVMKQLANEG---MTMVVVTHEMG 199

>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263

Iteration: 1
 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/207 (34%), Positives = 108/207 (52%), Gaps = 13/207 (6%)
Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           +Q +++     S  ++ +L  + + I   EVV ++G SGSGKSTF+  L  L +  +G+I
Sbjct: 22  LQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI 81
Query: 140 YIDGFPLT--DLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQA 196
            IDG  L   D ++  +RE++G V Q   L   M + +NI    P  V+    +W  ++A
Sbjct: 82  IIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITL-APMKVR----KWPREKA 136
Query: 197 YVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 254
                 L    G +       D LSGGQ QR+AIARA+  +P I+L DE TSALD E   
Sbjct: 137 EAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVG 196
Query: 255 YVKGVLHALRNDCKTKRTVIVIAHRLS 281
            V  V+  L N+     T++V+ H + 
Sbjct: 197 EVLSVMKQLANEG---MTMVVVTHEMG 220

>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343

Iteration: 1
 Score = 95.9 bits (237), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/214 (32%), Positives = 117/214 (54%), Gaps = 19/214 (8%)
Query: 80  VQFVNIS--FHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 137
           ++  NI+  FH  +R T+  LN+V L + A ++  ++G SG+GKST +  +  L  P++G
Sbjct: 2   IKLSNITKVFHQGTR-TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 60
Query: 138 QIYIDGFPLTDL---DIRWLREKIGFVGQEPQLLQMDIKSNIMYG---CPKDVKNEDIEW 191
            + +DG  LT L   ++   R +IG + Q   LL     S  ++G    P ++ N   + 
Sbjct: 61  SVLVDGQELTTLSESELTKARRQIGMIFQHFNLL----SSRTVFGNVALPLELDNTPKDE 116
Query: 192 AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 251
             ++  V E +  +  G +       LSGGQKQR+AIARA+  +P +LL DEATSALD  
Sbjct: 117 VKRR--VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPA 174
Query: 252 SEHYVKGVLHALRN-DCKTKRTVIVIAHRLSTIK 284
           +    + +L  L++ + +   T+++I H +  +K
Sbjct: 175 T---TRSILELLKDINRRLGLTILLITHEMDVVK 205

>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235

Iteration: 1
 Score = 95.5 bits (236), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 67/201 (33%), Positives = 111/201 (55%), Gaps = 25/201 (12%)
Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRW 153
           L +V L I+  E V+I+G SGSGKST +N++  L +P++G++YID     DLD     + 
Sbjct: 21  LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 154 LREKIGFVGQEPQLLQM-----DIKSNIMYGCPKDVKNEDIEWAA----KQAYVHE-FIL 203
            R+KIGFV Q+  L+ +     +++  +++     +  E+    A    K A + E F  
Sbjct: 81  RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFAN 140
Query: 204 SLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 263
             P         + LSGGQ+QR+AIARA+  +P I+L D+ T ALDS++   +  +L  L
Sbjct: 141 HKP---------NQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKL 191
Query: 264 RNDCKTKRTVIVIAHRLSTIK 284
             +    +TV+V+ H ++  +
Sbjct: 192 NEE--DGKTVVVVTHDINVAR 210

>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235

Iteration: 1
 Score = 95.5 bits (236), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/201 (33%), Positives = 109/201 (54%), Gaps = 25/201 (12%)
Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRW 153
           L +V L I+  E V+I G SGSGKST +N++  L +P++G++YID     DLD     + 
Sbjct: 21  LKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 154 LREKIGFVGQEPQLLQM-----DIKSNIMYGCPKDVKNEDIEWAA----KQAYVHE-FIL 203
            R+KIGFV Q+  L+ +     +++  +++        E+    A    K A + E F  
Sbjct: 81  RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAELEERFAN 140
Query: 204 SLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 263
             P         + LSGGQ+QR+AIARA+  +P I+L DE T ALDS++   +  +L  L
Sbjct: 141 HKP---------NQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKL 191
Query: 264 RNDCKTKRTVIVIAHRLSTIK 284
             +    +TV+V+ H ++  +
Sbjct: 192 NEE--DGKTVVVVTHDINVAR 210

>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 118/220 (53%), Gaps = 26/220 (11%)
Query: 80  VQFVNISFHYP-SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 138
           V+  N++  Y      +  L +V L I+  E V+I+G SGSGKST +N++  L +P++G+
Sbjct: 2   VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 139 IYIDGFPLTDLD----IRWLREKIGFVGQEPQLLQM-----DIKSNIMYGCPKDVKNEDI 189
           +YID     DLD     +  R+KIGFV Q+  L+ +     +++  +++     +  E+ 
Sbjct: 62  VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 190 EWAA----KQAYVHE-FILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEA 244
              A    K A + E F    P         + LSGGQ+QR+AIARA+  +P I+L D+ 
Sbjct: 122 RKRALECLKMAELEERFANHKP---------NQLSGGQQQRVAIARALANNPPIILADQP 172
Query: 245 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK 284
           T ALDS++   +  +L  L  +    +TV+V+ H ++  +
Sbjct: 173 TWALDSKTGEKIMQLLKKLNEE--DGKTVVVVTHDINVAR 210

>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/214 (30%), Positives = 118/214 (55%), Gaps = 19/214 (8%)
Query: 80  VQFVNIS--FHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 137
           ++  NI+  FH  +R T+  LN+V L + A ++  ++G SG+GKST +  +  L  P++G
Sbjct: 25  IKLSNITKVFHQGTR-TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 83
Query: 138 QIYIDGFPLTDL---DIRWLREKIGFVGQEPQLLQMDIKSNIMYG---CPKDVKNEDIEW 191
            + +DG  LT L   ++   R +IG + Q   LL     S  ++G    P ++ N   + 
Sbjct: 84  SVLVDGQELTTLSESELTKARRQIGMIFQHFNLL----SSRTVFGNVALPLELDNTPKDE 139
Query: 192 AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 251
             ++      ++ L   +++   +  LSGGQKQR+AIARA+  +P +LL D+ATSALD  
Sbjct: 140 VKRRVTELLSLVGLGDKHDSYPSN--LSGGQKQRVAIARALASNPKVLLCDQATSALDPA 197
Query: 252 SEHYVKGVLHALRN-DCKTKRTVIVIAHRLSTIK 284
           +    + +L  L++ + +   T+++I H +  +K
Sbjct: 198 T---TRSILELLKDINRRLGLTILLITHEMDVVK 228

>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366

Iteration: 1
 Score = 91.3 bits (225), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 66/214 (30%), Positives = 117/214 (54%), Gaps = 19/214 (8%)
Query: 80  VQFVNIS--FHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 137
           ++  NI+  FH  +R T+  LN+V L + A ++  ++G SG+GKST +  +  L  P++G
Sbjct: 25  IKLSNITKVFHQGTR-TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 83
Query: 138 QIYIDGFPLTDL---DIRWLREKIGFVGQEPQLLQMDIKSNIMYG---CPKDVKNEDIEW 191
            + +DG  LT L   ++   R +IG + Q   LL     S  ++G    P ++ N   + 
Sbjct: 84  SVLVDGQELTTLSESELTKARRQIGXIFQHFNLL----SSRTVFGNVALPLELDNTPKDE 139
Query: 192 AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 251
             ++      ++ L   +++   +  LSGGQKQR+AIARA+  +P +LL D+ATSALD  
Sbjct: 140 VKRRVTELLSLVGLGDKHDSYPSN--LSGGQKQRVAIARALASNPKVLLCDQATSALDPA 197
Query: 252 SEHYVKGVLHALRN-DCKTKRTVIVIAHRLSTIK 284
           +    + +L  L++ + +   T+++I H    +K
Sbjct: 198 T---TRSILELLKDINRRLGLTILLITHEXDVVK 228

>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348

Iteration: 1
 Score = 88.6 bits (218), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 100/184 (54%), Gaps = 16/184 (8%)
Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 157
           L+++ L +E+ E   I+G +G+GK+ F+ L+   + P  G+I +DG  +TDL     +  
Sbjct: 16  LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHD 73
Query: 158 IGFVGQEPQLL-QMDIKSNIMYGCP-KDVKN-EDIEWAAKQAYVHEFILSLPCGYETLVD 214
           I FV Q   L   M++K N+ +G   K +K+ + +   A+   +   +   P        
Sbjct: 74  IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPL------- 126
Query: 215 DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 274
              LSGG++QR+A+ARA++ +P ILLLDE  SALD  ++   + +L  L    K K TV+
Sbjct: 127 --TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHK--KNKLTVL 182
Query: 275 VIAH 278
            I H
Sbjct: 183 HITH 186

>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373

Iteration: 1
 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 99/190 (52%), Gaps = 25/190 (13%)
Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 157
           +N + LTI+  E + ++G SG GK+T + ++  L EP++G+IY       D D+ +L  K
Sbjct: 28  VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY-----FGDRDVTYLPPK 82
Query: 158 ---IGFVGQEPQLL-QMDIKSNIMYGC-----PKDVKNEDIEWAAKQAYVHEFILSLPCG 208
              I  V Q   +   M +  NI +       PKD  ++ + WAA+   + E +   P  
Sbjct: 83  DRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQ 142
Query: 209 YETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCK 268
                    LSGGQ+QR+A+ARAI+ +P +LL+DE  S LD++    ++  +  L+   K
Sbjct: 143 ---------LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ--K 191
Query: 269 TKRTVIVIAH 278
            K T I + H
Sbjct: 192 LKVTTIYVTH 201

>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372

Iteration: 1
 Score = 85.5 bits (210), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 99/190 (52%), Gaps = 25/190 (13%)
Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 157
           +N + LTI+  E + ++G SG GK+T + ++  L EP++G+IY       D D+ +L  K
Sbjct: 27  VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY-----FGDRDVTYLPPK 81
Query: 158 ---IGFVGQEPQLL-QMDIKSNIMYGC-----PKDVKNEDIEWAAKQAYVHEFILSLPCG 208
              I  V Q   +   M +  NI +       PKD  ++ + WAA+   + E +   P  
Sbjct: 82  DRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQ 141
Query: 209 YETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCK 268
                    LSGGQ+QR+A+ARAI+ +P +LL+DE  S LD++    ++  +  L+   K
Sbjct: 142 ---------LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ--K 190
Query: 269 TKRTVIVIAH 278
            K T I + H
Sbjct: 191 LKVTTIYVTH 200

>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362

Iteration: 1
 Score = 85.5 bits (210), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 99/187 (52%), Gaps = 19/187 (10%)
Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 157
           LN++ L I+  E +A++G SGSGKST +  +  +Y+P+ G+IY D   +T+L  +     
Sbjct: 19  LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRN 76
Query: 158 IGFVGQEPQLL-QMDIKSNIMY-----GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET 211
           +G V Q   L   M +  NI +       P++  ++ +   AK  ++ + +   P     
Sbjct: 77  VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQ--- 133
Query: 212 LVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 271
                 LSGGQ+QR+AIARA++++P +LLLDE  S LD+     V+  L  L+ +     
Sbjct: 134 ------LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGI-- 185
Query: 272 TVIVIAH 278
           T + + H
Sbjct: 186 TTVYVTH 192

>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 88/178 (49%), Gaps = 19/178 (10%)
Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           ++FV +   YP       +  V   I   E+V ++G SGSGK+T + L+  L  P+ G +
Sbjct: 15  IEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 140 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNIMYG-----CPKDVKNEDIEWAA 193
           +I G  +TDL  +  +  +G V Q   L Q M +  N+ +G      PKD  +  +    
Sbjct: 73  WIGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELL 130
Query: 194 KQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 251
           +   +  +    P           LSGGQ+QR+A+ARA+   P +LL DE  +A+D++
Sbjct: 131 RFMRLESYANRFP---------HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179

>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224

Iteration: 1
 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 104/192 (54%), Gaps = 22/192 (11%)
Query: 97  ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL---TDLDIRW 153
           IL  + L+++  E V+I+G SGSGKST + +L  L  P++G+++++G  +    + ++  
Sbjct: 19  ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 154 LR-EKIGFVGQE----PQLLQMD--IKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLP 206
           LR  K+GFV Q     P+L  ++  I   +  G PK    E  E+   +  + + +   P
Sbjct: 79  LRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKP 138
Query: 207 CGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 266
             YE       LSGG++QR+AIARA+  +P +L  DE T  LDS +   V  +   + N+
Sbjct: 139 --YE-------LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKI-NE 188
Query: 267 CKTKRTVIVIAH 278
             T  +++++ H
Sbjct: 189 GGT--SIVMVTH 198

>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 102/213 (47%), Gaps = 17/213 (7%)
Query: 77  MGHVQFVNIS--FHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP 134
           MG ++ VN+S  FH  +      L +V L I   E + + G +GSGKST + ++  L EP
Sbjct: 2   MGRIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP 61
Query: 135 SDGQIYIDGFPLTDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCPKDVKNEDIEWA 192
           + G +  DG      +IR     IG   Q P  Q     +   + +       + D    
Sbjct: 62  TSGDVLYDGERKKGYEIR---RNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPL 118
Query: 193 AKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 250
            K+A   EF+      +++  D     LSGG+K+R+AIA  I+ +P IL+LDE    LD 
Sbjct: 119 VKKAM--EFV---GLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDR 173
Query: 251 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 283
           E +  +  ++   +      +TVI+I+H + T+
Sbjct: 174 EGKTDLLRIVEKWKT---LGKTVILISHDIETV 203

>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 78.2 bits (191), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 105/206 (50%), Gaps = 20/206 (9%)
Query: 79  HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 138
            ++  ++SF Y       +L  V    E  ++  +VG +GSGK+T + +L  L   + G+
Sbjct: 11  RIELNSVSFRYNGDY---VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAA-GE 66
Query: 139 IYIDGFPLTDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQA 196
           I++DG P    D   LR+ +G+V Q P  Q++   ++ ++ +   + +  ++ E   +  
Sbjct: 67  IFLDGSPA---DPFLLRKNVGYVFQNPSSQIIGATVEEDVAFSL-EIMGLDESEMRKRIK 122
Query: 197 YVHEFILSLPCGYETLVDDDLL--SGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 254
            V E +     G   L   D L  SGGQKQR+AIA  + RD   L LDE  S LD  S+ 
Sbjct: 123 KVLELV-----GLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQR 177
Query: 255 YVKGVLHALRNDCKTKRTVIVIAHRL 280
            +  VL +L+N+ K    +I++ H L
Sbjct: 178 EIFQVLESLKNEGK---GIILVTHEL 200

>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 101/200 (50%), Gaps = 26/200 (13%)
Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD---LDIRWL 154
           L++V + IE  E   I+G SG+GK+TF+ ++  L  PS G++Y D   +     L +   
Sbjct: 21  LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 155 REKIGFVGQE----PQLLQMDIKSNIMY-----GCPKDVKNEDIEWAAKQAYVHEFILSL 205
             KIG V Q     P L   +   NI +        K+   + +E  AK   +H  +   
Sbjct: 81  DRKIGMVFQTWALYPNLTAFE---NIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHF 137
Query: 206 PCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRN 265
           P           LSGGQ+QR+A+ARA+++DP++LLLDE  S LD+      + ++  +++
Sbjct: 138 PRE---------LSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188
Query: 266 DCKTKRTVIVIAHRLSTIKA 285
                 T++V++H  + I A
Sbjct: 189 RLGV--TLLVVSHDPADIFA 206

>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275

Iteration: 1
 Score = 75.1 bits (183), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 96/197 (48%), Gaps = 24/197 (12%)
Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL--TDLDIRWLR 155
           L  + + I+  EV AI+G +G GKST       + +PS G+I  D  P+  +   I  LR
Sbjct: 24  LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 156 EKIGFVGQEP--QLLQMDIKSNIMYGC-----PKDVKNEDIEWAAKQAYVHEFILSLPCG 208
           E IG V Q+P  QL    +  ++ +G      P+D   + ++ A K+            G
Sbjct: 84  ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKR-----------TG 132
Query: 209 YETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 266
            E L D     LS GQK+R+AIA  ++ +P +L+LDE T+ LD      +  +L  ++ +
Sbjct: 133 IEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKE 192
Query: 267 CKTKRTVIVIAHRLSTI 283
                T+I+  H +  +
Sbjct: 193 LGI--TIIIATHDIDIV 207

>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 100/211 (47%), Gaps = 17/211 (8%)
Query: 79  HVQFVNIS--FHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 136
            ++ VN+S  FH  +      L +V L I   E + + G +GSGKST + ++  L EP+ 
Sbjct: 2   RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 137 GQIYIDGFPLTDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCPKDVKNEDIEWAAK 194
           G +  DG      +IR     IG   Q P  Q     +   + +       + D     K
Sbjct: 62  GDVLYDGERKKGYEIR---RNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVK 118
Query: 195 QAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 252
           +A   EF+      +++  D     LSGG+K+R+AIA  I+ +P IL+LDE    LD E 
Sbjct: 119 KAM--EFV---GLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREG 173
Query: 253 EHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 283
           +  +  ++   +      +TVI+I+H + T+
Sbjct: 174 KTDLLRIVEKWKT---LGKTVILISHDIETV 201

>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 92/180 (51%), Gaps = 20/180 (11%)
Query: 77  MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 136
           M  ++ VN+  ++     V  ++ V   ++  E VA++G SG GK+T + +L  +Y+P+ 
Sbjct: 1   MPSIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTS 57
Query: 137 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYG-----CPKDVKNEDIE 190
           G+IY D   + D+  ++   ++G V Q   L   M +  NI +        KD   + + 
Sbjct: 58  GEIYFDDVLVNDIPPKY--REVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVV 115
Query: 191 WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 250
             A++  +   +   P           LSGGQ+QR+A+ARA+++ P +LL DE  S LD+
Sbjct: 116 EIARKLLIDNLLDRKPTQ---------LSGGQQQRVALARALVKQPKVLLFDEPLSNLDA 166

>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 100/200 (50%), Gaps = 26/200 (13%)
Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD---LDIRWL 154
           L++V + IE  E   I+G SG+GK+TF+ ++  L  PS G++Y D   +     L +   
Sbjct: 21  LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 155 REKIGFVGQE----PQLLQMDIKSNIMY-----GCPKDVKNEDIEWAAKQAYVHEFILSL 205
             KIG V Q     P L   +   NI +        K+   + +E  AK   +H  +   
Sbjct: 81  DRKIGMVFQTWALYPNLTAFE---NIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHF 137
Query: 206 PCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRN 265
           P           LSG Q+QR+A+ARA+++DP++LLLDE  S LD+      + ++  +++
Sbjct: 138 PRE---------LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188
Query: 266 DCKTKRTVIVIAHRLSTIKA 285
                 T++V++H  + I A
Sbjct: 189 RLGV--TLLVVSHDPADIFA 206

>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 114/253 (45%), Gaps = 37/253 (14%)
Query: 77  MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 136
           M  +   N +F + +R   P LN +  +I    +VA+VG  G GKS+ ++ LL   +  +
Sbjct: 1   MNSITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVE 59
Query: 137 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQA 196
           G + I G              + +V Q+  +    ++ NI++GC        +E    ++
Sbjct: 60  GHVAIKG-------------SVAYVPQQAWIQNDSLRENILFGC-------QLEEPYYRS 99
Query: 197 YVHEFIL-----SLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALD 249
            +    L      LP G  T + +    LSGGQKQR+++ARA+  +  I L D+  SA+D
Sbjct: 100 VIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVD 159
Query: 250 SE-SEHYVKGVLHA---LRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAE 305
           +   +H  + V+     L+N     +T I++ H +S +                  ++ E
Sbjct: 160 AHVGKHIFENVIGPKGMLKN-----KTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQE 214
Query: 306 LLHKGRLYAKLVK 318
           LL +   +A+ ++
Sbjct: 215 LLARDGAFAEFLR 227

>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
Query: 84  NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 143
           N+SF +      P+L ++ L IE  E++AI G +GSGK++ + L+L   E S+G I   G
Sbjct: 40  NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 144 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFIL 203
                        ++ F  Q   ++   IK NI++G   D      +   K   + + I 
Sbjct: 100 -------------RVSFCSQFSWIMPGTIKENIIFGVSYD--EYRYKSVVKACQLQQDIT 144
Query: 204 SLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 256
                  T++ +    LSGGQ+ RI++ARA+ +D  + LLD     LD  +E  V
Sbjct: 145 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 199

>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
Query: 84  NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 143
           N+SF +      P+L ++ L IE  E++AI G +GSGK++ + L+L   E S+G I   G
Sbjct: 40  NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 144 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFIL 203
                        ++ F  Q   ++   IK NI++G   D      +   K   + + I 
Sbjct: 100 -------------RVSFCSQFSWIMPGTIKENIIFGVSYD--EYRYKSVVKACQLQQDIT 144
Query: 204 SLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 256
                  T++ +    LSGGQ+ RI++ARA+ +D  + LLD     LD  +E  V
Sbjct: 145 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 199

>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 92/189 (48%), Gaps = 9/189 (4%)
Query: 97  ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 156
           IL ++  +I   + V ++G +GSGKST ++  LRL   ++G+I IDG     + +   R+
Sbjct: 36  ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRK 94
Query: 157 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD 216
             G + Q+  +     + N+         +++I   A +  +   I   P   + ++ D 
Sbjct: 95  AFGVIPQKVFIFSGTFRKNLDPNAAH--SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDG 152
Query: 217 --LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 274
             +LS G KQ + +AR++L    ILLLDE ++ LD  +   ++  L     DC    TVI
Sbjct: 153 GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADC----TVI 208
Query: 275 VIAHRLSTI 283
           +   R+  +
Sbjct: 209 LCEARIEAM 217

>pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 87/176 (49%), Gaps = 26/176 (14%)
Query: 105 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE 164
           I+  EV+ IVG +G GK+TFV  L  + EP++G+I  D   LT             V  +
Sbjct: 309 IKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWD---LT-------------VAYK 352
Query: 165 PQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL--LSGGQ 222
           PQ ++ D +  +     K      I+ +   +  ++  L  P G   L D ++  LSGG+
Sbjct: 353 PQYIKADYEGTVYELLSK------IDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGE 406
Query: 223 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH 278
            QR+AIA  +LRD  I LLDE ++ LD E    V   +  L    K ++T +V+ H
Sbjct: 407 LQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXE--KNEKTALVVEH 460

>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 83/175 (47%), Gaps = 17/175 (9%)
Query: 84  NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 143
           N+SF +      P+L ++ L IE  E++AI G +GSGK++ + L+L   E S+G I   G
Sbjct: 40  NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 144 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFIL 203
                        ++ F  Q   ++   IK NI+ G   D      +   K   + + I 
Sbjct: 100 -------------RVSFCSQFSWIMPGTIKENIIRGVSYD--EYRYKSVVKACQLQQDIT 144
Query: 204 SLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 256
                  T++ +    LSGGQ+ RI++ARA+ +D  + LLD     LD  +E  V
Sbjct: 145 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 199

>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 83/175 (47%), Gaps = 17/175 (9%)
Query: 84  NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 143
           N+SF +      P+L ++ L IE  E++AI G +GSGK++ + L+L   E S+G I   G
Sbjct: 40  NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 144 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFIL 203
                        ++ F  Q   ++   IK NI+ G   D      +   K   + + I 
Sbjct: 100 -------------RVSFCSQFSWIMPGTIKENIISGVSYD--EYRYKSVVKACQLQQDIT 144
Query: 204 SLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 256
                  T++ +    LSGGQ+ RI++ARA+ +D  + LLD     LD  +E  V
Sbjct: 145 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 199

>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 87/176 (49%), Gaps = 26/176 (14%)
Query: 105 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE 164
           I   EV+ IVG +G GK+TFV +L  + EP++G++  D   LT             V  +
Sbjct: 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD---LT-------------VAYK 422
Query: 165 PQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL--LSGGQ 222
           PQ ++ + +  +     K      I+ +   +  ++  L  P G   L D ++  LSGG+
Sbjct: 423 PQYIKAEYEGTVYELLSK------IDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGE 476
Query: 223 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH 278
            QR+AIA  +LRD  I LLDE ++ LD E    V   +  L    K ++T +V+ H
Sbjct: 477 LQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLME--KNEKTALVVEH 530

>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 87/176 (49%), Gaps = 26/176 (14%)
Query: 105 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE 164
           I   EV+ IVG +G GK+TFV +L  + EP++G++  D   LT             V  +
Sbjct: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD---LT-------------VAYK 408
Query: 165 PQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL--LSGGQ 222
           PQ ++ + +  +     K      I+ +   +  ++  L  P G   L D ++  LSGG+
Sbjct: 409 PQYIKAEYEGTVYELLSK------IDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGE 462
Query: 223 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH 278
            QR+AIA  +LRD  I LLDE ++ LD E    V   +  L    K ++T +V+ H
Sbjct: 463 LQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLME--KNEKTALVVEH 516

>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 82/151 (54%), Gaps = 17/151 (11%)
Query: 113 IVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMD 171
           ++G +G+GKS F+ L+  + +P  G++ ++G  +T L     R  IGFV Q+  L   + 
Sbjct: 29  LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPHLS 86
Query: 172 IKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIA 229
           +  NI YG    ++N        +       ++   G   L+D     LSGG++QR+A+A
Sbjct: 87  VYRNIAYG----LRN----VERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALA 138
Query: 230 RAILRDPAILLLDEATSALDSESEHYVKGVL 260
           RA++  P +LLLDE  SA+D ++    KGVL
Sbjct: 139 RALVIQPRLLLLDEPLSAVDLKT----KGVL 165

>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 101/206 (49%), Gaps = 33/206 (16%)
Query: 97  ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT---DLD--- 150
           +L  V L   A +V++I+G SGSGKSTF+  +  L +PS+G I ++G  +    D D   
Sbjct: 21  VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 151 -------IRWLREKIGFVGQEPQL-LQMDIKSNIM------YGCPK-DVKNEDIEWAAKQ 195
                  +R LR ++  V Q   L   M +  N+M       G  K D +   +++ AK 
Sbjct: 81  KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKV 140
Query: 196 AYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHY 255
                     P           LSGGQ+QR++IARA+  +P +LL DE TSALD E    
Sbjct: 141 GIDERAQGKYPVH---------LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPE---L 188
Query: 256 VKGVLHALRNDCKTKRTVIVIAHRLS 281
           V  VL  ++   +  +T++V+ H + 
Sbjct: 189 VGEVLRIMQQLAEEGKTMVVVTHEMG 214

>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 18/175 (10%)
Query: 84  NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 143
           N+SF +      P+L ++ L IE  E++AI G +GSGK++ + L+L   E S+G I   G
Sbjct: 40  NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 144 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFIL 203
                        ++ F  Q   ++   IK NI+     + + + +    K   + + I 
Sbjct: 100 -------------RVSFCSQFSWIMPGTIKENIIGVSYDEYRYKSV---VKACQLQQDIT 143
Query: 204 SLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 256
                  T++ +    LSGGQ+ RI++ARA+ +D  + LLD     LD  +E  V
Sbjct: 144 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 198

>pdb|1G29|1 Chain 1, Malk Length = 372

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 92/192 (47%), Gaps = 17/192 (8%)
Query: 95  VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID----GFPLTDLD 150
           V  +  + L ++  E + ++G SG GK+T + ++  L EPS GQIYI       P   + 
Sbjct: 16  VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIF 75
Query: 151 IRWLREKIGFVGQEPQLL-QMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCG 208
           +      I  V Q   L   M +  NI +    + V  ++I+   ++  V E +     G
Sbjct: 76  VPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVRE--VAELL-----G 128
Query: 209 YETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 266
              L++     LSGGQ+QR+A+ RAI+R P + L+DE  S LD++    ++  L  L+  
Sbjct: 129 LTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQ 188
Query: 267 CKTKRTVIVIAH 278
                T I + H
Sbjct: 189 LGV--TTIYVTH 198

>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 90/194 (46%), Gaps = 24/194 (12%)
Query: 95  VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL 154
            P+L  +   IE  +++A+ G +G+GK++ + +++   EPS+G+I   G           
Sbjct: 33  TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----------- 81
Query: 155 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 214
             +I F  Q   ++   IK NI++G   D          K   + E I         ++ 
Sbjct: 82  --RISFCSQFSWIMPGTIKENIIFGVSYD--EYRYRSVIKACQLEEDISKFAEKDNIVLG 137
Query: 215 DD--LLSGGQKQRIAIARAILRDPAILLLDEATSALD--SESEHYVKGVLHALRNDCKTK 270
           +    LSGGQ+ RI++ARA+ +D  + LLD     LD  +E E +   V   + N     
Sbjct: 138 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN----- 192
Query: 271 RTVIVIAHRLSTIK 284
           +T I++  ++  +K
Sbjct: 193 KTRILVTSKMEHLK 206

>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 109/208 (52%), Gaps = 24/208 (11%)
Query: 79  HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 138
           H+  ++ SF        P+LN + L+++  E++ I+G SG GK+T +  L    +P  G+
Sbjct: 6   HIGHLSKSFQ-----NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGE 60
Query: 139 IYIDGFPL----TDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAA 193
           I + G  +    T+L +R  R  +G++ QE  L   + +  NI YG    + N     A 
Sbjct: 61  ISLSGKTIFSKNTNLPVRERR--LGYLVQEGVLFPHLTVYRNIAYG----LGNGKGRTAQ 114
Query: 194 KQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 251
           ++  + E +L L  G   L       LSGGQ+QR A+ARA+  DP ++LLDE  SALD +
Sbjct: 115 ERQRI-EAMLEL-TGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQ 172
Query: 252 SEHYVK-GVLHALRNDCKTKRTVIVIAH 278
               ++  ++ ALR + K   + + ++H
Sbjct: 173 LRRQIREDMIAALRANGK---SAVFVSH 197

>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 90/194 (46%), Gaps = 24/194 (12%)
Query: 95  VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL 154
            P+L  +   IE  +++A+ G +G+GK++ + +++   EPS+G+I   G           
Sbjct: 21  TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----------- 69
Query: 155 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 214
             +I F  Q   ++   IK NI++G   D          K   + E I         ++ 
Sbjct: 70  --RISFCSQFSWIMPGTIKENIIFGVSYD--EYRYRSVIKACQLEEDISKFAEKDNIVLG 125
Query: 215 DD--LLSGGQKQRIAIARAILRDPAILLLDEATSALD--SESEHYVKGVLHALRNDCKTK 270
           +    LSGGQ+ RI++ARA+ +D  + LLD     LD  +E E +   V   + N     
Sbjct: 126 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN----- 180
Query: 271 RTVIVIAHRLSTIK 284
           +T I++  ++  +K
Sbjct: 181 KTRILVTSKMEHLK 194

>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 94/205 (45%), Gaps = 24/205 (11%)
Query: 84  NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 143
           ++SF   S    P+L  +   IE  +++A+ G +G+GK++ + +++   EPS+G+I   G
Sbjct: 40  SLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 99
Query: 144 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFIL 203
                        +I F  Q   ++   IK NI+ G   D          K   + E I 
Sbjct: 100 -------------RISFCSQFSWIMPGTIKENIIAGVSYDEYR--YRSVIKACQLEEDIS 144
Query: 204 SLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALD--SESEHYVKGV 259
                   ++ +    LSGGQ+ RI++ARA+ +D  + LLD     LD  +E E +   V
Sbjct: 145 KFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 204
Query: 260 LHALRNDCKTKRTVIVIAHRLSTIK 284
              + N     +T I++  ++  +K
Sbjct: 205 CKLMAN-----KTRILVTSKMEHLK 224

>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 85/177 (48%), Gaps = 17/177 (9%)
Query: 94  TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS----DGQIYIDGFPLTDL 149
           T+   + + L I  N V AIVG S SGKST +  + +   P+     G++   G  L  +
Sbjct: 20  TIKAADGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTM 79
Query: 150 ------DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQ--AYVHEF 201
                  IRW  ++I  V Q  Q   ++    ++      V+   + W+  +      E 
Sbjct: 80  REEELRKIRW--KEIALVPQAAQQ-SLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEK 136
Query: 202 ILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 256
           +  +    E +++     LSGG KQR+ IA A+L DP +L+LDE TSALD  ++ ++
Sbjct: 137 LRMVRLNPEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHI 193

>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 92/208 (44%), Gaps = 22/208 (10%)
Query: 77  MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 136
           M  VQ  N++  +     V +   + L I   E V  VG SG GKST + ++  L   + 
Sbjct: 1   MASVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITS 57
Query: 137 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYG-----CPKDVKNEDIE 190
           G ++I    + D         +G V Q   L   + +  N+ +G       K+V N+ + 
Sbjct: 58  GDLFIGEKRMNDTP--PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVN 115
Query: 191 WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 250
             A+   +   +   P           LSGGQ+QR+AI R ++ +P++ LLDE  S LD+
Sbjct: 116 QVAEVLQLAHLLDRKP---------KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA 166
Query: 251 ESEHYVKGVLHALRNDCKTKRTVIVIAH 278
                V+  +   R   +  RT+I + H
Sbjct: 167 ALR--VQMRIEISRLHKRLGRTMIYVTH 192

>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 92/208 (44%), Gaps = 22/208 (10%)
Query: 77  MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 136
           M  VQ  N++  +     V +   + L I   E V  VG SG GKST + ++  L   + 
Sbjct: 1   MASVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITS 57
Query: 137 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYG-----CPKDVKNEDIE 190
           G ++I    + D         +G V Q   L   + +  N+ +G       K+V N+ + 
Sbjct: 58  GDLFIGEKRMNDTP--PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVN 115
Query: 191 WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 250
             A+   +   +   P           LSGGQ+QR+AI R ++ +P++ LLDE  S LD+
Sbjct: 116 QVAEVLQLAHLLDRKPKA---------LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA 166
Query: 251 ESEHYVKGVLHALRNDCKTKRTVIVIAH 278
                V+  +   R   +  RT+I + H
Sbjct: 167 ALR--VQMRIEISRLHKRLGRTMIYVTH 192

>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266

Iteration: 1
 Score = 60.8 bits (146), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 77/160 (48%), Gaps = 13/160 (8%)
Query: 97  ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 156
           ++N V L I + E+VAI+G +G+GKST + LL     PS G+ ++ G  L     + L  
Sbjct: 26  LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALAR 85
Query: 157 KIGFVGQEPQL-LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD 215
               + Q  +L     +   I  G      ++D     +QA + + +    C      D 
Sbjct: 86  TRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQD-----RQA-LQQVMAQTDCLALAQRDY 139
Query: 216 DLLSGGQKQRIAIARAILR------DPAILLLDEATSALD 249
            +LSGG++QR+ +AR + +       P  L LDE TSALD
Sbjct: 140 RVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALD 179

>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 93/216 (43%), Gaps = 44/216 (20%)
Query: 84  NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 143
           N+ F+Y +     +   +   +   +++A++G +G GKST ++LLL ++ P  G+I +  
Sbjct: 9   NLGFYYQAENF--LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV-- 64
Query: 144 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFIL 203
                       + IGFV Q              +  P      DI    +  +++ F  
Sbjct: 65  -----------YQSIGFVPQ-------------FFSSPFAYSVLDIVLMGRSTHINTFAK 100
Query: 204 SLPCGYETLVD--DDL------------LSGGQKQRIAIARAILRDPAILLLDEATSALD 249
                Y+  +   D L            LSGGQ+Q I IARAI  +  ++LLDE TSALD
Sbjct: 101 PKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALD 160
Query: 250 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA 285
             ++  V  +L  L        TV+   H+ + + A
Sbjct: 161 LANQDIVLSLLIDLAQS--QNMTVVFTTHQPNQVVA 194

>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 101/206 (49%), Gaps = 32/206 (15%)
Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 157
           L+ V +++   +V  I+G +GSGKST +N++    +  +G++Y +   +T+ +   L   
Sbjct: 23  LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH- 81
Query: 158 IGFVG--QEPQ-LLQMDIKSNIMYG--CPKD-----------VKNEDIEWAAKQAYVHEF 201
            G V   Q PQ L +M +  N++ G  CP +           +  E+ E   K   + EF
Sbjct: 82  YGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEE-EMVEKAFKILEF 140
Query: 202 ILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLH 261
            L L   Y+    +  LSGGQ + + I RA++ +P ++++DE  + +         G+ H
Sbjct: 141 -LKLSHLYDRKAGE--LSGGQMKLVEIGRALMTNPKMIVMDEPIAGV-------APGLAH 190
Query: 262 ALRN---DCKTKR-TVIVIAHRLSTI 283
            + N   + K K  T ++I HRL  +
Sbjct: 191 DIFNHVLELKAKGITFLIIEHRLDIV 216

>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 97/207 (46%), Gaps = 29/207 (14%)
Query: 84  NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 143
           ++SF   S    P+L  +   IE  +++A+ G +G+GK++ + +++   EPS+G+I   G
Sbjct: 40  SLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 99
Query: 144 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAA--KQAYVHEF 201
                        +I F  Q   ++   IK NI+      V  ++  + +  K   + E 
Sbjct: 100 -------------RISFCSQNSWIMPGTIKENII-----GVSYDEYRYRSVIKACQLEED 141
Query: 202 ILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALD--SESEHYVK 257
           I         ++ +    LSGGQ+ RI++ARA+ +D  + LLD     LD  +E E +  
Sbjct: 142 ISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFES 201
Query: 258 GVLHALRNDCKTKRTVIVIAHRLSTIK 284
            V   + N     +T I++  ++  +K
Sbjct: 202 CVCKLMAN-----KTRILVTSKMEHLK 223

>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 92/208 (44%), Gaps = 22/208 (10%)
Query: 77  MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 136
           M  VQ  N++  +     V +   + L I   E V  VG SG GKST + ++  L   + 
Sbjct: 1   MASVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITS 57
Query: 137 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYG-----CPKDVKNEDIE 190
           G ++I    + D         +G V Q   L   + +  N+ +G       K+V N+ + 
Sbjct: 58  GDLFIGEKRMNDTP--PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVN 115
Query: 191 WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 250
             A+   +   +   P           LSGGQ+QR+AI R ++ +P++ LLD+  S LD+
Sbjct: 116 QVAEVLQLAHLLDRKP---------KALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDA 166
Query: 251 ESEHYVKGVLHALRNDCKTKRTVIVIAH 278
                V+  +   R   +  RT+I + H
Sbjct: 167 ALR--VQMRIEISRLHKRLGRTMIYVTH 192

>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 92/196 (46%), Gaps = 29/196 (14%)
Query: 95  VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL 154
            P+L  +   IE  +++A+ G +G+GK++ + +++   EPS+G+I   G           
Sbjct: 51  TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----------- 99
Query: 155 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAA--KQAYVHEFILSLPCGYETL 212
             +I F  Q   ++   IK NI+      V  ++  + +  K   + E I         +
Sbjct: 100 --RISFCSQNSWIMPGTIKENII-----GVSYDEYRYRSVIKACQLEEDISKFAEKDNIV 152
Query: 213 VDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALD--SESEHYVKGVLHALRNDCK 268
           + +    LSGGQ+ RI++ARA+ +D  + LLD     LD  +E E +   V   + N   
Sbjct: 153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN--- 209
Query: 269 TKRTVIVIAHRLSTIK 284
             +T I++  ++  +K
Sbjct: 210 --KTRILVTSKMEHLK 223

>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 86/194 (44%), Gaps = 21/194 (10%)
Query: 95  VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD---- 150
           V  +  + L I+  E + ++G SG GK+T +  +  L EP+ GQIYI+   + D +    
Sbjct: 19  VTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVF 78
Query: 151 IRWLREKIGFVGQEPQLL-QMDIKSNIMY-----GCPKDVKNEDIEWAAKQAYVHEFILS 204
           +      +  V Q   L     +  NI +       PK   ++ +   A+   + E +  
Sbjct: 79  VPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELLNR 138
Query: 205 LPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALR 264
            P           LSGGQ+QR+A+ RAI+R P + L DE  S LD++     +  L  L+
Sbjct: 139 KPRE---------LSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQ 189
Query: 265 NDCKTKRTVIVIAH 278
                  T I + H
Sbjct: 190 RQLGV--TTIYVTH 201

>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 90/194 (46%), Gaps = 25/194 (12%)
Query: 95  VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL 154
            P+L  +   IE  +++A+ G +G+GK++ + +++   EPS+G+I   G           
Sbjct: 21  TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----------- 69
Query: 155 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 214
             +I F  Q   ++   IK NI+     + +   +    K   + E I         ++ 
Sbjct: 70  --RISFCSQFSWIMPGTIKENIIGVSYDEYRYRSV---IKACQLEEDISKFAEKDNIVLG 124
Query: 215 DD--LLSGGQKQRIAIARAILRDPAILLLDEATSALD--SESEHYVKGVLHALRNDCKTK 270
           +    LSGGQ+ RI++ARA+ +D  + LLD     LD  +E E +   V   + N     
Sbjct: 125 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN----- 179
Query: 271 RTVIVIAHRLSTIK 284
           +T I++  ++  +K
Sbjct: 180 KTRILVTSKMEHLK 193

>pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291

Iteration: 1
 Score = 57.4 bits (137), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 89/194 (45%), Gaps = 24/194 (12%)
Query: 95  VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL 154
            P+L  +   IE  +++A+ G +G+GK++ + +++   EPS+G+I   G           
Sbjct: 51  TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----------- 99
Query: 155 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 214
             +I F  Q   ++   IK NI++G   D          K   + E I         ++ 
Sbjct: 100 --RISFCSQFSWIMPGTIKENIIFGVSYDEYR--YRSVIKACQLEEDISKFAEKDNIVLG 155
Query: 215 DD--LLSGGQKQRIAIARAILRDPAILLLDEATSALD--SESEHYVKGVLHALRNDCKTK 270
           +    LS GQ+ +I++ARA+ +D  + LLD     LD  +E E +   V   + N     
Sbjct: 156 EGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN----- 210
Query: 271 RTVIVIAHRLSTIK 284
           +T I++  ++  +K
Sbjct: 211 KTRILVTSKMEHLK 224

>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 101/210 (48%), Gaps = 40/210 (19%)
Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 157
           L+ V +++   +V  I+G +GSGKST +N++    +  +G++Y +   +T+ +   L   
Sbjct: 23  LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH- 81
Query: 158 IGFVG--QEPQ-LLQMDIKSNIMYG-----------------CPKDVKNEDIEWAAKQAY 197
            G V   Q PQ L +M +  N++ G                  PK+   E +E A K   
Sbjct: 82  YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKE--EEMVEKAFK--- 136
Query: 198 VHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 257
           + EF L L   Y+    +  LSGGQ + + I RA++ +P ++++D+  + +         
Sbjct: 137 ILEF-LKLSHLYDRKAGE--LSGGQMKLVEIGRALMTNPKMIVMDQPIAGV-------AP 186
Query: 258 GVLHALRN---DCKTKR-TVIVIAHRLSTI 283
           G+ H + N   + K K  T ++I HRL  +
Sbjct: 187 GLAHDIFNHVLELKAKGITFLIIEHRLDIV 216

>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 101/210 (48%), Gaps = 40/210 (19%)
Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 157
           L+ V +++   +V  I+G +GSGKST +N++    +  +G++Y +   +T+ +   L   
Sbjct: 23  LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH- 81
Query: 158 IGFVG--QEPQ-LLQMDIKSNIMYG-----------------CPKDVKNEDIEWAAKQAY 197
            G V   Q PQ L +M +  N++ G                  PK+   E +E A K   
Sbjct: 82  YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKE--EEMVEKAFK--- 136
Query: 198 VHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 257
           + EF L L   Y+    +  LSGGQ + + I RA++ +P ++++DE  + +         
Sbjct: 137 ILEF-LKLSHLYDRKAGE--LSGGQMKLVEIGRALMTNPKMIVMDEPIAGV-------AP 186
Query: 258 GVLHALRN---DCKTKR-TVIVIAHRLSTI 283
           G+ H + N   + K K  T ++I HRL  +
Sbjct: 187 GLAHDIFNHVLELKAKGITFLIIEHRLDIV 216

>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 90/184 (48%), Gaps = 32/184 (17%)
Query: 97  ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR--WL 154
           +LN   L ++      I G +G GKST +  +      ++GQ+  DGFP T  + R  ++
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAI------ANGQV--DGFP-TQEECRTVYV 500
Query: 155 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 214
              I     +  +L    +S +  G  + +K++ IE+     +  E I ++P        
Sbjct: 501 EHDIDGTHSDTSVLDFVFESGV--GTKEAIKDKLIEFG----FTDEMI-AMPIS------ 547
Query: 215 DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 274
              LSGG K ++A+ARA+LR+  ILLLDE T+ LD+ +  ++   L    N C    T I
Sbjct: 548 --ALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYL----NTCGI--TSI 599
Query: 275 VIAH 278
            I+H
Sbjct: 600 TISH 603

>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 91/196 (46%), Gaps = 29/196 (14%)
Query: 95  VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL 154
            P+L  +   IE  +++A+ G +G+GK++ + +++   EPS+G+I   G           
Sbjct: 51  TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----------- 99
Query: 155 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAA--KQAYVHEFILSLPCGYETL 212
             +I F  Q   ++   IK NI+      V  ++  + +  K   + E I         +
Sbjct: 100 --RISFCSQFSWIMPGTIKENII-----GVSYDEYRYRSVIKACQLEEDISKFAEKDNIV 152
Query: 213 VDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALD--SESEHYVKGVLHALRNDCK 268
           + +    LS GQ+ +I++ARA+ +D  + LLD     LD  +E E +   V   + N   
Sbjct: 153 LGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN--- 209
Query: 269 TKRTVIVIAHRLSTIK 284
             +T I++  ++  +K
Sbjct: 210 --KTRILVTSKMEHLK 223

>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 93/191 (48%), Gaps = 29/191 (15%)
Query: 96  PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 155
           P+L  + +TIE   VV   G +G GK+T +  +    +P  G+I  +G P+T      ++
Sbjct: 23  PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVK 77
Query: 156 EKIGFVGQE---PQLLQMD--IKS-NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGY 209
            KI F+ +E   P+ + ++  +K+   +YG    V   +I  A +   V +    L    
Sbjct: 78  GKIFFLPEEIIVPRKISVEDYLKAVASLYGVK--VNKNEIMDALESVEVLDLKKKLGE-- 133
Query: 210 ETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV-KGVLHALRNDCK 268
                   LS G  +R+ +A  +L +  I +LD+   A+D +S+H V K +L  L+    
Sbjct: 134 --------LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILK---- 181
Query: 269 TKRTVIVIAHR 279
            ++ +++I+ R
Sbjct: 182 -EKGIVIISSR 191

>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 77/156 (49%), Gaps = 26/156 (16%)
Query: 97  ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR--WL 154
           +LN   L ++      I G +G GKST    +      ++GQ+  DGFP T  + R  ++
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLXRAI------ANGQV--DGFP-TQEECRTVYV 500
Query: 155 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 214
              I     +  +L    +S +  G  + +K++ IE+     +  E I + P        
Sbjct: 501 EHDIDGTHSDTSVLDFVFESGV--GTKEAIKDKLIEFG----FTDEXI-AXPIS------ 547
Query: 215 DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 250
              LSGG K ++A+ARA+LR+  ILLLDE T+ LD+
Sbjct: 548 --ALSGGWKXKLALARAVLRNADILLLDEPTNHLDT 581

>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 77/156 (49%), Gaps = 26/156 (16%)
Query: 97  ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR--WL 154
           +LN   L ++      I G +G GKST    +      ++GQ+  DGFP T  + R  ++
Sbjct: 444 LLNKTQLRLKRARRYGICGPNGCGKSTLXRAI------ANGQV--DGFP-TQEECRTVYV 494
Query: 155 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 214
              I     +  +L    +S +  G  + +K++ IE+     +  E I + P        
Sbjct: 495 EHDIDGTHSDTSVLDFVFESGV--GTKEAIKDKLIEFG----FTDEXI-AXPIS------ 541
Query: 215 DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 250
              LSGG K ++A+ARA+LR+  ILLLDE T+ LD+
Sbjct: 542 --ALSGGWKXKLALARAVLRNADILLLDEPTNHLDT 575

>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 88/190 (46%), Gaps = 19/190 (10%)
Query: 97  ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD------ 150
           IL  +   IE  E+  ++G +G+GK+T + ++  L +PS G + + G  + +        
Sbjct: 30  ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKL 89
Query: 151 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE 210
           I +L E+ G       +  +   +        +++ E +E A + A + E I      Y 
Sbjct: 90  ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIE-EMVERATEIAGLGEKIKDRVSTY- 147
Query: 211 TLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTK 270
                   S G  +++ IARA++ +P + +LDE TS LD  +   V+ +   L+   +  
Sbjct: 148 --------SKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKI---LKQASQEG 196
Query: 271 RTVIVIAHRL 280
            T++V +H +
Sbjct: 197 LTILVSSHNM 206

>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 80/172 (46%), Gaps = 33/172 (19%)
Query: 97  ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYIDGFPLTDL--DIRW 153
           IL  +   I   +   + GL+G+GK+T +N+L   YEP + G + + G     +      
Sbjct: 36  ILKKISWQIAKGDKWILYGLNGAGKTTLLNIL-NAYEPATSGTVNLFGKXPGKVGYSAET 94
Query: 154 LREKIGFVG-------QEPQ-----LLQMDIKSNIMYGCPKD-VKNED---IEWAAKQAY 197
           +R+ IGFV        QE +     ++    KS  +Y    D ++NE    ++     A 
Sbjct: 95  VRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGXSAK 154
Query: 198 VHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 249
             ++I     GY        LS G+KQR+ IARA+   P +L+LDE  + LD
Sbjct: 155 AQQYI-----GY--------LSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193

>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 85/198 (42%), Gaps = 29/198 (14%)
Query: 86  SFHYPSRPTVP---ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 142
           +F YPS        +LN        +E++ ++G +G+GK+T + LL    +P +GQ    
Sbjct: 353 AFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQ---- 408
Query: 143 GFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFI 202
             P  ++ ++  +    F G   QL    I+   +        N   +    +       
Sbjct: 409 DIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFL--------NPQFQTDVVK------- 453
Query: 203 LSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL 260
              P   + ++D ++  LSGG+ QR+AI  A+     I L+DE ++ LDSE       V+
Sbjct: 454 ---PLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVI 510
Query: 261 HALRNDCKTKRTVIVIAH 278
              R     K+T  ++ H
Sbjct: 511 R--RFILHNKKTAFIVEH 526

>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 18/159 (11%)
Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-RE 156
           +  + L +   ++V ++G +G+GK+T ++ +  L     G+I  +G  +T+     + R 
Sbjct: 22  IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRX 81
Query: 157 KIGFVGQEPQLL-QMDIKSNIMYGC----PKDVKNEDIEWAAKQAYVHEFILSL-PCGYE 210
            I  V +  ++  ++ +  N+  G      K+    D+EW          I SL P   E
Sbjct: 82  GIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRDLEW----------IFSLFPRLKE 131
Query: 211 TLVD-DDLLSGGQKQRIAIARAILRDPAILLLDEATSAL 248
            L      LSGG++Q +AI RA+   P +L  DE +  L
Sbjct: 132 RLKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGL 170

>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 85/194 (43%), Gaps = 18/194 (9%)
Query: 97  ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL--RLYEPSDGQIYIDGFPLTDLDIR-W 153
           IL  + L +   EV AI+G +GSGKST    L     YE + G +   G  L  L     
Sbjct: 35  ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 94
Query: 154 LREKIGFVGQEPQ---------LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILS 204
             E I    Q P           LQ  + +   Y   + +   D +   ++      +L 
Sbjct: 95  AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIA---LLK 151
Query: 205 LPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALR 264
           +P    T   +   SGG+K+R  I +  + +P + +LDE+ S LD ++   V   +++LR
Sbjct: 152 MPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLR 211
Query: 265 NDCKTKRTVIVIAH 278
           +    KR+ I++ H
Sbjct: 212 D---GKRSFIIVTH 222

>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 85/194 (43%), Gaps = 18/194 (9%)
Query: 97  ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL--RLYEPSDGQIYIDGFPLTDLDIR-W 153
           IL  + L +   EV AI+G +GSGKST    L     YE + G +   G  L  L     
Sbjct: 16  ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 75
Query: 154 LREKIGFVGQEPQ---------LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILS 204
             E I    Q P           LQ  + +   Y   + +   D +   ++      +L 
Sbjct: 76  AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIA---LLK 132
Query: 205 LPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALR 264
           +P    T   +   SGG+K+R  I +  + +P + +LDE+ S LD ++   V   +++LR
Sbjct: 133 MPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLR 192
Query: 265 NDCKTKRTVIVIAH 278
           +    KR+ I++ H
Sbjct: 193 D---GKRSFIIVTH 203

>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 14/156 (8%)
Query: 103 LTIEAN-EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 161
           + +E N E V I+G +GSGK+T +  +  L  P  G I+I+G     +++R +R  I + 
Sbjct: 24  INLEVNGEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFING-----MEVRKIRNYIRYS 77
Query: 162 GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL-LSG 220
              P+  ++ +  N +    +++K  D      +    E + +L  G E L      LS 
Sbjct: 78  TNLPEAYEIGVTVNDIVYLYEELKGLD------RDLFLEMLKALKLGEEILRRKLYKLSA 131
Query: 221 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 256
           GQ   +  + A+   P I+ LDE    +D+   H +
Sbjct: 132 GQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVI 167

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	325
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	1e-144
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	1e-139
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	1e-129
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	1e-127
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	1e-126
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	1e-125
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	1e-123
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	1e-122
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	1e-119
2ghi_A	260	Transport protein; multidrug resistance protein, M	1e-115
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	1e-109
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	4e-98
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	4e-82
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	2e-60
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	3e-45
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	3e-44
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	6e-44
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	1e-43
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	4e-43
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	2e-42
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	3e-42
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	4e-42
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	8e-42
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	1e-41
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	4e-40
1b0u_A	262	Histidine permease; ABC transporter, transport pro	4e-39
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	1e-37
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	2e-34
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	1e-36
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	2e-35
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	6e-33
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	2e-35
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	1e-33
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	7e-35
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	1e-32
1sgw_A	214	Putative ABC transporter; structural genomics, P p	4e-34
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	6e-32
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	1e-30
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	2e-28
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	5e-28
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	1e-27
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	1e-26
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	2e-26
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	2e-26
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	9e-26
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	2e-25
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	5e-25
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	1e-23
1g6h_A	257	High-affinity branched-chain amino acid transport	3e-20
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	4e-18
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	5e-14
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	7e-07
1ji0_A	240	ABC transporter; ATP binding protein, structural g	7e-15
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	2e-13
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	8e-13
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	2e-11
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	8e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	1e-05
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	1e-04
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	1e-04
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	2e-04
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	4e-04
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	4e-04
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	4e-04
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	5e-04
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	6e-04
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	6e-04

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271

 Score =  393 bits (1013), Expect = e-139
 Identities = 94/259 (36%), Positives = 149/259 (57%), Gaps = 4/259 (1%)

Query: 67  LSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVN 126
           LS  +    + G V+F ++SF YP+ P V +L  +  T+   +V A+VG +GSGKST   
Sbjct: 4   LSGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAA 63

Query: 127 LLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKN 186
           LL  LY+P+ G++ +DG PL   D  +L  ++  VGQEP L     + NI YG  +    
Sbjct: 64  LLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTM 123

Query: 187 EDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEA 244
           E+I   A ++  H+FI   P GY+T V +  + LSGGQ+Q +A+ARA++R P +L+LD A
Sbjct: 124 EEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNA 183

Query: 245 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHA 304
           TSALD+ ++  V+ +L+         RTV++I  +LS  +    I+ + +G + E G H 
Sbjct: 184 TSALDAGNQLRVQRLLYESPE--WASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHL 241

Query: 305 ELLHKGRLYAKLVKRQTES 323
           +L+ +G  Y  +V+     
Sbjct: 242 QLMERGGCYRSMVEALAAP 260

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score =  397 bits (1021), Expect = e-129
 Identities = 146/326 (44%), Positives = 194/326 (59%), Gaps = 32/326 (9%)

Query: 1   MAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDL 60
            +VL+G  S+  GQ SP                      N+ +   + GA  +VF++ID 
Sbjct: 332 FSVLIGAFSV--GQASP----------------------NIEAFANARGAAYEVFKIIDN 367

Query: 61  LPS-NQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGS 119
            PS + F   G K   + G+++F NI F YPSR  V IL  + L +++ + VA+VG SG 
Sbjct: 368 KPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGC 427

Query: 120 GKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYG 179
           GKST V L+ RLY+P DG + IDG  +  +++R+LRE IG V QEP L    I  NI YG
Sbjct: 428 GKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYG 487

Query: 180 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPA 237
              DV  ++IE A K+A  ++FI+ LP  ++TLV +    LSGGQKQRIAIARA++R+P 
Sbjct: 488 RE-DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPK 546

Query: 238 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI 297
           ILLLDEATSALD+ESE     V  AL    +  RT IVIAHRLST++  D I   D G I
Sbjct: 547 ILLLDEATSALDTESE---AVVQAALDKARE-GRTTIVIAHRLSTVRNADVIAGFDGGVI 602

Query: 298 IEVGNHAELLHKGRLYAKLVKRQTES 323
           +E GNH EL+ +  +Y KLV  QT  
Sbjct: 603 VEQGNHDELMREKGIYFKLVMTQTAG 628

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score =  391 bits (1006), Expect = e-127
 Identities = 135/333 (40%), Positives = 191/333 (57%), Gaps = 18/333 (5%)

Query: 1    MAVLL--GGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIG----ATEKV 54
             A     G   +    ++ E +         +++     V  +SS          +   +
Sbjct: 949  YAAAFRFGAYLVTQQLMTFENVLLVFSA---IVFGAM-AVGQVSSFAPDYAKATVSASHI 1004

Query: 55   FQLIDLLPSNQFLS-EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAI 113
             ++I+  P     S +G+K   L G+VQF  + F+YP+RP++P+L  + L ++  + +A+
Sbjct: 1005 IRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLAL 1064

Query: 114  VGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIK 173
            VG SG GKST V LL R Y+P  G +++DG  +  L+++WLR ++G V QEP L    I 
Sbjct: 1065 VGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIA 1124

Query: 174  SNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIAR 230
             NI YG   + V  E+I  AAK+A +H+FI SLP  Y T V D    LSGGQKQRIAIAR
Sbjct: 1125 ENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIAR 1184

Query: 231  AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIV 290
            A++R P ILLLDEATSALD+ESE   K V  AL    +  RT IVIAHRLSTI+  D IV
Sbjct: 1185 ALVRQPHILLLDEATSALDTESE---KVVQEALDKARE-GRTCIVIAHRLSTIQNADLIV 1240

Query: 291  VIDDGRIIEVGNHAELLHKGRLYAKLVKRQTES 323
            VI +G++ E G H +LL +  +Y  +V  Q  +
Sbjct: 1241 VIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAGA 1273

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score =  373 bits (959), Expect = e-126
 Identities = 118/320 (36%), Positives = 181/320 (56%), Gaps = 9/320 (2%)

Query: 3   VLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLP 62
           +       ++  ++   +T        L+     + +  +   + + A + +F ++D   
Sbjct: 267 LYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQ 326

Query: 63  SNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKS 122
                     + R  G ++F N++F YP R   P L ++ L I A + VA+VG SGSGKS
Sbjct: 327 EKD--EGKRVIDRATGDLEFRNVTFTYPGREV-PALRNINLKIPAGKTVALVGRSGSGKS 383

Query: 123 TFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK 182
           T  +L+ R Y+  +G I +DG  L +  +  LR ++  V Q   L    + +NI Y   +
Sbjct: 384 TIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTE 443

Query: 183 DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILL 240
           +   E IE AA+ AY  +FI  +  G +T++ ++  LLSGGQ+QRIAIARA+LRD  IL+
Sbjct: 444 EYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILI 503

Query: 241 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEV 300
           LDEATSALD+ESE  ++  L  L+ +    RT +VIAHRLSTI+  D IVV++DG I+E 
Sbjct: 504 LDEATSALDTESERAIQAALDELQKN----RTSLVIAHRLSTIEQADEIVVVEDGIIVER 559

Query: 301 GNHAELLHKGRLYAKLVKRQ 320
           G H+ELL +  +YA+L K Q
Sbjct: 560 GTHSELLAQHGVYAQLHKMQ 579

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score =  368 bits (948), Expect = e-125
 Identities = 120/321 (37%), Positives = 184/321 (57%), Gaps = 11/321 (3%)

Query: 3   VLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQS-IGATEKVFQLIDLL 61
           + L  +  +  +++P   T       + +    + + +++S  Q  + A + +F L+DL 
Sbjct: 267 LFLASVDSIRAELTPGTFTVVFSAM-FGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLE 325

Query: 62  PSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGK 121
                 +   + +R+ G V   +++F Y  +   P L+HV  +I   + VA+VG SGSGK
Sbjct: 326 TERD--NGKYEAERVNGEVDVKDVTFTYQGKEK-PALSHVSFSIPQGKTVALVGRSGSGK 382

Query: 122 STFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP 181
           ST  NL  R Y+   G I +DG  + D  +  LR     V Q   L    I +NI Y   
Sbjct: 383 STIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAE 442

Query: 182 KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAIL 239
            +   E IE AA+QA+  EFI ++P G +T++ ++   LSGGQ+QR+AIARA+LRD  +L
Sbjct: 443 GEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVL 502

Query: 240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIE 299
           +LDEATSALD+ESE  ++  L  L+ +    +TV+VIAHRLSTI+  D I+V+D+G IIE
Sbjct: 503 ILDEATSALDTESERAIQAALDELQKN----KTVLVIAHRLSTIEQADEILVVDEGEIIE 558

Query: 300 VGNHAELLHKGRLYAKLVKRQ 320
            G HA+LL +   YA+L + Q
Sbjct: 559 RGRHADLLAQDGAYAQLHRIQ 579

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247

 Score =  352 bits (906), Expect = e-123
 Identities = 114/252 (45%), Positives = 153/252 (60%), Gaps = 9/252 (3%)

Query: 74  QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE 133
                 + F NI F Y       IL+++ L+I+  EV+ IVG SGSGKST   L+ R Y 
Sbjct: 2   HHHHHDITFRNIRFRYKPDSP-VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 60

Query: 134 PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAA 193
           P +GQ+ IDG  L   D  WLR ++G V Q+  LL   I  NI    P  +  E + +AA
Sbjct: 61  PENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAA 119

Query: 194 KQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 251
           K A  H+FI  L  GY T+V +    LSGGQ+QRIAIARA++ +P IL+ DEATSALD E
Sbjct: 120 KLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 179

Query: 252 SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGR 311
           SEH +   +H +       RTVI+IAHRLST+K  DRI+V++ G+I+E G H ELL +  
Sbjct: 180 SEHVIMRNMHKICKG----RTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPE 235

Query: 312 -LYAKLVKRQTE 322
            LY+ L + Q++
Sbjct: 236 SLYSYLYQLQSD 247

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243

 Score =  350 bits (900), Expect = e-122
 Identities = 98/243 (40%), Positives = 140/243 (57%), Gaps = 8/243 (3%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           +   ++ F Y       IL  +    + N ++A  G SG GKST  +LL R Y+P+ G+I
Sbjct: 2   LSARHVDFAYDDSE--QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59

Query: 140 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVH 199
            IDG P+ ++ +   R +IGFV Q+  ++   I+ N+ YG   D  +ED+      A+  
Sbjct: 60  TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119

Query: 200 EFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 257
            F+ ++P    T V +    +SGGQ+QR+AIARA LR+P IL+LDEAT++LDSESE  V+
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179

Query: 258 GVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 317
             L +L       RT +VIAHRLSTI   D+I  I+ G+I   G H EL+    LYAK V
Sbjct: 180 KALDSLMKG----RTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYV 235

Query: 318 KRQ 320
             Q
Sbjct: 236 SEQ 238

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578

 Score =  353 bits (908), Expect = e-119
 Identities = 131/320 (40%), Positives = 184/320 (57%), Gaps = 8/320 (2%)

Query: 3   VLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLP 62
           + +G    + G ++   L  +V Y E L     R+V + ++L QS  + ++VFQLID   
Sbjct: 263 IGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDY 322

Query: 63  SNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKS 122
             +       ++   G +   ++SF Y      PIL  + L+IE  E VA VG+SG GKS
Sbjct: 323 DIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEA-PILKDINLSIEKGETVAFVGMSGGGKS 381

Query: 123 TFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK 182
           T +NL+ R Y+ + GQI IDG  + D     LR +IG V Q+  L    +K NI+ G P 
Sbjct: 382 TLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRP- 440

Query: 183 DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILL 240
              +E++  AAK A  H+FI++LP GY+T V +    LSGGQKQR++IAR  L +P IL+
Sbjct: 441 TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILI 500

Query: 241 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEV 300
           LDEATSALD ESE  ++  L  L  D    RT +++AHRLSTI   D+IVVI++G I+E 
Sbjct: 501 LDEATSALDLESESIIQEALDVLSKD----RTTLIVAHRLSTITHADKIVVIENGHIVET 556

Query: 301 GNHAELLHKGRLYAKLVKRQ 320
           G H EL+ K   Y  L   Q
Sbjct: 557 GTHRELIAKQGAYEHLYSIQ 576

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260

 Score =  333 bits (857), Expect = e-115
 Identities = 95/258 (36%), Positives = 153/258 (59%), Gaps = 8/258 (3%)

Query: 68  SEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNL 127
           S     ++   +++F +++F YP +     L  +   I +    A+VG +GSGKST   L
Sbjct: 6   SLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKL 65

Query: 128 LLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNE 187
           L R Y+  +G I I G  +   +   +R  IG V Q+  L    IK NI+YG   D  +E
Sbjct: 66  LYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKL-DATDE 123

Query: 188 DIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEAT 245
           ++  A K A +++FI +LP  ++T+V +    LSGG++QRIAIAR +L+DP I++ DEAT
Sbjct: 124 EVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEAT 183

Query: 246 SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAE 305
           S+LDS++E+  +  +  LR +    RT+I+IAHRLSTI + + I++++ G+I+E G H +
Sbjct: 184 SSLDSKTEYLFQKAVEDLRKN----RTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKD 239

Query: 306 LLHKGRLYAKLVKRQTES 323
           LL     YA++   Q+  
Sbjct: 240 LLKLNGEYAEMWNMQSGG 257

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score =  319 bits (819), Expect = e-109
 Identities = 110/280 (39%), Positives = 154/280 (55%), Gaps = 9/280 (3%)

Query: 46  QSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTI 105
                 E +F L+      + L     L+   G ++F N+ F Y        L  V  T+
Sbjct: 20  HMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSY--ADGRETLQDVSFTV 77

Query: 106 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEP 165
              + +A+VG SG+GKST + LL R Y+ S G I IDG  ++ +    LR  IG V Q+ 
Sbjct: 78  MPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDT 137

Query: 166 QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQK 223
            L    I  NI YG      N+++E AA+ A +H+ I++ P GY T V +    LSGG+K
Sbjct: 138 VLFNDTIADNIRYGRV-TAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEK 196

Query: 224 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 283
           QR+AIAR IL+ P I+LLDEATSALD+ +E     +  +L   C   RT IV+AHRLST+
Sbjct: 197 QRVAIARTILKAPGIILLDEATSALDTSNERA---IQASLAKVCAN-RTTIVVAHRLSTV 252

Query: 284 KAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTES 323
              D+I+VI DG I+E G H  LL +G +YA + + Q   
Sbjct: 253 VNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQQGQ 292

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598

 Score =  300 bits (771), Expect = 4e-98
 Identities = 112/320 (35%), Positives = 179/320 (55%), Gaps = 12/320 (3%)

Query: 4   LLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQS-IGATEKVFQLIDLLP 62
             GG   +   ++   +  ++ Y           + N  +++Q  + + E++F+++DL  
Sbjct: 280 GFGGWLALKDIITVGTIATFIGYS-RQFTRPLNELSNQFNMIQMALASAERIFEILDL-E 337

Query: 63  SNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKS 122
             +   + V+L+ + G ++F N+ F Y      P+L  +   I+  + VA+VG +GSGK+
Sbjct: 338 EEKDDPDAVELREVRGEIEFKNVWFSY--DKKKPVLKDITFHIKPGQKVALVGPTGSGKT 395

Query: 123 TFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK 182
           T VNLL+R Y+   GQI +DG  +  +    LR  IG V Q+  L    +K N+ YG P 
Sbjct: 396 TIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNP- 454

Query: 183 DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILL 240
              +E+I+ AAK  +   FI  LP GYET++ D+   LS GQ+Q +AI RA L +P IL+
Sbjct: 455 GATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILI 514

Query: 241 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEV 300
           LDEATS +D+++E  ++  +  L       +T I+IAHRL+TIK  D I+V+ DG I+E+
Sbjct: 515 LDEATSNVDTKTEKSIQAAMWKLMEG----KTSIIIAHRLNTIKNADLIIVLRDGEIVEM 570

Query: 301 GNHAELLHKGRLYAKLVKRQ 320
           G H EL+ K   Y +L   Q
Sbjct: 571 GKHDELIQKRGFYYELFTSQ 590

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587

 Score =  259 bits (663), Expect = 4e-82
 Identities = 103/324 (31%), Positives = 183/324 (56%), Gaps = 11/324 (3%)

Query: 1   MAVL-LGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLL-QSIGATEKVFQLI 58
           +AVL  GG+ +   Q+    +  Y  Y    I  +  M+ N+ + + ++  + ++V +++
Sbjct: 262 IAVLWFGGVLVRNNQMEIGSIMAYTNYL-MQIMFSLMMIGNILNFIVRASASAKRVLEVL 320

Query: 59  DLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSG 118
           +  P+ +     + L  + G V F N+ F Y    T P+L+ V  +++   +VA++G +G
Sbjct: 321 NEKPAIEEADNALALPNVEGSVSFENVEFRYFE-NTDPVLSGVNFSVKPGSLVAVLGETG 379

Query: 119 SGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMY 178
           SGKST +NL+ RL +P  G++ +D   +  + ++ LR  I  V QE  L    IK N+ +
Sbjct: 380 SGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKW 439

Query: 179 GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDP 236
           G   D  +++I  AAK A +H+FI+SLP GY++ V+      SGGQKQR++IARA+++ P
Sbjct: 440 GRE-DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKP 498

Query: 237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 296
            +L+LD+ TS++D  +E   K +L  L+   K   T  +I  ++ T    D+I+V+ +G+
Sbjct: 499 KVLILDDCTSSVDPITE---KRILDGLKRYTK-GCTTFIITQKIPTALLADKILVLHEGK 554

Query: 297 IIEVGNHAELLHKGRLYAKLVKRQ 320
           +   G H ELL   + Y ++ + Q
Sbjct: 555 VAGFGTHKELLEHCKPYREIYESQ 578

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390

 Score =  197 bits (502), Expect = 2e-60
 Identities = 60/251 (23%), Positives = 113/251 (45%), Gaps = 15/251 (5%)

Query: 78  GHVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 136
           G +   +++  Y        IL ++  +I   + V ++G +GSGKST ++  LRL     
Sbjct: 18  GQMTVKDLTAKY--TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE- 74

Query: 137 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKN-EDIEWAAKQ 195
           G+I IDG     + +   R+  G + Q+  +     + N+    P    + ++I   A +
Sbjct: 75  GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLD---PNAAHSDQEIWKVADE 131

Query: 196 AYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 253
             +   I   P   + ++ D   +LS G KQ + +AR++L    ILLLDE ++ LD  + 
Sbjct: 132 VGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTY 191

Query: 254 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLH-KGRL 312
             ++  L     DC    TVI+   R+  +   D+ +VI++ ++ +  +  EL H     
Sbjct: 192 QIIRRTLKQAFADC----TVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADR 247

Query: 313 YAKLVKRQTES 323
           +        + 
Sbjct: 248 FVAGFIGSPKM 258

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275

 Score =  154 bits (391), Expect = 3e-45
 Identities = 66/249 (26%), Positives = 115/249 (46%), Gaps = 29/249 (11%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           ++   ++++Y        L  + + I+  EV AI+G +G GKST       + +PS G+I
Sbjct: 8   LKVEELNYNYS--DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65

Query: 140 YIDGFPLTD--LDIRWLREKIGFVGQEP--QLLQMDIKSNIMYG-----CPKDVKNEDIE 190
             D  P+      I  LRE IG V Q+P  QL    +  ++ +G      P+D   + ++
Sbjct: 66  LFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVD 125

Query: 191 WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 250
            A K+  +                   LS GQK+R+AIA  ++ +P +L+LDE T+ LD 
Sbjct: 126 NALKRTGIEHLKDKPT---------HCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDP 176

Query: 251 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRII------EVGNH 303
                +  +L  ++ +     T+I+  H +  +    D + V+ +GR+I      EV   
Sbjct: 177 MGVSEIMKLLVEMQKELGI--TIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234

Query: 304 AELLHKGRL 312
            E++ K  L
Sbjct: 235 KEVIRKVNL 243

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score =  151 bits (384), Expect = 3e-44
 Identities = 57/250 (22%), Positives = 103/250 (41%), Gaps = 32/250 (12%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           +Q   I      +    IL  +   I   +   + GL+G+GK+T +N+L      + G +
Sbjct: 22  IQLDQIGRMKQGKT---ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTV 78

Query: 140 YIDGFPL--TDLDIRWLREKIGFVGQEPQLLQMDIKSNI------------MYGCPKDVK 185
            + G            +R+ IGFV      L    +                 G  +D+ 
Sbjct: 79  NLFGKMPGKVGYSAETVRQHIGFVSHS---LLEKFQEGERVIDVVISGAFKSIGVYQDID 135

Query: 186 NEDIEWAAKQAYVHEFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDE 243
           +E    A +       +L L  G        +  LS G+KQR+ IARA++  P +L+LDE
Sbjct: 136 DEIRNEAHQ-------LLKL-VGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDE 187

Query: 244 ATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGN 302
             + LD  +   +  +L +L +   T   +I + H +  I     +I+++ DG+ I+ G 
Sbjct: 188 PAAGLDFIARESLLSILDSLSDSYPTL-AMIYVTHFIEEITANFSKILLLKDGQSIQQGA 246

Query: 303 HAELLHKGRL 312
             ++L    +
Sbjct: 247 VEDILTSENM 256

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235

 Score =  149 bits (379), Expect = 6e-44
 Identities = 74/235 (31%), Positives = 122/235 (51%), Gaps = 26/235 (11%)

Query: 80  VQFVNISFHYPS-RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 138
           V+  N++  Y      +  L +V L I+  E V+I+G SGSGKST +N++  L +P++G+
Sbjct: 2   VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61

Query: 139 IYIDGFPLTDLD------IRWLREKIGFVGQEPQLL-QMDIKSNIM----YGCPKDVKNE 187
           +YID     DLD      IR  R+KIGFV Q+  L+  +    N+     +     +  E
Sbjct: 62  VYIDNIKTNDLDDDELTKIR--RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE 119

Query: 188 DIEWAAKQAYVHEFILSLPCGYETLVDDDL---LSGGQKQRIAIARAILRDPAILLLDEA 244
           +    A +       L +    E    +     LSGGQ+QR+AIARA+  +P I+L D+ 
Sbjct: 120 ERRKRALEC------LKM-AELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQP 172

Query: 245 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIE 299
           T ALDS++   +  +L  L    +  +TV+V+ H ++  +  +RI+ + DG +  
Sbjct: 173 TWALDSKTGEKIMQLLKKLNE--EDGKTVVVVTHDINVARFGERIIYLKDGEVER 225

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366

 Score =  152 bits (386), Expect = 1e-43
 Identities = 76/242 (31%), Positives = 122/242 (50%), Gaps = 30/242 (12%)

Query: 80  VQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 138
           ++  NI+  +     T+  LN+V L + A ++  ++G SG+GKST +  +  L  P++G 
Sbjct: 25  IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84

Query: 139 IYIDGFPLTDLD---IRWLREKIGFVGQEPQLL-QMDIKSNIMY-----GCPKDVKNEDI 189
           + +DG  LT L    +   R +IG + Q   LL    +  N+         PK       
Sbjct: 85  VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPK------- 137

Query: 190 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSA 247
                +  V E +LSL  G     D     LSGGQKQR+AIARA+  +P +LL D+ATSA
Sbjct: 138 --DEVKRRVTE-LLSL-VGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSA 193

Query: 248 LDSESEHYVKGVLHALR--NDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHA 304
           LD  +    + +L  L+  N  +   T+++I H +  +K + D + VI +G +IE    +
Sbjct: 194 LDPAT---TRSILELLKDINR-RLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVS 249

Query: 305 EL 306
           E+
Sbjct: 250 EV 251

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score =  148 bits (376), Expect = 4e-43
 Identities = 65/240 (27%), Positives = 111/240 (46%), Gaps = 28/240 (11%)

Query: 80  VQFVNISFHYPSRPT--VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 137
           ++ VN+S  +          L +V L I   E + + G +GSGKST + ++  L EP+ G
Sbjct: 3   IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62

Query: 138 QIYIDGFPLTDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYG-----CPKDVKNEDIE 190
            +  DG          +R  IG   Q P  Q     +   + +        +D     ++
Sbjct: 63  DVLYDG---ERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPV-PLVK 118

Query: 191 WAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSAL 248
            A +        + L   +++  D     LSGG+K+R+AIA  I+ +P IL+LDE    L
Sbjct: 119 KAMEF-------VGLD--FDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGL 169

Query: 249 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELL 307
           D E +  +  ++   +      +TVI+I+H + T+   VDR+VV++ G+ +  G   E L
Sbjct: 170 DREGKTDLLRIVEKWK---TLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFL 226

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237

 Score =  145 bits (369), Expect = 2e-42
 Identities = 70/259 (27%), Positives = 124/259 (47%), Gaps = 49/259 (18%)

Query: 77  MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 136
           M  +   N +F + +R   P LN +  +I    +VA+VG  G GKS+ ++ LL   +  +
Sbjct: 1   MNSITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVE 59

Query: 137 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVK----------- 185
           G + I G              + +V Q+  +    ++ NI++GC  +             
Sbjct: 60  GHVAIKG-------------SVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACAL 106

Query: 186 NEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDE 243
             D+E              LP G  T + +    LSGGQKQR+++ARA+  +  I L D+
Sbjct: 107 LPDLE-------------ILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDD 153

Query: 244 ATSALDSE-SEHYVKGVLH---ALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIE 299
             SA+D+   +H  + V+     L+N     +T I++ H +S +  VD I+V+  G+I E
Sbjct: 154 PLSAVDAHVGKHIFENVIGPKGMLKN-----KTRILVTHSMSYLPQVDVIIVMSGGKISE 208

Query: 300 VGNHAELLHKGRLYAKLVK 318
           +G++ ELL +   +A+ ++
Sbjct: 209 MGSYQELLARDGAFAEFLR 227

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229

 Score =  144 bits (367), Expect = 3e-42
 Identities = 56/257 (21%), Positives = 107/257 (41%), Gaps = 53/257 (20%)

Query: 78  GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 137
             V   N++  +      P+L  +   IE  +++A+ G +G+GK++ + +++   EPS+G
Sbjct: 5   TEVVMENVTAFW-EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 63

Query: 138 QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVK-----------N 186
           +I   G             +I F  Q   ++   IK NI++G   D              
Sbjct: 64  KIKHSG-------------RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLE 110

Query: 187 EDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEA 244
           EDI                      ++ +    LSGGQ+ RI++ARA+ +D  + LLD  
Sbjct: 111 EDIS-------------KFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSP 157

Query: 245 TSALDSES-----EHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIE 299
              LD  +     E  V  ++          +T I++  ++  +K  D+I+++ +G    
Sbjct: 158 FGYLDVLTEKEIFESCVCKLMA--------NKTRILVTSKMEHLKKADKILILHEGSSYF 209

Query: 300 VGNHAELLHKGRLYAKL 316
            G  +EL +    ++  
Sbjct: 210 YGTFSELQNLQPDFSSK 226

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224

 Score =  144 bits (366), Expect = 4e-42
 Identities = 59/232 (25%), Positives = 111/232 (47%), Gaps = 29/232 (12%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           ++  NI           IL  + L+++  E V+I+G SGSGKST + +L  L  P++G++
Sbjct: 5   LRAENIKKVIR---GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKV 61

Query: 140 YIDGFPLTDLD------IRWLREKIGFVGQEPQLL-QMDIKSNIM----Y-GCPKDVKNE 187
           +++G  +   +      +R    K+GFV Q   L+ ++    N++      G PK    E
Sbjct: 62  FLEGKEVDYTNEKELSLLR--NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKE 119

Query: 188 DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSA 247
             E+   +  + + +   P           LSGG++QR+AIARA+  +P +L  DE T  
Sbjct: 120 RGEYLLSELGLGDKLSRKP---------YELSGGEQQRVAIARALANEPILLFADEPTGN 170

Query: 248 LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIE 299
           LDS +   V  +   +    +   +++++ H     +   R + + DG+++ 
Sbjct: 171 LDSANTKRVMDIFLKIN---EGGTSIVMVTHERELAELTHRTLEMKDGKVVG 219

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263

 Score =  145 bits (367), Expect = 8e-42
 Identities = 77/222 (34%), Positives = 113/222 (50%), Gaps = 24/222 (10%)

Query: 97  ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD--LDIRWL 154
           +L  + + I   EVV ++G SGSGKSTF+  L  L +  +G+I IDG  L     ++  +
Sbjct: 39  VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98

Query: 155 REKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAY-------VHEFILSLP 206
           RE++G V Q   L   M + +NI    P  V+    E A  +A        + +   + P
Sbjct: 99  REEVGMVFQRFNLFPHMTVLNNITLA-PMKVRKWPREKAEAKAMELLDKVGLKDKAHAYP 157

Query: 207 CGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 266
                    D LSGGQ QR+AIARA+  +P I+L DE TSALD E    V  VL  ++  
Sbjct: 158 ---------DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPE---MVGEVLSVMKQL 205

Query: 267 CKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 307
                T++V+ H +   + V DR++ +D G IIE G   +L 
Sbjct: 206 ANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLF 247

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score =  144 bits (366), Expect = 1e-41
 Identities = 46/236 (19%), Positives = 87/236 (36%), Gaps = 27/236 (11%)

Query: 80  VQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 138
           +Q  N+      +      L ++ L +   E V I+G +GSGK+T +  +  L  P  G 
Sbjct: 2   IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGL-LPYSGN 59

Query: 139 IYIDGFPLTDLDIRWLREKIGFVGQEPQL--LQMDIKSNIMYGC-PKDVKNEDIEWAAKQ 195
           I+I+G     +++R +R  I +    P+   + + +   +      K +  +      K 
Sbjct: 60  IFING-----MEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLK- 113

Query: 196 AYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHY 255
                  L L           L S GQ   +  + A+   P I+ LDE    +D+   H 
Sbjct: 114 ------ALKLGEEILRRKLYKL-SAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHV 166

Query: 256 VKGVLHALRNDCKTKRTVIVIAHRLST-IKAVDRIVVIDDGRIIE-VGNHAELLHK 309
           +   +          +  I++ H L       +       G  ++   + +ELL  
Sbjct: 167 ISRYIKEY------GKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290

 Score =  141 bits (357), Expect = 4e-40
 Identities = 57/258 (22%), Positives = 107/258 (41%), Gaps = 53/258 (20%)

Query: 84  NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 143
           ++SF   S    P+L  +   IE  +++A+ G +G+GK++ + +++   EPS+G+I   G
Sbjct: 40  SLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 99

Query: 144 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVK-----------NEDIEWA 192
                        +I F  Q   ++   IK NI+ G   D              EDI   
Sbjct: 100 -------------RISFCSQNSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDIS-- 143

Query: 193 AKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDS 250
                              ++ +    LSGGQ+ RI++ARA+ +D  + LLD     LD 
Sbjct: 144 -----------KFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 192

Query: 251 ES-----EHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAE 305
            +     E  V  ++          +T I++  ++  +K  D+I+++ +G     G  +E
Sbjct: 193 LTEKEIFESCVCKLMA--------NKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSE 244

Query: 306 LLHKGRLYAKLVKRQTES 323
           L +    ++  +      
Sbjct: 245 LQNLRPDFSSKLMGCDSF 262

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262

 Score =  138 bits (349), Expect = 4e-39
 Identities = 69/229 (30%), Positives = 112/229 (48%), Gaps = 26/229 (11%)

Query: 97  ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT--------- 147
           +L  V L   A +V++I+G SGSGKSTF+  +  L +PS+G I ++G  +          
Sbjct: 21  VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80

Query: 148 ----DLDIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFI 202
                  +R LR ++  V Q   L   M +  N+M   P  V       A ++A      
Sbjct: 81  KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA-PIQVLGLSKHDARERA---LKY 136

Query: 203 LSLPCGYETLVDDDL---LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV 259
           L+   G +          LSGGQ+QR++IARA+  +P +LL DE TSALD E    V  V
Sbjct: 137 LAK-VGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPE---LVGEV 192

Query: 260 LHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 307
           L  ++   +  +T++V+ H +   + V   ++ +  G+I E G+  ++ 
Sbjct: 193 LRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVF 241

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score =  140 bits (355), Expect = 1e-37
 Identities = 47/232 (20%), Positives = 86/232 (37%), Gaps = 38/232 (16%)

Query: 79  HVQFVNISFHYPS---RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 135
                + +F YPS        +LN        +E++ ++G +G+GK+T + LL    +P 
Sbjct: 346 QNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD 405

Query: 136 DGQIYIDGFPLTDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCPKDVKNEDIE--- 190
           +GQ       +  L++    +KI         QL    I+   +       + + ++   
Sbjct: 406 EGQD------IPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFL---NPQFQTDVVKPLR 456

Query: 191 -WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 249
                   V                   LSGG+ QR+AI  A+     I L+DE ++ LD
Sbjct: 457 IDDIIDQEVQH-----------------LSGGELQRVAIVLALGIPADIYLIDEPSAYLD 499

Query: 250 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEV 300
           SE       V+         K+T  ++ H       + D+++V +       
Sbjct: 500 SEQRIICSKVIRRFIL--HNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNA 549

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score =  131 bits (331), Expect = 2e-34
 Identities = 45/243 (18%), Positives = 88/243 (36%), Gaps = 50/243 (20%)

Query: 84  NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI---- 139
           +++  Y +        H   T    +V+ +VG +G GKST + +L    +P+ G+     
Sbjct: 82  HVTHRYSA---NSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPP 138

Query: 140 -------YIDGFPLTDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGC-----PKDVK 185
                  Y  G  L +   + L + I  + +      +   IK  +           +  
Sbjct: 139 EWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKS 198

Query: 186 NEDIEWAAKQ--------AYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 237
            ED++   K           + +                 LSGG+ QR AI  + +++  
Sbjct: 199 PEDVKRYIKILQLENVLKRDIEK-----------------LSGGELQRFAIGMSCVQEAD 241

Query: 238 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGR 296
           + + DE +S LD +           +R+     + VI + H LS +  + D + +I    
Sbjct: 242 VYMFDEPSSYLDVKQ---RLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP 298

Query: 297 IIE 299
            + 
Sbjct: 299 SVY 301

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score =  131 bits (332), Expect = 1e-36
 Identities = 55/216 (25%), Positives = 102/216 (47%), Gaps = 20/216 (9%)

Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 157
           L  +   IE  E+  ++G +G+GK+T + ++  L +PS G + + G  + + +   +R+ 
Sbjct: 31  LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 89

Query: 158 IGFVGQEPQL-LQMDIKSNI-----MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET 211
           I ++ +E      M     +      Y        E +E A + A + E I      Y  
Sbjct: 90  ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTY-- 147

Query: 212 LVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 271
                  S G  +++ IARA++ +P + +LDE TS LD  +   V+ +L     +     
Sbjct: 148 -------SKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE---GL 197

Query: 272 TVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAEL 306
           T++V +H +  ++ + DRI +I +G I+E G   EL
Sbjct: 198 TILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEEL 233

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score =  133 bits (338), Expect = 2e-35
 Identities = 63/234 (26%), Positives = 97/234 (41%), Gaps = 48/234 (20%)

Query: 79  HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 138
            V +  +   Y S      L      I+  EV+ IVG +G GK+TFV +L  + EP++G+
Sbjct: 287 LVTYPRLVKDYGSF----RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK 342

Query: 139 IYIDG-----FPLTDLDIR-----WLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 188
           I  D            D        L +         +L     K+ ++    K +   D
Sbjct: 343 IEWDLTVAYKPQYIKADYEGTVYELLSKID-----ASKLNSNFYKTELL----KPLGIID 393

Query: 189 IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSAL 248
           +        V+E                 LSGG+ QR+AIA  +LRD  I LLDE ++ L
Sbjct: 394 L----YDREVNE-----------------LSGGELQRVAIAATLLRDADIYLLDEPSAYL 432

Query: 249 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 301
           D E    V   +  L    K ++T +V+ H +  I  V DR++V  +G   + G
Sbjct: 433 DVEQRLAVSRAIRHLME--KNEKTALVVEHDVLMIDYVSDRLMVF-EGEPGKYG 483

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score =  126 bits (319), Expect = 6e-33
 Identities = 51/227 (22%), Positives = 92/227 (40%), Gaps = 23/227 (10%)

Query: 83  VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS------D 136
            +    Y        + +    ++   VV IVG +G+GKST V +L     P+       
Sbjct: 25  EDCVHRYGVNA---FVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDS 81

Query: 137 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQM-DIKSNIMYGCPKDVKNEDIEWAAKQ 195
               I  F   +L   + + K G +    +  Q  D+    + G   ++  +  E    +
Sbjct: 82  WDGVIRAFRGNELQNYFEKLKNGEIRPVVKP-QYVDLIPKAVKGKVIELLKKADETGKLE 140

Query: 196 AYVHEFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 253
             V    L      E +++ ++  LSGG+ QR+AIA A+LR+      DE +S LD    
Sbjct: 141 EVVKALEL------ENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQR 194

Query: 254 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIE 299
                 +  L    +  ++V+V+ H L+ +  + D I V+     + 
Sbjct: 195 LNAARAIRRLS---EEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVY 238

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score =  134 bits (339), Expect = 2e-35
 Identities = 56/234 (23%), Positives = 95/234 (40%), Gaps = 23/234 (9%)

Query: 80  VQFVNISFHYPSRPT-----VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP 134
           +  VN+                 + +    ++   VV IVG +G+GK+T V +L     P
Sbjct: 84  ISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIP 143

Query: 135 S------DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 188
           +           I  F   +L   + R K G +    +   +D+    + G  +++  + 
Sbjct: 144 NLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV 203

Query: 189 IEWAAKQAYVHEFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATS 246
            E    +  V E  L      E ++D +L  LSGG+ QR+AIA A+LR       DE +S
Sbjct: 204 DEVGKFEEVVKELEL------ENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSS 257

Query: 247 ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIE 299
            LD      V  V+  L       + V+V+ H L+ +  + D I V+     + 
Sbjct: 258 YLDIRQRLKVARVIRRLA---NEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVY 308

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score =  129 bits (326), Expect = 1e-33
 Identities = 60/234 (25%), Positives = 96/234 (41%), Gaps = 48/234 (20%)

Query: 79  HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 138
            V++  +   Y S      L      I   EV+ IVG +G GK+TFV +L  + EP++G+
Sbjct: 357 LVEYPRLVKDYGSF----KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK 412

Query: 139 IYIDG---F--PLTDLDIR-----WLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 188
           +  D    +       +        L +         +L     K+ ++    K +   D
Sbjct: 413 VEWDLTVAYKPQYIKAEYEGTVYELLSKID-----SSKLNSNFYKTELL----KPLGIID 463

Query: 189 IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSAL 248
           +        V +                 LSGG+ QR+AIA  +LRD  I LLDE ++ L
Sbjct: 464 L----YDRNVED-----------------LSGGELQRVAIAATLLRDADIYLLDEPSAYL 502

Query: 249 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 301
           D E    V   +  L    K ++T +V+ H +  I  V DR++V  +G     G
Sbjct: 503 DVEQRLAVSRAIRHLME--KNEKTALVVEHDVLMIDYVSDRLIVF-EGEPGRHG 553

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score =  132 bits (333), Expect = 7e-35
 Identities = 40/214 (18%), Positives = 84/214 (39%), Gaps = 38/214 (17%)

Query: 97  ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT--------D 148
            L       +  E++ I+G +G GK+TF  +L+      +G +  +   L+        +
Sbjct: 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPN 342

Query: 149 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCG 208
            D   +++ +    ++           +     K +    +     ++ V++        
Sbjct: 343 YDGT-VQQYLENASKDALSTSSWFFEEVT----KRLNLHRL----LESNVND-------- 385

Query: 209 YETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCK 268
                    LSGG+ Q++ IA  + ++  + +LD+ +S LD E  + V   +  +    +
Sbjct: 386 ---------LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTR--E 434

Query: 269 TKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 301
            K    +I H LS    + DRI+V   G   + G
Sbjct: 435 RKAVTFIIDHDLSIHDYIADRIIVF-KGEPEKAG 467

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score =  125 bits (317), Expect = 1e-32
 Identities = 42/209 (20%), Positives = 85/209 (40%), Gaps = 25/209 (11%)

Query: 104 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR-EKIGFVG 162
           T + N ++ ++G +G GK+T + +L     P+ G    +     D  ++  R ++I    
Sbjct: 21  TPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP--NSKVGKDEVLKRFRGKEIYNYF 78

Query: 163 QEP---------QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLV 213
           +E          ++  ++  S  + G   ++  +  E   K        +        L 
Sbjct: 79  KELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNM------TNLW 132

Query: 214 DDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 271
           + D   LSGG  QR+ +A ++LR+  + + D+ +S LD      +   +  L       +
Sbjct: 133 NKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIREL----LKNK 188

Query: 272 TVIVIAHRLSTIKAV-DRIVVIDDGRIIE 299
            VIV+ H L  +  + D I +I     + 
Sbjct: 189 YVIVVDHDLIVLDYLTDLIHIIYGESSVY 217

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score =  123 bits (311), Expect = 4e-34
 Identities = 44/209 (21%), Positives = 84/209 (40%), Gaps = 32/209 (15%)

Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 157
           L  + +TIE   VV   G +G GK+T +  +    +P  G+I  +G       I  ++ K
Sbjct: 25  LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGV-----PITKVKGK 79

Query: 158 IGFVGQEPQL-LQMDIKSNI-----MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET 211
           I F+ +E  +  ++ ++  +     +YG   +    +I  A +   V +           
Sbjct: 80  IFFLPEEIIVPRKISVEDYLKAVASLYGVKVN--KNEIMDALESVEVLD----------- 126

Query: 212 LVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKT 269
            +   L  LS G  +R+ +A  +L +  I +LD+   A+D +S+H V   +  +  +   
Sbjct: 127 -LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGI 185

Query: 270 KRTVIVIAHRLSTIKAVDRIVVIDDGRII 298
              +I     LS     D    +      
Sbjct: 186 --VIISSREELSY---CDVNENLHKYSTK 209

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353

 Score =  121 bits (305), Expect = 6e-32
 Identities = 66/250 (26%), Positives = 118/250 (47%), Gaps = 36/250 (14%)

Query: 77  MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 136
           M  +   N+S  +     V  L++V + IE  E   I+G SG+GK+TF+ ++  L  PS 
Sbjct: 1   MVRIIVKNVSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPST 59

Query: 137 GQIYIDGFPLTDLDIRWLREK---IGFVGQE----PQLLQMDIKSNIMYG-----CPKDV 184
           G++Y D   +       +  +   IG V Q     P    +    NI +        K+ 
Sbjct: 60  GELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPN---LTAFENIAFPLTNMKMSKEE 116

Query: 185 KNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLD 242
             + +E  AK       IL +      +++     LSG Q+QR+A+ARA+++DP++LLLD
Sbjct: 117 IRKRVEEVAK-------ILDI----HHVLNHFPRELSGAQQQRVALARALVKDPSLLLLD 165

Query: 243 EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV---DRIVVIDDGRIIE 299
           E  S LD+      + ++  +++      T++V++H           DR+ V+  G++++
Sbjct: 166 EPFSNLDARMRDSARALVKEVQSRLGV--TLLVVSH--DPADIFAIADRVGVLVKGKLVQ 221

Query: 300 VGNHAELLHK 309
           VG   +L   
Sbjct: 222 VGKPEDLYDN 231

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score =  115 bits (290), Expect = 1e-30
 Identities = 43/221 (19%), Positives = 87/221 (39%), Gaps = 22/221 (9%)

Query: 96  PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 155
             L  +   + A E++ +VG +G+GKST +  +  +     G I   G PL       L 
Sbjct: 14  TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQFAGQPLEAWSATKLA 72

Query: 156 EKIGFVGQEPQL-LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 214
               ++ Q+        +   +        + E +   A    + + +           +
Sbjct: 73  LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKL-------GRSTN 125

Query: 215 DDLLSGGQKQRIAIARAIL-------RDPAILLLDEATSALDSESEHYVKGVLHALRNDC 267
              LSGG+ QR+ +A  +L           +LLLDE  ++LD   +     +   L    
Sbjct: 126 Q--LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQS---ALDKILSALS 180

Query: 268 KTKRTVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGNHAELL 307
           +    +++ +H L+ T++   R  ++  G+++  G   E+L
Sbjct: 181 QQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362

 Score =  111 bits (281), Expect = 2e-28
 Identities = 78/251 (31%), Positives = 128/251 (50%), Gaps = 45/251 (17%)

Query: 77  MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR----LY 132
           M  ++  NI   + +      LN++ L I+  E +A++G SGSGKST    LL     +Y
Sbjct: 1   MVEIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKST----LLYTIAGIY 53

Query: 133 EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE----PQLLQMDIKSNIMYG-----CPKD 183
           +P+ G+IY D   +T+L  +  R  +G V Q     P    M +  NI +       P++
Sbjct: 54  KPTSGKIYFDEKDVTELPPK-DRN-VGLVFQNWALYPH---MTVYKNIAFPLELRKAPRE 108

Query: 184 VKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLL 241
             ++ +   AK       +L +    + L++     LSGGQ+QR+AIARA++++P +LLL
Sbjct: 109 EIDKKVREVAK-------MLHI----DKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLL 157

Query: 242 DEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV---DRIVVIDDGRII 298
           DE  S LD+     V+  L  L+ +     T + + H     +A+   DRI VI +G I+
Sbjct: 158 DEPLSNLDALLRLEVRAELKRLQKELGI--TTVYVTH--DQAEALAMADRIAVIREGEIL 213

Query: 299 EVGNHAELLHK 309
           +VG   E+ +K
Sbjct: 214 QVGTPDEVYYK 224

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355

 Score =  110 bits (277), Expect = 5e-28
 Identities = 64/243 (26%), Positives = 107/243 (44%), Gaps = 50/243 (20%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR----LYEPS 135
           ++FV +   YP       +  V   I   E+V ++G SGSGK+T    +LR    L  P+
Sbjct: 15  IEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTT----ILRLIAGLERPT 68

Query: 136 DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNIMYG-----CPKDVKNEDI 189
            G ++I G  +TDL  +  +  +G V Q   L Q M +  N+ +G      PKD  +  +
Sbjct: 69  KGDVWIGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARV 126

Query: 190 EWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 249
               +   +  +    P           LSGGQ+QR+A+ARA+   P +LL DE  +A+D
Sbjct: 127 RELLRFMRLESYANRFP---------HELSGGQQQRVALARALAPRPQVLLFDEPFAAID 177

Query: 250 SESEHYVKGVLHALRNDCK-----TKRTVIVIAH------RLSTIKAVDRIVVIDDGRII 298
                    +   LR   +        T + + H       ++     DR++V+ +G + 
Sbjct: 178 -------TQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVA-----DRVLVLHEGNVE 225

Query: 299 EVG 301
           + G
Sbjct: 226 QFG 228

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score =  107 bits (270), Expect = 1e-27
 Identities = 55/228 (24%), Positives = 97/228 (42%), Gaps = 43/228 (18%)

Query: 84  NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 143
           N+ F+Y +     +   +   +   +++A++G +G GKST ++LLL ++ P  G+I +  
Sbjct: 9   NLGFYYQAEN--FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQ 66

Query: 144 FPLTDLDIRWLREKIGFVGQEPQ----LLQMDIKSNIMYGC---------PKDVKNEDIE 190
                         IGFV Q          +DI   ++ G          PK    +   
Sbjct: 67  -------------SIGFVPQFFSSPFAYSVLDI---VLMGRSTHINTFAKPKSHDYQVAM 110

Query: 191 WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 250
            A     +           +       LSGGQ+Q I IARAI  +  ++LLDE TSALD 
Sbjct: 111 QALDYLNLTHLA-------KREFTS--LSGGQRQLILIARAIASECKLILLDEPTSALDL 161

Query: 251 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRI 297
            ++  V  +L  L        TV+   H+ + + A+ ++ ++++    
Sbjct: 162 ANQDIVLSLLIDLAQS--QNMTVVFTTHQPNQVVAIANKTLLLNKQNF 207

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359

 Score =  106 bits (268), Expect = 1e-26
 Identities = 66/257 (25%), Positives = 116/257 (45%), Gaps = 63/257 (24%)

Query: 79  HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR----LYEP 134
            +   ++S  + +    P+LN + L+++  E++ I+G SG GK+T    LLR      +P
Sbjct: 4   ALHIGHLSKSFQN---TPVLNDISLSLDPGEILFIIGASGCGKTT----LLRCLAGFEQP 56

Query: 135 SDGQIYIDGFPLTDLDIRWLREK--IGFVGQE----PQLLQMDIKSNIMYGCPKDVKNED 188
             G+I + G  +   +      +  +G++ QE    P    + +  NI YG    + N  
Sbjct: 57  DSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFP---HLTVYRNIAYG----LGNGK 109

Query: 189 IEWAAKQAYVHEFILSLPCGYETLVD-DDL-------LSGGQKQRIAIARAILRDPAILL 240
              A ++  +   +L        L    +L       LSGGQ+QR A+ARA+  DP ++L
Sbjct: 110 GRTAQERQRIEA-MLE-------LTGISELAGRYPHELSGGQQQRAALARALAPDPELIL 161

Query: 241 LDEATSALDSESEHYVKGVLHALRNDCKT--KR---TVIVIAH------RLSTIKAVDRI 289
           LDE  SALD       + +   +R D     +    + + ++H      + +     DRI
Sbjct: 162 LDEPFSALD-------EQLRRQIREDMIAALRANGKSAVFVSHDREEALQYA-----DRI 209

Query: 290 VVIDDGRIIEVGNHAEL 306
            V+  GRI++  +  EL
Sbjct: 210 AVMKQGRILQTASPHEL 226

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359

 Score =  106 bits (266), Expect = 2e-26
 Identities = 68/261 (26%), Positives = 112/261 (42%), Gaps = 65/261 (24%)

Query: 77  MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR----LY 132
           M  ++ VN+  ++     V  ++ V   ++  E VA++G SG GK+T     L     +Y
Sbjct: 1   MPSIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTT----TLLMLAGIY 53

Query: 133 EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE----PQLLQMDIKSNIMYG-----CPKD 183
           +P+ G+IY D   + D+  +  RE +G V Q     P    M +  NI +        KD
Sbjct: 54  KPTSGEIYFDDVLVNDIPPK-YRE-VGMVFQNYALYPH---MTVFENIAFPLRARRISKD 108

Query: 184 VKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLL 241
              + +   A+        L +    + L+D     LSGGQ+QR+A+ARA+++ P +LL 
Sbjct: 109 EVEKRVVEIAR-------KLLI----DNLLDRKPTQLSGGQQQRVALARALVKQPKVLLF 157

Query: 242 DEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH-RLST---------IKAV---DR 288
           DE  S LD+            LR      R  I      L            +A+    R
Sbjct: 158 DEPLSNLDA-----------NLRM---IMRAEIKHLQQELGITSVYVTHDQAEAMTMASR 203

Query: 289 IVVIDDGRIIEVGNHAELLHK 309
           I V + G++++ G   E+   
Sbjct: 204 IAVFNQGKLVQYGTPDEVYDS 224

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240

 Score =  103 bits (259), Expect = 2e-26
 Identities = 57/219 (26%), Positives = 107/219 (48%), Gaps = 29/219 (13%)

Query: 99  NHVCLTIE-ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 157
             + +  E   +   ++G +G+GKS F+ L+  + +P  G++ ++G  +T L     R  
Sbjct: 14  FRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRG 71

Query: 158 IGFVGQEPQLL-QMDIKSNIMYG---CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLV 213
           IGFV Q+  L   + +  NI YG     +  ++  +   A++  +   +   P       
Sbjct: 72  IGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP------- 124

Query: 214 DDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTV 273
               LSGG++QR+A+ARA++  P +LLLDE  SA+D +++  +   L  ++   +    +
Sbjct: 125 --ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQR--EFDVPI 180

Query: 274 IVIAH------RLSTIKAVDRIVVIDDGRIIEVGNHAEL 306
           + + H       L+     D + V+ +GRI+E G   EL
Sbjct: 181 LHVTHDLIEAAMLA-----DEVAVMLNGRIVEKGKLKEL 214

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372

 Score =  104 bits (262), Expect = 9e-26
 Identities = 69/265 (26%), Positives = 112/265 (42%), Gaps = 67/265 (25%)

Query: 77  MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR----LY 132
           M  V+ V++   +     V  ++   L ++  E + ++G SG GK+T     LR    L 
Sbjct: 1   MAGVRLVDVWKVFGEVTAVREMS---LEVKDGEFMILLGPSGCGKTT----TLRMIAGLE 53

Query: 133 EPSDGQIYIDGFPLTDLDIRWLRE----KIGFVGQE----PQLLQMDIKSNIMYG----- 179
           EPS GQIYI    + D +           I  V Q     P    M +  NI +      
Sbjct: 54  EPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPH---MTVYDNIAFPLKLRK 110

Query: 180 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPA 237
            P+   ++ +   A+       +L L      L++     LSGGQ+QR+A+ RAI+R P 
Sbjct: 111 VPRQEIDQRVREVAE-------LLGL----TELLNRKPRELSGGQRQRVALGRAIVRKPQ 159

Query: 238 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH-RLST---------IKAV- 286
           + L+DE  S LD++           LR      R  +     +L           ++A+ 
Sbjct: 160 VFLMDEPLSNLDAK-----------LRVR---MRAELKKLQRQLGVTTIYVTHDQVEAMT 205

Query: 287 --DRIVVIDDGRIIEVGNHAELLHK 309
             DRI V++ G + +VG+  E+  K
Sbjct: 206 MGDRIAVMNRGVLQQVGSPDEVYDK 230

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372

 Score =  103 bits (260), Expect = 2e-25
 Identities = 74/261 (28%), Positives = 124/261 (47%), Gaps = 65/261 (24%)

Query: 77  MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR----LY 132
           M  V+  N++  + +      +N + LTI+  E + ++G SG GK+T     LR    L 
Sbjct: 9   MVEVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTT----TLRMIAGLE 61

Query: 133 EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE----PQLLQMDIKSNIMYG-----CPKD 183
           EP++G+IY     +T L  +  R  I  V Q     P    M +  NI +       PKD
Sbjct: 62  EPTEGRIYFGDRDVTYLPPK-DRN-ISMVFQSYAVWPH---MTVYENIAFPLKIKKFPKD 116

Query: 184 VKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLL 241
             ++ + WAA+       +L +    E L++     LSGGQ+QR+A+ARAI+ +P +LL+
Sbjct: 117 EIDKRVRWAAE-------LLQI----EELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLM 165

Query: 242 DEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH-RLST---------IKAV---DR 288
           DE  S LD++           LR      R  I     +L           ++A+   DR
Sbjct: 166 DEPLSNLDAK-----------LRVA---MRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDR 211

Query: 289 IVVIDDGRIIEVGNHAELLHK 309
           I V++ G+++++G+  E+  +
Sbjct: 212 IAVMNRGQLLQIGSPTEVYLR 232

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348

 Score =  102 bits (256), Expect = 5e-25
 Identities = 68/248 (27%), Positives = 112/248 (45%), Gaps = 55/248 (22%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR----LYEPS 135
           ++  ++S  + +      L+++ L +E+ E   I+G +G+GK+      L      + P 
Sbjct: 2   IEIESLSRKWKNF----SLDNLSLKVESGEYFVILGPTGAGKTL----FLELIAGFHVPD 53

Query: 136 DGQIYIDGFPLTDLDIRWLREKIGFVGQE----PQLLQMDIKSNIMYG--CPKDVKNEDI 189
            G+I +DG  +TDL     +  I FV Q     P    M++K N+ +G    K    + +
Sbjct: 54  SGRILLDGKDVTDLSPE--KHDIAFVYQNYSLFPH---MNVKKNLEFGMRMKKIKDPKRV 108

Query: 190 EWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 249
              A+   +   +   P           LSGG++QR+A+ARA++ +P ILLLDE  SALD
Sbjct: 109 LDTARDLKIEHLLDRNP---------LTLSGGEQQRVALARALVTNPKILLLDEPLSALD 159

Query: 250 SESEHYVKGVLHALRNDCK-----TKRTVIVIAH------RLSTIKAVDRIVVIDDGRII 298
                         R          K TV+ I H       ++     DRI V+ DG++I
Sbjct: 160 -------PRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMA-----DRIAVVMDGKLI 207

Query: 299 EVGNHAEL 306
           +VG   E+
Sbjct: 208 QVGKPEEI 215

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381

 Score = 98.8 bits (247), Expect = 1e-23
 Identities = 76/266 (28%), Positives = 110/266 (41%), Gaps = 75/266 (28%)

Query: 77  MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR----LY 132
           M  VQ  N++  +     V +   + L I   E V  VG SG GKST    LLR    L 
Sbjct: 1   MASVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKST----LLRMIAGLE 53

Query: 133 EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE----PQLLQMDIKSNIMYG-----CPKD 183
             + G ++I    + D         +G V Q     P    + +  N+ +G       K+
Sbjct: 54  TITSGDLFIGEKRMNDTPPA--ERGVGMVFQSYALYPH---LSVAENMSFGLKLAGAKKE 108

Query: 184 VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL-------LSGGQKQRIAIARAILRDP 236
           V N+ +   A+       +L L           L       LSGGQ+QR+AI R ++ +P
Sbjct: 109 VINQRVNQVAE-------VLQL---------AHLLDRKPKALSGGQRQRVAIGRTLVAEP 152

Query: 237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH-RLST---------IKAV 286
           ++ LLDE  S LD+           ALR      R  I   H RL           ++A+
Sbjct: 153 SVFLLDEPLSNLDA-----------ALRVQ---MRIEISRLHKRLGRTMIYVTHDQVEAM 198

Query: 287 ---DRIVVIDDGRIIEVGNHAELLHK 309
              D+IVV+D GR+ +VG   EL H 
Sbjct: 199 TLADKIVVLDAGRVAQVGKPLELYHY 224

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257

 Score = 87.2 bits (217), Expect = 3e-20
 Identities = 56/231 (24%), Positives = 107/231 (46%), Gaps = 37/231 (16%)

Query: 98  LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 157
           L+ V +++   +V  I+G +GSGKST +N++    +  +G++Y +   +T+ +      +
Sbjct: 23  LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKE----PAE 78

Query: 158 IGFVG-----QEPQLL-QMDIKSNIMYGC-------------PKDVKNEDIEWAAKQAY- 197
           +   G     Q PQ L +M +  N++ G               K +  E  E   ++A+ 
Sbjct: 79  LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKE--EEMVEKAFK 136

Query: 198 VHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHY 255
           + EF+         L D     LSGGQ + + I RA++ +P ++++DE  + +     H 
Sbjct: 137 ILEFL-----KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHD 191

Query: 256 VKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAE 305
           +   +  L+       T ++I HRL  +    D + V+ +G+II  G   E
Sbjct: 192 IFNHVLELKAK---GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 84.3 bits (208), Expect = 4e-18
 Identities = 55/312 (17%), Positives = 102/312 (32%), Gaps = 73/312 (23%)

Query: 9   SIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS 68
            I++  ++                    +   ++  L    A + + +       N  + 
Sbjct: 364 KIVVEYIAAIGADLIDERIIDQQAWFTHITPYMTIFLHEKKAKDILDEFRKRAVDNIPVG 423

Query: 69  EGVKLQRLMG-HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNL 127
                +   G  +     S  Y ++    +LN   L ++      I G +G GKST +  
Sbjct: 424 PNFDDEEDEGEDLCNCEFSLAYGAKI---LLNKTQLRLKRARRYGICGPNGCGKSTLMRA 480

Query: 128 LLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNE 187
           +            +DGFP  +        +  +V  +      D                
Sbjct: 481 IAN--------GQVDGFPTQE------ECRTVYVEHDIDGTHSDTS-------------- 512

Query: 188 DIEWAAKQAYVHEFILSLPCGYETLVDDDL----------------LSGGQKQRIAIARA 231
                     V +F+     G +  + D L                LSGG K ++A+ARA
Sbjct: 513 ----------VLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARA 562

Query: 232 ILRDPAILLLDEATSALDSES----EHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV- 286
           +LR+  ILLLDE T+ LD+ +     +Y+               T I I+H    +  V 
Sbjct: 563 VLRNADILLLDEPTNHLDTVNVAWLVNYLN----------TCGITSITISHDSVFLDNVC 612

Query: 287 DRIVVIDDGRII 298
           + I+  +  ++ 
Sbjct: 613 EYIINYEGLKLR 624

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 72.0 bits (176), Expect = 5e-14
 Identities = 34/155 (21%), Positives = 68/155 (43%), Gaps = 14/155 (9%)

Query: 145 PLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILS 204
           P+  +D  W+            + ++D+K  +  G  + +  ++IE      +     L 
Sbjct: 836 PMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIE-----EHCSMLGLD 890

Query: 205 LPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALR 264
                 + +    LSGGQK ++ +A    + P +++LDE T+ LD +S   +  +  AL+
Sbjct: 891 PEIVSHSRIRG--LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS---LGALSKALK 945

Query: 265 NDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRII 298
                +  VI+I H     K + + +  + DGR+ 
Sbjct: 946 E---FEGGVIIITHSAEFTKNLTEEVWAVKDGRMT 977

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 50.0 bits (119), Expect = 7e-07
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 84  NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 141
           N+ F YP     P +  +      +  +A++G +G+GKST +N+L     P+ G++Y 
Sbjct: 676 NMEFQYPGTSK-PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYT 732

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240

 Score = 71.7 bits (177), Expect = 7e-15
 Identities = 51/240 (21%), Positives = 107/240 (44%), Gaps = 37/240 (15%)

Query: 84  NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 143
           ++  +Y +   +  +  + L +   ++V ++G +G+GK+T ++ +  L     G+I  +G
Sbjct: 11  SLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNG 67

Query: 144 FPLTDLDIRWL-REKIGFVGQEPQLL-QMDIKSNIMYGC----PKDVKNEDIEWAAKQAY 197
             +T+     + R  I  V +  ++  ++ +  N+M G      K+    D+EW      
Sbjct: 68  QDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEW------ 121

Query: 198 VHEF--IL----SLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 251
           +      L        G         LSGG++Q +AI RA++  P +L++DE +  L   
Sbjct: 122 IFSLFPRLKERLKQLGGT--------LSGGEQQMLAIGRALMSRPKLLMMDEPSLGL--- 170

Query: 252 SEHYVKGVLHALRNDCKTKRTVIVI---AHRLSTIKAVDRIVVIDDGRIIEVGNHAELLH 308
           +   V  V   ++   +   T++++   A     +K      V++ G+I+  G  +ELL 
Sbjct: 171 APILVSEVFEVIQKINQEGTTILLVEQNALG--ALKVAHYGYVLETGQIVLEGKASELLD 228

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250

 Score = 68.3 bits (168), Expect = 2e-13
 Identities = 69/237 (29%), Positives = 106/237 (44%), Gaps = 43/237 (18%)

Query: 96  PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL--RLYEPSDGQIYIDGFPLTDLDIRW 153
            IL  V L +   EV A++G +G+GKST   +L     Y    G+I +DG  + +L    
Sbjct: 17  TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSP-D 75

Query: 154 LREKIG-FVG-QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAY------VHEFILSL 205
            R + G F+  Q P  +          G    V   +    A QA       V EF   +
Sbjct: 76  ERARKGLFLAFQYPVEVP---------G----VTIANFLRLALQAKLGREVGVAEFWTKV 122

Query: 206 PCGYETL-VDDDLL--------SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 256
               E L  D+  L        SGG+K+R  I + ++ +P   +LDE  S LD ++   V
Sbjct: 123 KKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVV 182

Query: 257 -KGVLHALRNDCKTKRTVIVIAH--R-LSTIKAVDRIVVIDDGRIIEVGNHAELLHK 309
            +GV +A+R         +VI H  R L+ I+  D++ V+ DGR++  G   EL  +
Sbjct: 183 ARGV-NAMRGP---NFGALVITHYQRILNYIQ-PDKVHVMMDGRVVATGG-PELALE 233

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267

 Score = 66.4 bits (163), Expect = 8e-13
 Identities = 69/253 (27%), Positives = 110/253 (43%), Gaps = 47/253 (18%)

Query: 96  PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL--RLYEPSDGQIYIDGFPLTDLDIRW 153
            IL  + L +   EV AI+G +GSGKST    L     YE + G +   G  L  L    
Sbjct: 34  AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSP-E 92

Query: 154 LREKIG-FVG-QEP---------QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFI 202
            R   G F+  Q P           LQ  + +   Y   + +               +F 
Sbjct: 93  DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLD------------RFDFQ 140

Query: 203 LSLPCGYETL-VDDDLL--------SGGQKQRIAIARAILRDPAILLLDEATSALDSESE 253
             +      L + +DLL        SGG+K+R  I +  + +P + +LDE+ S LD ++ 
Sbjct: 141 DLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDAL 200

Query: 254 HYVKGVLHALRNDCKTKRTVIVIAH--R-LSTIKAVDRIVVIDDGRIIEVGNH---AELL 307
             V   +++LR+    KR+ I++ H  R L  IK  D + V+  GRI++ G+     +L 
Sbjct: 201 KVVADGVNSLRDG---KRSFIIVTHYQRILDYIKP-DYVHVLYQGRIVKSGDFTLVKQLE 256

Query: 308 HKGRLYAKLVKRQ 320
            +G  Y  L ++Q
Sbjct: 257 EQG--YGWLTEQQ 267

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339

 Score = 62.8 bits (152), Expect = 2e-11
 Identities = 31/166 (18%), Positives = 60/166 (36%), Gaps = 24/166 (14%)

Query: 151 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE 210
                E I  V +   L +    S I      ++ +E      +  Y    + +      
Sbjct: 180 SGGTEELIEKVKKYKALAREAALSKI-----GELASEIFAEFTEGKYSEVVVRAEENKVR 234

Query: 211 TLVDDD-------LLSGGQKQ------RIAIARAILRDPAILLLDEATSALDSESEHYVK 257
             V  +        LSGG++       R+A++  +  + ++L+LDE T  LD E    + 
Sbjct: 235 LFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLI 294

Query: 258 GVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI---DDGRIIEV 300
            ++            VI+++H      A D ++ I   +    +EV
Sbjct: 295 TIMERYLKK---IPQVILVSHDEELKDAADHVIRISLENGSSKVEV 337

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148

 Score = 55.5 bits (134), Expect = 8e-10
 Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 10/98 (10%)

Query: 200 EFILSLPCGYETL-VDDDLLSGGQKQRIAIA------RAILRDPAILLLDEATSALDSES 252
           E  + L   +E        LSGG++  + +A        +  + ++L+LDE T  LD E 
Sbjct: 39  ENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEER 98

Query: 253 EHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIV 290
              +  ++            VI+++H      A D ++
Sbjct: 99  RRKLITIMERYLK---KIPQVILVSHDEELKDAADHVI 133

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.7 bits (141), Expect = 1e-09
 Identities = 55/351 (15%), Positives = 97/351 (27%), Gaps = 115/351 (32%)

Query: 18  EQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLM 77
           + + K +L        +   +D++   + S  A     +L   L S Q   E V  Q+ +
Sbjct: 39  QDMPKSIL--------SKEEIDHI---IMSKDAVSGTLRLFWTLLSKQ--EEMV--QKFV 83

Query: 78  GHVQFVNISFHY---------PSRPTV-------PILN--------HVC----------- 102
             V  +N  F           PS  T         + N        +V            
Sbjct: 84  EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143

Query: 103 -LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP---SDGQIYIDGFPLTDLDIRWLREKI 158
            L +   + V I G+ GSGK+     +   Y+     D +I+            WL   +
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF------------WL--NL 189

Query: 159 GFVGQEPQLLQM--DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD 216
                   +L+M   +   I    P      D          H   + L           
Sbjct: 190 KNCNSPETVLEMLQKLLYQID---PNWTSRSD----------HSSNIKLRIHSIQAELRR 236

Query: 217 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVI 276
           LL     +             +L+L    +              +A    CK     ++ 
Sbjct: 237 LLKSKPYEN-----------CLLVLLNVQN----------AKAWNAFNLSCKI----LLT 271

Query: 277 AHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG---RLYAKLVKRQTESL 324
               +  K V   +       I + +H+  L       L  K +  + + L
Sbjct: 272 ----TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 46/269 (17%), Positives = 82/269 (30%), Gaps = 75/269 (27%)

Query: 29  WLIYATWRMVDNLSSLLQSIGATE--KVFQLIDLLPSNQFLSEGVKLQRLMGH-----VQ 81
           W      ++   + S L  +   E  K+F  + + P +  +   + L  +        V 
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL-LSLIWFDVIKSDVM 405

Query: 82  FVNISFH-------YPSRPTVPILN-HVCLTIEANEVVAIVGLSGSGKSTFVN--LLLRL 131
            V    H        P   T+ I + ++ L ++     A+         + V+   + + 
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL-------HRSIVDHYNIPKT 458

Query: 132 YEPS-------DGQIY---------------IDGFPLTDLDIRWLREKI-------GFVG 162
           ++         D   Y               +  F +  LD R+L +KI          G
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518

Query: 163 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSG 220
                LQ  +K    Y C  D K E +      A +  F+         +     DLL  
Sbjct: 519 SILNTLQ-QLKFYKPYICDNDPKYERLV----NAILD-FLPK--IEENLICSKYTDLL-- 568

Query: 221 GQKQRIAIARAILRDPAILLLDEATSALD 249
               RIA     L      + +EA   + 
Sbjct: 569 ----RIA-----LMAEDEAIFEEAHKQVQ 588

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 11/84 (13%)

Query: 216 DLLSGGQKQRI------AIARAILRDPA-ILLLDEATSALDSESEHYVKGVLHALRNDCK 268
           D LSGG++  +      AIA A++ +    ++LDE T  LD      +  +   +++   
Sbjct: 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSI-- 336

Query: 269 TKRTVIVIAHRLSTIKAVDRIVVI 292
               +I+I H        D I+ +
Sbjct: 337 --PQMIIITHHRELEDVADVIINV 358

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* Length = 365

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 9/67 (13%)

Query: 218 LSGGQK------QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 271
           LSGG++        +++A           +DE  S+LD+E++  +  VL  L       +
Sbjct: 280 LSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERL---NK 336

Query: 272 TVIVIAH 278
            ++ I H
Sbjct: 337 VIVFITH 343

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} Length = 208

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 5/56 (8%)

Query: 110 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQ---IYIDGF--PLTDLDIRWLREKIGF 160
           +VA+ G  GSGKST  N L             + +DGF      L+ R L  + G 
Sbjct: 24  LVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} Length = 916

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 33/84 (39%), Positives = 40/84 (47%), Gaps = 14/84 (16%)

Query: 218 LSGGQKQRIAIARAILRDP---AILLLDEATSALDSESEHYVKGVLHALR---NDCKTKR 271
           LSGG+ QRI +A  + +      + +LDE T  L  E    +  VLH L    N      
Sbjct: 806 LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGN------ 859

Query: 272 TVIVIAHRLSTIKAVDRIVVIDDG 295
           TVIVI H L  IK  D I  ID G
Sbjct: 860 TVIVIEHNLDVIKNADHI--IDLG 881

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* Length = 842

 Score = 41.3 bits (98), Expect = 4e-04
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 14/84 (16%)

Query: 218 LSGGQKQRIAIARAILRDP---AILLLDEATSALDSESEHYVKGVLHALR---NDCKTKR 271
           LSGG+ QRI +A  + R      + +LDE T+ L       ++  L  L    N      
Sbjct: 731 LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGN------ 784

Query: 272 TVIVIAHRLSTIKAVDRIVVIDDG 295
           TVI + H++  + A D +  +D G
Sbjct: 785 TVIAVEHKMQVVAASDWV--LDIG 806

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A Length = 392

 Score = 40.7 bits (95), Expect = 4e-04
 Identities = 34/156 (21%), Positives = 59/156 (37%), Gaps = 9/156 (5%)

Query: 111 VAIVGLSGSGKSTFVN-LLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ 169
             I+   G+GKS     LLLR Y      I ID     + + + +  K+G  G       
Sbjct: 38  WTILAKPGAGKSFTAKMLLLREYMQGSRVIIID----PEREYKEMCRKLG--GVWINCTG 91

Query: 170 MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 229
            + K N +    + V+ ED E A  Q+ +   I +L   +   + D  L+  +K  +  A
Sbjct: 92  GEGKINPLQVRLRPVEEEDEENAVFQSPLALHIQTLRTFFSLYLRD--LTDTEKAALEDA 149

Query: 230 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRN 265
              +   A +  D     + ++    VK +      
Sbjct: 150 LVEVYKEAGITWDTDPRGVPNDKWPTVKELYEYCVK 185

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 Length = 178

 Score = 39.6 bits (92), Expect = 4e-04
 Identities = 27/201 (13%), Positives = 52/201 (25%), Gaps = 34/201 (16%)

Query: 111 VAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQM 170
           + I G  G GK+T V  ++          + +     +   R     I   G++      
Sbjct: 3   IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62

Query: 171 DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 230
              S  + G                             Y   V             A   
Sbjct: 63  FFTSKKLVG----------------------------SYGVNVQYFEELAIPILERAYRE 94

Query: 231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIV 290
           A      ++++DE    ++  S+ +   V   + +       V+           V  I 
Sbjct: 95  AKKDRRKVIIIDE-IGKMELFSKKFRDLVRQIMHDP---NVNVVATIPIRDVHPLVKEIR 150

Query: 291 VIDDGRIIEV--GNHAELLHK 309
            +    +IE+   N   +L  
Sbjct: 151 RLPGAVLIELTPENRDVILED 171

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A Length = 972

 Score = 40.6 bits (96), Expect = 5e-04
 Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 14/84 (16%)

Query: 218 LSGGQKQRIAIARAILRDP---AILLLDEATSALDSESEHYVKGVLHALR---NDCKTKR 271
           LSGG+ QR+ +A  + R      + +LDE T+ L  +    +  VLH L    +      
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGD------ 899

Query: 272 TVIVIAHRLSTIKAVDRIVVIDDG 295
           TV+VI H L  IK  D I  ID G
Sbjct: 900 TVLVIEHNLDVIKTADYI--IDLG 921

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} Length = 670

 Score = 40.6 bits (96), Expect = 6e-04
 Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 14/84 (16%)

Query: 218 LSGGQKQRIAIARAILRDP---AILLLDEATSALDSESEHYVKGVLHALR---NDCKTKR 271
           LSGG+ QR+ +A  + R      + +LDE T+ L  +    +  VLH L    +      
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGD------ 597

Query: 272 TVIVIAHRLSTIKAVDRIVVIDDG 295
           TV+VI H L  IK  D I  ID G
Sbjct: 598 TVLVIEHNLDVIKTADYI--IDLG 619

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	325
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	100.0
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	100.0
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	100.0
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	100.0
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	100.0
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	100.0
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	100.0
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	100.0
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	100.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	100.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	100.0
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	100.0
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	100.0
2ghi_A	260	Transport protein; multidrug resistance protein, M	100.0
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	100.0
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	100.0
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	100.0
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	100.0
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	100.0
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	100.0
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	100.0
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	100.0
1ji0_A	240	ABC transporter; ATP binding protein, structural g	100.0
1b0u_A	262	Histidine permease; ABC transporter, transport pro	100.0
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	100.0
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	100.0
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	100.0
1g6h_A	257	High-affinity branched-chain amino acid transport	100.0
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	100.0
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	100.0
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	100.0
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	100.0
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	100.0
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	100.0
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	100.0
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	100.0
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	100.0
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	100.0
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	100.0
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	100.0
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	100.0
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	100.0
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	100.0
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	100.0
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	100.0
1sgw_A	214	Putative ABC transporter; structural genomics, P p	100.0
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	100.0
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	100.0
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	100.0
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	100.0
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	100.0
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	100.0
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	100.0
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	100.0
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	100.0
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	100.0
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	100.0
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	100.0
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	100.0
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	100.0
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	100.0
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	100.0
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	100.0
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	100.0
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	100.0
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.97
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.97
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.96
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.96
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.95
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.95
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.95
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.94
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.94
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.94
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.93
2og2_A	359	Putative signal recognition particle receptor; nuc	99.92
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.92
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	99.92
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.92
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	99.91
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.91
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.91
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.9
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.9
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	99.9
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.89
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	99.88
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.88
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.87
2eyu_A	261	Twitching motility protein PILT; pilus retraction	99.87
4a74_A	231	DNA repair and recombination protein RADA; hydrola	99.87
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	99.86
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.85
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.85
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.85
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	99.85
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.85
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	99.84
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.84
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	99.84
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	99.84
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.83
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	99.83
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	99.83
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	99.83
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	99.83
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.82
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	99.81
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.8
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	99.8
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	99.79
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.78
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	99.78
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	99.76
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.75
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.74
3kta_B	173	Chromosome segregation protein SMC; structural mai	99.73
2cvh_A	220	DNA repair and recombination protein RADB; filamen	99.72
2ewv_A	372	Twitching motility protein PILT; pilus retraction	99.72
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	99.72
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	99.7
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	99.68
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	99.67
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.67
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	99.66
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.65
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	99.65
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.64
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	99.61
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	99.6
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	99.6
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	99.57
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	99.57
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	99.55
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	99.55
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.54
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	99.53
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	99.51
1p9r_A	418	General secretion pathway protein E; bacterial typ	99.5
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	99.5
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	99.49
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.44
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.44
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	99.34
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	99.33
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	99.32
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	99.31
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	99.3
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	99.29
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	99.29
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	99.28
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	99.23
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	99.23
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	99.22
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	99.21
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	99.21
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.2
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.2
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	99.2
2r6a_A	454	DNAB helicase, replicative helicase; replication,	99.13
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	99.11
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	99.03
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	99.01
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	98.97
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	98.89
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.87
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	98.85
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	98.83
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	98.83
3kta_A	182	Chromosome segregation protein SMC; structural mai	98.81
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	98.79
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.77
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	98.77
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.77
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.76
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	98.74
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.74
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.73
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.71
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.7
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	98.7
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.58
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	98.55
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	98.53
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	98.53
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	98.48
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.45
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.41
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.41
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	98.39
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	98.3
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.29
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.28
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.26
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	98.24
2z43_A	324	DNA repair and recombination protein RADA; archaea	98.21
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	98.18
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	98.18
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	98.14
3ice_A	422	Transcription termination factor RHO; transcriptio	98.11
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	98.1
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	98.1
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.09
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.08
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	98.08
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.06
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	98.05
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	98.04
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	98.01
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.97
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.96
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.93
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.92
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.85
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.84
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.8
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.78
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.76
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.75
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	97.73
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	97.71
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.69
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.67
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	97.66
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.64
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.63
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.63
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.61
3bos_A	242	Putative DNA replication factor; P-loop containing	97.58
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.55
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.52
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.51
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.5
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	97.5
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.5
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	97.49
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	97.43
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.4
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.38
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.36
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.35
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.35
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.32
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	97.3
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	97.27
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.25
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.19
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.19
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.15
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.14
1xp8_A	366	RECA protein, recombinase A; recombination, radior	97.04
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	97.02
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.01
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	97.0
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	97.0
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.0
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.97
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.97
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.97
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	96.96
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.95
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	96.91
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.9
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	96.9
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.9
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	96.9
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.89
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.89
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.88
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.88
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	96.83
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.83
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	96.83
1via_A	175	Shikimate kinase; structural genomics, transferase	96.83
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.78
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.76
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.75
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.74
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	96.72
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.71
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.7
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	96.69
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.68
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.66
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.64
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	96.62
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.6
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.55
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.55
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.54
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.53
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.5
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.47
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.45
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.45
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.44
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.43
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.43
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.42
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.42
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.41
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.41
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	96.4
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.4
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.39
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.38
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.37
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.37
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	96.37
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.37
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.37
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.36
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.36
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.36
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.35
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	96.34
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.33
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	96.33
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.33
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.33
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	96.32
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.31
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.31
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.31
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	96.31
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	96.3
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.3
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.29
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	96.29
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.25
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.25
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.24
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	96.23
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.23
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.22
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	96.22
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.22
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	96.22
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	96.21
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.19
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	96.19
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	96.19
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	96.18
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	96.17
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	96.16
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.15
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	96.14
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.14
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.13
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	96.12
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	96.11
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	96.11
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	96.1
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	96.1
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.08
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	96.08
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.06
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	96.06
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	96.06
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.05
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	96.05
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	96.04
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.04
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	96.04
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.03
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	96.03
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	96.02
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.02
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	96.0
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	96.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	95.99
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	95.99
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	95.98
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	95.98
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	95.98
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	95.98
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	95.96
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	95.96
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	95.95
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	95.95
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	95.95
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	95.93
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	95.91
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	95.91
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	95.91
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	95.9
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	95.89
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	95.89
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	95.88
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	95.87
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	95.86
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	95.86
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	95.85
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	95.84
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	95.84
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	95.83
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	95.82
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	95.82
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	95.81
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	95.8
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	95.8
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	95.8
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	95.79
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	95.79
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.78
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	95.78
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	95.78
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	95.78
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	95.78
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	95.78
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	95.77
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	95.76
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	95.76
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	95.76
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	95.75
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.75
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	95.74
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	95.74
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	95.73
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.73
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	95.72
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	95.7
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	95.7
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	95.7
3llu_A	196	RAS-related GTP-binding protein C; structural geno	95.69
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	95.69
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	95.68
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.67
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	95.67
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	95.66
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	95.65
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	95.65
2fh5_B	214	SR-beta, signal recognition particle receptor beta	95.64
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.62
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	95.61
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	95.61
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	95.6
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	95.59
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	95.58
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	95.57
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	95.54
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	95.54
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	95.53
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	95.53
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.52
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.51
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	95.5
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	95.48
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	95.44
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	95.44
2hf9_A	226	Probable hydrogenase nickel incorporation protein	95.44
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	95.43
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.42
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	95.35
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	95.31
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	95.3
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	95.26
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	95.24
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.23
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.22
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	95.2
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	95.19
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	95.18
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	95.18
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	95.17
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	95.09
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	94.98
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	94.93
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	94.9
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	94.85
2chg_A	226	Replication factor C small subunit; DNA-binding pr	94.84
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	94.77
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	94.66
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	94.63
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	94.53
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	94.52
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	94.52
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	94.52
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	94.51
1wxq_A	397	GTP-binding protein; structural genomics, riken st	94.51
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	94.5
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	94.48
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	94.48
3pvs_A	447	Replication-associated recombination protein A; ma	94.48
2qgz_A	308	Helicase loader, putative primosome component; str	94.47
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	94.45
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	94.44
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	93.44
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	94.35
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	94.32
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	94.3
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	94.28
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	94.27
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	94.24
2ck3_D	482	ATP synthase subunit beta\, mitochondrial; hydrola	94.23
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	94.22
3l0o_A	427	Transcription termination factor RHO; helicase, RH	94.21
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	94.21

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=1.2e-66  Score=525.42  Aligned_cols=315  Identities=30%  Similarity=0.539  Sum_probs=281.8

Q ss_pred             EeeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEE
Q 020527            2 AVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQ   81 (325)
Q Consensus         2 ~~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~   81 (325)
                      ++|+|++++..|.+|+|.++++..|...+..|+..+...+..+.++..+++|+.++++.+++..........++..+.|+
T Consensus       264 vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~  343 (587)
T 3qf4_A          264 VLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADNALALPNVEGSVS  343 (587)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCTTCBCCSCCCCCEE
T ss_pred             HHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCccccCCCCCcEE
Confidence            35678999999999999999999999999999999999999999999999999999998765332211111122234699


Q ss_pred             EEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 020527           82 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV  161 (325)
Q Consensus        82 ~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v  161 (325)
                      ++||+|+|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+...+|++|+||
T Consensus       344 ~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v  422 (587)
T 3qf4_A          344 FENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAV  422 (587)
T ss_dssp             EEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEE
T ss_pred             EEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEE
Confidence            99999999753 35799999999999999999999999999999999999999999999999999988888899999999


Q ss_pred             ccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEE
Q 020527          162 GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAIL  239 (325)
Q Consensus       162 ~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~ll  239 (325)
                      ||++.+|++||+||+.++.+ ...++++.++++.+++.++++.+|.|+++.++.  .+||||||||++|||||+++|++|
T Consensus       423 ~Q~~~lf~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~il  501 (587)
T 3qf4_A          423 PQETVLFSGTIKENLKWGRE-DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVL  501 (587)
T ss_dssp             CSSCCCCSEEHHHHHTTTCS-SCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEE
T ss_pred             CCCCcCcCccHHHHHhccCC-CCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEE
Confidence            99999999999999999843 456777888999999999999999999988764  689999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHHH
Q 020527          240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKR  319 (325)
Q Consensus       240 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~  319 (325)
                      |||||||+||+.+++.+.+.++++.    +|+|+|+||||++.+..||||++|++|++++.|++++++++++.|++++..
T Consensus       502 llDEpts~LD~~~~~~i~~~l~~~~----~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~  577 (587)
T 3qf4_A          502 ILDDCTSSVDPITEKRILDGLKRYT----KGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCKPYREIYES  577 (587)
T ss_dssp             EEESCCTTSCHHHHHHHHHHHHHHS----TTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHHCHHHHHHHHH
T ss_pred             EEECCcccCCHHHHHHHHHHHHHhC----CCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHH
Confidence            9999999999999999999999873    478999999999999889999999999999999999999999999999987


Q ss_pred             hhh
Q 020527          320 QTE  322 (325)
Q Consensus       320 ~~~  322 (325)
                      |..
T Consensus       578 ~~~  580 (587)
T 3qf4_A          578 QFG  580 (587)
T ss_dssp             HC-
T ss_pred             Hhc
Confidence            753

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=100.00  E-value=5.3e-67  Score=527.47  Aligned_cols=313  Identities=42%  Similarity=0.641  Sum_probs=281.3

Q ss_pred             EeeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEE
Q 020527            2 AVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQ   81 (325)
Q Consensus         2 ~~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~   81 (325)
                      ++++|++++..|.+|+|.++++..|...+..|+..+...+..+.++..+++|+.++++.+++........+.+...+.|+
T Consensus       262 v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~  341 (578)
T 4a82_A          262 VIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRID  341 (578)
T ss_dssp             HHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCCTTCCCCCCCSCCEE
T ss_pred             HHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccccCCCCCeEE
Confidence            35679999999999999999999999999999999999999999999999999999998765432111111122234699


Q ss_pred             EEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 020527           82 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV  161 (325)
Q Consensus        82 ~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v  161 (325)
                      ++||+|+|++. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+...+|++||||
T Consensus       342 ~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v  420 (578)
T 4a82_A          342 IDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLV  420 (578)
T ss_dssp             EEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEE
T ss_pred             EEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEE
Confidence            99999999753 34799999999999999999999999999999999999999999999999999988888899999999


Q ss_pred             ccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEE
Q 020527          162 GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAIL  239 (325)
Q Consensus       162 ~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~ll  239 (325)
                      ||+|.+|+.||+||+.++.+ ...++++.++++.+++.++++.+|.|+++.++.  .+||||||||++|||||+++|+++
T Consensus       421 ~Q~~~l~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~il  499 (578)
T 4a82_A          421 QQDNILFSDTVKENILLGRP-TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPIL  499 (578)
T ss_dssp             CSSCCCCSSBHHHHHGGGCS-SCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEE
T ss_pred             eCCCccCcccHHHHHhcCCC-CCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEE
Confidence            99999999999999999853 455777888999999999999999999998874  689999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHHH
Q 020527          240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKR  319 (325)
Q Consensus       240 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~  319 (325)
                      |||||||+||+.+++.+.+.++++.    +++|+|+||||++.+..||||++|++|++++.|++++++++++.|+++++.
T Consensus       500 llDEpts~LD~~~~~~i~~~l~~~~----~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~~~~  575 (578)
T 4a82_A          500 ILDEATSALDLESESIIQEALDVLS----KDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSI  575 (578)
T ss_dssp             EEESTTTTCCHHHHHHHHHHHHHHT----TTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHHHHHTT
T ss_pred             EEECccccCCHHHHHHHHHHHHHHc----CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHh
Confidence            9999999999999999999999884    367999999999999889999999999999999999999988899999876


Q ss_pred             h
Q 020527          320 Q  320 (325)
Q Consensus       320 ~  320 (325)
                      |
T Consensus       576 q  576 (578)
T 4a82_A          576 Q  576 (578)
T ss_dssp             T
T ss_pred             h
Confidence            5

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=100.00  E-value=1.2e-65  Score=518.12  Aligned_cols=313  Identities=38%  Similarity=0.596  Sum_probs=280.3

Q ss_pred             EeeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEE
Q 020527            2 AVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQ   81 (325)
Q Consensus         2 ~~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~   81 (325)
                      ++++|+|++..|.+|+|.++++..+...+..|+..+...+..++++..+++|+.++++.+++....  ..+.++..+.|+
T Consensus       266 i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~--~~~~~~~~~~i~  343 (582)
T 3b5x_A          266 VLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNG--KYEAERVNGEVD  343 (582)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCC--CCCCCCCCCeEE
Confidence            356789999999999999999999999999999999999999999999999999999876653211  111111234699


Q ss_pred             EEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 020527           82 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV  161 (325)
Q Consensus        82 ~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v  161 (325)
                      ++||+|+|+++ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+||+++.+.+...+|++|+||
T Consensus       344 ~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v  422 (582)
T 3b5x_A          344 VKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALV  422 (582)
T ss_pred             EEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEE
Confidence            99999999742 24699999999999999999999999999999999999999999999999999888888889999999


Q ss_pred             ccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEE
Q 020527          162 GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAIL  239 (325)
Q Consensus       162 ~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~ll  239 (325)
                      ||+|.+|+.||+||+.++......++++.++++.++++++++++|.|+++.++.  .+||||||||++|||||+++|++|
T Consensus       423 ~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~il  502 (582)
T 3b5x_A          423 SQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVL  502 (582)
T ss_pred             cCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEE
Confidence            999999999999999997422355677889999999999999999999998874  689999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHHH
Q 020527          240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKR  319 (325)
Q Consensus       240 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~  319 (325)
                      |||||||+||+.+++.+.+.++++.    +|+|+|+||||++.+..||+|++|++|++++.|++++++++++.|+++++.
T Consensus       503 llDEpts~LD~~~~~~i~~~l~~~~----~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~  578 (582)
T 3b5x_A          503 ILDEATSALDTESERAIQAALDELQ----KNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHRI  578 (582)
T ss_pred             EEECccccCCHHHHHHHHHHHHHHc----CCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHH
Confidence            9999999999999999999999884    378999999999998889999999999999999999999988899999987


Q ss_pred             hh
Q 020527          320 QT  321 (325)
Q Consensus       320 ~~  321 (325)
                      |.
T Consensus       579 q~  580 (582)
T 3b5x_A          579 QF  580 (582)
T ss_pred             hh
Confidence            74

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=100.00  E-value=1.1e-65  Score=558.04  Aligned_cols=315  Identities=42%  Similarity=0.612  Sum_probs=288.7

Q ss_pred             EeeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccc-cccccCCcccE
Q 020527            2 AVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSE-GVKLQRLMGHV   80 (325)
Q Consensus         2 ~~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~i   80 (325)
                      ++|+|++++..|.+|+|.+++++.++..+..|+..+...+..++++..+++|+.++++.+|+...... ........+.|
T Consensus       337 ~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I  416 (1321)
T 4f4c_A          337 AFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDI  416 (1321)
T ss_dssp             HHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCE
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccccCCCCCCcE
Confidence            35789999999999999999999999999999999999999999999999999999998776432221 11122234579


Q ss_pred             EEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 020527           81 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF  160 (325)
Q Consensus        81 ~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~  160 (325)
                      +++||+|+|+++++.++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.+++..++|++|||
T Consensus       417 ~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~  496 (1321)
T 4f4c_A          417 TVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAV  496 (1321)
T ss_dssp             EEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEE
T ss_pred             EEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccc
Confidence            99999999986555689999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCE
Q 020527          161 VGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAI  238 (325)
Q Consensus       161 v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~l  238 (325)
                      |+|+|.+|++||+|||.||. +..+++++.++++.++++++++.+|.|++|.+++  .+||||||||++||||++++|+|
T Consensus       497 v~Q~~~Lf~~TI~eNI~~g~-~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~I  575 (1321)
T 4f4c_A          497 VSQEPALFNCTIEENISLGK-EGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKI  575 (1321)
T ss_dssp             ECSSCCCCSEEHHHHHHTTC-TTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSE
T ss_pred             cCCcceeeCCchhHHHhhhc-ccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCE
Confidence            99999999999999999995 3567889999999999999999999999999985  58999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHH
Q 020527          239 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK  318 (325)
Q Consensus       239 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~  318 (325)
                      ||||||||+||+++++.+.+.|.++.    +|+|+|+|||+++.++.||+|++|++|+|++.|+|++++++++.|+++++
T Consensus       576 liLDE~tSaLD~~te~~i~~~l~~~~----~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~~~g~y~~l~~  651 (1321)
T 4f4c_A          576 LLLDEATSALDAESEGIVQQALDKAA----KGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLVT  651 (1321)
T ss_dssp             EEEESTTTTSCTTTHHHHHHHHHHHH----TTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHHHTTTCHHHHHHH
T ss_pred             EEEecccccCCHHHHHHHHHHHHHHh----CCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHHHhhhHHHHHHH
Confidence            99999999999999999999999886    37899999999999999999999999999999999999999999999998


Q ss_pred             Hhh
Q 020527          319 RQT  321 (325)
Q Consensus       319 ~~~  321 (325)
                      .|.
T Consensus       652 ~q~  654 (1321)
T 4f4c_A          652 AQT  654 (1321)
T ss_dssp             HHH
T ss_pred             hhh
Confidence            763

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=100.00  E-value=1.5e-65  Score=517.41  Aligned_cols=312  Identities=38%  Similarity=0.598  Sum_probs=279.7

Q ss_pred             eeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEEE
Q 020527            3 VLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQF   82 (325)
Q Consensus         3 ~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   82 (325)
                      +++|++++..|.+|+|.++++..+...+..|+..+...+..+..+..+++|+.++++.+++....  ..+.++..+.|++
T Consensus       267 ~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~--~~~~~~~~~~i~~  344 (582)
T 3b60_A          267 LYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEG--KRVIDRATGDLEF  344 (582)
T ss_dssp             HHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCCC--CBCCSCCCCCEEE
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC--CCCCCCCCCcEEE
Confidence            46788999999999999999999999999999999999999999999999999999987653211  1111122346999


Q ss_pred             EEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEc
Q 020527           83 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG  162 (325)
Q Consensus        83 ~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~  162 (325)
                      +||+|+|+++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+...+|++|+|||
T Consensus       345 ~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~  423 (582)
T 3b60_A          345 RNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVS  423 (582)
T ss_dssp             EEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEEC
T ss_pred             EEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEc
Confidence            9999999742 146999999999999999999999999999999999999999999999999998888888899999999


Q ss_pred             cCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEE
Q 020527          163 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILL  240 (325)
Q Consensus       163 Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~lll  240 (325)
                      |+|.+|+.||+||+.++......++++.++++.++++++++++|.|+++.++.  .+||||||||++|||||+++|++||
T Consensus       424 Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~ill  503 (582)
T 3b60_A          424 QNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILI  503 (582)
T ss_dssp             SSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEE
T ss_pred             cCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEE
Confidence            99999999999999997423455778889999999999999999999998874  6899999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHh
Q 020527          241 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQ  320 (325)
Q Consensus       241 lDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~  320 (325)
                      ||||||+||+.+++.+.+.++++.    +|+|+|+||||++.++.||+|++|++|++++.|++++++++++.|+++++.|
T Consensus       504 lDEpts~LD~~~~~~i~~~l~~~~----~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~q  579 (582)
T 3b60_A          504 LDEATSALDTESERAIQAALDELQ----KNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKMQ  579 (582)
T ss_dssp             EETTTSSCCHHHHHHHHHHHHHHH----TTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHHHHHHT
T ss_pred             EECccccCCHHHHHHHHHHHHHHh----CCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHHHh
Confidence            999999999999999999999985    2789999999999988899999999999999999999998888899999876


Q ss_pred             h
Q 020527          321 T  321 (325)
Q Consensus       321 ~  321 (325)
                      .
T Consensus       580 ~  580 (582)
T 3b60_A          580 F  580 (582)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=3.4e-66  Score=523.38  Aligned_cols=312  Identities=35%  Similarity=0.610  Sum_probs=281.1

Q ss_pred             eeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEEE
Q 020527            3 VLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQF   82 (325)
Q Consensus         3 ~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   82 (325)
                      +++|+|++..|.+|+|.+++++.|...+..|+..+...+..++.+..+++|+.++++.+++...+ .....++..+.|++
T Consensus       279 ~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~-~~~~~~~~~~~i~~  357 (598)
T 3qf4_B          279 SGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDP-DAVELREVRGEIEF  357 (598)
T ss_dssp             HHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCS-SCCCCCSCCCCEEE
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CCCCCCCCCCeEEE
Confidence            56789999999999999999999999999999999999999999999999999999987654221 11111223346999


Q ss_pred             EEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEc
Q 020527           83 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG  162 (325)
Q Consensus        83 ~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~  162 (325)
                      +||+|+|+++  .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+...+|++|+|||
T Consensus       358 ~~v~~~y~~~--~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~  435 (598)
T 3qf4_B          358 KNVWFSYDKK--KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVL  435 (598)
T ss_dssp             EEEECCSSSS--SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEEC
T ss_pred             EEEEEECCCC--CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEe
Confidence            9999999753  46999999999999999999999999999999999999999999999999999988888999999999


Q ss_pred             cCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEE
Q 020527          163 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILL  240 (325)
Q Consensus       163 Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~lll  240 (325)
                      |+|.+|++||+||+.++.+ ...++++.++++.++++++++.+|.|+++.++.  .+||||||||++|||||+++|++||
T Consensus       436 Q~~~lf~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~ill  514 (598)
T 3qf4_B          436 QDTILFSTTVKENLKYGNP-GATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILI  514 (598)
T ss_dssp             TTCCCCSSBHHHHHHSSST-TCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred             CCCccccccHHHHHhcCCC-CCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence            9999999999999999843 345567788888999999999999999988863  6899999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHh
Q 020527          241 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQ  320 (325)
Q Consensus       241 lDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~  320 (325)
                      ||||||+||+.++..+.+.++++.    +|+|+|+||||++.+..||+|++|++|++++.|++++++++++.|++++..|
T Consensus       515 lDEpts~LD~~~~~~i~~~l~~~~----~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~  590 (598)
T 3qf4_B          515 LDEATSNVDTKTEKSIQAAMWKLM----EGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYELFTSQ  590 (598)
T ss_dssp             ECCCCTTCCHHHHHHHHHHHHHHH----TTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHTTCHHHHHHHHH
T ss_pred             EECCccCCCHHHHHHHHHHHHHHc----CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHH
Confidence            999999999999999999999985    3789999999999998899999999999999999999999999999999887


Q ss_pred             hh
Q 020527          321 TE  322 (325)
Q Consensus       321 ~~  322 (325)
                      ..
T Consensus       591 ~~  592 (598)
T 3qf4_B          591 YG  592 (598)
T ss_dssp             HG
T ss_pred             hh
Confidence            54

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=100.00  E-value=1.3e-65  Score=478.06  Aligned_cols=274  Identities=40%  Similarity=0.597  Sum_probs=238.6

Q ss_pred             HHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCCh
Q 020527           41 LSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSG  120 (325)
Q Consensus        41 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsG  120 (325)
                      ...++.+..+++|++++++.+++..............+.|+++||+|+|++.  .++|+||||+|++||++||+||||||
T Consensus        15 ~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~--~~vL~~isl~i~~Ge~vaivG~sGsG   92 (306)
T 3nh6_A           15 VPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADG--RETLQDVSFTVMPGQTLALVGPSGAG   92 (306)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESSTT--CEEEEEEEEEECTTCEEEEESSSCHH
T ss_pred             chhHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCCC--CceeeeeeEEEcCCCEEEEECCCCch
Confidence            3456678888999999998765432211111111223469999999999643  46999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHH
Q 020527          121 KSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHE  200 (325)
Q Consensus       121 KSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~  200 (325)
                      ||||+++|+|+++|++|+|.++|+++..++...+|++||||||++.+|++||+|||.++.. ....+++.++++.+++.+
T Consensus        93 KSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~-~~~~~~~~~~~~~~~l~~  171 (306)
T 3nh6_A           93 KSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRV-TAGNDEVEAAAQAAGIHD  171 (306)
T ss_dssp             HHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTST-TCCHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcc-cCCHHHHHHHHHHhCcHH
Confidence            9999999999999999999999999999988889999999999999999999999999853 345677888999999999


Q ss_pred             HHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEec
Q 020527          201 FILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH  278 (325)
Q Consensus       201 ~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH  278 (325)
                      +++.+|.|+++.++.  .+|||||||||+|||||+++|+|||||||||+||+.++..+++.|.++.+    ++|+|+|||
T Consensus       172 ~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~----~~Tvi~itH  247 (306)
T 3nh6_A          172 AIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA----NRTTIVVAH  247 (306)
T ss_dssp             HHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT----TSEEEEECC
T ss_pred             HHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC----CCEEEEEEc
Confidence            999999999988764  68999999999999999999999999999999999999999999999853    679999999


Q ss_pred             CchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHhh
Q 020527          279 RLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQT  321 (325)
Q Consensus       279 ~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~  321 (325)
                      |++.+..||+|++|++|+|++.|+++++++..+.|++++..|.
T Consensus       248 ~l~~~~~aD~i~vl~~G~iv~~G~~~el~~~~~~y~~l~~~q~  290 (306)
T 3nh6_A          248 RLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQQ  290 (306)
T ss_dssp             SHHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHHHH
T ss_pred             ChHHHHcCCEEEEEECCEEEEECCHHHHHhcChHHHHHHHHHH
Confidence            9999988999999999999999999999999999999998764

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=100.00  E-value=3.9e-66  Score=561.48  Aligned_cols=316  Identities=40%  Similarity=0.587  Sum_probs=267.7

Q ss_pred             eeehHHHHhcCCcCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccE
Q 020527            3 VLLGGMSIMIGQVSPEQLTK--YVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHV   80 (325)
Q Consensus         3 ~~~g~~~v~~g~it~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i   80 (325)
                      +++|++++..|..+++.+..  ++.+......++..+...+..+..+..+++|+.++++.+++..........++..+.|
T Consensus       998 ~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~g~I 1077 (1321)
T 4f4c_A          998 YRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSLAGEKKKLYGKV 1077 (1321)
T ss_dssp             HHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTCCCSBCCCCCCCE
T ss_pred             HHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCCccCCCCCCCCCCeE
Confidence            46688888888877665533  3333444445666777888899999999999999999877643322222223445679


Q ss_pred             EEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 020527           81 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF  160 (325)
Q Consensus        81 ~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~  160 (325)
                      +++||+|+|+++++.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+.+++...+|++|+|
T Consensus      1078 ~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~ 1157 (1321)
T 4f4c_A         1078 IFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAI 1157 (1321)
T ss_dssp             EEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEE
T ss_pred             EEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEE
Confidence            99999999986655679999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EccCCcCccccHHHHHhcCC-CCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCC
Q 020527          161 VGQEPQLLQMDIKSNIMYGC-PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPA  237 (325)
Q Consensus       161 v~Q~~~l~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~  237 (325)
                      |||+|.+|++||+|||.||. +...++++++++++.+++++++..+|.|+++.+++  .+||||||||+||||||+++|+
T Consensus      1158 V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ 1237 (1321)
T 4f4c_A         1158 VSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPK 1237 (1321)
T ss_dssp             ECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCS
T ss_pred             ECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999985 34567889999999999999999999999999974  6899999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHH
Q 020527          238 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV  317 (325)
Q Consensus       238 llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~  317 (325)
                      |||||||||+||+++++.+++.|+++.    +|+|+|+|+|+++.+..||||+||++|+|+|.|+|++|+++++.|++++
T Consensus      1238 ILiLDEaTSaLD~~tE~~Iq~~l~~~~----~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~~~g~y~~L~ 1313 (1321)
T 4f4c_A         1238 ILLLDEATSALDTESEKVVQEALDRAR----EGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKGAYYKLT 1313 (1321)
T ss_dssp             EEEEESCCCSTTSHHHHHHHHHHTTTS----SSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHHCC-------
T ss_pred             EEEEeCccccCCHHHHHHHHHHHHHHc----CCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHH
Confidence            999999999999999999999998774    4789999999999999999999999999999999999999999999999


Q ss_pred             HHhhh
Q 020527          318 KRQTE  322 (325)
Q Consensus       318 ~~~~~  322 (325)
                      +.|..
T Consensus      1314 ~~Q~~ 1318 (1321)
T 4f4c_A         1314 QKQMT 1318 (1321)
T ss_dssp             -----
T ss_pred             HHHHh
Confidence            98753

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=100.00  E-value=9e-62  Score=526.15  Aligned_cols=314  Identities=45%  Similarity=0.660  Sum_probs=280.4

Q ss_pred             EeeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcccc-ccccccCCcccE
Q 020527            2 AVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS-EGVKLQRLMGHV   80 (325)
Q Consensus         2 ~~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~i   80 (325)
                      ++|+|++++..|.+|+|.+++++.+...+..|+..+...+..++.+..+++|+.++++.+++..... .........+.|
T Consensus       309 ~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i  388 (1284)
T 3g5u_A          309 AFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNL  388 (1284)
T ss_dssp             HHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCE
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeE
Confidence            4678999999999999999988888878888999999999999999999999999998876532211 111112234579


Q ss_pred             EEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 020527           81 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF  160 (325)
Q Consensus        81 ~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~  160 (325)
                      +++||+|+|+++.+.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++..++..++|++|||
T Consensus       389 ~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~  468 (1284)
T 3g5u_A          389 EFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGV  468 (1284)
T ss_dssp             EEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEE
T ss_pred             EEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEE
Confidence            99999999986433579999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCE
Q 020527          161 VGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAI  238 (325)
Q Consensus       161 v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~l  238 (325)
                      |||+|.+|++||+|||.++.+ ...++++.++++.+++.++++++|.|+++.++.  .+|||||||||+|||||+++|+|
T Consensus       469 v~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~i  547 (1284)
T 3g5u_A          469 VSQEPVLFATTIAENIRYGRE-DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKI  547 (1284)
T ss_dssp             ECSSCCCCSSCHHHHHHHHCS-SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSE
T ss_pred             EcCCCccCCccHHHHHhcCCC-CCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCE
Confidence            999999999999999999843 456788889999999999999999999998874  68999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHH
Q 020527          239 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK  318 (325)
Q Consensus       239 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~  318 (325)
                      ||||||||+||+.+++.+.+.++.+.    +|+|+|+||||++.+..||+|++|++|++++.|++++++++++.|.+++.
T Consensus       548 liLDEpts~LD~~~~~~i~~~l~~~~----~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~  623 (1284)
T 3g5u_A          548 LLLDEATSALDTESEAVVQAALDKAR----EGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVM  623 (1284)
T ss_dssp             EEEESTTCSSCHHHHHHHHHHHHHHH----TTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHHHHHTTSHHHHHHH
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHc----CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHH
Confidence            99999999999999999999998875    37899999999999988999999999999999999999999889988886


Q ss_pred             Hh
Q 020527          319 RQ  320 (325)
Q Consensus       319 ~~  320 (325)
                      .+
T Consensus       624 ~~  625 (1284)
T 3g5u_A          624 TQ  625 (1284)
T ss_dssp             HT
T ss_pred             Hh
Confidence            65

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=100.00  E-value=1.6e-60  Score=516.42  Aligned_cols=316  Identities=41%  Similarity=0.639  Sum_probs=279.1

Q ss_pred             eeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccc-cccccCCcccEE
Q 020527            3 VLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSE-GVKLQRLMGHVQ   81 (325)
Q Consensus         3 ~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~i~   81 (325)
                      +|+|++++..|.++++.++++..+......++..+...+..+.++..+++|+.++++.+++...... ....+...+.|+
T Consensus       953 ~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~ 1032 (1284)
T 3g5u_A          953 FRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQ 1032 (1284)
T ss_dssp             HHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCSSSSCCSSCCCTTTTSCCEE
T ss_pred             HHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCcEE
Confidence            5678899999999999999888888888888888877778888999999999999998765432111 111122235699


Q ss_pred             EEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 020527           82 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV  161 (325)
Q Consensus        82 ~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v  161 (325)
                      ++||+|+|+++.+.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++...+...+|++|+||
T Consensus      1033 ~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 1112 (1284)
T 3g5u_A         1033 FSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIV 1112 (1284)
T ss_dssp             EEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEE
T ss_pred             EEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEE
Confidence            99999999754334699999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcCccccHHHHHhcCCCC-CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCE
Q 020527          162 GQEPQLLQMDIKSNIMYGCPK-DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAI  238 (325)
Q Consensus       162 ~Q~~~l~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~l  238 (325)
                      ||+|.+|++||+||+.++.+. ...++++.++++.++++++++++|.|+++.++.  .+|||||||||+|||||+++|+|
T Consensus      1113 ~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~i 1192 (1284)
T 3g5u_A         1113 SQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHI 1192 (1284)
T ss_dssp             ESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSS
T ss_pred             CCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCE
Confidence            999999999999999997532 345778888999999999999999999998874  68999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHH
Q 020527          239 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK  318 (325)
Q Consensus       239 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~  318 (325)
                      ||||||||+||+.+++.+.+.++++.    .|+|+|+||||++.+..||||++|++|++++.|+|++++++++.|+++++
T Consensus      1193 LiLDEpTs~lD~~~~~~i~~~l~~~~----~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~~~~g~y~~l~~ 1268 (1284)
T 3g5u_A         1193 LLLDEATSALDTESEKVVQEALDKAR----EGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVS 1268 (1284)
T ss_dssp             EEEESCSSSCCHHHHHHHHHHHHHHS----SSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHHHHHHSCSHHHHHHH
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHhC----CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHH
Confidence            99999999999999999999998863    47899999999999988999999999999999999999999999999998


Q ss_pred             Hhhh
Q 020527          319 RQTE  322 (325)
Q Consensus       319 ~~~~  322 (325)
                      .|..
T Consensus      1269 ~q~~ 1272 (1284)
T 3g5u_A         1269 VQAG 1272 (1284)
T ss_dssp             HHC-
T ss_pred             HHhh
Confidence            8753

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=100.00  E-value=3.4e-59  Score=423.40  Aligned_cols=236  Identities=48%  Similarity=0.745  Sum_probs=210.6

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .|+++||+|+|++. ..++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+|++|
T Consensus         7 ~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i   85 (247)
T 2ff7_A            7 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV   85 (247)
T ss_dssp             EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred             ceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE
Confidence            48999999999321 13699999999999999999999999999999999999999999999999999877777778889


Q ss_pred             EEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCC
Q 020527          159 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDP  236 (325)
Q Consensus       159 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p  236 (325)
                      +|+||++.+|+.||+||+.++.. ....+.+.++++.+++.++++++|.++.+...  ..+|||||||||+|||||+.+|
T Consensus        86 ~~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p  164 (247)
T 2ff7_A           86 GVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP  164 (247)
T ss_dssp             EEECSSCCCTTSBHHHHHTTTCT-TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred             EEEeCCCccccccHHHHHhccCC-CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence            99999999988899999998742 33456677888889999999998877777665  3689999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhc-CHHHHH
Q 020527          237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK-GRLYAK  315 (325)
Q Consensus       237 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~~~  315 (325)
                      ++|||||||++||+.++..+.+.|+++.    +|+|||+||||++.+..||++++|++|++++.|++++++.. ...|.+
T Consensus       165 ~lllLDEPts~LD~~~~~~i~~~l~~~~----~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~  240 (247)
T 2ff7_A          165 KILIFDEATSALDYESEHVIMRNMHKIC----KGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSY  240 (247)
T ss_dssp             SEEEECCCCSCCCHHHHHHHHHHHHHHH----TTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHH
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHc----CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHH
Confidence            9999999999999999999999999984    27899999999998877999999999999999999999877 677888


Q ss_pred             HHHHh
Q 020527          316 LVKRQ  320 (325)
Q Consensus       316 ~~~~~  320 (325)
                      ++..+
T Consensus       241 l~~~~  245 (247)
T 2ff7_A          241 LYQLQ  245 (247)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            87654

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=100.00  E-value=5.4e-59  Score=427.46  Aligned_cols=241  Identities=38%  Similarity=0.659  Sum_probs=207.6

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .|+++||+++|++....++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...++++|
T Consensus        16 ~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i   95 (271)
T 2ixe_A           16 LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQV   95 (271)
T ss_dssp             CEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHE
T ss_pred             eEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccE
Confidence            59999999999751124699999999999999999999999999999999999999999999999998776666678889


Q ss_pred             EEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCC
Q 020527          159 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDP  236 (325)
Q Consensus       159 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p  236 (325)
                      +||||++.+|+.||+||+.++.......+.+....+..++.++++.++.++.+...  ..+|||||||||+|||||+.+|
T Consensus        96 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p  175 (271)
T 2ixe_A           96 AAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKP  175 (271)
T ss_dssp             EEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCC
T ss_pred             EEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCC
Confidence            99999999988899999998743222214455566667788888888766655443  4689999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHH
Q 020527          237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKL  316 (325)
Q Consensus       237 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~  316 (325)
                      ++|||||||++||+.++..+.+.|+++.++  .|+|||+||||++.+..||+|++|++|++++.|++++++.....|.++
T Consensus       176 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~--~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~  253 (271)
T 2ixe_A          176 RLLILDNATSALDAGNQLRVQRLLYESPEW--ASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSM  253 (271)
T ss_dssp             SEEEEESTTTTCCHHHHHHHHHHHHHCTTT--TTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHH
T ss_pred             CEEEEECCccCCCHHHHHHHHHHHHHHHhh--cCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCcHHHHHH
Confidence            999999999999999999999999998542  488999999999988779999999999999999999998877788888


Q ss_pred             HHHhh
Q 020527          317 VKRQT  321 (325)
Q Consensus       317 ~~~~~  321 (325)
                      +..+.
T Consensus       254 ~~~~~  258 (271)
T 2ixe_A          254 VEALA  258 (271)
T ss_dssp             HHC--
T ss_pred             HHHhh
Confidence            76653

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=100.00  E-value=5.6e-58  Score=418.35  Aligned_cols=237  Identities=40%  Similarity=0.667  Sum_probs=208.7

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .|+++||+++|++....++|+|+||+|++||+++|+||||||||||+|+|+|+++| +|+|.++|+++...+...+|++|
T Consensus        17 ~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i   95 (260)
T 2ghi_A           17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSII   95 (260)
T ss_dssp             CEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTE
T ss_pred             eEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccE
Confidence            59999999999753223699999999999999999999999999999999999987 89999999998776667778899


Q ss_pred             EEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCC
Q 020527          159 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDP  236 (325)
Q Consensus       159 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p  236 (325)
                      +|+||++.+|+.||+||+.++.. ....+++.++++..++.++++.++.++++..+  ..+|||||||||+|||||+.+|
T Consensus        96 ~~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p  174 (260)
T 2ghi_A           96 GIVPQDTILFNETIKYNILYGKL-DATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP  174 (260)
T ss_dssp             EEECSSCCCCSEEHHHHHHTTCT-TCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred             EEEcCCCcccccCHHHHHhccCC-CCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence            99999999998899999998642 23455667778888888888888877666443  4689999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHH
Q 020527          237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKL  316 (325)
Q Consensus       237 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~  316 (325)
                      ++|||||||++||+.++..+.+.|+++.    +++|||+||||++.+..||++++|++|++++.|++++++.....|.++
T Consensus       175 ~lllLDEPts~LD~~~~~~i~~~l~~l~----~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~  250 (260)
T 2ghi_A          175 KIVIFDEATSSLDSKTEYLFQKAVEDLR----KNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEM  250 (260)
T ss_dssp             SEEEEECCCCTTCHHHHHHHHHHHHHHT----TTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHH
T ss_pred             CEEEEECccccCCHHHHHHHHHHHHHhc----CCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHHH
Confidence            9999999999999999999999999984    268999999999988779999999999999999999998877788888


Q ss_pred             HHHhh
Q 020527          317 VKRQT  321 (325)
Q Consensus       317 ~~~~~  321 (325)
                      +..+.
T Consensus       251 ~~~~~  255 (260)
T 2ghi_A          251 WNMQS  255 (260)
T ss_dssp             HHHHH
T ss_pred             HHhhh
Confidence            87654

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=100.00  E-value=2.6e-59  Score=423.17  Aligned_cols=235  Identities=42%  Similarity=0.670  Sum_probs=207.5

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      |+++||+|+|+++  .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+|++|+
T Consensus         2 l~~~~l~~~y~~~--~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~   79 (243)
T 1mv5_A            2 LSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG   79 (243)
T ss_dssp             EEEEEEEECSSSS--SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred             EEEEEEEEEeCCC--CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence            7899999999422  46999999999999999999999999999999999999999999999999997665556678899


Q ss_pred             EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCCC
Q 020527          160 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPA  237 (325)
Q Consensus       160 ~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p~  237 (325)
                      |+||++.+|+.||+||+.++.......+.+.++++..++.++++++|.++.+..+  ..+|||||||||+|||||+++|+
T Consensus        80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~  159 (243)
T 1mv5_A           80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK  159 (243)
T ss_dssp             EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred             EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence            9999999998899999998732234456677788888888888888777766554  36899999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHH
Q 020527          238 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV  317 (325)
Q Consensus       238 llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~  317 (325)
                      +|||||||++||+.+++.+.+.|+++.    +|+|||++|||++.+..||++++|++|++++.|++++++.....|.+++
T Consensus       160 lllLDEPts~LD~~~~~~i~~~l~~~~----~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~  235 (243)
T 1mv5_A          160 ILMLDEATASLDSESESMVQKALDSLM----KGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYV  235 (243)
T ss_dssp             EEEEECCSCSSCSSSCCHHHHHHHHHH----TTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHH
T ss_pred             EEEEECCcccCCHHHHHHHHHHHHHhc----CCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhccHHHHHHH
Confidence            999999999999999999999999985    2789999999999887799999999999999999999988777788887


Q ss_pred             HHh
Q 020527          318 KRQ  320 (325)
Q Consensus       318 ~~~  320 (325)
                      ..+
T Consensus       236 ~~~  238 (243)
T 1mv5_A          236 SEQ  238 (243)
T ss_dssp             HCC
T ss_pred             Hhh
Confidence            654

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=100.00  E-value=1e-58  Score=439.49  Aligned_cols=221  Identities=30%  Similarity=0.451  Sum_probs=187.5

Q ss_pred             ccEEEEEEEEECCCCC-CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHH---
Q 020527           78 GHVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW---  153 (325)
Q Consensus        78 ~~i~~~~v~~~y~~~~-~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~---  153 (325)
                      .+|+++||+|+|+++. ..++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..++..+   
T Consensus        23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~  102 (366)
T 3tui_C           23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK  102 (366)
T ss_dssp             CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred             ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence            3699999999996431 236999999999999999999999999999999999999999999999999998877543   


Q ss_pred             HhcceEEEccCCcCc-cccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 020527          154 LREKIGFVGQEPQLL-QMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA  227 (325)
Q Consensus       154 ~r~~i~~v~Q~~~l~-~~tv~enl~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~  227 (325)
                      +|++||||||++.+| ..||+||+.++.. .....    +++.++++.+++.+..++.         +.+|||||||||+
T Consensus       103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~---------~~~LSGGqkQRVa  173 (366)
T 3tui_C          103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSY---------PSNLSGGQKQRVA  173 (366)
T ss_dssp             HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCC---------TTTSCHHHHHHHH
T ss_pred             HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCC---------hhhCCHHHHHHHH
Confidence            478899999999988 5799999987521 11122    2234444544444433333         3689999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHH
Q 020527          228 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL  306 (325)
Q Consensus       228 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l  306 (325)
                      |||||+.+|++||||||||+||+.++..++++|++++++  .|+|||+||||++.+.. ||||++|++|++++.|+++++
T Consensus       174 IArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~--~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev  251 (366)
T 3tui_C          174 IARALASNPKVLLCDQATSALDPATTRSILELLKDINRR--LGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV  251 (366)
T ss_dssp             HHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH--SCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHH
T ss_pred             HHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHh--CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            999999999999999999999999999999999999753  48999999999999865 999999999999999999999


Q ss_pred             hhc
Q 020527          307 LHK  309 (325)
Q Consensus       307 ~~~  309 (325)
                      +++
T Consensus       252 ~~~  254 (366)
T 3tui_C          252 FSH  254 (366)
T ss_dssp             HSS
T ss_pred             HhC
Confidence            875

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=100.00  E-value=2.8e-58  Score=423.11  Aligned_cols=223  Identities=28%  Similarity=0.469  Sum_probs=183.7

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCC--CCHHHHhc
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD--LDIRWLRE  156 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~--~~~~~~r~  156 (325)
                      .|+++||+|+|+++  ..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..  .+...+|+
T Consensus         7 ~l~i~~ls~~y~~~--~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~   84 (275)
T 3gfo_A            7 ILKVEELNYNYSDG--THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE   84 (275)
T ss_dssp             EEEEEEEEEECTTS--CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred             EEEEEEEEEEECCC--CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence            49999999999753  359999999999999999999999999999999999999999999999999852  22345678


Q ss_pred             ceEEEccCC--cCccccHHHHHhcCCC-CCCCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 020527          157 KIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA  229 (325)
Q Consensus       157 ~i~~v~Q~~--~l~~~tv~enl~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA  229 (325)
                      +||||||+|  .+|..||+||+.++.. ......    ++.++++.+++.++.+         ....+|||||||||+||
T Consensus        85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~---------~~~~~LSgGqkQRv~iA  155 (275)
T 3gfo_A           85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKD---------KPTHCLSFGQKKRVAIA  155 (275)
T ss_dssp             SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTT---------SBGGGSCHHHHHHHHHH
T ss_pred             cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc---------CCcccCCHHHHHHHHHH
Confidence            999999997  4568899999987531 112222    2333444444333222         22367999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527          230 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH  308 (325)
Q Consensus       230 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~  308 (325)
                      |||+.+|++|||||||++||+.++..++++|++++++  .|+|||+||||++.+.. ||||++|++|++++.|+++++++
T Consensus       156 raL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~--~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~  233 (275)
T 3gfo_A          156 GVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKE--LGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA  233 (275)
T ss_dssp             HHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHH--HCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred             HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhh--CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence            9999999999999999999999999999999999632  38899999999999865 99999999999999999999987


Q ss_pred             cCHHHH
Q 020527          309 KGRLYA  314 (325)
Q Consensus       309 ~~~~~~  314 (325)
                      ....+.
T Consensus       234 ~~~~~~  239 (275)
T 3gfo_A          234 EKEVIR  239 (275)
T ss_dssp             HHHHHH
T ss_pred             CHHHHH
Confidence            654443

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=100.00  E-value=1.8e-57  Score=416.12  Aligned_cols=217  Identities=27%  Similarity=0.420  Sum_probs=186.0

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .|+++||+++|++   .++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+++.+
T Consensus        11 ~l~~~~l~~~~~~---~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i   87 (266)
T 4g1u_C           11 LLEASHLHYHVQQ---QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR   87 (266)
T ss_dssp             EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred             eEEEEeEEEEeCC---eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence            5999999999975   3699999999999999999999999999999999999999999999999999888887788889


Q ss_pred             EEEccCCcCc-cccHHHHHhcCCCCC---CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 020527          159 GFVGQEPQLL-QMDIKSNIMYGCPKD---VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR  234 (325)
Q Consensus       159 ~~v~Q~~~l~-~~tv~enl~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~  234 (325)
                      +|+||++.++ ..||+||+.++....   ...+.+.++++.+++.++.         .....+|||||||||+|||||++
T Consensus        88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---------~~~~~~LSgGq~QRv~iAraL~~  158 (266)
T 4g1u_C           88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALA---------QRDYRVLSGGEQQRVQLARVLAQ  158 (266)
T ss_dssp             EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTT---------TSBGGGCCHHHHHHHHHHHHHHH
T ss_pred             EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHh---------cCCcccCCHHHHHHHHHHHHHhc
Confidence            9999999874 789999998864221   1123334444444432222         22235799999999999999999


Q ss_pred             ------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHh
Q 020527          235 ------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELL  307 (325)
Q Consensus       235 ------~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~  307 (325)
                            +|++|||||||+|||+.++..+.+.|++++++  .++|||+||||++.+. .||||++|++|++++.|++++++
T Consensus       159 ~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~--~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~  236 (266)
T 4g1u_C          159 LWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQ--EPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL  236 (266)
T ss_dssp             TCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHH--SSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred             ccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHc--CCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence                  99999999999999999999999999999753  3689999999999986 59999999999999999999987


Q ss_pred             hc
Q 020527          308 HK  309 (325)
Q Consensus       308 ~~  309 (325)
                      +.
T Consensus       237 ~~  238 (266)
T 4g1u_C          237 NA  238 (266)
T ss_dssp             CH
T ss_pred             Cc
Confidence            64

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=100.00  E-value=2.5e-57  Score=429.63  Aligned_cols=218  Identities=28%  Similarity=0.491  Sum_probs=184.5

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCC--CHHHHhc
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL--DIRWLRE  156 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~--~~~~~r~  156 (325)
                      .|+++||+|+|++   .++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...  .....++
T Consensus         4 ~l~i~~ls~~y~~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r   80 (359)
T 3fvq_A            4 ALHIGHLSKSFQN---TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER   80 (359)
T ss_dssp             CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred             EEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence            5999999999975   3699999999999999999999999999999999999999999999999998321  1223467


Q ss_pred             ceEEEccCCcCc-cccHHHHHhcCCCCC-CC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527          157 KIGFVGQEPQLL-QMDIKSNIMYGCPKD-VK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR  230 (325)
Q Consensus       157 ~i~~v~Q~~~l~-~~tv~enl~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr  230 (325)
                      +||||||++.+| .+||+||+.|+.... ..    .+++.++++.+++.++.++.+         .+|||||||||+|||
T Consensus        81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~---------~~LSGGq~QRValAr  151 (359)
T 3fvq_A           81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYP---------HELSGGQQQRAALAR  151 (359)
T ss_dssp             CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCG---------GGSCHHHHHHHHHHH
T ss_pred             CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCCh---------hhCCHHHHHHHHHHH
Confidence            899999999998 589999999975321 11    223445555555554444433         679999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhhc
Q 020527          231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK  309 (325)
Q Consensus       231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~  309 (325)
                      ||+.+|++||||||||+||+..+..+++.+.++.++  .|+|+|+||||++++. .||||++|++|++++.|+++++++.
T Consensus       152 AL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~--~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~  229 (359)
T 3fvq_A          152 ALAPDPELILLDEPFSALDEQLRRQIREDMIAALRA--NGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ  229 (359)
T ss_dssp             HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH--TTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence            999999999999999999999999999988877653  4899999999999986 4999999999999999999999875


Q ss_pred             C
Q 020527          310 G  310 (325)
Q Consensus       310 ~  310 (325)
                      .
T Consensus       230 p  230 (359)
T 3fvq_A          230 P  230 (359)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=100.00  E-value=5e-58  Score=412.82  Aligned_cols=221  Identities=32%  Similarity=0.467  Sum_probs=177.1

Q ss_pred             EEEEEEEEECCCCC-CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHH----
Q 020527           80 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL----  154 (325)
Q Consensus        80 i~~~~v~~~y~~~~-~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~----  154 (325)
                      |+++||+|+|+++. ..++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+    
T Consensus         2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~   81 (235)
T 3tif_A            2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR   81 (235)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred             EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence            78999999997431 1359999999999999999999999999999999999999999999999999988775542    


Q ss_pred             hcceEEEccCCcCcc-ccHHHHHhcCCC----CCCCHHHHHHHHHHcCHHHHHHhCCCCcc-cccCCCCCChHHHHHHHH
Q 020527          155 REKIGFVGQEPQLLQ-MDIKSNIMYGCP----KDVKNEDIEWAAKQAYVHEFILSLPCGYE-TLVDDDLLSGGQKQRIAI  228 (325)
Q Consensus       155 r~~i~~v~Q~~~l~~-~tv~enl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~LSgGq~QRv~i  228 (325)
                      +++|||+||++.+|+ .||+||+.++..    .....+...     ..+.+.++.+..... ....+.+|||||||||+|
T Consensus        82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~i  156 (235)
T 3tif_A           82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERR-----KRALECLKMAELEERFANHKPNQLSGGQQQRVAI  156 (235)
T ss_dssp             HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHH-----HHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHH
T ss_pred             hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHH-----HHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHH
Confidence            456999999999885 699999987421    011221111     112233333332211 122346899999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHh
Q 020527          229 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL  307 (325)
Q Consensus       229 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~  307 (325)
                      ||||+.+|++|||||||++||+.++..+.+.+++++++  .|+|||+||||++.+..||||++|++|++++.++++++.
T Consensus       157 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~--~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~  233 (235)
T 3tif_A          157 ARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEE--DGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGFD  233 (235)
T ss_dssp             HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC---
T ss_pred             HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH--cCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhhhc
Confidence            99999999999999999999999999999999999653  388999999999977679999999999999999877653

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=100.00  E-value=2.7e-57  Score=432.20  Aligned_cols=217  Identities=29%  Similarity=0.468  Sum_probs=184.8

Q ss_pred             cccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhc
Q 020527           77 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE  156 (325)
Q Consensus        77 ~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~  156 (325)
                      |..|+++||+|+|++   ..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+..  ++
T Consensus         1 M~~l~~~~l~~~yg~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r   75 (381)
T 3rlf_A            1 MASVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ER   75 (381)
T ss_dssp             -CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GS
T ss_pred             CCEEEEEeEEEEECC---EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HC
Confidence            345999999999975   3699999999999999999999999999999999999999999999999999876654  46


Q ss_pred             ceEEEccCCcCc-cccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527          157 KIGFVGQEPQLL-QMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR  230 (325)
Q Consensus       157 ~i~~v~Q~~~l~-~~tv~enl~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr  230 (325)
                      .||||||++.+| .+||+||+.|+.. .....    +++.++++.+++.++.++.         +.+|||||||||+|||
T Consensus        76 ~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~---------p~~LSGGqrQRVaiAr  146 (381)
T 3rlf_A           76 GVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRK---------PKALSGGQRQRVAIGR  146 (381)
T ss_dssp             CEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCC---------GGGSCHHHHHHHHHHH
T ss_pred             CEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCC---------hhHCCHHHHHHHHHHH
Confidence            799999999998 5799999988632 11122    2233444444444333333         3679999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhhc
Q 020527          231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK  309 (325)
Q Consensus       231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~  309 (325)
                      ||+.+|++||||||||+||+..+.++++.|++++++  .|+|+|+||||++++. .||||++|++|++++.|+++++++.
T Consensus       147 AL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~--~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~  224 (381)
T 3rlf_A          147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR--LGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY  224 (381)
T ss_dssp             HHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred             HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhC
Confidence            999999999999999999999999999999999753  4899999999999886 5999999999999999999999875

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=100.00  E-value=1.1e-56  Score=410.16  Aligned_cols=216  Identities=34%  Similarity=0.490  Sum_probs=180.7

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCC--CCCHHHHhc
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT--DLDIRWLRE  156 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~--~~~~~~~r~  156 (325)
                      .|+++||+++|++   .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.  ......+++
T Consensus        24 ~l~i~~l~~~y~~---~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~  100 (263)
T 2olj_A           24 MIDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE  100 (263)
T ss_dssp             SEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred             eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence            5999999999964   36999999999999999999999999999999999999999999999999985  223445677


Q ss_pred             ceEEEccCCcCcc-ccHHHHHhcCC--CCCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 020527          157 KIGFVGQEPQLLQ-MDIKSNIMYGC--PKDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA  229 (325)
Q Consensus       157 ~i~~v~Q~~~l~~-~tv~enl~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA  229 (325)
                      +|+||||++.+|+ .||+||+.++.  ......    +++.++++.+++.+..+         ....+|||||||||+||
T Consensus       101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~---------~~~~~LSgGqkQRv~lA  171 (263)
T 2olj_A          101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAH---------AYPDSLSGGQAQRVAIA  171 (263)
T ss_dssp             HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTT---------SCGGGSCHHHHHHHHHH
T ss_pred             cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc---------CChhhCCHHHHHHHHHH
Confidence            8999999998884 69999998742  111121    12233333333332222         22367999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527          230 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH  308 (325)
Q Consensus       230 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~  308 (325)
                      |||+.+|++|||||||++||+.++..+.+.|+++++   +|+|||++|||++.+.. ||++++|++|++++.|+++++++
T Consensus       172 raL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~---~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  248 (263)
T 2olj_A          172 RALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN---EGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD  248 (263)
T ss_dssp             HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            999999999999999999999999999999999965   37899999999999864 99999999999999999999986


Q ss_pred             c
Q 020527          309 K  309 (325)
Q Consensus       309 ~  309 (325)
                      .
T Consensus       249 ~  249 (263)
T 2olj_A          249 R  249 (263)
T ss_dssp             S
T ss_pred             C
Confidence            5

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=3.1e-56  Score=402.33  Aligned_cols=216  Identities=22%  Similarity=0.394  Sum_probs=180.6

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHH-hcc
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REK  157 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~-r~~  157 (325)
                      +|+++||+++|++   .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+ +++
T Consensus         6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~   82 (240)
T 1ji0_A            6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG   82 (240)
T ss_dssp             EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred             eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence            4899999999975   369999999999999999999999999999999999999999999999999977665543 556


Q ss_pred             eEEEccCCcCcc-ccHHHHHhcCCCCCCCH----HHHHHHHHHcC-HHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 020527          158 IGFVGQEPQLLQ-MDIKSNIMYGCPKDVKN----EDIEWAAKQAY-VHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA  231 (325)
Q Consensus       158 i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra  231 (325)
                      |+|+||++.+|+ .||+||+.++.......    +.+.+.++..+ +.+..++         ...+|||||||||+||||
T Consensus        83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~---------~~~~LSgGq~qrv~lAra  153 (240)
T 1ji0_A           83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQ---------LGGTLSGGEQQMLAIGRA  153 (240)
T ss_dssp             EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTS---------BSSSSCHHHHHHHHHHHH
T ss_pred             EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcC---------ChhhCCHHHHHHHHHHHH
Confidence            999999998885 69999998863111111    12233333332 3322221         236799999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhhc
Q 020527          232 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK  309 (325)
Q Consensus       232 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~  309 (325)
                      |+.+|++|||||||++||+.++..+.+.|+++++   .|+|||++|||++.+. .||++++|++|++++.|+++++++.
T Consensus       154 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~---~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  229 (240)
T 1ji0_A          154 LMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ---EGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN  229 (240)
T ss_dssp             HTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH---TTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred             HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence            9999999999999999999999999999999864   3789999999998875 5999999999999999999998764

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=100.00  E-value=4.5e-56  Score=406.18  Aligned_cols=216  Identities=31%  Similarity=0.465  Sum_probs=182.6

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCC----------
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD----------  148 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~----------  148 (325)
                      .|+++||+++|++   .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..          
T Consensus         6 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~   82 (262)
T 1b0u_A            6 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV   82 (262)
T ss_dssp             CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred             eEEEeeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence            4999999999964   369999999999999999999999999999999999999999999999999851          


Q ss_pred             CCH---HHHhcceEEEccCCcCc-cccHHHHHhcCC--CCCCC----HHHHHHHHHHcCHHHH-HHhCCCCcccccCCCC
Q 020527          149 LDI---RWLREKIGFVGQEPQLL-QMDIKSNIMYGC--PKDVK----NEDIEWAAKQAYVHEF-ILSLPCGYETLVDDDL  217 (325)
Q Consensus       149 ~~~---~~~r~~i~~v~Q~~~l~-~~tv~enl~~~~--~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  217 (325)
                      .+.   ..++++||||||++.+| ..||+||+.++.  .....    .+.+.++++.+++.+. .++.+         .+
T Consensus        83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~---------~~  153 (262)
T 1b0u_A           83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP---------VH  153 (262)
T ss_dssp             SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG---------GG
T ss_pred             cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCc---------cc
Confidence            332   24567899999999888 479999998742  11111    1233445555555554 44333         67


Q ss_pred             CChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCE
Q 020527          218 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGR  296 (325)
Q Consensus       218 LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~  296 (325)
                      |||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++++   +|+|||+||||++.+. .||+|++|++|+
T Consensus       154 LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~---~g~tvi~vtHd~~~~~~~~d~v~~l~~G~  230 (262)
T 1b0u_A          154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE---EGKTMVVVTHEMGFARHVSSHVIFLHQGK  230 (262)
T ss_dssp             SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH---TTCCEEEECSCHHHHHHHCSEEEEEETTE
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence            999999999999999999999999999999999999999999999965   3789999999999986 499999999999


Q ss_pred             EEEEcChHHHhhc
Q 020527          297 IIEVGNHAELLHK  309 (325)
Q Consensus       297 i~~~g~~~~l~~~  309 (325)
                      +++.|+++++++.
T Consensus       231 i~~~g~~~~~~~~  243 (262)
T 1b0u_A          231 IEEEGDPEQVFGN  243 (262)
T ss_dssp             EEEEECHHHHHHS
T ss_pred             EEEeCCHHHHHhC
Confidence            9999999999864

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=100.00  E-value=4.2e-56  Score=422.05  Aligned_cols=217  Identities=26%  Similarity=0.471  Sum_probs=185.1

Q ss_pred             ccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 020527           78 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK  157 (325)
Q Consensus        78 ~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~  157 (325)
                      ..|+++||+|+|++   ..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+..  +++
T Consensus         2 ~~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~   76 (359)
T 2yyz_A            2 PSIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YRE   76 (359)
T ss_dssp             CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTT
T ss_pred             cEEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCc
Confidence            35899999999964   3699999999999999999999999999999999999999999999999999766543  578


Q ss_pred             eEEEccCCcCc-cccHHHHHhcCCCCCC-C----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 020527          158 IGFVGQEPQLL-QMDIKSNIMYGCPKDV-K----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA  231 (325)
Q Consensus       158 i~~v~Q~~~l~-~~tv~enl~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra  231 (325)
                      ||||||++.+| .+||+||+.|+..... .    .+++.++++.+++.++.++.         +.+|||||||||+||||
T Consensus        77 ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~---------~~~LSgGq~QRvalArA  147 (359)
T 2yyz_A           77 VGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRK---------PTQLSGGQQQRVALARA  147 (359)
T ss_dssp             EEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSC---------GGGSCHHHHHHHHHHHH
T ss_pred             EEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCC---------hhhCCHHHHHHHHHHHH
Confidence            99999999998 5799999998743211 1    12344455555544443333         36799999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhhcC
Q 020527          232 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHKG  310 (325)
Q Consensus       232 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~~  310 (325)
                      |+.+|++||||||||+||+.++..+.+.|+++.++  .|+|+|+||||++++. .||||++|++|++++.|++++++++.
T Consensus       148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p  225 (359)
T 2yyz_A          148 LVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQE--LGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSP  225 (359)
T ss_dssp             HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred             HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence            99999999999999999999999999999998653  3789999999999885 59999999999999999999998753

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=3.4e-56  Score=405.53  Aligned_cols=217  Identities=26%  Similarity=0.395  Sum_probs=182.2

Q ss_pred             CcccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHh
Q 020527           76 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR  155 (325)
Q Consensus        76 ~~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r  155 (325)
                      .|+.|+++||+++|++   .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ....++
T Consensus        12 ~~~~l~i~~l~~~y~~---~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~   87 (256)
T 1vpl_A           12 HMGAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVR   87 (256)
T ss_dssp             --CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHH
T ss_pred             cCCeEEEEEEEEEECC---EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHh
Confidence            4667999999999964   369999999999999999999999999999999999999999999999999865 345667


Q ss_pred             cceEEEccCCcCcc-ccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 020527          156 EKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA  229 (325)
Q Consensus       156 ~~i~~v~Q~~~l~~-~tv~enl~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA  229 (325)
                      ++|||+||++.+|+ .||+||+.++.. .....    +.+.++++.+++.+..++         ...+|||||||||+||
T Consensus        88 ~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~---------~~~~LSgGq~qRv~lA  158 (256)
T 1vpl_A           88 KLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKD---------RVSTYSKGMVRKLLIA  158 (256)
T ss_dssp             TTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGS---------BGGGCCHHHHHHHHHH
T ss_pred             hcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcC---------ChhhCCHHHHHHHHHH
Confidence            88999999998874 699999987421 01111    223344444444333322         2357999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527          230 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH  308 (325)
Q Consensus       230 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~  308 (325)
                      |||+.+|++|||||||++||+.++..+.+.|+++++   .|+|||++|||++.+.. ||++++|++|++++.|+++++.+
T Consensus       159 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~---~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  235 (256)
T 1vpl_A          159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ---EGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE  235 (256)
T ss_dssp             HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred             HHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh---CCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence            999999999999999999999999999999999964   37899999999999876 99999999999999999999864

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=100.00  E-value=5.7e-56  Score=425.42  Aligned_cols=226  Identities=25%  Similarity=0.425  Sum_probs=203.3

Q ss_pred             CcccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHh
Q 020527           76 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR  155 (325)
Q Consensus        76 ~~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r  155 (325)
                      ....|+++||+|+|+.. ...+|+|+||+|++||+++|+||||||||||||+|+|+++ ++|+|.++|+++...+...+|
T Consensus        16 ~~~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~r   93 (390)
T 3gd7_A           16 SGGQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWR   93 (390)
T ss_dssp             SSCCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHH
T ss_pred             CCCeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHh
Confidence            34569999999999532 2469999999999999999999999999999999999998 999999999999988888888


Q ss_pred             cceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHc
Q 020527          156 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAIL  233 (325)
Q Consensus       156 ~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~  233 (325)
                      +.||||||++.+|++||+||+.+..  ....+++.++++.+++.+++++.|..+++....  .+|||||||||+|||||+
T Consensus        94 r~ig~v~Q~~~lf~~tv~enl~~~~--~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~  171 (390)
T 3gd7_A           94 KAFGVIPQKVFIFSGTFRKNLDPNA--AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVL  171 (390)
T ss_dssp             HTEEEESCCCCCCSEEHHHHHCTTC--CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEcCCcccCccCHHHHhhhcc--ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHh
Confidence            9999999999999999999998542  345677888999999999999999877776653  469999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhc
Q 020527          234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK  309 (325)
Q Consensus       234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~  309 (325)
                      .+|++||||||||+||+.++.++++.|+++.    .++|+|++|||++.+..||||++|++|+|++.|+++++++.
T Consensus       172 ~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~----~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~  243 (390)
T 3gd7_A          172 SKAKILLLDEPSAHLDPVTYQIIRRTLKQAF----ADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHY  243 (390)
T ss_dssp             TTCCEEEEESHHHHSCHHHHHHHHHHHHTTT----TTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHC
T ss_pred             cCCCEEEEeCCccCCCHHHHHHHHHHHHHHh----CCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence            9999999999999999999999999998763    37899999999987777999999999999999999999875

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=100.00  E-value=3.5e-56  Score=405.93  Aligned_cols=216  Identities=25%  Similarity=0.375  Sum_probs=179.0

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHH-HHhcc
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR-WLREK  157 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~-~~r~~  157 (325)
                      .|+++||+++|++   .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. .++++
T Consensus         7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~   83 (257)
T 1g6h_A            7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG   83 (257)
T ss_dssp             EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred             EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence            5999999999964   3699999999999999999999999999999999999999999999999998765543 35678


Q ss_pred             eEEEccCCcCc-cccHHHHHhcCCCC---C-----------CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHH
Q 020527          158 IGFVGQEPQLL-QMDIKSNIMYGCPK---D-----------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ  222 (325)
Q Consensus       158 i~~v~Q~~~l~-~~tv~enl~~~~~~---~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq  222 (325)
                      |+|+||++.+| ..||+||+.++...   .           .....     ....+.++++.+...........+|||||
T Consensus        84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGq  158 (257)
T 1g6h_A           84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEE-----MVEKAFKILEFLKLSHLYDRKAGELSGGQ  158 (257)
T ss_dssp             EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHH-----HHHHHHHHHHHTTCGGGTTSBGGGSCHHH
T ss_pred             EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHH-----HHHHHHHHHHHcCCchhhCCCchhCCHHH
Confidence            99999999888 58999999886321   1           11111     01122344444432221222236799999


Q ss_pred             HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEc
Q 020527          223 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVG  301 (325)
Q Consensus       223 ~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g  301 (325)
                      ||||+|||||+.+|++|||||||++||+.++..+.+.|+++++   +|+|||++|||++.+. .||++++|++|++++.|
T Consensus       159 kQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~---~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g  235 (257)
T 1g6h_A          159 MKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA---KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG  235 (257)
T ss_dssp             HHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEE
T ss_pred             HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH---CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEe
Confidence            9999999999999999999999999999999999999999964   3889999999999886 59999999999999999


Q ss_pred             ChHH
Q 020527          302 NHAE  305 (325)
Q Consensus       302 ~~~~  305 (325)
                      ++++
T Consensus       236 ~~~~  239 (257)
T 1g6h_A          236 RGEE  239 (257)
T ss_dssp             ESHH
T ss_pred             CHHH
Confidence            9998

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=100.00  E-value=1.3e-55  Score=397.64  Aligned_cols=228  Identities=27%  Similarity=0.471  Sum_probs=190.8

Q ss_pred             ccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 020527           78 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK  157 (325)
Q Consensus        78 ~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~  157 (325)
                      ..|+++||+++|++. +.++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|             +
T Consensus         2 ~~l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~   67 (237)
T 2cbz_A            2 NSITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------S   67 (237)
T ss_dssp             CCEEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------C
T ss_pred             CeEEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------E
Confidence            358999999999732 24699999999999999999999999999999999999999999999998             3


Q ss_pred             eEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCC
Q 020527          158 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRD  235 (325)
Q Consensus       158 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~  235 (325)
                      |+|+||++.++..||+||+.++...  ..+...++.+..++.+.+...+.++.+...  ..+|||||||||+|||||+.+
T Consensus        68 i~~v~Q~~~~~~~tv~enl~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~  145 (237)
T 2cbz_A           68 VAYVPQQAWIQNDSLRENILFGCQL--EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSN  145 (237)
T ss_dssp             EEEECSSCCCCSEEHHHHHHTTSCC--CTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred             EEEEcCCCcCCCcCHHHHhhCcccc--CHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence            9999999988889999999986422  122344555666666666655555443332  468999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHH
Q 020527          236 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAK  315 (325)
Q Consensus       236 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~  315 (325)
                      |++|||||||++||+.++..+.+.+.+..+. .+|+|||++|||++.+..||++++|++|++++.|+++++++....|.+
T Consensus       146 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~-~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~  224 (237)
T 2cbz_A          146 ADIYLFDDPLSAVDAHVGKHIFENVIGPKGM-LKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAE  224 (237)
T ss_dssp             CSEEEEESTTTTSCHHHHHHHHHHTTSTTST-TTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHHTSHHHH
T ss_pred             CCEEEEeCcccccCHHHHHHHHHHHHHHHhh-cCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhccHHHHH
Confidence            9999999999999999999999988532111 237899999999998877999999999999999999999888888888


Q ss_pred             HHHHhhh
Q 020527          316 LVKRQTE  322 (325)
Q Consensus       316 ~~~~~~~  322 (325)
                      ++..|..
T Consensus       225 ~~~~~~~  231 (237)
T 2cbz_A          225 FLRTYAS  231 (237)
T ss_dssp             HHHHTCC
T ss_pred             HHHHHHh
Confidence            8877653

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=100.00  E-value=2.9e-56  Score=398.55  Aligned_cols=213  Identities=26%  Similarity=0.406  Sum_probs=174.9

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHH---Hh
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW---LR  155 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~---~r  155 (325)
                      +|+++|++++|++   .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...   ++
T Consensus         4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~   80 (224)
T 2pcj_A            4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR   80 (224)
T ss_dssp             EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred             EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence            4899999999974   36999999999999999999999999999999999999999999999999987665432   33


Q ss_pred             -cceEEEccCCcCc-cccHHHHHhcCCC-CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 020527          156 -EKIGFVGQEPQLL-QMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI  232 (325)
Q Consensus       156 -~~i~~v~Q~~~l~-~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral  232 (325)
                       ++|+|+||++.+| ..||+||+.++.. ........     ...+.++++.+...........+|||||||||+|||||
T Consensus        81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral  155 (224)
T 2pcj_A           81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEA-----KERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARAL  155 (224)
T ss_dssp             HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHH-----HHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHT
T ss_pred             hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHH-----HHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence             6799999999888 4799999987421 11111111     11123344444332222233467999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcC
Q 020527          233 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGN  302 (325)
Q Consensus       233 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~  302 (325)
                      +.+|++|||||||++||+.++..+.+.|+++++   +|+|||++|||++.+..||++++|++|++++.|+
T Consensus       156 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~---~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~  222 (224)
T 2pcj_A          156 ANEPILLFADEPTGNLDSANTKRVMDIFLKINE---GGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT  222 (224)
T ss_dssp             TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred             HcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence            999999999999999999999999999999965   3789999999999886699999999999999875

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=100.00  E-value=4e-56  Score=422.67  Aligned_cols=221  Identities=33%  Similarity=0.483  Sum_probs=182.7

Q ss_pred             ccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 020527           78 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK  157 (325)
Q Consensus        78 ~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~  157 (325)
                      ..|+++|++|+|++   .++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+..  +++
T Consensus         2 ~~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~   76 (362)
T 2it1_A            2 VEIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRN   76 (362)
T ss_dssp             CCEEEEEEEEESSS---SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTT
T ss_pred             cEEEEEeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCc
Confidence            35999999999964   3699999999999999999999999999999999999999999999999999766543  578


Q ss_pred             eEEEccCCcCc-cccHHHHHhcCCC-CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 020527          158 IGFVGQEPQLL-QMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD  235 (325)
Q Consensus       158 i~~v~Q~~~l~-~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~  235 (325)
                      ||||||++.+| .+||+||+.|+.. .........     ..+.++++.+.........+.+|||||||||+|||||+.+
T Consensus        77 ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~-----~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~  151 (362)
T 2it1_A           77 VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEID-----KKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKE  151 (362)
T ss_dssp             EEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHH-----HHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred             EEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcC
Confidence            99999999998 4799999988631 111121111     1122334433332222223468999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhhcC
Q 020527          236 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHKG  310 (325)
Q Consensus       236 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~~  310 (325)
                      |++||||||||+||+.++..+.+.|+++.++  .|+|+|+||||++++. .||||++|++|++++.|++++++++.
T Consensus       152 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p  225 (362)
T 2it1_A          152 PEVLLLDEPLSNLDALLRLEVRAELKRLQKE--LGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKP  225 (362)
T ss_dssp             CSEEEEESGGGGSCHHHHHHHHHHHHHHHHH--HTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred             CCEEEEECccccCCHHHHHHHHHHHHHHHHh--CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence            9999999999999999999999999998653  3789999999999885 59999999999999999999998753

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=100.00  E-value=1e-55  Score=421.17  Aligned_cols=218  Identities=29%  Similarity=0.492  Sum_probs=180.7

Q ss_pred             cccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhc
Q 020527           77 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE  156 (325)
Q Consensus        77 ~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~  156 (325)
                      |..|+++||+|+|++   ..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+..  ++
T Consensus         9 M~~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r   83 (372)
T 1v43_A            9 MVEVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DR   83 (372)
T ss_dssp             CCCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GG
T ss_pred             eeeEEEEEEEEEECC---EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hC
Confidence            446999999999964   3699999999999999999999999999999999999999999999999999766543  56


Q ss_pred             ceEEEccCCcCc-cccHHHHHhcCCCC-CCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527          157 KIGFVGQEPQLL-QMDIKSNIMYGCPK-DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR  230 (325)
Q Consensus       157 ~i~~v~Q~~~l~-~~tv~enl~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr  230 (325)
                      +||||||++.+| .+||+||+.|+... ....    +++.++++.+++.++.++.         +.+|||||||||+|||
T Consensus        84 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~---------~~~LSGGq~QRvalAr  154 (372)
T 1v43_A           84 NISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRY---------PAQLSGGQRQRVAVAR  154 (372)
T ss_dssp             TEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSC---------TTTCCSSCHHHHHHHH
T ss_pred             cEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCC---------hhhCCHHHHHHHHHHH
Confidence            899999999998 58999999997432 1122    2233444444444333333         3689999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhhc
Q 020527          231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK  309 (325)
Q Consensus       231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~  309 (325)
                      ||+.+|++||||||||+||+..+..+.+.|++++++  .|.|+|+||||++++. .||||++|++|++++.|+++++++.
T Consensus       155 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~  232 (372)
T 1v43_A          155 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQK--LKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR  232 (372)
T ss_dssp             HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred             HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence            999999999999999999999999999999998653  3789999999999885 5999999999999999999999875


Q ss_pred             C
Q 020527          310 G  310 (325)
Q Consensus       310 ~  310 (325)
                      .
T Consensus       233 p  233 (372)
T 1v43_A          233 P  233 (372)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=100.00  E-value=4.2e-56  Score=421.87  Aligned_cols=219  Identities=29%  Similarity=0.450  Sum_probs=183.7

Q ss_pred             ccEEEEEEEEECCCCCCCC--ceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCC---HH
Q 020527           78 GHVQFVNISFHYPSRPTVP--ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD---IR  152 (325)
Q Consensus        78 ~~i~~~~v~~~y~~~~~~~--iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~---~~  152 (325)
                      .+|+++||+|+|++   .+  +|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++....   ..
T Consensus         2 ~~l~i~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~   78 (353)
T 1oxx_K            2 VRIIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVP   78 (353)
T ss_dssp             CCEEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSC
T ss_pred             cEEEEEeEEEEECC---EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCC
Confidence            35999999999964   36  999999999999999999999999999999999999999999999999885411   12


Q ss_pred             HHhcceEEEccCCcCcc-ccHHHHHhcCCCC-CCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHH
Q 020527          153 WLREKIGFVGQEPQLLQ-MDIKSNIMYGCPK-DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI  226 (325)
Q Consensus       153 ~~r~~i~~v~Q~~~l~~-~tv~enl~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv  226 (325)
                      ..+++||||||++.+|+ +||+||+.|+... ....    +++.++++.+++.++.++.         +.+|||||||||
T Consensus        79 ~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~---------~~~LSGGq~QRv  149 (353)
T 1oxx_K           79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHF---------PRELSGAQQQRV  149 (353)
T ss_dssp             GGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSC---------GGGSCHHHHHHH
T ss_pred             hhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCC---------hhhCCHHHHHHH
Confidence            34678999999999984 7999999987432 1122    2233444444444333333         367999999999


Q ss_pred             HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHH
Q 020527          227 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAE  305 (325)
Q Consensus       227 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~  305 (325)
                      +|||||+.+|++||||||||+||+.++..+.+.|+++.++  .|+|+|+||||++++. .||||++|++|++++.|++++
T Consensus       150 alAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~  227 (353)
T 1oxx_K          150 ALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSR--LGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPED  227 (353)
T ss_dssp             HHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHH--HCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            9999999999999999999999999999999999998653  3789999999999886 499999999999999999999


Q ss_pred             HhhcC
Q 020527          306 LLHKG  310 (325)
Q Consensus       306 l~~~~  310 (325)
                      ++++.
T Consensus       228 l~~~p  232 (353)
T 1oxx_K          228 LYDNP  232 (353)
T ss_dssp             HHHSC
T ss_pred             HHhCc
Confidence            98753

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=100.00  E-value=1e-55  Score=418.64  Aligned_cols=216  Identities=28%  Similarity=0.491  Sum_probs=183.4

Q ss_pred             cEEEEEEEEEC-CCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 020527           79 HVQFVNISFHY-PSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK  157 (325)
Q Consensus        79 ~i~~~~v~~~y-~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~  157 (325)
                      .|+++||+|+| ++   .++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+.  .+++
T Consensus        14 ~l~~~~l~~~y~g~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~   88 (355)
T 1z47_A           14 TIEFVGVEKIYPGG---ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN   88 (355)
T ss_dssp             EEEEEEEEECCTTS---TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred             eEEEEEEEEEEcCC---CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence            59999999999 54   369999999999999999999999999999999999999999999999999876543  3678


Q ss_pred             eEEEccCCcCcc-ccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 020527          158 IGFVGQEPQLLQ-MDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA  231 (325)
Q Consensus       158 i~~v~Q~~~l~~-~tv~enl~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra  231 (325)
                      ||||||++.+|+ +||+||+.|+.. .....    +++.++++.+++.++.++.         +.+|||||||||+||||
T Consensus        89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~---------~~~LSGGq~QRvalArA  159 (355)
T 1z47_A           89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRF---------PHELSGGQQQRVALARA  159 (355)
T ss_dssp             EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSC---------GGGSCHHHHHHHHHHHH
T ss_pred             EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCC---------cccCCHHHHHHHHHHHH
Confidence            999999999984 799999988631 11111    2334444444444433333         36799999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhcC
Q 020527          232 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG  310 (325)
Q Consensus       232 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~  310 (325)
                      |+.+|++||||||||+||+.++..+.+.|+++.++  .|+|+|+||||++++.. ||||++|++|++++.|++++++++.
T Consensus       160 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p  237 (355)
T 1z47_A          160 LAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDE--MGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKP  237 (355)
T ss_dssp             HTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHH--HTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred             HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence            99999999999999999999999999999998653  37899999999999864 9999999999999999999998753

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=100.00  E-value=9.7e-55  Score=389.93  Aligned_cols=218  Identities=25%  Similarity=0.426  Sum_probs=185.0

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .|+++||+++|++. ..++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|             +|
T Consensus         6 ~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i   71 (229)
T 2pze_A            6 EVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI   71 (229)
T ss_dssp             EEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CE
T ss_pred             eEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EE
Confidence            59999999999632 24699999999999999999999999999999999999999999999998             49


Q ss_pred             EEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCC
Q 020527          159 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDP  236 (325)
Q Consensus       159 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p  236 (325)
                      +|+||++.+|+.||+||+.++..  ..........+..++.+.++.++.+.++..+  ..+|||||||||+|||||+.+|
T Consensus        72 ~~v~q~~~~~~~tv~enl~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p  149 (229)
T 2pze_A           72 SFCSQFSWIMPGTIKENIIFGVS--YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA  149 (229)
T ss_dssp             EEECSSCCCCSBCHHHHHHTTSC--CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCC
T ss_pred             EEEecCCcccCCCHHHHhhccCC--cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCC
Confidence            99999999988899999998732  2233444566667788888887766555443  3689999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHH-HHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHH
Q 020527          237 AILLLDEATSALDSESEHYVKGVL-HALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAK  315 (325)
Q Consensus       237 ~llllDEPts~LD~~~~~~i~~~l-~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~  315 (325)
                      ++|||||||++||+.++..+.+.+ .++.    .++|||++|||++.+..||++++|++|++++.|+++++......|.+
T Consensus       150 ~lllLDEPts~LD~~~~~~i~~~l~~~~~----~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~  225 (229)
T 2pze_A          150 DLYLLDSPFGYLDVLTEKEIFESCVCKLM----ANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSS  225 (229)
T ss_dssp             SEEEEESTTTTSCHHHHHHHHHHCCCCCT----TTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC--CHHH
T ss_pred             CEEEEECcccCCCHHHHHHHHHHHHHHhh----CCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHH
Confidence            999999999999999999998863 4442    37899999999998877999999999999999999999876444544


Q ss_pred             H
Q 020527          316 L  316 (325)
Q Consensus       316 ~  316 (325)
                      +
T Consensus       226 ~  226 (229)
T 2pze_A          226 K  226 (229)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=100.00  E-value=9.8e-56  Score=421.85  Aligned_cols=217  Identities=29%  Similarity=0.438  Sum_probs=183.4

Q ss_pred             ccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCC------CCH
Q 020527           78 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD------LDI  151 (325)
Q Consensus        78 ~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~------~~~  151 (325)
                      ..|+++||+|+|++   .++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++..      .+.
T Consensus         2 ~~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~   78 (372)
T 1g29_1            2 AGVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP   78 (372)
T ss_dssp             EEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG
T ss_pred             CEEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH
Confidence            35899999999964   369999999999999999999999999999999999999999999999999864      333


Q ss_pred             HHHhcceEEEccCCcCc-cccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527          152 RWLREKIGFVGQEPQLL-QMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR  225 (325)
Q Consensus       152 ~~~r~~i~~v~Q~~~l~-~~tv~enl~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR  225 (325)
                        .+++||||||++.+| .+||+||+.|+.. .....    +++.++++.+++.++.++.         +.+||||||||
T Consensus        79 --~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~---------~~~LSGGq~QR  147 (372)
T 1g29_1           79 --KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRK---------PRELSGGQRQR  147 (372)
T ss_dssp             --GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCC---------GGGSCHHHHHH
T ss_pred             --hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCC---------cccCCHHHHHH
Confidence              257899999999998 5899999988631 11112    2334445555544433333         36799999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChH
Q 020527          226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA  304 (325)
Q Consensus       226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~  304 (325)
                      |+|||||+.+|++||||||||+||+.++..+.+.|+++.++  .|+|+|+||||++++. .||||++|++|++++.|+++
T Consensus       148 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~  225 (372)
T 1g29_1          148 VALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQ--LGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPD  225 (372)
T ss_dssp             HHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHH
T ss_pred             HHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHH
Confidence            99999999999999999999999999999999999998653  3789999999999986 59999999999999999999


Q ss_pred             HHhhcC
Q 020527          305 ELLHKG  310 (325)
Q Consensus       305 ~l~~~~  310 (325)
                      ++++..
T Consensus       226 ~l~~~p  231 (372)
T 1g29_1          226 EVYDKP  231 (372)
T ss_dssp             HHHHSC
T ss_pred             HHHhCc
Confidence            998753

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=100.00  E-value=2.5e-55  Score=415.38  Aligned_cols=214  Identities=33%  Similarity=0.544  Sum_probs=183.1

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      |+++||+|+|++   . +|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+.  .+++||
T Consensus         2 l~~~~l~~~y~~---~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig   75 (348)
T 3d31_A            2 IEIESLSRKWKN---F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIA   75 (348)
T ss_dssp             EEEEEEEEECSS---C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCE
T ss_pred             EEEEEEEEEECC---E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEE
Confidence            789999999963   4 9999999999999999999999999999999999999999999999999876543  367899


Q ss_pred             EEccCCcCcc-ccHHHHHhcCCC--CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 020527          160 FVGQEPQLLQ-MDIKSNIMYGCP--KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP  236 (325)
Q Consensus       160 ~v~Q~~~l~~-~tv~enl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p  236 (325)
                      ||||++.+|+ +||+||+.|+..  .....+++.++++.+++.++.++.         +.+|||||||||+|||||+.+|
T Consensus        76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~---------~~~LSgGq~QRvalAraL~~~P  146 (348)
T 3d31_A           76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRN---------PLTLSGGEQQRVALARALVTNP  146 (348)
T ss_dssp             EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSC---------GGGSCHHHHHHHHHHHHTTSCC
T ss_pred             EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCC---------hhhCCHHHHHHHHHHHHHHcCC
Confidence            9999999984 799999988631  011124445555555544433333         3679999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhhcC
Q 020527          237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHKG  310 (325)
Q Consensus       237 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~~  310 (325)
                      ++||||||||+||+.++..+.+.|++++++  .|+|+|+||||++++. .||||++|++|++++.|+++++++..
T Consensus       147 ~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~--~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p  219 (348)
T 3d31_A          147 KILLLDEPLSALDPRTQENAREMLSVLHKK--NKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP  219 (348)
T ss_dssp             SEEEEESSSTTSCHHHHHHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred             CEEEEECccccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence            999999999999999999999999999753  4889999999999885 59999999999999999999998653

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=100.00  E-value=4.9e-55  Score=400.20  Aligned_cols=216  Identities=30%  Similarity=0.488  Sum_probs=184.1

Q ss_pred             cEEEEEEEEECCCCCC--CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhc
Q 020527           79 HVQFVNISFHYPSRPT--VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE  156 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~--~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~  156 (325)
                      +|+++||+++|+....  +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...   .+++
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~   78 (266)
T 2yz2_A            2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRR   78 (266)
T ss_dssp             CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGG
T ss_pred             EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhh
Confidence            4899999999962111  3599999999999999999999999999999999999999999999999987532   5678


Q ss_pred             ceEEEccCC--cCccccHHHHHhcCCCC----CCCHHHHHHHHHHcCHH--HHHHhCCCCcccccCCCCCChHHHHHHHH
Q 020527          157 KIGFVGQEP--QLLQMDIKSNIMYGCPK----DVKNEDIEWAAKQAYVH--EFILSLPCGYETLVDDDLLSGGQKQRIAI  228 (325)
Q Consensus       157 ~i~~v~Q~~--~l~~~tv~enl~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~LSgGq~QRv~i  228 (325)
                      +|||+||++  .++..||+||+.++...    ....+++.++++.+++.  ++.++.+         .+|||||||||+|
T Consensus        79 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---------~~LSgGq~qRv~l  149 (266)
T 2yz2_A           79 NIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP---------FFLSGGEKRRVAI  149 (266)
T ss_dssp             GEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCG---------GGSCHHHHHHHHH
T ss_pred             hEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCCh---------hhCCHHHHHHHHH
Confidence            899999996  34578999999886321    12234566677777765  5554443         5799999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHh
Q 020527          229 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL  307 (325)
Q Consensus       229 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~  307 (325)
                      ||||+.+|++|||||||++||+.++..+.+.|+++++   +|+|||++|||++.+.. ||++++|++|++++.|++++++
T Consensus       150 AraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~---~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  226 (266)
T 2yz2_A          150 ASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKT---LGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFL  226 (266)
T ss_dssp             HHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHH
T ss_pred             HHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            9999999999999999999999999999999999965   37899999999999875 9999999999999999999887


Q ss_pred             hc
Q 020527          308 HK  309 (325)
Q Consensus       308 ~~  309 (325)
                      ..
T Consensus       227 ~~  228 (266)
T 2yz2_A          227 EK  228 (266)
T ss_dssp             HH
T ss_pred             cC
Confidence            54

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=100.00  E-value=1.7e-55  Score=405.63  Aligned_cols=219  Identities=25%  Similarity=0.389  Sum_probs=179.2

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCC--CCCHHHHhc
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT--DLDIRWLRE  156 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~--~~~~~~~r~  156 (325)
                      .|+++||+++|++   .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.  ..+...+++
T Consensus        21 ~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~   97 (279)
T 2ihy_A           21 LIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ   97 (279)
T ss_dssp             EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred             eEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence            5999999999974   36999999999999999999999999999999999999999999999999986  556666788


Q ss_pred             ceEEEccCCcC-cc--ccHHHHHhcCCCCC------CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 020527          157 KIGFVGQEPQL-LQ--MDIKSNIMYGCPKD------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA  227 (325)
Q Consensus       157 ~i~~v~Q~~~l-~~--~tv~enl~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~  227 (325)
                      +|+|+||++.+ +.  .||+||+.++....      ...+.      ...+.++++.+...........+|||||||||+
T Consensus        98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~  171 (279)
T 2ihy_A           98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEI------RNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVM  171 (279)
T ss_dssp             TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHH------HHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHH
T ss_pred             cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHH------HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHH
Confidence            99999999865 43  49999998863110      11111      011223344433221112223679999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEE--EEEecCchHHH-hcCEEEEEeCCEEEEEcChH
Q 020527          228 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTV--IVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA  304 (325)
Q Consensus       228 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tv--i~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~  304 (325)
                      |||||+.+|++|||||||++||+.+++.+.++|++++++   |+||  |+||||++.+. .||+|++|++|++++.|+++
T Consensus       172 lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~---g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~  248 (279)
T 2ihy_A          172 IARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS---YPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVE  248 (279)
T ss_dssp             HHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH---CTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHH
T ss_pred             HHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC---CCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence            999999999999999999999999999999999999653   7899  99999999985 59999999999999999999


Q ss_pred             HHhhc
Q 020527          305 ELLHK  309 (325)
Q Consensus       305 ~l~~~  309 (325)
                      ++++.
T Consensus       249 ~~~~~  253 (279)
T 2ihy_A          249 DILTS  253 (279)
T ss_dssp             HHCSH
T ss_pred             HHhcc
Confidence            98754

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=100.00  E-value=2.9e-55  Score=395.80  Aligned_cols=215  Identities=28%  Similarity=0.427  Sum_probs=178.2

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      |+++|++++|++     +|+|+||+|++ |+++|+||||||||||+|+|+|+++|++|+|.++|+++....  ..+++||
T Consensus         2 l~~~~l~~~y~~-----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~   73 (240)
T 2onk_A            2 FLKVRAEKRLGN-----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG   73 (240)
T ss_dssp             CEEEEEEEEETT-----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred             EEEEEEEEEeCC-----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence            789999999952     59999999999 999999999999999999999999999999999999986532  2467899


Q ss_pred             EEccCCcCcc-ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCE
Q 020527          160 FVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI  238 (325)
Q Consensus       160 ~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~l  238 (325)
                      |+||++.+|+ .||+||+.++... .....   .  ...+.++++.+...........+|||||||||+|||||+.+|++
T Consensus        74 ~v~q~~~l~~~ltv~enl~~~~~~-~~~~~---~--~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~l  147 (240)
T 2onk_A           74 FVPQDYALFPHLSVYRNIAYGLRN-VERVE---R--DRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRL  147 (240)
T ss_dssp             CCCSSCCCCTTSCHHHHHHTTCTT-SCHHH---H--HHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSS
T ss_pred             EEcCCCccCCCCcHHHHHHHHHHH-cCCch---H--HHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence            9999998885 6999999986421 11111   0  11233445554432222233467999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhhcC
Q 020527          239 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHKG  310 (325)
Q Consensus       239 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~~  310 (325)
                      |||||||++||+.+++.+.+.|++++++  .|+|||++|||++.+. .||++++|++|++++.|+++++++..
T Consensus       148 llLDEPts~LD~~~~~~~~~~l~~l~~~--~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~  218 (240)
T 2onk_A          148 LLLDEPLSAVDLKTKGVLMEELRFVQRE--FDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK  218 (240)
T ss_dssp             BEEESTTSSCCHHHHHHHHHHHHHHHHH--HTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence            9999999999999999999999998642  3789999999999885 59999999999999999999987653

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=100.00  E-value=1.7e-54  Score=392.72  Aligned_cols=210  Identities=21%  Similarity=0.325  Sum_probs=181.9

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      +|+++||+++       ++|+|+||+|++||+++|+||||||||||+|+|+|+++|+ |+|.++|+++...+...+++++
T Consensus         4 ~l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i   75 (249)
T 2qi9_C            4 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHR   75 (249)
T ss_dssp             EEEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHE
T ss_pred             EEEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceE
Confidence            4899999986       3899999999999999999999999999999999999999 9999999998777777778889


Q ss_pred             EEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC
Q 020527          159 GFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA  237 (325)
Q Consensus       159 ~~v~Q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~  237 (325)
                      +|+||++.+| ..||+||+.++.......+.+.++++.+++.+++++.         ..+|||||||||+|||||+.+|+
T Consensus        76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LSgGq~qrv~lAraL~~~p~  146 (249)
T 2qi9_C           76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRS---------TNQLSGGEWQRVRLAAVVLQITP  146 (249)
T ss_dssp             EEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSB---------GGGCCHHHHHHHHHHHHHHHHCT
T ss_pred             EEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCC---------hhhCCHHHHHHHHHHHHHHcCCC
Confidence            9999999887 4799999998632222244455566665554433322         35799999999999999999999


Q ss_pred             -------EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhh
Q 020527          238 -------ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLH  308 (325)
Q Consensus       238 -------llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~  308 (325)
                             +|||||||++||+.++..+.+.|+++++   +|+|||++|||++.+. .||++++|++|++++.|+++++++
T Consensus       147 ~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~---~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  222 (249)
T 2qi9_C          147 QANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQ---QGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT  222 (249)
T ss_dssp             TTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred             cCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence                   9999999999999999999999999964   3789999999999985 599999999999999999999875

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=100.00  E-value=1.9e-54  Score=392.98  Aligned_cols=216  Identities=24%  Similarity=0.305  Sum_probs=170.0

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcC--CCCCCCeEEECCEeCCCCCHHHH-h
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWL-R  155 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl--~~~~~G~I~i~g~~i~~~~~~~~-r  155 (325)
                      +|+++||+++|++   .++|+|+||+|++||+++|+||||||||||+|+|+|+  ++|++|+|.++|+++...+.... +
T Consensus         3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~   79 (250)
T 2d2e_A            3 QLEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERAR   79 (250)
T ss_dssp             EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHH
T ss_pred             eEEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHh
Confidence            5899999999964   3699999999999999999999999999999999999  89999999999999977665543 4


Q ss_pred             cceEEEccCCcCcc-ccHHHHHhcCCC---C-CCCHHHHHHHHHHcCHHHHHHhCCCC-cccccCCCC-CChHHHHHHHH
Q 020527          156 EKIGFVGQEPQLLQ-MDIKSNIMYGCP---K-DVKNEDIEWAAKQAYVHEFILSLPCG-YETLVDDDL-LSGGQKQRIAI  228 (325)
Q Consensus       156 ~~i~~v~Q~~~l~~-~tv~enl~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-LSgGq~QRv~i  228 (325)
                      ..++|+||++.+|+ .||+||+.++..   . ........     ..+.++++.+... ........+ |||||||||+|
T Consensus        80 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~i  154 (250)
T 2d2e_A           80 KGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFW-----TKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEI  154 (250)
T ss_dssp             TTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHH-----HHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHH
T ss_pred             CcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHH-----HHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHH
Confidence            56999999999885 799999976421   0 01111100     1122333333221 111222356 99999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh--cCEEEEEeCCEEEEEcChHH
Q 020527          229 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVIDDGRIIEVGNHAE  305 (325)
Q Consensus       229 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~--~d~v~~l~~G~i~~~g~~~~  305 (325)
                      ||||+.+|++|||||||++||+.++..+.+.|+++++   .|+|||+||||++.+..  ||++++|++|++++.|+++.
T Consensus       155 AraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~---~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~  230 (250)
T 2d2e_A          155 LQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG---PNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPEL  230 (250)
T ss_dssp             HHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS---TTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred             HHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh---cCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence            9999999999999999999999999999999999853   48899999999999875  59999999999999999873

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=100.00  E-value=1.6e-53  Score=390.35  Aligned_cols=218  Identities=26%  Similarity=0.316  Sum_probs=176.5

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcC--CCCCCCeEEECCEeCCCCCHHHH-h
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWL-R  155 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl--~~~~~G~I~i~g~~i~~~~~~~~-r  155 (325)
                      .|+++||+++|++   +++|+|+||+|++||+++|+||||||||||+|+|+|+  ++|++|+|.++|+++...+.... +
T Consensus        20 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~   96 (267)
T 2zu0_C           20 MLSIKDLHVSVED---KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG   96 (267)
T ss_dssp             CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred             eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence            5999999999964   3699999999999999999999999999999999999  57899999999999876665444 4


Q ss_pred             cceEEEccCCcCc-cccHHHHHhcCC--------CCCCCHHHHHHHHHHcCHHHHHHhCCCC-cccccCCC-CCChHHHH
Q 020527          156 EKIGFVGQEPQLL-QMDIKSNIMYGC--------PKDVKNEDIEWAAKQAYVHEFILSLPCG-YETLVDDD-LLSGGQKQ  224 (325)
Q Consensus       156 ~~i~~v~Q~~~l~-~~tv~enl~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~LSgGq~Q  224 (325)
                      +.|+|+||++.+| ..|+.||+.++.        ......+..     ...+.++++.+... ........ +|||||||
T Consensus        97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~Q  171 (267)
T 2zu0_C           97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDF-----QDLMEEKIALLKMPEDLLTRSVNVGFSGGEKK  171 (267)
T ss_dssp             HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHH-----HHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHH
T ss_pred             CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHH-----HHHHHHHHHHcCCChhHhcCCcccCCCHHHHH
Confidence            5699999999888 479999986531        000111111     11233455554332 11122233 59999999


Q ss_pred             HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh--cCEEEEEeCCEEEEEcC
Q 020527          225 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVIDDGRIIEVGN  302 (325)
Q Consensus       225 Rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~--~d~v~~l~~G~i~~~g~  302 (325)
                      ||+|||||+.+|++|||||||++||+.++..+.+.|+++++   +|+|||++|||++.+..  ||++++|++|++++.|+
T Consensus       172 Rv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~---~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~  248 (267)
T 2zu0_C          172 RNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD---GKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD  248 (267)
T ss_dssp             HHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC---SSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEEC
T ss_pred             HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcC
Confidence            99999999999999999999999999999999999998853   48899999999998864  89999999999999999


Q ss_pred             hHHHh
Q 020527          303 HAELL  307 (325)
Q Consensus       303 ~~~l~  307 (325)
                      ++++.
T Consensus       249 ~~~~~  253 (267)
T 2zu0_C          249 FTLVK  253 (267)
T ss_dssp             TTHHH
T ss_pred             HHHHh
Confidence            98764

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=100.00  E-value=4.5e-53  Score=384.40  Aligned_cols=203  Identities=26%  Similarity=0.409  Sum_probs=170.3

Q ss_pred             cEEEEEEEEECC-CCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 020527           79 HVQFVNISFHYP-SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK  157 (325)
Q Consensus        79 ~i~~~~v~~~y~-~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~  157 (325)
                      +|+++||+++|+ +   .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.             ++++
T Consensus         4 ~l~i~~l~~~y~~~---~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~   67 (253)
T 2nq2_C            4 ALSVENLGFYYQAE---NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQS   67 (253)
T ss_dssp             EEEEEEEEEEETTT---TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSC
T ss_pred             eEEEeeEEEEeCCC---CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------Eecc
Confidence            489999999997 4   3699999999999999999999999999999999999999999998             2467


Q ss_pred             eEEEccCCcCc-cccHHHHHhcCCCCC------CCH---HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 020527          158 IGFVGQEPQLL-QMDIKSNIMYGCPKD------VKN---EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA  227 (325)
Q Consensus       158 i~~v~Q~~~l~-~~tv~enl~~~~~~~------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~  227 (325)
                      |+|+||++.++ ..||+||+.++....      ...   +.+.++++.+++.++.++         ...+|||||||||+
T Consensus        68 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LSgGq~qrv~  138 (253)
T 2nq2_C           68 IGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKR---------EFTSLSGGQRQLIL  138 (253)
T ss_dssp             EEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTS---------BGGGSCHHHHHHHH
T ss_pred             EEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcC---------ChhhCCHHHHHHHH
Confidence            99999999887 689999998863110      111   223334444443332222         23679999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHH
Q 020527          228 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAEL  306 (325)
Q Consensus       228 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l  306 (325)
                      |||||+.+|++|||||||++||+.++..+.+.|++++++  .|+|||++|||++.+. .||++++|++|+ ++.|+++++
T Consensus       139 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~--~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~  215 (253)
T 2nq2_C          139 IARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQS--QNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNI  215 (253)
T ss_dssp             HHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHT--SCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred             HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHH
Confidence            999999999999999999999999999999999999753  3789999999999985 599999999999 999999998


Q ss_pred             hhc
Q 020527          307 LHK  309 (325)
Q Consensus       307 ~~~  309 (325)
                      ++.
T Consensus       216 ~~~  218 (253)
T 2nq2_C          216 LTS  218 (253)
T ss_dssp             CCH
T ss_pred             hCc
Confidence            653

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=100.00  E-value=2e-52  Score=381.99  Aligned_cols=208  Identities=21%  Similarity=0.299  Sum_probs=174.2

Q ss_pred             EEEEEEEEECCCC-CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           80 VQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        80 i~~~~v~~~y~~~-~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      |+++|++++|++. ..+++|+|+||+|+ ||+++|+||||||||||+|+|+|++ |++|+|.++|+++...  .. ++++
T Consensus         2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i   76 (263)
T 2pjz_A            2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY   76 (263)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred             EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence            7899999999641 00359999999999 9999999999999999999999999 9999999999988643  23 6789


Q ss_pred             E-EEccCCcCccccHHHHHhcCCC-CCCCHHHHHHHHHHcCHH-HHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 020527          159 G-FVGQEPQLLQMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD  235 (325)
Q Consensus       159 ~-~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~  235 (325)
                      + |+||++.+ ..||+||+.++.. .....+.+.++++..++. +..++         ...+||||||||++|||||+.+
T Consensus        77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~---------~~~~LSgGqkqRv~lAraL~~~  146 (263)
T 2pjz_A           77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRR---------KLYKLSAGQSVLVRTSLALASQ  146 (263)
T ss_dssp             EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGS---------BGGGSCHHHHHHHHHHHHHHTC
T ss_pred             EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcC---------ChhhCCHHHHHHHHHHHHHHhC
Confidence            9 99999988 8999999987421 122234444555554443 32222         2367999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcC-EEEEEeCCEEEEEcChHHHhh
Q 020527          236 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVD-RIVVIDDGRIIEVGNHAELLH  308 (325)
Q Consensus       236 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d-~v~~l~~G~i~~~g~~~~l~~  308 (325)
                      |++|||||||++||+.++..+.+.|++++     . |||++|||++.+. .|| ++++|++|++++.|+++++++
T Consensus       147 p~lllLDEPts~LD~~~~~~l~~~L~~~~-----~-tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~  215 (263)
T 2pjz_A          147 PEIVGLDEPFENVDAARRHVISRYIKEYG-----K-EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE  215 (263)
T ss_dssp             CSEEEEECTTTTCCHHHHHHHHHHHHHSC-----S-EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred             CCEEEEECCccccCHHHHHHHHHHHHHhc-----C-cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence            99999999999999999999999998873     2 9999999999986 499 999999999999999999874

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=100.00  E-value=2.7e-51  Score=379.37  Aligned_cols=211  Identities=27%  Similarity=0.445  Sum_probs=170.4

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .|+++||++.+     .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|             +|
T Consensus        40 ~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~i  101 (290)
T 2bbs_A           40 SLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI  101 (290)
T ss_dssp             ----------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------CE
T ss_pred             eEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------EE
Confidence            59999999864     2599999999999999999999999999999999999999999999988             49


Q ss_pred             EEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCC
Q 020527          159 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDP  236 (325)
Q Consensus       159 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p  236 (325)
                      +|+||++.+|+.||+||+. +..  .........++..++.+.++.++.+..+..+  ..+||||||||++|||||+.+|
T Consensus       102 ~~v~Q~~~l~~~tv~enl~-~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p  178 (290)
T 2bbs_A          102 SFCSQNSWIMPGTIKENII-GVS--YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA  178 (290)
T ss_dssp             EEECSSCCCCSSBHHHHHH-TTC--CCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCC
T ss_pred             EEEeCCCccCcccHHHHhh-Ccc--cchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCC
Confidence            9999999998889999998 532  2233444566667888888887766554443  3689999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHH-HHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHH
Q 020527          237 AILLLDEATSALDSESEHYVKGVL-HALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYA  314 (325)
Q Consensus       237 ~llllDEPts~LD~~~~~~i~~~l-~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~  314 (325)
                      ++|||||||++||+.++..+.+.+ +++.    .|+|||++|||++.+..||++++|++|++++.|++++++.....|.
T Consensus       179 ~lllLDEPts~LD~~~~~~i~~~ll~~~~----~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~  253 (290)
T 2bbs_A          179 DLYLLDSPFGYLDVLTEKEIFESCVCKLM----ANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPDFS  253 (290)
T ss_dssp             SEEEEESTTTTCCHHHHHHHHHHCCCCCT----TTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHHHCHHHH
T ss_pred             CEEEEECCcccCCHHHHHHHHHHHHHHhh----CCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhhhcHHHH
Confidence            999999999999999999998864 4442    3789999999999887799999999999999999999876443343

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=100.00  E-value=8.7e-52  Score=366.82  Aligned_cols=196  Identities=23%  Similarity=0.371  Sum_probs=161.5

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .|+++||+++|++    ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.     .+++.|
T Consensus        10 ~l~~~~ls~~y~~----~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i   80 (214)
T 1sgw_A           10 KLEIRDLSVGYDK----PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI   80 (214)
T ss_dssp             EEEEEEEEEESSS----EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred             eEEEEEEEEEeCC----eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence            5999999999963    5999999999999999999999999999999999999999999999999875     257789


Q ss_pred             EEEccCCcCcc-ccHHHHHhcCCC--C-CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 020527          159 GFVGQEPQLLQ-MDIKSNIMYGCP--K-DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR  234 (325)
Q Consensus       159 ~~v~Q~~~l~~-~tv~enl~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~  234 (325)
                      +|+||++.+|+ .||+||+.++..  . ....+.+.++++.+++.+.          .....+||||||||++|||||+.
T Consensus        81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~LSgGqkqrv~laraL~~  150 (214)
T 1sgw_A           81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL----------KKKLGELSQGTIRRVQLASTLLV  150 (214)
T ss_dssp             EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT----------TSBGGGSCHHHHHHHHHHHHTTS
T ss_pred             EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC----------CCChhhCCHHHHHHHHHHHHHHh
Confidence            99999998885 699999987421  1 1123344444444433221          22236799999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEE
Q 020527          235 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI  297 (325)
Q Consensus       235 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i  297 (325)
                      +|++|||||||++||+.++..+.+.|+++++   .|+|||++|||++.+.. ||+++++ +|+|
T Consensus       151 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~---~g~tiiivtHd~~~~~~~~d~v~~~-~~~~  210 (214)
T 1sgw_A          151 NAEIYVLDDPVVAIDEDSKHKVLKSILEILK---EKGIVIISSREELSYCDVNENLHKY-STKI  210 (214)
T ss_dssp             CCSEEEEESTTTTSCTTTHHHHHHHHHHHHH---HHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred             CCCEEEEECCCcCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence            9999999999999999999999999999864   27899999999999876 7887644 5655

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=100.00  E-value=4.3e-44  Score=361.19  Aligned_cols=203  Identities=27%  Similarity=0.292  Sum_probs=164.8

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .++++|++++|++    ..|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+             +.+|
T Consensus       357 ~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i  419 (607)
T 3bk7_A          357 LVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTV  419 (607)
T ss_dssp             EEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCE
T ss_pred             EEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEE
Confidence            5999999999964    3799999999999999999999999999999999999999999976             2469


Q ss_pred             EEEccCCcCc-cccHHHHHhcC-CCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 020527          159 GFVGQEPQLL-QMDIKSNIMYG-CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP  236 (325)
Q Consensus       159 ~~v~Q~~~l~-~~tv~enl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p  236 (325)
                      +|+||++.++ ..||.||+... .......+.+.++         ++.+...........+|||||||||+|||||+++|
T Consensus       420 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~---------l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p  490 (607)
T 3bk7_A          420 AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTEL---------LKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDA  490 (607)
T ss_dssp             EEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHT---------HHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCC
T ss_pred             EEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHH---------HHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence            9999998764 68999998652 0000011122223         33322221122223679999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeC--CEEEEEcChHHHhhc
Q 020527          237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD--GRIIEVGNHAELLHK  309 (325)
Q Consensus       237 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~--G~i~~~g~~~~l~~~  309 (325)
                      ++|||||||++||+.++..+.++|+++.++  .|.|||+||||++++.. ||||++|++  |+++..|+|+++++.
T Consensus       491 ~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~~  564 (607)
T 3bk7_A          491 DIYLLDEPSAYLDVEQRLAVSRAIRHLMEK--NEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMREG  564 (607)
T ss_dssp             SEEEEECTTTTCCHHHHHHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred             CEEEEeCCccCCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHhh
Confidence            999999999999999999999999998643  47899999999999865 999999986  888889999888753

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=100.00  E-value=3.9e-44  Score=357.50  Aligned_cols=203  Identities=28%  Similarity=0.313  Sum_probs=163.9

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .++++|+++.|++    ..|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+             +.+|
T Consensus       287 ~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i  349 (538)
T 1yqt_A          287 LVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTV  349 (538)
T ss_dssp             EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCE
T ss_pred             EEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceE
Confidence            5999999999964    3799999999999999999999999999999999999999999975             2369


Q ss_pred             EEEccCCcC-ccccHHHHHhcC-CCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 020527          159 GFVGQEPQL-LQMDIKSNIMYG-CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP  236 (325)
Q Consensus       159 ~~v~Q~~~l-~~~tv~enl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p  236 (325)
                      +|+||++.. +..||.|++... .......+.+         .++++.+...........+|||||||||+|||||+.+|
T Consensus       350 ~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~---------~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p  420 (538)
T 1yqt_A          350 AYKPQYIKADYEGTVYELLSKIDASKLNSNFYK---------TELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDA  420 (538)
T ss_dssp             EEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHH---------HHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCC
T ss_pred             EEEecCCcCCCCCcHHHHHHhhhccCCCHHHHH---------HHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence            999999876 468999987642 0000011112         22333332221112223679999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeC--CEEEEEcChHHHhhc
Q 020527          237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD--GRIIEVGNHAELLHK  309 (325)
Q Consensus       237 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~--G~i~~~g~~~~l~~~  309 (325)
                      ++|||||||++||+.++..+.++|+++.++  .|.|||+||||++++.. ||||++|++  |+++..|+|+++++.
T Consensus       421 ~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~--~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~~  494 (538)
T 1yqt_A          421 DIYLLDEPSAYLDVEQRLAVSRAIRHLMEK--NEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMREG  494 (538)
T ss_dssp             SEEEEECTTTTCCHHHHHHHHHHHHHHHHH--HTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHhh
Confidence            999999999999999999999999998642  37899999999999865 999999986  788889999888753

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=100.00  E-value=2.3e-43  Score=351.51  Aligned_cols=202  Identities=20%  Similarity=0.277  Sum_probs=163.8

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .++++|+++.|++    ..|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++            +.+
T Consensus       269 ~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~i  332 (538)
T 3ozx_A          269 KMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QIL  332 (538)
T ss_dssp             EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CCE
T ss_pred             eEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------eee
Confidence            5899999999964    368899999999999999999999999999999999999999998754            358


Q ss_pred             EEEccCCcC-ccccHHHHHhcCCCCC--CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 020527          159 GFVGQEPQL-LQMDIKSNIMYGCPKD--VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD  235 (325)
Q Consensus       159 ~~v~Q~~~l-~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~  235 (325)
                      +|+||+... +..||++|+.+.....  .......++++..++.+..++         ...+|||||||||+|||||+.+
T Consensus       333 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LSGGq~QRv~iAraL~~~  403 (538)
T 3ozx_A          333 SYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLES---------NVNDLSGGELQKLYIAATLAKE  403 (538)
T ss_dssp             EEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTS---------BGGGCCHHHHHHHHHHHHHHSC
T ss_pred             EeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcC---------ChhhCCHHHHHHHHHHHHHHcC
Confidence            999999765 4789999997632111  112223334444444332222         2367999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeC--CEEEEEcChHHHh
Q 020527          236 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD--GRIIEVGNHAELL  307 (325)
Q Consensus       236 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~--G~i~~~g~~~~l~  307 (325)
                      |++|||||||++||+.++..+.++|+++.++  .|+|||+||||++++.. ||||++|++  |.+...+++.++.
T Consensus       404 p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~--~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~  476 (538)
T 3ozx_A          404 ADLYVLDQPSSYLDVEERYIVAKAIKRVTRE--RKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK  476 (538)
T ss_dssp             CSEEEEESTTTTCCHHHHHHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred             CCEEEEeCCccCCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence            9999999999999999999999999999753  48899999999999875 999999986  5566667766554

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-41  Score=342.79  Aligned_cols=202  Identities=22%  Similarity=0.321  Sum_probs=161.7

Q ss_pred             EEEEEECCCCCCCCceeeeeEEeeCC-----cEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 020527           83 VNISFHYPSRPTVPILNHVCLTIEAN-----EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK  157 (325)
Q Consensus        83 ~~v~~~y~~~~~~~iL~~isl~i~~G-----e~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~  157 (325)
                      ++++++|++.  ..+++++||++.+|     |+++|+||||||||||+|+|+|+++|++|+.      +.       +..
T Consensus       350 ~~~~~~y~~~--~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~  414 (608)
T 3j16_B          350 ASRAFSYPSL--KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLN  414 (608)
T ss_dssp             SSSCCEECCE--EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCC
T ss_pred             cceeEEecCc--ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCc
Confidence            5567778642  35889999999999     8899999999999999999999999999962      11       346


Q ss_pred             eEEEccCCcC-ccccHHHHHhcCCCC-CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 020527          158 IGFVGQEPQL-LQMDIKSNIMYGCPK-DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD  235 (325)
Q Consensus       158 i~~v~Q~~~l-~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~  235 (325)
                      ++|+||+... |..||++|+...... ........++++..++.+.         ......+|||||||||+|||||+.+
T Consensus       415 i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~---------~~~~~~~LSGGqkQRv~iAraL~~~  485 (608)
T 3j16_B          415 VSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDI---------IDQEVQHLSGGELQRVAIVLALGIP  485 (608)
T ss_dssp             EEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTT---------SSSBSSSCCHHHHHHHHHHHHTTSC
T ss_pred             EEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhh---------hcCChhhCCHHHHHHHHHHHHHHhC
Confidence            9999999765 578999998643211 1223333334444443322         2223468999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeC--CEEEEEcChHHHhhcC
Q 020527          236 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD--GRIIEVGNHAELLHKG  310 (325)
Q Consensus       236 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~--G~i~~~g~~~~l~~~~  310 (325)
                      |++|||||||+|||+.++..+.++|+++.++  .|+|||+||||++++.. ||||++|++  |+++..|+|+++++..
T Consensus       486 p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~--~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~  561 (608)
T 3j16_B          486 ADIYLIDEPSAYLDSEQRIICSKVIRRFILH--NKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTGC  561 (608)
T ss_dssp             CSEEEECCTTTTCCHHHHHHHHHHHHHHHHH--HTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHHH
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhhh
Confidence            9999999999999999999999999998642  48899999999999865 999999996  8999999999998763

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=100.00  E-value=2.9e-41  Score=345.37  Aligned_cols=209  Identities=23%  Similarity=0.352  Sum_probs=137.3

Q ss_pred             CceeeeeEEeeCCcEEEEEcCCCChHHHHH---------------------HHHHcCCCCC-------CCeEEECCEeCC
Q 020527           96 PILNHVCLTIEANEVVAIVGLSGSGKSTFV---------------------NLLLRLYEPS-------DGQIYIDGFPLT  147 (325)
Q Consensus        96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl---------------------~~l~gl~~~~-------~G~I~i~g~~i~  147 (325)
                      .+|+||||+|++||+++|+||||||||||+                     +++.|+.+|+       .|.|.++|.+..
T Consensus        32 ~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~  111 (670)
T 3ux8_A           32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTS  111 (670)
T ss_dssp             TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC--
T ss_pred             cceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhh
Confidence            599999999999999999999999999998                     9999999998       455666665443


Q ss_pred             CCCHHHHhcceEEEccCCcC-------------------c-cccHHHHHhcCCCCCCC--HHHHHHH-HH-HcCHHHHHH
Q 020527          148 DLDIRWLREKIGFVGQEPQL-------------------L-QMDIKSNIMYGCPKDVK--NEDIEWA-AK-QAYVHEFIL  203 (325)
Q Consensus       148 ~~~~~~~r~~i~~v~Q~~~l-------------------~-~~tv~enl~~~~~~~~~--~~~~~~~-~~-~~~~~~~~~  203 (325)
                      ..    .++.+++++|.+.+                   + .+||+||+.+.......  ....... .+ .....++++
T Consensus       112 ~~----~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  187 (670)
T 3ux8_A          112 RN----PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQ  187 (670)
T ss_dssp             -------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHH
T ss_pred             cc----chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHH
Confidence            21    23445555554322                   2 46899999764211100  0000000 00 001112345


Q ss_pred             hCCCCcc-cccCCCCCChHHHHHHHHHHHHcCCCC--EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCc
Q 020527          204 SLPCGYE-TLVDDDLLSGGQKQRIAIARAILRDPA--ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL  280 (325)
Q Consensus       204 ~~~~~~~-~~~~~~~LSgGq~QRv~iAral~~~p~--llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~  280 (325)
                      .+..... ......+|||||||||+|||||+.+|+  +|||||||++||+.++..+.++|+++++   .|.|||+||||+
T Consensus       188 ~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~---~g~tvi~vtHd~  264 (670)
T 3ux8_A          188 NVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD---LGNTLIVVEHDE  264 (670)
T ss_dssp             HTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHH---TTCEEEEECCCH
T ss_pred             HcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCH
Confidence            4443321 123346799999999999999999998  9999999999999999999999999975   388999999999


Q ss_pred             hHHHhcCEEEEE------eCCEEEEEcChHHHhhcCH
Q 020527          281 STIKAVDRIVVI------DDGRIIEVGNHAELLHKGR  311 (325)
Q Consensus       281 ~~~~~~d~v~~l------~~G~i~~~g~~~~l~~~~~  311 (325)
                      +.+..||+|++|      ++|++++.|+++++.+...
T Consensus       265 ~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~  301 (670)
T 3ux8_A          265 DTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPN  301 (670)
T ss_dssp             HHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTCTT
T ss_pred             HHHhhCCEEEEecccccccCCEEEEecCHHHHhcCch
Confidence            988779999999      8999999999999987643

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=100.00  E-value=1e-41  Score=343.85  Aligned_cols=198  Identities=25%  Similarity=0.265  Sum_probs=155.8

Q ss_pred             cEEE--------EEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeE---------EE
Q 020527           79 HVQF--------VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI---------YI  141 (325)
Q Consensus        79 ~i~~--------~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I---------~i  141 (325)
                      .|++        +||+++|++.  ..+|+++| +|++||+++|+||||||||||+|+|+|+++|++|++         .+
T Consensus        83 ~i~i~~l~~~~~~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~  159 (607)
T 3bk7_A           83 AISIVNLPEQLDEDCVHRYGVN--AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAF  159 (607)
T ss_dssp             CCEEEEECTTGGGSEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHT
T ss_pred             eEEEecCCccccCCeEEEECCC--CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhhee
Confidence            4788        8999999753  24899999 999999999999999999999999999999999996         34


Q ss_pred             CCEeCCCCCHH--HHhcceEEEccCCcC----ccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC
Q 020527          142 DGFPLTDLDIR--WLREKIGFVGQEPQL----LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD  215 (325)
Q Consensus       142 ~g~~i~~~~~~--~~r~~i~~v~Q~~~l----~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (325)
                      +|.++......  ..+..+++++|....    +..|++||+....    ..+.+.++++.+++.+..++.         .
T Consensus       160 ~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~----~~~~~~~~L~~lgL~~~~~~~---------~  226 (607)
T 3bk7_A          160 RGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD----EVGKFEEVVKELELENVLDRE---------L  226 (607)
T ss_dssp             TTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC----CSSCHHHHHHHTTCTTGGGSB---------G
T ss_pred             CCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhH----HHHHHHHHHHHcCCCchhCCC---------h
Confidence            55443211111  123468899997543    3359999986521    112344455555554333332         3


Q ss_pred             CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeC
Q 020527          216 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD  294 (325)
Q Consensus       216 ~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~  294 (325)
                      .+|||||||||+|||||+.+|++|||||||++||+.++..+.++|+++.+   .|.|||+||||++.+.. ||||++|++
T Consensus       227 ~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~---~g~tvIivsHdl~~~~~~adri~vl~~  303 (607)
T 3bk7_A          227 HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN---EGKAVLVVEHDLAVLDYLSDVIHVVYG  303 (607)
T ss_dssp             GGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHCSEEEEEES
T ss_pred             hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh---cCCEEEEEecChHHHHhhCCEEEEECC
Confidence            67999999999999999999999999999999999999999999999975   38899999999999865 999999986


Q ss_pred             C
Q 020527          295 G  295 (325)
Q Consensus       295 G  295 (325)
                      +
T Consensus       304 ~  304 (607)
T 3bk7_A          304 E  304 (607)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=100.00  E-value=8.9e-42  Score=340.52  Aligned_cols=197  Identities=24%  Similarity=0.255  Sum_probs=150.2

Q ss_pred             EEE-EEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeE---------EECCEeCCCC
Q 020527           80 VQF-VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI---------YIDGFPLTDL  149 (325)
Q Consensus        80 i~~-~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I---------~i~g~~i~~~  149 (325)
                      .++ +||+|+|++.  ..+|+++| +|++||+++|+||||||||||+|+|+|+++|++|++         .++|.++...
T Consensus        21 ~~~~~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~   97 (538)
T 1yqt_A           21 EQLEEDCVHRYGVN--AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNY   97 (538)
T ss_dssp             ---CCCEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHH
T ss_pred             hhHhcCcEEEECCc--cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHH
Confidence            355 5999999753  24899999 999999999999999999999999999999999995         3455443211


Q ss_pred             CHH--HHhcceEEEccCCcCc----cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHH
Q 020527          150 DIR--WLREKIGFVGQEPQLL----QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK  223 (325)
Q Consensus       150 ~~~--~~r~~i~~v~Q~~~l~----~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~  223 (325)
                      ...  ..+..+++++|...++    ..|+.+|+.....    .+++.++++.+++...         ......+||||||
T Consensus        98 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~----~~~~~~~l~~lgl~~~---------~~~~~~~LSgGek  164 (538)
T 1yqt_A           98 FEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADE----TGKLEEVVKALELENV---------LEREIQHLSGGEL  164 (538)
T ss_dssp             HHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCS----SSCHHHHHHHTTCTTT---------TTSBGGGCCHHHH
T ss_pred             HHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhH----HHHHHHHHHHcCCChh---------hhCChhhCCHHHH
Confidence            011  1124689999976443    2489998854210    1223344444444322         1222367999999


Q ss_pred             HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCC
Q 020527          224 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG  295 (325)
Q Consensus       224 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G  295 (325)
                      |||+|||||+.+|++|||||||++||+.++..+.+.|+++++   .|+|||+||||++++.. ||||++|++|
T Consensus       165 QRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~---~g~tvi~vsHd~~~~~~~~dri~vl~~~  234 (538)
T 1yqt_A          165 QRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE---EGKSVLVVEHDLAVLDYLSDIIHVVYGE  234 (538)
T ss_dssp             HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred             HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence            999999999999999999999999999999999999999975   38899999999999865 9999999864

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=100.00  E-value=1.3e-40  Score=347.57  Aligned_cols=197  Identities=25%  Similarity=0.426  Sum_probs=146.9

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .|+++|++|+|++. .+++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|.           .+|
T Consensus       671 mL~v~nLs~~Y~g~-~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I  738 (986)
T 2iw3_A          671 IVKVTNMEFQYPGT-SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRI  738 (986)
T ss_dssp             EEEEEEEEECCTTC-SSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCE
T ss_pred             eEEEEeeEEEeCCC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cce
Confidence            59999999999752 246999999999999999999999999999999999999999999999862           135


Q ss_pred             EEEccCCcC-----ccccHHHHHh--------------------------------------------------------
Q 020527          159 GFVGQEPQL-----LQMDIKSNIM--------------------------------------------------------  177 (325)
Q Consensus       159 ~~v~Q~~~l-----~~~tv~enl~--------------------------------------------------------  177 (325)
                      +|++|++..     +..|+.+++.                                                        
T Consensus       739 ~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e  818 (986)
T 2iw3_A          739 AYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYE  818 (986)
T ss_dssp             EEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred             EeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhh
Confidence            666665421     1223333332                                                        


Q ss_pred             ----------cCC----------------------------------------CCCCCHHHHHHHHHHcCHHHHHHhCCC
Q 020527          178 ----------YGC----------------------------------------PKDVKNEDIEWAAKQAYVHEFILSLPC  207 (325)
Q Consensus       178 ----------~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (325)
                                ++.                                        ......+.         +.+.++.+..
T Consensus       819 ~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~---------i~~~Le~lGL  889 (986)
T 2iw3_A          819 CSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKE---------IEEHCSMLGL  889 (986)
T ss_dssp             EEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHH---------HHHHHHHTTC
T ss_pred             hhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHH---------HHHHHHHcCC
Confidence                      110                                        00001112         2333444332


Q ss_pred             Ccc--cccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh
Q 020527          208 GYE--TLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA  285 (325)
Q Consensus       208 ~~~--~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~  285 (325)
                      ...  ......+|||||||||+|||||+.+|++|||||||++||+.+...+.+.|+++      +.|||+||||++++..
T Consensus       890 ~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~------g~tVIiISHD~e~v~~  963 (986)
T 2iw3_A          890 DPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF------EGGVIIITHSAEFTKN  963 (986)
T ss_dssp             CHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC------SSEEEEECSCHHHHTT
T ss_pred             CchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh------CCEEEEEECCHHHHHH
Confidence            111  11223579999999999999999999999999999999999999888888654      4599999999999865


Q ss_pred             -cCEEEEEeCCEEEEEcC
Q 020527          286 -VDRIVVIDDGRIIEVGN  302 (325)
Q Consensus       286 -~d~v~~l~~G~i~~~g~  302 (325)
                       ||++++|++|+++..|+
T Consensus       964 l~DrVivL~~G~Iv~~G~  981 (986)
T 2iw3_A          964 LTEEVWAVKDGRMTPSGH  981 (986)
T ss_dssp             TCCEEECCBTTBCCC---
T ss_pred             hCCEEEEEECCEEEEeCC
Confidence             99999999999987664

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=100.00  E-value=2.8e-38  Score=330.08  Aligned_cols=196  Identities=27%  Similarity=0.378  Sum_probs=160.9

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .+...|++++|+++   .+|+|+||+|++||+++|+||||||||||+|+|+|      |+|  +|.+...      +.++
T Consensus       435 ~L~~~~ls~~yg~~---~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~~  497 (986)
T 2iw3_A          435 DLCNCEFSLAYGAK---ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECRT  497 (986)
T ss_dssp             EEEEEEEEEEETTE---EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSCE
T ss_pred             eeEEeeEEEEECCE---EeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------ceeE
Confidence            47788999999753   69999999999999999999999999999999996      544  4543211      1247


Q ss_pred             EEEccCC-cCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCH-HHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 020527          159 GFVGQEP-QLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYV-HEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD  235 (325)
Q Consensus       159 ~~v~Q~~-~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~  235 (325)
                      +|++|++ .++ ..|+.||+.+. .... .+++.+.++..++ .+..++.+         .+||||||||++|||||+.+
T Consensus       498 ~~v~q~~~~~~~~ltv~e~l~~~-~~~~-~~~v~~~L~~lgL~~~~~~~~~---------~~LSGGqkQRvaLArAL~~~  566 (986)
T 2iw3_A          498 VYVEHDIDGTHSDTSVLDFVFES-GVGT-KEAIKDKLIEFGFTDEMIAMPI---------SALSGGWKMKLALARAVLRN  566 (986)
T ss_dssp             EETTCCCCCCCTTSBHHHHHHTT-CSSC-HHHHHHHHHHTTCCHHHHHSBG---------GGCCHHHHHHHHHHHHHHTT
T ss_pred             EEEcccccccccCCcHHHHHHHh-hcCH-HHHHHHHHHHcCCChhhhcCCc---------ccCCHHHHHHHHHHHHHhcC
Confidence            8999985 444 67999999862 1112 5566677777777 44555443         56999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEE-EEcChHHHhh
Q 020527          236 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII-EVGNHAELLH  308 (325)
Q Consensus       236 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~-~~g~~~~l~~  308 (325)
                      |++|||||||++||+.++..+.+.|++      .|.|+|+||||++++.. ||+|++|++|+++ ..|++++++.
T Consensus       567 P~lLLLDEPTs~LD~~~~~~l~~~L~~------~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~  635 (986)
T 2iw3_A          567 ADILLLDEPTNHLDTVNVAWLVNYLNT------CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK  635 (986)
T ss_dssp             CSEEEEESTTTTCCHHHHHHHHHHHHH------SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred             CCEEEEECCccCCCHHHHHHHHHHHHh------CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence            999999999999999999999999986      16799999999999865 9999999999997 5899988764

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=100.00  E-value=3.3e-39  Score=330.16  Aligned_cols=201  Identities=31%  Similarity=0.421  Sum_probs=146.1

Q ss_pred             CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHH----------------------cCCCCCCCeEEECCEeCCCCCHHH
Q 020527           96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL----------------------RLYEPSDGQIYIDGFPLTDLDIRW  153 (325)
Q Consensus        96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~----------------------gl~~~~~G~I~i~g~~i~~~~~~~  153 (325)
                      .+|+||||+|++||+++|+||||||||||+++|+                      |+.+ .+|.|.+++.++...+...
T Consensus       336 ~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~-~~~~i~~~~~~~~~~~~~~  414 (670)
T 3ux8_A          336 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEH-LDKVIDIDQSPIGRTPRSN  414 (670)
T ss_dssp             TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGG-CSEEEECCSSCSCSSTTCC
T ss_pred             cccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccc-cCceeEeccccCCCCCCcc
Confidence            5899999999999999999999999999998754                      3333 3568889888775432100


Q ss_pred             Hh-----------------------------------------cceEEEccCCcC-------------------------
Q 020527          154 LR-----------------------------------------EKIGFVGQEPQL-------------------------  167 (325)
Q Consensus       154 ~r-----------------------------------------~~i~~v~Q~~~l-------------------------  167 (325)
                      ..                                         ...|+++|+..+                         
T Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  494 (670)
T 3ux8_A          415 PATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTY  494 (670)
T ss_dssp             HHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCB
T ss_pred             hhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhheee
Confidence            00                                         011233332211                         


Q ss_pred             --------ccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcc-cccCCCCCChHHHHHHHHHHHHcCCC--
Q 020527          168 --------LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE-TLVDDDLLSGGQKQRIAIARAILRDP--  236 (325)
Q Consensus       168 --------~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~LSgGq~QRv~iAral~~~p--  236 (325)
                              +.+||+||+.+...  . . ....      ..+.+..+..... ......+|||||||||+|||||+.+|  
T Consensus       495 ~~~~~~~~~~ltv~e~l~~~~~--~-~-~~~~------~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~  564 (670)
T 3ux8_A          495 KGKNIAEVLDMTVEDALDFFAS--I-P-KIKR------KLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNG  564 (670)
T ss_dssp             TTBCHHHHHTSBHHHHHHHTTT--C-H-HHHH------HHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCS
T ss_pred             cCCCHHHHhhCCHHHHHHHHHH--h-h-hHHH------HHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCC
Confidence                    14688888877521  1 1 1111      1123334333221 12234679999999999999999886  


Q ss_pred             -CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEE------eCCEEEEEcChHHHhhc
Q 020527          237 -AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHK  309 (325)
Q Consensus       237 -~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l------~~G~i~~~g~~~~l~~~  309 (325)
                       ++|||||||++||+.++..+.++|+++++   .|+|||+||||++.+..||||++|      ++|+|++.|+++++.+.
T Consensus       565 p~llllDEPt~~LD~~~~~~i~~~l~~l~~---~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~  641 (670)
T 3ux8_A          565 RTLYILDEPTTGLHVDDIARLLDVLHRLVD---NGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEV  641 (670)
T ss_dssp             CEEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHTC
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHhC
Confidence             59999999999999999999999999975   388999999999988779999999      89999999999999765


Q ss_pred             C
Q 020527          310 G  310 (325)
Q Consensus       310 ~  310 (325)
                      .
T Consensus       642 ~  642 (670)
T 3ux8_A          642 K  642 (670)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.1e-39  Score=322.02  Aligned_cols=197  Identities=22%  Similarity=0.297  Sum_probs=144.6

Q ss_pred             EEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEE-----------ECCEeCCCCCHH
Q 020527           84 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY-----------IDGFPLTDLDIR  152 (325)
Q Consensus        84 ~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~-----------i~g~~i~~~~~~  152 (325)
                      |++++|+..  ...|++++ .+++||+++|+||||||||||+|+|+|+++|++|+|.           +.|.++..+...
T Consensus        82 ~~~~~Y~~~--~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~  158 (608)
T 3j16_B           82 HVTHRYSAN--SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTK  158 (608)
T ss_dssp             TEEEECSTT--SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHH
T ss_pred             CeEEEECCC--ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhH
Confidence            467888753  34677777 6999999999999999999999999999999999982           333222111111


Q ss_pred             HHhcce--EEEccCCcCc-------cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHH
Q 020527          153 WLREKI--GFVGQEPQLL-------QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK  223 (325)
Q Consensus       153 ~~r~~i--~~v~Q~~~l~-------~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~  223 (325)
                      .+.+.+  .+.+|....+       ..++.+++...  .....+.+.++++.+++....++.+         .+||||||
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~--~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGe~  227 (608)
T 3j16_B          159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR--MEKSPEDVKRYIKILQLENVLKRDI---------EKLSGGEL  227 (608)
T ss_dssp             HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHH--CCSCHHHHHHHHHHHTCTGGGGSCT---------TTCCHHHH
T ss_pred             HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhh--hhhHHHHHHHHHHHcCCcchhCCCh---------HHCCHHHH
Confidence            122222  2334432211       12566665442  1223455556666666544444333         67999999


Q ss_pred             HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEE
Q 020527          224 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI  297 (325)
Q Consensus       224 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i  297 (325)
                      |||+|||||+.+|++||||||||+||+.++..+.++++++++   .|+|||+||||++++.. ||||++|++|..
T Consensus       228 Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~---~g~tvi~vtHdl~~~~~~~drv~vl~~~~~  299 (608)
T 3j16_B          228 QRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA---PTKYVICVEHDLSVLDYLSDFVCIIYGVPS  299 (608)
T ss_dssp             HHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGT---TTCEEEEECSCHHHHHHHCSEEEEEESCTT
T ss_pred             HHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence            999999999999999999999999999999999999999974   47899999999999865 999999987653

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=100.00  E-value=7.7e-39  Score=318.93  Aligned_cols=192  Identities=20%  Similarity=0.273  Sum_probs=142.2

Q ss_pred             EEEEECCCCCCCCceeeeeEE-eeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeE-----------EECCEeCCCCCH
Q 020527           84 NISFHYPSRPTVPILNHVCLT-IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI-----------YIDGFPLTDLDI  151 (325)
Q Consensus        84 ~v~~~y~~~~~~~iL~~isl~-i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I-----------~i~g~~i~~~~~  151 (325)
                      +++.+|+.+    -++-..+. +++||++||+||||||||||+|+|+|+++|++|+|           .++|.++..+..
T Consensus         4 ~~~~~~~~~----~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~   79 (538)
T 3ozx_A            4 EVIHRYKVN----GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFK   79 (538)
T ss_dssp             CEEEESSTT----SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHH
T ss_pred             CCceecCCC----ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHH
Confidence            567889754    35555554 45899999999999999999999999999999998           567765532111


Q ss_pred             HHHh--cceEEEcc----CCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527          152 RWLR--EKIGFVGQ----EPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR  225 (325)
Q Consensus       152 ~~~r--~~i~~v~Q----~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR  225 (325)
                      ....  ..+...+|    .+.++.+++.+++.....    .+...++++..++....++         ...+||||||||
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~----~~~~~~~l~~l~l~~~~~~---------~~~~LSgGe~Qr  146 (538)
T 3ozx_A           80 ELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDE----RGKKDEVKELLNMTNLWNK---------DANILSGGGLQR  146 (538)
T ss_dssp             HHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCC----SSCHHHHHHHTTCGGGTTS---------BGGGCCHHHHHH
T ss_pred             HHhhcccchhhccchhhhhhhhccCcHHHHhhcchh----HHHHHHHHHHcCCchhhcC---------ChhhCCHHHHHH
Confidence            1111  12333343    344455688887753211    1223445555554333222         235799999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCE
Q 020527          226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR  296 (325)
Q Consensus       226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~  296 (325)
                      |+|||||+.+|++||||||||+||+.++..+.++|++++    +|+|||+||||++++.. ||+|++|++|.
T Consensus       147 v~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~----~g~tii~vsHdl~~~~~~~d~i~vl~~~~  214 (538)
T 3ozx_A          147 LLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL----KNKYVIVVDHDLIVLDYLTDLIHIIYGES  214 (538)
T ss_dssp             HHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHC----TTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred             HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHh----CCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence            999999999999999999999999999999999999984    27899999999999865 99999998753

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=7.1e-36  Score=311.38  Aligned_cols=209  Identities=30%  Similarity=0.423  Sum_probs=149.7

Q ss_pred             CceeeeeEEeeCCcEEEEEcCCCChHHHHH---------HHHHcCCCCC------CC------eEEECCEeCCCCC---H
Q 020527           96 PILNHVCLTIEANEVVAIVGLSGSGKSTFV---------NLLLRLYEPS------DG------QIYIDGFPLTDLD---I  151 (325)
Q Consensus        96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl---------~~l~gl~~~~------~G------~I~i~g~~i~~~~---~  151 (325)
                      ..|+||||+|++|++++|+||||||||||+         +++.+...+.      +|      .+.++..++....   +
T Consensus       598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~  677 (916)
T 3pih_A          598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP  677 (916)
T ss_dssp             TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred             ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence            479999999999999999999999999997         4444443333      23      2455554443211   0


Q ss_pred             H-------HH-------------------------------hcceEEEccCCcCcc------------------------
Q 020527          152 R-------WL-------------------------------REKIGFVGQEPQLLQ------------------------  169 (325)
Q Consensus       152 ~-------~~-------------------------------r~~i~~v~Q~~~l~~------------------------  169 (325)
                      .       ..                               .+..|+++++..+++                        
T Consensus       678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~  757 (916)
T 3pih_A          678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK  757 (916)
T ss_dssp             HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred             cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence            0       00                               123577777665432                        


Q ss_pred             ---------ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccc-ccCCCCCChHHHHHHHHHHHHcCCC---
Q 020527          170 ---------MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET-LVDDDLLSGGQKQRIAIARAILRDP---  236 (325)
Q Consensus       170 ---------~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~LSgGq~QRv~iAral~~~p---  236 (325)
                               +||.|++.|...  . . ..      ....+.++.+..++.. .....+|||||||||+|||||+++|   
T Consensus       758 g~~i~~vl~~tv~eal~f~~~--~-~-~~------~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p  827 (916)
T 3pih_A          758 GKNISDILDMTVDEALEFFKN--I-P-SI------KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGR  827 (916)
T ss_dssp             TBCHHHHHSSBHHHHHHHTTT--C-H-HH------HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSS
T ss_pred             cCCHHHHhhCCHHHHHHHHhc--c-h-hH------HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCC
Confidence                     345555544211  0 0 00      1122344444444322 2234689999999999999999875   


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEE------eCCEEEEEcChHHHhhcC
Q 020527          237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHKG  310 (325)
Q Consensus       237 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l------~~G~i~~~g~~~~l~~~~  310 (325)
                      +||||||||+|||+.+++.+++.|+++.+   .|.|||+||||++++..||+|++|      ++|+|++.|+|+++++..
T Consensus       828 ~LLILDEPTsGLD~~~~~~L~~lL~~L~~---~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~  904 (916)
T 3pih_A          828 TLYILDEPTVGLHFEDVRKLVEVLHRLVD---RGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNP  904 (916)
T ss_dssp             EEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCT
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCC
Confidence            79999999999999999999999999975   488999999999999889999999      899999999999999876


Q ss_pred             HHHHHHH
Q 020527          311 RLYAKLV  317 (325)
Q Consensus       311 ~~~~~~~  317 (325)
                      ..|...+
T Consensus       905 ~syt~~~  911 (916)
T 3pih_A          905 HSYTGRF  911 (916)
T ss_dssp             TCHHHHH
T ss_pred             chHHHHH
Confidence            6665443

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=100.00  E-value=1e-40  Score=309.84  Aligned_cols=241  Identities=14%  Similarity=0.154  Sum_probs=188.1

Q ss_pred             HHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEEEEEEE
Q 020527            7 GMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNIS   86 (325)
Q Consensus         7 ~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~   86 (325)
                      +|-+..+..+-+.+++|+.+..+ ..++..++..+..++++..+.+|+.++++.+++.....  .......+.|+++||+
T Consensus        32 a~~~a~~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~--~~~~~~~~~i~~~~vs  108 (305)
T 2v9p_A           32 AYEYALAAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGE--GSWKSILTFFNYQNIE  108 (305)
T ss_dssp             HHHHHHTTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSS--CCTHHHHHHHHHTTCC
T ss_pred             HHHHHHhcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC--CcccccCCeEEEEEEE
Confidence            34556667778888889888666 47899999999999999999999999998754321111  1111112248899999


Q ss_pred             EECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCc
Q 020527           87 FHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQ  166 (325)
Q Consensus        87 ~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~  166 (325)
                      |+|+    .++|+++||+|++|++++|+||||||||||+++|+|++   +|+|                  ++|++|++.
T Consensus       109 ~~y~----~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~  163 (305)
T 2v9p_A          109 LITF----INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSH  163 (305)
T ss_dssp             HHHH----HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSG
T ss_pred             EEcC----hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccc
Confidence            9996    25999999999999999999999999999999999999   8988                  356899999


Q ss_pred             CccccHHH-HHhcCCCCCCCHHHHHHHHHHcCHHHHHHh-CCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCC
Q 020527          167 LLQMDIKS-NIMYGCPKDVKNEDIEWAAKQAYVHEFILS-LPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEA  244 (325)
Q Consensus       167 l~~~tv~e-nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEP  244 (325)
                      +|..|+++ |+.++.  ...+          .++++++. ++.+++    +..||||||||   ||||+++|+|||    
T Consensus       164 lf~~ti~~~ni~~~~--~~~~----------~~~~~i~~~L~~gld----g~~LSgGqkQR---ARAll~~p~iLl----  220 (305)
T 2v9p_A          164 FWLASLADTRAALVD--DATH----------ACWRYFDTYLRNALD----GYPVSIDRKHK---AAVQIKAPPLLV----  220 (305)
T ss_dssp             GGGGGGTTCSCEEEE--EECH----------HHHHHHHHTTTGGGG----TCCEECCCSSC---CCCEECCCCEEE----
T ss_pred             cccccHHHHhhccCc--cccH----------HHHHHHHHHhHccCC----ccCcCHHHHHH---HHHHhCCCCEEE----
Confidence            99999997 998852  1221          22344554 554444    46799999999   999999999999    


Q ss_pred             CCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHHH
Q 020527          245 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKR  319 (325)
Q Consensus       245 ts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~  319 (325)
                      ||+||+.++..+..                 +||+++.+..||+| +|++|++++.|+++++   +..|++++..
T Consensus       221 Ts~LD~~~~~~i~~-----------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el---~~~y~~l~~~  274 (305)
T 2v9p_A          221 TSNIDVQAEDRYLY-----------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW---KSFFVRLWGR  274 (305)
T ss_dssp             EESSCSTTCGGGGG-----------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH---HHHHHHSTTT
T ss_pred             ECCCCHHHHHHHHH-----------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH---HHHHHHHHHH
Confidence            99999998866631                 28999988889999 9999999999999998   5567777654

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=100.00  E-value=9.8e-36  Score=308.96  Aligned_cols=212  Identities=28%  Similarity=0.406  Sum_probs=155.5

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHH-cCC-------CCCCC-------------
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-RLY-------EPSDG-------------  137 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~-gl~-------~~~~G-------------  137 (325)
                      .|+++|++.        .+|+||||+|++||+++|+|+||||||||+++|+ |.+       .+..|             
T Consensus       629 ~L~v~~l~~--------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~  700 (972)
T 2r6f_A          629 WLEVVGARE--------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK  700 (972)
T ss_dssp             EEEEEEECS--------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred             EEEEecCcc--------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence            488888851        3799999999999999999999999999999854 221       12333             


Q ss_pred             eEEECCEeCCCCC---HH-------HH---------hcceEEEccCCcCc------------------------------
Q 020527          138 QIYIDGFPLTDLD---IR-------WL---------REKIGFVGQEPQLL------------------------------  168 (325)
Q Consensus       138 ~I~i~g~~i~~~~---~~-------~~---------r~~i~~v~Q~~~l~------------------------------  168 (325)
                      .|.+++.++....   +.       ..         .+.+||++|.+.+.                              
T Consensus       701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce  780 (972)
T 2r6f_A          701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE  780 (972)
T ss_dssp             EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred             EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence            3788888774321   11       11         13468887753220                              


Q ss_pred             -------------------------cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCc-ccccCCCCCChHH
Q 020527          169 -------------------------QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGY-ETLVDDDLLSGGQ  222 (325)
Q Consensus       169 -------------------------~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~LSgGq  222 (325)
                                               .+|+.|++.+...  . . ...      ...+.++.+..++ .......+|||||
T Consensus       781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~--~-~-~~~------~~~~~L~~~gL~~~~l~~~~~~LSGGe  850 (972)
T 2r6f_A          781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFAS--I-P-KIK------RKLETLYDVGLGYMKLGQPATTLSGGE  850 (972)
T ss_dssp             TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCS--C-H-HHH------HHHHHHHHTTCSSSBTTCCGGGCCHHH
T ss_pred             ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhc--c-h-hHH------HHHHHHHHcCCCcccccCchhhCCHHH
Confidence                                     2355555554311  1 1 111      1234556555443 2223346799999


Q ss_pred             HHHHHHHHHHcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEE------e
Q 020527          223 KQRIAIARAILRDP---AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI------D  293 (325)
Q Consensus       223 ~QRv~iAral~~~p---~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l------~  293 (325)
                      ||||+|||+|+.+|   +||||||||+|||+.+...+.+.|+++.+   .|.|||+||||++++..||||++|      +
T Consensus       851 kQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~---~G~TVIvisHdl~~i~~aDrIivL~p~gG~~  927 (972)
T 2r6f_A          851 AQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD---NGDTVLVIEHNLDVIKTADYIIDLGPEGGDR  927 (972)
T ss_dssp             HHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECCCHHHHTTCSEEEEECSSSTTS
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEcCCHHHHHhCCEEEEEcCCCCCC
Confidence            99999999999875   99999999999999999999999999975   488999999999998779999999      7


Q ss_pred             CCEEEEEcChHHHhhcCH
Q 020527          294 DGRIIEVGNHAELLHKGR  311 (325)
Q Consensus       294 ~G~i~~~g~~~~l~~~~~  311 (325)
                      +|++++.|+++++.....
T Consensus       928 ~G~Iv~~g~~~el~~~~~  945 (972)
T 2r6f_A          928 GGQIVAVGTPEEVAEVKE  945 (972)
T ss_dssp             CCSEEEEESHHHHHTCTT
T ss_pred             CCEEEEecCHHHHHhCch
Confidence            899999999999987543

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=100.00  E-value=1.9e-35  Score=305.92  Aligned_cols=214  Identities=24%  Similarity=0.355  Sum_probs=154.9

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHH-HHcCC-------CC----------------
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNL-LLRLY-------EP----------------  134 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~-l~gl~-------~~----------------  134 (325)
                      .|+++|+++        .+|+||||+|++||+++|+|+||||||||+++ |+|++       +|                
T Consensus       502 ~L~v~~l~~--------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~  573 (842)
T 2vf7_A          502 WLELNGVTR--------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGS  573 (842)
T ss_dssp             EEEEEEEEE--------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CC
T ss_pred             eEEEEeeee--------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccc
Confidence            499999975        16999999999999999999999999999996 77654       23                


Q ss_pred             --CCC-------eEEECCEeCCCCCH----------HHHhc---------ceEEEccCC---------------------
Q 020527          135 --SDG-------QIYIDGFPLTDLDI----------RWLRE---------KIGFVGQEP---------------------  165 (325)
Q Consensus       135 --~~G-------~I~i~g~~i~~~~~----------~~~r~---------~i~~v~Q~~---------------------  165 (325)
                        .+|       .|.+++.++...+.          ..+|+         ..||.++..                     
T Consensus       574 ~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~  653 (842)
T 2vf7_A          574 ARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVE  653 (842)
T ss_dssp             CEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEET
T ss_pred             ccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchh
Confidence              356       68899887753221          11221         122322211                     


Q ss_pred             -cCc-------------------------cccHHHHHhcCC------CCCCCHHHHHHHHHHcCHHHHHHhCCCCcc-cc
Q 020527          166 -QLL-------------------------QMDIKSNIMYGC------PKDVKNEDIEWAAKQAYVHEFILSLPCGYE-TL  212 (325)
Q Consensus       166 -~l~-------------------------~~tv~enl~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  212 (325)
                       .++                         ..++.||+.+..      ... .. ..      ....+.++.+..++. ..
T Consensus       654 ~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~-~~-~~------~~~~~~L~~~gL~~~~l~  725 (842)
T 2vf7_A          654 LLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFAD-ES-AI------FRALDTLREVGLGYLRLG  725 (842)
T ss_dssp             TCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT-SH-HH------HHHHHHHHHTTCTTSBTT
T ss_pred             hhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhc-ch-HH------HHHHHHHHHcCCCccccc
Confidence             111                         134555543320      000 00 00      123455666655442 12


Q ss_pred             cCCCCCChHHHHHHHHHHHHcCC---CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEE
Q 020527          213 VDDDLLSGGQKQRIAIARAILRD---PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI  289 (325)
Q Consensus       213 ~~~~~LSgGq~QRv~iAral~~~---p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v  289 (325)
                      ....+|||||||||+|||+|+.+   |+||||||||+|||+.+...+.++|+++.+   .|.|||+||||++++..||||
T Consensus       726 ~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~---~G~tVIvisHdl~~i~~aDri  802 (842)
T 2vf7_A          726 QPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD---AGNTVIAVEHKMQVVAASDWV  802 (842)
T ss_dssp             CCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECCCHHHHTTCSEE
T ss_pred             CCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEcCCHHHHHhCCEE
Confidence            33468999999999999999996   799999999999999999999999999975   488999999999999679999


Q ss_pred             EEE------eCCEEEEEcChHHHhhcCH
Q 020527          290 VVI------DDGRIIEVGNHAELLHKGR  311 (325)
Q Consensus       290 ~~l------~~G~i~~~g~~~~l~~~~~  311 (325)
                      ++|      ++|+|++.|++++++....
T Consensus       803 i~L~p~~g~~~G~Iv~~g~~~el~~~~~  830 (842)
T 2vf7_A          803 LDIGPGAGEDGGRLVAQGTPAEVAQAAG  830 (842)
T ss_dssp             EEECSSSGGGCCSEEEEECHHHHTTCTT
T ss_pred             EEECCCCCCCCCEEEEEcCHHHHHhCch
Confidence            999      7999999999999987543

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=100.00  E-value=9.2e-34  Score=273.69  Aligned_cols=199  Identities=17%  Similarity=0.197  Sum_probs=142.4

Q ss_pred             ceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC--------------------------------------CCCCe
Q 020527           97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--------------------------------------PSDGQ  138 (325)
Q Consensus        97 iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~--------------------------------------~~~G~  138 (325)
                      +++++||++.+| +++|+||||||||||+++|.++..                                      +.+|+
T Consensus        50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~  128 (415)
T 4aby_A           50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA  128 (415)
T ss_dssp             TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred             ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence            799999999999 999999999999999999987764                                      45789


Q ss_pred             EEECCEeCCCCCHHHHhcc-eEEEccCCcCccccHHHHHhcCCCCCCCH--H----------------------------
Q 020527          139 IYIDGFPLTDLDIRWLREK-IGFVGQEPQLLQMDIKSNIMYGCPKDVKN--E----------------------------  187 (325)
Q Consensus       139 I~i~g~~i~~~~~~~~r~~-i~~v~Q~~~l~~~tv~enl~~~~~~~~~~--~----------------------------  187 (325)
                      +++||+++...+...+.+. +++++|++.++..+..++..+-.. ....  .                            
T Consensus       129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~-~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~  207 (415)
T 4aby_A          129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDR-RVTKEAQAYAAAHAAWREAVSRLERLQASESSKHP  207 (415)
T ss_dssp             EEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred             EEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHH-HhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence            9999999865444555554 899999987764333322221000 0000  0                            


Q ss_pred             -------HH---HHHH---------------H--HcCHHHHHHhCCCCc------------------cc---cc--CCCC
Q 020527          188 -------DI---EWAA---------------K--QAYVHEFILSLPCGY------------------ET---LV--DDDL  217 (325)
Q Consensus       188 -------~~---~~~~---------------~--~~~~~~~~~~~~~~~------------------~~---~~--~~~~  217 (325)
                             .+   ...+               .  ...+.+.+..+....                  +.   ..  ++.+
T Consensus       208 ~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  287 (415)
T 4aby_A          208 TSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGE  287 (415)
T ss_dssp             --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSC
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCC
Confidence                   00   0000               0  001112223222110                  00   00  0111


Q ss_pred             --------CChHHHHHHHHHHHHcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcC
Q 020527          218 --------LSGGQKQRIAIARAILRDP--AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVD  287 (325)
Q Consensus       218 --------LSgGq~QRv~iAral~~~p--~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d  287 (325)
                              ||||||||++|||+|+.+|  ++|||||||++||+.+...+.+.|+++.    +|.|||+||||++++..||
T Consensus       288 ~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~----~~~~vi~itH~~~~~~~~d  363 (415)
T 4aby_A          288 ELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA----DTRQVLVVTHLAQIAARAH  363 (415)
T ss_dssp             CCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT----TTSEEEEECSCHHHHTTCS
T ss_pred             cccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh----CCCEEEEEeCcHHHHhhcC
Confidence                    7999999999999999999  9999999999999999999999999985    3789999999998887799


Q ss_pred             EEEEE----eCCEEEEEc
Q 020527          288 RIVVI----DDGRIIEVG  301 (325)
Q Consensus       288 ~v~~l----~~G~i~~~g  301 (325)
                      ++++|    ++|+++...
T Consensus       364 ~i~~l~k~~~~G~~~~~~  381 (415)
T 4aby_A          364 HHYKVEKQVEDGRTVSHV  381 (415)
T ss_dssp             EEEEEEEEEETTEEEEEE
T ss_pred             eEEEEEEeccCCceEEEE
Confidence            99999    999987653

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-37  Score=301.91  Aligned_cols=195  Identities=15%  Similarity=0.133  Sum_probs=149.2

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCC-e-EEECCEeCCCCCHHHHhc
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-Q-IYIDGFPLTDLDIRWLRE  156 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G-~-I~i~g~~i~~~~~~~~r~  156 (325)
                      +++++||+|+|+         ++||++++|++++|+||||||||||+|+|+|+++|++| + |+++|.         .++
T Consensus       118 mi~~~nl~~~y~---------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~---------~~~  179 (460)
T 2npi_A          118 MKYIYNLHFMLE---------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD---------PQQ  179 (460)
T ss_dssp             HHHHHHHHHHHH---------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC---------TTS
T ss_pred             hhhhhhhhehhh---------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC---------ccC
Confidence            467778877762         79999999999999999999999999999999999999 9 999981         257


Q ss_pred             ceEEEccCCcCc----cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH-
Q 020527          157 KIGFVGQEPQLL----QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA-  231 (325)
Q Consensus       157 ~i~~v~Q~~~l~----~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra-  231 (325)
                      .++|+||++.+|    ..|++||+ ++........      ....+.++++.+  ++.......+|||||||||+|||| 
T Consensus       180 ~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~------~~~~~~~ll~~~--gl~~~~~~~~LSgGq~qrlalAra~  250 (460)
T 2npi_A          180 PIFTVPGCISATPISDILDAQLPT-WGQSLTSGAT------LLHNKQPMVKNF--GLERINENKDLYLECISQLGQVVGQ  250 (460)
T ss_dssp             CSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCC------SSCCBCCEECCC--CSSSGGGCHHHHHHHHHHHHHHHHH
T ss_pred             Ceeeeccchhhcccccccchhhhh-cccccccCcc------hHHHHHHHHHHh--CCCcccchhhhhHHHHHHHHHHHHH
Confidence            899999998654    25899998 7532100000      000111122222  222222235799999999999999 


Q ss_pred             -HcCCCCE----EEEeC-CCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCch------HHH-hcCE-----EEEEe
Q 020527          232 -ILRDPAI----LLLDE-ATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS------TIK-AVDR-----IVVID  293 (325)
Q Consensus       232 -l~~~p~l----lllDE-Pts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~------~~~-~~d~-----v~~l~  293 (325)
                       |+.+|++    ||||| ||++||+. ...+.++++++      ++|+|+||||.+      ++. .||+     |++|+
T Consensus       251 rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~------~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~  323 (460)
T 2npi_A          251 RLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL------NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIP  323 (460)
T ss_dssp             HHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT------TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEEC
T ss_pred             HhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh------CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEe
Confidence             9999999    99999 99999999 55566665544      678999999988      554 4999     99999


Q ss_pred             -CCEEEEEcChHHHhh
Q 020527          294 -DGRIIEVGNHAELLH  308 (325)
Q Consensus       294 -~G~i~~~g~~~~l~~  308 (325)
                       +|+++ .|+++++.+
T Consensus       324 k~G~iv-~g~~~~~~~  338 (460)
T 2npi_A          324 KLDGVS-AVDDVYKRS  338 (460)
T ss_dssp             CCTTCC-CCCHHHHHH
T ss_pred             CCCcEE-ECCHHHHhh
Confidence             99999 899987743

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.97  E-value=3.7e-30  Score=241.24  Aligned_cols=202  Identities=23%  Similarity=0.278  Sum_probs=136.5

Q ss_pred             eeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCC----------------------------------------------
Q 020527           99 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY----------------------------------------------  132 (325)
Q Consensus        99 ~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~----------------------------------------------  132 (325)
                      +++++++.+| +++|+||||||||||+.+|..++                                              
T Consensus        16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~   94 (322)
T 1e69_A           16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA   94 (322)
T ss_dssp             SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred             CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence            4678899999 99999999999999999999654                                              


Q ss_pred             ----CCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHHHHhcCCCCC--C------------CHHHHHHHH
Q 020527          133 ----EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKD--V------------KNEDIEWAA  193 (325)
Q Consensus       133 ----~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~enl~~~~~~~--~------------~~~~~~~~~  193 (325)
                          .+.+|.+++||.++...+.......+++.||+..++ .+++.+++.......  .            ..+++.+..
T Consensus        95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~  174 (322)
T 1e69_A           95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESF  174 (322)
T ss_dssp             EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHH
T ss_pred             EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence                234578899998874333445556788889888766 688988886531100  0            000111111


Q ss_pred             HHc------------CHH-HHHHhCCCCcccc--------cCCCCCChHHHHHHHHHHHHc----CCCCEEEEeCCCCCC
Q 020527          194 KQA------------YVH-EFILSLPCGYETL--------VDDDLLSGGQKQRIAIARAIL----RDPAILLLDEATSAL  248 (325)
Q Consensus       194 ~~~------------~~~-~~~~~~~~~~~~~--------~~~~~LSgGq~QRv~iAral~----~~p~llllDEPts~L  248 (325)
                      ...            .+. ...+.++.++...        .....||||||||++|||||+    .+|+++||||||++|
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L  254 (322)
T 1e69_A          175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL  254 (322)
T ss_dssp             HHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred             HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence            100            000 0001111122111        112479999999999999997    689999999999999


Q ss_pred             CHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEE--EEEeCCEE-EEEcChHH
Q 020527          249 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI--VVIDDGRI-IEVGNHAE  305 (325)
Q Consensus       249 D~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v--~~l~~G~i-~~~g~~~~  305 (325)
                      |+..+..+.+.++++.    .+.++|++||+++....||++  ++|.+|.. +...+.++
T Consensus       255 D~~~~~~l~~~l~~~~----~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~~~~~~~~~  310 (322)
T 1e69_A          255 DDYNAERFKRLLKENS----KHTQFIVITHNKIVMEAADLLHGVTMVNGVSAIVPVEVEK  310 (322)
T ss_dssp             CHHHHHHHHHHHHHHT----TTSEEEEECCCTTGGGGCSEEEEEEESSSCEEEEECCC--
T ss_pred             CHHHHHHHHHHHHHhc----CCCeEEEEECCHHHHhhCceEEEEEEeCCEEEEEEEEcch
Confidence            9999999999999883    367999999998776779986  88888864 33444444

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.97  E-value=2.6e-33  Score=247.18  Aligned_cols=157  Identities=18%  Similarity=0.223  Sum_probs=100.8

Q ss_pred             CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHH
Q 020527           96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSN  175 (325)
Q Consensus        96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~en  175 (325)
                      .+|+|+    ++||+++|+||||||||||+++|+|+ +|++|+|..  .++.. +....++++||+||++       +||
T Consensus        14 ~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~~~-~~~~~~~~ig~v~q~~-------~en   78 (208)
T 3b85_A           14 HYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IILTR-PAVEAGEKLGFLPGTL-------NEK   78 (208)
T ss_dssp             HHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEEEE-CSCCTTCCCCSSCC------------
T ss_pred             HHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEecC-CchhhhcceEEecCCH-------HHH
Confidence            588885    89999999999999999999999999 999999943  33221 1123467899999987       444


Q ss_pred             H-hcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHH
Q 020527          176 I-MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH  254 (325)
Q Consensus       176 l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~  254 (325)
                      + .+...   .............+.++++.   +         |  |||||++|||||+.+|++|||||||++    ++.
T Consensus        79 l~~~~~~---~~~~~~~~~~~~~~~~~l~~---g---------l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~  137 (208)
T 3b85_A           79 IDPYLRP---LHDALRDMVEPEVIPKLMEA---G---------I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPA  137 (208)
T ss_dssp             -CTTTHH---HHHHHTTTSCTTHHHHHHHT---T---------S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHH
T ss_pred             HHHHHHH---HHHHHHHhccHHHHHHHHHh---C---------C--chHHHHHHHHHHhcCCCEEEEeCCccc----cHH
Confidence            4 22100   00000000001112333432   1         2  999999999999999999999999999    788


Q ss_pred             HHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCE
Q 020527          255 YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR  296 (325)
Q Consensus       255 ~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~  296 (325)
                      .+.+.|+++ +   .|+||| +|||++.+..   ....++|.
T Consensus       138 ~l~~~l~~l-~---~g~tii-vtHd~~~~~~---~~~~~~G~  171 (208)
T 3b85_A          138 QMKMFLTRL-G---FGSKMV-VTGDITQVDL---PGGQKSGL  171 (208)
T ss_dssp             HHHHHHTTB-C---TTCEEE-EEEC---------------CC
T ss_pred             HHHHHHHHh-c---CCCEEE-EECCHHHHhC---cCCCCCcH
Confidence            889998887 3   378999 9999987654   33345653

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.96  E-value=1.7e-29  Score=240.72  Aligned_cols=81  Identities=28%  Similarity=0.449  Sum_probs=75.1

Q ss_pred             CCCChHHHHHHHHHHHHc------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEE
Q 020527          216 DLLSGGQKQRIAIARAIL------RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI  289 (325)
Q Consensus       216 ~~LSgGq~QRv~iAral~------~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v  289 (325)
                      .+|||||||||+|||||+      .+|++|||||||++||+.+...+.+.|+++.+   .|+|||+||||++.+..||++
T Consensus       278 ~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~---~g~tvi~itH~~~~~~~~d~~  354 (365)
T 3qf7_A          278 RGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER---LNKVIVFITHDREFSEAFDRK  354 (365)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG---SSSEEEEEESCHHHHTTCSCE
T ss_pred             hhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh---CCCEEEEEecchHHHHhCCEE
Confidence            579999999999999999      79999999999999999999999999999964   488999999999987779999


Q ss_pred             EEEeCCEEEE
Q 020527          290 VVIDDGRIIE  299 (325)
Q Consensus       290 ~~l~~G~i~~  299 (325)
                      ++|++|++++
T Consensus       355 ~~l~~G~i~~  364 (365)
T 3qf7_A          355 LRITGGVVVN  364 (365)
T ss_dssp             EEEETTEEC-
T ss_pred             EEEECCEEEe
Confidence            9999999875

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.96  E-value=1.4e-30  Score=222.37  Aligned_cols=149  Identities=19%  Similarity=0.241  Sum_probs=106.2

Q ss_pred             eeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcC--ccccHHHHHh
Q 020527          100 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQL--LQMDIKSNIM  177 (325)
Q Consensus       100 ~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l--~~~tv~enl~  177 (325)
                      |+||++++||+++|+||||||||||+|++.+      |...+        +...++   ++++|++.-  +..++++++.
T Consensus         1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~--------~~d~~~---g~~~~~~~~~~~~~~~~~~~~   63 (171)
T 4gp7_A            1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVI--------SSDFCR---GLMSDDENDQTVTGAAFDVLH   63 (171)
T ss_dssp             CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEE--------EHHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred             CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEE--------ccHHHH---HHhcCcccchhhHHHHHHHHH
Confidence            6899999999999999999999999999642      21111        122232   677787632  2334444332


Q ss_pred             cCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC-CCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH-----
Q 020527          178 YGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD-DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE-----  251 (325)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~-----  251 (325)
                      ..         . .        ..+.   .++..... ....|||||||++||||++.+|++|+|||||++||+.     
T Consensus        64 ~~---------~-~--------~~~~---~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~  122 (171)
T 4gp7_A           64 YI---------V-S--------KRLQ---LGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT  122 (171)
T ss_dssp             HH---------H-H--------HHHH---TTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred             HH---------H-H--------HHHh---CCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence            10         0 0        0011   12222111 2347999999999999999999999999999999999     


Q ss_pred             -----------HHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEE
Q 020527          252 -----------SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI  289 (325)
Q Consensus       252 -----------~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v  289 (325)
                                 ....+.+.++++++   +|.|+|++|||++++..++++
T Consensus       123 ~~~~~~~vi~~~~~~l~~~l~~l~~---~g~tvi~vtH~~~~~~~~~~~  168 (171)
T 4gp7_A          123 DRQVEEYVIRKHTQQMKKSIKGLQR---EGFRYVYILNSPEEVEEVVFE  168 (171)
T ss_dssp             SCCCCHHHHHHHHHHHHHHSTTHHH---HTCSEEEEECSHHHHHHEEEE
T ss_pred             CCCCCHHHHHHHHHHhhhhhhhHHh---cCCcEEEEeCCHHHhhhhhhc
Confidence                       55888888888765   388999999999999877665

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.95  E-value=1.3e-32  Score=258.94  Aligned_cols=214  Identities=13%  Similarity=0.158  Sum_probs=143.2

Q ss_pred             hH-HHHhcC----CcCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHhcCCCCccccccccc-cCCcc
Q 020527            6 GG-MSIMIG----QVSPEQLTKYVLYCEWLIYATWRMVD-NLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKL-QRLMG   78 (325)
Q Consensus         6 g~-~~v~~g----~it~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~   78 (325)
                      |. |....+    .+|.+.+.+++.+...+..+  .+.. ....+..+..+..|+..+++.|..... ...... .....
T Consensus        62 g~~~~~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~Ri~~~l~~p~~~~~-~~~~~ir~~~~~  138 (330)
T 2pt7_A           62 NGEWQPFDVRDRKAFSLSRLMHFARCCASFKKK--TIDNYENPILSSNLANGERVQIVLSPVTVNDE-TISISIRIPSKT  138 (330)
T ss_dssp             TSCEEEEECTTCGGGSHHHHHHHHHHHHHHTTC--CCCSSSCCEEEEECTTSCEEEEECTTTSSSTT-CCEEEEECCCCC
T ss_pred             CceEEEecCCcccCCCHHHHHHHHHHHHHHhCC--CCCCCCCeeEEEEcCCCcEEEEEEcCCccCCC-CceEEEeCCCCC
Confidence            55 555554    79999999888777665443  1111 111222223344566665543321100 000000 00001


Q ss_pred             cEE---------EEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCC
Q 020527           79 HVQ---------FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL  149 (325)
Q Consensus        79 ~i~---------~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~  149 (325)
                      .++         +++++| |  .   ++++++||++++|++++|+||||||||||+++|+|+++|++|.|.++|.+.  +
T Consensus       139 ~i~l~~l~~~g~~~~v~f-y--~---~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e--~  210 (330)
T 2pt7_A          139 TYPHSFFEEQGFYNLLDN-K--E---QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE--I  210 (330)
T ss_dssp             CCCHHHHHHTTTTTTSTT-H--H---HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC--C
T ss_pred             CCCHHHHHhCCCcCchhh-H--H---HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec--c
Confidence            122         333333 3  1   279999999999999999999999999999999999999999999998652  2


Q ss_pred             CHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 020527          150 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA  229 (325)
Q Consensus       150 ~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA  229 (325)
                      .....++.++++++                                                        |||+||++||
T Consensus       211 ~~~~~~~~i~~~~g--------------------------------------------------------gg~~~r~~la  234 (330)
T 2pt7_A          211 VFKHHKNYTQLFFG--------------------------------------------------------GNITSADCLK  234 (330)
T ss_dssp             CCSSCSSEEEEECB--------------------------------------------------------TTBCHHHHHH
T ss_pred             ccccchhEEEEEeC--------------------------------------------------------CChhHHHHHH
Confidence            21122344554430                                                        8999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCE
Q 020527          230 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR  296 (325)
Q Consensus       230 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~  296 (325)
                      |||..+|+++|+||||+.       ++.+.|+.+..   .+.|+|+++|+.+....|||+++|.+|.
T Consensus       235 ~aL~~~p~ilildE~~~~-------e~~~~l~~~~~---g~~tvi~t~H~~~~~~~~dri~~l~~g~  291 (330)
T 2pt7_A          235 SCLRMRPDRIILGELRSS-------EAYDFYNVLCS---GHKGTLTTLHAGSSEEAFIRLANMSSSN  291 (330)
T ss_dssp             HHTTSCCSEEEECCCCST-------HHHHHHHHHHT---TCCCEEEEEECSSHHHHHHHHHHHHHTS
T ss_pred             HHhhhCCCEEEEcCCChH-------HHHHHHHHHhc---CCCEEEEEEcccHHHHHhhhheehhcCC
Confidence            999999999999999982       34567777653   2457999999999667799999998885

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.95  E-value=5e-29  Score=214.50  Aligned_cols=147  Identities=16%  Similarity=0.142  Sum_probs=102.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI  189 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~  189 (325)
                      +++|+||||||||||+++|+|++.     |.++|.+.........++++||++|++     ++.+|+. +.. ....   
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~-~~~-~~~~---   66 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIF-SSK-FFTS---   66 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEE-EET-TCCC---
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHH-Hhh-cCCc---
Confidence            689999999999999999999985     556676543221113467899999986     2223321 100 0000   


Q ss_pred             HHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH-----HcCCCCEEEEeC--CCCCCCHHHHHHHHHHHHH
Q 020527          190 EWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA-----ILRDPAILLLDE--ATSALDSESEHYVKGVLHA  262 (325)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra-----l~~~p~llllDE--Pts~LD~~~~~~i~~~l~~  262 (325)
                                        .........+||||||||++||||     ++.+|+++||||  ||++||+...+.+.+.+++
T Consensus        67 ------------------~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~  128 (178)
T 1ye8_A           67 ------------------KKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD  128 (178)
T ss_dssp             ------------------SSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC
T ss_pred             ------------------cccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc
Confidence                              000011124699999999999996     999999999999  9999999999888887754


Q ss_pred             hhccCCCCeEEEEEec---CchHHHh-cCEEEEEeCCEEEE
Q 020527          263 LRNDCKTKRTVIVIAH---RLSTIKA-VDRIVVIDDGRIIE  299 (325)
Q Consensus       263 l~~~~~~g~tvi~vtH---~~~~~~~-~d~v~~l~~G~i~~  299 (325)
                            .+.|+|++||   |.+.+.. |||    .+|++++
T Consensus       129 ------~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~  159 (178)
T 1ye8_A          129 ------PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE  159 (178)
T ss_dssp             ------TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred             ------CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence                  2567888885   8888865 888    5667665

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.95  E-value=5.4e-31  Score=253.90  Aligned_cols=176  Identities=19%  Similarity=0.168  Sum_probs=134.7

Q ss_pred             CceeeeeEEeeCCc--------------------EEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHh
Q 020527           96 PILNHVCLTIEANE--------------------VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR  155 (325)
Q Consensus        96 ~iL~~isl~i~~Ge--------------------~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r  155 (325)
                      .+|++|||+|++|+                    +++|+||||||||||+|+|+|+++|++|+|.++|.++.       +
T Consensus        37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------~  109 (413)
T 1tq4_A           37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------M  109 (413)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------C
T ss_pred             HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------e
Confidence            58999999999999                    99999999999999999999999999999999997642       1


Q ss_pred             cceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChH--HHHHHHHHHHHc
Q 020527          156 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGG--QKQRIAIARAIL  233 (325)
Q Consensus       156 ~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgG--q~QRv~iAral~  233 (325)
                        .++++|++.....|++||+.++..    ...+.+.++..++.+.        +..  .. ||+|  |+||++|||||+
T Consensus       110 --~~~v~q~~~~~~ltv~D~~g~~~~----~~~~~~~L~~~~L~~~--------~~~--~~-lS~G~~~kqrv~la~aL~  172 (413)
T 1tq4_A          110 --ERHPYKHPNIPNVVFWDLPGIGST----NFPPDTYLEKMKFYEY--------DFF--II-ISATRFKKNDIDIAKAIS  172 (413)
T ss_dssp             --CCEEEECSSCTTEEEEECCCGGGS----SCCHHHHHHHTTGGGC--------SEE--EE-EESSCCCHHHHHHHHHHH
T ss_pred             --eEEeccccccCCeeehHhhcccch----HHHHHHHHHHcCCCcc--------CCe--EE-eCCCCccHHHHHHHHHHH
Confidence              278999875446899999876522    1123344444443221        111  12 8999  999999999999


Q ss_pred             C----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc----c--CCCCeEEEEEecCchH--HHh-cCEEE-EEe
Q 020527          234 R----------DPAILLLDEATSALDSESEHYVKGVLHALRN----D--CKTKRTVIVIAHRLST--IKA-VDRIV-VID  293 (325)
Q Consensus       234 ~----------~p~llllDEPts~LD~~~~~~i~~~l~~l~~----~--~~~g~tvi~vtH~~~~--~~~-~d~v~-~l~  293 (325)
                      .          +|+++++||||++||+.++.++.+.++++.+    +  .....+++++||+++.  ++. ||++. .|.
T Consensus       173 ~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lp  252 (413)
T 1tq4_A          173 MMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP  252 (413)
T ss_dssp             HTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred             hcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCc
Confidence            9          9999999999999999999999999998842    1  1123678899999886  654 88874 444


Q ss_pred             CC
Q 020527          294 DG  295 (325)
Q Consensus       294 ~G  295 (325)
                      .|
T Consensus       253 eg  254 (413)
T 1tq4_A          253 IY  254 (413)
T ss_dssp             GG
T ss_pred             cc
Confidence            44

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.94  E-value=3.5e-30  Score=226.32  Aligned_cols=171  Identities=15%  Similarity=0.113  Sum_probs=112.7

Q ss_pred             CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHH
Q 020527           95 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIK  173 (325)
Q Consensus        95 ~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~  173 (325)
                      .++++|  .+|++||+++|+||||||||||+|+|+|+++    .|.+++...........++.++|+||++.+| ..|+.
T Consensus         9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~   82 (207)
T 1znw_A            9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ   82 (207)
T ss_dssp             ------------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred             CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence            357888  7899999999999999999999999999986    3555542221111112356799999999877 46787


Q ss_pred             HHHhcCC-------CCCCCHHHHHHH----------HHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 020527          174 SNIMYGC-------PKDVKNEDIEWA----------AKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP  236 (325)
Q Consensus       174 enl~~~~-------~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p  236 (325)
                      +|+....       ..........+.          ++..++.++.++.+         ..||           ||+.+|
T Consensus        83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~lS-----------~l~~~p  142 (207)
T 1znw_A           83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP---------EAVT-----------VFLAPP  142 (207)
T ss_dssp             TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT---------TSEE-----------EEEECS
T ss_pred             CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC---------CcEE-----------EEEECC
Confidence            7763210       000112222221          22233444444443         3456           899999


Q ss_pred             CEEEEeCCCCCC----CHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEe
Q 020527          237 AILLLDEATSAL----DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID  293 (325)
Q Consensus       237 ~llllDEPts~L----D~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~  293 (325)
                      ++++|||||+++    |+..++++.+.++++.++  .|.|+|+||||++++.. ||||++|.
T Consensus       143 ~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~--~g~tvi~vtHdl~~~~~~~d~i~~l~  202 (207)
T 1znw_A          143 SWQDLQARLIGRGTETADVIQRRLDTARIELAAQ--GDFDKVVVNRRLESACAELVSLLVGT  202 (207)
T ss_dssp             CHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGG--GGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhh--ccCcEEEECCCHHHHHHHHHHHHHhc
Confidence            999999999998    788999999999998753  47899999999999865 99999984

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.94  E-value=5.2e-30  Score=249.39  Aligned_cols=197  Identities=18%  Similarity=0.123  Sum_probs=152.5

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCE---eCCCC-----C
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF---PLTDL-----D  150 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~---~i~~~-----~  150 (325)
                      .++++|+++.|+..  ..+|+++ |+|.+||+++|+||||||||||+++|+|+.+|++|.|.++|+   ++..+     .
T Consensus       131 ~l~~~~v~~~~~tg--~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~  207 (438)
T 2dpy_A          131 PLQRTPIEHVLDTG--VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILG  207 (438)
T ss_dssp             TTTSCCCCSBCCCS--CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTH
T ss_pred             ceEEeccceecCCC--ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhcc
Confidence            47899999999632  4699999 999999999999999999999999999999999999999998   44322     1


Q ss_pred             HHHHhcceEEEccC-CcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 020527          151 IRWLREKIGFVGQE-PQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI  228 (325)
Q Consensus       151 ~~~~r~~i~~v~Q~-~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i  228 (325)
                      ...+++.++|++|+ ..++ ..|+.+|+.+..      +. ... ....+..+++          ....||+|| |||+|
T Consensus       208 ~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a------e~-~~~-~~~~v~~~ld----------~l~~lS~g~-qrvsl  268 (438)
T 2dpy_A          208 PDGRARSVVIAAPADVSPLLRMQGAAYATRIA------ED-FRD-RGQHVLLIMD----------SLTRYAMAQ-REIAL  268 (438)
T ss_dssp             HHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH------HH-HHT-TTCEEEEEEE----------CHHHHHHHH-HHHHH
T ss_pred             ccccCceEEEEECCCCCHHHHHHHHHHHHHHH------HH-HHh-CCCCHHHHHH----------hHHHHHHHH-HHHHH
Confidence            23467889999995 3444 689999987631      00 000 0000000000          013589999 99999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccC-CCCe-----EEEEEecCchHHHhcCEEEEEeCCEEEEEcC
Q 020527          229 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC-KTKR-----TVIVIAHRLSTIKAVDRIVVIDDGRIIEVGN  302 (325)
Q Consensus       229 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~-~~g~-----tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~  302 (325)
                      |   +.+|++      |+|||+.+...+.++++++.+.. +.|.     ||+++|||++ ...||++++|.+|+++.+++
T Consensus       269 A---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~~  338 (438)
T 2dpy_A          269 A---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSRR  338 (438)
T ss_dssp             H---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECHH
T ss_pred             H---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeCC
Confidence            9   899998      99999999999999998885410 1264     9999999999 55699999999999999998


Q ss_pred             hHHHh
Q 020527          303 HAELL  307 (325)
Q Consensus       303 ~~~l~  307 (325)
                      +.++.
T Consensus       339 ~~~~~  343 (438)
T 2dpy_A          339 LAEAG  343 (438)
T ss_dssp             HHHTT
T ss_pred             HHHcc
Confidence            87764

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.94  E-value=5.9e-29  Score=231.10  Aligned_cols=176  Identities=14%  Similarity=0.137  Sum_probs=126.7

Q ss_pred             ceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCC----HHHH--hcceEEEccCCc-Cc-
Q 020527           97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRWL--REKIGFVGQEPQ-LL-  168 (325)
Q Consensus        97 iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~----~~~~--r~~i~~v~Q~~~-l~-  168 (325)
                      .++++||++++|++++|+||||||||||++.|+|+++|++|+|.++|.++....    ...+  +..|+|++|++. ++ 
T Consensus        89 ~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~  168 (302)
T 3b9q_A           89 SKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA  168 (302)
T ss_dssp             CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCH
T ss_pred             cccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCH
Confidence            346789999999999999999999999999999999999999999998875432    1222  457999999987 76 


Q ss_pred             cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC--EEEEeCCCC
Q 020527          169 QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA--ILLLDEATS  246 (325)
Q Consensus       169 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~--llllDEPts  246 (325)
                      ..|++||+.++......          .   .+++..+..........+||   |||++||||++.+|+  +|+|| ||+
T Consensus       169 ~~~v~e~l~~~~~~~~d----------~---~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pts  231 (302)
T 3b9q_A          169 ATVLSKAVKRGKEEGYD----------V---VLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNT  231 (302)
T ss_dssp             HHHHHHHHHHHHHTTCS----------E---EEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGG
T ss_pred             HHHHHHHHHHHHHcCCc----------c---hHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCC
Confidence            57999999764111000          0   01111111100000113588   999999999999999  99999 999


Q ss_pred             CCCHHHHHHHHHHHHHhhccCCCCeEEEEEec---------CchHHHh-cCEEEEEeCCEE
Q 020527          247 ALDSESEHYVKGVLHALRNDCKTKRTVIVIAH---------RLSTIKA-VDRIVVIDDGRI  297 (325)
Q Consensus       247 ~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH---------~~~~~~~-~d~v~~l~~G~i  297 (325)
                      |||+..+.      +++.+.  .|.|+|++||         .++.+.. .+.|.++..|+.
T Consensus       232 glD~~~~~------~~~~~~--~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~  284 (302)
T 3b9q_A          232 GLNMLPQA------REFNEV--VGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA  284 (302)
T ss_dssp             GGGGHHHH------HHHHHH--TCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred             CcCHHHHH------HHHHHh--cCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence            99998642      334322  3789999999         3344443 689999999965

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.93  E-value=4.2e-30  Score=228.00  Aligned_cols=171  Identities=14%  Similarity=0.154  Sum_probs=108.8

Q ss_pred             CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCH-HHHhcceEEEccCCcCcc-cc-H
Q 020527           96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREKIGFVGQEPQLLQ-MD-I  172 (325)
Q Consensus        96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~-~~~r~~i~~v~Q~~~l~~-~t-v  172 (325)
                      .-|+||||+|++|++++|+||||||||||+++|+|++ |  |+|.+ |.++..... ...++.++|+||++.+|+ .+ .
T Consensus        11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   86 (218)
T 1z6g_A           11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN   86 (218)
T ss_dssp             -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred             ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence            4799999999999999999999999999999999999 5  99999 877643321 224568999999987763 32 2


Q ss_pred             HHHHhcC---CC-CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH-----HHHHcCCCCEEEEeC
Q 020527          173 KSNIMYG---CP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI-----ARAILRDPAILLLDE  243 (325)
Q Consensus       173 ~enl~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i-----Aral~~~p~llllDE  243 (325)
                      .+++.++   .. .......+.++++..         .   .... ..+|||||+||++|     ||+++.+|++++|||
T Consensus        87 ~~~l~~~~~~~~~~g~~~~~i~~~l~~~---------~---~~il-~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde  153 (218)
T 1z6g_A           87 EDFLEYDNYANNFYGTLKSEYDKAKEQN---------K---ICLF-EMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLS  153 (218)
T ss_dssp             TCEEEEEEETTEEEEEEHHHHHHHHHTT---------C---EEEE-EECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHH
T ss_pred             cchhhhhhcccccCCCcHHHHHHHHhCC---------C---cEEE-EecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHH
Confidence            2233211   00 001122222232221         1   0000 13589999999999     899999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHhhccCC----CCeEEEEEecCchHH
Q 020527          244 ATSALDSESEHYVKGVLHALRNDCK----TKRTVIVIAHRLSTI  283 (325)
Q Consensus       244 Pts~LD~~~~~~i~~~l~~l~~~~~----~g~tvi~vtH~~~~~  283 (325)
                      ||+++|..++..+.+.+.++.++..    ...+.|+++||++.+
T Consensus       154 ~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea  197 (218)
T 1z6g_A          154 RLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLT  197 (218)
T ss_dssp             HHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHH
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHH
Confidence            9999999999999888877653210    123455555555543

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.92  E-value=1.1e-27  Score=226.92  Aligned_cols=174  Identities=14%  Similarity=0.146  Sum_probs=127.0

Q ss_pred             eeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCC----HHHH--hcceEEEccCCc-Cc-cc
Q 020527           99 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRWL--REKIGFVGQEPQ-LL-QM  170 (325)
Q Consensus        99 ~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~----~~~~--r~~i~~v~Q~~~-l~-~~  170 (325)
                      ..+||++++|++++|+||||||||||++.|+|+++|++|+|.++|.++....    ...+  +..|+|++|++. ++ ..
T Consensus       148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~  227 (359)
T 2og2_A          148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT  227 (359)
T ss_dssp             CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred             CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence            4688999999999999999999999999999999999999999998875432    1122  457999999987 66 57


Q ss_pred             cHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC--EEEEeCCCCCC
Q 020527          171 DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA--ILLLDEATSAL  248 (325)
Q Consensus       171 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~--llllDEPts~L  248 (325)
                      |++||+.++......          .   .+++..+..........+||   |||++||||++.+|+  +|+|| ||+||
T Consensus       228 tv~e~l~~~~~~~~d----------~---~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttgl  290 (359)
T 2og2_A          228 VLSKAVKRGKEEGYD----------V---VLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGL  290 (359)
T ss_dssp             HHHHHHHHHHHTTCS----------E---EEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGG
T ss_pred             hHHHHHHHHHhCCCH----------H---HHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCC
Confidence            999999764211000          0   01111111000000113588   999999999999999  99999 99999


Q ss_pred             CHHHHHHHHHHHHHhhccCCCCeEEEEEec---------CchHHHh-cCEEEEEeCCEE
Q 020527          249 DSESEHYVKGVLHALRNDCKTKRTVIVIAH---------RLSTIKA-VDRIVVIDDGRI  297 (325)
Q Consensus       249 D~~~~~~i~~~l~~l~~~~~~g~tvi~vtH---------~~~~~~~-~d~v~~l~~G~i  297 (325)
                      |+.++.      +++.+.  .|.|+|++||         .++.+.. ++.|.++..|+.
T Consensus       291 D~~~~~------~~~~~~--~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~  341 (359)
T 2og2_A          291 NMLPQA------REFNEV--VGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA  341 (359)
T ss_dssp             GGHHHH------HHHHHH--TCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred             CHHHHH------HHHHHh--cCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence            998652      333322  3789999999         3344443 789999999964

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.92  E-value=7.6e-28  Score=220.28  Aligned_cols=147  Identities=19%  Similarity=0.205  Sum_probs=94.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHHHHhcCCCCC--CCH
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKD--VKN  186 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~enl~~~~~~~--~~~  186 (325)
                      .++|+||||||||||+|+|+|+.+|++|+|.++|.++...   ..++.++|++|++.++ ..||.||+.|+....  ...
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~---~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~   80 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKT---VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW   80 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC------------CCCC---CSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcc---eeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence            4899999999999999999999999999999999887432   2357899999999887 679999998874321  112


Q ss_pred             HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcc
Q 020527          187 EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND  266 (325)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~  266 (325)
                      +.+.....    ..+.+.++         .+||||||||+++|||++.   ++++|||+++||+..    .+.++.+++ 
T Consensus        81 ~~i~~~~~----~~~~~~~~---------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~-  139 (270)
T 3sop_A           81 EPIEKYIN----EQYEKFLK---------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK-  139 (270)
T ss_dssp             HHHHHHHH----HHHHHHHH---------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT-
T ss_pred             HHHHHHHH----HHHHhhhH---------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh-
Confidence            22333222    22222222         3599999999999999886   999999999999987    355566643 


Q ss_pred             CCCCeEEEEEecCchHH
Q 020527          267 CKTKRTVIVIAHRLSTI  283 (325)
Q Consensus       267 ~~~g~tvi~vtH~~~~~  283 (325)
                        . .++|+|.|..+.+
T Consensus       140 --~-~~vI~Vi~K~D~l  153 (270)
T 3sop_A          140 --V-VNIIPVIAKADTM  153 (270)
T ss_dssp             --T-SEEEEEETTGGGS
T ss_pred             --c-CcEEEEEeccccC
Confidence              2 6889998877643

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=99.92  E-value=1.7e-24  Score=205.36  Aligned_cols=81  Identities=19%  Similarity=0.303  Sum_probs=74.6

Q ss_pred             CCChHHHHHHHHHHHHc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcC
Q 020527          217 LLSGGQKQRIAIARAIL---------RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVD  287 (325)
Q Consensus       217 ~LSgGq~QRv~iAral~---------~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d  287 (325)
                      .||||||||++||++|+         .+|+||||||||++||+..+..+.+.+.++.      .|+|++||. +.  .||
T Consensus       265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~------qt~i~~th~-~~--~~~  335 (359)
T 2o5v_A          265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP------QAIVTGTEL-AP--GAA  335 (359)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS------EEEEEESSC-CT--TCS
T ss_pred             hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC------cEEEEEEec-cc--cCC
Confidence            59999999999999999         8999999999999999999999999998762      599999994 44  899


Q ss_pred             EEEEEeCCEEEEEcChHHH
Q 020527          288 RIVVIDDGRIIEVGNHAEL  306 (325)
Q Consensus       288 ~v~~l~~G~i~~~g~~~~l  306 (325)
                      ++++|++|++++.|+++++
T Consensus       336 ~i~~l~~G~i~~~g~~~~~  354 (359)
T 2o5v_A          336 LTLRAQAGRFTPVADEEMQ  354 (359)
T ss_dssp             EEEEEETTEEEECCCTTTS
T ss_pred             EEEEEECCEEEecCCHHHH
Confidence            9999999999999998876

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.92  E-value=3.8e-29  Score=233.39  Aligned_cols=202  Identities=17%  Similarity=0.186  Sum_probs=136.9

Q ss_pred             HHHHHHHHhHhcCCCCccccccccccCCcccEEEEEEEEECCCCCCCCceeeeeEE-----------------------e
Q 020527           49 GATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLT-----------------------I  105 (325)
Q Consensus        49 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~iL~~isl~-----------------------i  105 (325)
                      .++.++.+.+..+.++..   ..........|+++||++.|.     ++++++++.                       +
T Consensus        16 ~~~~~l~~~~~~~~~~~~---~~~l~~~~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   87 (312)
T 3aez_A           16 RQWRALRMSTPLALTEEE---LVGLRGLGEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDR   87 (312)
T ss_dssp             HHHHGGGTTCCCCCCHHH---HHTTCCTTCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSS
T ss_pred             HHHHHHHhcCCCCCCHHH---HHhccCCCCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCC
Confidence            455666555554433211   111112233589999999994     477777764                       8


Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCC--
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD--  183 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~--  183 (325)
                      ++|+++||+||||||||||+++|+|+++|+.|.                 +++++|+|++.+++.|++||+.+.....  
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~  150 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFP  150 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSG
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhhccccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCC
Confidence            999999999999999999999999999998663                 4699999999888669999987531111  


Q ss_pred             --CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 020527          184 --VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLH  261 (325)
Q Consensus       184 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~  261 (325)
                        ...+.+.         ++++.+..+.. ......|||||+||+++|||++.+|+|||+|||++.+|+..     ..+.
T Consensus       151 ~~~d~~~~~---------~~L~~l~~~~~-~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~  215 (312)
T 3aez_A          151 ESYNRRALM---------RFVTSVKSGSD-YACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVS  215 (312)
T ss_dssp             GGBCHHHHH---------HHHHHHHTTCS-CEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGG
T ss_pred             hHHHHHHHH---------HHHHHhCCCcc-cCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHH
Confidence              1112222         22322221221 11124699999999999999999999999999999998622     1122


Q ss_pred             HhhccCCCCeEEEEEecCchHH-Hh-cCEEEEEeCCE
Q 020527          262 ALRNDCKTKRTVIVIAHRLSTI-KA-VDRIVVIDDGR  296 (325)
Q Consensus       262 ~l~~~~~~g~tvi~vtH~~~~~-~~-~d~v~~l~~G~  296 (325)
                      ++     .+ ..|+|+|+.+.. .+ ++|.+.+.+++
T Consensus       216 ~~-----~D-~~I~V~a~~~~~~~R~i~R~~~~rd~~  246 (312)
T 3aez_A          216 DL-----FD-FSLYVDARIEDIEQWYVSRFLAMRTTA  246 (312)
T ss_dssp             GG-----CS-EEEEEEECHHHHHHHHHHHHHHHTTTG
T ss_pred             Hh-----cC-cEEEEECCHHHHHHHHHHHHHHHHhcc
Confidence            22     23 458888888765 33 77776666653

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=99.91  E-value=1.2e-24  Score=230.25  Aligned_cols=171  Identities=16%  Similarity=0.171  Sum_probs=123.2

Q ss_pred             cEEEEE-----EEEECCCCCCCCceeeeeEEeeC-------CcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeC
Q 020527           79 HVQFVN-----ISFHYPSRPTVPILNHVCLTIEA-------NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL  146 (325)
Q Consensus        79 ~i~~~~-----v~~~y~~~~~~~iL~~isl~i~~-------Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i  146 (325)
                      .|+++|     |++.|.+.  ..+++|++|++++       |++++|+||||||||||||++ |++.+            
T Consensus       750 ~l~i~~~rHP~l~~~~~~~--~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------------  814 (1022)
T 2o8b_B          750 FLELKGSRHPCITKTFFGD--DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------------  814 (1022)
T ss_dssp             CEEEEEECCCC------CC--CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH------------
T ss_pred             eEEEEeccccEEEEEecCC--ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH------------
Confidence            599999     99999432  3699999999987       999999999999999999999 99863            


Q ss_pred             CCCCHHHHhcceE-EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527          147 TDLDIRWLREKIG-FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR  225 (325)
Q Consensus       147 ~~~~~~~~r~~i~-~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR  225 (325)
                              ..++| ||||++.  ..|+.|+|....                ++.+.+..   +      ...+|+++++ 
T Consensus       815 --------~aqiG~~Vpq~~~--~l~v~d~I~~ri----------------g~~d~~~~---~------~stf~~em~~-  858 (1022)
T 2o8b_B          815 --------MAQMGCYVPAEVC--RLTPIDRVFTRL----------------GASDRIMS---G------ESTFFVELSE-  858 (1022)
T ss_dssp             --------HHTTTCCEESSEE--EECCCSBEEEEC----------------C------------------CHHHHHHHH-
T ss_pred             --------HhheeEEeccCcC--CCCHHHHHHHHc----------------CCHHHHhh---c------hhhhHHHHHH-
Confidence                    23566 9999873  567777764210                11111110   1      1346777665 


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHH-HHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEE--EEc
Q 020527          226 IAIARAILRDPAILLLDEATSALDSESE-HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII--EVG  301 (325)
Q Consensus       226 v~iAral~~~p~llllDEPts~LD~~~~-~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~--~~g  301 (325)
                      +++|++++.+|+++||||||+|+|+... ..+.++++.+.+.  .|+++|++||+++.+.. ||++.++ +|++.  +.|
T Consensus       859 ~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~--~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~  935 (1022)
T 2o8b_B          859 TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAET--IKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVEN  935 (1022)
T ss_dssp             HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHT--SCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC---
T ss_pred             HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhc--CCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEec
Confidence            9999999999999999999999999874 5578888888652  37899999999999875 8998887 48876  444


Q ss_pred             Ch
Q 020527          302 NH  303 (325)
Q Consensus       302 ~~  303 (325)
                      .+
T Consensus       936 ~~  937 (1022)
T 2o8b_B          936 EC  937 (1022)
T ss_dssp             --
T ss_pred             Cc
Confidence            44

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.91  E-value=2.3e-26  Score=217.49  Aligned_cols=194  Identities=16%  Similarity=0.133  Sum_probs=141.0

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCC-------CCH
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD-------LDI  151 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~-------~~~  151 (325)
                      .++++++++.|+..  ..+++++ |+|.+||+++|+||||||||||+++|+|+.+|+.|.|.+.|++..+       ...
T Consensus        45 ~i~~~~l~~~~~tg--~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~  121 (347)
T 2obl_A           45 PLLRQVIDQPFILG--VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ  121 (347)
T ss_dssp             STTCCCCCSEECCS--CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred             CeeecccceecCCC--CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence            47899999999732  4699999 9999999999999999999999999999999999999998865211       111


Q ss_pred             HHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccc---cCCCCCChHHHHHHHH
Q 020527          152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETL---VDDDLLSGGQKQRIAI  228 (325)
Q Consensus       152 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~LSgGq~QRv~i  228 (325)
                      ..+++.+.+++|...    +..             .++........+.+.....  +.+..   .....||+|| ||+++
T Consensus       122 ~~~~~~v~~~~~~~~----~~~-------------~r~~~~~~~~~~ae~~~~~--~~~vl~~ld~~~~lS~g~-r~v~l  181 (347)
T 2obl_A          122 STLSKCVLVVTTSDR----PAL-------------ERMKAAFTATTIAEYFRDQ--GKNVLLMMDSVTRYARAA-RDVGL  181 (347)
T ss_dssp             HHHTTEEEEEECTTS----CHH-------------HHHHHHHHHHHHHHHHHTT--TCEEEEEEETHHHHHHHH-HHHHH
T ss_pred             hhhhceEEEEECCCC----CHH-------------HHHHHHHHHHHHHHHHHhc--cccHHHHHhhHHHHHHHH-HHHHH
Confidence            223445666666432    111             1111222222222222111  11110   0124689999 99999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCe-----EEEEEecCchHHHhcCEEEEEeCCEEEEEcCh
Q 020527          229 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR-----TVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNH  303 (325)
Q Consensus       229 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~-----tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~  303 (325)
                      |   +.+|++      |+|||+.....+.++++++.+. +.|.     ||+++|||++ ...||++++|.+|+|+.++++
T Consensus       182 a---l~~p~~------t~Gldp~~~~~l~~ller~~~~-~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l  250 (347)
T 2obl_A          182 A---SGEPDV------RGGFPPSVFSSLPKLLERAGPA-PKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTREL  250 (347)
T ss_dssp             H---TTCCCC------BTTBCHHHHHHHHHHHTTCEEC-SSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHH
T ss_pred             H---cCCCCc------ccCCCHHHHHHHHHHHHHHhCC-CCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCH
Confidence            9   688887      9999999999999999988641 2477     9999999999 445999999999999999887


Q ss_pred             HHH
Q 020527          304 AEL  306 (325)
Q Consensus       304 ~~l  306 (325)
                      .++
T Consensus       251 ~~~  253 (347)
T 2obl_A          251 AEE  253 (347)
T ss_dssp             HTT
T ss_pred             HHc
Confidence            765

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.91  E-value=5e-27  Score=233.73  Aligned_cols=179  Identities=12%  Similarity=0.091  Sum_probs=124.5

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeE-EeeCCcEEEEEcCCCChHHHHHHH--HHcCCCCCCCeEEECCEeCCCCCHHHHhc
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCL-TIEANEVVAIVGLSGSGKSTFVNL--LLRLYEPSDGQIYIDGFPLTDLDIRWLRE  156 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl-~i~~Ge~~~iiG~nGsGKSTLl~~--l~gl~~~~~G~I~i~g~~i~~~~~~~~r~  156 (325)
                      ++.+++.+..++   .++|+++|| .|++|++++|+||||||||||+++  ++|+++|++|.|+++|.+.. ......++
T Consensus        13 ~~~~~~~~~~~g---~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~-~~~~~~~~   88 (525)
T 1tf7_A           13 SEHQAIAKMRTM---IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETP-QDIIKNAR   88 (525)
T ss_dssp             -CCSSCCEECCC---CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCH-HHHHHHHG
T ss_pred             ccccccccccCC---chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCH-HHHHHHHH
Confidence            334445443332   469999999 999999999999999999999999  78999999999999998731 12234457


Q ss_pred             ceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 020527          157 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP  236 (325)
Q Consensus       157 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p  236 (325)
                      .+||++|++...     +|+.+..... .. ...++++..++.+++++.+         ..||||             +|
T Consensus        89 ~~g~~~q~~~~~-----~~l~~~~~~~-~~-~~~~~l~~~~l~~~~~~~~---------~~LS~g-------------~~  139 (525)
T 1tf7_A           89 SFGWDLAKLVDE-----GKLFILDASP-DP-EGQEVVGGFDLSALIERIN---------YAIQKY-------------RA  139 (525)
T ss_dssp             GGTCCHHHHHHT-----TSEEEEECCC-CS-SCCSCCSSHHHHHHHHHHH---------HHHHHH-------------TC
T ss_pred             HcCCChHHhhcc-----CcEEEEecCc-cc-chhhhhcccCHHHHHHHHH---------HHHHHc-------------CC
Confidence            899999986521     1111100000 00 0001111222233333222         235666             48


Q ss_pred             CEEEEeCCCC-----CCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHH---------Hh-cCEEEEEeC
Q 020527          237 AILLLDEATS-----ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI---------KA-VDRIVVIDD  294 (325)
Q Consensus       237 ~llllDEPts-----~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~---------~~-~d~v~~l~~  294 (325)
                      +++++||||+     +||+..++.+.++++.+++   .|+|+|++||+++.+         .. ||+|++|++
T Consensus       140 ~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~---~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~  209 (525)
T 1tf7_A          140 RRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQ---IGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN  209 (525)
T ss_dssp             SEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHH---HTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred             CEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHH---CCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence            8999999998     4699999999999999975   389999999999874         45 999999998

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.90  E-value=3.2e-23  Score=195.42  Aligned_cols=75  Identities=27%  Similarity=0.441  Sum_probs=67.4

Q ss_pred             CCCChHHHH------HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEE
Q 020527          216 DLLSGGQKQ------RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI  289 (325)
Q Consensus       216 ~~LSgGq~Q------Rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v  289 (325)
                      ..|||||||      |+++|||++.+|++|||||||++||+..+..+.+.|+++.+   .|.|||+||||.+....||++
T Consensus       247 ~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~---~~~~vi~~sH~~~~~~~~d~~  323 (339)
T 3qkt_A          247 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK---KIPQVILVSHDEELKDAADHV  323 (339)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG---GSSEEEEEESCGGGGGGCSEE
T ss_pred             HHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEEEChHHHHHhCCEE
Confidence            569999999      67888999999999999999999999999999999999864   367999999997766679999


Q ss_pred             EEEe
Q 020527          290 VVID  293 (325)
Q Consensus       290 ~~l~  293 (325)
                      ++|+
T Consensus       324 ~~l~  327 (339)
T 3qkt_A          324 IRIS  327 (339)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9985

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.90  E-value=2.2e-24  Score=199.09  Aligned_cols=183  Identities=16%  Similarity=0.149  Sum_probs=120.5

Q ss_pred             CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCC-eEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHH
Q 020527           96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS  174 (325)
Q Consensus        96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G-~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~e  174 (325)
                      ++|+++++.+++|++++|+||||||||||++.|+|...|++| .|.+.+.+.   +..++++++..++|+..+   ++.+
T Consensus        23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~---~~~~~~~r~~~~~~~~~~---~~~~   96 (296)
T 1cr0_A           23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE---SVEETAEDLIGLHNRVRL---RQSD   96 (296)
T ss_dssp             TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS---CHHHHHHHHHHHHTTCCG---GGCH
T ss_pred             HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC---CHHHHHHHHHHHHcCCCh---hhcc
Confidence            489999999999999999999999999999999999999888 776654332   344555555444444322   2233


Q ss_pred             HHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHH-HHHHHHHHHHcCCCCEEEEeCCCC---C---
Q 020527          175 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ-KQRIAIARAILRDPAILLLDEATS---A---  247 (325)
Q Consensus       175 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq-~QRv~iAral~~~p~llllDEPts---~---  247 (325)
                      ++..+.   ...+...+.     +.++++..+.....  ....+|.+| +||+. |+++..+|+++|+||||+   +   
T Consensus        97 ~l~~~~---~~~~~~~~~-----~~~~l~~~~l~i~~--~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~  165 (296)
T 1cr0_A           97 SLKREI---IENGKFDQW-----FDELFGNDTFHLYD--SFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGE  165 (296)
T ss_dssp             HHHHHH---HHHTHHHHH-----HHHHHSSSCEEEEC--CCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--------
T ss_pred             ccccCC---CCHHHHHHH-----HHHHhccCCEEEEC--CCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCC
Confidence            333210   001111111     11222221211110  113589999 67777 999999999999999999   5   


Q ss_pred             CCH-HHHHHHHHHHHHhhccCCCCeEEEEEecCc--h--------------------HHH-hcCEEEEEeCCEE
Q 020527          248 LDS-ESEHYVKGVLHALRNDCKTKRTVIVIAHRL--S--------------------TIK-AVDRIVVIDDGRI  297 (325)
Q Consensus       248 LD~-~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~--~--------------------~~~-~~d~v~~l~~G~i  297 (325)
                      +|. .....+.+.|++++++  .|+|||++||+.  +                    .+. .||+|++|++|+.
T Consensus       166 ~d~~~~~~~i~~~L~~la~~--~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~  237 (296)
T 1cr0_A          166 SDERKMIDNLMTKLKGFAKS--TGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ  237 (296)
T ss_dssp             ---CHHHHHHHHHHHHHHHH--HCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred             CCHHHHHHHHHHHHHHHHHH--hCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence            455 6667788888888753  488999999995  4                    554 4999999998875

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=99.90  E-value=1.4e-23  Score=208.44  Aligned_cols=76  Identities=18%  Similarity=0.299  Sum_probs=70.3

Q ss_pred             CCC-ChHHHHHHHHHHHHcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEE
Q 020527          216 DLL-SGGQKQRIAIARAILRDP--AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI  292 (325)
Q Consensus       216 ~~L-SgGq~QRv~iAral~~~p--~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l  292 (325)
                      ..| ||||+|||+|||||+.+|  ++|||||||+|||+.+...+.+.|+++++    |.|||+|||+++.+..||++++|
T Consensus       395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~----~~~vi~itH~~~~~~~~d~~~~~  470 (517)
T 4ad8_A          395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD----TRQVLVVTHLAQIAARAHHHYKV  470 (517)
T ss_dssp             SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH----HSEEEEECCCHHHHHHSSEEEEE
T ss_pred             HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC----CCEEEEEecCHHHHHhCCEEEEE
Confidence            346 999999999999999999  99999999999999999999999999963    67999999999988889999999


Q ss_pred             eCC
Q 020527          293 DDG  295 (325)
Q Consensus       293 ~~G  295 (325)
                      +++
T Consensus       471 ~~~  473 (517)
T 4ad8_A          471 EKQ  473 (517)
T ss_dssp             ECC
T ss_pred             ecc
Confidence            654

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.89  E-value=1.7e-23  Score=218.41  Aligned_cols=164  Identities=25%  Similarity=0.321  Sum_probs=119.9

Q ss_pred             HHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCC----CC--CCCHHHHHHHHHHcC
Q 020527          124 FVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC----PK--DVKNEDIEWAAKQAY  197 (325)
Q Consensus       124 Ll~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~----~~--~~~~~~~~~~~~~~~  197 (325)
                      ...|..+.+.|..|+|.|+|+++..+                  ..+++.+++.|..    ..  ...........+  .
T Consensus       384 C~~C~g~rl~~~~~~V~i~G~~i~~~------------------~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~--~  443 (916)
T 3pih_A          384 CSVCGGRRLNREALSVKINGLNIHEF------------------TELSISEELEFLKNLNLTEREREIVGELLKEIE--K  443 (916)
T ss_dssp             CTTTCSCCBCTTGGGEEETTEEHHHH------------------HHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHH--H
T ss_pred             chhcccccCChHhcCcEECCccHHHh------------------hhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHH--H
Confidence            44555667889999999999987432                  1234444443210    00  000111111111  1


Q ss_pred             HHHHHHhCCCCccc-ccCCCCCChHHHHHHHHHHHHcCCCC--EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEE
Q 020527          198 VHEFILSLPCGYET-LVDDDLLSGGQKQRIAIARAILRDPA--ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI  274 (325)
Q Consensus       198 ~~~~~~~~~~~~~~-~~~~~~LSgGq~QRv~iAral~~~p~--llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi  274 (325)
                      ..+++..+..++.. .....+|||||||||+|||||+++|+  +|||||||++||+.....++++|+++++   .|.|||
T Consensus       444 ~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~---~G~Tvi  520 (916)
T 3pih_A          444 RLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRD---LGNTVI  520 (916)
T ss_dssp             HHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTT---TTCEEE
T ss_pred             HHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHh---cCCEEE
Confidence            22455665554332 33346899999999999999999887  9999999999999999999999999964   489999


Q ss_pred             EEecCchHHHhcCEEEEE------eCCEEEEEcChHHHhhcC
Q 020527          275 VIAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHKG  310 (325)
Q Consensus       275 ~vtH~~~~~~~~d~v~~l------~~G~i~~~g~~~~l~~~~  310 (325)
                      +||||++++..||+|++|      ++|++++.|+++++++..
T Consensus       521 vVtHd~~~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~~~  562 (916)
T 3pih_A          521 VVEHDEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLKNP  562 (916)
T ss_dssp             EECCCHHHHHTCSEEEEEESSSGGGCSEEEEEECHHHHHHSC
T ss_pred             EEeCCHHHHHhCCEEEEEcCCcccCCCEEEEeechhhhhcCc
Confidence            999999998889999999      899999999999998753

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=99.88  E-value=2.1e-22  Score=210.83  Aligned_cols=168  Identities=13%  Similarity=0.151  Sum_probs=119.3

Q ss_pred             cEEEEEEEEECCCC--CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHH--------HcCCCCCCCeEEECCEeCCC
Q 020527           79 HVQFVNISFHYPSR--PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLL--------LRLYEPSDGQIYIDGFPLTD  148 (325)
Q Consensus        79 ~i~~~~v~~~y~~~--~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l--------~gl~~~~~G~I~i~g~~i~~  148 (325)
                      .+.+++....+-..  ....+++|++|++++|++++|+||||||||||||++        .|.+-|.++..         
T Consensus       631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~---------  701 (934)
T 3thx_A          631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE---------  701 (934)
T ss_dssp             EEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE---------
T ss_pred             ceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc---------
Confidence            47888876544221  124689999999999999999999999999999999        44433332211         


Q ss_pred             CCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 020527          149 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI  228 (325)
Q Consensus       149 ~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i  228 (325)
                               ++++.   .+|.       .++                  +.+.+.            ..+|+|++++..+
T Consensus       702 ---------~~~~d---~i~~-------~ig------------------~~d~l~------------~~lStf~~e~~~~  732 (934)
T 3thx_A          702 ---------VSIVD---CILA-------RVG------------------AGDSQL------------KGVSTFMAEMLET  732 (934)
T ss_dssp             ---------EECCS---EEEE-------ECC---------------------------------------CHHHHHHHHH
T ss_pred             ---------chHHH---HHHH-------hcC------------------chhhHH------------HhHhhhHHHHHHH
Confidence                     11000   0110       011                  001010            2378999888888


Q ss_pred             HHHH--cCCCCEEEEeCCCCCCCHHHHHHH-HHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHH
Q 020527          229 ARAI--LRDPAILLLDEATSALDSESEHYV-KGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAE  305 (325)
Q Consensus       229 Aral--~~~p~llllDEPts~LD~~~~~~i-~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~  305 (325)
                      |+++  +.+|+++||||||+|+|+.....+ ..+++.+.++  .|+++|++||+.+....||++..+++|++...+++++
T Consensus       733 a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~--~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~  810 (934)
T 3thx_A          733 ASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATK--IGAFCMFATHFHELTALANQIPTVNNLHVTALTTEET  810 (934)
T ss_dssp             HHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHT--TCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTE
T ss_pred             HHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc--CCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCc
Confidence            8888  999999999999999999988777 6667777642  4889999999988888899999999999987766655


Q ss_pred             H
Q 020527          306 L  306 (325)
Q Consensus       306 l  306 (325)
                      +
T Consensus       811 l  811 (934)
T 3thx_A          811 L  811 (934)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.87  E-value=6e-23  Score=204.29  Aligned_cols=153  Identities=17%  Similarity=0.152  Sum_probs=113.2

Q ss_pred             eEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHh-cCC
Q 020527          102 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIM-YGC  180 (325)
Q Consensus       102 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~-~~~  180 (325)
                      +..|++|++++|+||||||||||++.++|+.+|. |+                 +.+.|++|++.   ..+.++.. ++.
T Consensus       275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~~~ee~~---~~l~~~~~~~g~  333 (525)
T 1tf7_A          275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILFAYEESR---AQLLRNAYSWGM  333 (525)
T ss_dssp             TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEEESSSCH---HHHHHHHHTTSC
T ss_pred             CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEEEEeCCH---HHHHHHHHHcCC
Confidence            3478999999999999999999999999998874 53                 11455566542   13333331 221


Q ss_pred             CCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH-----HHHH
Q 020527          181 PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE-----SEHY  255 (325)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~-----~~~~  255 (325)
                          ..+   +. ...++         -......+..|||||+||+++|+++..+|+++|+| ||++||+.     .+..
T Consensus       334 ----~~~---~~-~~~g~---------~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~  395 (525)
T 1tf7_A          334 ----DFE---EM-ERQNL---------LKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQF  395 (525)
T ss_dssp             ----CHH---HH-HHTTS---------EEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHH
T ss_pred             ----CHH---HH-HhCCC---------EEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHH
Confidence                111   11 01110         00011123569999999999999999999999999 99999999     8999


Q ss_pred             HHHHHHHhhccCCCCeEEEEEecCc----------hHHHh-cCEEEEEeCCE
Q 020527          256 VKGVLHALRNDCKTKRTVIVIAHRL----------STIKA-VDRIVVIDDGR  296 (325)
Q Consensus       256 i~~~l~~l~~~~~~g~tvi~vtH~~----------~~~~~-~d~v~~l~~G~  296 (325)
                      +.++++.+++   .|+|+|++||+.          ..+.. ||+|++|++|+
T Consensus       396 i~~ll~~l~~---~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge  444 (525)
T 1tf7_A          396 VIGVTGYAKQ---EEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE  444 (525)
T ss_dssp             HHHHHHHHHH---TTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred             HHHHHHHHHh---CCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence            9999998865   489999999998          66654 99999999886

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=99.87  E-value=1.5e-23  Score=190.92  Aligned_cols=130  Identities=25%  Similarity=0.337  Sum_probs=97.0

Q ss_pred             CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCC-CCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHH
Q 020527           96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS  174 (325)
Q Consensus        96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~-~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~e  174 (325)
                      ++|+++|  +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++....    +..+++++|.          
T Consensus        15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~v~q~----------   78 (261)
T 2eyu_A           15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSIVNQR----------   78 (261)
T ss_dssp             THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSEEEEE----------
T ss_pred             HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcceeeeHH----------
Confidence            3899999  9999999999999999999999999999998 999999987653221    1122233321          


Q ss_pred             HHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHH
Q 020527          175 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH  254 (325)
Q Consensus       175 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~  254 (325)
                                          ..           +...    ..|      |++|||||..+|+++++||||   |+.+..
T Consensus        79 --------------------~~-----------gl~~----~~l------~~~la~aL~~~p~illlDEp~---D~~~~~  114 (261)
T 2eyu_A           79 --------------------EV-----------GEDT----KSF------ADALRAALREDPDVIFVGEMR---DLETVE  114 (261)
T ss_dssp             --------------------EB-----------TTTB----SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHH
T ss_pred             --------------------Hh-----------CCCH----HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHH
Confidence                                00           1000    112      899999999999999999999   998865


Q ss_pred             HHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEE
Q 020527          255 YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI  292 (325)
Q Consensus       255 ~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l  292 (325)
                      .+   ++.. +   .|.+|++++|+.+....|||+++|
T Consensus       115 ~~---l~~~-~---~g~~vl~t~H~~~~~~~~dri~~l  145 (261)
T 2eyu_A          115 TA---LRAA-E---TGHLVFGTLHTNTAIDTIHRIVDI  145 (261)
T ss_dssp             HH---HHHH-H---TTCEEEEEECCSSHHHHHHHHHHT
T ss_pred             HH---HHHH-c---cCCEEEEEeCcchHHHHHHHHhhh
Confidence            43   3333 2   378999999998865567776544

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=99.87  E-value=2.7e-23  Score=183.62  Aligned_cols=149  Identities=22%  Similarity=0.215  Sum_probs=102.0

Q ss_pred             EeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-------CCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHH
Q 020527          104 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-------SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI  176 (325)
Q Consensus       104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-------~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl  176 (325)
                      -|++|++++|+||||||||||+++|+|++.+       ..|.+++++.+.  ..    ++++++++|...+++.++.+|+
T Consensus        21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~   94 (231)
T 4a74_A           21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI   94 (231)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence            6899999999999999999999999996554       444788877542  11    2346777888777766899998


Q ss_pred             hcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH-------cCCCCEEEEeCCCCCCC
Q 020527          177 MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI-------LRDPAILLLDEATSALD  249 (325)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral-------~~~p~llllDEPts~LD  249 (325)
                      .+....  ....                                 +++.+..++++       ..+|+++++||||+.+|
T Consensus        95 ~~~~~~--~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~  139 (231)
T 4a74_A           95 YVARAF--NSNH---------------------------------QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR  139 (231)
T ss_dssp             EEEECC--SHHH---------------------------------HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHH
T ss_pred             EEEecC--ChHH---------------------------------HHHHHHHHHHHHHHhcccCCceeEEEECChHHHhc
Confidence            764211  1111                                 11112222222       45999999999999999


Q ss_pred             HHH------------HHHHHHHHHHhhccCCCCeEEEEEecCch----HHHh-cCEEEEEeCC
Q 020527          250 SES------------EHYVKGVLHALRNDCKTKRTVIVIAHRLS----TIKA-VDRIVVIDDG  295 (325)
Q Consensus       250 ~~~------------~~~i~~~l~~l~~~~~~g~tvi~vtH~~~----~~~~-~d~v~~l~~G  295 (325)
                      +..            ...+++.|.++.++  .|+|||++||...    .+.. ||++++|++|
T Consensus       140 ~~~~~~~~~~~r~~~~~~~~~~l~~~~~~--~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~  200 (231)
T 4a74_A          140 SEYIGRGALAERQQKLAKHLADLHRLANL--YDIAVFVTNQVQANGGHILAHSATLRVYLRKG  200 (231)
T ss_dssp             HHSCSTTHHHHHHHHHHHHHHHHHHHHHH--HTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred             cccCCCcchhHHHHHHHHHHHHHHHHHHH--CCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence            842            22566777776543  4899999999554    4765 9999999875

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=99.86  E-value=1.5e-22  Score=208.48  Aligned_cols=147  Identities=19%  Similarity=0.185  Sum_probs=110.0

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC-CCCCeEEECCEeCCCCCHHHHhcc
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-PSDGQIYIDGFPLTDLDIRWLREK  157 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~-~~~G~I~i~g~~i~~~~~~~~r~~  157 (325)
                      .+++++.....-...+..+++|+||+   |++++|+||||||||||+|+++|+.. ++.|.+.      ..     .+..
T Consensus       550 ~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v------pa-----~~~~  615 (765)
T 1ewq_A          550 RLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV------PA-----EEAH  615 (765)
T ss_dssp             SEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB------SS-----SEEE
T ss_pred             cEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee------eh-----hccc
Confidence            58888874332100124699999999   99999999999999999999999974 6778642      11     1346


Q ss_pred             eEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH--cC
Q 020527          158 IGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI--LR  234 (325)
Q Consensus       158 i~~v~Q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral--~~  234 (325)
                      +++++|   +| ..++.||+..                                      .+|+|++|++.+|+++  +.
T Consensus       616 i~~v~~---i~~~~~~~d~l~~--------------------------------------g~S~~~~e~~~la~il~~a~  654 (765)
T 1ewq_A          616 LPLFDG---IYTRIGASDDLAG--------------------------------------GKSTFMVEMEEVALILKEAT  654 (765)
T ss_dssp             ECCCSE---EEEECCC--------------------------------------------CCSHHHHHHHHHHHHHHHCC
T ss_pred             eeeHHH---hhccCCHHHHHHh--------------------------------------cccHHHHHHHHHHHHHHhcc
Confidence            888877   45 4566666532                                      2689999999999999  99


Q ss_pred             CCCEEEEeCC---CCCCCHHHH-HHHHHHHHHhhccCCCCeEEEEEecCchHHHhc
Q 020527          235 DPAILLLDEA---TSALDSESE-HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV  286 (325)
Q Consensus       235 ~p~llllDEP---ts~LD~~~~-~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~  286 (325)
                      +|+++|||||   |++||+.+. ..+.+.+.+      .|.++|++||+.+....|
T Consensus       655 ~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~------~g~~vl~~TH~~~l~~~~  704 (765)
T 1ewq_A          655 ENSLVLLDEVGRGTSSLDGVAIATAVAEALHE------RRAYTLFATHYFELTALG  704 (765)
T ss_dssp             TTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH------HTCEEEEECCCHHHHTCC
T ss_pred             CCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh------CCCEEEEEeCCHHHHHhh
Confidence            9999999999   999999875 457777765      267999999998876544

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.85  E-value=7.2e-22  Score=205.36  Aligned_cols=136  Identities=21%  Similarity=0.354  Sum_probs=105.4

Q ss_pred             ccccHHHHHhcCCCCCCCHH-------HHHHHHHHcCHHHHHHhCCCCcc-cccCCCCCChHHHHHHHHHHHHcCCC--C
Q 020527          168 LQMDIKSNIMYGCPKDVKNE-------DIEWAAKQAYVHEFILSLPCGYE-TLVDDDLLSGGQKQRIAIARAILRDP--A  237 (325)
Q Consensus       168 ~~~tv~enl~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~LSgGq~QRv~iAral~~~p--~  237 (325)
                      ..+||.|++.|.........       .+.+..++  + +++..+..++. ..+...+|||||+|||+||++|..+|  +
T Consensus       450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~R--l-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~  526 (972)
T 2r6f_A          450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDR--L-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGV  526 (972)
T ss_dssp             HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHH--H-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSC
T ss_pred             hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH--H-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCC
Confidence            36899999887421112221       11222222  2 34555555543 23344689999999999999999985  9


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEE------eCCEEEEEcChHHHhhc
Q 020527          238 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHK  309 (325)
Q Consensus       238 llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l------~~G~i~~~g~~~~l~~~  309 (325)
                      +|||||||++||+...+.+++.|+++++   .|.|||+|+||++++..||+|++|      ++|++++.|+++++...
T Consensus       527 llILDEPTagLdp~~~~~L~~~L~~Lr~---~G~TVIvVeHdl~~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~~  601 (972)
T 2r6f_A          527 LYVLDEPSIGLHQRDNDRLIATLKSMRD---LGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMND  601 (972)
T ss_dssp             EEEEECTTTTCCGGGHHHHHHHHHHHHT---TTCEEEEECCCHHHHHSCSEEEEECSSSGGGCCSEEEEECTTTTTTC
T ss_pred             EEEEeCcccCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCHHHHHhCCEEEEeCCCccCCCCEEEEecCHHHHHhh
Confidence            9999999999999999999999999964   589999999999998889999999      79999999999998764

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.85  E-value=3.5e-23  Score=186.26  Aligned_cols=169  Identities=12%  Similarity=0.172  Sum_probs=103.4

Q ss_pred             CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHH
Q 020527           95 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIK  173 (325)
Q Consensus        95 ~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~  173 (325)
                      .++|+|+||++++|+++||+||||||||||+++|+|++    |.+.++          ..++.++|++|+. ++ ..|+.
T Consensus        12 ~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~-~~~~l~~~   76 (245)
T 2jeo_A           12 DLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDR-FYKVLTAE   76 (245)
T ss_dssp             -----------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGG-GBCCCCHH
T ss_pred             ceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCc-CccccCHh
Confidence            46999999999999999999999999999999999976    555544          2467899999996 44 57999


Q ss_pred             HHHhcCCCC-CC-CHH--HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCC
Q 020527          174 SNIMYGCPK-DV-KNE--DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD  249 (325)
Q Consensus       174 enl~~~~~~-~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD  249 (325)
                      +|+.+.... .. ..+  ......+      .++.+.....  .....||+||+||+++ ++++.+|+++|+|||....|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~------~L~~l~~~~~--~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~  147 (245)
T 2jeo_A           77 QKAKALKGQYNFDHPDAFDNDLMHR------TLKNIVEGKT--VEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYS  147 (245)
T ss_dssp             HHHHHHTTCCCTTSGGGBCHHHHHH------HHHHHHTTCC--EEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTS
T ss_pred             HhhhhhccCCCCCCcccccHHHHHH------HHHHHHCCCC--eecccccccccCccCc-eEEecCCCEEEEeCcccccc
Confidence            987643211 00 010  0111111      1111111111  1125699999999988 68899999999999988887


Q ss_pred             HHHHHHHHHHHHHhhccCCCCeEEEEEecCchHH-Hh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527          250 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KA-VDRIVVIDDGRIIEVGNHAELLH  308 (325)
Q Consensus       250 ~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~-~~-~d~v~~l~~G~i~~~g~~~~l~~  308 (325)
                      ..        +.++     .+.+|+++||+...+ +. ++++   ++|+     +++++..
T Consensus       148 ~~--------l~~~-----~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~  187 (245)
T 2jeo_A          148 QE--------IRDM-----FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILT  187 (245)
T ss_dssp             HH--------HHTT-----CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHH
T ss_pred             HH--------HHHh-----cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHH
Confidence            63        2222     267999999974444 44 4444   6664     5666653

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.85  E-value=1.7e-23  Score=194.29  Aligned_cols=164  Identities=16%  Similarity=0.118  Sum_probs=83.9

Q ss_pred             EEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcC-CCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 020527           83 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL-YEPSDGQIYIDGFPLTDLDIRWLREKIGFV  161 (325)
Q Consensus        83 ~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl-~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v  161 (325)
                      +||+++|+++   .++++++|+|      +|+||||||||||+++|+|. ..|++| |.++|.++.. . .. .+.++++
T Consensus         2 ~~l~~~~~~~---~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t-~~-~~~~~~~   68 (301)
T 2qnr_A            2 SNLPNQVHRK---SVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-T-VQ-IEASTVE   68 (301)
T ss_dssp             -------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEE
T ss_pred             CCCcceECCE---EEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-c-ce-EeeEEEE
Confidence            4788999753   6999999998      99999999999999999998 889999 8888877643 1 11 3568999


Q ss_pred             ccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEE
Q 020527          162 GQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILL  240 (325)
Q Consensus       162 ~Q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~lll  240 (325)
                      +|...++ ..|++|+..++.... ..+......+.  +.+..+...         .++|||||||+.+|||++    +++
T Consensus        69 ~q~~~~~~~ltv~Dt~g~~~~~~-~~e~~~~l~~~--l~~~~~~~~---------~~~sgg~rqrv~~ara~~----ll~  132 (301)
T 2qnr_A           69 IEERGVKLRLTVVDTPGYGDAIN-CRDCFKTIISY--IDEQFERYL---------HDESGLNRRHIIDNRVHC----CFY  132 (301)
T ss_dssp             EC---CCEEEEEEEEC------------CTTHHHH--HHHHHHHHH---------HHHTSSCCTTCCCCCCCE----EEE
T ss_pred             ecCCCcccCcchhhhhhhhhhcC-cHHHHHHHHHH--HHHHHHHHH---------HHhCHHhhhhhhhhhhhh----eee
Confidence            9987765 689999887652210 00000001110  111111111         348999999999999986    999


Q ss_pred             EeCCCCC-CCHHHHHHHHHHHHHhhccCCCCeEEEEEecCch
Q 020527          241 LDEATSA-LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS  281 (325)
Q Consensus       241 lDEPts~-LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~  281 (325)
                      +||||++ ||+...    +.++++.+  ..+.++|+++||+.
T Consensus       133 ldePt~~~Ld~~~~----~~l~~l~~--~~~iilV~~K~Dl~  168 (301)
T 2qnr_A          133 FISPFGHGLKPLDV----AFMKAIHN--KVNIVPVIAKADTL  168 (301)
T ss_dssp             EECSSSSSCCHHHH----HHHHHHTT--TSCEEEEECCGGGS
T ss_pred             eecCcccCCCHHHH----HHHHHHHh--cCCEEEEEEeCCCC
Confidence            9999985 999863    55666643  24789999999974

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=99.85  E-value=9e-22  Score=191.12  Aligned_cols=74  Identities=27%  Similarity=0.372  Sum_probs=67.3

Q ss_pred             CCChHHHHHHHHHHHHc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEE
Q 020527          217 LLSGGQKQRIAIARAIL----RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI  292 (325)
Q Consensus       217 ~LSgGq~QRv~iAral~----~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l  292 (325)
                      .||||||||++||++|+    .+|+++||||||++||+..+..+.+.+.++.+   .+.++|++||+...+..||+++++
T Consensus       333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~---~~~~~ii~th~~~~~~~~d~~~~~  409 (430)
T 1w1w_A          333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN---PDLQFIVISLKNTMFEKSDALVGV  409 (430)
T ss_dssp             GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB---TTBEEEEECSCHHHHTTCSEEEEE
T ss_pred             cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc---CCCEEEEEECCHHHHHhCCEEEEE
Confidence            39999999999999999    68999999999999999999999999998853   367999999998777779999988


Q ss_pred             e
Q 020527          293 D  293 (325)
Q Consensus       293 ~  293 (325)
                      .
T Consensus       410 ~  410 (430)
T 1w1w_A          410 Y  410 (430)
T ss_dssp             E
T ss_pred             E
Confidence            6

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.85  E-value=2.4e-22  Score=208.10  Aligned_cols=181  Identities=20%  Similarity=0.267  Sum_probs=128.6

Q ss_pred             CCCChHHHHHHHHHcC---------CCCCCCeEEECCEeCCC---CCHHHHhcceEEEccCCcCccccHHHHHhcCCCCC
Q 020527          116 LSGSGKSTFVNLLLRL---------YEPSDGQIYIDGFPLTD---LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD  183 (325)
Q Consensus       116 ~nGsGKSTLl~~l~gl---------~~~~~G~I~i~g~~i~~---~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~  183 (325)
                      .+..||+++.+.+...         +.|.+|+|.++|+++.+   ++..+...-+.-+||++.... +  +...+.    
T Consensus       270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~-~--~~~~~~----  342 (842)
T 2vf7_A          270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGH-A--ERVKNR----  342 (842)
T ss_dssp             CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCS-T--TSSSSC----
T ss_pred             cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhcc-c--chhhcc----
Confidence            4667999999988774         34678999999998865   333333222333333332111 1  111121    


Q ss_pred             CCHHHHH-----HHHHHcCHHHHHHhCCCCcc-cccCCCCCChHHHHHHHHHHHHcCCC--CEEEEeCCCCCCCHHHHHH
Q 020527          184 VKNEDIE-----WAAKQAYVHEFILSLPCGYE-TLVDDDLLSGGQKQRIAIARAILRDP--AILLLDEATSALDSESEHY  255 (325)
Q Consensus       184 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~LSgGq~QRv~iAral~~~p--~llllDEPts~LD~~~~~~  255 (325)
                      .....+.     +..++  +. .+..+..++. ......+|||||||||+||++|..+|  ++|||||||++||+...+.
T Consensus       343 ~~~~~i~~~i~~ei~~r--l~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~  419 (842)
T 2vf7_A          343 PEQAIALQRMAADLVKR--LD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEA  419 (842)
T ss_dssp             SSHHHHHHHHHHHHHHH--HH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHH
T ss_pred             hhhHHHHHHHHHHHHHH--HH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHH
Confidence            1111111     12222  22 4555555533 23334689999999999999999999  5999999999999999999


Q ss_pred             HHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEE------eCCEEEEEcChHHHhhc
Q 020527          256 VKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHK  309 (325)
Q Consensus       256 i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l------~~G~i~~~g~~~~l~~~  309 (325)
                      +.++++++++   .|.|||+|+||++++..||+|++|      ++|++++.|+++++...
T Consensus       420 L~~~l~~L~~---~G~TVIvVeHdl~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~~  476 (842)
T 2vf7_A          420 LLSALENLKR---GGNSLFVVEHDLDVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKHV  476 (842)
T ss_dssp             HHHHHHHHHT---TTCEEEEECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECGGGGGGC
T ss_pred             HHHHHHHHHH---cCCEEEEEcCCHHHHHhCCEEEEeCCCcccCCCEEEEecCHHHHHhc
Confidence            9999999974   488999999999988779999999      79999999999998765

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=99.84  E-value=6.1e-21  Score=159.08  Aligned_cols=80  Identities=25%  Similarity=0.411  Sum_probs=70.3

Q ss_pred             CCCCChHHHHHHHHH------HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCE
Q 020527          215 DDLLSGGQKQRIAIA------RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDR  288 (325)
Q Consensus       215 ~~~LSgGq~QRv~iA------ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~  288 (325)
                      ..+||||||||++||      |||+.+|+++||||||++||+.++..+.+.+.++.+   .|.|||++|||++....||+
T Consensus        55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiiivsH~~~~~~~~d~  131 (148)
T 1f2t_B           55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK---KIPQVILVSHDEELKDAADH  131 (148)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGG---GSSEEEEEESCGGGGGGCSE
T ss_pred             hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHc---cCCEEEEEEChHHHHHhCCE
Confidence            357999999999876      999999999999999999999999999999999864   37899999999965566999


Q ss_pred             EEEE--eCCEE
Q 020527          289 IVVI--DDGRI  297 (325)
Q Consensus       289 v~~l--~~G~i  297 (325)
                      +++|  ++|..
T Consensus       132 ii~l~~~~g~s  142 (148)
T 1f2t_B          132 VIRISLENGSS  142 (148)
T ss_dssp             EEEEEEETTEE
T ss_pred             EEEEEcCCCeE
Confidence            9999  46643

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.84  E-value=4.4e-24  Score=215.77  Aligned_cols=191  Identities=16%  Similarity=0.243  Sum_probs=120.8

Q ss_pred             cEEEEEEEEECCCCCCCCceeee----------eEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-CCCeEEECCEeCC
Q 020527           79 HVQFVNISFHYPSRPTVPILNHV----------CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYIDGFPLT  147 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~i----------sl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-~~G~I~i~g~~i~  147 (325)
                      .++++|+++.|+.+ .+++|+.+          +++++.   ++|+||||||||||+++|+|++.| ++|.|+++|.++.
T Consensus        10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~   85 (608)
T 3szr_A           10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK   85 (608)
T ss_dssp             ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred             hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence            47899999999642 12355544          366664   999999999999999999999988 7999999999862


Q ss_pred             --CC-CHHHHhcceEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHH
Q 020527          148 --DL-DIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK  223 (325)
Q Consensus       148 --~~-~~~~~r~~i~~v~Q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~  223 (325)
                        .. ....+++.++|+||++.++ ..||++|+.+..             ..      .....         ..+|   +
T Consensus        86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~-------------~~------~~~~~---------~~~s---~  134 (608)
T 3szr_A           86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ-------------NA------IAGEG---------MGIS---H  134 (608)
T ss_dssp             EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH-------------HH------HHCSS---------SCCC---S
T ss_pred             EecCCccccceeEEeeecccccCCCHHHHHHHHHHHH-------------HH------hcCCc---------cccc---h
Confidence              11 1235678899999999887 579999986520             00      00000         0112   2


Q ss_pred             HHHHHHHHHcCCCCEEEEeCC------CCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHH--------Hh----
Q 020527          224 QRIAIARAILRDPAILLLDEA------TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI--------KA----  285 (325)
Q Consensus       224 QRv~iAral~~~p~llllDEP------ts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~--------~~----  285 (325)
                      +++.++.+....|+++|+|||      |++||+..+.++.+++.++.++ ..+.+++++||+++.+        ..    
T Consensus       135 ~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~-~~~iil~vvt~~~d~a~~~~l~la~~v~~~  213 (608)
T 3szr_A          135 ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQR-QETISLVVVPSNVDIATTEALSMAQEVDPE  213 (608)
T ss_dssp             CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTS-SSCCEEEEEESSSCTTTCHHHHHHHHHCSS
T ss_pred             HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhc-CCCCceEEEeccchhccHHHHHHHHHHhhc
Confidence            334444455668999999999      9999999999999999997543 3578999999998632        22    


Q ss_pred             -cCEEEEEeCCEEEEEcChHH
Q 020527          286 -VDRIVVIDDGRIIEVGNHAE  305 (325)
Q Consensus       286 -~d~v~~l~~G~i~~~g~~~~  305 (325)
                       +..|.++.++.++..|+.++
T Consensus       214 g~rtI~VlTK~Dlv~~g~~~~  234 (608)
T 3szr_A          214 GDRTIGILTKPDLVDKGTEDK  234 (608)
T ss_dssp             CCSEEEEEECGGGSSSSSTTC
T ss_pred             CCceEEEecchhhcCcccHHH
Confidence             24689999988877776543

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=99.84  E-value=1.9e-23  Score=181.25  Aligned_cols=170  Identities=18%  Similarity=0.234  Sum_probs=112.2

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHH
Q 020527          108 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNE  187 (325)
Q Consensus       108 Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~  187 (325)
                      |++++|+||||||||||+++|+|+++ ++| |.++|.+..++  ..+++++||++|+..   ++ ++++..- .....  
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~--~~~~~~ig~~~~~~~---g~-~~~l~~~-~~~~~--   69 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEV--RQGGRRIGFDVVTLS---GT-RGPLSRV-GLEPP--   69 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEE--ETTSSEEEEEEEETT---SC-EEEEEEC-CCCCC--
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchh--HhhhceEEEEEEecc---cc-eehhhcc-cccCC--
Confidence            78999999999999999999999999 999 99999887543  345788999999862   11 1122110 00000  


Q ss_pred             HHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHH-HHHH---HHcCCCCEEEEeC--CCCCCCHHHHHHHHHH
Q 020527          188 DIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRI-AIAR---AILRDPAILLLDE--ATSALDSESEHYVKGV  259 (325)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq~QRv-~iAr---al~~~p~llllDE--Pts~LD~~~~~~i~~~  259 (325)
                                        .......++  ...+|+|||+++ ++++   |++.+|+++|+||  |+..+|+...+.+.++
T Consensus        70 ------------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~  131 (189)
T 2i3b_A           70 ------------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQT  131 (189)
T ss_dssp             ------------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHH
T ss_pred             ------------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHH
Confidence                              000000111  135899999998 5555   6899999999999  8999999876666666


Q ss_pred             HHHhhccCCCCeEEEE----EecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHH
Q 020527          260 LHALRNDCKTKRTVIV----IAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK  318 (325)
Q Consensus       260 l~~l~~~~~~g~tvi~----vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~  318 (325)
                      +..       ..++|+    ++||.+ ...+|+|..+++|+|+.....    +.+.++.++++
T Consensus       132 l~~-------~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~~~----nr~~~~~~i~~  182 (189)
T 2i3b_A          132 LST-------PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVTKE----NRNHLLPDIVT  182 (189)
T ss_dssp             HHC-------SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECCSS----SGGGHHHHHHH
T ss_pred             HhC-------CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeChH----hHHHHHHHHHH
Confidence            542       224443    349875 334666666688888764321    12344555544

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=99.84  E-value=1.1e-21  Score=205.01  Aligned_cols=151  Identities=15%  Similarity=0.194  Sum_probs=104.3

Q ss_pred             cEEEEEEEEECC----CCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHH
Q 020527           79 HVQFVNISFHYP----SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL  154 (325)
Q Consensus        79 ~i~~~~v~~~y~----~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~  154 (325)
                      .+.+++.....=    ......+++|+||++++|++++|+||||||||||||+++++.-..                   
T Consensus       640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a-------------------  700 (918)
T 3thx_B          640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA-------------------  700 (918)
T ss_dssp             EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH-------------------
T ss_pred             cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh-------------------
Confidence            477777654320    111246999999999999999999999999999999998642110                   


Q ss_pred             hcceEEEccCC-------cCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHH
Q 020527          155 REKIGFVGQEP-------QLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI  226 (325)
Q Consensus       155 r~~i~~v~Q~~-------~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv  226 (325)
                       +.-.++|+..       .+| ...+.+++                          ..         +...+|+|++|++
T Consensus       701 -q~g~~vpa~~~~i~~~d~i~~~ig~~d~l--------------------------~~---------~~stfs~em~~~~  744 (918)
T 3thx_B          701 -QIGSYVPAEEATIGIVDGIFTRMGAADNI--------------------------YK---------GRSTFMEELTDTA  744 (918)
T ss_dssp             -HHTCCBSSSEEEEECCSEEEEEC---------------------------------------------CCHHHHHHHHH
T ss_pred             -hcCccccchhhhhhHHHHHHHhCChHHHH--------------------------HH---------hHHHhhHHHHHHH
Confidence             0011222221       111 11111111                          11         0145899999999


Q ss_pred             HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHH-HHHHHhhccCCCCeEEEEEecCchHHHhcC
Q 020527          227 AIARAILRDPAILLLDEATSALDSESEHYVK-GVLHALRNDCKTKRTVIVIAHRLSTIKAVD  287 (325)
Q Consensus       227 ~iAral~~~p~llllDEPts~LD~~~~~~i~-~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d  287 (325)
                      .++++ +.+|+++||||||+|||+.....+. .+++.+.++  .|+|+|++||+++.+..||
T Consensus       745 ~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~--~g~tvl~vTH~~el~~l~~  803 (918)
T 3thx_B          745 EIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRD--VKSLTLFVTHYPPVCELEK  803 (918)
T ss_dssp             HHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHT--TCCEEEEECSCGGGGGHHH
T ss_pred             HHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHh--cCCeEEEEeCcHHHHHHHh
Confidence            99999 8999999999999999999888887 677777542  4889999999998765444

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=99.83  E-value=5.3e-22  Score=175.11  Aligned_cols=167  Identities=10%  Similarity=0.024  Sum_probs=116.2

Q ss_pred             CCceeeeeE-EeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHh---cceEEEccCCcCccc
Q 020527           95 VPILNHVCL-TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR---EKIGFVGQEPQLLQM  170 (325)
Q Consensus        95 ~~iL~~isl-~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r---~~i~~v~Q~~~l~~~  170 (325)
                      .+.|+++.. .+++|++++|+||||||||||++.|++...+..|.|.+.+.+.   +...++   ..+++.+|+....  
T Consensus         9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--   83 (235)
T 2w0m_A            9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYIEK--   83 (235)
T ss_dssp             CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGBTT--
T ss_pred             chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHhhC--
Confidence            357888887 8999999999999999999999999998888888888866543   222221   2344444432110  


Q ss_pred             cHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC--EEEEeCCCCCC
Q 020527          171 DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA--ILLLDEATSAL  248 (325)
Q Consensus       171 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~--llllDEPts~L  248 (325)
                          ++.+-  ..... .             ..  +. +   . ....|.++.++...+.+...+|+  ++++||||+.+
T Consensus        84 ----~~~~~--~~~~~-~-------------~~--~~-~---~-~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~  136 (235)
T 2w0m_A           84 ----KLIII--DALMK-E-------------KE--DQ-W---S-LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALF  136 (235)
T ss_dssp             ----TEEEE--ECCC--------------------CT-T---B-CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGS
T ss_pred             ----CEEEE--ecccc-c-------------cC--ce-e---e-ecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhh
Confidence                11110  00000 0             00  00 0   0 02359999999888888888999  99999999888


Q ss_pred             --CHHHHHHHHHHHHHhhccCCCCeEEEEEecCc--------hHHHh-cCEEEEEeCC
Q 020527          249 --DSESEHYVKGVLHALRNDCKTKRTVIVIAHRL--------STIKA-VDRIVVIDDG  295 (325)
Q Consensus       249 --D~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~--------~~~~~-~d~v~~l~~G  295 (325)
                        |+.....+.+.|+++.++  .|.|||++||+.        ..+.. ||+|++|+..
T Consensus       137 ~~d~~~~~~~~~~l~~~~~~--~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~  192 (235)
T 2w0m_A          137 LDKPAMARKISYYLKRVLNK--WNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM  192 (235)
T ss_dssp             SSCGGGHHHHHHHHHHHHHH--TTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred             cCCHHHHHHHHHHHHHHHHh--CCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence              998889999999988654  489999999998        44654 9999999854

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=99.83  E-value=2.6e-22  Score=190.02  Aligned_cols=164  Identities=23%  Similarity=0.231  Sum_probs=111.2

Q ss_pred             Cceeee-eEEeeCCcEEEEEcCCCChHHHHHHHHHcCC--CCCC----Ce-EEECCEeCCCCCHHHHhcceEEEccCCcC
Q 020527           96 PILNHV-CLTIEANEVVAIVGLSGSGKSTFVNLLLRLY--EPSD----GQ-IYIDGFPLTDLDIRWLREKIGFVGQEPQL  167 (325)
Q Consensus        96 ~iL~~i-sl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~--~~~~----G~-I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l  167 (325)
                      +.|+.+ ++.|++|++++|+||||||||||++.+++..  +|++    |. |+|++.+.  .    .++++++++|.+.+
T Consensus       118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~--~----~~~~i~~i~q~~~~  191 (349)
T 1pzn_A          118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--F----RPERIREIAQNRGL  191 (349)
T ss_dssp             HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC--C----CHHHHHHHHHTTTC
T ss_pred             HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC--C----CHHHHHHHHHHcCC
Confidence            356666 6899999999999999999999999999998  6666    67 89988664  1    13568889999887


Q ss_pred             ccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc-------CCCCEEE
Q 020527          168 LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL-------RDPAILL  240 (325)
Q Consensus       168 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~-------~~p~lll  240 (325)
                      +..++.+|+.+...  ..                                 |.+|+|++.++++++       .+|+++|
T Consensus       192 ~~~~v~~ni~~~~~--~~---------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llI  236 (349)
T 1pzn_A          192 DPDEVLKHIYVARA--FN---------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLI  236 (349)
T ss_dssp             CHHHHGGGEEEEEC--CS---------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred             CHHHHhhCEEEEec--CC---------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence            76689999877421  11                                 233444444444444       7899999


Q ss_pred             EeCCCCCCCHHH------------HHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcC
Q 020527          241 LDEATSALDSES------------EHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN  302 (325)
Q Consensus       241 lDEPts~LD~~~------------~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~  302 (325)
                      +||||+++|+..            ..+++..|.++.++  .++|||+++|....... ++...+...|++++.+.
T Consensus       237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~--~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~  309 (349)
T 1pzn_A          237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANL--YDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSA  309 (349)
T ss_dssp             EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHH--TTCEEEEEEECC---------------CCCCCTTC
T ss_pred             EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHH--cCcEEEEEcccccccccccCCccccCCcceEeecC
Confidence            999999999862            34555666666543  48899999998765432 33444555565554433

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=99.83  E-value=9.2e-25  Score=207.73  Aligned_cols=228  Identities=13%  Similarity=0.129  Sum_probs=150.8

Q ss_pred             EeeehHHHHhc-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccc-cCCccc
Q 020527            2 AVLLGGMSIMI-GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKL-QRLMGH   79 (325)
Q Consensus         2 ~~~~g~~~v~~-g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~   79 (325)
                      +.+.|+|++.. |.+|.+.+.+|+.+...+..+  .+......+..+..+.+|+..++  +|........... ......
T Consensus        51 v~~~G~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~~~~~~~ir~~~~~~  126 (361)
T 2gza_A           51 CERASAWEYYAVPNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEHGTISVTIRKPSFTR  126 (361)
T ss_dssp             EEETTEEEEEECTTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCTTCCEEEEECCCCCC
T ss_pred             EEECCeEEEeCCCCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCCCCeEEEEEecCCCC
Confidence            34557888876 899999999998887776554  22222222233344556777766  3321110000000 001112


Q ss_pred             E---------EEEEEEEE---CCCCCCCCce---------eeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCe
Q 020527           80 V---------QFVNISFH---YPSRPTVPIL---------NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ  138 (325)
Q Consensus        80 i---------~~~~v~~~---y~~~~~~~iL---------~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~  138 (325)
                      +         ++++++|+   |+.. +.++|         +++||++++|++++|+||||||||||+++|+|+++|++|.
T Consensus       127 itl~~l~~~g~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~  205 (361)
T 2gza_A          127 RTLEDYAQQGFFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRL  205 (361)
T ss_dssp             CCHHHHHHTTTTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCE
T ss_pred             CCHHHHHhcCCcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceE
Confidence            4         78888888   7531 12355         9999999999999999999999999999999999999999


Q ss_pred             EEECCEeCCCCCHHHHhcceEEEc-cCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCC
Q 020527          139 IYIDGFPLTDLDIRWLREKIGFVG-QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL  217 (325)
Q Consensus       139 I~i~g~~i~~~~~~~~r~~i~~v~-Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (325)
                      |.++|..  ++.....++.++|++ |++.+                                        +         
T Consensus       206 I~ie~~~--e~~~~~~~~~v~~v~~q~~~~----------------------------------------~---------  234 (361)
T 2gza_A          206 ITIEDVP--ELFLPDHPNHVHLFYPSEAKE----------------------------------------E---------  234 (361)
T ss_dssp             EEEESSS--CCCCTTCSSEEEEECC-------------------------------------------------------
T ss_pred             EEECCcc--ccCccccCCEEEEeecCcccc----------------------------------------c---------
Confidence            9999852  333333567789988 55421                                        0         


Q ss_pred             CChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCC
Q 020527          218 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDG  295 (325)
Q Consensus       218 LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G  295 (325)
                      ++++..+|-.|++++..+|+.+++|||...       .+.+.+..+..   ...|++.++|..+....+||+..+..+
T Consensus       235 ~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~-------~~~~~l~~l~~---g~~~~l~t~H~~~~~~~~~Rl~~l~~~  302 (361)
T 2gza_A          235 ENAPVTAATLLRSCLRMKPTRILLAELRGG-------EAYDFINVAAS---GHGGSITSCHAGSCELTFERLALMVLQ  302 (361)
T ss_dssp             ----CCHHHHHHHHTTSCCSEEEESCCCST-------HHHHHHHHHHT---TCCSCEEEEECSSHHHHHHHHHHHHTT
T ss_pred             cccccCHHHHHHHHHhcCCCEEEEcCchHH-------HHHHHHHHHhc---CCCeEEEEECCCCHHHHHHHHHHHHhc
Confidence            123345788899999999999999999862       34556666643   234789999998755568888777665

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=99.83  E-value=1.7e-22  Score=187.64  Aligned_cols=165  Identities=19%  Similarity=0.136  Sum_probs=111.0

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCH----HHH--hcceEEEccCCcCc-cccHHHHHhcC
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI----RWL--REKIGFVGQEPQLL-QMDIKSNIMYG  179 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~----~~~--r~~i~~v~Q~~~l~-~~tv~enl~~~  179 (325)
                      +|++++|+||||||||||+++|+|+++|++|+|.++|.++.....    ..+  +..++|++|++.++ ..++++|+.++
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~  180 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM  180 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence            699999999999999999999999999999999999998765431    222  45799999999877 46899998653


Q ss_pred             CCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC--EEEEeCCCCCCCHHHHHHHH
Q 020527          180 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA--ILLLDEATSALDSESEHYVK  257 (325)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~--llllDEPts~LD~~~~~~i~  257 (325)
                      ..            ..... .+++..  |.. ......++..++||++||||++.+|+  ++.|| |+++      ..+.
T Consensus       181 ~~------------~~~d~-~llDt~--G~~-~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~------~~~~  237 (304)
T 1rj9_A          181 KA------------RGYDL-LFVDTA--GRL-HTKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTG------QNGL  237 (304)
T ss_dssp             HH------------HTCSE-EEECCC--CCC-TTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBC------THHH
T ss_pred             Hh------------CCCCE-EEecCC--CCC-CchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHH------HHHH
Confidence            10            00000 011111  110 00001246666999999999999999  44555 4444      4445


Q ss_pred             HHHHHhhccCCCCeEEEEEecCchHHH---------h-cCEEEEEeCCE
Q 020527          258 GVLHALRNDCKTKRTVIVIAHRLSTIK---------A-VDRIVVIDDGR  296 (325)
Q Consensus       258 ~~l~~l~~~~~~g~tvi~vtH~~~~~~---------~-~d~v~~l~~G~  296 (325)
                      +.++++.+.  .+.|+|++||+.+..+         . --.|.++-.|+
T Consensus       238 ~~~~~~~~~--~~~t~iivTh~d~~a~gg~~l~i~~~~~~pi~~ig~Ge  284 (304)
T 1rj9_A          238 EQAKKFHEA--VGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGE  284 (304)
T ss_dssp             HHHHHHHHH--HCCSEEEEECTTSSCCCTTHHHHHHHHCCCEEEEECSS
T ss_pred             HHHHHHHHH--cCCcEEEEECCcccccccHHHHHHHHHCCCeEEEeCCC
Confidence            556665432  3789999999854321         1 13677777775

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.82  E-value=1e-23  Score=184.78  Aligned_cols=143  Identities=11%  Similarity=0.098  Sum_probs=105.1

Q ss_pred             eeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc---cccHHHHHhcCC-
Q 020527          105 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL---QMDIKSNIMYGC-  180 (325)
Q Consensus       105 i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~---~~tv~enl~~~~-  180 (325)
                      .++|++++|+||||||||||+++|+|+++|                      .++|++|++.++   ..|+++++.+.. 
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~   60 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD   60 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence            578999999999999999999999999875                      589999998776   357888876532 


Q ss_pred             -CCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHH----HHHHHHHHHHcCCCCEEEEeCCCCC-------C
Q 020527          181 -PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ----KQRIAIARAILRDPAILLLDEATSA-------L  248 (325)
Q Consensus       181 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq----~QRv~iAral~~~p~llllDEPts~-------L  248 (325)
                       +.....+.+.+.++..++.+.         .......+|+||    +||+++||+++.+|+++++||||++       |
T Consensus        61 ~~~~~~~~~~~~~l~~~~~~~~---------~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~l  131 (211)
T 3asz_A           61 HPDAFDLALYLEHAQALLRGLP---------VEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFV  131 (211)
T ss_dssp             SGGGBCHHHHHHHHHHHHTTCC---------EEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEE
T ss_pred             ChhhhhHHHHHHHHHHHHcCCC---------cCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEE
Confidence             111223333344333221111         111234689996    5789999999999999999999999       9


Q ss_pred             CHHHHHHHHHHHHHhhccCCCCeEEEEEecCc
Q 020527          249 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRL  280 (325)
Q Consensus       249 D~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~  280 (325)
                      |+....++.+.+.+..++  .|.|++.++|+.
T Consensus       132 d~~~~~~~~r~l~r~~~~--~g~t~~~~~~~~  161 (211)
T 3asz_A          132 DADADERFIRRLKRDVLE--RGRSLEGVVAQY  161 (211)
T ss_dssp             ECCHHHHHHHHHHHHHHH--SCCCHHHHHHHH
T ss_pred             eCCHHHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence            999999899988775332  478999999985

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=99.81  E-value=8e-21  Score=196.60  Aligned_cols=167  Identities=13%  Similarity=0.122  Sum_probs=109.7

Q ss_pred             cEEEEEEEEECCCC--CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-CCCeEEECCEeCCCCCHHHHh
Q 020527           79 HVQFVNISFHYPSR--PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYIDGFPLTDLDIRWLR  155 (325)
Q Consensus        79 ~i~~~~v~~~y~~~--~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-~~G~I~i~g~~i~~~~~~~~r  155 (325)
                      .+.+++...-.=..  ++..+++|+||+ ++|++++|+||||||||||+|+++|+..+ ..|      ..+..     .+
T Consensus       577 ~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vpa-----~~  644 (800)
T 1wb9_A          577 GIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYVPA-----QK  644 (800)
T ss_dssp             CEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBSS-----SE
T ss_pred             CEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cccch-----hc
Confidence            37777754222000  123689999999 99999999999999999999999997532 233      11111     12


Q ss_pred             cceEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 020527          156 EKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR  234 (325)
Q Consensus       156 ~~i~~v~Q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~  234 (325)
                      ..+++++|   +| ..++.||+..+.                                   ..+|+++++ ++.+...+.
T Consensus       645 ~~i~~~~~---i~~~~~~~d~l~~~~-----------------------------------stf~~e~~~-~~~il~~a~  685 (800)
T 1wb9_A          645 VEIGPIDR---IFTRVGAADDLASGR-----------------------------------STFMVEMTE-TANILHNAT  685 (800)
T ss_dssp             EEECCCCE---EEEEEC----------------------------------------------CHHHHHH-HHHHHHHCC
T ss_pred             ccceeHHH---HHhhCCHHHHHHhhh-----------------------------------hhhhHHHHH-HHHHHHhcc
Confidence            34666665   44 456666653320                                   125677664 444455689


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHH-HHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEE
Q 020527          235 DPAILLLDEATSALDSESEHYV-KGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRII  298 (325)
Q Consensus       235 ~p~llllDEPts~LD~~~~~~i-~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~  298 (325)
                      +|+++|||||++|+|+.....+ .++++.+.++  .|.++|++||+.+....||++..+.+|++.
T Consensus       686 ~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~--~g~~vl~~TH~~el~~l~d~~~~v~n~~~~  748 (800)
T 1wb9_A          686 EYSLVLMDEIGRGTSTYDGLSLAWACAENLANK--IKALTLFATHYFELTQLPEKMEGVANVHLD  748 (800)
T ss_dssp             TTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHT--TCCEEEEECSCGGGGGHHHHSTTEEEEEEE
T ss_pred             CCCEEEEECCCCCCChhHHHHHHHHHHHHHHhc--cCCeEEEEeCCHHHHHHhhhhhceEEEEEE
Confidence            9999999999999999766664 6778877642  378999999999877778776555666554

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.80  E-value=2e-22  Score=175.53  Aligned_cols=170  Identities=20%  Similarity=0.227  Sum_probs=96.4

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCC-----CCCCCeEEEC-------CEeC
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY-----EPSDGQIYID-------GFPL  146 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~-----~~~~G~I~i~-------g~~i  146 (325)
                      .|+++|++|.|+.    .++++  |.+++|..++|+|+||||||||++.|+|..     .|+.|.+.+.       +..+
T Consensus         3 ~l~~~~~~~~~~~----~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l   76 (210)
T 1pui_A            3 NLNYQQTHFVMSA----PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRL   76 (210)
T ss_dssp             --------CEEEE----SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEE
T ss_pred             chhhhhhhheeec----CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEE
Confidence            4789999999962    47888  889999999999999999999999999998     7888877642       2222


Q ss_pred             C---CCC--------HHHHhcceEEEccCCcCcc-ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccc-cc
Q 020527          147 T---DLD--------IRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET-LV  213 (325)
Q Consensus       147 ~---~~~--------~~~~r~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  213 (325)
                      .   ...        ...+++.+++++|....+. ..+..++..+    ..... .+      +.+++......... .-
T Consensus        77 ~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~----~~~~~-~~------~~~~~~~~~~~~~~v~n  145 (210)
T 1pui_A           77 VDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHP----LKDLD-QQ------MIEWAVDSNIAVLVLLT  145 (210)
T ss_dssp             EECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSC----CCHHH-HH------HHHHHHHTTCCEEEEEE
T ss_pred             EECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCC----CchhH-HH------HHHHHHHcCCCeEEEEe
Confidence            1   110        0122333444444322221 1222222221    11111 01      11122221111000 00


Q ss_pred             CCCCCChHHHHH-HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc
Q 020527          214 DDDLLSGGQKQR-IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRN  265 (325)
Q Consensus       214 ~~~~LSgGq~QR-v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~  265 (325)
                      ....+|+||+|| +..+++++.+|+++++|||||++|+.....+++.|.++.+
T Consensus       146 K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~  198 (210)
T 1pui_A          146 KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS  198 (210)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred             cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence            124589999999 8999999999999999999999999999999999988764

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=99.80  E-value=1.2e-20  Score=178.88  Aligned_cols=146  Identities=23%  Similarity=0.267  Sum_probs=100.9

Q ss_pred             EEEEEECCCCCCCCceeeeeE-------EeeCCcEEEEEcCCCChHHHHHHHHHcCCCCC-CCeEEECCEeCCCCCHHHH
Q 020527           83 VNISFHYPSRPTVPILNHVCL-------TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYIDGFPLTDLDIRWL  154 (325)
Q Consensus        83 ~~v~~~y~~~~~~~iL~~isl-------~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~-~G~I~i~g~~i~~~~~~~~  154 (325)
                      .+++++|... ..+.|+++.+       .+.+|++++|+||||||||||+++|+|+++|+ .|.|...+.++ ++.   .
T Consensus        92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~  166 (356)
T 3jvv_A           92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---H  166 (356)
T ss_dssp             EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---C
T ss_pred             cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---h
Confidence            4566665332 2356777766       67889999999999999999999999999987 56665444333 221   1


Q ss_pred             hcceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 020527          155 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR  234 (325)
Q Consensus       155 r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~  234 (325)
                      +...++++|......             .                                  ++-.+    +|||||.+
T Consensus       167 ~~~~~~v~q~~~~~~-------------~----------------------------------~~~~~----~La~aL~~  195 (356)
T 3jvv_A          167 ESKKCLVNQREVHRD-------------T----------------------------------LGFSE----ALRSALRE  195 (356)
T ss_dssp             CCSSSEEEEEEBTTT-------------B----------------------------------SCHHH----HHHHHTTS
T ss_pred             hccccceeeeeeccc-------------c----------------------------------CCHHH----HHHHHhhh
Confidence            233455665432110             0                                  01111    99999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeC
Q 020527          235 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD  294 (325)
Q Consensus       235 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~  294 (325)
                      +|++|++||||   |+++...+.    ++..   .|+++++++|+.+.+..|||++.|..
T Consensus       196 ~PdvillDEp~---d~e~~~~~~----~~~~---~G~~vl~t~H~~~~~~~~dRli~l~~  245 (356)
T 3jvv_A          196 DPDIILVGEMR---DLETIRLAL----TAAE---TGHLVFGTLHTTSAAKTIDRVVDVFP  245 (356)
T ss_dssp             CCSEEEESCCC---SHHHHHHHH----HHHH---TTCEEEEEESCSSHHHHHHHHHHTSC
T ss_pred             CcCEEecCCCC---CHHHHHHHH----HHHh---cCCEEEEEEccChHHHHHHHHhhhcC
Confidence            99999999999   766644333    3332   48899999999998877899887744

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=99.79  E-value=3.8e-22  Score=189.79  Aligned_cols=177  Identities=16%  Similarity=0.106  Sum_probs=125.8

Q ss_pred             ceeeeeEEeeC--CcEEEEEcCCCChHHHHHHHHHcCCCCCC----CeEEEC----CEeCCCCCHHHHhcceEEEccCCc
Q 020527           97 ILNHVCLTIEA--NEVVAIVGLSGSGKSTFVNLLLRLYEPSD----GQIYID----GFPLTDLDIRWLREKIGFVGQEPQ  166 (325)
Q Consensus        97 iL~~isl~i~~--Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~----G~I~i~----g~~i~~~~~~~~r~~i~~v~Q~~~  166 (325)
                      +.+.|+++|++  |++++|+||||||||||+++|+|+++|++    |+|+++    |.++ .....++ ++|++++|++.
T Consensus       157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~  234 (365)
T 1lw7_A          157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI  234 (365)
T ss_dssp             GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred             ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence            45779999999  99999999999999999999999999999    999873    5444 3333444 45999999888


Q ss_pred             CccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc-CCCCEEEEeC--
Q 020527          167 LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL-RDPAILLLDE--  243 (325)
Q Consensus       167 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~-~~p~llllDE--  243 (325)
                      +|..|+.+|+.++..   ....  .   .     ..              .+|+|++||..+++++. .+|++++|||  
T Consensus       235 ~~~~t~~~nl~~~~~---~~~~--~---~-----~~--------------~~~~~~~~~~~i~~~~~~~~~~lllLdE~~  287 (365)
T 1lw7_A          235 DYAVRHSHKIAFIDT---DFIT--T---Q-----AF--------------CIQYEGKAHPFLDSMIKEYPFDVTILLKNN  287 (365)
T ss_dssp             HHHHHHCSSEEEESS---CHHH--H---H-----HH--------------HHHHHSCCCHHHHHHHHHSCCSEEEEEECC
T ss_pred             HHHHhccCCEEEEeC---CchH--H---H-----HH--------------HHHHcCCCCHHHHHHHhhcCCCEEEECCCC
Confidence            788899999987521   1110  0   0     00              13567788888888874 6999999999  


Q ss_pred             -CC------CCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHH
Q 020527          244 -AT------SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAEL  306 (325)
Q Consensus       244 -Pt------s~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l  306 (325)
                       |+      +++|+..+..+.+.|.++.++  .+.++++++|.-...+.++++..+++  ++..++++++
T Consensus       288 ~p~~~~g~~~sld~~~r~~l~~~l~~l~~~--~~~~ililde~~~~~r~~~~i~~i~~--~l~~~~~~~~  353 (365)
T 1lw7_A          288 TEWVDDGLRSLGSQKQRQQFQQLLKKLLDK--YKVPYIEIESPSYLDRYNQVKAVIEK--VLNEEEISEL  353 (365)
T ss_dssp             CC-----------CCSHHHHHHHHHHHHHG--GGCCCEEEECSSHHHHHHHHHHHHHH--HTSCCCCSSC
T ss_pred             CCcccCCCcCCccHHHHHHHHHHHHHHHHH--cCCCEEEeCCCCHHHHHHHHHHHHHH--HhcccchhHh
Confidence             65      589999999999999887542  36799999986333334666655543  3334455544

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.78  E-value=1.2e-20  Score=182.08  Aligned_cols=164  Identities=20%  Similarity=0.157  Sum_probs=99.7

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .|.++||+++|+++   .+++++||+|      +|+||||||||||+++|+|+..|..|   .+|..+... ....+..+
T Consensus        11 ~l~~~~l~~~y~~~---~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~-~t~~~~~i   77 (418)
T 2qag_C           11 YVGFANLPNQVYRK---SVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIK-KTVQVEQS   77 (418)
T ss_dssp             ----CCCCCCTTTT---TCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEEE
T ss_pred             cEEEEecceeECCE---EEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCc-cceeeeeE
Confidence            58999999999753   6999999998      99999999999999999999886665   233322211 11123568


Q ss_pred             EEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC
Q 020527          159 GFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA  237 (325)
Q Consensus       159 ~~v~Q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~  237 (325)
                      ++++|++.++ ..||+||+.++...  ........     +.++++.            .++.+++||++||||++.+|+
T Consensus        78 ~~v~q~~~~~~~Ltv~Dt~g~~~~~--~~~~~~~~-----i~~~i~~------------~~~~~l~qr~~IaRal~~d~~  138 (418)
T 2qag_C           78 KVLIKEGGVQLLLTIVDTPGFGDAV--DNSNCWQP-----VIDYIDS------------KFEDYLNAESRVNRRQMPDNR  138 (418)
T ss_dssp             ECC------CEEEEEEECC-------------CHH-----HHHHHHH------------HHHHHTTTSCC-CCCCCCCC-
T ss_pred             EEEEecCCcccceeeeechhhhhhc--cchhhHHH-----HHHHHHH------------HHHHHHHHHHHHHHHhccCCC
Confidence            9999988776 68999998876321  11110011     1122221            256778899999999999999


Q ss_pred             ---EEEEeCCC-CCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchH
Q 020527          238 ---ILLLDEAT-SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST  282 (325)
Q Consensus       238 ---llllDEPt-s~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~  282 (325)
                         ++++|||| ++||+...    ++++.+.    .+.++|+|.|..+.
T Consensus       139 ~~vlL~ldePt~~~L~~~d~----~~lk~L~----~~v~iIlVinK~Dl  179 (418)
T 2qag_C          139 VQCCLYFIAPSGHGLKPLDI----EFMKRLH----EKVNIIPLIAKADT  179 (418)
T ss_dssp             CCEEEEECCC-CCSCCHHHH----HHHHHHT----TTSEEEEEEESTTS
T ss_pred             eeEEEEEecCcccCCCHHHH----HHHHHHh----ccCcEEEEEEcccC
Confidence               99999999 69998763    4455553    25677888776553

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=99.78  E-value=9.2e-22  Score=167.97  Aligned_cols=137  Identities=15%  Similarity=0.195  Sum_probs=95.9

Q ss_pred             cEEEEEcCCCChHHHHHHHHHcCCCCC---CCeEEECCEeCCCCC---HHHHh-cceE----EEccCCcCccccHHHHHh
Q 020527          109 EVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLD---IRWLR-EKIG----FVGQEPQLLQMDIKSNIM  177 (325)
Q Consensus       109 e~~~iiG~nGsGKSTLl~~l~gl~~~~---~G~I~i~g~~i~~~~---~~~~r-~~i~----~v~Q~~~l~~~tv~enl~  177 (325)
                      ++++|+|+||||||||+++|+|+++|+   .|.|.++|.++.+++   ...+| ++++    +++|++.+|   +.+   
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~---   76 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR---   76 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence            589999999999999999999999998   899999999876654   44566 4677    889988766   111   


Q ss_pred             cCCCCCCCHHHHHHHHHHcCHHHHHHh-CCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEE-------EEeCCCC---
Q 020527          178 YGCPKDVKNEDIEWAAKQAYVHEFILS-LPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL-------LLDEATS---  246 (325)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ll-------llDEPts---  246 (325)
                       +     .. ..     .+++.+++.+ ++ ++++.+.+. |||||+||++||||++.+|++.       .=|.|..   
T Consensus        77 -~-----~~-~~-----~a~l~~~i~~~l~-g~dt~i~Eg-lSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~  142 (171)
T 2f1r_A           77 -V-----SE-EE-----GNDLDWIYERYLS-DYDLVITEG-FSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHK  142 (171)
T ss_dssp             -C-----CH-HH-----HTCHHHHHHHHTT-TCSEEEEES-CGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSC
T ss_pred             -C-----Ch-hh-----hhCHHHHHHhhCC-CCCEEEECC-cCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCc
Confidence             1     11 11     5688889988 88 888888764 9999999999999999999873       2244432   


Q ss_pred             CCCHHHHHHHHHHHHHhhc
Q 020527          247 ALDSESEHYVKGVLHALRN  265 (325)
Q Consensus       247 ~LD~~~~~~i~~~l~~l~~  265 (325)
                      -+|......+.+.+.+..+
T Consensus       143 ~f~~~~~~~~a~~i~~~~~  161 (171)
T 2f1r_A          143 WFRRDEVERIAEFILSLLR  161 (171)
T ss_dssp             EECTTCHHHHHHHHHHHHT
T ss_pred             ccCcccHHHHHHHHHHHHh
Confidence            2334445667777755543

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=99.76  E-value=6.6e-19  Score=161.15  Aligned_cols=153  Identities=15%  Similarity=0.163  Sum_probs=97.1

Q ss_pred             EeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHH-hcCCCC
Q 020527          104 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI-MYGCPK  182 (325)
Q Consensus       104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl-~~~~~~  182 (325)
                      .+++|++++|+||||||||||++.+++...  .|.+. .|.+...      ...+.|+..+...  ..+...+ .++.  
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~--   92 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGA--   92 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHT--
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC------CccEEEEECCCCH--HHHHHHHHHHHh--
Confidence            478999999999999999999999998664  57663 3543321      2357777655432  1122222 1221  


Q ss_pred             CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCC--CCCHHHH---HHHH
Q 020527          183 DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATS--ALDSESE---HYVK  257 (325)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts--~LD~~~~---~~i~  257 (325)
                      ...........+...+.+         ........||+||+|++   ++++.+|+++++||||+  ++|+...   .+++
T Consensus        93 ~~~~~~~~~~~~~l~l~~---------~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~  160 (279)
T 1nlf_A           93 HLSAEERQAVADGLLIQP---------LIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVI  160 (279)
T ss_dssp             TSCHHHHHHHHHHEEECC---------CTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHH
T ss_pred             hcChhhhhhccCceEEee---------cCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHH
Confidence            112222222223222111         11122357999998865   68889999999999999  9998544   7777


Q ss_pred             HHHHHhhccCCCCeEEEEEecCchHH
Q 020527          258 GVLHALRNDCKTKRTVIVIAHRLSTI  283 (325)
Q Consensus       258 ~~l~~l~~~~~~g~tvi~vtH~~~~~  283 (325)
                      +.|.++.++  .|+|||+++|+....
T Consensus       161 ~~L~~l~~~--~g~tvi~i~H~~~~~  184 (279)
T 1nlf_A          161 GRMEAIAAD--TGCSIVFLHHASKGA  184 (279)
T ss_dssp             HHHHHHHHH--HCCEEEEEEEC----
T ss_pred             HHHHHHHHH--cCCEEEEEecCCCcc
Confidence            888887643  488999999998654

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.75  E-value=7.2e-20  Score=162.29  Aligned_cols=142  Identities=11%  Similarity=0.098  Sum_probs=99.7

Q ss_pred             EEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC--CCCeEEECCEeCCCCCHHHHhcceEEEccCCcCcc-ccH----HHH
Q 020527          103 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDI----KSN  175 (325)
Q Consensus       103 l~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~--~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~tv----~en  175 (325)
                      -..++|++++|+||||||||||+++|+|+++|  .+|.|.+.+.+...    ..+..++|+||++..|. .++    .||
T Consensus        11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~   86 (219)
T 1s96_A           11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEH   86 (219)
T ss_dssp             ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred             ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHH
Confidence            35789999999999999999999999999986  68999988866432    12567999999988774 566    455


Q ss_pred             HhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHH
Q 020527          176 IMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHY  255 (325)
Q Consensus       176 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~  255 (325)
                      +.+......                                 .|   +++   ++.++..++++|||     ||+.+..+
T Consensus        87 ~~~~~~~yg---------------------------------~~---~~~---v~~~l~~G~illLD-----LD~~~~~~  122 (219)
T 1s96_A           87 AEVFGNYYG---------------------------------TS---REA---IEQVLATGVDVFLD-----IDWQGAQQ  122 (219)
T ss_dssp             EEETTEEEE---------------------------------EE---HHH---HHHHHTTTCEEEEE-----CCHHHHHH
T ss_pred             HHHHhccCC---------------------------------CC---HHH---HHHHHhcCCeEEEE-----ECHHHHHH
Confidence            543210000                                 01   111   22333457999999     99999988


Q ss_pred             HHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHh
Q 020527          256 VKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL  307 (325)
Q Consensus       256 i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~  307 (325)
                      +.+.+.       .+.||+++||+++.+..  |+  +.+|    .++++++.
T Consensus       123 i~~~l~-------~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~  159 (219)
T 1s96_A          123 IRQKMP-------HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIA  159 (219)
T ss_dssp             HHHHCT-------TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHH
T ss_pred             HHHHcc-------CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHH
Confidence            887764       37899999999998754  22  5666    46777664

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.74  E-value=2.6e-19  Score=172.60  Aligned_cols=179  Identities=16%  Similarity=0.169  Sum_probs=114.4

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcE--EEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhc
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEV--VAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE  156 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~--~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~  156 (325)
                      .+++++ +++|++.   + |+++||++++|++  ++|+||||||||||+++|+|+.        ++|.++........++
T Consensus        16 ~l~~~~-~~~y~~~---~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~   82 (427)
T 2qag_B           16 TVPLAG-HVGFDSL---P-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQ   82 (427)
T ss_dssp             -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEE
T ss_pred             eEEEee-EEEECCe---e-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEe
Confidence            366677 8889642   5 9999999999999  9999999999999999999984        3444443322223356


Q ss_pred             ceEEEccCCcCc-cccHHHHHhcCCCCCCCHHH----HHHHHHHcCHHHHHHhC-C------CCcccc----c---C--C
Q 020527          157 KIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNED----IEWAAKQAYVHEFILSL-P------CGYETL----V---D--D  215 (325)
Q Consensus       157 ~i~~v~Q~~~l~-~~tv~enl~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~------~~~~~~----~---~--~  215 (325)
                      .++|++|++.++ ..||.||+.++..  .....    +...++ ..+.+++... .      ...+..    +   .  .
T Consensus        83 ~i~~v~Q~~~l~~~ltv~D~~~~g~~--~~~~~~~~~i~~~i~-~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~  159 (427)
T 2qag_B           83 SNTYDLQESNVRLKLTIVSTVGFGDQ--INKEDSYKPIVEFID-AQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTG  159 (427)
T ss_dssp             EEEEEEEC--CEEEEEEEEEECCCC---CCHHHHSHHHHHHHH-HHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC
T ss_pred             eEEEEeecCccccccchhhhhhhhhc--cccchhhhHHHHHHH-HHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCC
Confidence            799999999887 6899999988742  22211    111111 1122333332 1      111111    1   1  1


Q ss_pred             CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH-hhccCCCCeEEEEEecC
Q 020527          216 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHA-LRNDCKTKRTVIVIAHR  279 (325)
Q Consensus       216 ~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~-l~~~~~~g~tvi~vtH~  279 (325)
                      ..|+-..   +.++++|..+++++++|||+..|.+.....+.+.+++ +..   .|.+|+.++.|
T Consensus       160 ~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~---~gi~I~~is~~  218 (427)
T 2qag_B          160 HSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVS---NGVQIYQFPTD  218 (427)
T ss_dssp             ---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBT---TBCCCCCCC--
T ss_pred             CCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHH---cCCcEEecCCC
Confidence            2466555   7999999999999999999999999888888888876 643   58899999865

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=99.73  E-value=1.3e-17  Score=142.48  Aligned_cols=78  Identities=26%  Similarity=0.389  Sum_probs=68.0

Q ss_pred             CCCChHHHHHHHHHHHHc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEE
Q 020527          216 DLLSGGQKQRIAIARAIL----RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVV  291 (325)
Q Consensus       216 ~~LSgGq~QRv~iAral~----~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~  291 (325)
                      ..||||||||++|||+|+    .+|+++||||||++||+.+...+.+.|+++.+    +.++|+|||+...+..||+++.
T Consensus        63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~----~~~~ivith~~~~~~~ad~i~~  138 (173)
T 3kta_B           63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK----ESQFIVITLRDVMMANADKIIG  138 (173)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT----TSEEEEECSCHHHHTTCSEEEE
T ss_pred             ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc----CCEEEEEEecHHHHHhCCEEEE
Confidence            469999999999999997    45799999999999999999999999998853    4589999999888778999985


Q ss_pred             E--eCCEE
Q 020527          292 I--DDGRI  297 (325)
Q Consensus       292 l--~~G~i  297 (325)
                      +  .+|..
T Consensus       139 v~~~~g~s  146 (173)
T 3kta_B          139 VSMRDGVS  146 (173)
T ss_dssp             EEEETTEE
T ss_pred             EEecCCEE
Confidence            5  56753

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=99.72  E-value=4.5e-17  Score=142.52  Aligned_cols=152  Identities=17%  Similarity=0.118  Sum_probs=97.3

Q ss_pred             CceeeeeE-EeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHH
Q 020527           96 PILNHVCL-TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS  174 (325)
Q Consensus        96 ~iL~~isl-~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~e  174 (325)
                      +.|+.+.. .+++|++++|+||||||||||++.+++  ++..+.++++..+  ..+..                  .+.+
T Consensus         7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~------------------~~~~   64 (220)
T 2cvh_A            7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPE------------------RLVQ   64 (220)
T ss_dssp             HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHH------------------HHHH
T ss_pred             HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHH------------------HHHH
Confidence            45666665 689999999999999999999999999  3333334433221  01111                  1111


Q ss_pred             HHh-cCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHH--HHHHHHHHHHcCC-CCEEEEeCCCCCCCH
Q 020527          175 NIM-YGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ--KQRIAIARAILRD-PAILLLDEATSALDS  250 (325)
Q Consensus       175 nl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq--~QRv~iAral~~~-p~llllDEPts~LD~  250 (325)
                      ... ++    ...+            ++.+.+..        ..+|+++  +|+++.+++++.+ |+++++||||+.+|+
T Consensus        65 ~~~~~~----~~~~------------~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~  120 (220)
T 2cvh_A           65 MAETRG----LNPE------------EALSRFIL--------FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRA  120 (220)
T ss_dssp             HHHTTT----CCHH------------HHHHHEEE--------ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTG
T ss_pred             HHHhcC----CChH------------HHhhcEEE--------EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhh
Confidence            111 11    1111            11111110        1245553  6788899999986 999999999999997


Q ss_pred             HHH--------HHHHHHHHHhhccCCCCeEEEEEecCch-------------HHHh-cCEEEEEeCC
Q 020527          251 ESE--------HYVKGVLHALRNDCKTKRTVIVIAHRLS-------------TIKA-VDRIVVIDDG  295 (325)
Q Consensus       251 ~~~--------~~i~~~l~~l~~~~~~g~tvi~vtH~~~-------------~~~~-~d~v~~l~~G  295 (325)
                      ...        ..+.+.|+++.++  .++|+|+++|...             .+.. ||++++|+..
T Consensus       121 ~~~~~~~~~~~~~~~~~L~~l~~~--~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~  185 (220)
T 2cvh_A          121 EENRSGLIAELSRQLQVLLWIARK--HNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL  185 (220)
T ss_dssp             GGGSSTTHHHHHHHHHHHHHHHHH--HTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHH--cCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence            432        3355556666543  3789999999865             3444 9999999854

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=99.72  E-value=9.3e-19  Score=166.93  Aligned_cols=126  Identities=23%  Similarity=0.334  Sum_probs=94.2

Q ss_pred             ceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCC-CCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHH
Q 020527           97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSN  175 (325)
Q Consensus        97 iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~-~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~en  175 (325)
                      +|++++  +++|++++|+||||||||||+++|+|+++|+ +|+|.+.+.++. +   .++..+++++|..          
T Consensus       127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~----------  190 (372)
T 2ewv_A          127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQRE----------  190 (372)
T ss_dssp             SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEE----------
T ss_pred             HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeee----------
Confidence            566655  7899999999999999999999999999998 899988776553 2   2456788998851          


Q ss_pred             HhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHH
Q 020527          176 IMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHY  255 (325)
Q Consensus       176 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~  255 (325)
                        ++                  ..      +         ..|      +.+|+++|..+|+++++|||+   |+++.. 
T Consensus       191 --~g------------------~~------~---------~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~-  225 (372)
T 2ewv_A          191 --VG------------------ED------T---------KSF------ADALRAALREDPDVIFVGEMR---DLETVE-  225 (372)
T ss_dssp             --BT------------------TT------B---------SCS------HHHHHHHTTSCCSEEEESCCC---SHHHHH-
T ss_pred             --cC------------------CC------H---------HHH------HHHHHHHhhhCcCEEEECCCC---CHHHHH-
Confidence              11                  00      0         124      469999999999999999999   776543 


Q ss_pred             HHHHHHHhhccCCCCeEEEEEecCchHHHhcCEE
Q 020527          256 VKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI  289 (325)
Q Consensus       256 i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v  289 (325)
                        ..++..    ..|.+++.++|+.+....|||+
T Consensus       226 --~~l~~~----~~g~~vi~t~H~~~~~~~~~rl  253 (372)
T 2ewv_A          226 --TALRAA----ETGHLVFGTLHTNTAIDTIHRI  253 (372)
T ss_dssp             --HHHHHH----TTTCEEEECCCCCSHHHHHHHH
T ss_pred             --HHHHHH----hcCCEEEEEECcchHHHHHHHH
Confidence              344443    2478999999997744446664

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=99.72  E-value=1.6e-20  Score=163.64  Aligned_cols=158  Identities=19%  Similarity=0.289  Sum_probs=106.1

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcCCC-------------CCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccH
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRLYE-------------PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDI  172 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~-------------~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv  172 (325)
                      ++|++++|+||||||||||+++|+|+++             |..|+  ++|.++...+...+++.+   +|+..++..++
T Consensus         2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~~   76 (198)
T 1lvg_A            2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAEF   76 (198)
T ss_dssp             ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeeee
Confidence            5799999999999999999999999886             78887  578777666777777654   68888888888


Q ss_pred             HHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH-HHcCCCCEEEEeCCCCCCCHH
Q 020527          173 KSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR-AILRDPAILLLDEATSALDSE  251 (325)
Q Consensus       173 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr-al~~~p~llllDEPts~LD~~  251 (325)
                      .+|+ +|.    ..+.+.++++..... +.+..+.|+.+..        + +++ .|| +++.+|++++|||||+++|..
T Consensus        77 ~~n~-~g~----~~~~i~~~~~~~~~~-~~~~~~~g~~~~~--------~-~~~-~~~~~~l~~p~~~ilde~~~~~d~~  140 (198)
T 1lvg_A           77 SGNL-YGT----SKEAVRAVQAMNRIC-VLDVDLQGVRSIK--------K-TDL-CPIYIFVQPPSLDVLEQRLRLRNTE  140 (198)
T ss_dssp             TTEE-EEE----EHHHHHHHHHTTCEE-EEECCHHHHHHHT--------T-SSC-CCEEEEEECSCHHHHHHHHHHHTCS
T ss_pred             cCcc-CCC----CHHHHHHHHHcCCcE-EEECCHHHHHHHH--------h-cCC-CcEEEEEeCCCHHHHHHHHHhcCCC
Confidence            8887 652    244455554431100 0000000000000        0 012 566 788899999999999999999


Q ss_pred             HHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeC
Q 020527          252 SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD  294 (325)
Q Consensus       252 ~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~  294 (325)
                      +.+.+.+.|....++       +.++|  +. ..+|+|+++++
T Consensus       141 ~e~~i~~~l~~~~~~-------~~~a~--~~-~~~D~iivnd~  173 (198)
T 1lvg_A          141 TEESLAKRLAAARTD-------MESSK--EP-GLFDLVIINDD  173 (198)
T ss_dssp             CHHHHHHHHHHHHHH-------TTGGG--ST-TTCSEEEECSS
T ss_pred             CHHHHHHHHHHHHHH-------HHHhh--cc-CCceEEEECCC
Confidence            999999988877542       23456  22 56999887763

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=99.70  E-value=6.8e-20  Score=157.59  Aligned_cols=141  Identities=16%  Similarity=0.063  Sum_probs=90.3

Q ss_pred             EeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCC-
Q 020527          104 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-  182 (325)
Q Consensus       104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~-  182 (325)
                      .+++|++++|+||||||||||+++|+|.  |+.|.|.++|.++....  ..++.++|++|++. ...++.+|+.+.... 
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~--~~~~~~~~~~~~~~-~~~~v~~~l~~~~~~~   79 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYI--KHGRIDPWLPQSHQ-QNRMIMQIAADVAGRY   79 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTC--CSSCCCTTSSSHHH-HHHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhh--hcccccCCccchhh-hhHHHHHHHHHHHHHH
Confidence            4789999999999999999999999998  78999999987653211  11234678888654 356888887542000 


Q ss_pred             --CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 020527          183 --DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL  260 (325)
Q Consensus       183 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l  260 (325)
                        ......+........+..+.. .      ......+|+|++||+++||++.++|+++        +|+...+.+.+.+
T Consensus        80 ~~~~~~~~~~~~~~~~~l~~~~~-~------~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~  144 (191)
T 1zp6_A           80 AKEGYFVILDGVVRPDWLPAFTA-L------ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQF  144 (191)
T ss_dssp             HHTSCEEEECSCCCTTTTHHHHT-T------CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHT
T ss_pred             hccCCeEEEeccCcHHHHHHHHh-c------CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHH
Confidence              000000000000001111110 0      0011359999999999999999999876        6888777777776


Q ss_pred             HHhh
Q 020527          261 HALR  264 (325)
Q Consensus       261 ~~l~  264 (325)
                      ..+.
T Consensus       145 ~~l~  148 (191)
T 1zp6_A          145 ADLG  148 (191)
T ss_dssp             TCCG
T ss_pred             hccC
Confidence            6553

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=99.68  E-value=6e-20  Score=171.58  Aligned_cols=152  Identities=16%  Similarity=0.145  Sum_probs=103.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHHcCC--------CCCCCeEEECCEeCCCCC---------------HHHHhcceEEE---c
Q 020527          109 EVVAIVGLSGSGKSTFVNLLLRLY--------EPSDGQIYIDGFPLTDLD---------------IRWLREKIGFV---G  162 (325)
Q Consensus       109 e~~~iiG~nGsGKSTLl~~l~gl~--------~~~~G~I~i~g~~i~~~~---------------~~~~r~~i~~v---~  162 (325)
                      ++++|+|+||||||||+|.|+|+.        .|+.|+|.+||.++...+               ..++++.++++   +
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~   84 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL   84 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence            589999999999999999999997        789999999999886542               23456678888   6


Q ss_pred             cCCcC-ccccHHHHHhcCCCCCCCHHHHHHH-------HHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 020527          163 QEPQL-LQMDIKSNIMYGCPKDVKNEDIEWA-------AKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR  234 (325)
Q Consensus       163 Q~~~l-~~~tv~enl~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~  234 (325)
                      |++.+ +..++.||..++.+     ..+...       .....+...+...... .......+||+||+||+..+++++.
T Consensus        85 q~~~~~~~~~v~E~~~l~~p-----~~~~~~~~~~~~~~~~~~l~~~l~~vd~~-~~~~~~~~ls~g~~Q~~~ad~ill~  158 (318)
T 1nij_A           85 DKGNIQFDRLVIECTGMADP-----GPIIQTFFSHEVLCQRYLLDGVIALVDAV-HADEQMNQFTIAQSQVGYADRILLT  158 (318)
T ss_dssp             HHTSCCCSEEEEEEETTCCH-----HHHHHHHHHSHHHHHHEEEEEEEEEEETT-THHHHHHHCHHHHHHHHTCSEEEEE
T ss_pred             hcCCCCCCEEEEeCCCCCCH-----HHHHHHHhcCccccCeEEECCEEEEEEHH-HHHHHHhhchHHHHHHHhCCEEEEE
Confidence            87765 47889998876521     111111       1111110000000000 0000001489999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCch
Q 020527          235 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS  281 (325)
Q Consensus       235 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~  281 (325)
                      +|+++  |||         ..+.+.++++.    .+.+|+++||+..
T Consensus       159 k~dl~--de~---------~~l~~~l~~l~----~~~~ii~~sh~~~  190 (318)
T 1nij_A          159 KTDVA--GEA---------EKLHERLARIN----ARAPVYTVTHGDI  190 (318)
T ss_dssp             CTTTC--SCT---------HHHHHHHHHHC----SSSCEEECCSSCC
T ss_pred             CcccC--CHH---------HHHHHHHHHhC----CCCeEEEecccCC
Confidence            99987  998         56778887773    3789999999643

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=99.67  E-value=5.1e-17  Score=144.33  Aligned_cols=147  Identities=18%  Similarity=0.276  Sum_probs=88.6

Q ss_pred             EeeCCcEEEEEcCCCChHHHHHHHHHc--CCCC-----CCCeEEECCEeCCCC-CHHHHhcceEEEccCCcCccccHHHH
Q 020527          104 TIEANEVVAIVGLSGSGKSTFVNLLLR--LYEP-----SDGQIYIDGFPLTDL-DIRWLREKIGFVGQEPQLLQMDIKSN  175 (325)
Q Consensus       104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~g--l~~~-----~~G~I~i~g~~i~~~-~~~~~r~~i~~v~Q~~~l~~~tv~en  175 (325)
                      -|++|++++|+||||||||||++.+++  +.+|     ..|.+++++.+.... ....+.+++++.+|+       +.+|
T Consensus        20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~   92 (243)
T 1n0w_A           20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN   92 (243)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred             CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence            489999999999999999999999999  5665     577888887652110 112233345554432       3444


Q ss_pred             HhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHH-HHHHHHHHc--CCCCEEEEeCCCCCCCHH-
Q 020527          176 IMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ-RIAIARAIL--RDPAILLLDEATSALDSE-  251 (325)
Q Consensus       176 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~Q-Rv~iAral~--~~p~llllDEPts~LD~~-  251 (325)
                      +.+...                                    .+..+.. .+.-++.++  .+|+++++|||++.+|+. 
T Consensus        93 ~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~  136 (243)
T 1n0w_A           93 VAYARA------------------------------------FNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDY  136 (243)
T ss_dssp             EEEEEC------------------------------------CSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC---
T ss_pred             eEEEec------------------------------------CCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHh
Confidence            433211                                    1222211 111111222  689999999999999985 


Q ss_pred             ------H-----HHHHHHHHHHhhccCCCCeEEEEEecCchHH-------------------H-hcCEEEEEeCC
Q 020527          252 ------S-----EHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-------------------K-AVDRIVVIDDG  295 (325)
Q Consensus       252 ------~-----~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~-------------------~-~~d~v~~l~~G  295 (325)
                            .     ...+...|.++.++  .|+|||+++|.....                   . .||.+++|+.|
T Consensus       137 ~~~~~~~~r~~~~~~~~~~l~~~~~~--~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~  209 (243)
T 1n0w_A          137 SGRGELSARQMHLARFLRMLLRLADE--FGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG  209 (243)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHH--HCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred             cCCccHHHHHHHHHHHHHHHHHHHHH--cCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence                  3     23444555555443  488999999965432                   2 48999999865

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.67  E-value=1.9e-20  Score=176.41  Aligned_cols=179  Identities=12%  Similarity=0.117  Sum_probs=118.0

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCC----HHHH
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRWL  154 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~----~~~~  154 (325)
                      .++++|+++.|+.   ..+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++....    ....
T Consensus        29 ~ie~~~~~~~~~~---~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~  105 (337)
T 2qm8_A           29 LAESRRADHRAAV---RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGD  105 (337)
T ss_dssp             HHTCSSHHHHHHH---HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCC
T ss_pred             HHeeCCcccccCh---HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHH
Confidence            4677788888853   25999999999999999999999999999999999999999999999998874321    1224


Q ss_pred             hcceEEEccCCcCccc-------------cHHHHHh-c---CCC--------CCCCHHHHHH---------------HHH
Q 020527          155 REKIGFVGQEPQLLQM-------------DIKSNIM-Y---GCP--------KDVKNEDIEW---------------AAK  194 (325)
Q Consensus       155 r~~i~~v~Q~~~l~~~-------------tv~enl~-~---~~~--------~~~~~~~~~~---------------~~~  194 (325)
                      ++++++++|++.+|..             ++.|.+. +   +..        .......+.+               ..+
T Consensus       106 ~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~  185 (337)
T 2qm8_A          106 KTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQ  185 (337)
T ss_dssp             GGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC-----
T ss_pred             hhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHH
Confidence            6779999999987731             1222220 0   000        0000000000               000


Q ss_pred             H--cCHHHHHHhCCCCcccc-cCCCCCChHHHHHHHHHHHHcC------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc
Q 020527          195 Q--AYVHEFILSLPCGYETL-VDDDLLSGGQKQRIAIARAILR------DPAILLLDEATSALDSESEHYVKGVLHALRN  265 (325)
Q Consensus       195 ~--~~~~~~~~~~~~~~~~~-~~~~~LSgGq~QRv~iAral~~------~p~llllDEPts~LD~~~~~~i~~~l~~l~~  265 (325)
                      .  ..+.+....+.. .... .....+|+|++|++..|++++.      +|+++.    ||++|......+.+.+.++.+
T Consensus       186 ~i~~~i~~~~~ivvl-NK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          186 GIKKGIFELADMIAV-NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             -CCTTHHHHCSEEEE-ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHhccccEEEE-EchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence            0  011111000000 0001 0113478999999999999987      688876    999999999999999988653

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=99.66  E-value=3.4e-18  Score=167.02  Aligned_cols=156  Identities=15%  Similarity=0.167  Sum_probs=104.0

Q ss_pred             eeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCC----HHH--HhcceEEEccCCcCc-cc
Q 020527           98 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRW--LREKIGFVGQEPQLL-QM  170 (325)
Q Consensus        98 L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~----~~~--~r~~i~~v~Q~~~l~-~~  170 (325)
                      -+++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.+.....    ...  .|++|+|++|++.++ ..
T Consensus       283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~  362 (503)
T 2yhs_A          283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS  362 (503)
T ss_dssp             BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred             CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence            46899999999999999999999999999999999999999999887764321    112  367899999998766 57


Q ss_pred             cHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc-CCC-CEEEEeCCCCCC
Q 020527          171 DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL-RDP-AILLLDEATSAL  248 (325)
Q Consensus       171 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~-~~p-~llllDEPts~L  248 (325)
                      ++++|+.++.....+         ..    +++..  |....  ...|-.--+|++.++|++. ..| +++|..+|+++.
T Consensus       363 tV~e~l~~a~~~~~D---------vV----LIDTa--Grl~~--~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq  425 (503)
T 2yhs_A          363 VIFDAIQAAKARNID---------VL----IADTA--GRLQN--KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ  425 (503)
T ss_dssp             HHHHHHHHHHHTTCS---------EE----EECCC--CSCCC--HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTH
T ss_pred             HHHHHHHHHHhcCCC---------EE----EEeCC--Cccch--hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccH
Confidence            999999764211100         00    00100  00000  0011122358889999775 446 466666688886


Q ss_pred             CHHHHHHHHHHHHHhhccCCCCeEEEEEec
Q 020527          249 DSESEHYVKGVLHALRNDCKTKRTVIVIAH  278 (325)
Q Consensus       249 D~~~~~~i~~~l~~l~~~~~~g~tvi~vtH  278 (325)
                      |..      +.++.+.+.  .+.|.+++||
T Consensus       426 ~al------~~ak~f~~~--~~itgvIlTK  447 (503)
T 2yhs_A          426 NAV------SQAKLFHEA--VGLTGITLTK  447 (503)
T ss_dssp             HHH------HHHHHHHHH--TCCSEEEEEC
T ss_pred             HHH------HHHHHHHhh--cCCCEEEEEc
Confidence            654      233344332  3779999999

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.65  E-value=6e-19  Score=158.42  Aligned_cols=139  Identities=17%  Similarity=0.133  Sum_probs=95.9

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHH---cCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHHHHhcCC--
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLL---RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGC--  180 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~---gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~enl~~~~--  180 (325)
                      ++++++|+||||||||||+++|+   |+..|++|+|.++|.+..    ......+++++|+..++ ..++.+++....  
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~  101 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN  101 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence            47999999999999999999999   999999999988876532    12334466677877665 468888885310  


Q ss_pred             ---------CCCCCHHHHHHHHH--HcC------------HHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH-cCCC
Q 020527          181 ---------PKDVKNEDIEWAAK--QAY------------VHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI-LRDP  236 (325)
Q Consensus       181 ---------~~~~~~~~~~~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral-~~~p  236 (325)
                               ..............  ..+            +.....+.         ...|||    |+   ||+ +.+|
T Consensus       102 ~~~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~---------~~~lSg----rv---~al~~~~P  165 (246)
T 2bbw_A          102 RRGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRW---------IHPPSG----RV---YNLDFNPP  165 (246)
T ss_dssp             CTTSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE---------EETTTT----EE---EETTTSCC
T ss_pred             cCCCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCC---------CcCCCC----Cc---cccccCCC
Confidence                     00011111111110  011            11111111         246899    66   788 9999


Q ss_pred             CEEEEe----CCCCCCCHHHHHHHHHHHHHhhc
Q 020527          237 AILLLD----EATSALDSESEHYVKGVLHALRN  265 (325)
Q Consensus       237 ~llllD----EPts~LD~~~~~~i~~~l~~l~~  265 (325)
                      +++++|    |||++||+.+...+.+.+.++.+
T Consensus       166 ~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~  198 (246)
T 2bbw_A          166 HVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD  198 (246)
T ss_dssp             SSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred             cccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence            999999    99999999999999999988864

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=99.65  E-value=7.3e-20  Score=157.55  Aligned_cols=171  Identities=16%  Similarity=0.047  Sum_probs=107.8

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHHHHhcCCCCCCCH
Q 020527          108 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKN  186 (325)
Q Consensus       108 Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~enl~~~~~~~~~~  186 (325)
                      |++++|+||||||||||+++|++   |.+|.++++|.++...      ..+++++|....+ ..++++|+.+..      
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~------   66 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDLT------   66 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHHH------
T ss_pred             CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHHH------
Confidence            68999999999999999999997   6789999988654321      2467777766433 468888875420      


Q ss_pred             HHHHHHHHHcCHHHHHHhCCCCcccccCCCCC--ChHHHHHHHHHH------HHcCCCCEEEEeCCCCCCCHHHHHHHHH
Q 020527          187 EDIEWAAKQAYVHEFILSLPCGYETLVDDDLL--SGGQKQRIAIAR------AILRDPAILLLDEATSALDSESEHYVKG  258 (325)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L--SgGq~QRv~iAr------al~~~p~llllDEPts~LD~~~~~~i~~  258 (325)
                         ...... +...+++.. ...........+  |+|++|++.++.      +++.+|+...+|+   ++|+..... .+
T Consensus        67 ---~~~~~~-~~~~ild~~-~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~  137 (189)
T 2bdt_A           67 ---VNFLLA-QNDVVLDYI-AFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VE  137 (189)
T ss_dssp             ---HHHHHT-TCEEEEESC-CCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HH
T ss_pred             ---HHHHhc-CCcEEEeec-cCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HH
Confidence               000000 000000000 000000000124  888888888888      8888888887884   899988777 77


Q ss_pred             HHHHhhccCCCCeEEEEEecC-chHHHh-cCEEEEEeCCEEEEEcChHHHh
Q 020527          259 VLHALRNDCKTKRTVIVIAHR-LSTIKA-VDRIVVIDDGRIIEVGNHAELL  307 (325)
Q Consensus       259 ~l~~l~~~~~~g~tvi~vtH~-~~~~~~-~d~v~~l~~G~i~~~g~~~~l~  307 (325)
                      .+..+.+   .+.++|.+||. ++.++. ||+|+  ++|+++..|+++-+-
T Consensus       138 ~~~~~~~---~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~  183 (189)
T 2bdt_A          138 EFESKGI---DERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE  183 (189)
T ss_dssp             HHHHTTC---CTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred             HHhhcCC---CccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence            7777743   36799999998 998865 99998  999999999887653

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.64  E-value=5e-18  Score=142.91  Aligned_cols=89  Identities=13%  Similarity=0.066  Sum_probs=72.8

Q ss_pred             EEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 020527           81 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF  160 (325)
Q Consensus        81 ~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~  160 (325)
                      +.+|+++.|++   ..+++++||+|++|++++|+||||||||||+|+|+|++ |++|+|.++|.++...  ...+ +  +
T Consensus         9 ~~~~~~~~~g~---~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~-~--~   79 (158)
T 1htw_A            9 PDEFSMLRFGK---KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA-G--K   79 (158)
T ss_dssp             CSHHHHHHHHH---HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET-T--E
T ss_pred             CCHHHHHHHHH---HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC-C--c
Confidence            34456777754   35899999999999999999999999999999999999 9999999999876421  1111 2  7


Q ss_pred             EccCCcCccccHHHHHhc
Q 020527          161 VGQEPQLLQMDIKSNIMY  178 (325)
Q Consensus       161 v~Q~~~l~~~tv~enl~~  178 (325)
                      ++|++.+|..|+.||+.+
T Consensus        80 ~~q~~~l~~ltv~e~l~~   97 (158)
T 1htw_A           80 MIYHFDLYRLADPEELEF   97 (158)
T ss_dssp             EEEEEECTTCSCTTHHHH
T ss_pred             ceeccccccCCcHHHHHH
Confidence            999988888899999853

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=99.61  E-value=2.9e-17  Score=153.89  Aligned_cols=166  Identities=14%  Similarity=0.042  Sum_probs=110.5

Q ss_pred             EeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHH----HHhc--ceEEEccCCcCc-cccHHHHH
Q 020527          104 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR----WLRE--KIGFVGQEPQLL-QMDIKSNI  176 (325)
Q Consensus       104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~----~~r~--~i~~v~Q~~~l~-~~tv~enl  176 (325)
                      ..++|++++|+||||||||||++.|+|+++|++|+|.+.|.++......    .+++  .+.+++|.+.++ ..++++|+
T Consensus       125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l  204 (328)
T 3e70_C          125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI  204 (328)
T ss_dssp             SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence            3478999999999999999999999999999999999999998665432    2233  466999998887 57999999


Q ss_pred             hcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHH
Q 020527          177 MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV  256 (325)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i  256 (325)
                      .++..            ..... -+++..+  ..     ..-..=..+.-.++|++..+++++++|.++. .      .+
T Consensus       205 ~~~~~------------~~~d~-vliDtaG--~~-----~~~~~l~~eL~~i~ral~~de~llvLDa~t~-~------~~  257 (328)
T 3e70_C          205 QHAKA------------RGIDV-VLIDTAG--RS-----ETNRNLMDEMKKIARVTKPNLVIFVGDALAG-N------AI  257 (328)
T ss_dssp             HHHHH------------HTCSE-EEEEECC--SC-----CTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-T------HH
T ss_pred             HHHHh------------ccchh-hHHhhcc--ch-----hHHHHHHHHHHHHHHHhcCCCCEEEEecHHH-H------HH
Confidence            76410            00000 0011111  00     0011122344459999999999999996654 3      33


Q ss_pred             HHHHHHhhccCCCCeEEEEEecCchH---------HHh-cCEEEEEeCCEEE
Q 020527          257 KGVLHALRNDCKTKRTVIVIAHRLST---------IKA-VDRIVVIDDGRII  298 (325)
Q Consensus       257 ~~~l~~l~~~~~~g~tvi~vtH~~~~---------~~~-~d~v~~l~~G~i~  298 (325)
                      .+.++.+.+.  .+.|+|++||.-+.         +.. .-.|.++..|+-+
T Consensus       258 ~~~~~~~~~~--~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v  307 (328)
T 3e70_C          258 VEQARQFNEA--VKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY  307 (328)
T ss_dssp             HHHHHHHHHH--SCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred             HHHHHHHHHh--cCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence            4455555432  37899999994321         222 4578888888754

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=99.60  E-value=5.6e-16  Score=148.81  Aligned_cols=148  Identities=14%  Similarity=0.205  Sum_probs=95.0

Q ss_pred             EeeCCcEEEEEcCCCChHHHHHHH--HHcCCCCCCC-----eEEECCEeCCC-CCHHHHhcceEEEccCCcCccccHHHH
Q 020527          104 TIEANEVVAIVGLSGSGKSTFVNL--LLRLYEPSDG-----QIYIDGFPLTD-LDIRWLREKIGFVGQEPQLLQMDIKSN  175 (325)
Q Consensus       104 ~i~~Ge~~~iiG~nGsGKSTLl~~--l~gl~~~~~G-----~I~i~g~~i~~-~~~~~~r~~i~~v~Q~~~l~~~tv~en  175 (325)
                      -|++|++++|+||||||||||++.  +.++.+++.|     .++|++.+... .....+++++++.+|       ++.+|
T Consensus       174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen  246 (400)
T 3lda_A          174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN  246 (400)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred             CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence            589999999999999999999994  4577776544     88888865311 111223445555444       56677


Q ss_pred             HhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH--cCCCCEEEEeCCCCCCCHHHH
Q 020527          176 IMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI--LRDPAILLLDEATSALDSESE  253 (325)
Q Consensus       176 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral--~~~p~llllDEPts~LD~~~~  253 (325)
                      +.+...  ...+.                                 +.+.+.-++.+  ..+|+++++|||++.+|+...
T Consensus       247 i~~~~~--~~~~~---------------------------------~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~s  291 (400)
T 3lda_A          247 VAYARA--YNADH---------------------------------QLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFS  291 (400)
T ss_dssp             EEEEEC--CSHHH---------------------------------HHHHHHHHHHHHHHSCEEEEEEETGGGGCC----
T ss_pred             EEEecc--CChHH---------------------------------HHHHHHHHHHHHHhcCCceEEecchhhhCchhhc
Confidence            665421  11111                                 11111111121  257999999999999997543


Q ss_pred             ------------HHHHHHHHHhhccCCCCeEEEEEecCc-------------------hHHHh-cCEEEEEeCC
Q 020527          254 ------------HYVKGVLHALRNDCKTKRTVIVIAHRL-------------------STIKA-VDRIVVIDDG  295 (325)
Q Consensus       254 ------------~~i~~~l~~l~~~~~~g~tvi~vtH~~-------------------~~~~~-~d~v~~l~~G  295 (325)
                                  .++++.|++++++  .|.|||+++|..                   ..+.. +|.+++|+++
T Consensus       292 g~g~l~~Rq~~l~~il~~L~~lake--~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~  363 (400)
T 3lda_A          292 GRGELSARQMHLAKFMRALQRLADQ--FGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG  363 (400)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHH--HCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred             CccchHHHHHHHHHHHHHHHHHHHH--cCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence                        5577778877654  489999999982                   22344 8999999876

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=99.60  E-value=5.2e-18  Score=156.49  Aligned_cols=131  Identities=13%  Similarity=0.099  Sum_probs=87.0

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCC--
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD--  183 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~--  183 (325)
                      +++.+++|+|++|||||||.+.|.+++++. |      .        . ++.+.+|+|+.++++.++++|+.++.+..  
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l   92 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKL   92 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccch
Confidence            457899999999999999999999999763 2      0        1 34566669999988889999987642100  


Q ss_pred             CCHHHHHHHHHHcCHHHHHHhCCCCcccc------cC--CCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHH
Q 020527          184 VKNEDIEWAAKQAYVHEFILSLPCGYETL------VD--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES  252 (325)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~  252 (325)
                      ........+.+...+.+++..++.++++.      .+  ...+||||+||+++|++...+|+|+|+||||+++|+..
T Consensus        93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~~  169 (290)
T 1odf_A           93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPIL  169 (290)
T ss_dssp             GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCC
T ss_pred             hhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCccc
Confidence            00000000111223345566666564321      22  35799999999999843333999999999999999853

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=99.57  E-value=9.5e-17  Score=151.68  Aligned_cols=122  Identities=17%  Similarity=0.120  Sum_probs=77.0

Q ss_pred             CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC-CCCCeEEEC-CEeCCCCCHHHHhcceEEEccCCcCc-cccH
Q 020527           96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-PSDGQIYID-GFPLTDLDIRWLREKIGFVGQEPQLL-QMDI  172 (325)
Q Consensus        96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~-~~~G~I~i~-g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv  172 (325)
                      .-++++++. .+|++++|+||||||||||+++|+|+.+ |.+|+|.++ |....    ...++.++++||++.++ ..++
T Consensus       204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv  278 (358)
T 2rcn_A          204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGV  278 (358)
T ss_dssp             BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHH
T ss_pred             cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccH
Confidence            357788875 4799999999999999999999999999 999999987 75532    12356799999998887 4688


Q ss_pred             HHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 020527          173 KSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI  232 (325)
Q Consensus       173 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral  232 (325)
                      +++...    ....+.+..     .+.++++.+...........+|| ||+||++||+++
T Consensus       279 ~e~~l~----~l~~~e~~~-----~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl  328 (358)
T 2rcn_A          279 REFGLW----HLEPEQITQ-----GFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA  328 (358)
T ss_dssp             HTCCCC----CCCHHHHHH-----TSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred             HHhhhc----CCCHHHHHH-----HHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence            885322    222322211     22233333322111122235799 999999999875

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=99.57  E-value=6.7e-15  Score=140.05  Aligned_cols=74  Identities=27%  Similarity=0.447  Sum_probs=65.6

Q ss_pred             CCCChHHHHHH------HHHHHHcCC-CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCE
Q 020527          216 DLLSGGQKQRI------AIARAILRD-PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDR  288 (325)
Q Consensus       216 ~~LSgGq~QRv------~iAral~~~-p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~  288 (325)
                      ..|||||+||+      ++||+++.+ |++|||||||++||+..+..+.+.|.++.+    +.+||++||+++....||+
T Consensus       279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~----~~~vi~~th~~~~~~~~d~  354 (371)
T 3auy_A          279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS----IPQMIIITHHRELEDVADV  354 (371)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS----CSEEEEEESCGGGGGGCSE
T ss_pred             HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc----CCeEEEEEChHHHHhhCCE
Confidence            46999999988      567999999 999999999999999999999999988732    4589999999986566999


Q ss_pred             EEEEe
Q 020527          289 IVVID  293 (325)
Q Consensus       289 v~~l~  293 (325)
                      +++|+
T Consensus       355 ~~~l~  359 (371)
T 3auy_A          355 IINVK  359 (371)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99997

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=99.55  E-value=6.1e-16  Score=131.94  Aligned_cols=112  Identities=17%  Similarity=0.167  Sum_probs=75.2

Q ss_pred             eEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCC
Q 020527          102 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP  181 (325)
Q Consensus       102 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~  181 (325)
                      +|++++|+.++|+||||||||||++++++.+.|.+|..                  +.|         .+..+.+.    
T Consensus        32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~------------------~~~---------~~~~~~~~----   80 (180)
T 3ec2_A           32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR------------------GYF---------FDTKDLIF----   80 (180)
T ss_dssp             SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC------------------CCE---------EEHHHHHH----
T ss_pred             hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe------------------EEE---------EEHHHHHH----
Confidence            45678899999999999999999999999987766621                  001         11222110    


Q ss_pred             CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCC-CCCHHHHHHHHHHH
Q 020527          182 KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATS-ALDSESEHYVKGVL  260 (325)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts-~LD~~~~~~i~~~l  260 (325)
                            .+...         ....           ...        -+...+.+|++|++|||++ ++|+..+..+.+++
T Consensus        81 ------~~~~~---------~~~~-----------~~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll  126 (180)
T 3ec2_A           81 ------RLKHL---------MDEG-----------KDT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYII  126 (180)
T ss_dssp             ------HHHHH---------HHHT-----------CCS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHH
T ss_pred             ------HHHHH---------hcCc-----------hHH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHH
Confidence                  00000         0000           011        0112234999999999995 99999999999999


Q ss_pred             HHhhccCCCCeEEEEEecCch
Q 020527          261 HALRNDCKTKRTVIVIAHRLS  281 (325)
Q Consensus       261 ~~l~~~~~~g~tvi~vtH~~~  281 (325)
                      ....+   .|+++|++||...
T Consensus       127 ~~~~~---~~~~ii~tsn~~~  144 (180)
T 3ec2_A          127 TYRYN---NLKSTIITTNYSL  144 (180)
T ss_dssp             HHHHH---TTCEEEEECCCCS
T ss_pred             HHHHH---cCCCEEEEcCCCh
Confidence            88754   3789999999763

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.55  E-value=6e-15  Score=138.48  Aligned_cols=138  Identities=18%  Similarity=0.221  Sum_probs=77.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHc-CCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHHHHhcCCCCCCCHH
Q 020527          110 VVAIVGLSGSGKSTFVNLLLR-LYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNE  187 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~g-l~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~enl~~~~~~~~~~~  187 (325)
                      .+.|.||||+|||||++++++ ++.|+.|.+.++|.++...  ...+..+++++|.+.+. ..+-     .+   .....
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-----~~---~~~~~  107 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTA--SNRKLELNVVSSPYHLEITPSD-----MG---NNDRI  107 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC------------CCHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccc--ccccceeeeecccceEEecHhh-----cC---CcchH
Confidence            389999999999999999999 8999999999999876432  22256789999987542 2110     01   01111


Q ss_pred             HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccC
Q 020527          188 DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC  267 (325)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~  267 (325)
                      .+.+..+     ++....+.  ...   ..|||           +..+|+++|+|||++ ||+.+...+++.+.+..   
T Consensus       108 ~~~~~i~-----~~~~~~~~--~~~---~~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~---  162 (354)
T 1sxj_E          108 VIQELLK-----EVAQMEQV--DFQ---DSKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS---  162 (354)
T ss_dssp             HHHHHHH-----HHTTTTC----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST---
T ss_pred             HHHHHHH-----HHHHhccc--ccc---ccccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc---
Confidence            1222111     11111110  000   03566           778999999999999 99999999999998863   


Q ss_pred             CCCeEEEEEecCchHH
Q 020527          268 KTKRTVIVIAHRLSTI  283 (325)
Q Consensus       268 ~~g~tvi~vtH~~~~~  283 (325)
                       .+.++|++||+++.+
T Consensus       163 -~~~~~Il~t~~~~~l  177 (354)
T 1sxj_E          163 -KNIRLIMVCDSMSPI  177 (354)
T ss_dssp             -TTEEEEEEESCSCSS
T ss_pred             -CCCEEEEEeCCHHHH
Confidence             368999999998643

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.54  E-value=6e-16  Score=143.43  Aligned_cols=115  Identities=17%  Similarity=0.133  Sum_probs=78.4

Q ss_pred             EeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEE---CCEeCCCCCHHHHh-cceEEEccCCcC------ccccHH
Q 020527          104 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI---DGFPLTDLDIRWLR-EKIGFVGQEPQL------LQMDIK  173 (325)
Q Consensus       104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i---~g~~i~~~~~~~~r-~~i~~v~Q~~~l------~~~tv~  173 (325)
                      ++.+|++++|+||||||||||+|+|+ +.+|++|+|.+   +|+++..... ..+ +.+||++|+|.+      ...|+ 
T Consensus       161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~-  237 (302)
T 2yv5_A          161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP-  237 (302)
T ss_dssp             HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred             hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH-
Confidence            45679999999999999999999999 99999999999   9988765322 222 369999999854      24688 


Q ss_pred             HHH--hcC--------C----CCCCCHHHHHHHHHHcCHHH-HHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527          174 SNI--MYG--------C----PKDVKNEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQKQRIAIAR  230 (325)
Q Consensus       174 enl--~~~--------~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr  230 (325)
                      ||+  .|+        .    ........+.++++..++.+ ..++.+         ..|||.+++++.|||
T Consensus       238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~---------~~ls~~~~R~~~~~~  300 (302)
T 2yv5_A          238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL---------KIIKVYLEEIKELCR  300 (302)
T ss_dssp             GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH---------HHTTCCCTTHHHHSS
T ss_pred             HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH---------HHHHHHHHHHHHHhc
Confidence            887  443        0    11112344666777777654 444443         458998899999987

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.53  E-value=7.7e-15  Score=122.08  Aligned_cols=92  Identities=18%  Similarity=0.320  Sum_probs=69.7

Q ss_pred             ceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCC--eEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHH
Q 020527           97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG--QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS  174 (325)
Q Consensus        97 iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G--~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~e  174 (325)
                      +|+++     +|+.++|+||||||||||++++++.+.+ +|  .+++++.++...                         
T Consensus        30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~-------------------------   78 (149)
T 2kjq_A           30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT-------------------------   78 (149)
T ss_dssp             HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------
T ss_pred             HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------
Confidence            55555     8999999999999999999999999886 46  444443221100                         


Q ss_pred             HHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHH
Q 020527          175 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH  254 (325)
Q Consensus       175 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~  254 (325)
                                                                              +++.+|++|++|||++ +|...++
T Consensus        79 --------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~  101 (149)
T 2kjq_A           79 --------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQA  101 (149)
T ss_dssp             --------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHHH
T ss_pred             --------------------------------------------------------HHHhCCCEEEEeCccc-cChHHHH
Confidence                                                                    2356899999999998 6666688


Q ss_pred             HHHHHHHHhhccCCCCeE-EEEEecC
Q 020527          255 YVKGVLHALRNDCKTKRT-VIVIAHR  279 (325)
Q Consensus       255 ~i~~~l~~l~~~~~~g~t-vi~vtH~  279 (325)
                      .+++++..+.++   |++ +|++||.
T Consensus       102 ~l~~li~~~~~~---g~~~iiits~~  124 (149)
T 2kjq_A          102 LLFSIFNRFRNS---GKGFLLLGSEY  124 (149)
T ss_dssp             HHHHHHHHHHHH---TCCEEEEEESS
T ss_pred             HHHHHHHHHHHc---CCcEEEEECCC
Confidence            899999887653   667 8888884

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=99.51  E-value=2.7e-17  Score=162.65  Aligned_cols=174  Identities=15%  Similarity=0.173  Sum_probs=110.2

Q ss_pred             CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHH
Q 020527           96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKS  174 (325)
Q Consensus        96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~e  174 (325)
                      .+++++++.+++|+.++|+||||||||||+++|+|+++|++|.|.++|.+--..+   -...+++..|..... ..|..+
T Consensus       248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~---~~~~v~~~~r~~~~~~~~~~~~  324 (511)
T 2oap_1          248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLY---HENWIAEVTRTGMGEGEIDMYD  324 (511)
T ss_dssp             HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCC---CSSEEEEECBCCSSSCCBCHHH
T ss_pred             HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCC---CCCeEEEEeecccccCCcCHHH
Confidence            4788999999999999999999999999999999999999999999886522221   134567777654422 246666


Q ss_pred             HHhcCCC--------CCCCHHHHHHHHHHc-------------CHHHHHHhCC---CCcccc----cC-----CCCCChH
Q 020527          175 NIMYGCP--------KDVKNEDIEWAAKQA-------------YVHEFILSLP---CGYETL----VD-----DDLLSGG  221 (325)
Q Consensus       175 nl~~~~~--------~~~~~~~~~~~~~~~-------------~~~~~~~~~~---~~~~~~----~~-----~~~LSgG  221 (325)
                      ++.....        ......+...+....             ...+.+.++.   .+....    +.     ...+|+|
T Consensus       325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G  404 (511)
T 2oap_1          325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGN  404 (511)
T ss_dssp             HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSS
T ss_pred             HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCC
Confidence            6532210        011111222222211             1233333321   111110    01     1247999


Q ss_pred             HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEE--EecCchHHHh-cC
Q 020527          222 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIV--IAHRLSTIKA-VD  287 (325)
Q Consensus       222 q~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~--vtH~~~~~~~-~d  287 (325)
                      |+||.++|.          + | |+|||+.....+.+.+.++.+   .+.|+++  +||+++.+.. |+
T Consensus       405 ~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~---~~~tii~~~~sH~l~ei~~~~g  458 (511)
T 2oap_1          405 TRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDP---KEDKHIEVSMPKKLEKMADFLG  458 (511)
T ss_dssp             CEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEET---TTTEEEECSCCTHHHHHHHHHT
T ss_pred             CceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcc---cCCEEEEcccHHHHHHHHHHcC
Confidence            999987751          1 7 999999877666666666643   4778875  8999998864 64

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=99.50  E-value=7.9e-17  Score=155.57  Aligned_cols=129  Identities=16%  Similarity=0.178  Sum_probs=87.3

Q ss_pred             ceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCC-C---HHHHhcceEEEc---------c
Q 020527           97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL-D---IRWLREKIGFVG---------Q  163 (325)
Q Consensus        97 iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~-~---~~~~r~~i~~v~---------Q  163 (325)
                      +|+++ + .++|++++|+||||||||||+++|+|+++|++|+|.+.+.++... +   ...+++++++.|         |
T Consensus       158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq  235 (418)
T 1p9r_A          158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ  235 (418)
T ss_dssp             HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred             HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence            45555 3 378999999999999999999999999999999999998876421 1   112344566655         9


Q ss_pred             CCcCc---c----ccHHHHHhcCCC--------CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 020527          164 EPQLL---Q----MDIKSNIMYGCP--------KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI  228 (325)
Q Consensus       164 ~~~l~---~----~tv~enl~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i  228 (325)
                      +|.++   .    .|+.+++.++..        ...........+...++....           ....|||||+||  |
T Consensus       236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~-----------~~~~LSgg~~QR--L  302 (418)
T 1p9r_A          236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL-----------ISSSLLGVLAQR--L  302 (418)
T ss_dssp             CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH-----------HHHHEEEEEEEE--E
T ss_pred             CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH-----------HHHHHHHHHHHH--h
Confidence            88653   2    488998865310        011112222233333333221           114599999999  9


Q ss_pred             HHHHcCCCCEEE
Q 020527          229 ARAILRDPAILL  240 (325)
Q Consensus       229 Aral~~~p~lll  240 (325)
                      ||+|+.+|++..
T Consensus       303 araL~~~p~~~~  314 (418)
T 1p9r_A          303 VRTLCPDCKEPY  314 (418)
T ss_dssp             EEEECTTTCEEE
T ss_pred             hhhhcCCCCccC
Confidence            999999999875

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=99.50  E-value=1.2e-17  Score=152.72  Aligned_cols=129  Identities=17%  Similarity=0.172  Sum_probs=93.1

Q ss_pred             CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCC-cCc-cccHH
Q 020527           96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEP-QLL-QMDIK  173 (325)
Q Consensus        96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~-~l~-~~tv~  173 (325)
                      .+++++++++++|  ++|+||||||||||+++|+|...+  |.|.++|.++........++.++++||.+ ..+ ..++.
T Consensus        34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~  109 (274)
T 2x8a_A           34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF  109 (274)
T ss_dssp             HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence            4889999999999  999999999999999999999876  79999998876544445566799999986 333 46778


Q ss_pred             HHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCC
Q 020527          174 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATS  246 (325)
Q Consensus       174 enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts  246 (325)
                      |++....... ..... ..     ......++.         .+|||||+||+.+++|+.++|++|  |||+.
T Consensus       110 Deid~~~~~r-~~~~~-~~-----~~~~~~~~l---------~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~  164 (274)
T 2x8a_A          110 DEVDALCPRR-SDRET-GA-----SVRVVNQLL---------TEMDGLEARQQVFIMAATNRPDII--DPAIL  164 (274)
T ss_dssp             ETCTTTCC----------------CTTHHHHHH---------HHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred             ehhhhhhccc-CCCcc-hH-----HHHHHHHHH---------HhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence            8876532211 11000 00     011111111         248999999999999999999985  99975

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=99.49  E-value=6.9e-17  Score=141.40  Aligned_cols=141  Identities=18%  Similarity=0.146  Sum_probs=83.3

Q ss_pred             eeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhc----CC
Q 020527          105 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMY----GC  180 (325)
Q Consensus       105 i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~----~~  180 (325)
                      .++|++++|+||||||||||+++|+|+++|+ |                  ..+++++++...+..+..+|+..    +.
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~   79 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA   79 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence            4789999999999999999999999999875 4                  23566666665554444444321    10


Q ss_pred             CCCCCHHHHHHHHHHcCHHHHHHhCCCCccccc--CCCCCChHHHHHHHHH-HHHcCCCCEEEEeCCCCCCCHHHHHHHH
Q 020527          181 PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLV--DDDLLSGGQKQRIAIA-RAILRDPAILLLDEATSALDSESEHYVK  257 (325)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~LSgGq~QRv~iA-ral~~~p~llllDEPts~LD~~~~~~i~  257 (325)
                      +...........+.     .+...  .......  ....+|+||+||+++| ++++.++.++++|||.-           
T Consensus        80 ~~~~~~~~~~~~l~-----~l~~~--~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------  141 (208)
T 3c8u_A           80 PETFDFEGFQRLCH-----ALKHQ--ERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------  141 (208)
T ss_dssp             GGGBCHHHHHHHHH-----HHHHC--SCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------
T ss_pred             CchhhHHHHHHHHH-----HHhcC--CceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchh-----------
Confidence            00011111111111     11111  0111111  1235899999999998 88888888888888731           


Q ss_pred             HHHHHhhccCCCCeEEEEEecCchH-HHh-cCE
Q 020527          258 GVLHALRNDCKTKRTVIVIAHRLST-IKA-VDR  288 (325)
Q Consensus       258 ~~l~~l~~~~~~g~tvi~vtH~~~~-~~~-~d~  288 (325)
                         .++.+.  . -.+++++++.+. +.+ +.|
T Consensus       142 ---~~l~~~--~-d~~i~vd~~~~~~~~R~~~R  168 (208)
T 3c8u_A          142 ---RDLTAI--W-DVSIRLEVPMADLEARLVQR  168 (208)
T ss_dssp             ---GGGGGT--C-SEEEEECCCHHHHHHHHHHH
T ss_pred             ---HHHHHh--c-CEEEEEeCCHHHHHHHHHHH
Confidence               111111  1 267888888876 333 555

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.44  E-value=5.6e-15  Score=136.76  Aligned_cols=103  Identities=15%  Similarity=0.122  Sum_probs=67.4

Q ss_pred             EEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEE---CCEeCCCCCHHHHhcceEEEccCCc-------------
Q 020527          103 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI---DGFPLTDLDIRWLREKIGFVGQEPQ-------------  166 (325)
Q Consensus       103 l~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i---~g~~i~~~~~~~~r~~i~~v~Q~~~-------------  166 (325)
                      |++.+|++++|+||||||||||+|+|+|+.+|++|+|.+   +|+++.........+.+||++|.|.             
T Consensus       164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~  243 (301)
T 1u0l_A          164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE  243 (301)
T ss_dssp             HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred             HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence            456789999999999999999999999999999999999   8988765432111246899999984             


Q ss_pred             ---Cc-cccHHHHHhcCCCC--CCCHHHHHHHHHHcCH-HHHHHhCC
Q 020527          167 ---LL-QMDIKSNIMYGCPK--DVKNEDIEWAAKQAYV-HEFILSLP  206 (325)
Q Consensus       167 ---l~-~~tv~enl~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~  206 (325)
                         +| ..|+ +|+.|+...  ......+.++++..++ .+..++.|
T Consensus       244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~  289 (301)
T 1u0l_A          244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYV  289 (301)
T ss_dssp             HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred             HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence               34 4688 898875321  2223456778888887 45555554

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.44  E-value=5e-15  Score=142.84  Aligned_cols=156  Identities=19%  Similarity=0.173  Sum_probs=93.5

Q ss_pred             eeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHh
Q 020527           98 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIM  177 (325)
Q Consensus        98 L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~  177 (325)
                      -++++|+++.|+.++|+|+||||||||+++|+|..+      .+.+.+...+     ...+++++++.. ...++.|+..
T Consensus       147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl-----~p~~G~V~~~~~-~~~~l~DtpG  214 (416)
T 1udx_A          147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTL-----SPNLGVVEVSEE-ERFTLADIPG  214 (416)
T ss_dssp             EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSS-----CCEEEEEECSSS-CEEEEEECCC
T ss_pred             EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCccccee-----cceeeEEEecCc-ceEEEEeccc
Confidence            479999999999999999999999999999999854      3445444332     345778877641 1122333221


Q ss_pred             cCC----CCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHH
Q 020527          178 YGC----PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE  253 (325)
Q Consensus       178 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~  253 (325)
                      +..    ......... ...+.  .+.++..+...   .....+||+|++|++++|++|+.+|.++++    +.+|+...
T Consensus       215 li~~a~~~~~L~~~fl-~~~er--a~~lL~vvDls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~  284 (416)
T 1udx_A          215 IIEGASEGKGLGLEFL-RHIAR--TRVLLYVLDAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE  284 (416)
T ss_dssp             CCCCGGGSCCSCHHHH-HHHTS--SSEEEEEEETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH
T ss_pred             cccchhhhhhhhHHHH-HHHHH--HHhhhEEeCCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH
Confidence            100    001111111 11110  00011111000   001135899999999999999999999999    99999876


Q ss_pred             HHHHHHHHHhhccCCCCeEEEEEec
Q 020527          254 HYVKGVLHALRNDCKTKRTVIVIAH  278 (325)
Q Consensus       254 ~~i~~~l~~l~~~~~~g~tvi~vtH  278 (325)
                       ...+.+.+..++  .+.+++++|.
T Consensus       285 -~~~~~l~~~l~~--~g~~vi~iSA  306 (416)
T 1udx_A          285 -EAVKALADALAR--EGLAVLPVSA  306 (416)
T ss_dssp             -HHHHHHHHHHHT--TTSCEEECCT
T ss_pred             -HHHHHHHHHHHh--cCCeEEEEEC
Confidence             334444443322  3667777663

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=99.34  E-value=8.1e-15  Score=136.09  Aligned_cols=137  Identities=18%  Similarity=0.221  Sum_probs=96.1

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEe-------------------eCCcEEEEEcCCCChHHHHHHHHHcCCC--CCCC
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTI-------------------EANEVVAIVGLSGSGKSTFVNLLLRLYE--PSDG  137 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i-------------------~~Ge~~~iiG~nGsGKSTLl~~l~gl~~--~~~G  137 (325)
                      .|+++||++.|.     ++++++|+.+                   ++|+++||+||||||||||+++|+|+++  |++|
T Consensus        37 ~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G  111 (308)
T 1sq5_A           37 DLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHR  111 (308)
T ss_dssp             TCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCC
T ss_pred             ccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCC
Confidence            589999999993     4899999988                   8999999999999999999999999998  9999


Q ss_pred             eEEE---CCEeCCCCCHHHHhcceEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcc-cc
Q 020527          138 QIYI---DGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE-TL  212 (325)
Q Consensus       138 ~I~i---~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  212 (325)
                      +|.+   ||....   . ..++.++++ |...++ ..++.+|+.+...           +.  .          +.. ..
T Consensus       112 ~i~vi~~d~~~~~---~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~-----------l~--~----------~~~~i~  163 (308)
T 1sq5_A          112 RVELITTDGFLHP---N-QVLKERGLM-KKKGFPESYDMHRLVKFVSD-----------LK--S----------GVPNVT  163 (308)
T ss_dssp             CEEEEEGGGGBCC---H-HHHHHHTCT-TCTTSGGGBCHHHHHHHHHH-----------HT--T----------TCSCEE
T ss_pred             eEEEEecCCccCc---H-HHHHhCCEe-ecCCCCCCccHHHHHHHHHH-----------Hh--C----------CCCcee
Confidence            9999   887642   2 235568888 776665 5688888754200           00  0          000 00


Q ss_pred             cCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCH
Q 020527          213 VDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS  250 (325)
Q Consensus       213 ~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~  250 (325)
                      ......+.+  +|+..+.+.+.+|+++|+|.|....+.
T Consensus       164 ~P~~~~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~  199 (308)
T 1sq5_A          164 APVYSHLIY--DVIPDGDKTVVQPDILILEGLNVLQSG  199 (308)
T ss_dssp             ECCEETTTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred             ccccccccc--CcccccceecCCCCEEEECchhhCCCc
Confidence            000011222  333333345678999999999988773

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=99.33  E-value=5e-13  Score=130.72  Aligned_cols=52  Identities=15%  Similarity=0.119  Sum_probs=49.5

Q ss_pred             CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCC
Q 020527           96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD  148 (325)
Q Consensus        96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~  148 (325)
                      .+|+++||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus        18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~   69 (483)
T 3euj_A           18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAG   69 (483)
T ss_dssp             TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCS
T ss_pred             ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEccc
Confidence            489999999999 9999999999999999999999999999999999988764

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=99.32  E-value=1.9e-16  Score=148.67  Aligned_cols=176  Identities=14%  Similarity=0.175  Sum_probs=108.9

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCC-------cEEEEEcCCCChHHHHHHHHHcCC----CCCCCeEEECCEeCCC
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEAN-------EVVAIVGLSGSGKSTFVNLLLRLY----EPSDGQIYIDGFPLTD  148 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~G-------e~~~iiG~nGsGKSTLl~~l~gl~----~~~~G~I~i~g~~i~~  148 (325)
                      ++.++++..|++.   .+++++++.+++|       +.++|+||||+|||||+++|+|.+    .+.+|.+..++.++..
T Consensus        19 lr~~~l~~~~g~~---~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~   95 (334)
T 1in4_A           19 LRPKSLDEFIGQE---NVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAA   95 (334)
T ss_dssp             TSCSSGGGCCSCH---HHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHH
T ss_pred             cCCccHHHccCcH---HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHH
Confidence            4555666667542   5899999999877       899999999999999999999998    6778877766554421


Q ss_pred             CCHHHHhcceEEEccCCcCccccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHH
Q 020527          149 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK  223 (325)
Q Consensus       149 ~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~  223 (325)
                      ......+..|.+++|...++. ++.|++..... ....    ...   ..+  .+...+..+..-. .......||+|++
T Consensus        96 ~~~~~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~---~~~--~i~~~l~~~~li~-at~~~~~Ls~~l~  168 (334)
T 1in4_A           96 ILTSLERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGP---SAK--SIRIDIQPFTLVG-ATTRSGLLSSPLR  168 (334)
T ss_dssp             HHHHCCTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC--------------------CCCEEEE-EESCGGGSCHHHH
T ss_pred             HHHHccCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCc---ccc--cccccCCCeEEEE-ecCCcccCCHHHH
Confidence            101111456999999877665 77777742100 0000    000   000  0111111111100 1111246999999


Q ss_pred             HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCE
Q 020527          224 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDR  288 (325)
Q Consensus       224 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~  288 (325)
                      ||++++                .+||+.+...+.+++++..+.  .+     ++|+.+.+.. |++
T Consensus       169 sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~--~~-----~~~~~~~~~~ia~~  211 (334)
T 1in4_A          169 SRFGII----------------LELDFYTVKELKEIIKRAASL--MD-----VEIEDAAAEMIAKR  211 (334)
T ss_dssp             TTCSEE----------------EECCCCCHHHHHHHHHHHHHH--TT-----CCBCHHHHHHHHHT
T ss_pred             HhcCce----------------eeCCCCCHHHHHHHHHHHHHH--cC-----CCcCHHHHHHHHHh
Confidence            998655                788998888999999887653  23     3677776543 443

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=99.31  E-value=2e-13  Score=118.10  Aligned_cols=72  Identities=17%  Similarity=0.174  Sum_probs=55.7

Q ss_pred             eEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHHHHh
Q 020527          102 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIM  177 (325)
Q Consensus       102 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~enl~  177 (325)
                      |+++++|++++|+||||||||||+++|+|+++    .+.+++..+........+..++|+||++..| ..++.+|+.
T Consensus         1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (205)
T 3tr0_A            1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL   73 (205)
T ss_dssp             ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred             CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence            57788999999999999999999999999974    6888887776544333466799999999877 467777664

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=99.30  E-value=1.1e-13  Score=128.39  Aligned_cols=73  Identities=18%  Similarity=0.227  Sum_probs=44.0

Q ss_pred             EEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEE---CCEeCCCCCHHHHhcceEEEccCCcCc-----cccHHH
Q 020527          103 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI---DGFPLTDLDIRWLREKIGFVGQEPQLL-----QMDIKS  174 (325)
Q Consensus       103 l~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i---~g~~i~~~~~~~~r~~i~~v~Q~~~l~-----~~tv~e  174 (325)
                      +++.+|++++|+||||||||||+|+|+|+.+|.+|+|.+   +|+.+.... ...+..++|++|.|.+.     ..|+ |
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e  245 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E  245 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence            456789999999999999999999999999999999999   887765432 11222389999999664     3578 8


Q ss_pred             HHh
Q 020527          175 NIM  177 (325)
Q Consensus       175 nl~  177 (325)
                      |+.
T Consensus       246 ~l~  248 (307)
T 1t9h_A          246 ELG  248 (307)
T ss_dssp             HHG
T ss_pred             HHH
Confidence            883

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=99.29  E-value=7e-13  Score=122.94  Aligned_cols=99  Identities=16%  Similarity=0.262  Sum_probs=72.3

Q ss_pred             eeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcC
Q 020527          100 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYG  179 (325)
Q Consensus       100 ~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~  179 (325)
                      .++++.++|++++|+|||||||||+++.|++.+.+..|+|.+.+.|...  ..                   ..+++   
T Consensus        96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r--~~-------------------a~eqL---  151 (306)
T 1vma_A           96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR--AA-------------------AIEQL---  151 (306)
T ss_dssp             CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC--HH-------------------HHHHH---
T ss_pred             CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc--HH-------------------HHHHH---
Confidence            3456678899999999999999999999999999988999988766421  10                   01111   


Q ss_pred             CCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHH---HHHHHHcCCCCEEEEeCCCC
Q 020527          180 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI---AIARAILRDPAILLLDEATS  246 (325)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv---~iAral~~~p~llllDEPts  246 (325)
                                ..+.+..++       +  .     ...+|+|+.|++   ++++|+..+|+++|+|||..
T Consensus       152 ----------~~~~~~~gl-------~--~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~  197 (306)
T 1vma_A          152 ----------KIWGERVGA-------T--V-----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR  197 (306)
T ss_dssp             ----------HHHHHHHTC-------E--E-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred             ----------HHHHHHcCC-------c--E-----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence                      111111111       1  0     024689999999   99999999999999999974

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=99.29  E-value=5e-12  Score=116.70  Aligned_cols=143  Identities=13%  Similarity=0.207  Sum_probs=89.1

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCC
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVK  185 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~  185 (325)
                      ++|++++++|||||||||+++.|++.+.+++|                  ++|.++.+++  +..+..+++..       
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~--~r~~a~eqL~~-------  155 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDT--YRIAAVEQLKT-------  155 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCC--SSTTHHHHHHH-------
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCc--ccchHHHHHHH-------
Confidence            47999999999999999999999999988778                  2466666665  23333333321       


Q ss_pred             HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc
Q 020527          186 NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRN  265 (325)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~  265 (325)
                            ..+..+       .+.    .   ...+ +..-+.++++  +.+|+++|+|  |+|+|+.....+.++.+-+..
T Consensus       156 ------~~~~~g-------l~~----~---~~~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~  210 (296)
T 2px0_A          156 ------YAELLQ-------APL----E---VCYT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPF  210 (296)
T ss_dssp             ------HHTTTT-------CCC----C---BCSS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCC
T ss_pred             ------HHHhcC-------CCe----E---ecCC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhh
Confidence                  000000       110    0   0112 3344666765  4899999999  899998776555554443321


Q ss_pred             cCCCCeEEEE-EecCchHHHh-cCEEEEEeCCEEEEE
Q 020527          266 DCKTKRTVIV-IAHRLSTIKA-VDRIVVIDDGRIIEV  300 (325)
Q Consensus       266 ~~~~g~tvi~-vtH~~~~~~~-~d~v~~l~~G~i~~~  300 (325)
                      ....+..+++ +||+.+.+.. ++++..++.+.++..
T Consensus       211 ~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt  247 (296)
T 2px0_A          211 ESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT  247 (296)
T ss_dssp             CTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred             cCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence            1112334444 4899877754 777666667777654

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=99.28  E-value=1.9e-12  Score=114.85  Aligned_cols=171  Identities=16%  Similarity=0.214  Sum_probs=91.2

Q ss_pred             Cceeee-eEEeeCCcEEEEEcCCCChHHHHH-HHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccH
Q 020527           96 PILNHV-CLTIEANEVVAIVGLSGSGKSTFV-NLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDI  172 (325)
Q Consensus        96 ~iL~~i-sl~i~~Ge~~~iiG~nGsGKSTLl-~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv  172 (325)
                      +.|+.+ .--+++|++++|.||||||||||+ +++.+..+...+.++++... .........+.+++.+|+.... ..++
T Consensus        10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~-~~~~~~~~~~~~g~~~~~~~~~~~l~~   88 (247)
T 2dr3_A           10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE-HPVQVRQNMAQFGWDVKPYEEKGMFAM   88 (247)
T ss_dssp             TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS-CHHHHHHHHHTTTCCCHHHHHHTSEEE
T ss_pred             hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC-CHHHHHHHHHHcCCCHHHHhhCCcEEE
Confidence            356666 557899999999999999999995 45555555544555555432 1101111223456655543110 1111


Q ss_pred             HHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc--CCCCEEEEeCCCCCC--
Q 020527          173 KSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL--RDPAILLLDEATSAL--  248 (325)
Q Consensus       173 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~--~~p~llllDEPts~L--  248 (325)
                      .+.  +.  .....               .....    ........+  ..+....++.++  .+|+++++|+|++.+  
T Consensus        89 ~~~--~~--~~~~~---------------~~~~~----~~~~~~~~~--~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~  143 (247)
T 2dr3_A           89 VDA--FT--AGIGK---------------SKEYE----KYIVHDLTD--IREFIEVLRQAIRDINAKRVVVDSVTTLYIN  143 (247)
T ss_dssp             EEC--ST--TTTCC-----------------CCC----SCBCSCCSS--HHHHHHHHHHHHHHHTCCEEEEETSGGGTTT
T ss_pred             Eec--ch--hhccc---------------ccccc----cccccCccC--HHHHHHHHHHHHHHhCCCEEEECCchHhhcC
Confidence            110  00  00000               00000    000001112  222233333333  479999999999988  


Q ss_pred             CHHHHHHHHHHHHHhhccCCCCeEEEEEecCchH--------H-HhcCEEEEEeC
Q 020527          249 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST--------I-KAVDRIVVIDD  294 (325)
Q Consensus       249 D~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~--------~-~~~d~v~~l~~  294 (325)
                      |+....+++..+.++.++  .|+|||+++|....        + ..||.|+.|+.
T Consensus       144 ~~~~~~~~l~~l~~~~~~--~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~  196 (247)
T 2dr3_A          144 KPAMARSIILQLKRVLAG--TGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL  196 (247)
T ss_dssp             CGGGHHHHHHHHHHHHHH--TTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred             CHHHHHHHHHHHHHHHHH--CCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence            654445555555555443  48899999998764        3 34899999964

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=99.23  E-value=2.5e-11  Score=111.91  Aligned_cols=143  Identities=18%  Similarity=0.155  Sum_probs=97.3

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      +.++++++.|+..   .  ++++|+  +|++++++|+||+||||+++.|++++.+..|+|.+.+.++..  .....    
T Consensus        77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~--~~~~~----  143 (295)
T 1ls1_A           77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR--PAARE----  143 (295)
T ss_dssp             HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC--HHHHH----
T ss_pred             HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc--HhHHH----
Confidence            5677788888642   2  788888  899999999999999999999999999999999998876532  11100    


Q ss_pred             EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEE
Q 020527          160 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL  239 (325)
Q Consensus       160 ~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ll  239 (325)
                         |   +.  ++                    .+..+       ++    ........+-.+.+|.+++++...+++++
T Consensus       144 ---q---l~--~~--------------------~~~~~-------l~----~~~~~~~~~p~~l~~~~l~~~~~~~~D~v  184 (295)
T 1ls1_A          144 ---Q---LR--LL--------------------GEKVG-------VP----VLEVMDGESPESIRRRVEEKARLEARDLI  184 (295)
T ss_dssp             ---H---HH--HH--------------------HHHHT-------CC----EEECCTTCCHHHHHHHHHHHHHHHTCCEE
T ss_pred             ---H---HH--Hh--------------------cccCC-------eE----EEEcCCCCCHHHHHHHHHHHHHhCCCCEE
Confidence               0   00  00                    00000       10    00000112344567899999988999999


Q ss_pred             EEeCC-CCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEec
Q 020527          240 LLDEA-TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH  278 (325)
Q Consensus       240 llDEP-ts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH  278 (325)
                      |+||| ++++|......+.++...+.    ...+++++..
T Consensus       185 iiDtpp~~~~d~~~~~~l~~~~~~~~----~~~~~lv~~~  220 (295)
T 1ls1_A          185 LVDTAGRLQIDEPLMGELARLKEVLG----PDEVLLVLDA  220 (295)
T ss_dssp             EEECCCCSSCCHHHHHHHHHHHHHHC----CSEEEEEEEG
T ss_pred             EEeCCCCccccHHHHHHHHHHhhhcC----CCEEEEEEeC
Confidence            99999 99999988887777776663    2345554443

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=99.23  E-value=3.9e-15  Score=135.85  Aligned_cols=139  Identities=16%  Similarity=0.175  Sum_probs=95.3

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      -+++++.+.|..   ..+++++++++++|  ++|+||||||||||+++|++...  .|.|.+++.++........++.++
T Consensus        50 ~~l~~l~~~~~~---~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~  122 (278)
T 1iy2_A           50 EELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR  122 (278)
T ss_dssp             HHHHHHHHHHHC---HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHH
T ss_pred             HHHHHHHHHHHC---HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHH
Confidence            345666666743   35899999999999  99999999999999999999885  899999987664332233345678


Q ss_pred             EEccCCc-Cc-cccHHHHH-hcCCCCCC----CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 020527          160 FVGQEPQ-LL-QMDIKSNI-MYGCPKDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI  232 (325)
Q Consensus       160 ~v~Q~~~-l~-~~tv~enl-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral  232 (325)
                      +++|... .+ ..++.|++ .++.....    ..+.....     +..++.             .|||||+||+.+++|+
T Consensus       123 ~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~-----~~~ll~-------------~lsgg~~~~~~i~~a~  184 (278)
T 1iy2_A          123 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT-----LNQLLV-------------EMDGFEKDTAIVVMAA  184 (278)
T ss_dssp             HHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHH-----HHHHHH-------------HHTTCCTTCCEEEEEE
T ss_pred             HHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHH-----HHHHHH-------------HHhCCCCCCCEEEEEe
Confidence            8888764 33 45777777 34321110    00111111     122222             3799999999999999


Q ss_pred             cCCCCEEEEeCCC
Q 020527          233 LRDPAILLLDEAT  245 (325)
Q Consensus       233 ~~~p~llllDEPt  245 (325)
                      .++|++  +|++.
T Consensus       185 t~~p~~--ld~~l  195 (278)
T 1iy2_A          185 TNRPDI--LDPAL  195 (278)
T ss_dssp             ESCTTS--SCHHH
T ss_pred             cCCchh--CCHhH
Confidence            999987  57664

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=99.22  E-value=4.5e-15  Score=133.42  Aligned_cols=140  Identities=16%  Similarity=0.169  Sum_probs=95.8

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      .+++++.+.|..   ..+++++++++++|  ++|+||||||||||+++|++...  .|.+.+++.++........++.++
T Consensus        26 ~~l~~l~~~~~~---~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~   98 (254)
T 1ixz_A           26 EELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR   98 (254)
T ss_dssp             HHHHHHHHHHHC---HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHH
T ss_pred             HHHHHHHHHHHC---HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHH
Confidence            456677766743   25899999999999  99999999999999999999875  889999987654332233345677


Q ss_pred             EEccCCc-Cc-cccHHHHH-hcCCCCCC----CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 020527          160 FVGQEPQ-LL-QMDIKSNI-MYGCPKDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI  232 (325)
Q Consensus       160 ~v~Q~~~-l~-~~tv~enl-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral  232 (325)
                      +++|... .+ ..++.|++ .++.....    ..+.....     +..++.             .|||||+||+.+++|+
T Consensus        99 ~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~-----~~~ll~-------------~l~g~~~~~~~i~~a~  160 (254)
T 1ixz_A           99 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT-----LNQLLV-------------EMDGFEKDTAIVVMAA  160 (254)
T ss_dssp             HHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHH-----HHHHHH-------------HHHTCCTTCCEEEEEE
T ss_pred             HHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHH-----HHHHHH-------------HHhCCCCCCCEEEEEc
Confidence            8888764 33 45677777 34321110    01111111     122222             3799999999999999


Q ss_pred             cCCCCEEEEeCCCC
Q 020527          233 LRDPAILLLDEATS  246 (325)
Q Consensus       233 ~~~p~llllDEPts  246 (325)
                      .++|++  +|++.-
T Consensus       161 t~~p~~--ld~~l~  172 (254)
T 1ixz_A          161 TNRPDI--LDPALL  172 (254)
T ss_dssp             ESCGGG--SCGGGG
T ss_pred             cCCchh--CCHHHc
Confidence            999987  687764

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=99.21  E-value=2.8e-13  Score=120.34  Aligned_cols=75  Identities=13%  Similarity=0.193  Sum_probs=51.7

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCH-------
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-------  151 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~-------  151 (325)
                      .|+++|++..|+         . ++++.+ ++++|+||||||||||+++|+|++.|++|+|.++|.++...++       
T Consensus         9 ~l~l~~~~~~~~---------~-~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~   77 (227)
T 1qhl_A            9 SLTLINWNGFFA---------R-TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGL   77 (227)
T ss_dssp             EEEEEEETTEEE---------E-EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------C
T ss_pred             EEEEEeeecccC---------C-EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccch
Confidence            488888865442         1 566777 8999999999999999999999999999999999988743221       


Q ss_pred             -HHHhcceEEEccC
Q 020527          152 -RWLREKIGFVGQE  164 (325)
Q Consensus       152 -~~~r~~i~~v~Q~  164 (325)
                       ...+..++|++|+
T Consensus        78 ~~~~~~~i~~v~~~   91 (227)
T 1qhl_A           78 HGKLKAGVCYSMLD   91 (227)
T ss_dssp             GGGBCSSEEEEEEE
T ss_pred             hhHhhcCcEEEEEe
Confidence             1235679999985

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=99.21  E-value=4.4e-11  Score=112.79  Aligned_cols=144  Identities=20%  Similarity=0.246  Sum_probs=83.0

Q ss_pred             EeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEE-CCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCC
Q 020527          104 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI-DGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK  182 (325)
Q Consensus       104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i-~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~  182 (325)
                      -+++|+++.|.||+|||||||+..++.......|.+.| +...  ..+. .+.+++|+-+++..           +.   
T Consensus        57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~~-~~a~~lG~~~~~l~-----------i~---  119 (349)
T 2zr9_A           57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALDP-EYAKKLGVDTDSLL-----------VS---  119 (349)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCH-HHHHHTTCCGGGCE-----------EE---
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcCH-HHHHHcCCCHHHeE-----------Ee---
Confidence            47899999999999999999988777554433444333 3221  1111 11111222111110           00   


Q ss_pred             CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC--CCEEEEeCCCCCC----------CH
Q 020527          183 DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD--PAILLLDEATSAL----------DS  250 (325)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~--p~llllDEPts~L----------D~  250 (325)
                                                       ...+.  .|-+.++++++.+  |+++++|||++.+          |+
T Consensus       120 ---------------------------------~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~  164 (349)
T 2zr9_A          120 ---------------------------------QPDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDS  164 (349)
T ss_dssp             ---------------------------------CCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----
T ss_pred             ---------------------------------cCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccc
Confidence                                             00122  2334577777754  9999999999998          32


Q ss_pred             ---HHHHHHHHHHHHhh---ccCCCCeEEEEEecCch----------------HHHh-cCEEEEEeCCEEEEEc
Q 020527          251 ---ESEHYVKGVLHALR---NDCKTKRTVIVIAHRLS----------------TIKA-VDRIVVIDDGRIIEVG  301 (325)
Q Consensus       251 ---~~~~~i~~~l~~l~---~~~~~g~tvi~vtH~~~----------------~~~~-~d~v~~l~~G~i~~~g  301 (325)
                         ...+.+.+.++++.   ++  .++|||+++|-..                .++. ||.++.++.++++..|
T Consensus       165 ~~~~q~r~~~~~l~~L~~~a~~--~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g  236 (349)
T 2zr9_A          165 HVGLQARLMSQALRKMTGALNN--SGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDG  236 (349)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHH--HTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSS
T ss_pred             hhhHHHHHHHHHHHHHHHHHHH--hCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecC
Confidence               12223444444442   32  4889999999543                1444 8999999877655443

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.20  E-value=4e-15  Score=142.30  Aligned_cols=170  Identities=14%  Similarity=0.131  Sum_probs=106.2

Q ss_pred             EeeCCcEEEEEcCCCChHHHHHHHHHc------------CCCCCCCeEEECCEeCCCCCH-HHHhcce---EEEccCCcC
Q 020527          104 TIEANEVVAIVGLSGSGKSTFVNLLLR------------LYEPSDGQIYIDGFPLTDLDI-RWLREKI---GFVGQEPQL  167 (325)
Q Consensus       104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~g------------l~~~~~G~I~i~g~~i~~~~~-~~~r~~i---~~v~Q~~~l  167 (325)
                      ++++|..++|+|+||||||||+++|+|            ...|++|.+.++|..+..+.. ..-++.+   .++.+.|-+
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl   95 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL   95 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence            467899999999999999999999999            667999999998854321100 0001222   355666655


Q ss_pred             cc-ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC--CEEEEeCC
Q 020527          168 LQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP--AILLLDEA  244 (325)
Q Consensus       168 ~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p--~llllDEP  244 (325)
                      +. .+..+++        ... .....+.+.  ..+.-.....+  .....+||+.            +|  +++++|||
T Consensus        96 ~~~~s~~e~L--------~~~-fl~~ir~~d--~il~Vvd~~~d--~~i~~v~~~~------------dP~~di~ildee  150 (392)
T 1ni3_A           96 TKGASTGVGL--------GNA-FLSHVRAVD--AIYQVVRAFDD--AEIIHVEGDV------------DPIRDLSIIVDE  150 (392)
T ss_dssp             CCCCCSSSSS--------CHH-HHHHHTTCS--EEEEEEECCCT--TCSSCCSSSS------------CHHHHHHHHHHH
T ss_pred             ccCCcHHHHH--------HHH-HHHHHHHHH--HHHHHHhcccc--ceeeeecccc------------Ccchhhhhchhh
Confidence            42 2332221        111 111111110  00000000000  0011255542            89  99999999


Q ss_pred             CCCCCHHHHHHHHHHHHHh-hccCCCCeEEEEEecCchHHHh-cCEEE-EEeCC-EEEEEcCh
Q 020527          245 TSALDSESEHYVKGVLHAL-RNDCKTKRTVIVIAHRLSTIKA-VDRIV-VIDDG-RIIEVGNH  303 (325)
Q Consensus       245 ts~LD~~~~~~i~~~l~~l-~~~~~~g~tvi~vtH~~~~~~~-~d~v~-~l~~G-~i~~~g~~  303 (325)
                      ++.+|+....+.++.+... .+   .|.|++  +|++..+.. ||++. +|++| +++..|+.
T Consensus       151 l~~~D~~~~~k~~~~l~~~~~~---~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~  208 (392)
T 1ni3_A          151 LLIKDAEFVEKHLEGLRKITSR---GANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGDW  208 (392)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC---SSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHh---cCCccc--cccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence            9999999999888888887 43   366753  999988764 99998 99999 87765543

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.20  E-value=7.9e-13  Score=113.56  Aligned_cols=141  Identities=19%  Similarity=0.113  Sum_probs=76.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCCCC-----------CCCeEEECCEeCCC--CCHHHHhcceEEEccCCcCc--cccHHH
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLYEP-----------SDGQIYIDGFPLTD--LDIRWLREKIGFVGQEPQLL--QMDIKS  174 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~~~-----------~~G~I~i~g~~i~~--~~~~~~r~~i~~v~Q~~~l~--~~tv~e  174 (325)
                      .++|+|+||||||||++.++|...+           .+|+|.++|+++.-  ++....++..++++|...-.  ...|+|
T Consensus        31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d  110 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD  110 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence            6899999999999999999998765           57899999976521  11111112233333321100  112222


Q ss_pred             HHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcc--cccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHH
Q 020527          175 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE--TLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES  252 (325)
Q Consensus       175 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~  252 (325)
                      +....     ..+.+.....     ++.........  .......|..-..+.+.+|++++.+|+++++|  ||++|..+
T Consensus       111 ~~~~~-----s~~~~~~~~~-----~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~  178 (191)
T 1oix_A          111 IAKHL-----TYENVERWLK-----ELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTN  178 (191)
T ss_dssp             TTCHH-----HHHTHHHHHH-----HHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTT
T ss_pred             CcCHH-----HHHHHHHHHH-----HHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEE--EeCCCCCC
Confidence            11000     0000111111     01110000000  00001123332234578899999999999999  99999999


Q ss_pred             HHHHHHHHHH
Q 020527          253 EHYVKGVLHA  262 (325)
Q Consensus       253 ~~~i~~~l~~  262 (325)
                      ...+++.+.+
T Consensus       179 v~~l~~~l~~  188 (191)
T 1oix_A          179 VEAAFQTILT  188 (191)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9988888754

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=99.20  E-value=1.3e-12  Score=128.71  Aligned_cols=169  Identities=15%  Similarity=0.132  Sum_probs=95.9

Q ss_pred             eeeeEEeeCCcEEEEEcCCCChHHHHHHHHHc--CCCCCCCeEEECCEeCCCCCHHHHhc--c-eEEEccCCcCccccHH
Q 020527           99 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR--LYEPSDGQIYIDGFPLTDLDIRWLRE--K-IGFVGQEPQLLQMDIK  173 (325)
Q Consensus        99 ~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~g--l~~~~~G~I~i~g~~i~~~~~~~~r~--~-i~~v~Q~~~l~~~tv~  173 (325)
                      +.+++++.++..++|.|++||||||+++.|..  ++.++.|++.+.+.|.+......+..  + .+.|.+++.    -+.
T Consensus       158 ~pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~lPhl~~~Vvtd~~----~a~  233 (512)
T 2ius_A          158 EPVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMK----DAA  233 (512)
T ss_dssp             CEEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTTCTTBSSSCBCSHH----HHH
T ss_pred             CEEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhccCCcccceeecCHH----HHH
Confidence            35788899999999999999999999999886  67777899988888766432222210  0 001111110    011


Q ss_pred             HHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHH----------HHHHHHcCCCC-EEEEe
Q 020527          174 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI----------AIARAILRDPA-ILLLD  242 (325)
Q Consensus       174 enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv----------~iAral~~~p~-llllD  242 (325)
                      +.+...  ... .++..+.+...++.++..     +... ....+|+||+|+.          ++|+++...|. ++++|
T Consensus       234 ~~L~~~--~~E-merR~~ll~~~Gv~~i~~-----yn~~-~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvID  304 (512)
T 2ius_A          234 NALRWC--VNE-MERRYKLMSALGVRNLAG-----YNEK-IAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVD  304 (512)
T ss_dssp             HHHHHH--HHH-HHHHHHHHHHTTCSSHHH-----HHHH-HHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEE
T ss_pred             HHHHHH--HHH-HHHHHHHHHHcCCccHHH-----HHHH-HHHHhhcCCcccccccccccchhccccccccCCcEEEEEe
Confidence            111110  000 000011122222111100     0000 0013678887752          46677788898 89999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhhccC-CCCeEEEEEecCch
Q 020527          243 EATSALDSESEHYVKGVLHALRNDC-KTKRTVIVIAHRLS  281 (325)
Q Consensus       243 EPts~LD~~~~~~i~~~l~~l~~~~-~~g~tvi~vtH~~~  281 (325)
                      |+++-+|.. ...+.+.+.++.+.. ..|.++|++||+++
T Consensus       305 E~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~  343 (512)
T 2ius_A          305 EFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS  343 (512)
T ss_dssp             THHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred             CHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence            999988843 345666666664432 23899999999987

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=99.13  E-value=7.5e-12  Score=122.09  Aligned_cols=179  Identities=13%  Similarity=0.158  Sum_probs=108.8

Q ss_pred             CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCC-eEEECCEeCCCCCHHHHhcce-EEEccCCcCccccHH
Q 020527           96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QIYIDGFPLTDLDIRWLREKI-GFVGQEPQLLQMDIK  173 (325)
Q Consensus        96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G-~I~i~g~~i~~~~~~~~r~~i-~~v~Q~~~l~~~tv~  173 (325)
                      +.|+++..-+++|+++.|.|++|+|||||+..+++...+..| .|.+.+.+   .+..++.+++ +....      .. .
T Consensus       191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E---~s~~~l~~r~~~~~~~------~~-~  260 (454)
T 2r6a_A          191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE---MSAQQLVMRMLCAEGN------IN-A  260 (454)
T ss_dssp             HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS---SCHHHHHHHHHHHHHT------CC-H
T ss_pred             HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC---CCHHHHHHHHHHHHcC------CC-H
Confidence            578888878999999999999999999999999987766555 56665433   2333333221 10000      00 1


Q ss_pred             HHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc--CCCCEEEEeCCCCCCCH-
Q 020527          174 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL--RDPAILLLDEATSALDS-  250 (325)
Q Consensus       174 enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~--~~p~llllDEPts~LD~-  250 (325)
                      +.+..|   ....+......+.   .+.+...+.-   ......+|.+|.+  +.+|.+.  .+|+++++|+++.-.+. 
T Consensus       261 ~~l~~g---~l~~~~~~~~~~a---~~~l~~~~l~---i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~  329 (454)
T 2r6a_A          261 QNLRTG---KLTPEDWGKLTMA---MGSLSNAGIY---IDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSG  329 (454)
T ss_dssp             HHHHTS---CCCHHHHHHHHHH---HHHHHSSCEE---EECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSC
T ss_pred             HHHhcC---CCCHHHHHHHHHH---HHHHhcCCEE---EECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCC
Confidence            122222   1223222222111   1112222211   1112468999876  5667666  68999999999997743 


Q ss_pred             -------HHHHHHHHHHHHhhccCCCCeEEEEEec---------C--ch--------HHH-hcCEEEEEeCCEE
Q 020527          251 -------ESEHYVKGVLHALRNDCKTKRTVIVIAH---------R--LS--------TIK-AVDRIVVIDDGRI  297 (325)
Q Consensus       251 -------~~~~~i~~~l~~l~~~~~~g~tvi~vtH---------~--~~--------~~~-~~d~v~~l~~G~i  297 (325)
                             .....+.+.|+.++++  .+++||+++|         +  +.        .+. .||.|++|..++.
T Consensus       330 ~~~~~~~~~i~~i~~~Lk~lAke--~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~  401 (454)
T 2r6a_A          330 RSKENRQQEVSEISRSLKALARE--LEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY  401 (454)
T ss_dssp             C----CHHHHHHHHHHHHHHHHH--HTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHH--hCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence                   2335566667777654  4889999999         3  32        344 4999999986654

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=99.11  E-value=2.1e-12  Score=130.38  Aligned_cols=156  Identities=13%  Similarity=0.138  Sum_probs=102.1

Q ss_pred             CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCC-CeEEECCEeCCCCCHHHHhcceEEEccCCc--------
Q 020527           96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-GQIYIDGFPLTDLDIRWLREKIGFVGQEPQ--------  166 (325)
Q Consensus        96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~-G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~--------  166 (325)
                      .+++++++.+.+|+.++|+||||+|||||+++|++++++.. |.+.+++.+....     ...++++|+...        
T Consensus        48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~~~  122 (604)
T 3k1j_A           48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEKYR  122 (604)
T ss_dssp             HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHHHH
T ss_pred             hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHHHH
Confidence            58999999999999999999999999999999999999887 7888888665432     345888876541        


Q ss_pred             --------------Cc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 020527          167 --------------LL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA  231 (325)
Q Consensus       167 --------------l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra  231 (325)
                                    .+ ..++.+|+............+..  ......++.....  +... ....+|+|++|++..++.
T Consensus       123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~--~~~~~~~L~G~~~--~~~~-~~g~~~~g~~~~i~~g~~  197 (604)
T 3k1j_A          123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA--TGAHAGALLGDVR--HDPF-QSGGLGTPAHERVEPGMI  197 (604)
T ss_dssp             HHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC--TTCCHHHHHCEEC--CCCC-----CCCCGGGGEECCHH
T ss_pred             HhhccchhhhhhcccccccccccceeeccccCCCCCEEEc--CCCCHHhcCceEE--echh-hcCCccccccccccCcee
Confidence                          11 23334444322110000000000  0011112221111  0000 013589999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 020527          232 ILRDPAILLLDEATSALDSESEHYVKGVLHA  262 (325)
Q Consensus       232 l~~~p~llllDEPts~LD~~~~~~i~~~l~~  262 (325)
                      ...++.+|++||... |++.....+++.|++
T Consensus       198 ~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~  227 (604)
T 3k1j_A          198 HRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE  227 (604)
T ss_dssp             HHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred             eecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence            999999999999987 899999988888875

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=99.03  E-value=4.8e-11  Score=105.53  Aligned_cols=183  Identities=13%  Similarity=0.133  Sum_probs=72.0

Q ss_pred             CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHH-cCCCCCCCeEEECCEeCCCCCHH-HHhcceEEEccCCcCc-cccH
Q 020527           96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-RLYEPSDGQIYIDGFPLTDLDIR-WLREKIGFVGQEPQLL-QMDI  172 (325)
Q Consensus        96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~-gl~~~~~G~I~i~g~~i~~~~~~-~~r~~i~~v~Q~~~l~-~~tv  172 (325)
                      +..+++||++++|++++|+||||||||||+++|+ |++++    + +++.++....+. .....+.|.++++..| ..+.
T Consensus        15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~----~-~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~   89 (231)
T 3lnc_A           15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN----I-VKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCS   89 (231)
T ss_dssp             -------CCEECCCEEEEECSCC----CHHHHHHC----C----E-EECCCEESSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred             cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC----c-ccccccCCCCCCccccCCCeEEEecHHHhhhhhh
Confidence            4678999999999999999999999999999999 99854    1 223222111110 0112345666666544 2344


Q ss_pred             HHHHhcC----C-CCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCCh--HHHHHH-HHH-HHHcCCCCEEEEeC
Q 020527          173 KSNIMYG----C-PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSG--GQKQRI-AIA-RAILRDPAILLLDE  243 (325)
Q Consensus       173 ~enl~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSg--Gq~QRv-~iA-ral~~~p~llllDE  243 (325)
                      .+++...    . ......+.+.+..+...            ..... -.+.|  .-+++. .-+ ..++..|+..++||
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------~vild-~~~~g~~~~~~~~~~~~~~v~v~~~~~~~l~~  156 (231)
T 3lnc_A           90 NGEIIEHAEVFGNFYGVPRKNLEDNVDKGV------------STLLV-IDWQGAFKFMEMMREHVVSIFIMPPSMEELRR  156 (231)
T ss_dssp             TTCEEEEEEETTEEEEEECTTHHHHHHHTC------------EEEEE-CCHHHHHHHHHHSGGGEEEEEEECSCHHHHHH
T ss_pred             cCceehhhhhccccCCCCHHHHHHHHHcCC------------eEEEE-cCHHHHHHHHHhcCCCeEEEEEECCcHHHHHH
Confidence            4443210    0 00000111222222100            00000 00111  113332 111 23356777778889


Q ss_pred             CCCCCCHHHHHHHHHHHHHhhccC--CCCeEEEEEecCchHHH-hcCEEEEEeCCE
Q 020527          244 ATSALDSESEHYVKGVLHALRNDC--KTKRTVIVIAHRLSTIK-AVDRIVVIDDGR  296 (325)
Q Consensus       244 Pts~LD~~~~~~i~~~l~~l~~~~--~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~  296 (325)
                      ++.+.|..+.+.+.+.+.....+.  .....+++++|+++.+. .+++++...+++
T Consensus       157 Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i~~~~~~  212 (231)
T 3lnc_A          157 RLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNILRAEQMK  212 (231)
T ss_dssp             C--------------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHHHHHHTB
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHHHHHhhc
Confidence            999998877777766665432210  12346777788777653 355554433444

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=99.01  E-value=1.8e-11  Score=110.14  Aligned_cols=72  Identities=21%  Similarity=0.242  Sum_probs=59.6

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHH---cCCCCCCCeEE--------ECCEeCC-CCCHHHHhcceEEEccCC------cC
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLL---RLYEPSDGQIY--------IDGFPLT-DLDIRWLREKIGFVGQEP------QL  167 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~---gl~~~~~G~I~--------i~g~~i~-~~~~~~~r~~i~~v~Q~~------~l  167 (325)
                      ++|++++|+|||||||||++++|+   |+..|++|.++        .+|.++. ......+++.+++++|.+      .+
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  104 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL  104 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence            789999999999999999999999   99999999999        9998884 334567888999999754      23


Q ss_pred             ccccHHHHHh
Q 020527          168 LQMDIKSNIM  177 (325)
Q Consensus       168 ~~~tv~enl~  177 (325)
                      +..++.+|+.
T Consensus       105 ~~~~v~~~i~  114 (252)
T 4e22_A          105 EGEDVSNEIR  114 (252)
T ss_dssp             TTEECTTGGG
T ss_pred             CCeehhHHHH
Confidence            3456766654

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=98.97  E-value=7.8e-11  Score=101.36  Aligned_cols=36  Identities=25%  Similarity=0.191  Sum_probs=31.3

Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q 020527          226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL  263 (325)
Q Consensus       226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l  263 (325)
                      ...|++++.+|+++++|  ||++|......+++.+.+.
T Consensus       130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~  165 (199)
T 2f9l_A          130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTE  165 (199)
T ss_dssp             HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHH
Confidence            45689999999999999  9999999998888877554

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=98.89  E-value=6.7e-10  Score=113.18  Aligned_cols=134  Identities=19%  Similarity=0.189  Sum_probs=89.8

Q ss_pred             eEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC--CCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcC
Q 020527          102 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYG  179 (325)
Q Consensus       102 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~--~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~  179 (325)
                      |+++++|..++|+|++|+|||||++.|++...+  ..|+| .+|..+.++...+.++.+++.+|...++..++..|+.-.
T Consensus         3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT   81 (665)
T 2dy1_A            3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA   81 (665)
T ss_dssp             ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred             CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence            456788999999999999999999999977654  67988 788888777777778889999998877655555554321


Q ss_pred             CCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHH
Q 020527          180 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV  259 (325)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~  259 (325)
                       +... +                               ++ .+    .....-..++-++++| |+.++++.+...+ +.
T Consensus        82 -pG~~-~-------------------------------f~-~~----~~~~l~~ad~~ilVvD-~~~g~~~qt~~~~-~~  121 (665)
T 2dy1_A           82 -PGYG-D-------------------------------FV-GE----IRGALEAADAALVAVS-AEAGVQVGTERAW-TV  121 (665)
T ss_dssp             -CCSG-G-------------------------------GH-HH----HHHHHHHCSEEEEEEE-TTTCSCHHHHHHH-HH
T ss_pred             -CCcc-c-------------------------------hH-HH----HHHHHhhcCcEEEEEc-CCcccchhHHHHH-HH
Confidence             1010 0                               00 00    1111123567788888 9999998776332 22


Q ss_pred             HHHhhccCCCCeEEEEEecCchH
Q 020527          260 LHALRNDCKTKRTVIVIAHRLST  282 (325)
Q Consensus       260 l~~l~~~~~~g~tvi~vtH~~~~  282 (325)
                         +.+   .+..+|++.|.++.
T Consensus       122 ---~~~---~~ip~ilv~NKiD~  138 (665)
T 2dy1_A          122 ---AER---LGLPRMVVVTKLDK  138 (665)
T ss_dssp             ---HHH---TTCCEEEEEECGGG
T ss_pred             ---HHH---ccCCEEEEecCCch
Confidence               222   25678888888764

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.87  E-value=2.1e-10  Score=99.22  Aligned_cols=70  Identities=17%  Similarity=0.156  Sum_probs=49.1

Q ss_pred             eEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHHHH
Q 020527          102 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNI  176 (325)
Q Consensus       102 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~enl  176 (325)
                      .++-++|++++|+||||||||||+++|++.+    |.+.++|.++... ....+..+++++|++..+ ..++.+|+
T Consensus        23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~   93 (200)
T 4eun_A           23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDEDRWPWLRSLAEW   93 (200)
T ss_dssp             -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred             hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCcccccHHHHHHHH
Confidence            3566789999999999999999999999987    8999999876421 112233578888886554 34555554

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=98.85  E-value=6.1e-12  Score=119.78  Aligned_cols=137  Identities=13%  Similarity=0.113  Sum_probs=83.2

Q ss_pred             CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc--cccHH
Q 020527           96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL--QMDIK  173 (325)
Q Consensus        96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~--~~tv~  173 (325)
                      .+++++|+.+++|++++|+||||||||||+++|+|.   .+|++..-+  ...   ..++..++++||.+.++  ..+..
T Consensus       157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~--~~~---~~~~~~lg~~~q~~~~l~dd~~~~  228 (377)
T 1svm_A          157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVN--LPL---DRLNFELGVAIDQFLVVFEDVKGT  228 (377)
T ss_dssp             HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCS--SCT---TTHHHHHGGGTTCSCEEETTCCCS
T ss_pred             HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEe--ccc---hhHHHHHHHhcchhHHHHHHHHHH
Confidence            589999999999999999999999999999999995   467776511  111   11222477888887542  22221


Q ss_pred             HHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhC---------CCCccc-------ccCCCCCChHHHHHHHHHHHHcCCCC
Q 020527          174 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSL---------PCGYET-------LVDDDLLSGGQKQRIAIARAILRDPA  237 (325)
Q Consensus       174 enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~-------~~~~~~LSgGq~QRv~iAral~~~p~  237 (325)
                      .++.-...  ... ...   ....+.+.++..         +.....       ......+++|++||+..+.+++.+|+
T Consensus       229 ~~~~r~l~--~~~-~~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pD  302 (377)
T 1svm_A          229 GGESRDLP--SGQ-GIN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDY  302 (377)
T ss_dssp             TTTTTTCC--CCS-HHH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHH
T ss_pred             HHHHhhcc--ccC-cch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCC
Confidence            11100000  001 100   111223333210         000000       01124589999999999888899999


Q ss_pred             EEE-EeCCCC
Q 020527          238 ILL-LDEATS  246 (325)
Q Consensus       238 lll-lDEPts  246 (325)
                      +++ ||+|+.
T Consensus       303 LliyLd~~~~  312 (377)
T 1svm_A          303 LKHCLERSEF  312 (377)
T ss_dssp             HHHHHHTCTH
T ss_pred             eEEEEeCCHH
Confidence            988 999987

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=98.83  E-value=5.6e-09  Score=98.50  Aligned_cols=61  Identities=20%  Similarity=0.209  Sum_probs=45.3

Q ss_pred             EeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeE-EECCEeCCCCCHHHHhcceEEEccCCcC
Q 020527          104 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI-YIDGFPLTDLDIRWLREKIGFVGQEPQL  167 (325)
Q Consensus       104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I-~i~g~~i~~~~~~~~r~~i~~v~Q~~~l  167 (325)
                      -+++|+++.|.||+|||||||+..+++...+..|.+ ++++....  +. .+.+++++.+|+..+
T Consensus        57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~--~~-~ra~rlgv~~~~l~i  118 (356)
T 3hr8_A           57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL--DP-VYAKNLGVDLKSLLI  118 (356)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--CH-HHHHHHTCCGGGCEE
T ss_pred             CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc--ch-HHHHHcCCchhhhhh
Confidence            378999999999999999999999999888777866 55554322  22 244567777766443

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=98.83  E-value=2.5e-11  Score=106.56  Aligned_cols=69  Identities=22%  Similarity=0.253  Sum_probs=52.2

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHcCC---CCCCCeEEE--------CCEeCCC-CCHHHHhcceEEEccCCc------Ccc
Q 020527          108 NEVVAIVGLSGSGKSTFVNLLLRLY---EPSDGQIYI--------DGFPLTD-LDIRWLREKIGFVGQEPQ------LLQ  169 (325)
Q Consensus       108 Ge~~~iiG~nGsGKSTLl~~l~gl~---~~~~G~I~i--------~g~~i~~-~~~~~~r~~i~~v~Q~~~------l~~  169 (325)
                      +.+++|+|||||||||+.++|++.+   .+++|++..        +|.++.. ....++++++++++|++.      +..
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   84 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG   84 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence            5689999999999999999999876   778899887        6766542 223457788999998752      234


Q ss_pred             ccHHHHH
Q 020527          170 MDIKSNI  176 (325)
Q Consensus       170 ~tv~enl  176 (325)
                      .++.+++
T Consensus        85 ~~v~~~~   91 (227)
T 1cke_A           85 EDVSGEI   91 (227)
T ss_dssp             EECHHHH
T ss_pred             eeCchhh
Confidence            4666665

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=98.81  E-value=2e-09  Score=91.25  Aligned_cols=69  Identities=17%  Similarity=0.140  Sum_probs=49.4

Q ss_pred             ce--eeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCE--eCCCCCH----HHHhcceEEEccCCc
Q 020527           97 IL--NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF--PLTDLDI----RWLREKIGFVGQEPQ  166 (325)
Q Consensus        97 iL--~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~--~i~~~~~----~~~r~~i~~v~Q~~~  166 (325)
                      .+  +++++++.+| +++|+||||||||||+++|.+++.+..|...-.+.  ++.....    ...+..|.+++|++.
T Consensus        14 ~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~   90 (182)
T 3kta_A           14 SYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNED   90 (182)
T ss_dssp             GGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTT
T ss_pred             eecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCC
Confidence            56  7899999999 99999999999999999999998887775432221  1111110    012456999999863

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=98.79  E-value=2.2e-09  Score=101.36  Aligned_cols=174  Identities=16%  Similarity=0.180  Sum_probs=85.9

Q ss_pred             CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHc--CCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcC-c-c-c
Q 020527           96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR--LYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQL-L-Q-M  170 (325)
Q Consensus        96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~g--l~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l-~-~-~  170 (325)
                      .+|++++++++   .++|+|++|||||||++.|.|  ++++.+|.+.-....+.-.....-....+..++.+.. | . .
T Consensus        25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (360)
T 3t34_A           25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFA  101 (360)
T ss_dssp             CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHH
T ss_pred             cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHH
Confidence            58999999998   899999999999999999999  6788888765443322100000001223333332211 1 1 0


Q ss_pred             cHHH-----HHhc-CCCCCCCHHHHH-HHH--HHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEE
Q 020527          171 DIKS-----NIMY-GCPKDVKNEDIE-WAA--KQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLL  241 (325)
Q Consensus       171 tv~e-----nl~~-~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llll  241 (325)
                      .+.+     +... +.........+. ...  ....+ .++ ..| |+.......+.++.++|+..++++.+.+|+++|+
T Consensus       102 ~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l-~lv-DtP-G~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iil  178 (360)
T 3t34_A          102 AVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNL-TLI-DLP-GLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIIL  178 (360)
T ss_dssp             HHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSE-EEE-ECC-CBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEE
T ss_pred             HHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCe-EEE-ECC-CCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEE
Confidence            1111     1111 000000000000 000  00000 000 111 2111111134678899999999999999998888


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEec
Q 020527          242 DEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH  278 (325)
Q Consensus       242 DEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH  278 (325)
                      .-..+..|..+ ....++++.+...  ...+++++|.
T Consensus       179 vv~~~~~~~~~-~~~~~l~~~~~~~--~~~~i~V~nK  212 (360)
T 3t34_A          179 AISPANQDLAT-SDAIKISREVDPS--GDRTFGVLTK  212 (360)
T ss_dssp             EEEETTSCGGG-CHHHHHHHHSCTT--CTTEEEEEEC
T ss_pred             EeecccCCcCC-HHHHHHHHHhccc--CCCEEEEEeC
Confidence            74444455544 3445666666432  2357777776

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.77  E-value=4.7e-10  Score=100.97  Aligned_cols=52  Identities=19%  Similarity=0.316  Sum_probs=35.7

Q ss_pred             cEEEEEE-EEECCCCCCCCceeeeeEEeeC---CcEEEEEcCCCChHHHHHHHHHcCC
Q 020527           79 HVQFVNI-SFHYPSRPTVPILNHVCLTIEA---NEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus        79 ~i~~~~v-~~~y~~~~~~~iL~~isl~i~~---Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++++|+ +|+|++  ..++|+++||+|++   |++++|+|++||||||+.++|++.+
T Consensus        17 ~l~~~~~~~~~~~~--~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l   72 (250)
T 3nwj_A           17 LLETGSLLHSPFDE--EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL   72 (250)
T ss_dssp             -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             ceEEcceeeEEecC--cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence            5899999 999932  24699999999999   9999999999999999999999854

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=98.77  E-value=1.1e-08  Score=99.97  Aligned_cols=118  Identities=18%  Similarity=0.274  Sum_probs=77.2

Q ss_pred             CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHH
Q 020527           96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSN  175 (325)
Q Consensus        96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~en  175 (325)
                      ..++++++.+++|  +.|+||+|+|||||++++++...                      ..         ++..+..+.
T Consensus        39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~----------------------~~---------f~~is~~~~   85 (476)
T 2ce7_A           39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEAN----------------------VP---------FFHISGSDF   85 (476)
T ss_dssp             HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHT----------------------CC---------EEEEEGGGT
T ss_pred             HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcC----------------------CC---------eeeCCHHHH
Confidence            3677788888887  88999999999999999998321                      00         011111111


Q ss_pred             HhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCC----------
Q 020527          176 IMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEAT----------  245 (325)
Q Consensus       176 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPt----------  245 (325)
                      +..                          +. +          +|++++|-.+++|....|.+|++||+.          
T Consensus        86 ~~~--------------------------~~-g----------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~  128 (476)
T 2ce7_A           86 VEL--------------------------FV-G----------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGL  128 (476)
T ss_dssp             TTC--------------------------CT-T----------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC-----
T ss_pred             HHH--------------------------Hh-c----------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhccccc
Confidence            000                          00 1          367889999999999999999999994          


Q ss_pred             CCCCHHHHHHHHHHHHHhhcc-CCCCeEEEEEecCchHH
Q 020527          246 SALDSESEHYVKGVLHALRND-CKTKRTVIVIAHRLSTI  283 (325)
Q Consensus       246 s~LD~~~~~~i~~~l~~l~~~-~~~g~tvi~vtH~~~~~  283 (325)
                      ++.|......+.+++..+..- ...+..||.+||+++.+
T Consensus       129 ~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L  167 (476)
T 2ce7_A          129 GGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL  167 (476)
T ss_dssp             ----CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred             CcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence            466776666666666655310 02367899999998643

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.76  E-value=2e-09  Score=92.74  Aligned_cols=63  Identities=14%  Similarity=0.160  Sum_probs=41.2

Q ss_pred             EEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc
Q 020527          103 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL  168 (325)
Q Consensus       103 l~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~  168 (325)
                      ++|++|++++|+|||||||||++++|++++.|+.| +.+ +....... ......++|+||++..|
T Consensus         1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~~~   63 (207)
T 2j41_A            1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRDAF   63 (207)
T ss_dssp             ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHHHH
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHHHH
Confidence            46889999999999999999999999999977655 112 12211111 11123478888876443

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=98.74  E-value=4.8e-11  Score=117.44  Aligned_cols=140  Identities=16%  Similarity=0.172  Sum_probs=95.3

Q ss_pred             EEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 020527           81 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF  160 (325)
Q Consensus        81 ~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~  160 (325)
                      +++++...|..   ..+++++++.+++|  +.|+||||+|||||+++|++...  .+.+.+++.++.........+++..
T Consensus        42 ~l~~lv~~l~~---~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~  114 (499)
T 2dhr_A           42 ELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD  114 (499)
T ss_dssp             HHHHHHHHHHC---GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHH
T ss_pred             HHHHHHHHhhc---hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHH
Confidence            34455444532   25889999999999  99999999999999999999875  7899999988755433333456778


Q ss_pred             EccCCc-Cc-cccHHHHH-hcCCCCCC----CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 020527          161 VGQEPQ-LL-QMDIKSNI-MYGCPKDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL  233 (325)
Q Consensus       161 v~Q~~~-l~-~~tv~enl-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~  233 (325)
                      +||... .. ...+.|++ .++.....    ..+.....     +..++.             .||||++|+..+++|..
T Consensus       115 lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~-----l~~LL~-------------~Ldg~~~~~~viviAat  176 (499)
T 2dhr_A          115 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT-----LNQLLV-------------EMDGFEKDTAIVVMAAT  176 (499)
T ss_dssp             HTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHH-----HHHHHH-------------HGGGCCSSCCCEEEECC
T ss_pred             HHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHH-----HHHHHH-------------HhcccccCccEEEEEec
Confidence            888764 23 34667777 34321110    11111111     122232             27899999999999999


Q ss_pred             CCCCEEEEeCCCCC
Q 020527          234 RDPAILLLDEATSA  247 (325)
Q Consensus       234 ~~p~llllDEPts~  247 (325)
                      ++|++  ||||.-.
T Consensus       177 n~p~~--LD~aLlr  188 (499)
T 2dhr_A          177 NRPDI--LDPALLR  188 (499)
T ss_dssp             SCGGG--SCTTTSS
T ss_pred             CChhh--cCccccc
Confidence            99987  7998763

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.74  E-value=2.4e-09  Score=99.72  Aligned_cols=79  Identities=14%  Similarity=0.162  Sum_probs=60.0

Q ss_pred             eeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCH----HHH-----hcceEEE-ccCCcC
Q 020527           98 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI----RWL-----REKIGFV-GQEPQL  167 (325)
Q Consensus        98 L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~----~~~-----r~~i~~v-~Q~~~l  167 (325)
                      ++++||++++|++++++|+||+||||++..|++.+.+..|+|.+.+.|+.....    ..+     +..+.++ +|....
T Consensus        95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~  174 (320)
T 1zu4_A           95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNA  174 (320)
T ss_dssp             -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTC
T ss_pred             ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCC
Confidence            478999999999999999999999999999999999999999998877643221    233     5578899 665443


Q ss_pred             cc-ccHHHHH
Q 020527          168 LQ-MDIKSNI  176 (325)
Q Consensus       168 ~~-~tv~enl  176 (325)
                      .+ .++++++
T Consensus       175 ~p~~~~~~~l  184 (320)
T 1zu4_A          175 DPASVVFDAI  184 (320)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            32 2444444

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.73  E-value=7.5e-10  Score=94.23  Aligned_cols=35  Identities=17%  Similarity=0.204  Sum_probs=29.9

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHcCCCC-CCCeEEE
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYI  141 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-~~G~I~i  141 (325)
                      +|++++|+||||||||||+++|++++++ ..|.|..
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~   39 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH   39 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence            6899999999999999999999998874 4566544

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.71  E-value=2e-09  Score=93.32  Aligned_cols=71  Identities=24%  Similarity=0.360  Sum_probs=54.7

Q ss_pred             EEeeCCcEEEEEcCCCChHHHHHHHHHcCCC-------------CCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCcc
Q 020527          103 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-------------PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ  169 (325)
Q Consensus       103 l~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~-------------~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~  169 (325)
                      +...+|++++|+||||||||||++.|++.++             |..|+  ++|.+..-.+...+++.+   .|+..++.
T Consensus        14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle~   88 (197)
T 3ney_A           14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLEF   88 (197)
T ss_dssp             --CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEEE
T ss_pred             CCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhhh
Confidence            3445899999999999999999999999876             67787  688776656666666554   56666777


Q ss_pred             ccHHHHHhcC
Q 020527          170 MDIKSNIMYG  179 (325)
Q Consensus       170 ~tv~enl~~~  179 (325)
                      .++.+| .||
T Consensus        89 ~~~~~n-~YG   97 (197)
T 3ney_A           89 GSYQGN-MFG   97 (197)
T ss_dssp             EEETTE-EEE
T ss_pred             hhhhce-ecc
Confidence            888888 466

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.70  E-value=5.3e-10  Score=96.64  Aligned_cols=61  Identities=33%  Similarity=0.428  Sum_probs=46.8

Q ss_pred             EEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeE--EECCEeCC
Q 020527           83 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI--YIDGFPLT  147 (325)
Q Consensus        83 ~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I--~i~g~~i~  147 (325)
                      +|+++.++.   ..+.+..++..++|++++|+|||||||||++++|++.+. ..|.+  +++|.++.
T Consensus         3 ~~~~~~~~~---~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~   65 (200)
T 3uie_A            3 TNIKWHECS---VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR   65 (200)
T ss_dssp             -------CC---CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred             CCCcccccc---cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence            456666543   357888899899999999999999999999999999988 78988  88876653

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=98.70  E-value=7.9e-09  Score=97.90  Aligned_cols=146  Identities=17%  Similarity=0.239  Sum_probs=81.0

Q ss_pred             CCcE-EEEEcCCCChHHHHHHHHHcCCC-----------CCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-c--cc
Q 020527          107 ANEV-VAIVGLSGSGKSTFVNLLLRLYE-----------PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-Q--MD  171 (325)
Q Consensus       107 ~Ge~-~~iiG~nGsGKSTLl~~l~gl~~-----------~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~--~t  171 (325)
                      .|-. ++|+|++|||||||++.|+|...           |..|.|.++|.++.      +....|++.+.|.-. .  .+
T Consensus       177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~  250 (364)
T 2qtf_A          177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFV  250 (364)
T ss_dssp             --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHH
Confidence            3444 99999999999999999999876           56799999987652      123456666544211 1  11


Q ss_pred             HHHHH------hcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccc---cC-CCCCChHHHHHHHHH----HHH-cCCC
Q 020527          172 IKSNI------MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETL---VD-DDLLSGGQKQRIAIA----RAI-LRDP  236 (325)
Q Consensus       172 v~enl------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~LSgGq~QRv~iA----ral-~~~p  236 (325)
                      ..+.+      .+...............+  ...+.+..+.......   .+ ...+|+|++||+.++    +++ ..+|
T Consensus       251 tl~~~~~aD~il~VvD~s~~~~~~~~~~~--~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~  328 (364)
T 2qtf_A          251 TLSEAKYSDALILVIDSTFSENLLIETLQ--SSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIF  328 (364)
T ss_dssp             HHHGGGGSSEEEEEEETTSCHHHHHHHHH--HHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEE
T ss_pred             HHHHHHhCCEEEEEEECCCCcchHHHHHH--HHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCC
Confidence            12222      111110111100111111  1122232221110000   01 134788888988877    666 5455


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHhh
Q 020527          237 AILLLDEATSALDSESEHYVKGVLHALR  264 (325)
Q Consensus       237 ~llllDEPts~LD~~~~~~i~~~l~~l~  264 (325)
                      ++    +|+|++|......+++.|.++.
T Consensus       329 ~~----~~~SA~~g~gi~~L~~~I~~~l  352 (364)
T 2qtf_A          329 DV----IPISALKRTNLELLRDKIYQLA  352 (364)
T ss_dssp             EE----EECBTTTTBSHHHHHHHHHHHH
T ss_pred             cE----EEEECCCCcCHHHHHHHHHHHh
Confidence            55    7999999999999998887754

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.58  E-value=2.2e-08  Score=86.26  Aligned_cols=45  Identities=20%  Similarity=0.186  Sum_probs=24.9

Q ss_pred             ECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527           88 HYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus        88 ~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      +|+..+...+++|+||++++|++++|+|++||||||+.+.|++.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A            5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            343333457999999999999999999999999999999999765

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=98.55  E-value=1.5e-08  Score=87.56  Aligned_cols=70  Identities=20%  Similarity=0.196  Sum_probs=42.8

Q ss_pred             CChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHH---HhcCEEEEEeC
Q 020527          218 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI---KAVDRIVVIDD  294 (325)
Q Consensus       218 LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~---~~~d~v~~l~~  294 (325)
                      .|.|+.+|..+++.+..+|+.+..+  .+.++|.....+.+.+...     .+.++|+.+|.+...   ..||.+++++.
T Consensus        60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-----~~~~vv~~~~~l~e~~~~~~~d~vi~l~~  132 (206)
T 1jjv_A           60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-----TAPYTLFVVPLLIENKLTALCDRILVVDV  132 (206)
T ss_dssp             ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-----CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred             ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-----CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence            3688999999999888887644332  3455666665555544432     244788888987654   35899999864

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=98.53  E-value=1.4e-07  Score=88.36  Aligned_cols=129  Identities=12%  Similarity=0.126  Sum_probs=80.8

Q ss_pred             ceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHH
Q 020527           97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI  176 (325)
Q Consensus        97 iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl  176 (325)
                      -|+.+.--+.+|+.+.|.|++|+|||||+.-++.-.....+.                   +.|+.=     .++..+-.
T Consensus        35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~-------------------Vl~fSl-----Ems~~ql~   90 (338)
T 4a1f_A           35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRG-------------------VAVFSL-----EMSAEQLA   90 (338)
T ss_dssp             HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCE-------------------EEEEES-----SSCHHHHH
T ss_pred             HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCe-------------------EEEEeC-----CCCHHHHH
Confidence            455555468999999999999999999998887643322222                   333221     12221111


Q ss_pred             hcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHH
Q 020527          177 MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV  256 (325)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i  256 (325)
                                .++........+..+..            ..||.+++||+..|...+.+++++|.|+|...+|     .+
T Consensus        91 ----------~Rlls~~~~v~~~~l~~------------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~-----~i  143 (338)
T 4a1f_A           91 ----------LRALSDLTSINMHDLES------------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE-----QI  143 (338)
T ss_dssp             ----------HHHHHHHHCCCHHHHHH------------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH-----HH
T ss_pred             ----------HHHHHHhhCCCHHHHhc------------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH-----HH
Confidence                      01111111222223222            2489999999999999999999999999875533     45


Q ss_pred             HHHHHHhhccCCC-CeEEEEEec
Q 020527          257 KGVLHALRNDCKT-KRTVIVIAH  278 (325)
Q Consensus       257 ~~~l~~l~~~~~~-g~tvi~vtH  278 (325)
                      ...++++.++  . |..+|+|-|
T Consensus       144 ~~~ir~l~~~--~gg~~lIVIDy  164 (338)
T 4a1f_A          144 RLQLRKLKSQ--HKELGIAFIDY  164 (338)
T ss_dssp             HHHHHHHHHH--CTTEEEEEEEE
T ss_pred             HHHHHHHHHh--cCCCCEEEEec
Confidence            5566666543  3 678888854

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=98.53  E-value=7.4e-08  Score=99.71  Aligned_cols=68  Identities=16%  Similarity=0.168  Sum_probs=52.4

Q ss_pred             CCChHHHHHHHHHHHHcCCCCEEEEeCCCC-CCCHHHHHHHHHHHHHhhccCCCCeEEEE-EecCchHHH-hcC
Q 020527          217 LLSGGQKQRIAIARAILRDPAILLLDEATS-ALDSESEHYVKGVLHALRNDCKTKRTVIV-IAHRLSTIK-AVD  287 (325)
Q Consensus       217 ~LSgGq~QRv~iAral~~~p~llllDEPts-~LD~~~~~~i~~~l~~l~~~~~~g~tvi~-vtH~~~~~~-~~d  287 (325)
                      -+|.|+.+|..++++++.+++++|+|||.. +||......+++.+....   ...+++++ +||+.+.+. .++
T Consensus       190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~---~~~~iIl~SAT~~~~~l~~~~~  260 (773)
T 2xau_A          190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR---PDLKIIIMSATLDAEKFQRYFN  260 (773)
T ss_dssp             EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC---TTCEEEEEESCSCCHHHHHHTT
T ss_pred             EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhC---CCceEEEEeccccHHHHHHHhc
Confidence            379999999999999999999999999997 999876655555554443   23467777 499988764 354

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=98.48  E-value=2e-07  Score=87.75  Aligned_cols=61  Identities=16%  Similarity=0.121  Sum_probs=47.5

Q ss_pred             CCCChHHHHHHHHHHHHcCCCCEEEEe-CCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEe--cCch
Q 020527          216 DLLSGGQKQRIAIARAILRDPAILLLD-EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIA--HRLS  281 (325)
Q Consensus       216 ~~LSgGq~QRv~iAral~~~p~llllD-EPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vt--H~~~  281 (325)
                      ..+|+|++|++. +.+...++-++++| +|++++|......+++.+....    .++.+|+|.  ||+.
T Consensus       230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~----~~~piilV~NK~Dl~  293 (357)
T 2e87_A          230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF----KDLPFLVVINKIDVA  293 (357)
T ss_dssp             TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT----TTSCEEEEECCTTTC
T ss_pred             hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc----CCCCEEEEEECcccC
Confidence            357999999886 66666778899999 9999999988877777666553    256788888  8874

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.45  E-value=1.8e-08  Score=84.74  Aligned_cols=38  Identities=26%  Similarity=0.442  Sum_probs=33.5

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCC
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT  147 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~  147 (325)
                      .+|++++|+|+|||||||++++|++.+    |.+.+++.++.
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~   43 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH   43 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence            468999999999999999999999875    88999887654

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.41  E-value=5.8e-08  Score=83.86  Aligned_cols=45  Identities=24%  Similarity=0.214  Sum_probs=39.1

Q ss_pred             eeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCC
Q 020527          105 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL  149 (325)
Q Consensus       105 i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~  149 (325)
                      .++|++++|+|+||||||||+++|++++++..|.|.+.+.+....
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~   63 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIV   63 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCC
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccC
Confidence            567999999999999999999999999998899998876665433

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.41  E-value=7.2e-08  Score=85.11  Aligned_cols=62  Identities=23%  Similarity=0.158  Sum_probs=47.5

Q ss_pred             EEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCC------CHHH----HhcceEEEccCCcCc
Q 020527          103 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL------DIRW----LREKIGFVGQEPQLL  168 (325)
Q Consensus       103 l~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~------~~~~----~r~~i~~v~Q~~~l~  168 (325)
                      .+.++|++++|.|+||||||||+++|+|+    .|+|.+.+.+....      ....    .++.+++++|.+.++
T Consensus        15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~   86 (230)
T 2vp4_A           15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTL   86 (230)
T ss_dssp             TTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHH
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHH
Confidence            35588999999999999999999999997    78999998765321      1111    135688889887654

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=98.39  E-value=2.2e-06  Score=80.48  Aligned_cols=49  Identities=10%  Similarity=0.078  Sum_probs=35.1

Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHH
Q 020527          234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI  283 (325)
Q Consensus       234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~  283 (325)
                      .+|.++++||+... |+.....+.+.+.++......+.++|++||+.+..
T Consensus       124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~  172 (389)
T 1fnn_A          124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL  172 (389)
T ss_dssp             TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred             CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence            45889999999876 88877777777655532101367899999988543

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=98.30  E-value=4.2e-07  Score=78.43  Aligned_cols=45  Identities=18%  Similarity=0.235  Sum_probs=38.1

Q ss_pred             EEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccc
Q 020527          103 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQM  170 (325)
Q Consensus       103 l~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~  170 (325)
                      -++++|++++|+|++||||||+++.|++.++                       .+.+++|++.+++.
T Consensus        16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~   60 (207)
T 2qt1_A           16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE   60 (207)
T ss_dssp             CCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG
T ss_pred             ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH
Confidence            3678899999999999999999999999874                       37788888776643

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.29  E-value=3.8e-07  Score=79.20  Aligned_cols=29  Identities=28%  Similarity=0.382  Sum_probs=27.5

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcCCCC
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRLYEP  134 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~  134 (325)
                      ++|++++|+||||||||||++.|++.+++
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~   34 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPET   34 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence            57999999999999999999999999986

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.28  E-value=2e-07  Score=92.83  Aligned_cols=61  Identities=30%  Similarity=0.343  Sum_probs=47.0

Q ss_pred             EeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCC-eEE-ECCEeCCC-------CCHH---HHhcceEEEccC
Q 020527          104 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QIY-IDGFPLTD-------LDIR---WLREKIGFVGQE  164 (325)
Q Consensus       104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G-~I~-i~g~~i~~-------~~~~---~~r~~i~~v~Q~  164 (325)
                      .+++|++++|+|+||||||||+++|++.+.|++| ++. ++|.++..       ++..   ..++++++++|+
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~  437 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASE  437 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHH
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999987 785 88866521       1211   233457777775

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.26  E-value=8.7e-08  Score=89.10  Aligned_cols=44  Identities=23%  Similarity=0.358  Sum_probs=36.2

Q ss_pred             CceeeeeEEeeCCc------EEEEEcCCCChHHHHHHHHHcCCC--CCCCeE
Q 020527           96 PILNHVCLTIEANE------VVAIVGLSGSGKSTFVNLLLRLYE--PSDGQI  139 (325)
Q Consensus        96 ~iL~~isl~i~~Ge------~~~iiG~nGsGKSTLl~~l~gl~~--~~~G~I  139 (325)
                      ..|++++..+.+++      ++||+||||||||||+++|.+++.  |++|.+
T Consensus        74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v  125 (321)
T 3tqc_A           74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNV  125 (321)
T ss_dssp             HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCE
T ss_pred             HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeE
Confidence            46777777777766      999999999999999999999987  345543

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=98.24  E-value=5.5e-07  Score=84.45  Aligned_cols=28  Identities=21%  Similarity=0.248  Sum_probs=25.6

Q ss_pred             EeeCCcEEEEEcCCCChHHHHHHHHHcC
Q 020527          104 TIEANEVVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      -+++|+++.|.||+|||||||+..++..
T Consensus       118 Gl~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          118 GIESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999999988874

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=98.21  E-value=4.2e-07  Score=84.48  Aligned_cols=28  Identities=29%  Similarity=0.354  Sum_probs=25.3

Q ss_pred             EeeCCcEEEEEcCCCChHHHHHHHHHcC
Q 020527          104 TIEANEVVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      -+++|+++.|.||+|||||||+..++.-
T Consensus       103 Gl~~G~i~~i~G~~GsGKT~la~~la~~  130 (324)
T 2z43_A          103 GIETRTMTEFFGEFGSGKTQLCHQLSVN  130 (324)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence            5799999999999999999999888754

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=98.18  E-value=2.1e-07  Score=92.68  Aligned_cols=60  Identities=10%  Similarity=0.208  Sum_probs=47.7

Q ss_pred             EEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEe
Q 020527           82 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP  145 (325)
Q Consensus        82 ~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~  145 (325)
                      ++++.+.|..   ..++.++++++ +|+.++|+||||+|||||+++|++.+.+..|+|.++|..
T Consensus        86 ~~~vk~~i~~---~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~  145 (543)
T 3m6a_A           86 LEKVKERILE---YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVR  145 (543)
T ss_dssp             CHHHHHHHHH---HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--
T ss_pred             HHHHHHHHHH---HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccc
Confidence            3444444432   24778888888 799999999999999999999999999999999887743

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=98.18  E-value=6.4e-07  Score=82.43  Aligned_cols=145  Identities=19%  Similarity=0.173  Sum_probs=76.3

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEEC-CEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCH
Q 020527          108 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID-GFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKN  186 (325)
Q Consensus       108 Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~-g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~  186 (325)
                      +.+++|+|++|+|||||++.|.|..      +.+. +.+-.     ...+..++++++..-+  ++.|.  -|    ...
T Consensus         8 ~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~~t-----Tr~~~~gi~~~~~~~i--~~iDT--pG----~~~   68 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKAQT-----TRHRIVGIHTEGAYQA--IYVDT--PG----LHM   68 (301)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCSSC-----CSSCEEEEEEETTEEE--EEESS--SS----CCH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCCCc-----ceeeEEEEEEECCeeE--EEEEC--cC----CCc
Confidence            3489999999999999999999963      2221 11111     1134467777764311  11110  01    110


Q ss_pred             HHHHHHHHHcCHHHHHHhCCC---Cccc---ccCCCCCChHHHHHHHHHHHHc--CCCCEEEEeCCCCCCCHHH-HHHHH
Q 020527          187 EDIEWAAKQAYVHEFILSLPC---GYET---LVDDDLLSGGQKQRIAIARAIL--RDPAILLLDEATSALDSES-EHYVK  257 (325)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~LSgGq~QRv~iAral~--~~p~llllDEPts~LD~~~-~~~i~  257 (325)
                      .. ...+..    .+......   ..+.   ......+|+|++   .+++++.  ..|.++++    +.+|... ...+.
T Consensus        69 ~~-~~~l~~----~~~~~~~~~l~~~D~vl~Vvd~~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~  136 (301)
T 1ega_A           69 EE-KRAINR----LMNKAASSSIGDVELVIFVVEGTRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLL  136 (301)
T ss_dssp             HH-HHHHHH----HHTCCTTSCCCCEEEEEEEEETTCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHH
T ss_pred             cc-hhhHHH----HHHHHHHHHHhcCCEEEEEEeCCCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHH
Confidence            00 011110    01000000   0010   011223898886   5566666  78899998    7899876 66677


Q ss_pred             HHHHHhhccCCCCeEEEEEecCchHH
Q 020527          258 GVLHALRNDCKTKRTVIVIAHRLSTI  283 (325)
Q Consensus       258 ~~l~~l~~~~~~g~tvi~vtH~~~~~  283 (325)
                      +.+.++.+.......+.+++|+-.-+
T Consensus       137 ~~l~~l~~~~~~~~~i~iSA~~g~~v  162 (301)
T 1ega_A          137 PHLQFLASQMNFLDIVPISAETGLNV  162 (301)
T ss_dssp             HHHHHHHTTSCCSEEEECCTTTTTTH
T ss_pred             HHHHHHHHhcCcCceEEEECCCCCCH
Confidence            88888765321123566677765443

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.14  E-value=2.1e-06  Score=80.12  Aligned_cols=31  Identities=29%  Similarity=0.453  Sum_probs=26.6

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcCCCCCC
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSD  136 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~  136 (325)
                      ..+..+.|.||+|+|||||++.+++..++..
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~   73 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF   73 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHHHHHT
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence            4577899999999999999999998776543

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=98.11  E-value=3.4e-07  Score=86.68  Aligned_cols=53  Identities=13%  Similarity=0.148  Sum_probs=47.8

Q ss_pred             ccEEEEEEEEECCCCCCCCcee--------------eeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527           78 GHVQFVNISFHYPSRPTVPILN--------------HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus        78 ~~i~~~~v~~~y~~~~~~~iL~--------------~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      +.+.++|+++.|+..  +..|+              |+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus       132 ~ri~Fe~ltp~yP~e--r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i  198 (422)
T 3ice_A          132 NKILFENLTPLHANS--RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI  198 (422)
T ss_dssp             TSCCTTTSCEESCCS--BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred             CCceeccccccCCCC--ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence            358899999999864  56888              899999999999999999999999999999875

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=98.10  E-value=2.3e-05  Score=71.10  Aligned_cols=75  Identities=19%  Similarity=0.246  Sum_probs=46.5

Q ss_pred             ChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHhhccC-CCCeEEEEEecCchH-----
Q 020527          219 SGGQKQRIAIARAILRDPAILLLDEATSALDSE----------SEHYVKGVLHALRNDC-KTKRTVIVIAHRLST-----  282 (325)
Q Consensus       219 SgGq~QRv~iAral~~~p~llllDEPts~LD~~----------~~~~i~~~l~~l~~~~-~~g~tvi~vtH~~~~-----  282 (325)
                      +++++.|..++++...+|.+|++||+.+-++..          ....++..+....... ..+..+|.+|++++.     
T Consensus        97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l  176 (297)
T 3b9p_A           97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA  176 (297)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred             hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence            467778888888888999999999998776532          2223444444432110 124567778887542     


Q ss_pred             HHhcCEEEEEe
Q 020527          283 IKAVDRIVVID  293 (325)
Q Consensus       283 ~~~~d~v~~l~  293 (325)
                      ..++++++.+.
T Consensus       177 ~~R~~~~i~~~  187 (297)
T 3b9p_A          177 LRRFTKRVYVS  187 (297)
T ss_dssp             HHHCCEEEECC
T ss_pred             HhhCCeEEEeC
Confidence            23577766554

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.09  E-value=3.4e-07  Score=85.73  Aligned_cols=51  Identities=18%  Similarity=0.216  Sum_probs=45.9

Q ss_pred             CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeC
Q 020527           96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL  146 (325)
Q Consensus        96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i  146 (325)
                      .+++++++.+.+|.+++|+|++|||||||++.|++.+.+..|+|.+-+.+.
T Consensus        44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~   94 (341)
T 2p67_A           44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP   94 (341)
T ss_dssp             HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence            478899999999999999999999999999999999988888888866655

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.08  E-value=7.3e-06  Score=79.07  Aligned_cols=40  Identities=23%  Similarity=0.336  Sum_probs=35.7

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeC
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL  146 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i  146 (325)
                      ++.+++++||+||||||++..|++.+.+..++|.+-+.|.
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~  135 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV  135 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence            5789999999999999999999999998888898866664

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=98.08  E-value=9.2e-06  Score=75.10  Aligned_cols=130  Identities=14%  Similarity=0.212  Sum_probs=76.4

Q ss_pred             CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHH
Q 020527           96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSN  175 (325)
Q Consensus        96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~en  175 (325)
                      +.|+.+.--+++|+++.|.|++|+|||||+..++.-.-. .|                  ..+.|+.-+     ++..+-
T Consensus        56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g------------------~~vl~~slE-----~s~~~l  111 (315)
T 3bh0_A           56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND------------------DVVNLHSLE-----MGKKEN  111 (315)
T ss_dssp             HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT------------------CEEEEEESS-----SCHHHH
T ss_pred             HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC------------------CeEEEEECC-----CCHHHH
Confidence            356776656899999999999999999999877742210 11                  124443321     222111


Q ss_pred             HhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCC--CChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHH
Q 020527          176 IMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESE  253 (325)
Q Consensus       176 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~  253 (325)
                      .          .++........+..+..            ..  ||.++++|+..|...+.++++++.|+|...+     
T Consensus       112 ~----------~R~~~~~~~i~~~~l~~------------~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~-----  164 (315)
T 3bh0_A          112 I----------KRLIVTAGSINAQKIKA------------ARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSV-----  164 (315)
T ss_dssp             H----------HHHHHHHTTCCHHHHHS------------CHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBH-----
T ss_pred             H----------HHHHHHHcCCCHHHHhc------------CCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCH-----
Confidence            1          00000111111222210            12  7899999999999888889999999886442     


Q ss_pred             HHHHHHHHHhhccCCCCeE--EEEEec
Q 020527          254 HYVKGVLHALRNDCKTKRT--VIVIAH  278 (325)
Q Consensus       254 ~~i~~~l~~l~~~~~~g~t--vi~vtH  278 (325)
                      ..+.+.++++.++  .+..  +|+|-|
T Consensus       165 ~~i~~~i~~l~~~--~~~~~~lVVID~  189 (315)
T 3bh0_A          165 NYIWSKTRQTKRK--NPGKRVIVMIDY  189 (315)
T ss_dssp             HHHHHHHHHHHHT--SSSCCEEEEEEC
T ss_pred             HHHHHHHHHHHHh--cCCCCeEEEEeC
Confidence            2345555655443  3555  777754

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.06  E-value=1.5e-06  Score=72.47  Aligned_cols=33  Identities=27%  Similarity=0.360  Sum_probs=27.7

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECC
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG  143 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g  143 (325)
                      .|++++|+|||||||||++++|++.+.+    +++++
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~   35 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS   35 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence            4788999999999999999999998753    45553

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=98.05  E-value=5.5e-06  Score=80.22  Aligned_cols=44  Identities=14%  Similarity=0.313  Sum_probs=35.5

Q ss_pred             CCCCEEEEeCCCCCCCH-HHHHHHHHHHHHhhccCCCCeEEEEEecCc
Q 020527          234 RDPAILLLDEATSALDS-ESEHYVKGVLHALRNDCKTKRTVIVIAHRL  280 (325)
Q Consensus       234 ~~p~llllDEPts~LD~-~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~  280 (325)
                      .+|++|++||+..-.+. .++..++..+..+.+   .|+.+|++||+.
T Consensus       193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~---~~~~iIitt~~~  237 (440)
T 2z4s_A          193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHD---SGKQIVICSDRE  237 (440)
T ss_dssp             TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT---TTCEEEEEESSC
T ss_pred             CCCCEEEEeCcccccCChHHHHHHHHHHHHHHH---CCCeEEEEECCC
Confidence            48999999999877664 677778888888764   477899999974

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=98.04  E-value=2.3e-06  Score=82.75  Aligned_cols=67  Identities=31%  Similarity=0.394  Sum_probs=40.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCCC------------CCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCcc-ccHHHHH
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLYE------------PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNI  176 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~~------------~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~tv~enl  176 (325)
                      .++|+|+||+|||||++.|+|...            +.+|.+.++|.++.-++..-.++..++.+|....|. .+..+++
T Consensus       182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i  261 (439)
T 1mky_A          182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI  261 (439)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence            799999999999999999999854            678999999987643333223444455556554442 3444444

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=98.01  E-value=9.4e-07  Score=74.43  Aligned_cols=40  Identities=30%  Similarity=0.314  Sum_probs=32.8

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcCCCCCCC--eEEECCEeC
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG--QIYIDGFPL  146 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G--~I~i~g~~i  146 (325)
                      ++|++++|+|++||||||+.++|++.+++ .|  .+.+++..+
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~   44 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI   44 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence            46899999999999999999999998866 56  666665443

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.97  E-value=1.8e-06  Score=81.19  Aligned_cols=42  Identities=19%  Similarity=0.298  Sum_probs=36.5

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCC
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT  147 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~  147 (325)
                      +++.+++|+|++|||||||++.|+|.+.+..|+|.+.+.+..
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~  113 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS  113 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence            457899999999999999999999999888999988776553

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.96  E-value=4.4e-06  Score=68.75  Aligned_cols=32  Identities=25%  Similarity=0.504  Sum_probs=26.2

Q ss_pred             eeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHc
Q 020527           98 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus        98 L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      +++.++++.+| +.+|+|||||||||++.+|.-
T Consensus        14 ~~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~   45 (149)
T 1f2t_A           14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAILV   45 (149)
T ss_dssp             BSSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence            34556667665 899999999999999999873

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.93  E-value=6.8e-05  Score=65.90  Aligned_cols=28  Identities=32%  Similarity=0.389  Sum_probs=24.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCCCCCCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLYEPSDG  137 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~~~~~G  137 (325)
                      .++|+|++|+|||||++.|+|...+.++
T Consensus        31 ~i~lvG~~g~GKStlin~l~g~~~~~~~   58 (239)
T 3lxx_A           31 RIVLVGKTGAGKSATGNSILGRKVFHSG   58 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence            5899999999999999999997766555

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.92  E-value=4.5e-06  Score=73.71  Aligned_cols=45  Identities=22%  Similarity=0.298  Sum_probs=32.5

Q ss_pred             ceeeeeEEee---CCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEEC
Q 020527           97 ILNHVCLTIE---ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID  142 (325)
Q Consensus        97 iL~~isl~i~---~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~  142 (325)
                      -|.++|+.+.   +|.+++|.|++||||||+++.|+..+.+ .+.+...
T Consensus        12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~   59 (229)
T 4eaq_A           12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT   59 (229)
T ss_dssp             --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred             CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence            4666666665   8999999999999999999999999887 6666554

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.85  E-value=2.4e-05  Score=71.59  Aligned_cols=29  Identities=17%  Similarity=0.280  Sum_probs=26.2

Q ss_pred             EeeCCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          104 TIEANEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++++..+.|.||+|+|||||++++++..
T Consensus        45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~   73 (301)
T 3cf0_A           45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC   73 (301)
T ss_dssp             CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred             CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence            46788899999999999999999999865

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.84  E-value=2.6e-06  Score=73.78  Aligned_cols=43  Identities=28%  Similarity=0.247  Sum_probs=37.2

Q ss_pred             EEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCC--eEEECCEe
Q 020527          103 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG--QIYIDGFP  145 (325)
Q Consensus       103 l~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G--~I~i~g~~  145 (325)
                      +.+++|.+++|+|++||||||+.+.|++.+.|..|  .+.+++..
T Consensus        20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~   64 (211)
T 1m7g_A           20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN   64 (211)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred             ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence            44678999999999999999999999999987888  78887543

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.80  E-value=5.5e-06  Score=79.78  Aligned_cols=60  Identities=18%  Similarity=0.196  Sum_probs=50.2

Q ss_pred             EEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCC
Q 020527           81 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT  147 (325)
Q Consensus        81 ~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~  147 (325)
                      ..+++++.|+..   .  ++++|+  +|++++++|+|||||||++..|++.+.+..|+|.+.+.|+.
T Consensus        78 v~~~L~~~~~~~---~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~  137 (425)
T 2ffh_A           78 VYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ  137 (425)
T ss_dssp             HHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSS
T ss_pred             HHHHHHHHhCCC---c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecccc
Confidence            345677778642   1  678887  89999999999999999999999999999999999887754

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.78  E-value=4.6e-06  Score=71.32  Aligned_cols=56  Identities=21%  Similarity=0.444  Sum_probs=38.2

Q ss_pred             EECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcC--------CCCCCCeEEECCEe
Q 020527           87 FHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--------YEPSDGQIYIDGFP  145 (325)
Q Consensus        87 ~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl--------~~~~~G~I~i~g~~  145 (325)
                      ++|++-  ..+++++|+..+++ .++++|++|+|||||++.+.+-        ..++.+.+.++|..
T Consensus         7 ~~~~~~--~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~   70 (198)
T 1f6b_A            7 WIYSGF--SSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT   70 (198)
T ss_dssp             --------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEE
T ss_pred             HHHHHH--HHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEE
Confidence            456543  35899999998887 5789999999999999999862        22344566666543

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.76  E-value=1.7e-05  Score=67.17  Aligned_cols=34  Identities=24%  Similarity=0.416  Sum_probs=20.6

Q ss_pred             CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHc
Q 020527           96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus        96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      .+++++|++.++. .++++|++|+|||||++.+.+
T Consensus        12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred             HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence            3789999988877 678999999999999999997

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.75  E-value=1.8e-05  Score=66.01  Aligned_cols=27  Identities=30%  Similarity=0.332  Sum_probs=23.4

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      ++|..++|+|++|+|||||++.+++..
T Consensus         2 ~~~~ki~ivG~~g~GKStLl~~l~~~~   28 (172)
T 2gj8_A            2 SHGMKVVIAGRPNAGKSSLLNALAGRE   28 (172)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            367899999999999999999999864

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=97.73  E-value=4.8e-05  Score=70.05  Aligned_cols=43  Identities=16%  Similarity=0.274  Sum_probs=30.2

Q ss_pred             CCCCEEEEeCCCC-CCCHHHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 020527          234 RDPAILLLDEATS-ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHR  279 (325)
Q Consensus       234 ~~p~llllDEPts-~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~  279 (325)
                      .+|++|++||+-. .-+...+..+...+..+.+   .+..+|++++.
T Consensus        97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~---~~~~iii~~~~  140 (324)
T 1l8q_A           97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL---LEKQIILASDR  140 (324)
T ss_dssp             HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH---TTCEEEEEESS
T ss_pred             cCCCEEEEcCcccccCChHHHHHHHHHHHHHHH---CCCeEEEEecC
Confidence            4699999999865 2344677788888887654   35566666653

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=97.71  E-value=3.9e-05  Score=67.51  Aligned_cols=128  Identities=17%  Similarity=0.157  Sum_probs=67.5

Q ss_pred             eeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHHHHhcCCCCC
Q 020527          105 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKD  183 (325)
Q Consensus       105 i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~enl~~~~~~~  183 (325)
                      +.+|+.+++.||+||||||++.++........|.                ...++++++.|... ..++.+++.......
T Consensus        73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~~  136 (235)
T 3llm_A           73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGEE  136 (235)
T ss_dssp             HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred             HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence            3568999999999999999988764321111110                13467788877654 457777775321111


Q ss_pred             CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCC-CCCHHHHHHHHHHH
Q 020527          184 VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATS-ALDSESEHYVKGVL  260 (325)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts-~LD~~~~~~i~~~l  260 (325)
                      ..        ...+.....+.........+  ---+.|...+..  +..+.+-+++++||+-. ++|........+.+
T Consensus       137 ~~--------~~~g~~~~~~~~~~~~~~~I--vv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i  202 (235)
T 3llm_A          137 PG--------KSCGYSVRFESILPRPHASI--MFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDV  202 (235)
T ss_dssp             TT--------SSEEEEETTEEECCCSSSEE--EEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHH
T ss_pred             cC--------ceEEEeechhhccCCCCCeE--EEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHH
Confidence            00        00000000000000000000  003456665553  34689999999999976 57776653333333

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.69  E-value=4.6e-06  Score=76.63  Aligned_cols=61  Identities=20%  Similarity=0.248  Sum_probs=49.8

Q ss_pred             EEEEEEEECCCCCCCCceee-eeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCC
Q 020527           81 QFVNISFHYPSRPTVPILNH-VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT  147 (325)
Q Consensus        81 ~~~~v~~~y~~~~~~~iL~~-isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~  147 (325)
                      ..+++.+.|++.   .  ++ ++++.+ |++++++|+||+||||++..|++.+.+..|+|.+.+.+..
T Consensus        76 ~~~~l~~~~~~~---~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~  137 (297)
T 1j8m_F           76 VYDELSNLFGGD---K--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY  137 (297)
T ss_dssp             HHHHHHHHTTCS---C--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred             HHHHHHHHhccc---c--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            455666677643   1  56 788876 9999999999999999999999999988899999877754

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.67  E-value=0.00032  Score=65.89  Aligned_cols=28  Identities=25%  Similarity=0.367  Sum_probs=24.9

Q ss_pred             eeCCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          105 IEANEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       105 i~~Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      +++|+++.|.|++|+|||||...++.-.
T Consensus        60 l~~G~ii~I~G~pGsGKTtLal~la~~~   87 (356)
T 1u94_A           60 LPMGRIVEIYGPESSGKTTLTLQVIAAA   87 (356)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999997777543

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=97.66  E-value=2.5e-05  Score=67.50  Aligned_cols=31  Identities=26%  Similarity=0.542  Sum_probs=25.5

Q ss_pred             eeeeeEEeeCCcEEEEEcCCCChHHHHHHHHH
Q 020527           98 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL  129 (325)
Q Consensus        98 L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~  129 (325)
                      +.+.++++.+| +.+|+|||||||||++.+|.
T Consensus        14 ~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             BSSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred             ccceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence            34556677765 99999999999999999886

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.64  E-value=0.00012  Score=65.73  Aligned_cols=28  Identities=21%  Similarity=0.343  Sum_probs=24.1

Q ss_pred             eeCCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          105 IEANEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       105 i~~Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      +.++..+.|.||+|+|||||++.++...
T Consensus        48 ~~~~~~~ll~G~~GtGKT~la~~la~~~   75 (285)
T 3h4m_A           48 IEPPKGILLYGPPGTGKTLLAKAVATET   75 (285)
T ss_dssp             CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            3566779999999999999999998754

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.63  E-value=1.4e-06  Score=81.24  Aligned_cols=50  Identities=14%  Similarity=0.201  Sum_probs=42.2

Q ss_pred             CceeeeeEEeeCCcE--EEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEe
Q 020527           96 PILNHVCLTIEANEV--VAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP  145 (325)
Q Consensus        96 ~iL~~isl~i~~Ge~--~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~  145 (325)
                      .+++.++..++.|++  +.+.||+|+||||+++++++.+.+..+.+.+.+.+
T Consensus        32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~   83 (340)
T 1sxj_C           32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN   83 (340)
T ss_dssp             HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC
T ss_pred             HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc
Confidence            589999999999998  99999999999999999999987776654444433

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.63  E-value=1.7e-05  Score=66.95  Aligned_cols=36  Identities=36%  Similarity=0.461  Sum_probs=31.5

Q ss_pred             eeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEE
Q 020527          105 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY  140 (325)
Q Consensus       105 i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~  140 (325)
                      ..+|.+++|+|++||||||+.+.|+..+.+..+.+.
T Consensus        10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~   45 (186)
T 2yvu_A           10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVE   45 (186)
T ss_dssp             CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence            457899999999999999999999998887777664

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.61  E-value=2.7e-05  Score=65.84  Aligned_cols=32  Identities=16%  Similarity=0.285  Sum_probs=26.5

Q ss_pred             eeeEEeeCCcEEEEEcCCCChHHHHHHHHHcC
Q 020527          100 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       100 ~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      ++|++..+|..++|+|++||||||+.+.|+..
T Consensus         2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            57888899999999999999999999999875

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.58  E-value=2.9e-05  Score=67.38  Aligned_cols=27  Identities=11%  Similarity=0.180  Sum_probs=24.0

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHcCCC
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      ++..+.|.||+|+|||||++.++....
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~   77 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARAN   77 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            578999999999999999999987554

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.55  E-value=2.9e-05  Score=66.79  Aligned_cols=30  Identities=23%  Similarity=0.418  Sum_probs=26.3

Q ss_pred             EeeCCcEEEEEcCCCChHHHHHHHHHcCCC
Q 020527          104 TIEANEVVAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      ...+|.+++|+||||||||||.+.|+..++
T Consensus         8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A            8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            357899999999999999999999998664

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.52  E-value=7.9e-05  Score=61.33  Aligned_cols=24  Identities=33%  Similarity=0.372  Sum_probs=21.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      .++|+|++|+|||||++.++|...
T Consensus         5 ~v~lvG~~gvGKStL~~~l~~~~~   28 (165)
T 2wji_A            5 EIALIGNPNVGKSTIFNALTGENV   28 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCe
Confidence            589999999999999999998654

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.51  E-value=5e-06  Score=78.43  Aligned_cols=56  Identities=27%  Similarity=0.278  Sum_probs=36.5

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECC
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG  143 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g  143 (325)
                      .+.++|++..|+.+   .++++++|+|      +|+|+||+|||||++.|.+...+..+.+..++
T Consensus        17 ~v~~~~l~~~~~~k---~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~   72 (361)
T 2qag_A           17 YVGFANLPNQVHRK---SVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA   72 (361)
T ss_dssp             ----CCHHHHHHTH---HHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred             eEEeccchHHhCCe---eecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence            58888998888643   5889999877      99999999999999999987666666554444

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.50  E-value=4.4e-05  Score=65.24  Aligned_cols=22  Identities=32%  Similarity=0.536  Sum_probs=20.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      +++|+|+|||||||+.+.|+++
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~~   24 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFREL   24 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHHHC
Confidence            6899999999999999999993

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=97.50  E-value=4.4e-05  Score=72.70  Aligned_cols=41  Identities=29%  Similarity=0.490  Sum_probs=33.8

Q ss_pred             EeeCCcEEEEEcCCCChHHHHHHHHHcC-----------CCCCCCeEEECCE
Q 020527          104 TIEANEVVAIVGLSGSGKSTFVNLLLRL-----------YEPSDGQIYIDGF  144 (325)
Q Consensus       104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~gl-----------~~~~~G~I~i~g~  144 (325)
                      .+..|..++|+|+||+|||||++.|+|.           ..|..|.+.+.+.
T Consensus        18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~   69 (396)
T 2ohf_A           18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE   69 (396)
T ss_dssp             CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence            3567889999999999999999999998           6678888887663

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.50  E-value=5.3e-05  Score=63.33  Aligned_cols=22  Identities=36%  Similarity=0.456  Sum_probs=20.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++|+|++|+|||||++.+++-
T Consensus         9 ~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            9 EIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999984

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=97.49  E-value=0.0004  Score=67.03  Aligned_cols=176  Identities=16%  Similarity=0.176  Sum_probs=91.6

Q ss_pred             CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCC-eEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHH
Q 020527           96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS  174 (325)
Q Consensus        96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G-~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~e  174 (325)
                      +.|+.+.--+++|+++.|.|++|+|||||+.-++.-.....| .|.+...   +.+..++..++-  .+...+-...+  
T Consensus       188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl---E~~~~~l~~R~~--~~~~~i~~~~l--  260 (444)
T 2q6t_A          188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL---EMPAAQLTLRMM--CSEARIDMNRV--  260 (444)
T ss_dssp             HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES---SSCHHHHHHHHH--HHHTTCCTTTC--
T ss_pred             HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC---CCCHHHHHHHHH--HHHcCCCHHHH--
Confidence            456777655899999999999999999999888765433223 3333211   123333322210  00000000000  


Q ss_pred             HHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc--CCCCEEEEeCCCCCCCH--
Q 020527          175 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL--RDPAILLLDEATSALDS--  250 (325)
Q Consensus       175 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~--~~p~llllDEPts~LD~--  250 (325)
                        .-+   ....+........   .+.+...+.-.   .....+|..+.  .+.+|.+.  .+|+++++|..+.-.+.  
T Consensus       261 --~~g---~l~~~~~~~~~~a---~~~l~~~~l~i---~d~~~~s~~~l--~~~~~~l~~~~~~~lIvID~l~~~~~~~~  327 (444)
T 2q6t_A          261 --RLG---QLTDRDFSRLVDV---ASRLSEAPIYI---DDTPDLTLMEV--RARARRLVSQNQVGLIIIDYLQLMSGPGS  327 (444)
T ss_dssp             --CGG---GCCHHHHHHHHHH---HHHHHTSCEEE---ECCTTCBHHHH--HHHHHHHHHHSCCCEEEEECGGGCBCC--
T ss_pred             --hCC---CCCHHHHHHHHHH---HHHHhcCCEEE---ECCCCCCHHHH--HHHHHHHHHHcCCCEEEEcChhhcCCCcC
Confidence              001   1122222221111   11222222111   11234676654  44556665  58999999999865433  


Q ss_pred             ----HH----HHHHHHHHHHhhccCCCCeEEEEEecC-------------ch------HHH-hcCEEEEEe
Q 020527          251 ----ES----EHYVKGVLHALRNDCKTKRTVIVIAHR-------------LS------TIK-AVDRIVVID  293 (325)
Q Consensus       251 ----~~----~~~i~~~l~~l~~~~~~g~tvi~vtH~-------------~~------~~~-~~d~v~~l~  293 (325)
                          .+    ...+.+.|+.++++  .+++||+++|-             ++      .++ .||.|++|.
T Consensus       328 ~~~~~~r~~~i~~i~~~Lk~lAke--~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~  396 (444)
T 2q6t_A          328 GKSGENRQQEIAAISRGLKALARE--LGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIY  396 (444)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHH--HTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEE
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHH--hCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEe
Confidence                11    23455666776654  48899999981             11      233 389999985

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.43  E-value=2e-05  Score=73.01  Aligned_cols=43  Identities=12%  Similarity=0.301  Sum_probs=32.9

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchH
Q 020527          235 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST  282 (325)
Q Consensus       235 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~  282 (325)
                      +++++++|| ...+++.....+.+.+.+..    ....+|+++++...
T Consensus       133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~----~~~~~il~~~~~~~  175 (353)
T 1sxj_D          133 PYKIIILDE-ADSMTADAQSALRRTMETYS----GVTRFCLICNYVTR  175 (353)
T ss_dssp             SCEEEEETT-GGGSCHHHHHHHHHHHHHTT----TTEEEEEEESCGGG
T ss_pred             CceEEEEEC-CCccCHHHHHHHHHHHHhcC----CCceEEEEeCchhh
Confidence            667999999 78899988888888887763    24567777776653

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.40  E-value=3.2e-05  Score=66.14  Aligned_cols=34  Identities=29%  Similarity=0.505  Sum_probs=27.1

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEe
Q 020527          108 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP  145 (325)
Q Consensus       108 Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~  145 (325)
                      ..+++|+|++||||||+.+.|++.+    |...+++.+
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~   51 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDA   51 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCc
Confidence            4689999999999999999998865    445555433

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.38  E-value=6.2e-05  Score=63.60  Aligned_cols=37  Identities=24%  Similarity=0.331  Sum_probs=29.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHcCCCCC---CCeEEECCEe
Q 020527          109 EVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFP  145 (325)
Q Consensus       109 e~~~iiG~nGsGKSTLl~~l~gl~~~~---~G~I~i~g~~  145 (325)
                      .+++|+|+||||||||++.|.+.+++.   -|.|..++.+
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~   46 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD   46 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence            589999999999999999999876543   3667776544

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.36  E-value=8.9e-05  Score=62.18  Aligned_cols=26  Identities=35%  Similarity=0.585  Sum_probs=20.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCCCCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLYEPS  135 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~~~~  135 (325)
                      .++|+|++|+|||||++.+++...+.
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~~~~~   29 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKTKKSD   29 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC----
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence            58999999999999999999975443

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.35  E-value=8.6e-05  Score=65.93  Aligned_cols=45  Identities=20%  Similarity=0.239  Sum_probs=29.3

Q ss_pred             ceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEe
Q 020527           97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP  145 (325)
Q Consensus        97 iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~  145 (325)
                      .++++++.+++|  +.|.||+|+|||||++++++.....  -+.+++.+
T Consensus        36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~   80 (257)
T 1lv7_A           36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSD   80 (257)
T ss_dssp             GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCS
T ss_pred             HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHH
Confidence            455555555555  8899999999999999999876421  35555433

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.35  E-value=5.2e-05  Score=67.61  Aligned_cols=41  Identities=22%  Similarity=0.380  Sum_probs=33.3

Q ss_pred             EeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeC
Q 020527          104 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL  146 (325)
Q Consensus       104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i  146 (325)
                      ..+++.++.|+|++||||||+.+.|+..+.  .+.+.+++..+
T Consensus        28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~   68 (253)
T 2p5t_B           28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF   68 (253)
T ss_dssp             CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence            456788999999999999999999998764  35677777554

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.32  E-value=2.9e-05  Score=72.79  Aligned_cols=37  Identities=38%  Similarity=0.445  Sum_probs=33.3

Q ss_pred             CceeeeeEEeeCCcE--EEEEcCCCChHHHHHHHHHcCC
Q 020527           96 PILNHVCLTIEANEV--VAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus        96 ~iL~~isl~i~~Ge~--~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .+++.+++.+++|++  ++|+|++||||||+.++|++.+
T Consensus        10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l   48 (359)
T 2ga8_A           10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII   48 (359)
T ss_dssp             HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence            377888888999998  9999999999999999999864

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=97.30  E-value=0.00014  Score=68.55  Aligned_cols=32  Identities=31%  Similarity=0.493  Sum_probs=28.2

Q ss_pred             ceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHH
Q 020527           97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL  129 (325)
Q Consensus        97 iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~  129 (325)
                      .+++..+++.+| +.+|+|||||||||++.+|.
T Consensus        15 ~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A           15 SHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             TEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred             cccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence            457888888875 89999999999999999886

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=97.27  E-value=0.00023  Score=61.13  Aligned_cols=45  Identities=13%  Similarity=0.124  Sum_probs=32.5

Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHH
Q 020527          234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI  283 (325)
Q Consensus       234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~  283 (325)
                      .+|.++++||.-. +|+.....+.+.+.+.    ..+..+|++|++...+
T Consensus       125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~----~~~~~~i~~t~~~~~~  169 (250)
T 1njg_A          125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP----PEHVKFLLATTDPQKL  169 (250)
T ss_dssp             SSSEEEEEETGGG-SCHHHHHHHHHHHHSC----CTTEEEEEEESCGGGS
T ss_pred             CCceEEEEECccc-ccHHHHHHHHHHHhcC----CCceEEEEEeCChHhC
Confidence            4688999999765 7887777776666543    2467888889876643

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.25  E-value=0.00012  Score=61.33  Aligned_cols=26  Identities=27%  Similarity=0.427  Sum_probs=22.7

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcC
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .+|.+++|+|++||||||+.+.|+..
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~~   27 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQE   27 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            35789999999999999999999853

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.19  E-value=6.3e-05  Score=66.58  Aligned_cols=32  Identities=31%  Similarity=0.342  Sum_probs=25.8

Q ss_pred             CcEEEEEcCCCChHHHHHHHHH---cCCCCCCCeE
Q 020527          108 NEVVAIVGLSGSGKSTFVNLLL---RLYEPSDGQI  139 (325)
Q Consensus       108 Ge~~~iiG~nGsGKSTLl~~l~---gl~~~~~G~I  139 (325)
                      .-+++|.||+||||||+.+.|+   |+...+.|.+
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~   43 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAM   43 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcH
Confidence            4589999999999999999998   5544555555

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.19  E-value=0.00019  Score=63.07  Aligned_cols=35  Identities=26%  Similarity=0.321  Sum_probs=27.2

Q ss_pred             eeCCcEEEEEcCCCChHHHHHHHHHc---CCCCCCCeE
Q 020527          105 IEANEVVAIVGLSGSGKSTFVNLLLR---LYEPSDGQI  139 (325)
Q Consensus       105 i~~Ge~~~iiG~nGsGKSTLl~~l~g---l~~~~~G~I  139 (325)
                      =.+|.+++|+|++||||||+.+.|++   +..++.|.+
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~   50 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAM   50 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCe
Confidence            36789999999999999999999986   333444444

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.15  E-value=0.00025  Score=59.01  Aligned_cols=26  Identities=27%  Similarity=0.372  Sum_probs=23.3

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHcCCC
Q 020527          108 NEVVAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       108 Ge~~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      |.++.|+|++||||||+.+.|+..+.
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~   28 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            57899999999999999999998654

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.14  E-value=0.00023  Score=58.59  Aligned_cols=23  Identities=22%  Similarity=0.150  Sum_probs=20.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      +++|+|++||||||+.+.|+..+
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l   25 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKEL   25 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999998654

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=97.04  E-value=0.0027  Score=59.73  Aligned_cols=27  Identities=22%  Similarity=0.367  Sum_probs=23.8

Q ss_pred             EeeCCcEEEEEcCCCChHHHHHHHHHc
Q 020527          104 TIEANEVVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      -+++|+++.|.||+|+|||||...++.
T Consensus        70 Gl~~G~li~I~G~pGsGKTtlal~la~   96 (366)
T 1xp8_A           70 GIPRGRITEIYGPESGGKTTLALAIVA   96 (366)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence            378999999999999999999976654

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=97.02  E-value=0.00031  Score=65.37  Aligned_cols=28  Identities=36%  Similarity=0.589  Sum_probs=24.1

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcCCC
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      ..+..+.|.||+|+|||||++.++....
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~   69 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRLE   69 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence            4567899999999999999999987653

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.01  E-value=0.00037  Score=58.35  Aligned_cols=25  Identities=32%  Similarity=0.525  Sum_probs=22.4

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          108 NEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       108 Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      |.++.|.|++||||||+.+.|+..+
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l   27 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNL   27 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            6789999999999999999998744

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=97.00  E-value=0.00065  Score=56.95  Aligned_cols=35  Identities=43%  Similarity=0.587  Sum_probs=25.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHc-C----CCCCCC----eEEECCE
Q 020527          110 VVAIVGLSGSGKSTFVNLLLR-L----YEPSDG----QIYIDGF  144 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~g-l----~~~~~G----~I~i~g~  144 (325)
                      .++|+|++|+|||||++.+.+ -    +.|+.|    .+.++|.
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~   65 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQ   65 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTE
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCE
Confidence            589999999999999976554 3    456655    4555554

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=97.00  E-value=0.00027  Score=66.91  Aligned_cols=59  Identities=19%  Similarity=0.390  Sum_probs=45.9

Q ss_pred             CCCCEEEEeCCCCCCC---HHHHHHHHHHHHHhhccCCCCeEEEEEecCchHH-------------HhcCEEEEEeCC
Q 020527          234 RDPAILLLDEATSALD---SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-------------KAVDRIVVIDDG  295 (325)
Q Consensus       234 ~~p~llllDEPts~LD---~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~-------------~~~d~v~~l~~G  295 (325)
                      ..|.++++||.=.-++   +.....+.+.+++.++   .|..++++||+++.+             ..|+..+++...
T Consensus       261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk---~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~~  335 (392)
T 4ag6_A          261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRK---YNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQG  335 (392)
T ss_dssp             CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGG---GTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSCC
T ss_pred             CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhh---hCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCCC
Confidence            3588999999988884   6677788888888865   488999999998754             236777777654

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.00  E-value=0.00034  Score=59.28  Aligned_cols=32  Identities=38%  Similarity=0.385  Sum_probs=26.5

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCE
Q 020527          108 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF  144 (325)
Q Consensus       108 Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~  144 (325)
                      ..+++|+|++||||||+.+.|+..     |-..++..
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d   39 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDLD   39 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEccc
Confidence            357999999999999999999985     66666543

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.97  E-value=0.00036  Score=58.61  Aligned_cols=27  Identities=19%  Similarity=0.350  Sum_probs=23.4

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      +++.++.|.|++||||||+.+.|+..+
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATGL   29 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence            457789999999999999999998643

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.97  E-value=0.0001  Score=63.22  Aligned_cols=26  Identities=35%  Similarity=0.627  Sum_probs=23.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCCCCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLYEPS  135 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~~~~  135 (325)
                      +++|.|++||||||+++.|+..+.+.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~~   27 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRAA   27 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence            68999999999999999999877643

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.97  E-value=0.0004  Score=59.91  Aligned_cols=24  Identities=42%  Similarity=0.488  Sum_probs=21.9

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHc
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      .+-+++|.|++||||||+.+.|+.
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999999998

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=96.96  E-value=0.00065  Score=63.92  Aligned_cols=36  Identities=36%  Similarity=0.508  Sum_probs=30.5

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHc-----------CCCCCCCeEEECC
Q 020527          108 NEVVAIVGLSGSGKSTFVNLLLR-----------LYEPSDGQIYIDG  143 (325)
Q Consensus       108 Ge~~~iiG~nGsGKSTLl~~l~g-----------l~~~~~G~I~i~g  143 (325)
                      |-.++|+|.+|+|||||++.|++           -..|..|.+.+++
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~   48 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD   48 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence            45789999999999999999998           3457788888766

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.95  E-value=0.0004  Score=56.89  Aligned_cols=19  Identities=58%  Similarity=0.976  Sum_probs=18.2

Q ss_pred             EEEEEcCCCChHHHHHHHH
Q 020527          110 VVAIVGLSGSGKSTFVNLL  128 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l  128 (325)
                      +++|.|++||||||+.+.|
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6899999999999999999

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=96.91  E-value=0.00046  Score=57.61  Aligned_cols=22  Identities=27%  Similarity=0.511  Sum_probs=20.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++++|++|+|||||++.+.+-
T Consensus        18 ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           18 RILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999875

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.90  E-value=0.00052  Score=57.44  Aligned_cols=26  Identities=27%  Similarity=0.445  Sum_probs=22.2

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .+..+.|+|++||||||+.+.|+..+
T Consensus         4 ~~~~i~l~G~~GsGKst~a~~La~~l   29 (185)
T 3trf_A            4 NLTNIYLIGLMGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            36789999999999999999998644

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=96.90  E-value=0.0037  Score=60.37  Aligned_cols=34  Identities=18%  Similarity=0.228  Sum_probs=27.8

Q ss_pred             ceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHc
Q 020527           97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus        97 iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      -|+.+.--+.+|+.+.|.|++|+|||||+.-++.
T Consensus       186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~  219 (444)
T 3bgw_A          186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK  219 (444)
T ss_dssp             HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred             HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence            4555543589999999999999999999876664

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.90  E-value=0.00044  Score=58.95  Aligned_cols=21  Identities=43%  Similarity=0.642  Sum_probs=18.6

Q ss_pred             EEEEcCCCChHHHHHHHHHcC
Q 020527          111 VAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       111 ~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      +.|+||||||||||++.|..-
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            679999999999999988643

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=96.90  E-value=0.0046  Score=57.72  Aligned_cols=27  Identities=15%  Similarity=0.236  Sum_probs=23.2

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .+...+.|.||+|+|||||++.++...
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~~~  141 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIASQS  141 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence            346679999999999999999998754

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.89  E-value=0.00051  Score=62.48  Aligned_cols=36  Identities=25%  Similarity=0.391  Sum_probs=28.6

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECC
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG  143 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g  143 (325)
                      ..+..+.|.|||||||||+.+.|+.-++  .|.+.+++
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~   66 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN   66 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence            3467899999999999999999986443  35677765

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.89  E-value=0.0003  Score=58.80  Aligned_cols=26  Identities=23%  Similarity=0.234  Sum_probs=22.9

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcC
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      ..+.++.|+|++||||||+.+.|+..
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~~   34 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELASK   34 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence            45778999999999999999999843

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.88  E-value=0.00045  Score=61.56  Aligned_cols=23  Identities=22%  Similarity=0.212  Sum_probs=20.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      +++|+||||||||||.+.|++-+
T Consensus         3 li~I~G~~GSGKSTla~~La~~~   25 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQET   25 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHhcC
Confidence            68999999999999999998754

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.88  E-value=0.00049  Score=58.24  Aligned_cols=23  Identities=35%  Similarity=0.473  Sum_probs=20.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      +++|.|++||||||+.+.|+..+
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l   24 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKL   24 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHhc
Confidence            68999999999999999999844

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=96.83  E-value=0.00046  Score=66.86  Aligned_cols=56  Identities=14%  Similarity=0.189  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHcCCCCEEEEeCCCC-CCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHH
Q 020527          221 GQKQRIAIARAILRDPAILLLDEATS-ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI  283 (325)
Q Consensus       221 Gq~QRv~iAral~~~p~llllDEPts-~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~  283 (325)
                      .|.+....+...+.+++++|+..... ++.... ..+.+.+++      .++.+|++.+..+..
T Consensus        88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~~------~~~pvilV~NK~D~~  144 (456)
T 4dcu_A           88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILYR------TKKPVVLAVNKLDNT  144 (456)
T ss_dssp             CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHTT------CCSCEEEEEECC---
T ss_pred             HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHHH------cCCCEEEEEECccch
Confidence            46677777888888888777765544 455443 344444432      366788888766654

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.83  E-value=0.00072  Score=57.33  Aligned_cols=26  Identities=23%  Similarity=0.326  Sum_probs=24.1

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      +|-+++|.|+.||||||+.+.|+..+
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999999876

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=96.83  E-value=0.0054  Score=67.93  Aligned_cols=35  Identities=20%  Similarity=0.284  Sum_probs=29.0

Q ss_pred             eeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeE
Q 020527          105 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI  139 (325)
Q Consensus       105 i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I  139 (325)
                      +++|+.+.|.||+|+|||||+..++.......|.+
T Consensus       729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~V  763 (1706)
T 3cmw_A          729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTC  763 (1706)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCe
Confidence            89999999999999999999998887654443443

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.83  E-value=0.00049  Score=57.26  Aligned_cols=23  Identities=35%  Similarity=0.556  Sum_probs=20.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++|+|++||||||+.+.|+..+
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            58899999999999999998654

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.78  E-value=0.00069  Score=56.08  Aligned_cols=22  Identities=32%  Similarity=0.650  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCChHHHHHHHHHc
Q 020527          109 EVVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       109 e~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      .++.|.|++||||||+.+.|+.
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999987

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.76  E-value=0.00074  Score=56.81  Aligned_cols=27  Identities=30%  Similarity=0.553  Sum_probs=23.6

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++.+++|+|++||||||+.+.|+..+
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            467899999999999999999998643

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.75  E-value=0.0008  Score=57.41  Aligned_cols=27  Identities=33%  Similarity=0.482  Sum_probs=23.8

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .+|.+++|.|+.||||||+.+.|+..+
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~~l   34 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVEYL   34 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            468899999999999999999998643

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.74  E-value=0.00079  Score=57.27  Aligned_cols=28  Identities=36%  Similarity=0.480  Sum_probs=24.2

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHcCCCC
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLLRLYEP  134 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~~~  134 (325)
                      +|.+++|.|+.||||||+.+.|+..+..
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~   30 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIEL   30 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence            4678999999999999999999876543

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=96.72  E-value=0.0012  Score=60.88  Aligned_cols=34  Identities=32%  Similarity=0.307  Sum_probs=30.3

Q ss_pred             CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHc
Q 020527           96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus        96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      ..+++..+.+ .|.-++|.|+||+|||||...+.+
T Consensus       133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~  166 (314)
T 1ko7_A          133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK  166 (314)
T ss_dssp             EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence            4778888888 688999999999999999998887

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.71  E-value=0.00059  Score=57.29  Aligned_cols=26  Identities=27%  Similarity=0.335  Sum_probs=22.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHHcCCCC
Q 020527          109 EVVAIVGLSGSGKSTFVNLLLRLYEP  134 (325)
Q Consensus       109 e~~~iiG~nGsGKSTLl~~l~gl~~~  134 (325)
                      .+++|+|++|||||||+..|++.++.
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~~   30 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAVR   30 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence            37899999999999999999987653

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.70  E-value=0.00091  Score=57.12  Aligned_cols=28  Identities=21%  Similarity=0.340  Sum_probs=24.0

Q ss_pred             eeCCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          105 IEANEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       105 i~~Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++|-+++|.|+.||||||+.+.|+..+
T Consensus         6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l   33 (215)
T 1nn5_A            6 ARRGALIVLEGVDRAGKSTQSRKLVEAL   33 (215)
T ss_dssp             -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            3568899999999999999999998643

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=96.69  E-value=0.0008  Score=60.31  Aligned_cols=45  Identities=18%  Similarity=0.183  Sum_probs=31.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEE
Q 020527          244 ATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIV  290 (325)
Q Consensus       244 Pts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~  290 (325)
                      |||+.+......+++.+.+..+.  ...+..+..|..+.++. ++++.
T Consensus       144 ~~Sa~~g~gi~~l~~~i~~~~~~--~~~~~~~~~~~~~~~e~~~~~l~  189 (271)
T 3k53_A          144 PTNAKKGEGVEELKRMIALMAEG--KVTTNPIIPRYDEDIEREIKHIS  189 (271)
T ss_dssp             ECBGGGTBTHHHHHHHHHHHHHT--CCCCCCCCCCCCHHHHHHHHHHH
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhc--cccCCCCCcCCCHHHHHHHHHHH
Confidence            99999999988888888777543  23444566777776654 55543

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.68  E-value=0.00066  Score=61.56  Aligned_cols=32  Identities=16%  Similarity=0.244  Sum_probs=27.3

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHcCCCCCCCeE
Q 020527          108 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI  139 (325)
Q Consensus       108 Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I  139 (325)
                      ...+.|.||+|+||||++++|++...+..|.+
T Consensus        47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~   78 (311)
T 4fcw_A           47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAM   78 (311)
T ss_dssp             SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence            35799999999999999999999887666643

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.66  E-value=0.00097  Score=55.83  Aligned_cols=24  Identities=29%  Similarity=0.369  Sum_probs=21.3

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHcC
Q 020527          108 NEVVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       108 Ge~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      +.+++|.|++||||||+.+.|+..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~   26 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEK   26 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            568999999999999999998753

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.64  E-value=0.00095  Score=55.78  Aligned_cols=24  Identities=25%  Similarity=0.516  Sum_probs=21.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      ++.|.|++||||||+.+.|+.-+.
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999987554

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=96.62  E-value=0.0062  Score=56.85  Aligned_cols=27  Identities=19%  Similarity=0.279  Sum_probs=22.6

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .+..-+.|.||.|+|||||.+.++...
T Consensus        82 ~~~~~iLL~GppGtGKT~la~ala~~~  108 (355)
T 2qp9_X           82 KPTSGILLYGPPGTGKSYLAKAVATEA  108 (355)
T ss_dssp             CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence            344558899999999999999999754

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.60  E-value=0.001  Score=56.45  Aligned_cols=23  Identities=35%  Similarity=0.407  Sum_probs=21.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      +++|.|++||||||+.+.|+..+
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~l   26 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAAL   26 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            79999999999999999998754

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.55  E-value=0.00098  Score=56.17  Aligned_cols=28  Identities=32%  Similarity=0.541  Sum_probs=24.3

Q ss_pred             eeCCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          105 IEANEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       105 i~~Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      ++.+.+++|.|+.||||||+.+.|+..+
T Consensus         9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A            9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            4567799999999999999999998644

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.54  E-value=0.00092  Score=55.62  Aligned_cols=26  Identities=23%  Similarity=0.263  Sum_probs=18.3

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      ++.++.|.|++||||||+.+.|+..+
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l   29 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERL   29 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            46789999999999999999998543

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.53  E-value=0.0013  Score=55.01  Aligned_cols=24  Identities=29%  Similarity=0.414  Sum_probs=21.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHHcCC
Q 020527          109 EVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       109 e~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      =.++++|++|||||||++.+.+-.
T Consensus        49 ~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           49 PSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            378999999999999999999864

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.50  E-value=0.0015  Score=56.33  Aligned_cols=26  Identities=23%  Similarity=0.363  Sum_probs=23.0

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      +|-++.|+|+.||||||+.+.|+..+
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            56789999999999999999998644

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.47  E-value=0.0015  Score=52.91  Aligned_cols=22  Identities=23%  Similarity=0.357  Sum_probs=20.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++++|+.|+|||||++.+.+-
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4889999999999999999874

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.45  E-value=0.0015  Score=56.07  Aligned_cols=22  Identities=27%  Similarity=0.569  Sum_probs=19.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      +++|+|++||||||+.+.|+.-
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEK   23 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999653

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.45  E-value=0.0016  Score=56.55  Aligned_cols=27  Identities=26%  Similarity=0.335  Sum_probs=22.3

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++.+++|.|+.||||||+.+.|+.-+
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            456789999999999999999998543

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.44  E-value=0.0014  Score=53.17  Aligned_cols=23  Identities=26%  Similarity=0.436  Sum_probs=20.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++++|++|+|||||++.+.|..
T Consensus         4 ki~~vG~~~~GKSsli~~l~~~~   26 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGGVE   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCC-
T ss_pred             EEEEECCCCCCHHHHHHHHcCcc
Confidence            47899999999999999998754

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.43  E-value=0.0016  Score=55.33  Aligned_cols=26  Identities=15%  Similarity=0.204  Sum_probs=22.9

Q ss_pred             cEEEEEcCCCChHHHHHHHHHcCCCC
Q 020527          109 EVVAIVGLSGSGKSTFVNLLLRLYEP  134 (325)
Q Consensus       109 e~~~iiG~nGsGKSTLl~~l~gl~~~  134 (325)
                      ..+.|.||+|+|||||++.++.....
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~   80 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAK   80 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            68999999999999999999986543

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.43  E-value=0.0016  Score=52.37  Aligned_cols=22  Identities=32%  Similarity=0.510  Sum_probs=20.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++++|+.|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999999875

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.42  E-value=0.0017  Score=52.25  Aligned_cols=23  Identities=43%  Similarity=0.543  Sum_probs=20.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++++|+.|+|||||++.+.+-.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998754

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.42  E-value=0.0017  Score=52.96  Aligned_cols=23  Identities=26%  Similarity=0.443  Sum_probs=20.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++|+|++|+|||||++.+.+-.
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~~~   28 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAGKQ   28 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCccHHHHHHHHhcCC
Confidence            48999999999999999998754

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.41  E-value=0.0018  Score=52.56  Aligned_cols=22  Identities=36%  Similarity=0.519  Sum_probs=20.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++++|+.|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999873

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.41  E-value=0.0017  Score=52.25  Aligned_cols=22  Identities=27%  Similarity=0.413  Sum_probs=19.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++++|+.|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999998854

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=96.40  E-value=0.0013  Score=55.73  Aligned_cols=22  Identities=45%  Similarity=0.533  Sum_probs=20.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++|+|++|+|||||++.+.|.
T Consensus        25 ki~vvG~~~vGKSsLi~~l~~~   46 (195)
T 3cbq_A           25 KVMLVGESGVGKSTLAGTFGGL   46 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHTCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            5899999999999999999764

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.40  E-value=0.0018  Score=53.23  Aligned_cols=23  Identities=30%  Similarity=0.482  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCChHHHHHHHHHcC
Q 020527          109 EVVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       109 e~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      ++++|.|+.||||||+.+.|+..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~   30 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLA   30 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999999764

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.39  E-value=0.002  Score=54.66  Aligned_cols=26  Identities=27%  Similarity=0.316  Sum_probs=22.5

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .+-+++|+|+.||||||+.+.|+..+
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~~l   44 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAEKL   44 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            35689999999999999999998643

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.38  E-value=0.0015  Score=53.78  Aligned_cols=24  Identities=33%  Similarity=0.421  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHcCC
Q 020527          109 EVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       109 e~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .+++|.|++||||||+.+.|+..+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l   26 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARAL   26 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh
Confidence            368999999999999999998643

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.37  E-value=0.0019  Score=52.49  Aligned_cols=23  Identities=43%  Similarity=0.485  Sum_probs=20.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++++|++|+|||||++.+.+..
T Consensus         4 ki~ivG~~~~GKSsli~~l~~~~   26 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGGLQ   26 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHHHhcc
Confidence            47899999999999999998754

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.37  E-value=0.0018  Score=52.16  Aligned_cols=22  Identities=32%  Similarity=0.400  Sum_probs=19.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++++|+.|+|||||++.+.+-
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999999864

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=96.37  E-value=0.0017  Score=58.47  Aligned_cols=23  Identities=30%  Similarity=0.523  Sum_probs=21.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++|+|++|+|||||++.++|..
T Consensus         5 kI~lvG~~nvGKSTL~n~L~g~~   27 (272)
T 3b1v_A            5 EIALIGNPNSGKTSLFNLITGHN   27 (272)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999964

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.37  E-value=0.0018  Score=54.17  Aligned_cols=23  Identities=35%  Similarity=0.573  Sum_probs=20.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      +++|.|+.||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58999999999999999998754

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.37  E-value=0.0018  Score=55.61  Aligned_cols=23  Identities=30%  Similarity=0.566  Sum_probs=20.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++|+|++||||||+.+.|+.-+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999997543

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.36  E-value=0.0019  Score=52.93  Aligned_cols=23  Identities=39%  Similarity=0.478  Sum_probs=20.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      +++|.|++||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l   24 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSL   24 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999998643

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.36  E-value=0.0019  Score=52.33  Aligned_cols=23  Identities=26%  Similarity=0.365  Sum_probs=20.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++++|+.|+|||||++.+.+-.
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            48999999999999999998754

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.36  E-value=0.0019  Score=52.43  Aligned_cols=22  Identities=23%  Similarity=0.252  Sum_probs=20.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++++|++|+|||||++.+.+-
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999999865

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.35  E-value=0.0019  Score=52.40  Aligned_cols=23  Identities=26%  Similarity=0.371  Sum_probs=20.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++++|+.|+|||||++.+.+-.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVEDK   27 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            47999999999999999998743

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=96.34  E-value=0.002  Score=52.87  Aligned_cols=23  Identities=30%  Similarity=0.414  Sum_probs=20.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++++|+.|+|||||++.+.+-.
T Consensus        10 ~i~v~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A           10 KVIILGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            58999999999999999988743

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.33  E-value=0.0017  Score=56.16  Aligned_cols=26  Identities=35%  Similarity=0.382  Sum_probs=22.3

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .+.++.|+|++||||||+.+.|+.-+
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l   29 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKY   29 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            35678999999999999999998644

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.33  E-value=0.002  Score=52.14  Aligned_cols=23  Identities=22%  Similarity=0.287  Sum_probs=20.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++++|+.|+|||||++.+.+-.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            48899999999999999998643

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.33  E-value=0.0024  Score=52.26  Aligned_cols=25  Identities=28%  Similarity=0.432  Sum_probs=21.9

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHcC
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      +.-.++++|++|+|||||++.+.+-
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4457999999999999999999874

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=96.32  E-value=0.002  Score=52.00  Aligned_cols=22  Identities=23%  Similarity=0.415  Sum_probs=19.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++++|+.|+|||||++.+.+-
T Consensus         5 ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999864

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.31  E-value=0.0019  Score=54.01  Aligned_cols=23  Identities=39%  Similarity=0.612  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHcC
Q 020527          109 EVVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       109 e~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      -.++|+|+.|+|||||++.+.+-
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           24 PEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            36899999999999999999874

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.31  E-value=0.002  Score=53.76  Aligned_cols=25  Identities=36%  Similarity=0.507  Sum_probs=21.6

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          108 NEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       108 Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      ..+++|.|+.||||||+.+.|+..+
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~l   30 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            3589999999999999999997643

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.31  E-value=0.0017  Score=54.23  Aligned_cols=24  Identities=42%  Similarity=0.537  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHcCC
Q 020527          109 EVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       109 e~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .+++|+|++||||||+.+.|+..+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l   26 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKAL   26 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHc
Confidence            468999999999999999997643

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=96.31  E-value=0.0021  Score=52.62  Aligned_cols=22  Identities=32%  Similarity=0.477  Sum_probs=19.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++++|+.|+|||||++.+.+-
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4899999999999999999864

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=96.30  E-value=0.002  Score=52.73  Aligned_cols=22  Identities=27%  Similarity=0.445  Sum_probs=20.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++++|+.|+|||||++.+.+-
T Consensus        11 ~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           11 KLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999875

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.30  E-value=0.0019  Score=53.66  Aligned_cols=23  Identities=43%  Similarity=0.525  Sum_probs=21.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        25 ~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           25 EVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCc
Confidence            68999999999999999998754

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.29  E-value=0.0021  Score=54.60  Aligned_cols=25  Identities=32%  Similarity=0.515  Sum_probs=21.6

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          108 NEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       108 Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      ..+++|.|+.||||||+.+.|+..+
T Consensus        15 ~~~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc
Confidence            4579999999999999999998543

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=96.29  E-value=0.0019  Score=52.93  Aligned_cols=22  Identities=32%  Similarity=0.395  Sum_probs=20.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++++|++|+|||||++.+.+-
T Consensus        11 ~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHCSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4889999999999999999864

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.25  E-value=0.0023  Score=54.62  Aligned_cols=23  Identities=35%  Similarity=0.541  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCChHHHHHHHHHcC
Q 020527          109 EVVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       109 e~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      -+++|+|+.||||||+.+.|+..
T Consensus        13 ~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           13 MVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            47999999999999999999874

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.24  E-value=0.0023  Score=56.67  Aligned_cols=24  Identities=25%  Similarity=0.436  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHcCC
Q 020527          109 EVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       109 e~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      -+++|.|++||||||+.+.|+..+
T Consensus        23 ~iI~I~G~~GSGKST~a~~L~~~l   46 (252)
T 1uj2_A           23 FLIGVSGGTASGKSSVCAKIVQLL   46 (252)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHh
Confidence            379999999999999999998743

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=96.23  E-value=0.0022  Score=53.18  Aligned_cols=23  Identities=30%  Similarity=0.333  Sum_probs=20.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++++|++|+|||||++.+.+-.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGKK   25 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCcC
Confidence            47899999999999999998753

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.23  E-value=0.0037  Score=53.83  Aligned_cols=35  Identities=31%  Similarity=0.244  Sum_probs=28.8

Q ss_pred             CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcC
Q 020527           96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus        96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      ..++...+.+ .|..++|+||+|||||||...|+.-
T Consensus        23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred             eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            3677777666 4788999999999999999988754

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.22  E-value=0.0025  Score=51.57  Aligned_cols=22  Identities=27%  Similarity=0.397  Sum_probs=19.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++++|+.|+|||||++.+.+-
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999863

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=96.22  E-value=0.0026  Score=52.93  Aligned_cols=24  Identities=21%  Similarity=0.192  Sum_probs=21.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      .++|+|+.|+|||||++.+.|-..
T Consensus        16 ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcc
Confidence            478999999999999999998654

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.22  E-value=0.0025  Score=56.80  Aligned_cols=25  Identities=36%  Similarity=0.601  Sum_probs=22.3

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHcC
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      ++.++.|.|++||||||+.+.|+..
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~   27 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKI   27 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            4668999999999999999999864

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=96.22  E-value=0.0025  Score=53.13  Aligned_cols=23  Identities=30%  Similarity=0.300  Sum_probs=20.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         9 ki~v~G~~~~GKSsli~~l~~~~   31 (208)
T 3clv_A            9 KTVLLGESSVGKSSIVLRLTKDT   31 (208)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            58999999999999999999853

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=96.21  E-value=0.0025  Score=52.64  Aligned_cols=23  Identities=30%  Similarity=0.457  Sum_probs=20.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++++|+.|+|||||++.+.+-.
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            48899999999999999998643

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.19  E-value=0.0026  Score=51.65  Aligned_cols=22  Identities=36%  Similarity=0.545  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCChHHHHHHHHHc
Q 020527          109 EVVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       109 e~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      =.++++|++|+|||||++.+.+
T Consensus         8 ~~i~v~G~~~~GKssl~~~l~~   29 (171)
T 1upt_A            8 MRILILGLDGAGKTTILYRLQV   29 (171)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            3689999999999999999976

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=96.19  E-value=0.0026  Score=52.71  Aligned_cols=22  Identities=23%  Similarity=0.218  Sum_probs=20.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        13 ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999864

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=96.19  E-value=0.0026  Score=53.19  Aligned_cols=22  Identities=32%  Similarity=0.546  Sum_probs=20.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++|+|++|+|||||++.+.+-
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4899999999999999999874

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=96.18  E-value=0.0029  Score=51.81  Aligned_cols=22  Identities=18%  Similarity=0.386  Sum_probs=19.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++++|+.|+|||||++.+.+-
T Consensus         8 ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHGG
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            4899999999999999999864

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.17  E-value=0.0016  Score=53.75  Aligned_cols=23  Identities=35%  Similarity=0.517  Sum_probs=20.1

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHc
Q 020527          108 NEVVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       108 Ge~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      .=.++++|++|+|||||++.+.+
T Consensus        18 ~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           18 ELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTCC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhc
Confidence            34699999999999999999874

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=96.16  E-value=0.0028  Score=51.19  Aligned_cols=21  Identities=33%  Similarity=0.498  Sum_probs=19.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHc
Q 020527          110 VVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      .++++|++|+|||||++.+.+
T Consensus         2 ki~~~G~~~~GKssl~~~l~~   22 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKL   22 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            478999999999999999975

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.15  E-value=0.0027  Score=51.88  Aligned_cols=22  Identities=14%  Similarity=0.329  Sum_probs=19.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        16 ~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999864

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=96.14  E-value=0.0027  Score=58.09  Aligned_cols=25  Identities=48%  Similarity=0.591  Sum_probs=22.0

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcC
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      +.| +++|+|++|+|||||++.+.|-
T Consensus         6 ~~g-~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            6 YSG-FVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             EEE-EEEEECSTTSSHHHHHHHHHTS
T ss_pred             cCC-EEEEECCCCCCHHHHHHHHhCC
Confidence            344 6999999999999999999985

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.14  E-value=0.0028  Score=55.87  Aligned_cols=25  Identities=28%  Similarity=0.279  Sum_probs=21.9

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHcC
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      ++-+++|.||+||||||+.+.|+--
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~~   52 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKKS   52 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4568999999999999999999753

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.13  E-value=0.0013  Score=59.83  Aligned_cols=26  Identities=23%  Similarity=0.542  Sum_probs=19.5

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      ++-+++|.|++||||||+.+.|...+
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~l   29 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIF   29 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHH
Confidence            34589999999999999999998744

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=96.12  E-value=0.0024  Score=57.26  Aligned_cols=23  Identities=43%  Similarity=0.567  Sum_probs=20.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++|+|++|+|||||++.|.+--
T Consensus        10 ~I~vvG~~g~GKSTLin~L~~~~   32 (274)
T 3t5d_A           10 TLMVVGESGLGKSTLINSLFLTD   32 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHSSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48999999999999999987643

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.11  E-value=0.003  Score=51.85  Aligned_cols=23  Identities=30%  Similarity=0.303  Sum_probs=20.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++++|+.|+|||||++.+.+-.
T Consensus        12 ~i~v~G~~~~GKssli~~l~~~~   34 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLLVRFKDGA   34 (180)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            58999999999999999998643

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=96.11  E-value=0.003  Score=52.03  Aligned_cols=22  Identities=32%  Similarity=0.400  Sum_probs=20.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++++|+.|+|||||++.+.+-
T Consensus        20 ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           20 KVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            5899999999999999999864

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=96.10  E-value=0.003  Score=51.57  Aligned_cols=23  Identities=26%  Similarity=0.322  Sum_probs=20.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++++|+.|+|||||++.+.+-.
T Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           17 KYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            48999999999999999998743

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=96.10  E-value=0.003  Score=52.53  Aligned_cols=22  Identities=32%  Similarity=0.510  Sum_probs=20.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++++|+.|+|||||++.+.+-
T Consensus        23 ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999999864

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.08  E-value=0.0029  Score=57.17  Aligned_cols=23  Identities=39%  Similarity=0.546  Sum_probs=20.8

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHc
Q 020527          108 NEVVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       108 Ge~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      .-+++|.|++||||||+.+.|+.
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34799999999999999999984

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=96.08  E-value=0.0017  Score=62.98  Aligned_cols=45  Identities=16%  Similarity=0.327  Sum_probs=34.8

Q ss_pred             CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEE
Q 020527           96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI  141 (325)
Q Consensus        96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i  141 (325)
                      .+++.+ +.+-+|+..+|+|++|+|||||++.|++-.....+.+.+
T Consensus       140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V  184 (473)
T 1sky_E          140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISV  184 (473)
T ss_dssp             HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEE
T ss_pred             hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEE
Confidence            356666 567889999999999999999999998765544444443

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.06  E-value=0.0095  Score=58.05  Aligned_cols=70  Identities=17%  Similarity=0.199  Sum_probs=52.5

Q ss_pred             CCCChHHHHHHHHHHH--HcC---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEec
Q 020527          216 DLLSGGQKQRIAIARA--ILR---------------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH  278 (325)
Q Consensus       216 ~~LSgGq~QRv~iAra--l~~---------------~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH  278 (325)
                      ..+||||+|-.-+|.+  +++               .=.++++||+ +-+|.+..+..+++++++      |.-+|++|=
T Consensus       378 g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l------glQliiatP  450 (483)
T 3euj_A          378 SALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL------DMQLLIAAP  450 (483)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT------TCEEEEEES
T ss_pred             CCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc------CCEEEEECc
Confidence            4599999996444333  222               2258999999 999999999999999987      667889998


Q ss_pred             CchHHHhcCEEEEEe
Q 020527          279 RLSTIKAVDRIVVID  293 (325)
Q Consensus       279 ~~~~~~~~d~v~~l~  293 (325)
                      + .....+|.++.+-
T Consensus       451 ~-~i~p~v~~~~~~~  464 (483)
T 3euj_A          451 E-NISPERGTTYKLV  464 (483)
T ss_dssp             S-SCCCSSSEEEECC
T ss_pred             c-hhhhccCceEEEE
Confidence            7 3334578887764

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=96.06  E-value=0.0033  Score=51.64  Aligned_cols=23  Identities=26%  Similarity=0.416  Sum_probs=20.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++++|+.|+|||||++.+.+-.
T Consensus        14 ki~v~G~~~~GKSsli~~l~~~~   36 (181)
T 2efe_B           14 KLVLLGDVGAGKSSLVLRFVKDQ   36 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            58999999999999999998753

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=96.06  E-value=0.031  Score=52.50  Aligned_cols=25  Identities=16%  Similarity=0.300  Sum_probs=22.4

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHcC
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      ++..+.|.||+|+|||+|++.++..
T Consensus       147 ~~~~vLL~GppGtGKT~la~aia~~  171 (389)
T 3vfd_A          147 PARGLLLFGPPGNGKTMLAKAVAAE  171 (389)
T ss_dssp             CCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHh
Confidence            4568999999999999999999875

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.05  E-value=0.0032  Score=54.61  Aligned_cols=23  Identities=43%  Similarity=0.544  Sum_probs=20.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      +++|.|++||||||+.+.|+-.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999997543

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=96.05  E-value=0.0032  Score=52.03  Aligned_cols=23  Identities=22%  Similarity=0.466  Sum_probs=20.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        12 ki~v~G~~~~GKSsli~~l~~~~   34 (186)
T 2bme_A           12 KFLVIGNAGTGKSCLLHQFIEKK   34 (186)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999998643

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=96.04  E-value=0.081  Score=51.51  Aligned_cols=34  Identities=29%  Similarity=0.234  Sum_probs=27.1

Q ss_pred             ceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHc
Q 020527           97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus        97 iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      -|+.+.--+.+|+++.|.|++|+|||||+.-++-
T Consensus       231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~  264 (503)
T 1q57_A          231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL  264 (503)
T ss_dssp             THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred             hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence            4555433589999999999999999999866653

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.04  E-value=0.0049  Score=51.88  Aligned_cols=34  Identities=26%  Similarity=0.266  Sum_probs=26.7

Q ss_pred             CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHc
Q 020527           96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus        96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      ..++...+.+. |.-+.|.|+||+|||||...+..
T Consensus         5 ~~lHas~v~v~-G~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A            5 QTWHANFLVID-KMGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             EEEESEEEEET-TEEEEEEESSSSSHHHHHHHHHH
T ss_pred             EEEEEEEEEEC-CEEEEEEcCCCCCHHHHHHHHHH
Confidence            35566666554 88899999999999999987764

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=96.04  E-value=0.0032  Score=56.16  Aligned_cols=23  Identities=26%  Similarity=0.381  Sum_probs=21.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++|+|++|||||||++.+.|-.
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~~   25 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNAN   25 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999874

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.03  E-value=0.0039  Score=51.31  Aligned_cols=27  Identities=22%  Similarity=0.318  Sum_probs=23.0

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHcCCC
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      .+..+.|.||.|+|||||++.++..+.
T Consensus        42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~   68 (195)
T 1jbk_A           42 TKNNPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence            356789999999999999999987653

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=96.03  E-value=0.0033  Score=55.63  Aligned_cols=23  Identities=39%  Similarity=0.537  Sum_probs=20.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++|+|++|||||||++.|.|-.
T Consensus        24 ~I~lvG~~g~GKStl~n~l~~~~   46 (260)
T 2xtp_A           24 RIILVGKTGTGKSAAGNSILRKQ   46 (260)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999753

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=96.02  E-value=0.0033  Score=57.58  Aligned_cols=22  Identities=55%  Similarity=0.625  Sum_probs=20.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      +++|+|+.|+|||||++.|.|-
T Consensus        12 ~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A           12 YVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            7999999999999999999985

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.02  E-value=0.0033  Score=53.62  Aligned_cols=23  Identities=30%  Similarity=0.439  Sum_probs=21.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++++|++|+|||||++.+.+-.
T Consensus        14 ~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           14 SIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999999754

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=96.00  E-value=0.0036  Score=52.73  Aligned_cols=23  Identities=35%  Similarity=0.488  Sum_probs=20.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A           10 KVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            58999999999999999998753

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=96.00  E-value=0.0022  Score=54.91  Aligned_cols=24  Identities=38%  Similarity=0.450  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHcCC
Q 020527          109 EVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       109 e~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      -.++|+|+.|+|||||++.+.+-.
T Consensus        30 ~~i~v~G~~~~GKSslin~l~~~~   53 (223)
T 4dhe_A           30 PEIAFAGRSNAGKSTAINVLCNQK   53 (223)
T ss_dssp             CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCCC
Confidence            368999999999999999999854

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=95.99  E-value=0.0035  Score=52.06  Aligned_cols=22  Identities=23%  Similarity=0.457  Sum_probs=20.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++++|++|+|||||++.+.+-
T Consensus         9 ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            9 KIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999875

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=95.99  E-value=0.0031  Score=59.44  Aligned_cols=22  Identities=55%  Similarity=0.715  Sum_probs=20.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++|+|++|+|||||++.|++.
T Consensus         3 ~v~IVG~pnvGKSTL~n~L~~~   24 (368)
T 2dby_A            3 AVGIVGLPNVGKSTLFNALTRA   24 (368)
T ss_dssp             SEEEECCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999999985

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=95.98  E-value=0.0037  Score=52.57  Aligned_cols=22  Identities=32%  Similarity=0.400  Sum_probs=19.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        16 ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           16 KVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999999864

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=95.98  E-value=0.0036  Score=52.41  Aligned_cols=23  Identities=30%  Similarity=0.429  Sum_probs=20.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        25 ki~vvG~~~~GKSsli~~l~~~~   47 (192)
T 2fg5_A           25 KVCLLGDTGVGKSSIVCRFVQDH   47 (192)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            48999999999999999998643

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=95.98  E-value=0.0037  Score=51.53  Aligned_cols=22  Identities=27%  Similarity=0.439  Sum_probs=19.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        20 ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           20 KLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999999854

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=95.98  E-value=0.0037  Score=52.07  Aligned_cols=23  Identities=22%  Similarity=0.275  Sum_probs=20.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFLFRYADDS   46 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            48999999999999999998753

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=95.96  E-value=0.0038  Score=52.04  Aligned_cols=23  Identities=26%  Similarity=0.290  Sum_probs=20.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        18 ki~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            48999999999999999998743

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.96  E-value=0.0037  Score=52.22  Aligned_cols=22  Identities=32%  Similarity=0.484  Sum_probs=20.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        10 ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A           10 RVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            5899999999999999999873

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=95.95  E-value=0.0037  Score=53.67  Aligned_cols=23  Identities=22%  Similarity=0.481  Sum_probs=20.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++|.|+.||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998643

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=95.95  E-value=0.0039  Score=53.77  Aligned_cols=26  Identities=27%  Similarity=0.533  Sum_probs=22.4

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      +|-++.|+|+.||||||+.+.|+.-+
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            35679999999999999999998644

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=95.95  E-value=0.0037  Score=51.75  Aligned_cols=24  Identities=21%  Similarity=0.336  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHcC
Q 020527          108 NEVVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       108 Ge~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .=.++++|+.|+|||||++.+.+-
T Consensus        18 ~~~i~v~G~~~~GKssl~~~l~~~   41 (186)
T 1ksh_A           18 ELRLLMLGLDNAGKTTILKKFNGE   41 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            346899999999999999999864

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=95.93  E-value=0.0041  Score=51.22  Aligned_cols=22  Identities=18%  Similarity=0.193  Sum_probs=19.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++++|++|+|||||++.+.+-
T Consensus         7 ~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999998753

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=95.91  E-value=0.0042  Score=51.71  Aligned_cols=22  Identities=18%  Similarity=0.240  Sum_probs=19.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        22 ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           22 KIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4899999999999999999863

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=95.91  E-value=0.004  Score=52.57  Aligned_cols=23  Identities=22%  Similarity=0.329  Sum_probs=20.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        26 ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           26 KVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            68999999999999999998754

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=95.91  E-value=0.04  Score=62.01  Aligned_cols=29  Identities=24%  Similarity=0.374  Sum_probs=25.2

Q ss_pred             eeCCcEEEEEcCCCChHHHHHHHHHcCCC
Q 020527          105 IEANEVVAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       105 i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      +++|+++.|.||+|+|||||...++.-..
T Consensus       380 l~~G~lilI~G~pGsGKTtLaLqia~~~a  408 (2050)
T 3cmu_A          380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ  408 (2050)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             ccCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            89999999999999999999877765443

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=95.90  E-value=0.0041  Score=52.36  Aligned_cols=22  Identities=36%  Similarity=0.634  Sum_probs=20.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++|+|++|+|||||++.+.|.
T Consensus         8 kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999863

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=95.89  E-value=0.0041  Score=51.16  Aligned_cols=21  Identities=29%  Similarity=0.488  Sum_probs=19.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHc
Q 020527          110 VVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      .++|+|+.|+|||||++.+.+
T Consensus         8 ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            8 KIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            588999999999999999984

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.89  E-value=0.0041  Score=51.93  Aligned_cols=23  Identities=26%  Similarity=0.293  Sum_probs=20.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        25 ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhcCC
Confidence            48899999999999999998643

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=95.88  E-value=0.0045  Score=52.12  Aligned_cols=23  Identities=26%  Similarity=0.312  Sum_probs=20.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFLFRYADDS   32 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            48999999999999999998753

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=95.87  E-value=0.0041  Score=53.22  Aligned_cols=24  Identities=29%  Similarity=0.447  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCChHHHHHHHHHcCC
Q 020527          109 EVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       109 e~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      -.++|+|+.|||||||++.+++-.
T Consensus        31 ~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           31 VAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Confidence            368999999999999999988753

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=95.86  E-value=0.0043  Score=55.77  Aligned_cols=23  Identities=30%  Similarity=0.465  Sum_probs=21.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++|+|++|||||||++.+.|-.
T Consensus         5 ~I~lvG~~n~GKSTLin~l~g~~   27 (274)
T 3i8s_A            5 TIGLIGNPNSGKTTLFNQLTGSR   27 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999864

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=95.86  E-value=0.0045  Score=51.71  Aligned_cols=22  Identities=27%  Similarity=0.338  Sum_probs=20.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4899999999999999999874

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=95.85  E-value=0.0049  Score=55.22  Aligned_cols=30  Identities=40%  Similarity=0.464  Sum_probs=22.9

Q ss_pred             cEEEEEcCCCChHHHHHHHHHcCCCCCCCe
Q 020527          109 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ  138 (325)
Q Consensus       109 e~~~iiG~nGsGKSTLl~~l~gl~~~~~G~  138 (325)
                      -.++++|.+|+|||||++.|.|-..+..|.
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~  129 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA  129 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence            489999999999999999999876544443

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.84  E-value=0.0047  Score=51.35  Aligned_cols=22  Identities=36%  Similarity=0.502  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCChHHHHHHHHHc
Q 020527          109 EVVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       109 e~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      =.++++|+.|+|||||++.+.+
T Consensus        17 ~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           17 HKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            3689999999999999999985

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=95.84  E-value=0.0046  Score=55.10  Aligned_cols=23  Identities=30%  Similarity=0.403  Sum_probs=21.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++|+|++|+|||||++.+.|-.
T Consensus         7 kI~lvG~~nvGKTsL~n~l~g~~   29 (258)
T 3a1s_A            7 KVALAGCPNVGKTSLFNALTGTK   29 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999854

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.83  E-value=0.0044  Score=52.74  Aligned_cols=22  Identities=23%  Similarity=0.452  Sum_probs=19.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++|+|++|+|||||++.+.+-
T Consensus        28 ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           28 KIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5899999999999999988754

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=95.82  E-value=0.0042  Score=52.07  Aligned_cols=22  Identities=27%  Similarity=0.449  Sum_probs=19.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        28 ki~vvG~~~~GKSsLi~~l~~~   49 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERFTDD   49 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4899999999999999999864

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=95.82  E-value=0.0047  Score=52.19  Aligned_cols=22  Identities=23%  Similarity=0.519  Sum_probs=19.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           27 KFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5899999999999999999864

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=95.81  E-value=0.0035  Score=52.27  Aligned_cols=23  Identities=39%  Similarity=0.460  Sum_probs=20.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++++|+.|+|||||++.+.+-.
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           23 HVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             EEEEEECTTSSHHHHHHHTSCGG
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998754

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=95.80  E-value=0.0046  Score=56.19  Aligned_cols=23  Identities=26%  Similarity=0.398  Sum_probs=21.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++|+|+.|||||||++.|+|.-
T Consensus        26 ~I~vvG~~~~GKSTlln~l~g~~   48 (315)
T 1jwy_B           26 QIVVVGSQSSGKSSVLENIVGRD   48 (315)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             eEEEEcCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999864

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=95.80  E-value=0.0049  Score=51.55  Aligned_cols=23  Identities=17%  Similarity=0.239  Sum_probs=20.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++++|++|+|||||++.+.+-.
T Consensus        25 ki~~vG~~~~GKSsl~~~l~~~~   47 (194)
T 3reg_A           25 KIVVVGDGAVGKTCLLLAFSKGE   47 (194)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999998753

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=95.80  E-value=0.0046  Score=53.48  Aligned_cols=22  Identities=32%  Similarity=0.625  Sum_probs=20.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++|+|++|+|||||++.+.+-
T Consensus        31 kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           31 TIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999874

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=95.79  E-value=0.0047  Score=52.18  Aligned_cols=22  Identities=27%  Similarity=0.333  Sum_probs=20.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999864

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=95.79  E-value=0.005  Score=51.35  Aligned_cols=22  Identities=45%  Similarity=0.644  Sum_probs=20.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        24 ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           24 ELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999864

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.78  E-value=0.0047  Score=57.49  Aligned_cols=25  Identities=24%  Similarity=0.412  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCChHHHHHHHHHcCCC
Q 020527          109 EVVAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       109 e~~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      .+++|+||+|||||||.+.|+..+.
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~   32 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN   32 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC
Confidence            3799999999999999999987653

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.78  E-value=0.0051  Score=51.60  Aligned_cols=22  Identities=41%  Similarity=0.531  Sum_probs=20.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        30 ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           30 KLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999864

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=95.78  E-value=0.0048  Score=55.69  Aligned_cols=22  Identities=32%  Similarity=0.650  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHc
Q 020527          109 EVVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       109 e~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      .++.|.|++||||||+.+.|+.
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999986

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=95.78  E-value=0.0043  Score=51.34  Aligned_cols=22  Identities=36%  Similarity=0.451  Sum_probs=20.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++++|+.|+|||||++.+.+-
T Consensus        23 ~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           23 KVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             EEEEEEETTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999874

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=95.78  E-value=0.0058  Score=53.27  Aligned_cols=26  Identities=23%  Similarity=0.362  Sum_probs=22.6

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .+..+.|+|+.||||||+.+.|+.-+
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            45689999999999999999998654

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=95.78  E-value=0.0051  Score=51.11  Aligned_cols=22  Identities=32%  Similarity=0.416  Sum_probs=20.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        17 ~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           17 KILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999874

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=95.77  E-value=0.0054  Score=49.39  Aligned_cols=29  Identities=24%  Similarity=0.299  Sum_probs=24.1

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcCCCC
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRLYEP  134 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~  134 (325)
                      ..+.-+.|.||+|+|||++.+.|......
T Consensus        22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~   50 (145)
T 3n70_A           22 ETDIAVWLYGAPGTGRMTGARYLHQFGRN   50 (145)
T ss_dssp             TCCSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence            34566899999999999999999886543

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=95.76  E-value=0.0042  Score=54.51  Aligned_cols=28  Identities=18%  Similarity=0.438  Sum_probs=22.1

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcCCC
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      .+|-++.+.|++||||||+.+.|.-.+.
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~   50 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ   50 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5799999999999999999999987654

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=95.76  E-value=0.0047  Score=51.59  Aligned_cols=22  Identities=36%  Similarity=0.545  Sum_probs=20.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        19 ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           19 QVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             EEEEECCTTSCHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999874

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=95.76  E-value=0.0051  Score=51.77  Aligned_cols=23  Identities=26%  Similarity=0.364  Sum_probs=20.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        30 ki~v~G~~~~GKSsli~~l~~~~   52 (199)
T 2p5s_A           30 KIVLAGDAAVGKSSFLMRLCKNE   52 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            68999999999999999998743

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.75  E-value=0.0052  Score=51.99  Aligned_cols=23  Identities=26%  Similarity=0.372  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHcC
Q 020527          109 EVVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       109 e~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      =.++|+|+.|+|||||++.+.+-
T Consensus        21 ~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           21 MKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            36899999999999999999864

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.75  E-value=0.0055  Score=53.11  Aligned_cols=29  Identities=28%  Similarity=0.299  Sum_probs=24.8

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcCCCC
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRLYEP  134 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~  134 (325)
                      -+|.++.+.|+.||||||+++.|.-.+..
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~   32 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE   32 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            46889999999999999999999876653

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.74  E-value=0.0051  Score=52.18  Aligned_cols=23  Identities=17%  Similarity=0.288  Sum_probs=20.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++++|+.|+|||||++.+.+-.
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~~   49 (207)
T 2fv8_A           27 KLVVVGDGACGKTCLLIVFSKDE   49 (207)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSS
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            68999999999999999998743

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=95.74  E-value=0.0042  Score=50.98  Aligned_cols=22  Identities=27%  Similarity=0.442  Sum_probs=19.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++++|++|+|||||++.+.+-
T Consensus         9 ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            9 RLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEECCGGGCHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999864

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=95.73  E-value=0.0048  Score=50.73  Aligned_cols=28  Identities=21%  Similarity=0.228  Sum_probs=23.4

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHcCCCC
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLLRLYEP  134 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~~~  134 (325)
                      .+..+.|.||.|+|||||++.++.....
T Consensus        42 ~~~~vll~G~~G~GKT~la~~~~~~~~~   69 (187)
T 2p65_A           42 TKNNPILLGDPGVGKTAIVEGLAIKIVQ   69 (187)
T ss_dssp             SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence            3567889999999999999999876543

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.73  E-value=0.0062  Score=56.61  Aligned_cols=26  Identities=23%  Similarity=0.465  Sum_probs=23.3

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      ++.++.|+||+|||||||...|+.-+
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l   64 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHF   64 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHC
Confidence            45689999999999999999999765

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=95.72  E-value=0.0064  Score=49.86  Aligned_cols=23  Identities=17%  Similarity=0.092  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCChHHHHHHHHHcC
Q 020527          109 EVVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       109 e~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      =.++++|+.|+|||||++.+.+-
T Consensus         9 ~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            9 IKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999999864

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=95.70  E-value=0.0061  Score=53.80  Aligned_cols=27  Identities=30%  Similarity=0.577  Sum_probs=24.4

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHcCCC
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      +|.++.|.|++||||||+++.|...+.
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~   52 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQ   52 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999999987664

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=95.70  E-value=0.0058  Score=52.04  Aligned_cols=22  Identities=32%  Similarity=0.375  Sum_probs=20.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        27 ki~vvG~~~~GKSsLi~~l~~~   48 (217)
T 2f7s_A           27 KLLALGDSGVGKTTFLYRYTDN   48 (217)
T ss_dssp             EEEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4899999999999999999874

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=95.70  E-value=0.0043  Score=53.26  Aligned_cols=25  Identities=24%  Similarity=0.255  Sum_probs=21.9

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          108 NEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       108 Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      +-+++|+|++||||||+.+.|+..+
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            4578999999999999999998754

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=95.69  E-value=0.006  Score=51.26  Aligned_cols=24  Identities=25%  Similarity=0.470  Sum_probs=21.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      .++++|++|+|||||++.+.+-..
T Consensus        22 ki~~vG~~~vGKTsLi~~l~~~~~   45 (196)
T 3llu_A           22 RILLMGLRRSGKSSIQKVVFHKMS   45 (196)
T ss_dssp             EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhcCC
Confidence            589999999999999999988543

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=95.69  E-value=0.0054  Score=52.30  Aligned_cols=22  Identities=23%  Similarity=0.457  Sum_probs=20.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++|+|++|+|||||++.+.+-
T Consensus        30 ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           30 KIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999875

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=95.68  E-value=0.0059  Score=50.97  Aligned_cols=22  Identities=36%  Similarity=0.511  Sum_probs=19.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        23 ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           23 NLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHHhC
Confidence            5899999999999999888753

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.67  E-value=0.0056  Score=58.52  Aligned_cols=26  Identities=46%  Similarity=0.623  Sum_probs=22.9

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcC
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      ....++.|+|++||||||+.+.|+.-
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            45789999999999999999998763

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=95.67  E-value=0.0059  Score=52.22  Aligned_cols=22  Identities=27%  Similarity=0.456  Sum_probs=19.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++++|++|+|||||++.+.+-
T Consensus        36 ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           36 KVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999999863

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=95.66  E-value=0.0061  Score=51.16  Aligned_cols=23  Identities=22%  Similarity=0.213  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCChHHHHHHHHHcC
Q 020527          109 EVVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       109 e~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      =.++++|+.|+|||||++.+.+-
T Consensus        21 ~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           21 VKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC-
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            35899999999999999999864

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=95.65  E-value=0.0058  Score=54.33  Aligned_cols=23  Identities=39%  Similarity=0.512  Sum_probs=20.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++++|++|+|||||++.+.|-.
T Consensus        38 ~I~lvG~~g~GKSSLin~l~~~~   60 (262)
T 3def_A           38 TVLVLGKGGVGKSSTVNSLIGEQ   60 (262)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999999843

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=95.65  E-value=0.0065  Score=55.68  Aligned_cols=27  Identities=26%  Similarity=0.422  Sum_probs=24.6

Q ss_pred             EeeCCcEEEEEcCCCChHHHHHHHHHc
Q 020527          104 TIEANEVVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      -+++|+++.|.||+|+|||||...++.
T Consensus        94 Gl~~g~i~~i~G~~gsGKT~la~~la~  120 (322)
T 2i1q_A           94 GLESQSVTEFAGVFGSGKTQIMHQSCV  120 (322)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999999987774

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=95.64  E-value=0.0061  Score=51.81  Aligned_cols=23  Identities=39%  Similarity=0.423  Sum_probs=20.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++|+|++|+|||||++.+.+-.
T Consensus         9 ki~vvG~~~~GKTsli~~l~~~~   31 (214)
T 2fh5_B            9 AVLFVGLCDSGKTLLFVRLLTGQ   31 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999998643

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.62  E-value=0.0064  Score=56.01  Aligned_cols=25  Identities=32%  Similarity=0.461  Sum_probs=21.9

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          108 NEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       108 Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      +.+++|+||+|||||||...|+--+
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~   27 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRL   27 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhC
Confidence            4578999999999999999998754

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=95.61  E-value=0.0068  Score=53.22  Aligned_cols=26  Identities=15%  Similarity=0.247  Sum_probs=21.9

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      ...-+.|.||+|+|||||++.++...
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~~~   63 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVATEA   63 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHh
Confidence            34558899999999999999998743

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=95.61  E-value=0.0061  Score=51.43  Aligned_cols=22  Identities=23%  Similarity=0.356  Sum_probs=20.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++++|+.|+|||||++.+.+-
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           27 KLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999999874

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=95.60  E-value=0.0061  Score=54.41  Aligned_cols=23  Identities=30%  Similarity=0.486  Sum_probs=20.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++++|++|+|||||++.|.|-.
T Consensus        41 ~I~vvG~~g~GKSSLin~l~~~~   63 (270)
T 1h65_A           41 TILVMGKGGVGKSSTVNSIIGER   63 (270)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999999754

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=95.59  E-value=0.0074  Score=52.36  Aligned_cols=27  Identities=33%  Similarity=0.564  Sum_probs=24.3

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHcCCC
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      +|.++.+-|++||||||+++.|...+.
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~   28 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLE   28 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            488999999999999999999987665

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=95.58  E-value=0.0057  Score=54.96  Aligned_cols=23  Identities=26%  Similarity=0.371  Sum_probs=21.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++|+|+.|+|||||++.|.|-.
T Consensus        28 ~i~vvG~~~~GKSSLln~l~g~~   50 (299)
T 2aka_B           28 QIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             eEEEEeCCCCCHHHHHHHHHCCC
Confidence            69999999999999999999864

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=95.57  E-value=0.0042  Score=51.25  Aligned_cols=22  Identities=23%  Similarity=0.288  Sum_probs=9.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        10 ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C           10 KLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEEECCCCC------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999988753

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=95.54  E-value=0.061  Score=59.70  Aligned_cols=35  Identities=23%  Similarity=0.270  Sum_probs=27.1

Q ss_pred             ceeeeeE--EeeCCcEEEEEcCCCChHHHHHHHHHcC
Q 020527           97 ILNHVCL--TIEANEVVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus        97 iL~~isl--~i~~Ge~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      -|+.+-=  -+++|+++.|.||+|+|||||..-++.-
T Consensus       370 ~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~  406 (1706)
T 3cmw_A          370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA  406 (1706)
T ss_dssp             HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence            4555421  2889999999999999999998766543

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=95.54  E-value=0.0061  Score=51.20  Aligned_cols=22  Identities=32%  Similarity=0.445  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHc
Q 020527          109 EVVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       109 e~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      =.++|+|+.|+|||||++.+.+
T Consensus        30 ~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           30 MRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCS
T ss_pred             cEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999999865

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.53  E-value=0.007  Score=50.50  Aligned_cols=22  Identities=18%  Similarity=0.196  Sum_probs=20.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++++|+.|+|||||++.+.+-
T Consensus        20 ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           20 KCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999864

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=95.53  E-value=0.008  Score=52.29  Aligned_cols=29  Identities=31%  Similarity=0.567  Sum_probs=26.0

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcCCCC
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRLYEP  134 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~  134 (325)
                      .+|.++.+-|+.||||||+.+.|.-.+..
T Consensus         3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            36899999999999999999999987764

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.52  E-value=0.0068  Score=56.01  Aligned_cols=24  Identities=17%  Similarity=0.328  Sum_probs=21.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHcCC
Q 020527          109 EVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       109 e~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      ..+.|+||+|||||||.+.|+.-+
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l   29 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADAL   29 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            478999999999999999999755

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.51  E-value=0.0074  Score=52.80  Aligned_cols=26  Identities=42%  Similarity=0.576  Sum_probs=23.1

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHcCCC
Q 020527          108 NEVVAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       108 Ge~~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      |.+++|.|+.||||||+.+.|+..++
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            56899999999999999999997653

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=95.50  E-value=0.0061  Score=53.11  Aligned_cols=29  Identities=28%  Similarity=0.496  Sum_probs=24.2

Q ss_pred             EeeCCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          104 TIEANEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .+++..++.|+||.||||+|..+.|+--+
T Consensus        25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            34667789999999999999999998543

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=95.48  E-value=0.0099  Score=51.58  Aligned_cols=59  Identities=15%  Similarity=0.130  Sum_probs=37.9

Q ss_pred             cCCCCEEEEeCCCC----CCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCch----------HHH-hcCEEEEEe
Q 020527          233 LRDPAILLLDEATS----ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS----------TIK-AVDRIVVID  293 (325)
Q Consensus       233 ~~~p~llllDEPts----~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~----------~~~-~~d~v~~l~  293 (325)
                      -.+|+++++|--+.    .-|.....++...|..+.++  .+.++++++|-..          ..+ .||-|+.|.
T Consensus       133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~--~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~  206 (251)
T 2zts_A          133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLE--MGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD  206 (251)
T ss_dssp             HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHH--HCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred             hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHH--cCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence            45899999996432    11444455566666666654  4889999988432          123 389888875

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=95.44  E-value=0.031  Score=57.32  Aligned_cols=23  Identities=22%  Similarity=0.368  Sum_probs=21.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .+.+.||+|+|||++.+.|+...
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l  545 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESI  545 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999999876

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=95.44  E-value=0.0082  Score=51.79  Aligned_cols=22  Identities=36%  Similarity=0.634  Sum_probs=20.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++|+|++|+|||||++.+.|.
T Consensus        39 kVvlvG~~~vGKSSLl~r~~~~   60 (211)
T 2g3y_A           39 RVVLIGEQGVGKSTLANIFAGV   60 (211)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999874

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=95.44  E-value=0.0075  Score=51.75  Aligned_cols=23  Identities=26%  Similarity=0.469  Sum_probs=20.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++|+|+.|+|||||++-++.-.
T Consensus        40 ~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           40 AFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            68999999999999998887643

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=95.43  E-value=0.0085  Score=52.41  Aligned_cols=28  Identities=29%  Similarity=0.469  Sum_probs=24.6

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcCCC
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      .+|.++.+.|++||||||+.+.|...+.
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~   46 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYLS   46 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4588999999999999999999987654

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.42  E-value=0.0019  Score=57.27  Aligned_cols=32  Identities=22%  Similarity=0.343  Sum_probs=24.6

Q ss_pred             eeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcC
Q 020527           98 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus        98 L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      +.++++..+.|  +.|.||+|+|||||++.++..
T Consensus        36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred             HHHCCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence            33444444555  789999999999999999974

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=95.35  E-value=0.0087  Score=50.60  Aligned_cols=22  Identities=23%  Similarity=0.268  Sum_probs=19.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        31 ki~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           31 KLVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhhC
Confidence            4899999999999999999764

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=95.31  E-value=0.0089  Score=50.65  Aligned_cols=21  Identities=19%  Similarity=0.249  Sum_probs=19.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHc
Q 020527          110 VVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      .++++|+.|+|||||++.+.+
T Consensus        32 ki~vvG~~~~GKSsLi~~l~~   52 (204)
T 4gzl_A           32 KCVVVGDGAVGKTCLLISYTT   52 (204)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHh
Confidence            689999999999999988874

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=95.30  E-value=0.0039  Score=53.21  Aligned_cols=22  Identities=32%  Similarity=0.623  Sum_probs=19.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        13 ki~vvG~~~~GKSsli~~l~~~   34 (218)
T 4djt_A           13 KICLIGDGGVGKTTYINRVLDG   34 (218)
T ss_dssp             EEEEECCTTSSHHHHHCBCTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999998854

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=95.26  E-value=0.006  Score=50.69  Aligned_cols=22  Identities=27%  Similarity=0.400  Sum_probs=19.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHc
Q 020527          109 EVVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       109 e~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      =.++++|+.|+|||||++.+.+
T Consensus        23 ~~i~v~G~~~~GKssli~~l~~   44 (189)
T 2x77_A           23 IRVLMLGLDNAGKTSILYRLHL   44 (189)
T ss_dssp             EEEEEEEETTSSHHHHHHHTCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            3699999999999999999854

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=95.24  E-value=0.01  Score=51.02  Aligned_cols=23  Identities=26%  Similarity=0.443  Sum_probs=20.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        15 ki~v~G~~~vGKSsli~~l~~~~   37 (223)
T 3cpj_B           15 KIVLIGDSGVGKSNLLSRFTKNE   37 (223)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999998753

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.23  E-value=0.01  Score=54.47  Aligned_cols=25  Identities=20%  Similarity=0.398  Sum_probs=21.8

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          108 NEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       108 Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      ...++|+||+|||||||...|+.-+
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~   34 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKIL   34 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhC
Confidence            3578999999999999999998654

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.22  E-value=0.006  Score=54.21  Aligned_cols=28  Identities=43%  Similarity=0.568  Sum_probs=24.1

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcCCC
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      +++-+++|.|+.||||||+.+.|+..+.
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~   49 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQLCE   49 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            5678999999999999999999987653

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=95.20  E-value=0.0025  Score=61.41  Aligned_cols=37  Identities=27%  Similarity=0.332  Sum_probs=29.0

Q ss_pred             cEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEe
Q 020527          109 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP  145 (325)
Q Consensus       109 e~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~  145 (325)
                      .+++++|++|+||||++..|++.+.....+|.+-..|
T Consensus       100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D  136 (432)
T 2v3c_C          100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD  136 (432)
T ss_dssp             CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence            5899999999999999999999876444456554433

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=95.19  E-value=0.01  Score=50.72  Aligned_cols=22  Identities=23%  Similarity=0.401  Sum_probs=20.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        29 ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           29 KLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5899999999999999998864

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=95.18  E-value=0.0043  Score=52.15  Aligned_cols=22  Identities=32%  Similarity=0.504  Sum_probs=4.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        22 ~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           22 KVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEC-----------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999988764

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=95.18  E-value=0.0095  Score=57.41  Aligned_cols=35  Identities=29%  Similarity=0.501  Sum_probs=28.3

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEE
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI  141 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i  141 (325)
                      ++.+++++|++|+||||++.-|+..+....-+|.+
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll  133 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV  133 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence            46799999999999999999999877654345544

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=95.17  E-value=0.0094  Score=50.32  Aligned_cols=52  Identities=15%  Similarity=0.232  Sum_probs=35.1

Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCch-----------HHHhcCEEEEEe
Q 020527          234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS-----------TIKAVDRIVVID  293 (325)
Q Consensus       234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~-----------~~~~~d~v~~l~  293 (325)
                      .+++++++||.-- +++.    +.+.+..+.+   .|..|++..++.+           .+..||.|.-|+
T Consensus        75 ~~~dvviIDE~Q~-~~~~----~~~~l~~l~~---~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~  137 (184)
T 2orw_A           75 EDTRGVFIDEVQF-FNPS----LFEVVKDLLD---RGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK  137 (184)
T ss_dssp             TTEEEEEECCGGG-SCTT----HHHHHHHHHH---TTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred             CCCCEEEEECccc-CCHH----HHHHHHHHHH---CCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence            3678999999854 5543    3455555554   2778888888555           234589997775

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=95.09  E-value=0.011  Score=49.99  Aligned_cols=22  Identities=18%  Similarity=0.140  Sum_probs=19.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        11 ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A           11 KCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999998853

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=94.98  E-value=0.013  Score=50.40  Aligned_cols=23  Identities=26%  Similarity=0.430  Sum_probs=20.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      ++.|+||.||||+|..+.|+--+
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~   24 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEK   24 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999998643

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=94.93  E-value=0.013  Score=55.64  Aligned_cols=24  Identities=33%  Similarity=0.559  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCChHHHHHHHHHcCC
Q 020527          109 EVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       109 e~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .+++|+||+|||||||.+.|+--+
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~   26 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKF   26 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             cEEEEECcchhhHHHHHHHHHHHC
Confidence            478999999999999999988544

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=94.90  E-value=0.015  Score=52.35  Aligned_cols=27  Identities=22%  Similarity=0.319  Sum_probs=23.0

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHcCCC
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      ++..+.|.||+|+|||||.+.++..+.
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~l~   92 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGLLH   92 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence            456799999999999999998887653

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=94.85  E-value=0.014  Score=53.96  Aligned_cols=39  Identities=26%  Similarity=0.314  Sum_probs=29.7

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCE
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF  144 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~  144 (325)
                      .+|..+.|.||+|+|||||++.++..+......+.+++.
T Consensus        68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~  106 (368)
T 3uk6_A           68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGS  106 (368)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccch
Confidence            346789999999999999999999877544344555443

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=94.84  E-value=0.014  Score=49.03  Aligned_cols=44  Identities=20%  Similarity=0.304  Sum_probs=31.0

Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchH
Q 020527          234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST  282 (325)
Q Consensus       234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~  282 (325)
                      .++.++++||. ..+++.....+.+.+....    .+..+|++|.....
T Consensus       101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~----~~~~~i~~~~~~~~  144 (226)
T 2chg_A          101 APFKIIFLDEA-DALTADAQAALRRTMEMYS----KSCRFILSCNYVSR  144 (226)
T ss_dssp             CSCEEEEEETG-GGSCHHHHHHHHHHHHHTT----TTEEEEEEESCGGG
T ss_pred             cCceEEEEeCh-hhcCHHHHHHHHHHHHhcC----CCCeEEEEeCChhh
Confidence            36889999996 5577777777777776642    35667777776653

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=94.77  E-value=0.019  Score=51.88  Aligned_cols=27  Identities=30%  Similarity=0.389  Sum_probs=22.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHHcCCCCC
Q 020527          109 EVVAIVGLSGSGKSTFVNLLLRLYEPS  135 (325)
Q Consensus       109 e~~~iiG~nGsGKSTLl~~l~gl~~~~  135 (325)
                      -.++++|.+|+|||||++.|.|-....
T Consensus       121 ~~v~~vG~~nvGKSsliN~l~~~~~~~  147 (282)
T 1puj_A          121 IRALIIGIPNVGKSTLINRLAKKNIAK  147 (282)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCC-
T ss_pred             ceEEEEecCCCchHHHHHHHhcCceee
Confidence            368999999999999999999865433

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=94.66  E-value=0.015  Score=54.12  Aligned_cols=26  Identities=35%  Similarity=0.369  Sum_probs=22.4

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHcCCC
Q 020527          108 NEVVAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       108 Ge~~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      .-+++|+|+.|+|||||++.|++.+.
T Consensus        79 ~~~I~i~G~~G~GKSTl~~~L~~~l~  104 (355)
T 3p32_A           79 AHRVGITGVPGVGKSTAIEALGMHLI  104 (355)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34799999999999999999987653

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=94.63  E-value=0.019  Score=52.82  Aligned_cols=27  Identities=19%  Similarity=0.230  Sum_probs=23.4

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .+..-+.|.||.|+|||||++.++...
T Consensus        43 ~~~~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           43 TPWRGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCccHHHHHHHHHHHc
Confidence            445678999999999999999999865

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=94.53  E-value=0.013  Score=50.01  Aligned_cols=40  Identities=15%  Similarity=0.222  Sum_probs=27.9

Q ss_pred             HHHHHHHHcCCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHhh
Q 020527          225 RIAIARAILRDPAILLLDEATS-----ALDSESEHYVKGVLHALR  264 (325)
Q Consensus       225 Rv~iAral~~~p~llllDEPts-----~LD~~~~~~i~~~l~~l~  264 (325)
                      .-.|++.+..+|.+...++|+.     .+|+...+++...++..+
T Consensus       166 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
T 3gj0_A          166 FLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQ  210 (221)
T ss_dssp             HHHHHHHHHTCTTCCEEECCCBCCCSSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcccccccCCCCCCCCCCcchhhhhhhHHHHhhhh
Confidence            3467777888888777777765     677777777776666543

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=94.52  E-value=0.021  Score=49.08  Aligned_cols=26  Identities=27%  Similarity=0.429  Sum_probs=23.0

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHcCCC
Q 020527          108 NEVVAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       108 Ge~~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      |.+++|=|+-||||||+++.|.-.+.
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L~   27 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRLV   27 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence            56899999999999999999987664

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=94.52  E-value=0.021  Score=52.11  Aligned_cols=24  Identities=29%  Similarity=0.524  Sum_probs=21.0

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHcC
Q 020527          108 NEVVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       108 Ge~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      +-.++|+|+.|+|||||++.+.+-
T Consensus         3 ~~KI~lvG~~~vGKSSLi~~l~~~   26 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRSIIFSN   26 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            346899999999999999998765

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=94.52  E-value=0.029  Score=49.48  Aligned_cols=28  Identities=29%  Similarity=0.377  Sum_probs=23.9

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHcCCCC
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLLRLYEP  134 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~~~  134 (325)
                      .+..+.|.||+|+|||+|++.+......
T Consensus        28 ~~~~vll~G~~GtGKt~la~~i~~~~~~   55 (265)
T 2bjv_A           28 LDKPVLIIGERGTGKELIASRLHYLSSR   55 (265)
T ss_dssp             SCSCEEEECCTTSCHHHHHHHHHHTSTT
T ss_pred             CCCCEEEECCCCCcHHHHHHHHHHhcCc
Confidence            4567889999999999999999987653

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=94.51  E-value=0.014  Score=54.56  Aligned_cols=30  Identities=20%  Similarity=0.237  Sum_probs=22.7

Q ss_pred             CCCChHHHHHHHHHHHH---cC--CCCEEEEeCCC
Q 020527          216 DLLSGGQKQRIAIARAI---LR--DPAILLLDEAT  245 (325)
Q Consensus       216 ~~LSgGq~QRv~iAral---~~--~p~llllDEPt  245 (325)
                      ..+|+||+||.+++|+|   +.  +++++++|||+
T Consensus       295 ~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~  329 (365)
T 1lw7_A          295 LRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS  329 (365)
T ss_dssp             ------CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             CcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence            35899999999999999   76  89999999997

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=94.51  E-value=0.019  Score=54.57  Aligned_cols=23  Identities=30%  Similarity=0.408  Sum_probs=19.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++|+|.+++|||||++.|.|--
T Consensus         2 kI~ivG~pnvGKSTL~n~L~~~~   24 (397)
T 1wxq_A            2 EIGVVGKPNVGKSTFFSAATLVD   24 (397)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            47999999999999999999853

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=94.50  E-value=0.021  Score=51.71  Aligned_cols=26  Identities=31%  Similarity=0.394  Sum_probs=21.9

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      +...+.|.||+|+|||+|.+.++..+
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~~l   60 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFRKM   60 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            33467888999999999999999755

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=94.48  E-value=0.021  Score=52.72  Aligned_cols=27  Identities=30%  Similarity=0.356  Sum_probs=24.3

Q ss_pred             EeeCCcEEEEEcCCCChHHHHHHHHHc
Q 020527          104 TIEANEVVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      -+.+|..+.|.||.|+|||||...++.
T Consensus       119 Gi~~gsviLI~GpPGsGKTtLAlqlA~  145 (331)
T 2vhj_A          119 HRYASGMVIVTGKGNSGKTPLVHALGE  145 (331)
T ss_dssp             EEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            577888899999999999999998875

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=94.48  E-value=0.016  Score=55.48  Aligned_cols=22  Identities=50%  Similarity=0.543  Sum_probs=20.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++|+|++|+|||||++.|+|-
T Consensus         5 ~V~ivG~~nvGKStL~n~l~~~   26 (436)
T 2hjg_A            5 VVAIVGRPNVGKSTIFNRIAGE   26 (436)
T ss_dssp             EEEEECSTTSSHHHHHHHHEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999984

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=94.48  E-value=0.01  Score=57.30  Aligned_cols=36  Identities=25%  Similarity=0.434  Sum_probs=27.7

Q ss_pred             eeeEEeeCCcE--EEEEcCCCChHHHHHHHHHcCCCCC
Q 020527          100 HVCLTIEANEV--VAIVGLSGSGKSTFVNLLLRLYEPS  135 (325)
Q Consensus       100 ~isl~i~~Ge~--~~iiG~nGsGKSTLl~~l~gl~~~~  135 (325)
                      .+.-.++.|..  +.|.||+|+|||||+++|+......
T Consensus        40 ~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~   77 (447)
T 3pvs_A           40 PLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANAD   77 (447)
T ss_dssp             HHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred             HHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence            33344555554  8999999999999999999887543

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=94.47  E-value=0.023  Score=51.94  Aligned_cols=26  Identities=19%  Similarity=0.231  Sum_probs=22.9

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHcCCC
Q 020527          108 NEVVAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       108 Ge~~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      +..+.|.||+|+|||+|+++|+....
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~  177 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELS  177 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHH
Confidence            67899999999999999999986543

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=94.45  E-value=0.018  Score=51.08  Aligned_cols=26  Identities=19%  Similarity=0.178  Sum_probs=22.2

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcC
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .+...+.|.||+|+|||||++.++..
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            34457889999999999999999875

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=94.44  E-value=0.019  Score=53.98  Aligned_cols=25  Identities=36%  Similarity=0.531  Sum_probs=22.8

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHcC
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      ++..++++|++|+|||||++.|.|-
T Consensus       161 ~~~~i~~vG~~nvGKStliN~L~~~  185 (369)
T 3ec1_A          161 EGGDVYVVGCTNVGKSTFINRIIEE  185 (369)
T ss_dssp             TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccCcEEEEcCCCCchHHHHHHHHhh
Confidence            4667999999999999999999986

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=93.44  E-value=0.007  Score=51.05  Aligned_cols=21  Identities=19%  Similarity=0.249  Sum_probs=18.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHc
Q 020527          110 VVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      .++++|+.|+|||||++.+.+
T Consensus        32 ki~v~G~~~~GKSsli~~l~~   52 (204)
T 3th5_A           32 KCVVVGDGAVGKTCLLISYTT   52 (204)
Confidence            589999999999999988764

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=94.35  E-value=0.021  Score=51.19  Aligned_cols=25  Identities=24%  Similarity=0.464  Sum_probs=21.9

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          108 NEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       108 Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      +..+.|.||+|+||||+++.++..+
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~l   74 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKLA   74 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHh
Confidence            3458899999999999999999865

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=94.32  E-value=0.021  Score=53.10  Aligned_cols=25  Identities=32%  Similarity=0.592  Sum_probs=22.1

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          108 NEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       108 Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      +..+.|.||+|+||||+.+.|+..+
T Consensus        51 ~~~vll~GppGtGKT~la~~ia~~~   75 (363)
T 3hws_A           51 KSNILLIGPTGSGKTLLAETLARLL   75 (363)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHc
Confidence            4468899999999999999999876

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=94.30  E-value=0.036  Score=50.89  Aligned_cols=34  Identities=29%  Similarity=0.285  Sum_probs=27.3

Q ss_pred             CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHc
Q 020527           96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus        96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      ..++..-+.+. |.-+.|.|+||+||||+...+..
T Consensus       136 ~~~H~~~v~~~-g~gvli~G~sG~GKStlal~l~~  169 (312)
T 1knx_A          136 AQIHGVLLEVF-GVGVLLTGRSGIGKSECALDLIN  169 (312)
T ss_dssp             EEEEEEEEEET-TEEEEEEESSSSSHHHHHHHHHT
T ss_pred             ceeEEEEEEEC-CEEEEEEcCCCCCHHHHHHHHHH
Confidence            46777666664 77899999999999999877653

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=94.28  E-value=0.014  Score=54.25  Aligned_cols=23  Identities=26%  Similarity=0.371  Sum_probs=21.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++|+|+.|+|||||++.|.|.-
T Consensus        33 ~I~vvG~~~~GKSSLln~L~g~~   55 (353)
T 2x2e_A           33 QIAVVGGQSAGKSSVLENFVGRD   55 (353)
T ss_dssp             EEEEECBTTSSHHHHHHTTTTSC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999854

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=94.27  E-value=0.026  Score=51.68  Aligned_cols=25  Identities=20%  Similarity=0.315  Sum_probs=22.0

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHcC
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      +..-+.|.||+|+|||+|++.++..
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            4556899999999999999999875

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=94.24  E-value=0.026  Score=49.57  Aligned_cols=24  Identities=25%  Similarity=0.490  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHcCC
Q 020527          109 EVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       109 e~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      -.+||+|+.||||||+.+.|+--+
T Consensus         9 ~~~~~~G~pGsGKsT~a~~L~~~~   32 (230)
T 3gmt_A            9 MRLILLGAPGAGKGTQANFIKEKF   32 (230)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cceeeECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999997543

>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...

Probab=94.23  E-value=0.029  Score=54.40  Aligned_cols=30  Identities=17%  Similarity=0.285  Sum_probs=26.7

Q ss_pred             EEeeCCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          103 LTIEANEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       103 l~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      +.+.+|+..+|+|++|+|||||+..|+.-.
T Consensus       148 ~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~  177 (482)
T 2ck3_D          148 APYAKGGKIGLFGGAGVGKTVLIMELINNV  177 (482)
T ss_dssp             SCEETTCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             cccccCCeeeeecCCCCChHHHHHHHHHhh
Confidence            478999999999999999999998887644

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=94.22  E-value=0.016  Score=56.25  Aligned_cols=26  Identities=35%  Similarity=0.396  Sum_probs=22.5

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcC
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      ++|=.++|+|++|+|||||++.++|-
T Consensus       222 r~~~kV~ivG~~nvGKSSLln~L~~~  247 (462)
T 3geh_A          222 RTGLKVAIVGRPNVGKSSLLNAWSQS  247 (462)
T ss_dssp             HHCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            34556999999999999999999874

>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}

Probab=94.21  E-value=0.026  Score=53.44  Aligned_cols=33  Identities=18%  Similarity=0.170  Sum_probs=28.3

Q ss_pred             eeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          100 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       100 ~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      |.=+.|.+|+..+|+|++|+|||||+..|+...
T Consensus       167 D~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i  199 (427)
T 3l0o_A          167 DLFAPIGKGQRGMIVAPPKAGKTTILKEIANGI  199 (427)
T ss_dssp             HHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred             hhcccccCCceEEEecCCCCChhHHHHHHHHHH
Confidence            344578999999999999999999999888754

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=94.21  E-value=0.02  Score=53.78  Aligned_cols=26  Identities=35%  Similarity=0.638  Sum_probs=23.4

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      ++..++++|++|+|||||++.|.|-.
T Consensus       159 ~~~~i~~vG~~nvGKStliN~L~~~~  184 (368)
T 3h2y_A          159 GGKDVYVVGCTNVGKSTFINRMIKEF  184 (368)
T ss_dssp             TTSCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred             ccceEEEecCCCCChhHHHHHHHhhh
Confidence            56789999999999999999999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	325
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	4e-96
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	3e-95
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	6e-91
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	2e-86
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	4e-83
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	2e-76
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	2e-55
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	1e-51
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	8e-48
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	3e-47
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	1e-45
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	1e-45
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	4e-44
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	1e-43
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	1e-42
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	2e-41
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	2e-40
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	8e-39
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	6e-36
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	5e-35
d1ye8a1	178	c.37.1.11 (A:1-178) Hypothetical kinase-like prote	7e-27
g1ii8.1	369	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	5e-12
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	1e-11
d2i3ba1	189	c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57	7e-06
d1yj5a2	172	c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' p	2e-04
d1w1wa_	427	c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac	3e-04
d1np6a_	170	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	0.001
d1qhxa_	178	c.37.1.3 (A:) Chloramphenicol phosphotransferase {	0.003
d2hyda2	323	f.37.1.1 (A:1-323) Putative multidrug export ATP-b	0.003
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	0.004

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score =  282 bits (724), Expect = 4e-96
 Identities = 114/252 (45%), Positives = 161/252 (63%), Gaps = 7/252 (2%)

Query: 72  KLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 131
            + R  G ++F N++F YP R  VP L ++ L I A + VA+VG SGSGKST  +L+ R 
Sbjct: 6   VIDRATGDLEFRNVTFTYPGRE-VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF 64

Query: 132 YEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEW 191
           Y+  +G I +DG  L +  +  LR ++  V Q   L    + +NI Y   ++   E IE 
Sbjct: 65  YDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEE 124

Query: 192 AAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALD 249
           AA+ AY  +FI  +  G +T++ ++  LLSGGQ+QRIAIARA+LRD  IL+LDEATSALD
Sbjct: 125 AARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALD 184

Query: 250 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK 309
           +ESE  ++  L  L+ +    RT +VIAHRLSTI+  D IVV++DG I+E G H+ELL +
Sbjct: 185 TESERAIQAALDELQKN----RTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ 240

Query: 310 GRLYAKLVKRQT 321
             +YA+L K Q 
Sbjct: 241 HGVYAQLHKMQF 252

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score =  280 bits (718), Expect = 3e-95
 Identities = 113/250 (45%), Positives = 152/250 (60%), Gaps = 8/250 (3%)

Query: 73  LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 132
           ++   G +   ++SF Y      PIL  + L+IE  E VA VG+SG GKST +NL+ R Y
Sbjct: 10  IEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY 68

Query: 133 EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWA 192
           + + GQI IDG  + D     LR +IG V Q+  L    +K NI+ G P    +E++  A
Sbjct: 69  DVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRP-TATDEEVVEA 127

Query: 193 AKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDS 250
           AK A  H+FI++LP GY+T V +    LSGGQKQR++IAR  L +P IL+LDEATSALD 
Sbjct: 128 AKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDL 187

Query: 251 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG 310
           ESE  ++  L  L  D    RT +++AHRLSTI   D+IVVI++G I+E G H EL+ K 
Sbjct: 188 ESESIIQEALDVLSKD----RTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQ 243

Query: 311 RLYAKLVKRQ 320
             Y  L   Q
Sbjct: 244 GAYEHLYSIQ 253

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  269 bits (689), Expect = 6e-91
 Identities = 102/250 (40%), Positives = 154/250 (61%), Gaps = 4/250 (1%)

Query: 71  VKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 130
           +    L G VQF ++SF YP+RP V +L  +  T+   EV A+VG +GSGKST   LL  
Sbjct: 3   LTPLHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQN 62

Query: 131 LYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIE 190
           LY+P+ GQ+ +DG PL   + R+L  ++  VGQEPQ+    ++ NI YG  +    E+I 
Sbjct: 63  LYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEIT 122

Query: 191 WAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSAL 248
            AA ++  H FI  LP GY+T VD+    LSGGQ+Q +A+ARA++R P +L+LD+ATSAL
Sbjct: 123 AAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSAL 182

Query: 249 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLH 308
           D+ S+  V+ +L+      +  R+V++I   LS ++  D I+ ++ G I E G H +L+ 
Sbjct: 183 DANSQLQVEQLLYESPE--RYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLME 240

Query: 309 KGRLYAKLVK 318
           K   Y  +V+
Sbjct: 241 KKGCYWAMVQ 250

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score =  257 bits (659), Expect = 2e-86
 Identities = 98/243 (40%), Positives = 140/243 (57%), Gaps = 8/243 (3%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           +   ++ F Y       IL  +    + N ++A  G SG GKST  +LL R Y+P+ G+I
Sbjct: 2   LSARHVDFAYDDSE--QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59

Query: 140 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVH 199
            IDG P+ ++ +   R +IGFV Q+  ++   I+ N+ YG   D  +ED+      A+  
Sbjct: 60  TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119

Query: 200 EFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 257
            F+ ++P    T V +    +SGGQ+QR+AIARA LR+P IL+LDEAT++LDSESE  V+
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179

Query: 258 GVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 317
             L +L       RT +VIAHRLSTI   D+I  I+ G+I   G H EL+    LYAK V
Sbjct: 180 KALDSLMKG----RTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYV 235

Query: 318 KRQ 320
             Q
Sbjct: 236 SEQ 238

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score =  249 bits (637), Expect = 4e-83
 Identities = 113/246 (45%), Positives = 152/246 (61%), Gaps = 9/246 (3%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           + F NI F Y    +  IL+++ L+I+  EV+ IVG SGSGKST   L+ R Y P +GQ+
Sbjct: 2   ITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60

Query: 140 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVH 199
            IDG  L   D  WLR ++G V Q+  LL   I  NI       +  E + +AAK A  H
Sbjct: 61  LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLA-NPGMSVEKVIYAAKLAGAH 119

Query: 200 EFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 257
           +FI  L  GY T+V +    LSGGQ+QRIAIARA++ +P IL+ DEATSALD ESEH + 
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179

Query: 258 GVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL-HKGRLYAKL 316
             +H +       RTVI+IAHRLST+K  DRI+V++ G+I+E G H ELL     LY+ L
Sbjct: 180 RNMHKICKG----RTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 235

Query: 317 VKRQTE 322
            + Q++
Sbjct: 236 YQLQSD 241

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  233 bits (596), Expect = 2e-76
 Identities = 63/241 (26%), Positives = 111/241 (46%), Gaps = 21/241 (8%)

Query: 84  NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 143
           N+SF +      P+L ++ L IE  E++AI G +GSGK++ + L+L   E S+G I   G
Sbjct: 38  NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 97

Query: 144 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFIL 203
                        ++ F  Q   ++   IK NI++G   D      +   K   + + I 
Sbjct: 98  -------------RVSFCSQFSWIMPGTIKENIIFGVSYD--EYRYKSVVKACQLQQDIT 142

Query: 204 SLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLH 261
                  T++ +    LSGGQ+ RI++ARA+ +D  + LLD     LD  +E     V  
Sbjct: 143 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQ---VFE 199

Query: 262 ALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLH-KGRLYAKLVKRQ 320
           +        +T I++  ++  ++  D+I+++  G     G  +EL   +    +KL+   
Sbjct: 200 SCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGYD 259

Query: 321 T 321
           T
Sbjct: 260 T 260

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  178 bits (453), Expect = 2e-55
 Identities = 72/229 (31%), Positives = 120/229 (52%), Gaps = 10/229 (4%)

Query: 80  VQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 138
           ++  N++  Y      +  L +V L I+  E V+I+G SGSGKST +N++  L +P++G+
Sbjct: 2   IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61

Query: 139 IYIDGFPLTDLD----IRWLREKIGFVGQEPQLLQ-MDIKSNIMYGC-PKDVKNEDIEWA 192
           +YID     DLD     +  R+KIGFV Q+  L+  +    N+      K       E  
Sbjct: 62  VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121

Query: 193 AKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 252
            K+A     +  L   +     +  LSGGQ+QR+AIARA+  +P I+L D+ T ALDS++
Sbjct: 122 RKRALECLKMAELEERFANHKPNQ-LSGGQQQRVAIARALANNPPIILADQPTGALDSKT 180

Query: 253 EHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 301
              +  +L  L    +  +TV+V+ H ++  +  +RI+ + DG +    
Sbjct: 181 GEKIMQLLKKLNE--EDGKTVVVVTHDINVARFGERIIYLKDGEVEREE 227

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score =  168 bits (427), Expect = 1e-51
 Identities = 69/240 (28%), Positives = 123/240 (51%), Gaps = 23/240 (9%)

Query: 77  MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 136
           M  V+  N++  + +      +N + LTI+  E + ++G SG GK+T + ++  L EP++
Sbjct: 4   MVEVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTE 60

Query: 137 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMY-----GCPKDVKNEDIE 190
           G+IY     +T L  +     I  V Q   +   M +  NI +       PKD  ++ + 
Sbjct: 61  GRIYFGDRDVTYLPPKD--RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVR 118

Query: 191 WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 250
           WAA+   + E +   P           LSGGQ+QR+A+ARAI+ +P +LL+DE  S LD+
Sbjct: 119 WAAELLQIEELLNRYPAQ---------LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDA 169

Query: 251 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHK 309
           +    ++  +  L+   K K T I + H       + DRI V++ G+++++G+  E+  +
Sbjct: 170 KLRVAMRAEIKKLQ--QKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 227

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score =  158 bits (402), Expect = 8e-48
 Identities = 71/241 (29%), Positives = 117/241 (48%), Gaps = 22/241 (9%)

Query: 80  VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 138
           ++  NI+  +     T+  LN+V L + A ++  ++G SG+GKST +  +  L  P++G 
Sbjct: 2   IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61

Query: 139 IYIDGFPLTDL---DIRWLREKIGFVGQEPQLL-QMDIKSNIM-----YGCPKDVKNEDI 189
           + +DG  LT L   ++   R +IG + Q   LL    +  N+         PKD     +
Sbjct: 62  VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121

Query: 190 EWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 249
                   + +   S P           LSGGQKQR+AIARA+  +P +LL DEATSALD
Sbjct: 122 TELLSLVGLGDKHDSYP---------SNLSGGQKQRVAIARALASNPKVLLCDEATSALD 172

Query: 250 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLH 308
             +   +  +L  +        T+++I H +  +K + D + VI +G +IE    +E+  
Sbjct: 173 PATTRSILELLKDINRRLGL--TILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230

Query: 309 K 309
            
Sbjct: 231 H 231

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score =  157 bits (399), Expect = 3e-47
 Identities = 68/251 (27%), Positives = 115/251 (45%), Gaps = 35/251 (13%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           +  +++   Y       +L  V L   A +V++I+G SGSGKSTF+  +  L +PS+G I
Sbjct: 3   LHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59

Query: 140 YIDGFPLTDL-------------DIRWLREKIGFVGQEPQLL-QMDIKSNIMY------G 179
            ++G  +  +              +R LR ++  V Q   L   M +  N+M       G
Sbjct: 60  IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 119

Query: 180 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 239
             K    E       +  + E        +        LSGGQ+QR++IARA+  +P +L
Sbjct: 120 LSKHDARERALKYLAKVGIDERAQGKYPVH--------LSGGQQQRVSIARALAMEPDVL 171

Query: 240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRII 298
           L DE TSALD E    V  VL  ++   +  +T++V+ H +   + V   ++ +  G+I 
Sbjct: 172 LFDEPTSALDPEL---VGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 228

Query: 299 EVGNHAELLHK 309
           E G+  ++   
Sbjct: 229 EEGDPEQVFGN 239

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score =  153 bits (387), Expect = 1e-45
 Identities = 46/228 (20%), Positives = 90/228 (39%), Gaps = 22/228 (9%)

Query: 96  PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 155
             L  +   + A E++ +VG +G+GKST +  +  +     G I   G PL       L 
Sbjct: 13  TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQFAGQPLEAWSATKLA 71

Query: 156 EKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 214
               ++ Q+        +   +        + E +   A    + + +            
Sbjct: 72  LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRST-------- 123

Query: 215 DDLLSGGQKQRIAIARAILR-------DPAILLLDEATSALDSESEHYVKGVLHALRNDC 267
            + LSGG+ QR+ +A  +L+          +LLLDE  ++LD   +  +  +L AL   C
Sbjct: 124 -NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL---C 179

Query: 268 KTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHKGRLYA 314
           +    +++ +H L+       R  ++  G+++  G   E+L    L  
Sbjct: 180 QQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQ 227

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score =  153 bits (387), Expect = 1e-45
 Identities = 63/240 (26%), Positives = 110/240 (45%), Gaps = 17/240 (7%)

Query: 77  MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 136
           M  V+ V++   +     V  +  + L ++  E + ++G SG GK+T + ++  L EPS 
Sbjct: 1   MAGVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSR 57

Query: 137 GQIYIDGFPLTDLD----IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWA 192
           GQIYI    + D +    +      I  V Q   L       + +   P  ++    +  
Sbjct: 58  GQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIA-FPLKLRKVPRQEI 116

Query: 193 AKQAYVHEFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDS 250
            ++      +  L  G   L++     LSGGQ+QR+A+ RAI+R P + L+DE  S LD+
Sbjct: 117 DQRV---REVAEL-LGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDA 172

Query: 251 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHK 309
           +    ++  L  L+       T I + H       + DRI V++ G + +VG+  E+  K
Sbjct: 173 KLRVRMRAELKKLQRQLGV--TTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  148 bits (376), Expect = 4e-44
 Identities = 66/237 (27%), Positives = 108/237 (45%), Gaps = 23/237 (9%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           VQ  N++  +     V +   + L I   E V  VG SG GKST + ++  L   + G +
Sbjct: 1   VQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57

Query: 140 YIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMY-----GCPKDVKNEDIEWAA 193
           +I    + D         +G V Q   L   + +  N+ +     G  K+V N+ +   A
Sbjct: 58  FIGEKRMNDTPPA--ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 115

Query: 194 KQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 253
           +   +   +   P           LSGGQ+QR+AI R ++ +P++ LLDE  S LD+   
Sbjct: 116 EVLQLAHLLDRKP---------KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALR 166

Query: 254 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHK 309
             ++  +  L    +  RT+I + H       + D+IVV+D GR+ +VG   EL H 
Sbjct: 167 VQMRIEISRLH--KRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  148 bits (374), Expect = 1e-43
 Identities = 56/247 (22%), Positives = 111/247 (44%), Gaps = 22/247 (8%)

Query: 77  MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 136
           M  ++  NI  ++        L+ V +++   +V  I+G +GSGKST +N++    +  +
Sbjct: 2   MEILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADE 58

Query: 137 GQIYIDGFPLTDLDIRWL-REKIGFVGQEP-QLLQMDIKSNIMYGCPKDVKN-------- 186
           G++Y +   +T+ +   L    I    Q P  L +M +  N++ G     ++        
Sbjct: 59  GRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYK 118

Query: 187 ---EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDE 243
                 E   ++A+     L L   Y+    +  LSGGQ + + I RA++ +P ++++DE
Sbjct: 119 KWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE--LSGGQMKLVEIGRALMTNPKMIVMDE 176

Query: 244 ATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGN 302
             + +     H +   +  L+       T ++I HRL  +    D + V+ +G+II  G 
Sbjct: 177 PIAGVAPGLAHDIFNHVLELK---AKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 233

Query: 303 HAELLHK 309
             E +  
Sbjct: 234 GEEEIKN 240

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score =  145 bits (366), Expect = 1e-42
 Identities = 59/254 (23%), Positives = 114/254 (44%), Gaps = 29/254 (11%)

Query: 78  GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 137
           G V   ++      +    IL  +   IE  E+  ++G +G+GK+T + ++  L +PS G
Sbjct: 1   GAVVVKDLRKRIGKKE---ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 57

Query: 138 QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNI-----MYGCPKDVKNEDIEW 191
            + + G      +   +R+ I ++ +E    + M     +      Y        E +E 
Sbjct: 58  IVTVFGKN-VVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVER 116

Query: 192 AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 251
           A + A + E I                S G  +++ IARA++ +P + +LDE TS LD  
Sbjct: 117 ATEIAGLGEKIKDRVST---------YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVL 167

Query: 252 SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHKG 310
           +   V+ +L     +     T++V +H +  ++ + DRI +I +G I+E G   EL  + 
Sbjct: 168 NAREVRKILKQASQEG---LTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERY 224

Query: 311 R------LYAKLVK 318
           +      ++ ++VK
Sbjct: 225 KAQNIEEVFEEVVK 238

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score =  141 bits (358), Expect = 2e-41
 Identities = 47/230 (20%), Positives = 99/230 (43%), Gaps = 17/230 (7%)

Query: 84  NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 143
           ++  +Y +   +  +  + L +   ++V ++G +G+GK+T ++ +  L     G+I  +G
Sbjct: 11  SLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNG 67

Query: 144 FPLTDLD--IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEF 201
             +T+    +                 ++ +  N+M G       E I+         E+
Sbjct: 68  QDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDL------EW 121

Query: 202 ILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV 259
           I SL    +  +      LSGG++Q +AI RA++  P +L++DE +  L       V  V
Sbjct: 122 IFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEV 181

Query: 260 LHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLH 308
           +  +    +   T++++         V     V++ G+I+  G  +ELL 
Sbjct: 182 IQKIN---QEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score =  139 bits (352), Expect = 2e-40
 Identities = 69/243 (28%), Positives = 121/243 (49%), Gaps = 22/243 (9%)

Query: 77  MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 136
           M  +   N+S  +  +  V  L++V + IE  E   I+G SG+GK+TF+ ++  L  PS 
Sbjct: 1   MVRIIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPST 59

Query: 137 GQIYIDGFPLTDLDIRWLRE---KIGFVGQEPQLL-QMDIKSNIMYGC-----PKDVKNE 187
           G++Y D   +       +     KIG V Q   L   +    NI +        K+   +
Sbjct: 60  GELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRK 119

Query: 188 DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSA 247
            +E  AK   +H  +   P           LSG Q+QR+A+ARA+++DP++LLLDE  S 
Sbjct: 120 RVEEVAKILDIHHVLNHFPRE---------LSGAQQQRVALARALVKDPSLLLLDEPFSN 170

Query: 248 LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAEL 306
           LD+      + ++  ++   +   T++V++H  + I A+ DR+ V+  G++++VG   +L
Sbjct: 171 LDARMRDSARALVKEVQ--SRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228

Query: 307 LHK 309
              
Sbjct: 229 YDN 231

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score =  135 bits (340), Expect = 8e-39
 Identities = 71/234 (30%), Positives = 122/234 (52%), Gaps = 21/234 (8%)

Query: 80  VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
           ++  ++S  + +      L+++ L +E+ E   I+G +G+GK+ F+ L+   + P  G+I
Sbjct: 2   IEIESLSRKWKNF----SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57

Query: 140 YIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGC--PKDVKNEDIEWAAKQA 196
            +DG  +TDL     +  I FV Q   L   M++K N+ +G    K    + +   A+  
Sbjct: 58  LLDGKDVTDLSPE--KHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL 115

Query: 197 YVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 256
            +   +   P           LSGG++QR+A+ARA++ +P ILLLDE  SALD  ++   
Sbjct: 116 KIEHLLDRNPLT---------LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENA 166

Query: 257 KGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHK 309
           + +L  L    K   TV+ I H  +  + + DRI V+ DG++I+VG   E+  K
Sbjct: 167 REMLSVLHKKNKL--TVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score =  127 bits (321), Expect = 6e-36
 Identities = 59/221 (26%), Positives = 110/221 (49%), Gaps = 17/221 (7%)

Query: 100 HVCLTIEAN-EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158
            + +  E   +   ++G +G+GKS F+ L+  + +P  G++ ++G  +T L     R  I
Sbjct: 15  RLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGI 72

Query: 159 GFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-- 215
           GFV Q+  L   + +  NI YG   +V+  + +   ++       ++   G   L+D   
Sbjct: 73  GFVPQDYALFPHLSVYRNIAYGLR-NVERVERDRRVRE-------MAEKLGIAHLLDRKP 124

Query: 216 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIV 275
             LSGG++QR+A+ARA++  P +LLLDE  SA+D +++  +   L  ++   +    ++ 
Sbjct: 125 ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQ--REFDVPILH 182

Query: 276 IAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHKGRLYAK 315
           + H L     + D + V+ +GRI+E G   EL         
Sbjct: 183 VTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVA 223

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score =  124 bits (312), Expect = 5e-35
 Identities = 46/216 (21%), Positives = 87/216 (40%), Gaps = 28/216 (12%)

Query: 81  QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY 140
           +  ++S  Y      P+L  + +TIE   VV   G +G GK+T +  +    +P  G+I 
Sbjct: 4   EIRDLSVGYDK----PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 59

Query: 141 IDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNIMYG---CPKDVKNEDIEWAAKQA 196
            +G       I  ++ KI F+ +E  + + + ++  +          V   +I  A +  
Sbjct: 60  YNGV-----PITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESV 114

Query: 197 YVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 256
            V +    L            LS G  +R+ +A  +L +  I +LD+   A+D +S+H V
Sbjct: 115 EVLDLKKKLGE----------LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKV 164

Query: 257 KGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 292
              +  +  +      +I     LS     D    +
Sbjct: 165 LKSILEILKEKGI--VIISSREELSY---CDVNENL 195

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

 Score =  101 bits (253), Expect = 7e-27
 Identities = 26/201 (12%), Positives = 46/201 (22%), Gaps = 34/201 (16%)

Query: 111 VAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQM 170
           + I G  G GK+T V  ++          + +     +   R     I   G++      
Sbjct: 3   IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62

Query: 171 DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 230
              S  + G                             Y   V             A   
Sbjct: 63  FFTSKKLVGS----------------------------YGVNVQYFEELAIPILERAYRE 94

Query: 231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIV 290
           A      ++++DE             K      +        V+           V  I 
Sbjct: 95  AKKDRRKVIIIDEIGKMEL----FSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIR 150

Query: 291 VIDDGRIIEVG--NHAELLHK 309
            +    +IE+   N   +L  
Sbjct: 151 RLPGAVLIELTPENRDVILED 171

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 7e-06
 Identities = 25/177 (14%), Positives = 45/177 (25%), Gaps = 13/177 (7%)

Query: 110 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ 169
            V + G  G GK+T ++    + + S   +            R +   +  +      L 
Sbjct: 3   HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLS 62

Query: 170 MDIKSNI-----MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQ 222
                              V     E  A          S   G    V D+   +    
Sbjct: 63  RVGLEPPPGKRECRVGQYVVDLTSFEQLALPVL-RNADCSSGPGQRVCVIDEIGKMELFS 121

Query: 223 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHR 279
           +  I   R  L  P  ++L                 ++  +RN    K   +   +R
Sbjct: 122 QLFIQAVRQTLSTPGTIILGTIPVPKGKPL-----ALVEEIRNRKDVKVFNVTKENR 173

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.5 bits (91), Expect = 2e-04
 Identities = 16/67 (23%), Positives = 20/67 (29%), Gaps = 2/67 (2%)

Query: 109 EVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQ 166
           EVV  VG  G+GKSTF+   L    Y   +                 LR+    V     
Sbjct: 15  EVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRCVSSCQAALRQGKRVVIDNTN 74

Query: 167 LLQMDIK 173
                  
Sbjct: 75  PDVPSRA 81

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.7 bits (91), Expect = 3e-04
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 7/78 (8%)

Query: 219 SGGQKQRIAI----ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 274
           SGG+K   A+    A    +     +LDE  +ALD      V+ +   +R         I
Sbjct: 334 SGGEKTVAALALLFAINSYQPSPFFVLDEVDAALD---ITNVQRIAAYIRRHRNPDLQFI 390

Query: 275 VIAHRLSTIKAVDRIVVI 292
           VI+ + +  +  D +V +
Sbjct: 391 VISLKNTMFEKSDALVGV 408

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 9/44 (20%), Positives = 19/44 (43%)

Query: 110 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW 153
           ++A    SG+GK+T +  L+        +  +      D+D+  
Sbjct: 4   LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDK 47

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

 Score = 35.8 bits (81), Expect = 0.003
 Identities = 8/39 (20%), Positives = 14/39 (35%)

Query: 107 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 145
              ++ + G S +GKS  V  L  +         +D   
Sbjct: 2   TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLI 40

>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323

class: Membrane and cell surface proteins and peptides
fold: ABC transporter transmembrane region
superfamily: ABC transporter transmembrane region
family: ABC transporter transmembrane region
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score = 36.8 bits (83), Expect = 0.003
 Identities = 18/59 (30%), Positives = 32/59 (54%)

Query: 1   MAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLID 59
           + + +G    + G ++   L  +V Y E L     R+V + ++L QS  + ++VFQLID
Sbjct: 261 IVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 20/99 (20%), Positives = 32/99 (32%), Gaps = 4/99 (4%)

Query: 111 VAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQM 170
           VAIVG    GKST  N +L      +  +       T   +       G          +
Sbjct: 11  VAIVGRPNVGKSTLFNAILN----KERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGL 66

Query: 171 DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGY 209
             KS +     +   N  +  + ++A V   +L    G 
Sbjct: 67  RRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGI 105

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	325
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	100.0
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	100.0
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	100.0
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	100.0
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	100.0
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	100.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	100.0
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
d2awna2	232	Maltose transport protein MalK, N-terminal domain	100.0
d1g2912	240	Maltose transport protein MalK, N-terminal domain	100.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	100.0
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	100.0
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	100.0
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	100.0
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	100.0
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	100.0
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	100.0
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	100.0
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.9
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	99.82
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	99.57
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	99.45
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.41
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	99.21
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	98.36
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	98.23
d3b60a2	319	Multidrug resistance ABC transporter MsbA, N-termi	97.97
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.95
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	97.79
d2hyda2	323	Putative multidrug export ATP-binding/permease pro	97.78
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	97.74
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.64
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.63
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.63
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.61
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.55
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	97.47
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.47
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.42
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.4
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.39
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.37
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.29
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.28
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.26
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.25
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.23
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.21
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.2
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.17
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.14
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.12
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	97.05
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.03
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.0
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.97
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.96
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.95
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.89
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.88
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	96.88
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	96.87
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.86
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.84
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	96.84
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	96.83
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.81
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	96.8
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.8
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.79
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	96.79
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.78
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.76
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.75
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.74
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.73
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.72
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	96.7
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.7
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	96.66
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.64
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.63
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.62
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.61
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.58
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.51
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.48
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.48
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.48
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.47
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.47
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.45
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	96.45
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.45
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.39
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.38
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.34
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	96.34
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.33
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.31
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.28
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.24
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.24
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	96.22
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.21
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.19
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.18
d1okkd2	207	GTPase domain of the signal recognition particle r	96.18
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.16
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.15
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.14
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.12
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.11
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.11
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.09
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.08
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.07
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.06
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	95.99
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.98
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	95.97
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	95.95
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.95
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	95.94
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	95.93
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.91
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.9
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	95.89
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.89
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	95.88
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	95.88
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.87
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.86
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.86
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	95.85
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	95.83
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	95.83
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	95.79
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	95.78
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	95.77
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.76
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	95.73
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	95.69
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	95.68
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.68
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	95.67
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	95.66
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	95.66
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	95.65
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	95.62
d1ls1a2	207	GTPase domain of the signal sequence recognition p	95.61
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	95.61
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	95.61
d2qy9a2	211	GTPase domain of the signal recognition particle r	95.59
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	95.57
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	95.53
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	95.51
d1vmaa2	213	GTPase domain of the signal recognition particle r	95.51
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	95.49
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	95.44
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	95.43
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	95.42
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	95.42
d1xpua3	289	Transcription termination factor Rho, ATPase domai	95.41
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	95.41
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	95.41
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	95.41
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.4
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.38
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.32
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.31
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	95.31
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	95.31
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	95.27
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	95.27
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	95.23
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.22
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	95.22
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	95.22
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	95.21
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	95.19
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.17
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	95.16
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	95.13
d1j8yf2	211	GTPase domain of the signal sequence recognition p	95.13
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.07
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.06
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	95.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	95.0
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	94.91
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	94.9
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	94.88
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	94.87
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	94.86
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	94.86
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	94.85
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.79
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	94.78
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	94.75
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	94.74
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	94.71
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	94.59
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	94.57
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	94.51
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	94.46
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	94.39
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	94.39
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	94.29
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	94.17
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	94.12
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	93.86
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	93.85
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	93.84
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	93.83
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	93.55
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	93.51
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	93.45
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	93.44
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	93.36
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	93.28
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	92.89
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	92.86
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	92.81
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	92.73
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	92.62
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	92.42
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	92.26
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	92.16
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	92.07
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	91.88
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	91.64
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	91.29
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	91.07
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	91.05
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	90.83
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	90.73
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	90.64
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	90.59
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	90.53
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	90.44
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	89.99
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	89.75
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	89.61
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	89.06
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	88.58
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	88.39
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	88.26
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	87.36
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	87.25
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	87.11
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	86.82
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	86.76
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	86.02
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	85.61
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	85.56
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	85.44
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	85.39
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	85.27
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	85.0
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	84.88
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	84.86
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	84.39
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	84.14
d1tuea_	205	Replication protein E1 helicase domain {Human papi	84.12
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	83.17
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	82.08
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	80.59
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	80.56

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.6e-68  Score=477.60  Aligned_cols=237  Identities=48%  Similarity=0.736  Sum_probs=220.4

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      |+++||+|+|++. .+++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.|||+++..++..++|++|+
T Consensus         2 I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~   80 (241)
T d2pmka1           2 ITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG   80 (241)
T ss_dssp             EEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred             eEEEEEEEEeCCC-CcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEE
Confidence            7999999999754 356999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCCC
Q 020527          160 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPA  237 (325)
Q Consensus       160 ~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p~  237 (325)
                      ||||+|.+|++||+|||.++. +....+++..+.+.+++.+++..++.++++.++  +.+|||||||||+|||||+++|+
T Consensus        81 ~v~Q~~~lf~~Ti~eNi~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~  159 (241)
T d2pmka1          81 VVLQDNVLLNRSIIDNISLAN-PGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK  159 (241)
T ss_dssp             EECSSCCCTTSBHHHHHCTTS-TTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred             EEecccccCCccccccccccC-ccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccc
Confidence            999999999999999999974 346678888899999999999999999998876  46899999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhc-CHHHHHH
Q 020527          238 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK-GRLYAKL  316 (325)
Q Consensus       238 llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~~~~  316 (325)
                      |||||||||+||+.+++.+++.|+++.+    ++|+|+||||++.++.||||++|++|+|++.|++++++++ +..|.++
T Consensus       160 ililDEpts~LD~~~~~~i~~~l~~l~~----~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l  235 (241)
T d2pmka1         160 ILIFDEATSALDYESEHVIMRNMHKICK----GRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL  235 (241)
T ss_dssp             EEEECCCCSCCCHHHHHHHHHHHHHHHT----TSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHH
T ss_pred             hhhhhCCccccCHHHHHHHHHHHHHHhC----CCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHH
Confidence            9999999999999999999999999863    7899999999999988999999999999999999999986 5689999


Q ss_pred             HHHhhh
Q 020527          317 VKRQTE  322 (325)
Q Consensus       317 ~~~~~~  322 (325)
                      |+.|.+
T Consensus       236 ~~~Q~d  241 (241)
T d2pmka1         236 YQLQSD  241 (241)
T ss_dssp             HHHHCC
T ss_pred             HHHhcC
Confidence            988753

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-68  Score=481.28  Aligned_cols=240  Identities=42%  Similarity=0.699  Sum_probs=221.6

Q ss_pred             cccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhc
Q 020527           77 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE  156 (325)
Q Consensus        77 ~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~  156 (325)
                      .+.|+++||+|+|+++.+..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|++||+++..++...+|+
T Consensus         9 ~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~   88 (251)
T d1jj7a_           9 EGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHR   88 (251)
T ss_dssp             CCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred             cceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHH
Confidence            34699999999998654557999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcC
Q 020527          157 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILR  234 (325)
Q Consensus       157 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~  234 (325)
                      +|+||||+|.+|+.||+||+.++............+.+..++.++++.++.++++.++  +.+|||||||||+|||||++
T Consensus        89 ~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~  168 (251)
T d1jj7a_          89 QVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIR  168 (251)
T ss_dssp             HEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTT
T ss_pred             HhhhccccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeecccc
Confidence            9999999999999999999999865555667777788888899999999999988876  46899999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHH
Q 020527          235 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYA  314 (325)
Q Consensus       235 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~  314 (325)
                      +|+|||||||||+||+.++..+++.|.++.++  .++|+|+||||++.++.||||++|++|+|++.|+|++++++++.|+
T Consensus       169 ~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~--~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~~~~y~  246 (251)
T d1jj7a_         169 KPCVLILDDATSALDANSQLQVEQLLYESPER--YSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYW  246 (251)
T ss_dssp             CCSEEEEESTTTTCCHHHHHHHHHHHHTCGGG--GGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHH
T ss_pred             CCcEEEecCcCcccChhhHHHHHHHHHHHhhh--cCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHH
Confidence            99999999999999999999999999998653  4789999999999988899999999999999999999999999999


Q ss_pred             HHHH
Q 020527          315 KLVK  318 (325)
Q Consensus       315 ~~~~  318 (325)
                      ++++
T Consensus       247 ~l~~  250 (251)
T d1jj7a_         247 AMVQ  250 (251)
T ss_dssp             HHHC
T ss_pred             HHhc
Confidence            8875

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=5.5e-68  Score=479.18  Aligned_cols=240  Identities=47%  Similarity=0.747  Sum_probs=225.0

Q ss_pred             cccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhc
Q 020527           77 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE  156 (325)
Q Consensus        77 ~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~  156 (325)
                      .+.|+++||+|+|+++ +.++|+||||+|++||++||+||||||||||+++|+|+++|++|+|++||+++..++...+|+
T Consensus        11 ~g~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~   89 (253)
T d3b60a1          11 TGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN   89 (253)
T ss_dssp             CCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred             ceEEEEEEEEEEeCCC-CCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhh
Confidence            3569999999999864 357999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcC
Q 020527          157 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILR  234 (325)
Q Consensus       157 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~  234 (325)
                      +|+|+||++.+|+.|+++|+.++......++++.++++.+++.++++.+|.|+++.++  +.+|||||||||+|||||++
T Consensus        90 ~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~  169 (253)
T d3b60a1          90 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR  169 (253)
T ss_dssp             TEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred             eEEEEeeccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhc
Confidence            9999999999999999999999865556788889999999999999999999998886  36899999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHH
Q 020527          235 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYA  314 (325)
Q Consensus       235 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~  314 (325)
                      +|+|||||||||+||+.++..+++.|+++.+    ++|+|+||||++.+..||||++|++|+|++.|+|++++++++.|+
T Consensus       170 ~p~ililDEpts~LD~~~~~~i~~~l~~l~~----~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~~~~y~  245 (253)
T d3b60a1         170 DSPILILDEATSALDTESERAIQAALDELQK----NRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYA  245 (253)
T ss_dssp             CCSEEEEETTTSSCCHHHHHHHHHHHHHHHT----TSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHH
T ss_pred             CCCEEEeccccccCCHHHHHHHHHHHHHhcc----CCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHH
Confidence            9999999999999999999999999999863    789999999999988899999999999999999999999999999


Q ss_pred             HHHHHhh
Q 020527          315 KLVKRQT  321 (325)
Q Consensus       315 ~~~~~~~  321 (325)
                      ++|+.|.
T Consensus       246 ~l~~~Q~  252 (253)
T d3b60a1         246 QLHKMQF  252 (253)
T ss_dssp             HHHHHTC
T ss_pred             HHHHHcc
Confidence            9999875

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=5.7e-68  Score=478.80  Aligned_cols=238  Identities=47%  Similarity=0.751  Sum_probs=222.9

Q ss_pred             cccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhc
Q 020527           77 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE  156 (325)
Q Consensus        77 ~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~  156 (325)
                      .+.|+++||+|+|+++ ..++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..++...+|+
T Consensus        14 ~g~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~   92 (255)
T d2hyda1          14 QGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRN   92 (255)
T ss_dssp             SCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred             CCEEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhh
Confidence            3569999999999864 357999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcC
Q 020527          157 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILR  234 (325)
Q Consensus       157 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~  234 (325)
                      +|+||||++.+|++||+|||.++.+ ...++++.++++.+++.+++..+|.++++.++.  .+||||||||++|||||++
T Consensus        93 ~i~~v~Q~~~lf~~Ti~eNi~~g~~-~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~  171 (255)
T d2hyda1          93 QIGLVQQDNILFSDTVKENILLGRP-TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN  171 (255)
T ss_dssp             TEEEECSSCCCCSSBHHHHHGGGCS-SCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred             eeeeeeccccCCCCCHHHHHhccCc-CCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhc
Confidence            9999999999999999999999853 456788899999999999999999999998874  6899999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHH
Q 020527          235 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYA  314 (325)
Q Consensus       235 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~  314 (325)
                      +|+|||||||||+||+.++..+++.|.++.    +++|+|+||||++.+..||||++|++|+|++.|++++++++++.|+
T Consensus       172 ~p~ililDEpts~LD~~t~~~i~~~l~~l~----~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~~~~y~  247 (255)
T d2hyda1         172 NPPILILDEATSALDLESESIIQEALDVLS----KDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYE  247 (255)
T ss_dssp             CCSEEEEESTTTTCCHHHHHHHHHHHHHHT----TTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHH
T ss_pred             CCCEEEEeCccccCCHHHHHHHHHHHHHHh----cCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHH
Confidence            999999999999999999999999999885    3689999999999998899999999999999999999999999999


Q ss_pred             HHHHHh
Q 020527          315 KLVKRQ  320 (325)
Q Consensus       315 ~~~~~~  320 (325)
                      ++|+.|
T Consensus       248 ~l~~~Q  253 (255)
T d2hyda1         248 HLYSIQ  253 (255)
T ss_dssp             HHHTTT
T ss_pred             HHHHHc
Confidence            999865

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=1.5e-68  Score=479.82  Aligned_cols=237  Identities=41%  Similarity=0.664  Sum_probs=219.3

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      +|+++||+|+|++.  +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++..++...+|++|
T Consensus         1 mle~knvsf~Y~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i   78 (242)
T d1mv5a_           1 MLSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQI   78 (242)
T ss_dssp             CEEEEEEEECSSSS--SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTC
T ss_pred             CEEEEEEEEECCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhhe
Confidence            38999999999753  4699999999999999999999999999999999999999999999999999998888899999


Q ss_pred             EEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCC
Q 020527          159 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDP  236 (325)
Q Consensus       159 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p  236 (325)
                      |||||+|.+|++||+||+.++.......+.+..+.+.+.+.+++..++.++++.++.  .+|||||||||+|||||+++|
T Consensus        79 ~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p  158 (242)
T d1mv5a_          79 GFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNP  158 (242)
T ss_dssp             CEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred             EEEccccccCCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCC
Confidence            999999999999999999987555566777788888888888888888888887763  579999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHH
Q 020527          237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKL  316 (325)
Q Consensus       237 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~  316 (325)
                      +|||||||||+||+.++..+++.|+++.    +|+|+|+||||++.+..||||++|++|+|++.|++++++++++.|+++
T Consensus       159 ~ililDEpts~LD~~~~~~i~~~l~~l~----~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~~~~y~~l  234 (242)
T d1mv5a_         159 KILMLDEATASLDSESESMVQKALDSLM----KGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKY  234 (242)
T ss_dssp             SEEEEECCSCSSCSSSCCHHHHHHHHHH----TTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHH
T ss_pred             CEEEecCCccccCHHHHHHHHHHHHHHc----CCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCChHHHHH
Confidence            9999999999999999999999999986    378999999999999889999999999999999999999999999999


Q ss_pred             HHHhh
Q 020527          317 VKRQT  321 (325)
Q Consensus       317 ~~~~~  321 (325)
                      ++.|.
T Consensus       235 ~~~Q~  239 (242)
T d1mv5a_         235 VSEQL  239 (242)
T ss_dssp             HHCCC
T ss_pred             HHHHh
Confidence            98875

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=1.6e-64  Score=450.54  Aligned_cols=218  Identities=29%  Similarity=0.494  Sum_probs=183.7

Q ss_pred             cccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhc
Q 020527           77 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE  156 (325)
Q Consensus        77 ~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~  156 (325)
                      |..|+++||+|+|++   ..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+..  ++
T Consensus         4 M~~I~v~nlsk~yg~---~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r   78 (239)
T d1v43a3           4 MVEVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DR   78 (239)
T ss_dssp             CCCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GG
T ss_pred             cCeEEEEEEEEEECC---EEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcc--cc
Confidence            567999999999975   4699999999999999999999999999999999999999999999999999877654  56


Q ss_pred             ceEEEccCCcCc-cccHHHHHhcCCCC-CCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527          157 KIGFVGQEPQLL-QMDIKSNIMYGCPK-DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR  230 (325)
Q Consensus       157 ~i~~v~Q~~~l~-~~tv~enl~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr  230 (325)
                      +||||||++.+| .+||+||+.++... ....    +++.++++.++++++.++.         +.+|||||||||+|||
T Consensus        79 ~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LSGGq~QRvaiAr  149 (239)
T d1v43a3          79 NISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRY---------PAQLSGGQRQRVAVAR  149 (239)
T ss_dssp             TEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSC---------TTTCCSSCHHHHHHHH
T ss_pred             eEEEEeechhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCC---------hhhCCHHHHHHHHHHh
Confidence            899999999999 58999999987432 2222    2233344444444443333         3689999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhc
Q 020527          231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK  309 (325)
Q Consensus       231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~  309 (325)
                      ||+.+|+||||||||++|||.++.++++++++++++  .|+|+|+||||++++.. ||||++|++|+|++.|+|++++++
T Consensus       150 aL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~--~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~  227 (239)
T d1v43a3         150 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQK--LKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR  227 (239)
T ss_dssp             HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred             hhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            999999999999999999999999999999999764  48999999999999865 999999999999999999999876


Q ss_pred             C
Q 020527          310 G  310 (325)
Q Consensus       310 ~  310 (325)
                      .
T Consensus       228 P  228 (239)
T d1v43a3         228 P  228 (239)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=1e-64  Score=452.19  Aligned_cols=222  Identities=31%  Similarity=0.476  Sum_probs=189.0

Q ss_pred             cccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCC---HHH
Q 020527           77 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD---IRW  153 (325)
Q Consensus        77 ~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~---~~~  153 (325)
                      |..|+++||+|+|+.. +..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+   ...
T Consensus         1 M~~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~   79 (242)
T d1oxxk2           1 MVRIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP   79 (242)
T ss_dssp             CCCEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG
T ss_pred             CCEEEEEeEEEEECCC-CEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcch
Confidence            4569999999999643 357999999999999999999999999999999999999999999999999986544   234


Q ss_pred             HhcceEEEccCCcCc-cccHHHHHhcCCCC-CCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 020527          154 LREKIGFVGQEPQLL-QMDIKSNIMYGCPK-DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA  227 (325)
Q Consensus       154 ~r~~i~~v~Q~~~l~-~~tv~enl~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~  227 (325)
                      +|++||||||++.+| .+||+|||.++... ....    +++.++++.+++.++.++.|         .+|||||||||+
T Consensus        80 ~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p---------~~LSGGqkQRva  150 (242)
T d1oxxk2          80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP---------RELSGAQQQRVA  150 (242)
T ss_dssp             GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG---------GGSCHHHHHHHH
T ss_pred             hhccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCCh---------hhCCHHHHhHHH
Confidence            577899999999999 57999999987432 2222    23444555555544444333         679999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHH
Q 020527          228 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL  306 (325)
Q Consensus       228 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l  306 (325)
                      |||||+.+|++|||||||++||+.++.++++.+++++++  .|+|+|+||||++++.. ||||++|++|+|++.|+|+++
T Consensus       151 iARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~--~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el  228 (242)
T d1oxxk2         151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSR--LGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL  228 (242)
T ss_dssp             HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHH--HCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred             HHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhc--cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            999999999999999999999999999999999999764  48999999999999855 999999999999999999999


Q ss_pred             hhcC
Q 020527          307 LHKG  310 (325)
Q Consensus       307 ~~~~  310 (325)
                      ++++
T Consensus       229 ~~~P  232 (242)
T d1oxxk2         229 YDNP  232 (242)
T ss_dssp             HHSC
T ss_pred             HhCC
Confidence            8763

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=100.00  E-value=5.9e-64  Score=444.14  Aligned_cols=213  Identities=33%  Similarity=0.563  Sum_probs=187.7

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      |+++||+|+|++    .+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+..  |++||
T Consensus         2 i~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig   75 (229)
T d3d31a2           2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIA   75 (229)
T ss_dssp             EEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCE
T ss_pred             EEEEEEEEEeCC----EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchh--Hhcce
Confidence            899999999964    389999999999999999999999999999999999999999999999999876654  67899


Q ss_pred             EEccCCcCc-cccHHHHHhcCCC--CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 020527          160 FVGQEPQLL-QMDIKSNIMYGCP--KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP  236 (325)
Q Consensus       160 ~v~Q~~~l~-~~tv~enl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p  236 (325)
                      ||||++.+| .+||+||+.++..  .....+++.++++..++.++.++.+         .+|||||||||+|||||+.+|
T Consensus        76 ~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSGG~~QRvaiAraL~~~P  146 (229)
T d3d31a2          76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP---------LTLSGGEQQRVALARALVTNP  146 (229)
T ss_dssp             EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCG---------GGSCHHHHHHHHHHHHTTSCC
T ss_pred             eeccccccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHhCCh---------hhCCHHHhcchhhhhhhhccC
Confidence            999999999 5899999987631  1223455666666666555444433         679999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhc
Q 020527          237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK  309 (325)
Q Consensus       237 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~  309 (325)
                      ++|||||||++|||.++..+++.+++++++  .|.|||+||||++++.. ||||++|++|+|++.|+|++++++
T Consensus       147 ~iLllDEPts~LD~~~~~~i~~~l~~l~~~--~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~  218 (229)
T d3d31a2         147 KILLLDEPLSALDPRTQENAREMLSVLHKK--NKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK  218 (229)
T ss_dssp             SEEEEESSSTTSCHHHHHHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS
T ss_pred             CceeecCCCcCCCHHHHHHHHHHHHHHHhc--CCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            999999999999999999999999999764  58999999999999865 999999999999999999999875

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.6e-64  Score=445.97  Aligned_cols=214  Identities=30%  Similarity=0.481  Sum_probs=161.0

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      |+++||+|+|++   ..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+..  +++||
T Consensus         1 Iev~nv~k~yg~---~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig   75 (232)
T d2awna2           1 VQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVG   75 (232)
T ss_dssp             EEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGG--GTCEE
T ss_pred             CEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchh--hceee
Confidence            689999999975   4699999999999999999999999999999999999999999999999999876543  57899


Q ss_pred             EEccCCcCc-cccHHHHHhcCCCCC-----CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 020527          160 FVGQEPQLL-QMDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL  233 (325)
Q Consensus       160 ~v~Q~~~l~-~~tv~enl~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~  233 (325)
                      ||||++.+| .+||+||+.++....     ..++++.++++.+++.++.++.+         .+|||||||||+|||||+
T Consensus        76 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~---------~~LSGGqkQRvaiAraL~  146 (232)
T d2awna2          76 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP---------KALSGGQRQRVAIGRTLV  146 (232)
T ss_dssp             EECSSCCC---------------------CHHHHHHHHHHHHC------------------------------CHHHHHH
T ss_pred             eeccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCCh---------hhCCHHHHHHHHHHHHHh
Confidence            999999998 689999999874211     11244566677777766666655         679999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhc
Q 020527          234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK  309 (325)
Q Consensus       234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~  309 (325)
                      .+|++|||||||++||+.++..+++.|+++.++  .|+|+|+||||++++.. ||||++|++|+|++.|+|++++++
T Consensus       147 ~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~--~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~  221 (232)
T d2awna2         147 AEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR--LGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY  221 (232)
T ss_dssp             TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH--SCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             cCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhC
Confidence            999999999999999999999999999999764  58999999999999865 999999999999999999999876

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=5.1e-64  Score=447.84  Aligned_cols=219  Identities=30%  Similarity=0.448  Sum_probs=187.4

Q ss_pred             cccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHH----
Q 020527           77 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR----  152 (325)
Q Consensus        77 ~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~----  152 (325)
                      |..|+++||+|+|++   .++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+..    
T Consensus         1 M~~i~v~nl~k~yg~---~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~   77 (240)
T d1g2912           1 MAGVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVP   77 (240)
T ss_dssp             CEEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECC
T ss_pred             CCcEEEEeEEEEECC---EEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcc
Confidence            456999999999975   3699999999999999999999999999999999999999999999999998654432    


Q ss_pred             HHhcceEEEccCCcCc-cccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHH
Q 020527          153 WLREKIGFVGQEPQLL-QMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI  226 (325)
Q Consensus       153 ~~r~~i~~v~Q~~~l~-~~tv~enl~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv  226 (325)
                      ..|++||||||++.+| .+||+||+.++.. .....    +++.+.++.+++.++.++.|         .+|||||||||
T Consensus        78 ~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p---------~~LSGGqkQRv  148 (240)
T d1g2912          78 PKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP---------RELSGGQRQRV  148 (240)
T ss_dssp             GGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG---------GGSCHHHHHHH
T ss_pred             cccccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCh---------hhCCHHHHHHH
Confidence            2367899999999999 5799999987631 11222    23445555555544444333         67999999999


Q ss_pred             HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHH
Q 020527          227 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAE  305 (325)
Q Consensus       227 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~  305 (325)
                      +|||||+.+|++|||||||++||+.++..+++.|++++++  .|.|||+||||++++.. ||||++|++|+|++.|+|++
T Consensus       149 ~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~--~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~e  226 (240)
T d1g2912         149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQ--LGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDE  226 (240)
T ss_dssp             HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             HHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhc--cCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            9999999999999999999999999999999999999764  48999999999999865 99999999999999999999


Q ss_pred             Hhhc
Q 020527          306 LLHK  309 (325)
Q Consensus       306 l~~~  309 (325)
                      ++++
T Consensus       227 l~~~  230 (240)
T d1g2912         227 VYDK  230 (240)
T ss_dssp             HHHS
T ss_pred             HHhC
Confidence            9875

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.1e-63  Score=443.90  Aligned_cols=220  Identities=32%  Similarity=0.483  Sum_probs=189.6

Q ss_pred             cEEEEEEEEECCCCCC-CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHH---HH
Q 020527           79 HVQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WL  154 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~-~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~---~~  154 (325)
                      +|+++||+|+|+.+.. ..||+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.+   .+
T Consensus         1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~   80 (240)
T d3dhwc1           1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA   80 (240)
T ss_dssp             CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHH
T ss_pred             CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhh
Confidence            3899999999975421 2589999999999999999999999999999999999999999999999999887754   35


Q ss_pred             hcceEEEccCCcCc-cccHHHHHhcCC-----CCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 020527          155 REKIGFVGQEPQLL-QMDIKSNIMYGC-----PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI  228 (325)
Q Consensus       155 r~~i~~v~Q~~~l~-~~tv~enl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i  228 (325)
                      |++||||||++.+| +.||+||+.++.     +.....+++.++++.+++.+..++.|         .+|||||||||+|
T Consensus        81 rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~---------~~LSGG~~QRvai  151 (240)
T d3dhwc1          81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP---------SNLSGGQKQRVAI  151 (240)
T ss_dssp             HHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCB---------SCCCHHHHHHHHH
T ss_pred             hccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHHH
Confidence            67899999999998 579999998752     11111344556666666655444433         6799999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHh
Q 020527          229 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL  307 (325)
Q Consensus       229 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~  307 (325)
                      ||||+.+|++|||||||++||+.++..+++.|++++++  .|+|+|+||||++++.. ||||++|++|+|++.|++++++
T Consensus       152 AraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~--~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~  229 (240)
T d3dhwc1         152 ARALASNPKVLLCDEATSALDPATTRSILELLKDINRR--LGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVF  229 (240)
T ss_dssp             HHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHH--HCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTT
T ss_pred             hhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhc--cCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            99999999999999999999999999999999999764  48999999999999875 9999999999999999999998


Q ss_pred             hc
Q 020527          308 HK  309 (325)
Q Consensus       308 ~~  309 (325)
                      ++
T Consensus       230 ~~  231 (240)
T d3dhwc1         230 SH  231 (240)
T ss_dssp             CS
T ss_pred             hC
Confidence            65

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=1.4e-62  Score=436.14  Aligned_cols=218  Identities=32%  Similarity=0.475  Sum_probs=178.5

Q ss_pred             cEEEEEEEEECCCCC-CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHH---
Q 020527           79 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL---  154 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~-~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~---  154 (325)
                      +|+++||+|+|+... ...+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..++.+++   
T Consensus         1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~   80 (230)
T d1l2ta_           1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI   80 (230)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred             CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchh
Confidence            389999999997532 1248999999999999999999999999999999999999999999999999998876543   


Q ss_pred             -hcceEEEccCCcCc-cccHHHHHhcCCC----CCCCHHHHHHHHHHcCHHHHHHhCCCCcc-cccCCCCCChHHHHHHH
Q 020527          155 -REKIGFVGQEPQLL-QMDIKSNIMYGCP----KDVKNEDIEWAAKQAYVHEFILSLPCGYE-TLVDDDLLSGGQKQRIA  227 (325)
Q Consensus       155 -r~~i~~v~Q~~~l~-~~tv~enl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~LSgGq~QRv~  227 (325)
                       |++||||||++.++ ..||+||+.++..    .....++..+     .+.+.++....... ....+.+|||||||||+
T Consensus        81 r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRva  155 (230)
T d1l2ta_          81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRK-----RALECLKMAELEERFANHKPNQLSGGQQQRVA  155 (230)
T ss_dssp             HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHH-----HHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHH
T ss_pred             hcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHH-----HHHHHHHhhchhhhhhcCChhhCCHHHHHHHH
Confidence             45799999999988 5899999987521    1122221111     12233333332211 12234679999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcCh
Q 020527          228 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNH  303 (325)
Q Consensus       228 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~  303 (325)
                      |||||+.+|++|||||||++||+.++..++++|+++.++  .|+|+|+||||+++++.||||++|++|+|+++|++
T Consensus       156 IAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~--~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~  229 (230)
T d1l2ta_         156 IARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEE--DGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL  229 (230)
T ss_dssp             HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT--TCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred             HHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHh--hCCEEEEECCCHHHHHhCCEEEEEECCEEEEeccC
Confidence            999999999999999999999999999999999999764  58999999999998877999999999999999864

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=4.6e-61  Score=434.48  Aligned_cols=226  Identities=29%  Similarity=0.451  Sum_probs=188.2

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCC--------
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD--------  150 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~--------  150 (325)
                      .|+++||+|+|++   .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++...+        
T Consensus         2 ~Lev~nl~k~yg~---~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~   78 (258)
T d1b0ua_           2 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV   78 (258)
T ss_dssp             CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred             eEEEEEEEEEECC---EEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhccc
Confidence            4899999999975   36999999999999999999999999999999999999999999999999986432        


Q ss_pred             -----HHHHhcceEEEccCCcCc-cccHHHHHhcCC--CCCCCH----HHHHHHHHHcCHHHH-HHhCCCCcccccCCCC
Q 020527          151 -----IRWLREKIGFVGQEPQLL-QMDIKSNIMYGC--PKDVKN----EDIEWAAKQAYVHEF-ILSLPCGYETLVDDDL  217 (325)
Q Consensus       151 -----~~~~r~~i~~v~Q~~~l~-~~tv~enl~~~~--~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  217 (325)
                           ...+|++||||||++.+| .+||+||+.++.  ......    +++.++++.+++.+. .++.|         .+
T Consensus        79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p---------~~  149 (258)
T d1b0ua_          79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP---------VH  149 (258)
T ss_dssp             SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG---------GG
T ss_pred             ccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCc---------cc
Confidence                 134678899999999998 589999998652  111222    234445555555432 23333         57


Q ss_pred             CChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCE
Q 020527          218 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR  296 (325)
Q Consensus       218 LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~  296 (325)
                      |||||||||+|||||+.+|++|||||||+|||+.++.+++++|+++++   +|+|||+||||++++.. ||||++|++|+
T Consensus       150 LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~---~g~til~vtHdl~~~~~~adri~vm~~G~  226 (258)
T d1b0ua_         150 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE---EGKTMVVVTHEMGFARHVSSHVIFLHQGK  226 (258)
T ss_dssp             SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH---TTCCEEEECSCHHHHHHHCSEEEEEETTE
T ss_pred             ccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcc---cCCceEEEeCCHHHHHHhCCEEEEEECCE
Confidence            999999999999999999999999999999999999999999999975   38999999999999865 99999999999


Q ss_pred             EEEEcChHHHhhc-CHHH-HHHHHH
Q 020527          297 IIEVGNHAELLHK-GRLY-AKLVKR  319 (325)
Q Consensus       297 i~~~g~~~~l~~~-~~~~-~~~~~~  319 (325)
                      |++.|+|++++++ ...| ++++..
T Consensus       227 iv~~g~~~ev~~~P~~~~~~~ll~~  251 (258)
T d1b0ua_         227 IEEEGDPEQVFGNPQSPRLQQFLKG  251 (258)
T ss_dssp             EEEEECHHHHHHSCCSHHHHHHHHH
T ss_pred             EEEEcCHHHHHhCCCCHHHHHHHhC
Confidence            9999999999876 3333 445543

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=100.00  E-value=1.3e-60  Score=427.58  Aligned_cols=218  Identities=22%  Similarity=0.388  Sum_probs=183.5

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHH-hcc
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REK  157 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~-r~~  157 (325)
                      .|+++||+|+|++   ..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.... |..
T Consensus         6 ~Lev~~l~k~yg~---~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g   82 (240)
T d1ji0a_           6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG   82 (240)
T ss_dssp             EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred             EEEEeeEEEEECC---EEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhc
Confidence            5999999999975   369999999999999999999999999999999999999999999999999988776554 456


Q ss_pred             eEEEccCCcCc-cccHHHHHhcCCCCCCCHHH----HHHHHHHc-CHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 020527          158 IGFVGQEPQLL-QMDIKSNIMYGCPKDVKNED----IEWAAKQA-YVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA  231 (325)
Q Consensus       158 i~~v~Q~~~l~-~~tv~enl~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra  231 (325)
                      |+|+||++.+| .+||+||+.++.......+.    +.++.+.. ++.+..++         ...+|||||||||+||||
T Consensus        83 i~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~LSGG~~Qrv~iAra  153 (240)
T d1ji0a_          83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQ---------LGGTLSGGEQQMLAIGRA  153 (240)
T ss_dssp             EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTS---------BSSSSCHHHHHHHHHHHH
T ss_pred             ccccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhC---------chhhCCHHHHHHHHHHHH
Confidence            99999999999 58999999876422222222    22222221 22222222         236799999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhcC
Q 020527          232 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG  310 (325)
Q Consensus       232 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~  310 (325)
                      |+.+|++|||||||+||||.++.+++++++++++   +|+|||++|||++++.. ||||++|++|++++.|+++++++++
T Consensus       154 L~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~---~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~  230 (240)
T d1ji0a_         154 LMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ---EGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNE  230 (240)
T ss_dssp             HTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH---TTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTCH
T ss_pred             HHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcCH
Confidence            9999999999999999999999999999999975   38999999999999865 9999999999999999999998764


Q ss_pred             H
Q 020527          311 R  311 (325)
Q Consensus       311 ~  311 (325)
                      .
T Consensus       231 ~  231 (240)
T d1ji0a_         231 M  231 (240)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=2.8e-60  Score=429.26  Aligned_cols=221  Identities=25%  Similarity=0.374  Sum_probs=183.8

Q ss_pred             cccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHh-
Q 020527           77 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR-  155 (325)
Q Consensus        77 ~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r-  155 (325)
                      |..|+++||+|+|++   .++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++...++.+.+ 
T Consensus         2 M~iL~v~nlsk~yg~---~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~   78 (254)
T d1g6ha_           2 MEILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH   78 (254)
T ss_dssp             CEEEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred             cceEEEEEEEEEECC---eEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHH
Confidence            567999999999975   3699999999999999999999999999999999999999999999999999988876654 


Q ss_pred             cceEEEccCCcCc-cccHHHHHhcCCCCC--------------CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCCh
Q 020527          156 EKIGFVGQEPQLL-QMDIKSNIMYGCPKD--------------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSG  220 (325)
Q Consensus       156 ~~i~~v~Q~~~l~-~~tv~enl~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSg  220 (325)
                      ..|+|+||++.+| .+||+||+.++....              ...+..     ...+.++++.+...........+|||
T Consensus        79 ~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSg  153 (254)
T d1g6ha_          79 YGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEM-----VEKAFKILEFLKLSHLYDRKAGELSG  153 (254)
T ss_dssp             HTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHH-----HHHHHHHHHHTTCGGGTTSBGGGSCH
T ss_pred             hcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHH-----HHHHHHHHHhcCcchhccCchhhCCc
Confidence            4699999999988 689999998763111              011111     01122334433322222222467999


Q ss_pred             HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEE
Q 020527          221 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIE  299 (325)
Q Consensus       221 Gq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~  299 (325)
                      ||||||+|||||+.+|++|||||||+|||+.++..+++.++++++   +|+|||+||||++++. .||||++|++|+|++
T Consensus       154 G~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~---~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~  230 (254)
T d1g6ha_         154 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA---KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA  230 (254)
T ss_dssp             HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECSCCSTTGGGCSEEEEEETTEEEE
T ss_pred             HHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEE
Confidence            999999999999999999999999999999999999999999965   4899999999999985 599999999999999


Q ss_pred             EcChHHHhh
Q 020527          300 VGNHAELLH  308 (325)
Q Consensus       300 ~g~~~~l~~  308 (325)
                      +|++++++.
T Consensus       231 ~g~~~e~~~  239 (254)
T d1g6ha_         231 EGRGEEEIK  239 (254)
T ss_dssp             EEESHHHHH
T ss_pred             EecHHHHhh
Confidence            999998654

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=7.7e-59  Score=415.39  Aligned_cols=215  Identities=26%  Similarity=0.391  Sum_probs=182.1

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .|+++||+|+|+++   +||+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++... ....|+.+
T Consensus         2 aI~v~nl~k~yg~~---~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~-~~~~~~~i   77 (238)
T d1vpla_           2 AVVVKDLRKRIGKK---EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE-PHEVRKLI   77 (238)
T ss_dssp             CEEEEEEEEEETTE---EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC-HHHHHTTE
T ss_pred             CEEEEeEEEEECCE---EEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccC-hHHHHhhE
Confidence            48999999999753   699999999999999999999999999999999999999999999999998764 55678899


Q ss_pred             EEEccCCcCc-cccHHHHHhcCCC-CCCCHHHH----HHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 020527          159 GFVGQEPQLL-QMDIKSNIMYGCP-KDVKNEDI----EWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI  232 (325)
Q Consensus       159 ~~v~Q~~~l~-~~tv~enl~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral  232 (325)
                      ||+||++.+| .+|+.||+.+... ......+.    ...++..++.+..++         ...+||||||||++|||||
T Consensus        78 ~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~lSgG~~qrv~iA~al  148 (238)
T d1vpla_          78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKD---------RVSTYSKGMVRKLLIARAL  148 (238)
T ss_dssp             EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGS---------BGGGCCHHHHHHHHHHHHH
T ss_pred             eEeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhh---------hhhhCCHHHHHHHHHHHHH
Confidence            9999999888 6899999965311 11222222    223333333322222         2357999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhc
Q 020527          233 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK  309 (325)
Q Consensus       233 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~  309 (325)
                      +.+|++|||||||+||||.++.++.++++++++   +|+|||++|||++++.. ||||++|++|+|++.|+|+++..+
T Consensus       149 ~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~---~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~  223 (238)
T d1vpla_         149 MVNPRLAILDEPTSGLDVLNAREVRKILKQASQ---EGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER  223 (238)
T ss_dssp             TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred             hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence            999999999999999999999999999999975   48999999999999975 999999999999999999999753

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=6e-59  Score=413.89  Aligned_cols=214  Identities=28%  Similarity=0.452  Sum_probs=178.1

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      |++ ++.++|+..    -+ ||||+++ +|+++|+||||||||||+|+|+|+++|++|+|.++|+++...++.  |++||
T Consensus         3 l~v-~~~k~~g~~----~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig   73 (240)
T d2onka1           3 LKV-RAEKRLGNF----RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIG   73 (240)
T ss_dssp             EEE-EEEEEETTE----EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCB
T ss_pred             EEE-EEEEEECCE----EE-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHH--HcCce
Confidence            677 678999752    23 8999995 689999999999999999999999999999999999999877643  67899


Q ss_pred             EEccCCcCcc-ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCE
Q 020527          160 FVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI  238 (325)
Q Consensus       160 ~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~l  238 (325)
                      ||||++.+|+ +||+||+.|+.. .....+..+     .+.++++.+.........+.+|||||||||+|||||+.+|++
T Consensus        74 ~v~Q~~~l~~~ltV~enl~~~l~-~~~~~~~~~-----~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~i  147 (240)
T d2onka1          74 FVPQDYALFPHLSVYRNIAYGLR-NVERVERDR-----RVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRL  147 (240)
T ss_dssp             CCCSSCCCCTTSCHHHHHHTTCT-TSCHHHHHH-----HHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSS
T ss_pred             eeccchhhcccchhhHhhhhhhc-ccCHHHHHH-----HHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCc
Confidence            9999999994 899999999853 233222111     123444444332222233468999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhcC
Q 020527          239 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG  310 (325)
Q Consensus       239 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~  310 (325)
                      |||||||++||+.++..+++.++++.++  .|+|+|+||||++++.. ||||++|++|++++.|+++++++++
T Consensus       148 lllDEPts~LD~~~~~~i~~~i~~l~~~--~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~  218 (240)
T d2onka1         148 LLLDEPLSAVDLKTKGVLMEELRFVQRE--FDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK  218 (240)
T ss_dssp             BEEESTTSSCCHHHHHHHHHHHHHHHHH--HTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred             eEecCccccCCHHHHHHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhcCC
Confidence            9999999999999999999999999764  48899999999999865 9999999999999999999998754

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.7e-56  Score=408.26  Aligned_cols=215  Identities=27%  Similarity=0.426  Sum_probs=185.8

Q ss_pred             EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527           80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus        80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      |.++|+++  .+   .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|             +|+
T Consensus        39 i~~~~~~~--~g---~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~i~  100 (281)
T d1r0wa_          39 VSFSHLCL--VG---NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVS  100 (281)
T ss_dssp             -CHHHHHH--TT---CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------CEE
T ss_pred             EEEEEcCC--CC---CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC-------------EEE
Confidence            55555543  32   3699999999999999999999999999999999999999999999988             499


Q ss_pred             EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCCC
Q 020527          160 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPA  237 (325)
Q Consensus       160 ~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p~  237 (325)
                      |+||++.+|+.||+||+.++.  .........+.+.+.+...+..++.++++.++  +.+|||||||||+|||||+++|+
T Consensus       101 ~v~Q~~~l~~~tv~eni~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~  178 (281)
T d1r0wa_         101 FCSQFSWIMPGTIKENIIFGV--SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDAD  178 (281)
T ss_dssp             EECSSCCCCSEEHHHHHTTTS--CCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCS
T ss_pred             EEeccccccCceeeccccccc--cccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCcc
Confidence            999999999999999999974  34466677788888888888888888877665  35799999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHH
Q 020527          238 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV  317 (325)
Q Consensus       238 llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~  317 (325)
                      |||||||||+||+.++..+++.+....   ..++|+|+|||+++.++.||||++|++|+|++.|+|+++++....|...+
T Consensus       179 illLDEPts~LD~~~~~~i~~~~~~~~---~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~~~~~~~~  255 (281)
T d1r0wa_         179 LYLLDSPFGYLDVFTEEQVFESCVCKL---MANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKL  255 (281)
T ss_dssp             EEEEESCCCSSCHHHHHHHHHHCCCCC---TTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHCHHHHHHH
T ss_pred             chhhcCccccCCHHHHHHHHHHHHHHh---hCCCEEEEEechHHHHHhCCEEEEEECCEEEEECCHHHHhccCcHHHHHH
Confidence            999999999999999988876532221   34789999999999888899999999999999999999998776675544

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.4e-54  Score=385.15  Aligned_cols=213  Identities=21%  Similarity=0.324  Sum_probs=182.6

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .|+++||+++|       +|+||||+|++||++||+||||||||||+++|+|+. |++|+|.++|+++..++...++...
T Consensus         3 il~~~dv~~~~-------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~   74 (231)
T d1l7vc_           3 VMQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHR   74 (231)
T ss_dssp             EEEEEEECCTT-------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHE
T ss_pred             EEEEECcccCc-------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhc
Confidence            38999997654       699999999999999999999999999999999986 5899999999999888888888889


Q ss_pred             EEEccCCcC-ccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC---
Q 020527          159 GFVGQEPQL-LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR---  234 (325)
Q Consensus       159 ~~v~Q~~~l-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~---  234 (325)
                      +|++|+... |..++++++.++.......+.+.+..+..++.+.+++.         ..+|||||||||+|||||++   
T Consensus        75 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~LSgG~~Qrv~iA~al~~~~p  145 (231)
T d1l7vc_          75 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRS---------TNQLSGGEWQRVRLAAVVLQITP  145 (231)
T ss_dssp             EEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTTTTSB---------GGGCCHHHHHHHHHHHHHHHHCT
T ss_pred             eeeeccccCCccccHHHHhhhccchhhHHHHHHHHHHhcCCHhHhCcC---------hhhcCHHHHHHHHHHHHHHhhCc
Confidence            999998865 57899999987654444455555565555544333222         25799999999999999997   


Q ss_pred             ----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhhc
Q 020527          235 ----DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK  309 (325)
Q Consensus       235 ----~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~  309 (325)
                          +|+||||||||+|||+.++..+.++++++++   .|+|||++|||++.+. .|||+++|++|++++.|++++++++
T Consensus       146 ~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~---~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~  222 (231)
T d1l7vc_         146 QANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ---QGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP  222 (231)
T ss_dssp             TTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHH---TTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred             ccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHhCC
Confidence                7799999999999999999999999999975   4899999999999875 5999999999999999999999876


Q ss_pred             CH
Q 020527          310 GR  311 (325)
Q Consensus       310 ~~  311 (325)
                      +.
T Consensus       223 ~~  224 (231)
T d1l7vc_         223 PN  224 (231)
T ss_dssp             HH
T ss_pred             hH
Confidence            53

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=5.2e-49  Score=343.34  Aligned_cols=192  Identities=23%  Similarity=0.374  Sum_probs=155.2

Q ss_pred             cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527           79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI  158 (325)
Q Consensus        79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i  158 (325)
                      .|+++||+|+|+.    ++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..     .+.++
T Consensus         2 ~lev~~ls~~y~~----~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i   72 (200)
T d1sgwa_           2 KLEIRDLSVGYDK----PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKI   72 (200)
T ss_dssp             EEEEEEEEEESSS----EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGE
T ss_pred             eEEEEEEEEEeCC----eEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhH-----hcCcE
Confidence            4899999999952    59999999999999999999999999999999999999999999999998753     46789


Q ss_pred             EEEccCCcCc-cccHHHHHhcCC---CCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 020527          159 GFVGQEPQLL-QMDIKSNIMYGC---PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR  234 (325)
Q Consensus       159 ~~v~Q~~~l~-~~tv~enl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~  234 (325)
                      +|+||++.++ ..|++||+.+..   .....+.++.++++..++.+        ..  ....+||||||||++|||||+.
T Consensus        73 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~--~~~~~LSgG~~qrv~ia~al~~  142 (200)
T d1sgwa_          73 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD--------LK--KKLGELSQGTIRRVQLASTLLV  142 (200)
T ss_dssp             EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC--------TT--SBGGGSCHHHHHHHHHHHHTTS
T ss_pred             EEEeecccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcc--------cc--cccCcCCCcHHHHHHHHHHHhc
Confidence            9999999887 579999985421   12233444444444332211        11  1125799999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeC
Q 020527          235 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD  294 (325)
Q Consensus       235 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~  294 (325)
                      +|+++||||||+|||+.++.++++.+.++.++  .+.++|.++|++   ..||++.+|++
T Consensus       143 ~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~--~~~~ii~~~~~l---~~~D~~~~l~~  197 (200)
T d1sgwa_         143 NAEIYVLDDPVVAIDEDSKHKVLKSILEILKE--KGIVIISSREEL---SYCDVNENLHK  197 (200)
T ss_dssp             CCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH--HSEEEEEESSCC---TTSSEEEEGGG
T ss_pred             CCCEEEEcCcccccCHHHHHHHHHHHHHHHhC--CCEEEEEEechh---hhcchhhheee
Confidence            99999999999999999999999999998764  466666666665   36999988753

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.82  E-value=3e-22  Score=168.17  Aligned_cols=168  Identities=13%  Similarity=0.140  Sum_probs=108.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEc-----cCCcCccccHHHHHhcCCCCCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG-----QEPQLLQMDIKSNIMYGCPKDV  184 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~-----Q~~~l~~~tv~enl~~~~~~~~  184 (325)
                      .++|+||||||||||+++|+|.++|+.|.+.+.+.+.....     ++.++..     +...++..+...+..++.. ..
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~   75 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETK-----KRTGFRIITTEGKKKIFSSKFFTSKKLVGSY-GV   75 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC-----------CCEEEEEETTCCEEEEEETTCCCSSEETTE-EE
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHH-----HhhhhhhhhhhHHHHHHhhhhhhhhhhhhhh-hc
Confidence            48999999999999999999999999999999887653321     1222221     1111122222111111100 00


Q ss_pred             CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh
Q 020527          185 KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALR  264 (325)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~  264 (325)
                      ..             +.              ..+|+|+++|.++++++..+|+++++|||....+  ....+.+.+.++.
T Consensus        76 ~~-------------~~--------------~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~~~l  126 (178)
T d1ye8a1          76 NV-------------QY--------------FEELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVRQIM  126 (178)
T ss_dssp             CH-------------HH--------------HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHHHHH
T ss_pred             Cc-------------ch--------------hhhhhhhhHHHHHHHHHhcCCCceeecCCCccch--hhHHHHHHHHHHh
Confidence            00             00              1268999999999999999999999999854433  2234455555544


Q ss_pred             ccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHH
Q 020527          265 NDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK  318 (325)
Q Consensus       265 ~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~  318 (325)
                      +.  .+.++|+++|+.+....||++..+.+|++++-+..    +.+.++++++.
T Consensus       127 ~~--~~~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~~----nrd~~~~~i~~  174 (178)
T d1ye8a1         127 HD--PNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPE----NRDVILEDILS  174 (178)
T ss_dssp             TC--TTSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTT----TTTTHHHHHHH
T ss_pred             cc--CCCEEEEEEccHHHHHhhceEEEEeCCEEEEECCc----cHHHHHHHHHH
Confidence            32  47899999999877778999999999999876432    12344555544

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.57  E-value=9.1e-15  Score=137.30  Aligned_cols=74  Identities=27%  Similarity=0.402  Sum_probs=62.8

Q ss_pred             CCCChHHHHHHHHHHHH----cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEE
Q 020527          216 DLLSGGQKQRIAIARAI----LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVV  291 (325)
Q Consensus       216 ~~LSgGq~QRv~iAral----~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~  291 (325)
                      ..||||||.+++||-.+    ..++++++||||+++||+.....+.+.|.++..   .+.-+|++||++..+..||+++.
T Consensus       331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~---~~~Q~I~iTH~~~~~~~ad~~~~  407 (427)
T d1w1wa_         331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN---PDLQFIVISLKNTMFEKSDALVG  407 (427)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB---TTBEEEEECSCHHHHTTCSEEEE
T ss_pred             hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC---CCCEEEEEeCCHHHHHhcccEEE
Confidence            34799999998876544    467889999999999999999999999988743   24569999999999999999775


Q ss_pred             E
Q 020527          292 I  292 (325)
Q Consensus       292 l  292 (325)
                      +
T Consensus       408 V  408 (427)
T d1w1wa_         408 V  408 (427)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.45  E-value=4.3e-13  Score=121.06  Aligned_cols=76  Identities=29%  Similarity=0.430  Sum_probs=64.7

Q ss_pred             CCCChHHHHHHHHHHHH----cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEE
Q 020527          216 DLLSGGQKQRIAIARAI----LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVV  291 (325)
Q Consensus       216 ~~LSgGq~QRv~iAral----~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~  291 (325)
                      ..+|+|||+...++..+    ..+|.++++|||-++|+|....++.+.|++..+    +.-+|++||.+..+..+|+++.
T Consensus       218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~----~~QviitTHsp~~~~~~d~~~~  293 (308)
T d1e69a_         218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK----HTQFIVITHNKIVMEAADLLHG  293 (308)
T ss_dssp             GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT----TSEEEEECCCTTGGGGCSEEEE
T ss_pred             hhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc----CCEEEEEECCHHHHHhcccEEE
Confidence            35899999998776653    457899999999999999999999999998853    4679999999999999999855


Q ss_pred             --EeCC
Q 020527          292 --IDDG  295 (325)
Q Consensus       292 --l~~G  295 (325)
                        +++|
T Consensus       294 v~~~~g  299 (308)
T d1e69a_         294 VTMVNG  299 (308)
T ss_dssp             EEESSS
T ss_pred             EEEeCC
Confidence              5666

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.36  E-value=2.6e-06  Score=73.05  Aligned_cols=49  Identities=18%  Similarity=0.238  Sum_probs=36.0

Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHH-HHHHhhccCCCCeEEEEEecCchHHH
Q 020527          233 LRDPAILLLDEATSALDSESEHYVKG-VLHALRNDCKTKRTVIVIAHRLSTIK  284 (325)
Q Consensus       233 ~~~p~llllDEPts~LD~~~~~~i~~-~l~~l~~~~~~g~tvi~vtH~~~~~~  284 (325)
                      +.+..++|+||+..|=|+.....+.. +++.+.+   .+..++++||..+...
T Consensus       112 ~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~---~~~~~i~tTH~~eL~~  161 (224)
T d1ewqa2         112 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE---RRAYTLFATHYFELTA  161 (224)
T ss_dssp             CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHHHHT
T ss_pred             CCCCcEEeecccccCcchhhhcchHHHHHHHHhh---cCcceEEeeechhhhh
Confidence            45667999999999999976555444 4455543   3568999999987654

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.23  E-value=3e-06  Score=73.06  Aligned_cols=49  Identities=14%  Similarity=0.160  Sum_probs=35.8

Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHH-HHHHhhccCCCCeEEEEEecCchHH
Q 020527          233 LRDPAILLLDEATSALDSESEHYVKG-VLHALRNDCKTKRTVIVIAHRLSTI  283 (325)
Q Consensus       233 ~~~p~llllDEPts~LD~~~~~~i~~-~l~~l~~~~~~g~tvi~vtH~~~~~  283 (325)
                      +.+..++|+||+..|=++.....+.. .++.+...  .+..++++||..+..
T Consensus       118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~--~~~~~i~tTH~~~l~  167 (234)
T d1wb9a2         118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANK--IKALTLFATHYFELT  167 (234)
T ss_dssp             CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHT--TCCEEEEECSCGGGG
T ss_pred             cccccEEeecccccCCChhhhhHHHHHhhhhhhcc--ccceEEEecchHHHh
Confidence            44566999999999999987766644 45666542  356789999977654

>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Membrane and cell surface proteins and peptides
fold: ABC transporter transmembrane region
superfamily: ABC transporter transmembrane region
family: ABC transporter transmembrane region
domain: Multidrug resistance ABC transporter MsbA, N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.97  E-value=2.5e-06  Score=74.55  Aligned_cols=61  Identities=8%  Similarity=0.135  Sum_probs=57.8

Q ss_pred             eeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCC
Q 020527            3 VLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPS   63 (325)
Q Consensus         3 ~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~   63 (325)
                      +++|++++..|++|+|+++++..+...+..|+..+...+..++++.++.+|+.+++|.+||
T Consensus       258 l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~E  318 (319)
T d3b60a2         258 LYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQE  318 (319)
T ss_dssp             HHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            5678899999999999999999999999999999999999999999999999999998876

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=97.79  E-value=3.7e-05  Score=66.87  Aligned_cols=33  Identities=36%  Similarity=0.409  Sum_probs=26.8

Q ss_pred             ceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHH
Q 020527           97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL  129 (325)
Q Consensus        97 iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~  129 (325)
                      -|+++.-=+.+|+++.|.|++|+|||||+.-++
T Consensus        24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred             hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence            455544347899999999999999999987766

>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Membrane and cell surface proteins and peptides
fold: ABC transporter transmembrane region
superfamily: ABC transporter transmembrane region
family: ABC transporter transmembrane region
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.78  E-value=9.4e-06  Score=70.93  Aligned_cols=61  Identities=30%  Similarity=0.426  Sum_probs=57.4

Q ss_pred             eeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCC
Q 020527            3 VLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPS   63 (325)
Q Consensus         3 ~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~   63 (325)
                      +++|++++..|.+|+|+++++..+...+..|+..+...+..++++..+++|+.+++|.+||
T Consensus       263 l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~e~e  323 (323)
T d2hyda2         263 IGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYD  323 (323)
T ss_dssp             HHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCS
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence            5678999999999999999999999999999999999999999999999999999998764

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=97.74  E-value=6.7e-07  Score=73.34  Aligned_cols=34  Identities=21%  Similarity=0.266  Sum_probs=30.0

Q ss_pred             ceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcC
Q 020527           97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus        97 iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .+++.++++.+| +++|+|||||||||++.+|.-+
T Consensus        14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~   47 (222)
T d1qhla_          14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA   47 (222)
T ss_dssp             TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred             CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence            578889999876 8999999999999999999744

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.64  E-value=7e-06  Score=65.64  Aligned_cols=24  Identities=29%  Similarity=0.490  Sum_probs=21.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      +++|+|++|||||||++.|+.-+.
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~   27 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALC   27 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999986554

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.63  E-value=8.5e-06  Score=66.85  Aligned_cols=26  Identities=38%  Similarity=0.400  Sum_probs=23.6

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHcCCC
Q 020527          108 NEVVAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       108 Ge~~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      |.++.|+||||||||||++.|..-++
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            88999999999999999999987654

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.63  E-value=1.4e-05  Score=68.12  Aligned_cols=35  Identities=23%  Similarity=0.341  Sum_probs=26.7

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEE
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI  141 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i  141 (325)
                      +|++++++|+||+|||||+|.|.+-.....|+|.-
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~  128 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE  128 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchhhhhccCccc
Confidence            58999999999999999999999877767787764

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=2.3e-06  Score=69.07  Aligned_cols=35  Identities=20%  Similarity=0.141  Sum_probs=29.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCE
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF  144 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~  144 (325)
                      .+.|+||+|+|||||++.++..+....+.+.+.+.
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~   37 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYT   37 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEEC
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEe
Confidence            58899999999999999999998877666655443

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.55  E-value=2.1e-05  Score=63.02  Aligned_cols=26  Identities=35%  Similarity=0.520  Sum_probs=23.9

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .|+++.|.||+||||||+.+.|+..+
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999999998765

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=97.47  E-value=8.2e-05  Score=64.32  Aligned_cols=46  Identities=20%  Similarity=0.260  Sum_probs=31.9

Q ss_pred             HHcCCCCEEEEeCCCCC-----CCHHHHHHHHHHHHHhhccCCCCeEEEEEec
Q 020527          231 AILRDPAILLLDEATSA-----LDSESEHYVKGVLHALRNDCKTKRTVIVIAH  278 (325)
Q Consensus       231 al~~~p~llllDEPts~-----LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH  278 (325)
                      .-..+|+++++|--++-     -|......+...|..+++.  .++++|++.|
T Consensus       128 ~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~--~~~~vi~v~H  178 (274)
T d1nlfa_         128 RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAAD--TGCSIVFLHH  178 (274)
T ss_dssp             HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHH--HCCEEEEEEE
T ss_pred             HhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhc--CCCceehhhh
Confidence            34579999999955432     1445555677777777653  4889999988

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.47  E-value=2.6e-05  Score=62.49  Aligned_cols=27  Identities=19%  Similarity=0.222  Sum_probs=24.1

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      ++|-++.|+|++||||||+.+.|+--+
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L   30 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTL   30 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            468999999999999999999999554

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.42  E-value=1.5e-05  Score=68.14  Aligned_cols=35  Identities=23%  Similarity=0.309  Sum_probs=22.7

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEE
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI  141 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i  141 (325)
                      +|..++++|+||+|||||+|.|.|-.....|+|.=
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~  130 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE  130 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhHhhhccccc
Confidence            58899999999999999999999877667777763

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.40  E-value=2.6e-05  Score=62.73  Aligned_cols=26  Identities=27%  Similarity=0.335  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHcCCCC
Q 020527          109 EVVAIVGLSGSGKSTFVNLLLRLYEP  134 (325)
Q Consensus       109 e~~~iiG~nGsGKSTLl~~l~gl~~~  134 (325)
                      .+++|+|++|||||||++-|...+..
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~   27 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVR   27 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            37899999999999999888776654

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=3.5e-05  Score=61.58  Aligned_cols=27  Identities=26%  Similarity=0.471  Sum_probs=23.8

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      +.+.++.|.||+||||||+.+.|+.-+
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            467899999999999999999998644

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.37  E-value=4.2e-05  Score=61.38  Aligned_cols=24  Identities=46%  Similarity=0.639  Sum_probs=21.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHcCC
Q 020527          109 EVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       109 e~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      ..++|+||+|||||||.+.|+.-+
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999999765

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.29  E-value=6.5e-05  Score=59.99  Aligned_cols=27  Identities=19%  Similarity=0.380  Sum_probs=23.7

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      ++|-.++|.||+||||||+.+.|+--+
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence            457789999999999999999998654

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.28  E-value=6e-05  Score=60.10  Aligned_cols=26  Identities=27%  Similarity=0.372  Sum_probs=23.5

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHcCCC
Q 020527          108 NEVVAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       108 Ge~~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      ..++.|.|++||||||+.+.|+..+.
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999998774

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.26  E-value=6.3e-05  Score=61.27  Aligned_cols=24  Identities=46%  Similarity=0.576  Sum_probs=21.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      ++||.||+|||||||.+.|.-.+.
T Consensus        24 iIgI~G~~GSGKSTla~~L~~~l~   47 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQTLR   47 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            689999999999999999986554

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.25  E-value=7.5e-05  Score=62.62  Aligned_cols=26  Identities=27%  Similarity=0.462  Sum_probs=22.8

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .|.++.|+||||||||||.+.|.--.
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence            48899999999999999998887544

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.23  E-value=5.9e-05  Score=60.64  Aligned_cols=29  Identities=28%  Similarity=0.454  Sum_probs=24.1

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHcCCCCCC
Q 020527          108 NEVVAIVGLSGSGKSTFVNLLLRLYEPSD  136 (325)
Q Consensus       108 Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~  136 (325)
                      +.+++|.|++||||||+.+.|+-.+....
T Consensus         1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~   29 (190)
T d1khta_           1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEG   29 (190)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            36899999999999999999987655443

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.21  E-value=7.9e-05  Score=58.33  Aligned_cols=22  Identities=32%  Similarity=0.650  Sum_probs=19.1

Q ss_pred             cEEEEEcCCCChHHHHHHHHHc
Q 020527          109 EVVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       109 e~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      +++.|.|++|||||||.+.|..
T Consensus         3 klIii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4788999999999999997754

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.20  E-value=7.6e-05  Score=58.44  Aligned_cols=23  Identities=35%  Similarity=0.421  Sum_probs=20.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .+.|+||+||||||+.+.|+--+
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L   26 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQL   26 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            47789999999999999998654

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=6.5e-05  Score=61.19  Aligned_cols=26  Identities=35%  Similarity=0.399  Sum_probs=23.2

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      +|-++.|+|++||||||+.+.|+-.+
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l   43 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYL   43 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            47799999999999999999998654

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.14  E-value=9.1e-05  Score=58.69  Aligned_cols=32  Identities=34%  Similarity=0.534  Sum_probs=25.0

Q ss_pred             cEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECC
Q 020527          109 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG  143 (325)
Q Consensus       109 e~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g  143 (325)
                      .++.|.||+||||||+.+.|+..++   +.+.++|
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~   34 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG   34 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC---CCEEEeh
Confidence            4688999999999999999997653   3444443

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.12  E-value=0.0001  Score=58.60  Aligned_cols=22  Identities=27%  Similarity=0.377  Sum_probs=19.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++|+||+||||||+.+.|+--
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3679999999999999999753

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.05  E-value=0.00025  Score=57.39  Aligned_cols=22  Identities=50%  Similarity=0.605  Sum_probs=20.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .+||+|+.|+|||||++.|+|-
T Consensus        10 kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            5899999999999999999874

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.03  E-value=0.00013  Score=59.77  Aligned_cols=22  Identities=41%  Similarity=0.647  Sum_probs=20.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++|+|++|+|||||++.|.|.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHhcCC
Confidence            4999999999999999999985

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.00  E-value=0.00074  Score=57.10  Aligned_cols=44  Identities=14%  Similarity=0.332  Sum_probs=33.0

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHH
Q 020527          235 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI  283 (325)
Q Consensus       235 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~  283 (325)
                      +.+++++||.- .|.......+.+.+.+..    ....+|++|++.+.+
T Consensus       131 ~~~iiiide~d-~l~~~~~~~l~~~~e~~~----~~~~~Il~tn~~~~i  174 (252)
T d1sxje2         131 RYKCVIINEAN-SLTKDAQAALRRTMEKYS----KNIRLIMVCDSMSPI  174 (252)
T ss_dssp             CCEEEEEECTT-SSCHHHHHHHHHHHHHST----TTEEEEEEESCSCSS
T ss_pred             CceEEEecccc-ccccccchhhhccccccc----ccccceeeeccccch
Confidence            56799999995 478888877877777653    356689999988643

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.97  E-value=0.00017  Score=59.14  Aligned_cols=22  Identities=45%  Similarity=0.730  Sum_probs=19.2

Q ss_pred             EEEEcCCCChHHHHHHHHHcCC
Q 020527          111 VAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       111 ~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      +.|+||||||||||++.|+.-.
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            6899999999999999886543

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.96  E-value=0.00016  Score=64.80  Aligned_cols=36  Identities=25%  Similarity=0.462  Sum_probs=30.2

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEE
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI  141 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i  141 (325)
                      +.+..+.|.|+.|||||||++.|++.++|..=-|.+
T Consensus       164 ~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti  199 (323)
T d1g6oa_         164 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI  199 (323)
T ss_dssp             HHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred             HhCCCEEEEeeccccchHHHHHHhhhcccccceeec
Confidence            445568999999999999999999999887656666

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.00018  Score=59.83  Aligned_cols=23  Identities=26%  Similarity=0.511  Sum_probs=20.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      ++||.|++||||||+.+.|+-.+
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l   26 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLL   26 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999987654

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.89  E-value=0.00022  Score=60.01  Aligned_cols=23  Identities=39%  Similarity=0.608  Sum_probs=20.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      +++|+|+.|||||||++.|....
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~   24 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYL   24 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Confidence            68999999999999999997643

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.00022  Score=58.15  Aligned_cols=23  Identities=22%  Similarity=0.488  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCChHHHHHHHHHcC
Q 020527          109 EVVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       109 e~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      ..+.|+||||+|||||++-|...
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHh
Confidence            57899999999999999988753

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.88  E-value=0.00024  Score=56.85  Aligned_cols=22  Identities=45%  Similarity=0.584  Sum_probs=19.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++|+|+.|+|||||++.|+|-
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~   23 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKK   23 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999984

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.87  E-value=0.00024  Score=58.09  Aligned_cols=25  Identities=36%  Similarity=0.507  Sum_probs=21.7

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          108 NEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       108 Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      ..+++|+||.||||||+.+.|+--+
T Consensus         6 p~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4589999999999999999998643

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.86  E-value=0.00024  Score=58.49  Aligned_cols=21  Identities=43%  Similarity=0.654  Sum_probs=18.5

Q ss_pred             EEEEcCCCChHHHHHHHHHcC
Q 020527          111 VAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       111 ~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      +.|+||||||||||.+.|+-.
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            679999999999999988653

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.00035  Score=56.87  Aligned_cols=26  Identities=23%  Similarity=0.373  Sum_probs=23.7

Q ss_pred             eeCCcEEEEEcCCCChHHHHHHHHHc
Q 020527          105 IEANEVVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       105 i~~Ge~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      +++|+++.|.||+|||||||..-++.
T Consensus        20 i~~G~v~~i~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          20 IETGSITEMFGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence            79999999999999999999977664

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.84  E-value=0.00024  Score=57.23  Aligned_cols=22  Identities=32%  Similarity=0.380  Sum_probs=20.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++|+|++|+|||||++.|.|-
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999984

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.83  E-value=0.00016  Score=58.66  Aligned_cols=21  Identities=33%  Similarity=0.600  Sum_probs=19.5

Q ss_pred             EEEEcCCCChHHHHHHHHHcC
Q 020527          111 VAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       111 ~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      +||+|++++|||||++.|.|-
T Consensus         4 VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEEE
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            799999999999999999874

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.81  E-value=0.00029  Score=54.88  Aligned_cols=22  Identities=27%  Similarity=0.517  Sum_probs=20.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++|+|++|+|||||++.+.+-
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999974

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.80  E-value=0.0003  Score=56.71  Aligned_cols=22  Identities=55%  Similarity=0.690  Sum_probs=20.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      +++|+|++|+|||||++.|+|-
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7999999999999999999985

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.80  E-value=0.00022  Score=57.09  Aligned_cols=23  Identities=26%  Similarity=0.479  Sum_probs=20.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++|+|++|||||||++.+.+-.
T Consensus        15 kI~lvG~~~vGKTsLl~~l~~~~   37 (186)
T d1f6ba_          15 KLVFLGLDNAGKTTLLHMLKDDR   37 (186)
T ss_dssp             EEEEEEETTSSHHHHHHHHSCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68899999999999999998754

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.79  E-value=0.00031  Score=54.85  Aligned_cols=22  Identities=32%  Similarity=0.409  Sum_probs=19.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .+.|+|++|||||||++.+.+-
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999998753

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.79  E-value=0.00031  Score=56.27  Aligned_cols=22  Identities=50%  Similarity=0.646  Sum_probs=20.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      +++|+|.+|+|||||++.|.|-
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999983

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.78  E-value=0.0003  Score=56.14  Aligned_cols=22  Identities=36%  Similarity=0.614  Sum_probs=19.7

Q ss_pred             EEEEcCCCChHHHHHHHHHcCC
Q 020527          111 VAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       111 ~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      +.|+|++||||||+.+.|+-.+
T Consensus         3 I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6789999999999999998654

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.76  E-value=0.00029  Score=57.80  Aligned_cols=28  Identities=29%  Similarity=0.574  Sum_probs=24.4

Q ss_pred             eeCCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          105 IEANEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       105 i~~Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      ++++.++.|+||.||||||+.+.|+--+
T Consensus         5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4567899999999999999999998643

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.75  E-value=0.0004  Score=56.60  Aligned_cols=25  Identities=24%  Similarity=0.341  Sum_probs=22.3

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHc
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      ++|=.+.|+||.||||||..+.|+-
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHH
Confidence            4677888999999999999999994

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.74  E-value=0.00036  Score=54.80  Aligned_cols=41  Identities=15%  Similarity=0.068  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q 020527          221 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL  263 (325)
Q Consensus       221 Gq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l  263 (325)
                      .+.-.-.++...+.+...-++  |+|+.+-....++++.|.+.
T Consensus       124 ~~~i~~~~~~~~~~~~~~~~~--~~SA~~g~gv~e~~~~l~~~  164 (169)
T d1upta_         124 SSEMANSLGLPALKDRKWQIF--KTSATKGTGLDEAMEWLVET  164 (169)
T ss_dssp             HHHHHHHHTGGGCTTSCEEEE--ECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCEEE--EEeCCCCCCHHHHHHHHHHH
Confidence            344444556666666666666  89999998888877766443

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.73  E-value=0.00035  Score=57.39  Aligned_cols=22  Identities=32%  Similarity=0.487  Sum_probs=20.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++|+|++|||||||++.|.+-
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999874

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.72  E-value=0.00033  Score=56.23  Aligned_cols=23  Identities=30%  Similarity=0.387  Sum_probs=19.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .+.|+|++||||||+.+.|+--+
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~L   26 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARAL   26 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            46689999999999999997533

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=96.70  E-value=0.0004  Score=54.67  Aligned_cols=23  Identities=35%  Similarity=0.432  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHcC
Q 020527          109 EVVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       109 e~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      =.++++|+.|+|||||++.|.|.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            36899999999999999999975

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.70  E-value=0.00038  Score=56.99  Aligned_cols=25  Identities=32%  Similarity=0.515  Sum_probs=22.2

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          108 NEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       108 Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      -.++.|+||.||||||+.+.|+--+
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4579999999999999999998755

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.66  E-value=0.00027  Score=57.08  Aligned_cols=21  Identities=33%  Similarity=0.626  Sum_probs=19.8

Q ss_pred             EEEEcCCCChHHHHHHHHHcC
Q 020527          111 VAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       111 ~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      +||+|++|+|||||++.|.|.
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            899999999999999999875

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.64  E-value=0.00036  Score=56.90  Aligned_cols=23  Identities=39%  Similarity=0.489  Sum_probs=20.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      ++.|+||.||||||+.+.|+--+
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47799999999999999998544

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.00048  Score=56.15  Aligned_cols=23  Identities=35%  Similarity=0.551  Sum_probs=20.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      ++.|+||.||||||..+.|+--+
T Consensus         3 iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999998543

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.62  E-value=0.00045  Score=55.42  Aligned_cols=24  Identities=25%  Similarity=0.516  Sum_probs=21.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      ++.|.|++||||||+.+.|+..+.
T Consensus         3 iivi~G~~GsGKTT~~~~La~~L~   26 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            677899999999999999997764

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.61  E-value=0.0005  Score=55.28  Aligned_cols=23  Identities=30%  Similarity=0.615  Sum_probs=19.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .+.|+||.||||||+.+.|+--+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            36799999999999999997544

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.58  E-value=0.0005  Score=54.83  Aligned_cols=22  Identities=45%  Similarity=0.619  Sum_probs=19.1

Q ss_pred             EEEEcCCCChHHHHHHHHHcCC
Q 020527          111 VAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       111 ~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      +.|+|++||||||+.+.|+--+
T Consensus         4 IvliG~~G~GKSTig~~La~~l   25 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKAL   25 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5678999999999999998654

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.51  E-value=0.00068  Score=54.81  Aligned_cols=24  Identities=50%  Similarity=0.732  Sum_probs=21.1

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHH
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLL  129 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~  129 (325)
                      ++-+++.++|++||||||+.+-++
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~   35 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHL   35 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            456799999999999999998874

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.48  E-value=0.00062  Score=55.44  Aligned_cols=21  Identities=48%  Similarity=0.656  Sum_probs=19.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHc
Q 020527          110 VVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      ++||.|++||||||+.+.|.-
T Consensus         5 IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           5 IIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999864

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.48  E-value=0.00087  Score=52.97  Aligned_cols=23  Identities=22%  Similarity=0.338  Sum_probs=20.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++|+|+.|||||||++.+.+-.
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~~   26 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGED   26 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            47899999999999999998753

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.48  E-value=0.00065  Score=56.41  Aligned_cols=29  Identities=31%  Similarity=0.434  Sum_probs=22.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHc---CCCCCCCe
Q 020527          110 VVAIVGLSGSGKSTFVNLLLR---LYEPSDGQ  138 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~g---l~~~~~G~  138 (325)
                      +++|-||+||||||..+.|+-   +...++|.
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~lg~~~istGd   36 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDFGFTYLDTGA   36 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEECHHH
Confidence            578899999999999999985   43344444

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.47  E-value=0.00069  Score=55.48  Aligned_cols=24  Identities=29%  Similarity=0.537  Sum_probs=21.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      ++.++|.+||||||+.+.|+..+.
T Consensus         4 li~l~GlpgsGKSTla~~L~~~l~   27 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLTRYLN   27 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            688999999999999999997553

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.47  E-value=0.00069  Score=54.76  Aligned_cols=23  Identities=30%  Similarity=0.653  Sum_probs=20.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      ++.|+||.||||||+.+.|+--+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998644

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.45  E-value=0.00052  Score=58.54  Aligned_cols=33  Identities=24%  Similarity=0.388  Sum_probs=26.3

Q ss_pred             cEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECC
Q 020527          109 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG  143 (325)
Q Consensus       109 e~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g  143 (325)
                      ..+.+.||+|||||||.+.|++.+.  .+-+.++.
T Consensus        33 ~~ilL~GpPGtGKT~la~~la~~~~--~~~~~i~~   65 (273)
T d1gvnb_          33 TAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN   65 (273)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhh--cceEEEec
Confidence            4588999999999999999999764  33555554

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=96.45  E-value=0.00035  Score=55.97  Aligned_cols=23  Identities=39%  Similarity=0.406  Sum_probs=20.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++|+|++++|||||++.|.+--
T Consensus        18 ~I~lvG~~NvGKSSL~n~L~~~~   40 (188)
T d1puia_          18 EVAFAGRSNAGKSSALNTLTNQK   40 (188)
T ss_dssp             EEEEEECTTSSHHHHHTTTCCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            59999999999999999998753

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.45  E-value=0.00072  Score=55.86  Aligned_cols=30  Identities=33%  Similarity=0.481  Sum_probs=24.6

Q ss_pred             EEEEEcCCCChHHHHHHHHH---cCCCCCCCeE
Q 020527          110 VVAIVGLSGSGKSTFVNLLL---RLYEPSDGQI  139 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~---gl~~~~~G~I  139 (325)
                      +++|.||.||||||+.+.|+   |+...++|.+
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~gl~~iStGdL   37 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI   37 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHH
Confidence            89999999999999999998   4444555654

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.39  E-value=0.00076  Score=58.14  Aligned_cols=23  Identities=30%  Similarity=0.486  Sum_probs=20.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++|+|++|+|||||+|.|.|-.
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            48899999999999999999854

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.38  E-value=0.00059  Score=55.69  Aligned_cols=25  Identities=36%  Similarity=0.434  Sum_probs=22.2

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          108 NEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       108 Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .=+++|-|+.||||||+++.|...+
T Consensus         9 p~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1           9 PFTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            3489999999999999999998755

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.34  E-value=0.00089  Score=53.85  Aligned_cols=22  Identities=18%  Similarity=0.385  Sum_probs=19.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .+.|+||.||||||..+.|+--
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~   23 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEK   23 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4679999999999999999853

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.34  E-value=0.00029  Score=55.45  Aligned_cols=22  Identities=45%  Similarity=0.558  Sum_probs=20.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++|+|++|+|||||++.|.|-
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4799999999999999999984

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.33  E-value=0.00094  Score=55.71  Aligned_cols=42  Identities=26%  Similarity=0.237  Sum_probs=31.2

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcCCCC--CCCeEEECCEeCC
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDGQIYIDGFPLT  147 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~--~~G~I~i~g~~i~  147 (325)
                      ++|-++.+.|.+||||||+.+.|.--+..  ..-.+.++|..+.
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR   65 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR   65 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHH
Confidence            56889999999999999999998743321  2235778886553

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.31  E-value=0.00096  Score=53.08  Aligned_cols=22  Identities=36%  Similarity=0.451  Sum_probs=20.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++|+|.+|||||||++.|.+-
T Consensus        17 kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          17 KVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999999874

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.28  E-value=0.001  Score=53.51  Aligned_cols=23  Identities=30%  Similarity=0.352  Sum_probs=19.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .+.|+||.||||||+.+.|+--+
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998544

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.24  E-value=0.0012  Score=54.89  Aligned_cols=25  Identities=24%  Similarity=0.429  Sum_probs=23.1

Q ss_pred             eeCCcEEEEEcCCCChHHHHHHHHH
Q 020527          105 IEANEVVAIVGLSGSGKSTFVNLLL  129 (325)
Q Consensus       105 i~~Ge~~~iiG~nGsGKSTLl~~l~  129 (325)
                      +++|+++.|.||+|||||||..-++
T Consensus        31 i~~G~~~li~G~pGsGKT~l~lq~~   55 (251)
T d1szpa2          31 VETGSITELFGEFRTGKSQLCHTLA   55 (251)
T ss_dssp             EESSSEEEEEESTTSSHHHHHHHHT
T ss_pred             CcCCeEEEEEcCCCCCHHHHHHHHH
Confidence            8999999999999999999997665

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.24  E-value=0.0006  Score=60.50  Aligned_cols=24  Identities=33%  Similarity=0.486  Sum_probs=21.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      ++||.|++||||||+.+.|..++.
T Consensus        82 iIGIaG~sgSGKSTla~~L~~lL~  105 (308)
T d1sq5a_          82 IISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCCCcHHHHHHHHHHh
Confidence            689999999999999999987764

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=96.22  E-value=0.0011  Score=53.62  Aligned_cols=21  Identities=29%  Similarity=0.517  Sum_probs=19.9

Q ss_pred             EEEEcCCCChHHHHHHHHHcC
Q 020527          111 VAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       111 ~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      +||+|+..||||||++.|.+.
T Consensus         8 IaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEeCCCCcHHHHHHHHHHh
Confidence            899999999999999999874

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.21  E-value=0.0012  Score=54.37  Aligned_cols=22  Identities=41%  Similarity=0.468  Sum_probs=19.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++|+|+.|||||||++.+.+-
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999863

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.19  E-value=0.0011  Score=54.77  Aligned_cols=20  Identities=45%  Similarity=0.707  Sum_probs=18.6

Q ss_pred             EEEEEcCCCChHHHHHHHHH
Q 020527          110 VVAIVGLSGSGKSTFVNLLL  129 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~  129 (325)
                      ++||.|+.||||||+.+++.
T Consensus         4 iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999885

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.0013  Score=54.69  Aligned_cols=28  Identities=21%  Similarity=0.313  Sum_probs=24.4

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcCCC
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      ++|-+++|-|+-||||||+.+.|.--+.
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~   28 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEALC   28 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4689999999999999999999877553

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=96.18  E-value=0.0013  Score=55.00  Aligned_cols=27  Identities=41%  Similarity=0.661  Sum_probs=21.3

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHcCCC
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      ++.+++++||+|+||||.+-=|+..+.
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~   31 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ   31 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            467999999999999998755555443

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.00078  Score=56.47  Aligned_cols=27  Identities=44%  Similarity=0.591  Sum_probs=23.9

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHcCCC
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      ++.+++|-|+-||||||+++.|+..++
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            367899999999999999999998764

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.15  E-value=0.0014  Score=54.09  Aligned_cols=27  Identities=33%  Similarity=0.564  Sum_probs=23.8

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHcCCC
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      +|.+++|-|+-||||||+++.|.-.+.
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~   27 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLE   27 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999999986543

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.14  E-value=0.0013  Score=51.94  Aligned_cols=21  Identities=48%  Similarity=0.744  Sum_probs=18.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHc
Q 020527          110 VVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      .++++|++|+|||||++.+.+
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            478999999999999998765

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.12  E-value=0.00089  Score=59.90  Aligned_cols=26  Identities=31%  Similarity=0.446  Sum_probs=22.6

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHcCCC
Q 020527          108 NEVVAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       108 Ge~~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      .-++||.||.|||||||+..|...+.
T Consensus        54 ~~~IgitG~pGaGKSTLi~~l~~~~~   79 (327)
T d2p67a1          54 TLRLGVTGTPGAGKSTFLEAFGMLLI   79 (327)
T ss_dssp             SEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             ceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            45799999999999999999986554

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.11  E-value=0.0014  Score=53.54  Aligned_cols=23  Identities=35%  Similarity=0.560  Sum_probs=20.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++|+||.||||||+.+.|+--+
T Consensus         8 rIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           8 RAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHB
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999998643

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.0026  Score=50.40  Aligned_cols=21  Identities=38%  Similarity=0.613  Sum_probs=18.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHc
Q 020527          110 VVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      .++++|.+|+|||||++-+.+
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            478999999999999987765

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.09  E-value=0.0015  Score=52.65  Aligned_cols=23  Identities=26%  Similarity=0.436  Sum_probs=19.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .+.|+||.||||||+.+.|+--+
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            46789999999999999998643

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.08  E-value=0.0013  Score=54.98  Aligned_cols=23  Identities=30%  Similarity=0.322  Sum_probs=20.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .+.|.||+|+||||++++++..+
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAREL   69 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHH
Confidence            37899999999999999998755

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.07  E-value=0.0015  Score=55.16  Aligned_cols=25  Identities=24%  Similarity=0.353  Sum_probs=21.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHHcCCC
Q 020527          109 EVVAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       109 e~~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      ..+.|.||+|+||||++++++..+.
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~~~   77 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQELG   77 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHH
Confidence            3578999999999999999998653

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.06  E-value=0.0016  Score=51.93  Aligned_cols=20  Identities=35%  Similarity=0.605  Sum_probs=18.5

Q ss_pred             EEEEcCCCChHHHHHHHHHc
Q 020527          111 VAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       111 ~~iiG~nGsGKSTLl~~l~g  130 (325)
                      ++++|++|+|||||++.+.+
T Consensus         5 i~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            78999999999999998875

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.99  E-value=0.0017  Score=51.61  Aligned_cols=20  Identities=30%  Similarity=0.484  Sum_probs=18.3

Q ss_pred             EEEEcCCCChHHHHHHHHHc
Q 020527          111 VAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       111 ~~iiG~nGsGKSTLl~~l~g  130 (325)
                      ++++|++|+|||||++.+.+
T Consensus         8 i~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            88999999999999998764

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.98  E-value=0.003  Score=51.21  Aligned_cols=32  Identities=34%  Similarity=0.278  Sum_probs=25.3

Q ss_pred             ceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHH
Q 020527           97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL  129 (325)
Q Consensus        97 iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~  129 (325)
                      .++.-.+.+. |.-+.|.|+||+|||||.-.+.
T Consensus         4 ~lH~~~v~~~-g~gvl~~G~sG~GKStlal~l~   35 (176)
T d1kkma_           4 SMHGVLVDIY-GLGVLITGDSGVGKSETALELV   35 (176)
T ss_dssp             EEEEEEEEET-TEEEEEECCTTSCHHHHHHHHH
T ss_pred             eEEEEEEEEC-CEEEEEEeCCCCCHHHHHHHHH
Confidence            5666666555 7789999999999999986655

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.97  E-value=0.0019  Score=59.21  Aligned_cols=24  Identities=46%  Similarity=0.659  Sum_probs=21.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      .++|+|++|+|||||+|.|.|.-.
T Consensus        58 ~Iai~G~~n~GKSSLiNaL~G~~~   81 (400)
T d1tq4a_          58 NVAVTGETGSGKSSFINTLRGIGN   81 (400)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTCCT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            389999999999999999999653

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.95  E-value=0.0019  Score=54.53  Aligned_cols=24  Identities=21%  Similarity=0.504  Sum_probs=20.7

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHc
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      .+.++.|.||.|+|||||++-++.
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHH
Confidence            456899999999999999987764

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=95.95  E-value=0.0016  Score=51.87  Aligned_cols=21  Identities=29%  Similarity=0.580  Sum_probs=19.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHc
Q 020527          110 VVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      .++++|+.|+|||||++.+.+
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            488999999999999999865

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.94  E-value=0.0023  Score=52.86  Aligned_cols=24  Identities=25%  Similarity=0.437  Sum_probs=21.7

Q ss_pred             eeCCcEEEEEcCCCChHHHHHHHH
Q 020527          105 IEANEVVAIVGLSGSGKSTFVNLL  128 (325)
Q Consensus       105 i~~Ge~~~iiG~nGsGKSTLl~~l  128 (325)
                      +++|+++.|.|++|+|||||..-+
T Consensus        23 i~~G~~~~I~G~~G~GKT~la~~~   46 (242)
T d1tf7a1          23 LPIGRSTLVSGTSGTGKTLFSIQF   46 (242)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHH
Confidence            899999999999999999998543

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.93  E-value=0.0025  Score=50.38  Aligned_cols=22  Identities=32%  Similarity=0.510  Sum_probs=19.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++++|++|+|||||++.+.+-
T Consensus         5 Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3899999999999999888753

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.91  E-value=0.0022  Score=53.81  Aligned_cols=24  Identities=33%  Similarity=0.588  Sum_probs=21.9

Q ss_pred             eeCCcEEEEEcCCCChHHHHHHHH
Q 020527          105 IEANEVVAIVGLSGSGKSTFVNLL  128 (325)
Q Consensus       105 i~~Ge~~~iiG~nGsGKSTLl~~l  128 (325)
                      +++|+++.|.||+|||||||.--+
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq~   56 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHTL   56 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHH
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHHH
Confidence            799999999999999999998544

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.90  E-value=0.0025  Score=53.41  Aligned_cols=26  Identities=19%  Similarity=0.470  Sum_probs=23.2

Q ss_pred             eeCCcEEEEEcCCCChHHHHHHHHHc
Q 020527          105 IEANEVVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       105 i~~Ge~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      +++|.++.|.||+|||||||+.-++-
T Consensus        23 i~~gsl~li~G~pGsGKT~l~~qia~   48 (242)
T d1tf7a2          23 FFKDSIILATGATGTGKTLLVSRFVE   48 (242)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            88999999999999999999866553

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.89  E-value=0.0018  Score=54.04  Aligned_cols=21  Identities=24%  Similarity=0.401  Sum_probs=19.5

Q ss_pred             EEEEcCCCChHHHHHHHHHcC
Q 020527          111 VAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       111 ~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      +.|.||+|+||||++++++..
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHH
Confidence            789999999999999999974

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.0038  Score=49.54  Aligned_cols=21  Identities=29%  Similarity=0.495  Sum_probs=18.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHc
Q 020527          110 VVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      .++|+|.+|+|||||++-+.+
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999987654

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.88  E-value=0.0022  Score=53.42  Aligned_cols=27  Identities=30%  Similarity=0.525  Sum_probs=24.5

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHcCCC
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      +|.+++|-|+-||||||+.+.|.-.+.
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~   28 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQ   28 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence            699999999999999999999986654

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.88  E-value=0.0021  Score=51.44  Aligned_cols=21  Identities=38%  Similarity=0.612  Sum_probs=18.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHc
Q 020527          110 VVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      .++++|+.|+|||||++.+.+
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            388999999999999997765

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.87  E-value=0.0023  Score=53.07  Aligned_cols=25  Identities=28%  Similarity=0.497  Sum_probs=22.9

Q ss_pred             eeCCcEEEEEcCCCChHHHHHHHHH
Q 020527          105 IEANEVVAIVGLSGSGKSTFVNLLL  129 (325)
Q Consensus       105 i~~Ge~~~iiG~nGsGKSTLl~~l~  129 (325)
                      +++|+++.|.|++|+|||||..-++
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a   55 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSC   55 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHH
Confidence            8999999999999999999986665

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.86  E-value=0.0039  Score=50.54  Aligned_cols=33  Identities=30%  Similarity=0.307  Sum_probs=26.7

Q ss_pred             CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHH
Q 020527           96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL  129 (325)
Q Consensus        96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~  129 (325)
                      ..++.-.+.+ .|.-+.|.|+||+|||||...+.
T Consensus         4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~   36 (177)
T d1knxa2           4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI   36 (177)
T ss_dssp             EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred             ceEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence            3566666777 58889999999999999987665

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.0022  Score=53.65  Aligned_cols=26  Identities=23%  Similarity=0.298  Sum_probs=23.6

Q ss_pred             eeCCcEEEEEcCCCChHHHHHHHHHc
Q 020527          105 IEANEVVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       105 i~~Ge~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      |++|+++.|.||+|||||||...++.
T Consensus        34 ip~G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          34 IESMAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             BCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            79999999999999999999877663

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.85  E-value=0.0022  Score=50.63  Aligned_cols=20  Identities=25%  Similarity=0.494  Sum_probs=17.9

Q ss_pred             EEEEcCCCChHHHHHHHHHc
Q 020527          111 VAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       111 ~~iiG~nGsGKSTLl~~l~g  130 (325)
                      ++++|++|+|||||++-+.+
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987664

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=95.83  E-value=0.0017  Score=54.57  Aligned_cols=26  Identities=23%  Similarity=0.431  Sum_probs=22.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCCCCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLYEPS  135 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~~~~  135 (325)
                      .+.+.||+|+||||+.++++.-+...
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~~~~~   62 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASELQTN   62 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred             eEEEECCCCCcHHHHHHHHHhccCCC
Confidence            37899999999999999999876544

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.83  E-value=0.0019  Score=57.06  Aligned_cols=35  Identities=20%  Similarity=0.355  Sum_probs=25.4

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCE
Q 020527          108 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF  144 (325)
Q Consensus       108 Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~  144 (325)
                      +.-+.+.||+|||||+|.|+|+..+.  .--+.+++.
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~~~--~~~~~i~~s   83 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKLAN--APFIKVEAT   83 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHT--CCEEEEEGG
T ss_pred             CceEEEECCCCCCHHHHHHHHhhccc--cchhccccc
Confidence            34567999999999999999998653  223444443

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=95.79  E-value=0.0021  Score=54.05  Aligned_cols=23  Identities=22%  Similarity=0.439  Sum_probs=20.4

Q ss_pred             EEEEcCCCChHHHHHHHHHcCCC
Q 020527          111 VAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       111 ~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      +.+.||.|+||||+.+++++.+.
T Consensus        38 ~Ll~GPpG~GKTtla~~la~~~~   60 (239)
T d1ixsb2          38 LLLFGPPGLGKTTLAHVIAHELG   60 (239)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            67999999999999999998543

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=95.78  E-value=0.0026  Score=50.66  Aligned_cols=29  Identities=28%  Similarity=0.292  Sum_probs=25.7

Q ss_pred             eeCCcEEEEEcCCCChHHHHHHHHHcCCC
Q 020527          105 IEANEVVAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       105 i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      .++|.+++|.|+=|||||||.|.++.-+-
T Consensus        30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg   58 (158)
T d1htwa_          30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence            47899999999999999999999986553

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.77  E-value=0.0023  Score=50.55  Aligned_cols=21  Identities=29%  Similarity=0.488  Sum_probs=19.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHc
Q 020527          110 VVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      .++|+|+.|+|||||++.+.+
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998764

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.76  E-value=0.0025  Score=52.76  Aligned_cols=21  Identities=48%  Similarity=0.615  Sum_probs=19.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHc
Q 020527          110 VVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      ++||+|..||||||..+++.-
T Consensus         5 iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHHH
Confidence            689999999999999999864

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.73  E-value=0.0025  Score=50.33  Aligned_cols=21  Identities=29%  Similarity=0.466  Sum_probs=18.6

Q ss_pred             EEEEcCCCChHHHHHHHHHcC
Q 020527          111 VAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       111 ~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      ++++|++|+|||||++.+..-
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999987753

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.69  E-value=0.0031  Score=53.10  Aligned_cols=29  Identities=24%  Similarity=0.458  Sum_probs=24.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHcCCCCCCC
Q 020527          109 EVVAIVGLSGSGKSTFVNLLLRLYEPSDG  137 (325)
Q Consensus       109 e~~~iiG~nGsGKSTLl~~l~gl~~~~~G  137 (325)
                      ..+.|.||.|+||||+++.++..++...+
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~l~~~~~   72 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWELYKDKTT   72 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHhcccC
Confidence            47889999999999999999987764433

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.68  E-value=0.0028  Score=50.53  Aligned_cols=20  Identities=30%  Similarity=0.434  Sum_probs=18.2

Q ss_pred             EEEEcCCCChHHHHHHHHHc
Q 020527          111 VAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       111 ~~iiG~nGsGKSTLl~~l~g  130 (325)
                      ++++|++|+|||||++.+.+
T Consensus         6 ivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            78999999999999998764

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.68  E-value=0.0012  Score=57.80  Aligned_cols=24  Identities=25%  Similarity=0.588  Sum_probs=18.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      ++||.|+|||||||+.+.|.-.+.
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~~   29 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIFR   29 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHh
Confidence            799999999999999999877554

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.0029  Score=50.89  Aligned_cols=20  Identities=35%  Similarity=0.491  Sum_probs=18.5

Q ss_pred             EEEEcCCCChHHHHHHHHHc
Q 020527          111 VAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       111 ~~iiG~nGsGKSTLl~~l~g  130 (325)
                      ++|+|+.|+|||||++.+.+
T Consensus         8 i~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            88999999999999988875

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.66  E-value=0.0029  Score=50.93  Aligned_cols=21  Identities=38%  Similarity=0.600  Sum_probs=18.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHc
Q 020527          110 VVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      .++++|.+|+|||||++.+.+
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999987774

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=95.66  E-value=0.003  Score=54.27  Aligned_cols=25  Identities=24%  Similarity=0.337  Sum_probs=21.8

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          108 NEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       108 Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      ..-+.+.||+|||||++.+.|+..+
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~~~   69 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAGEA   69 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHHHc
Confidence            3457899999999999999999865

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.65  E-value=0.0028  Score=50.34  Aligned_cols=21  Identities=24%  Similarity=0.544  Sum_probs=19.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHc
Q 020527          110 VVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      .++|+|+.|+|||||++.+.+
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            388999999999999998875

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.62  E-value=0.0032  Score=49.94  Aligned_cols=23  Identities=26%  Similarity=0.436  Sum_probs=19.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++++|+.|+|||||++.+.+..
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~~~   25 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGGVE   25 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC-
T ss_pred             EEEEECCCCcCHHHHHHHHhCCc
Confidence            37899999999999999988753

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=95.61  E-value=0.0032  Score=52.43  Aligned_cols=26  Identities=38%  Similarity=0.530  Sum_probs=20.4

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      ...++.++||+|+||||.+-=|+..+
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~~   34 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALYY   34 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            35688999999999999886666544

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.0031  Score=49.78  Aligned_cols=22  Identities=27%  Similarity=0.413  Sum_probs=19.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++|+|+.|+|||||++-+.+-
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4889999999999999888753

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.61  E-value=0.0029  Score=53.11  Aligned_cols=22  Identities=23%  Similarity=0.478  Sum_probs=20.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      ++||+|...||||||++.|.+-
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCccHHHHHHHHHhh
Confidence            5999999999999999999874

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=95.59  E-value=0.0022  Score=53.57  Aligned_cols=25  Identities=40%  Similarity=0.664  Sum_probs=19.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHHcCCC
Q 020527          109 EVVAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       109 e~~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      .+++++||+|+||||.+-=|+..+.
T Consensus        10 ~vi~lvGptGvGKTTTiAKLA~~~~   34 (211)
T d2qy9a2          10 FVILMVGVNGVGKTTTIGKLARQFE   34 (211)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5799999999999998754454443

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.57  E-value=0.0031  Score=49.57  Aligned_cols=21  Identities=14%  Similarity=0.407  Sum_probs=18.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHc
Q 020527          110 VVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      .++++|..|+|||||++.+.+
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998875

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.53  E-value=0.0047  Score=49.17  Aligned_cols=24  Identities=33%  Similarity=0.588  Sum_probs=20.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      .++++|..|+|||||++.+.+...
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~~~~   28 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAGVHD   28 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCcC
Confidence            378999999999999999987543

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.51  E-value=0.0036  Score=49.20  Aligned_cols=20  Identities=20%  Similarity=0.365  Sum_probs=18.1

Q ss_pred             EEEEcCCCChHHHHHHHHHc
Q 020527          111 VAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       111 ~~iiG~nGsGKSTLl~~l~g  130 (325)
                      ++++|..|+|||||++.+..
T Consensus         5 v~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987764

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=95.51  E-value=0.0027  Score=53.10  Aligned_cols=23  Identities=35%  Similarity=0.541  Sum_probs=18.0

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHH
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLL  129 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~  129 (325)
                      +..+++++||+|+||||.+-=|+
T Consensus        10 ~p~vi~lvGptGvGKTTTiAKLA   32 (213)
T d1vmaa2          10 PPFVIMVVGVNGTGKTTSCGKLA   32 (213)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            34588999999999999874444

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.49  E-value=0.0036  Score=49.42  Aligned_cols=20  Identities=30%  Similarity=0.468  Sum_probs=18.1

Q ss_pred             EEEEcCCCChHHHHHHHHHc
Q 020527          111 VAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       111 ~~iiG~nGsGKSTLl~~l~g  130 (325)
                      ++|+|.+|+|||||++.+.+
T Consensus         7 ivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987765

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=95.44  E-value=0.0023  Score=51.41  Aligned_cols=21  Identities=38%  Similarity=0.596  Sum_probs=18.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHc
Q 020527          110 VVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      .++++|++|+|||||++.+.+
T Consensus        19 KI~lvG~~~vGKTsLi~~l~~   39 (182)
T d1moza_          19 RILILGLDGAGKTTILYRLQI   39 (182)
T ss_dssp             EEEEEEETTSSHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            478999999999999998754

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.0045  Score=49.23  Aligned_cols=20  Identities=35%  Similarity=0.602  Sum_probs=17.8

Q ss_pred             EEEEcCCCChHHHHHHHHHc
Q 020527          111 VAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       111 ~~iiG~nGsGKSTLl~~l~g  130 (325)
                      ++++|++|+|||||++.+..
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999977654

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.42  E-value=0.0072  Score=47.75  Aligned_cols=21  Identities=43%  Similarity=0.589  Sum_probs=18.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHc
Q 020527          110 VVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      .++++|+.|+|||||++-+.+
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            378999999999999988875

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.42  E-value=0.007  Score=48.49  Aligned_cols=21  Identities=29%  Similarity=0.532  Sum_probs=18.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHc
Q 020527          110 VVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      .++++|+.|+|||||++.+.+
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~   27 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLT   27 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            588999999999999997765

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=95.41  E-value=0.0041  Score=54.30  Aligned_cols=31  Identities=16%  Similarity=0.160  Sum_probs=27.5

Q ss_pred             EEeeCCcEEEEEcCCCChHHHHHHHHHcCCC
Q 020527          103 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       103 l~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      +.|.+|+..+|+|++|+|||||+..|+.-..
T Consensus        38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~   68 (289)
T d1xpua3          38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA   68 (289)
T ss_dssp             SCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             ccccCCCeeeEeCCCCCCHHHHHHHHHHHHh
Confidence            4789999999999999999999999987543

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.41  E-value=0.0034  Score=53.55  Aligned_cols=22  Identities=23%  Similarity=0.280  Sum_probs=19.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      -+.+.||.|||||++.+.|+..
T Consensus        42 ~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          42 SVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhhc
Confidence            4789999999999999999863

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.41  E-value=0.004  Score=49.15  Aligned_cols=21  Identities=29%  Similarity=0.493  Sum_probs=18.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHc
Q 020527          110 VVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      .++|+|.+|+|||||++-+..
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999988764

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.41  E-value=0.0038  Score=49.81  Aligned_cols=22  Identities=23%  Similarity=0.280  Sum_probs=18.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .++|+|++|+|||||++.+.+-
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999887753

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.40  E-value=0.0035  Score=57.38  Aligned_cols=28  Identities=29%  Similarity=0.412  Sum_probs=23.7

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcCCC
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      .++-.+.+.||.||||||++..+.....
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~  183 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELN  183 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhhhc
Confidence            3456899999999999999999987654

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.38  E-value=0.0041  Score=50.79  Aligned_cols=24  Identities=38%  Similarity=0.660  Sum_probs=20.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      +++|-|.-||||||+++.|..-+.
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~   25 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            578999999999999999986553

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.32  E-value=0.0043  Score=54.21  Aligned_cols=22  Identities=27%  Similarity=0.268  Sum_probs=19.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      ++||-|+.|||||||.+.|.-.
T Consensus        29 iIGi~G~qGSGKSTl~~~l~~~   50 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTSIQIYNH   50 (286)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHH
Confidence            7899999999999999877543

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.31  E-value=0.004  Score=51.76  Aligned_cols=44  Identities=14%  Similarity=0.293  Sum_probs=30.2

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHH
Q 020527          235 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI  283 (325)
Q Consensus       235 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~  283 (325)
                      +.+++++||.- .+....+..++..+....    ....+++++++.+-+
T Consensus       101 ~~kviiiDe~d-~~~~~~~~~ll~~~e~~~----~~~~~i~~~~~~~~i  144 (224)
T d1sxjb2         101 KHKIVILDEAD-SMTAGAQQALRRTMELYS----NSTRFAFACNQSNKI  144 (224)
T ss_dssp             CCEEEEEESGG-GSCHHHHHTTHHHHHHTT----TTEEEEEEESCGGGS
T ss_pred             ceEEEEEeccc-ccchhHHHHHhhhccccc----cceeeeeccCchhhh
Confidence            46799999975 455566666666666542    356778888887654

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.31  E-value=0.0044  Score=49.47  Aligned_cols=20  Identities=35%  Similarity=0.552  Sum_probs=18.6

Q ss_pred             EEEEcCCCChHHHHHHHHHc
Q 020527          111 VAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       111 ~~iiG~nGsGKSTLl~~l~g  130 (325)
                      ++++|..|+|||||++.+.+
T Consensus        10 i~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999998875

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.31  E-value=0.0045  Score=48.86  Aligned_cols=20  Identities=25%  Similarity=0.355  Sum_probs=18.0

Q ss_pred             EEEEcCCCChHHHHHHHHHc
Q 020527          111 VAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       111 ~~iiG~nGsGKSTLl~~l~g  130 (325)
                      ++|+|.+|+|||||++-+.+
T Consensus         6 ivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999997764

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.27  E-value=0.0043  Score=55.14  Aligned_cols=24  Identities=42%  Similarity=0.516  Sum_probs=21.0

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHcC
Q 020527          108 NEVVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       108 Ge~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      .-++||.||.|||||||+..+...
T Consensus        51 ~~~igitG~pGaGKSTli~~l~~~   74 (323)
T d2qm8a1          51 AIRVGITGVPGVGKSTTIDALGSL   74 (323)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             ceEEeeeCCCCCCHHHHHHHHHHH
Confidence            457999999999999999888754

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.27  E-value=0.0091  Score=47.23  Aligned_cols=21  Identities=29%  Similarity=0.493  Sum_probs=18.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHc
Q 020527          110 VVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      .++++|..|+|||||++-+.+
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            377999999999999998765

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.23  E-value=0.0048  Score=49.09  Aligned_cols=21  Identities=29%  Similarity=0.499  Sum_probs=18.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHc
Q 020527          110 VVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      .++|+|..|+|||||++-+..
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999987764

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.22  E-value=0.0043  Score=53.43  Aligned_cols=28  Identities=18%  Similarity=0.303  Sum_probs=23.6

Q ss_pred             eeCCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          105 IEANEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       105 i~~Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      +++..-+.|.||+|+|||+|++.+++.+
T Consensus        38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          38 MTPSKGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CCCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CCCCCeEEEECCCCCcchhHHHHHHHHh
Confidence            3444558899999999999999999876

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=95.22  E-value=0.0038  Score=54.04  Aligned_cols=48  Identities=31%  Similarity=0.402  Sum_probs=31.7

Q ss_pred             EEEEEcCCCChHHHHHHHHH---cCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527          110 VVAIVGLSGSGKSTFVNLLL---RLYEPSDGQIYIDGFPLTDLDIRWLREKIG  159 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~---gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~  159 (325)
                      .++|+|+.|||||||+..|+   |.. ...|++. +|..+.++.+.+..++++
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~-~~~g~v~-~g~~~~D~~~~E~~r~~t   54 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAK-ERRGRVE-EGTTTTDYTPEAKLHRTT   54 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCGG-GTCCSSCCSHHHHHTTSC
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCc-hhhccch-hccccccchHHHHHhCCe
Confidence            47999999999999999884   433 2445553 454555555555555543

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.22  E-value=0.0047  Score=50.20  Aligned_cols=20  Identities=30%  Similarity=0.461  Sum_probs=18.3

Q ss_pred             EEEEcCCCChHHHHHHHHHc
Q 020527          111 VAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       111 ~~iiG~nGsGKSTLl~~l~g  130 (325)
                      ++|+|+.|+|||||++.+.+
T Consensus         9 ivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhh
Confidence            88999999999999997774

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.21  E-value=0.0048  Score=48.99  Aligned_cols=20  Identities=25%  Similarity=0.634  Sum_probs=18.3

Q ss_pred             EEEEcCCCChHHHHHHHHHc
Q 020527          111 VAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       111 ~~iiG~nGsGKSTLl~~l~g  130 (325)
                      ++++|..|+|||||++-+.+
T Consensus         8 I~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999998764

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.19  E-value=0.0051  Score=48.61  Aligned_cols=21  Identities=24%  Similarity=0.406  Sum_probs=18.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHc
Q 020527          110 VVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      .++++|..|+|||||++-+.+
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999987664

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.17  E-value=0.0078  Score=48.32  Aligned_cols=32  Identities=34%  Similarity=0.292  Sum_probs=24.1

Q ss_pred             ceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHH
Q 020527           97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL  129 (325)
Q Consensus        97 iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~  129 (325)
                      .++...+.+. |.-+.|.|+||+|||||.-.+.
T Consensus         5 ~~H~~~v~~~-g~gvli~G~sg~GKS~la~~l~   36 (169)
T d1ko7a2           5 SLHGVLVDVY-GVGVLITGDSGIGKSETALELI   36 (169)
T ss_dssp             EEESEEEEET-TEEEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEEEEEC-CEEEEEEeCCCCCHHHHHHHHH
Confidence            4555555444 7889999999999999885554

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.16  E-value=0.0052  Score=49.31  Aligned_cols=21  Identities=19%  Similarity=0.249  Sum_probs=18.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHc
Q 020527          110 VVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      .++|+|.+|+|||||++.+..
T Consensus         7 KivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999987664

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=95.13  E-value=0.0048  Score=52.66  Aligned_cols=21  Identities=29%  Similarity=0.441  Sum_probs=19.6

Q ss_pred             EEEEcCCCChHHHHHHHHHcC
Q 020527          111 VAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       111 ~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      +.+.||.|+|||+|.+.|+..
T Consensus        45 iLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          45 VLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEecCCCCChhHHHHHHHHH
Confidence            789999999999999999974

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=95.13  E-value=0.0032  Score=52.57  Aligned_cols=25  Identities=32%  Similarity=0.493  Sum_probs=15.3

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHcC
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      ...+++++||+|+||||.+-=|+..
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA~~   35 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLAYF   35 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3467999999999999987444433

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.07  E-value=0.0052  Score=50.95  Aligned_cols=44  Identities=18%  Similarity=0.348  Sum_probs=31.5

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHH
Q 020527          235 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI  283 (325)
Q Consensus       235 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~  283 (325)
                      +.+++++||. ..+.......++..+.+..    ...-++++|++...+
T Consensus        99 ~~kiiiiDe~-d~~~~~~~~~Ll~~le~~~----~~~~~~~~~~~~~~i  142 (227)
T d1sxjc2          99 GFKLIILDEA-DAMTNAAQNALRRVIERYT----KNTRFCVLANYAHKL  142 (227)
T ss_dssp             SCEEEEETTG-GGSCHHHHHHHHHHHHHTT----TTEEEEEEESCGGGS
T ss_pred             CeEEEEEecc-ccchhhHHHHHHHHhhhcc----cceeeccccCcHHHh
Confidence            3479999997 4677888888888887763    345667777776543

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=95.06  E-value=0.0038  Score=49.65  Aligned_cols=23  Identities=26%  Similarity=0.343  Sum_probs=19.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .+.++|++|+|||||++.+.+-.
T Consensus        14 kIvlvG~~~vGKTSli~rl~~~~   36 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKLKLGQ   36 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHTTCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999887533

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.00  E-value=0.0037  Score=49.69  Aligned_cols=21  Identities=43%  Similarity=0.670  Sum_probs=17.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHc
Q 020527          110 VVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      .++++|+.|+|||||++.+..
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999987643

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.00  E-value=0.0082  Score=47.39  Aligned_cols=21  Identities=29%  Similarity=0.485  Sum_probs=18.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHc
Q 020527          110 VVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      .++++|..|+|||||++-+..
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999988774

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.91  E-value=0.0059  Score=48.78  Aligned_cols=30  Identities=30%  Similarity=0.443  Sum_probs=24.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCCCCCCCeE
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQI  139 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I  139 (325)
                      .+.++|..|+|||||++-+..-..|+.|-.
T Consensus         4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~   33 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIV   33 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence            478999999999999998876666777743

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=94.90  E-value=0.006  Score=52.56  Aligned_cols=42  Identities=21%  Similarity=0.283  Sum_probs=30.7

Q ss_pred             EeeCCcEEEEEcCCCChHHHHHHHHHcCC-CCCCCeEEECCEe
Q 020527          104 TIEANEVVAIVGLSGSGKSTFVNLLLRLY-EPSDGQIYIDGFP  145 (325)
Q Consensus       104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~-~~~~G~I~i~g~~  145 (325)
                      =+++|.++-|.||+|||||||.-.++.-. ++..--+++|.+.
T Consensus        50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~   92 (263)
T d1u94a1          50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH   92 (263)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccc
Confidence            37899999999999999999986655444 4433346666543

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.88  E-value=0.0042  Score=49.39  Aligned_cols=21  Identities=24%  Similarity=0.365  Sum_probs=9.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHc
Q 020527          110 VVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      .++++|..|+|||||++.+++
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEECCCCC-----------
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            388999999999999986654

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=94.87  E-value=0.0031  Score=55.92  Aligned_cols=26  Identities=38%  Similarity=0.408  Sum_probs=23.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHcCCCC
Q 020527          109 EVVAIVGLSGSGKSTFVNLLLRLYEP  134 (325)
Q Consensus       109 e~~~iiG~nGsGKSTLl~~l~gl~~~  134 (325)
                      --+.|+||.|+|||||+|.+++++||
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~iLp~   54 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAALLPE   54 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred             CeEEEECCCCccHHHHHHHHHHhCCC
Confidence            35789999999999999999999986

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.86  E-value=0.0072  Score=47.76  Aligned_cols=20  Identities=35%  Similarity=0.486  Sum_probs=17.9

Q ss_pred             EEEEcCCCChHHHHHHHHHc
Q 020527          111 VAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       111 ~~iiG~nGsGKSTLl~~l~g  130 (325)
                      ++++|+.|+|||||++.+.+
T Consensus         9 i~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999987654

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.86  E-value=0.0074  Score=50.23  Aligned_cols=28  Identities=29%  Similarity=0.338  Sum_probs=22.9

Q ss_pred             EEEEEcCCCChHHHHHHHHH-cCCCCCCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLL-RLYEPSDG  137 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~-gl~~~~~G  137 (325)
                      .+.|+|.+|+|||||++-+. +-..|+-|
T Consensus         8 KilllG~~~vGKTsll~~~~~~~~~pTiG   36 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMRILHVVLTSG   36 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence            57899999999999997663 55567777

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=94.85  E-value=0.0072  Score=47.80  Aligned_cols=21  Identities=33%  Similarity=0.482  Sum_probs=18.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHc
Q 020527          110 VVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      .++|+|..|+|||||++.+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            578999999999999988764

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.79  E-value=0.0073  Score=48.64  Aligned_cols=28  Identities=32%  Similarity=0.542  Sum_probs=22.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHc--CCCCCCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLR--LYEPSDG  137 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~g--l~~~~~G  137 (325)
                      .+.|+|.+|+|||||++-+.-  -+.|+-|
T Consensus         4 KivllG~~~vGKTsll~r~~f~~~~~pTiG   33 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG   33 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence            478999999999999988742  2458888

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.78  E-value=0.0081  Score=51.34  Aligned_cols=22  Identities=18%  Similarity=0.347  Sum_probs=20.1

Q ss_pred             EEEEcCCCChHHHHHHHHHcCC
Q 020527          111 VAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       111 ~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      +.|.||+|+|||+|++.++...
T Consensus        41 iLL~GppGtGKT~l~~ala~~~   62 (258)
T d1e32a2          41 ILLYGPPGTGKTLIARAVANET   62 (258)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEecCCCCCchHHHHHHHHHh
Confidence            7899999999999999999853

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.75  E-value=0.008  Score=47.32  Aligned_cols=21  Identities=24%  Similarity=0.504  Sum_probs=18.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHc
Q 020527          110 VVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      .++++|.+|+|||||++-+..
T Consensus         5 KivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            478999999999999987764

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.74  E-value=0.008  Score=48.33  Aligned_cols=21  Identities=19%  Similarity=0.268  Sum_probs=18.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHc
Q 020527          110 VVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      .++|+|..|+|||||++.+..
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            388999999999999987663

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=94.71  E-value=0.0058  Score=56.66  Aligned_cols=35  Identities=20%  Similarity=0.390  Sum_probs=26.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL  146 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i  146 (325)
                      -+.++||+|||||-|.|.|++++...  -+..+...+
T Consensus        51 NILliGPTGvGKTlLAr~LAk~l~VP--Fv~~daT~f   85 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAKLANAP--FIKVEATKF   85 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHTTCC--EEEEEGGGG
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCC--EEEeeccee
Confidence            47899999999999999999987432  455555443

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.59  E-value=0.009  Score=47.83  Aligned_cols=21  Identities=24%  Similarity=0.542  Sum_probs=17.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHc
Q 020527          110 VVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      .++++|.+|+|||||++-+..
T Consensus         4 KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999975553

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.57  E-value=0.0092  Score=49.90  Aligned_cols=21  Identities=24%  Similarity=0.547  Sum_probs=19.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHc
Q 020527          110 VVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      ++||.|+-||||||..+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            789999999999999999954

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=94.51  E-value=0.01  Score=48.11  Aligned_cols=22  Identities=27%  Similarity=0.548  Sum_probs=20.4

Q ss_pred             EEEEcCCCChHHHHHHHHHcCC
Q 020527          111 VAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       111 ~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      +||+|.-.+|||||++.|.|..
T Consensus         8 IaiiGhvd~GKSTL~~~L~g~~   29 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLTKALTGVW   29 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEeccCCcHHHHHHHHHhhh
Confidence            7999999999999999999864

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=94.46  E-value=0.0059  Score=51.62  Aligned_cols=23  Identities=22%  Similarity=0.444  Sum_probs=19.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      ++.|.||.|+||||+++.++..+
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHH
Confidence            45667999999999999998765

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.39  E-value=0.01  Score=47.85  Aligned_cols=21  Identities=19%  Similarity=0.249  Sum_probs=17.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHc
Q 020527          110 VVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      .++++|+.|+|||||++-+..
T Consensus         5 KvvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999976653

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.39  E-value=0.0087  Score=51.90  Aligned_cols=24  Identities=50%  Similarity=0.513  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHcCC
Q 020527          109 EVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       109 e~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      -+++|+||-++||||||+.|.|-.
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCC
Confidence            379999999999999999999864

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.29  E-value=0.0097  Score=51.40  Aligned_cols=42  Identities=24%  Similarity=0.308  Sum_probs=31.1

Q ss_pred             EeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCe-EEECCEe
Q 020527          104 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ-IYIDGFP  145 (325)
Q Consensus       104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~-I~i~g~~  145 (325)
                      -++.|.++-|.||+|||||||+-.++....-..|. |+||.+.
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~   98 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH   98 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc
Confidence            37899999999999999999976666544444555 5555543

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.17  E-value=0.012  Score=50.83  Aligned_cols=39  Identities=15%  Similarity=0.248  Sum_probs=29.4

Q ss_pred             EEeeCCcEEEEEcCCCChHHHHHHHHHcC-CCCCCCeEEE
Q 020527          103 LTIEANEVVAIVGLSGSGKSTFVNLLLRL-YEPSDGQIYI  141 (325)
Q Consensus       103 l~i~~Ge~~~iiG~nGsGKSTLl~~l~gl-~~~~~G~I~i  141 (325)
                      +.+-+|+..+|+|++|+|||||+..++.- .+.+.+-+.|
T Consensus        63 ~pigkGQr~~If~~~g~GKt~l~~~i~~~~~~~~~~v~V~  102 (276)
T d2jdid3          63 APYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF  102 (276)
T ss_dssp             SCEETTCEEEEEECTTSSHHHHHHHHHHHHTTTCSSEEEE
T ss_pred             ccccCCCEEEeeCCCCCCHHHHHHHHHHHHHhhCCCeEEE
Confidence            47899999999999999999998777643 3334443333

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=94.12  E-value=0.011  Score=50.93  Aligned_cols=40  Identities=23%  Similarity=0.380  Sum_probs=30.4

Q ss_pred             eeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCe-EEECCE
Q 020527          105 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ-IYIDGF  144 (325)
Q Consensus       105 i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~-I~i~g~  144 (325)
                      ++.|.++-|.||+|||||||.-.++...+-..|. ++||.+
T Consensus        54 ip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE   94 (268)
T d1xp8a1          54 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE   94 (268)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             ccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECC
Confidence            7899999999999999999997777655433343 445443

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.86  E-value=0.015  Score=48.45  Aligned_cols=25  Identities=44%  Similarity=0.611  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCChHHHHHHHHHcCCC
Q 020527          109 EVVAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       109 e~~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      .+++|=|+-||||||+++.|.--+.
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~l~   27 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHh
Confidence            4789999999999999999987553

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.85  E-value=0.017  Score=49.99  Aligned_cols=23  Identities=26%  Similarity=0.371  Sum_probs=21.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++++|.-.||||||+++|+|.-
T Consensus        28 ~ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          28 QIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             eEEEEcCCCCCHHHHHHHHhCCC
Confidence            37899999999999999999965

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=93.84  E-value=0.018  Score=50.03  Aligned_cols=23  Identities=26%  Similarity=0.398  Sum_probs=21.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .++++|.-.||||||+++|+|.-
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~~   48 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGRD   48 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             eEEEEeCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999975

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.83  E-value=0.015  Score=51.16  Aligned_cols=34  Identities=18%  Similarity=0.144  Sum_probs=25.7

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECC
Q 020527          108 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG  143 (325)
Q Consensus       108 Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g  143 (325)
                      ...+.++||+|+|||.|.+.|+..+.  .--|.+|-
T Consensus        52 ~~~~lf~Gp~GvGKT~lak~la~~l~--~~~i~~d~   85 (315)
T d1r6bx3          52 VGSFLFAGPTGVGKTEVTVQLSKALG--IELLRFDM   85 (315)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHT--CEEEEEEG
T ss_pred             ceEEEEECCCcchhHHHHHHHHhhcc--CCeeEecc
Confidence            33578999999999999999998763  22444443

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.55  E-value=0.017  Score=50.63  Aligned_cols=23  Identities=30%  Similarity=0.408  Sum_probs=19.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .+||+|..-+|||||++.|.|--
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~~   24 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLVD   24 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC--
T ss_pred             cEeEECCCCCCHHHHHHHHHCCC
Confidence            38999999999999999998863

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=93.51  E-value=0.018  Score=51.70  Aligned_cols=30  Identities=30%  Similarity=0.329  Sum_probs=26.9

Q ss_pred             EeeCCcEEEEEcCCCChHHHHHHHHHcCCC
Q 020527          104 TIEANEVVAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      .++++..+.+.||.|+||||+.+.|++.+.
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            457788999999999999999999999874

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.45  E-value=0.018  Score=47.27  Aligned_cols=21  Identities=29%  Similarity=0.366  Sum_probs=18.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHc
Q 020527          110 VVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      -++|+|.-+||||||+..|..
T Consensus         5 ni~iiGhvd~GKSTL~~~Ll~   25 (204)
T d2c78a3           5 NVGTIGHVDHGKTTLTAALTY   25 (204)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            379999999999999999864

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=93.44  E-value=0.019  Score=49.94  Aligned_cols=23  Identities=35%  Similarity=0.514  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCChHHHHHHHHHcC
Q 020527          109 EVVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       109 e~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      =.+||||..-||||||+++|++-
T Consensus        11 ~kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1          11 LKTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHCC
Confidence            35999999999999999999975

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=93.36  E-value=0.018  Score=50.86  Aligned_cols=34  Identities=21%  Similarity=0.231  Sum_probs=25.4

Q ss_pred             eeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527           98 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus        98 L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      .+-+-...++| ++.+.||.|+|||.|.+.|++..
T Consensus       114 ~~~~~~~~~~g-~~l~~G~pG~GKT~la~ala~~~  147 (321)
T d1w44a_         114 AEFGGHRYASG-MVIVTGKGNSGKTPLVHALGEAL  147 (321)
T ss_dssp             EEETTEEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred             HHHhhcccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence            33334555655 56668999999999999999864

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.28  E-value=0.022  Score=45.42  Aligned_cols=28  Identities=32%  Similarity=0.539  Sum_probs=21.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC---CCCCCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL---YEPSDG  137 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl---~~~~~G  137 (325)
                      .+.++|..|+|||||++-+..-   +.|+-|
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~~~~~~pTiG   34 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRIIHGSGVPTTG   34 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCceee
Confidence            4789999999999999887533   345555

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.89  E-value=0.024  Score=48.93  Aligned_cols=29  Identities=21%  Similarity=0.287  Sum_probs=20.4

Q ss_pred             EEEEEcCCCChHHHHHHHHH---cCCCCCCCeE
Q 020527          110 VVAIVGLSGSGKSTFVNLLL---RLYEPSDGQI  139 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~---gl~~~~~G~I  139 (325)
                      -++|+|+.|||||||...|+   |... ..|++
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g~~~-~~g~v   39 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTGRIH-KIGEV   39 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTSSC-C----
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhcCccc-cccce
Confidence            48999999999999998884   5544 34555

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=92.86  E-value=0.03  Score=45.66  Aligned_cols=24  Identities=25%  Similarity=0.522  Sum_probs=21.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      .+||+|.-.+|||||++.|.|...
T Consensus        10 ni~iiGhVd~GKSTL~~~L~~~~~   33 (205)
T d2qn6a3          10 NIGVVGHVDHGKTTLVQAITGIWT   33 (205)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred             EEEEEEccCCcHHHHHHHHHhhhc
Confidence            589999999999999999998654

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=92.81  E-value=0.024  Score=48.92  Aligned_cols=44  Identities=9%  Similarity=0.110  Sum_probs=31.9

Q ss_pred             ceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEE
Q 020527           97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI  141 (325)
Q Consensus        97 iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i  141 (325)
                      +++-+ +.|-+|+..+|+|++|+|||+|+..+..-..-+...+.+
T Consensus        57 ~ID~l-~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~~v~V~  100 (276)
T d1fx0a3          57 AIDAM-IPVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVY  100 (276)
T ss_dssp             TTTTT-SCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCEEEE
T ss_pred             EEecc-ccccCCceEeeccCCCCChHHHHHHHHhhhcccCceeee
Confidence            44443 478999999999999999999998665544444444333

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.73  E-value=0.022  Score=47.41  Aligned_cols=22  Identities=32%  Similarity=0.599  Sum_probs=19.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRL  131 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl  131 (325)
                      ++.|.|.=|||||||++-++.-
T Consensus         5 v~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc
Confidence            6789999999999999988764

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.62  E-value=0.029  Score=46.32  Aligned_cols=44  Identities=16%  Similarity=0.250  Sum_probs=32.9

Q ss_pred             cCCCCEEEEeCCCCC-CCHHHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 020527          233 LRDPAILLLDEATSA-LDSESEHYVKGVLHALRNDCKTKRTVIVIAHR  279 (325)
Q Consensus       233 ~~~p~llllDEPts~-LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~  279 (325)
                      +.+.++|++|+-=.= =++..+..+..++..+.+   .|+.+|+++..
T Consensus        95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~---~~~~iiits~~  139 (213)
T d1l8qa2          95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL---LEKQIILASDR  139 (213)
T ss_dssp             HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH---TTCEEEEEESS
T ss_pred             HhhccchhhhhhhhhcCchHHHHHHHHHHHHHhh---ccceEEEecCC
Confidence            458999999987442 357778889999988865   36677777764

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=92.42  E-value=0.029  Score=50.80  Aligned_cols=40  Identities=25%  Similarity=0.207  Sum_probs=27.5

Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHH
Q 020527          238 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI  283 (325)
Q Consensus       238 llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~  283 (325)
                      ++++||.-+-.....   +.+++.+.+   +.|..+++++.+++.+
T Consensus       279 ~l~lDE~~~~~~~~~---l~~~l~~~R---k~Gv~~~l~~Qs~~ql  318 (433)
T d1e9ra_         279 WLFIDELASLEKLAS---LADALTKGR---KAGLRVVAGLQSTSQL  318 (433)
T ss_dssp             EEEESCGGGSCBCSS---HHHHHHHCT---TTTEEEEEEESCHHHH
T ss_pred             EEEechHhhhcccHH---HHHHHHHhC---CCCceEEEEeccHHHH
Confidence            678899765444222   445566664   3699999999998765

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.26  E-value=0.034  Score=46.43  Aligned_cols=43  Identities=14%  Similarity=0.143  Sum_probs=32.9

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHH
Q 020527          236 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI  283 (325)
Q Consensus       236 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~  283 (325)
                      .+++|+||.= .|+...+..++..+++..    .+..+|++|++.+-+
T Consensus       116 ~kviiIde~d-~l~~~~q~~Llk~lE~~~----~~~~~il~tn~~~~i  158 (239)
T d1njfa_         116 FKVYLIDEVH-MLSRHSFNALLKTLEEPP----EHVKFLLATTDPQKL  158 (239)
T ss_dssp             SEEEEEETGG-GSCHHHHHHHHHHHHSCC----TTEEEEEEESCGGGS
T ss_pred             CEEEEEECcc-cCCHHHHHHHHHHHhcCC----CCeEEEEEcCCcccc
Confidence            4699999995 488888877777776542    467899999988754

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=92.16  E-value=0.038  Score=47.42  Aligned_cols=34  Identities=38%  Similarity=0.541  Sum_probs=27.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC-----------CCCCCeEEECC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY-----------EPSDGQIYIDG  143 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~-----------~~~~G~I~i~g  143 (325)
                      .+||||-.-+|||||++.|++--           .|.-|.|.+.+
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d   48 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD   48 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred             eEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEeccc
Confidence            58999999999999999999653           34568776543

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.07  E-value=0.04  Score=47.27  Aligned_cols=23  Identities=30%  Similarity=0.388  Sum_probs=20.4

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHc
Q 020527          108 NEVVAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       108 Ge~~~iiG~nGsGKSTLl~~l~g  130 (325)
                      ..+++|.|.-|.|||||.+.+..
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999998764

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=91.88  E-value=0.041  Score=45.04  Aligned_cols=44  Identities=7%  Similarity=0.136  Sum_probs=31.6

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHH
Q 020527          235 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI  283 (325)
Q Consensus       235 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~  283 (325)
                      +.+++|+||. -.|...++..+++.+++-.    .+.-+|++|++++-+
T Consensus       108 ~~kviIide~-d~l~~~a~n~Llk~lEep~----~~~~fIl~t~~~~~l  151 (207)
T d1a5ta2         108 GAKVVWVTDA-ALLTDAAANALLKTLEEPP----AETWFFLATREPERL  151 (207)
T ss_dssp             SCEEEEESCG-GGBCHHHHHHHHHHHTSCC----TTEEEEEEESCGGGS
T ss_pred             ccceEEechh-hhhhhhhhHHHHHHHHhhc----ccceeeeeecChhhh
Confidence            3789999987 4566777777777776542    356678899998743

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=91.64  E-value=0.069  Score=47.23  Aligned_cols=31  Identities=23%  Similarity=0.299  Sum_probs=24.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCCCCCCCeEE
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY  140 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~  140 (325)
                      .+.|=|+-||||||+++.|..-+....+.+.
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~   38 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLY   38 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGGGCSSCEEE
T ss_pred             EEEEECCccCCHHHHHHHHHHHhccCCCeEE
Confidence            4778899999999999999987765443333

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=91.29  E-value=0.042  Score=49.24  Aligned_cols=35  Identities=20%  Similarity=0.344  Sum_probs=25.5

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECC
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG  143 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g  143 (325)
                      +++. +.++||+|+|||-|.|.|+.+..  .--|.+|-
T Consensus        67 p~~n-iLfiGPTGvGKTElAk~LA~~~~--~~~ir~D~  101 (364)
T d1um8a_          67 SKSN-ILLIGPTGSGKTLMAQTLAKHLD--IPIAISDA  101 (364)
T ss_dssp             CCCC-EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEG
T ss_pred             CCcc-eeeeCCCCccHHHHHHHHHhhcc--cceeehhh
Confidence            4454 56889999999999999998763  23444443

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.07  E-value=0.034  Score=48.21  Aligned_cols=27  Identities=19%  Similarity=0.250  Sum_probs=23.9

Q ss_pred             EEeeCCcEEEEEcCCCChHHHHHHHHH
Q 020527          103 LTIEANEVVAIVGLSGSGKSTFVNLLL  129 (325)
Q Consensus       103 l~i~~Ge~~~iiG~nGsGKSTLl~~l~  129 (325)
                      +.+-+|+..+|+|++|+|||||+.-++
T Consensus        63 ~pig~GQr~~If~~~g~GKt~ll~~~~   89 (285)
T d2jdia3          63 VPIGRGQRELIIGDRQTGKTSIAIDTI   89 (285)
T ss_dssp             SCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred             cCccCCCEEEeecCCCCChHHHHHHHH
Confidence            579999999999999999999986544

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=91.05  E-value=0.056  Score=44.00  Aligned_cols=22  Identities=23%  Similarity=0.475  Sum_probs=19.9

Q ss_pred             EEEEcCCCChHHHHHHHHHcCC
Q 020527          111 VAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       111 ~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      +||+|.-++|||||++.|.+..
T Consensus         6 i~iiGHvd~GKSTL~~~l~~~~   27 (196)
T d1d2ea3           6 VGTIGHVDHGKTTLTAAITKIL   27 (196)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHHH
Confidence            7999999999999999998754

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=90.83  E-value=0.054  Score=47.50  Aligned_cols=36  Identities=22%  Similarity=0.271  Sum_probs=26.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCCC-CCCCeEEECCEe
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLYE-PSDGQIYIDGFP  145 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~~-~~~G~I~i~g~~  145 (325)
                      .+.++||+|+|||.|.+.|+-.+. ....-+.+|...
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~   91 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTE   91 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTT
T ss_pred             EEEEECCCcchHHHHHHHHHHHhcCCCcceEEEeccc
Confidence            577999999999999999998752 233445565433

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=90.73  E-value=0.065  Score=43.68  Aligned_cols=23  Identities=26%  Similarity=0.378  Sum_probs=20.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      -+.|+||+|.|||+++.-++.-+
T Consensus        45 n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHHHH
Confidence            46899999999999999988654

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=90.64  E-value=0.076  Score=46.33  Aligned_cols=24  Identities=38%  Similarity=0.684  Sum_probs=19.5

Q ss_pred             eEEe-eCCcEEEEEcCCCChHHHHH
Q 020527          102 CLTI-EANEVVAIVGLSGSGKSTFV  125 (325)
Q Consensus       102 sl~i-~~Ge~~~iiG~nGsGKSTLl  125 (325)
                      |-++ +.|++..+.|-||+|||||-
T Consensus         7 san~~~~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1           7 SANVGEKGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEEECTTSCEEEEECSTTSSHHHHH
T ss_pred             ccccCCCCCEEEEEccCCCCcccce
Confidence            3444 45899999999999999975

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=90.59  E-value=0.078  Score=45.41  Aligned_cols=23  Identities=30%  Similarity=0.297  Sum_probs=20.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      -+.||||+|+|||+++.-++..+
T Consensus        41 n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          41 NPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEECCCCCcHHHHHHHHHHHH
Confidence            57899999999999999888654

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=90.53  E-value=0.024  Score=42.28  Aligned_cols=21  Identities=14%  Similarity=0.177  Sum_probs=18.1

Q ss_pred             eeCCcEEEEEcCCCChHHHHH
Q 020527          105 IEANEVVAIVGLSGSGKSTFV  125 (325)
Q Consensus       105 i~~Ge~~~iiG~nGsGKSTLl  125 (325)
                      +++|+.+.|.+|.|||||+..
T Consensus         4 l~~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTTH
T ss_pred             HHcCCcEEEEcCCCCChhHHH
Confidence            467999999999999999544

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=90.44  E-value=0.086  Score=46.15  Aligned_cols=24  Identities=33%  Similarity=0.628  Sum_probs=19.3

Q ss_pred             eEEee-CCcEEEEEcCCCChHHHHH
Q 020527          102 CLTIE-ANEVVAIVGLSGSGKSTFV  125 (325)
Q Consensus       102 sl~i~-~Ge~~~iiG~nGsGKSTLl  125 (325)
                      |-++. .|++..+.|.||+|||||-
T Consensus         7 san~~~~~~valffGLSGTGKTTLs   31 (318)
T d1j3ba1           7 SANVGKEGDVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEECTTCCEEEEEECTTSCHHHHT
T ss_pred             ccccCCCCCEEEEEccCCCCccccc
Confidence            33444 4899999999999999974

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=89.99  E-value=0.077  Score=46.84  Aligned_cols=33  Identities=21%  Similarity=0.302  Sum_probs=25.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCCCCCCCeEEEC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID  142 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~  142 (325)
                      .+.|=|+=||||||+++.|.-.+......+.+-
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~~   39 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHFAITPNRILLI   39 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTTTTSGGGEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhhcCCceEEE
Confidence            478999999999999999998776543344443

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=89.75  E-value=0.082  Score=43.69  Aligned_cols=38  Identities=11%  Similarity=0.234  Sum_probs=25.3

Q ss_pred             HHHHHHHHcCCCCEEE----EeCCCCCCCHHHHHHHHHHHHHh
Q 020527          225 RIAIARAILRDPAILL----LDEATSALDSESEHYVKGVLHAL  263 (325)
Q Consensus       225 Rv~iAral~~~p~lll----lDEPts~LD~~~~~~i~~~l~~l  263 (325)
                      .+.+++++ ..+++++    +|.+....|....+.+.+.+..+
T Consensus       132 ~l~~~~~~-~~~~iIv~iNK~D~~~~~~~~~~~~~v~~~i~~~  173 (224)
T d1jnya3         132 HIILAKTM-GLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKF  173 (224)
T ss_dssp             HHHHHHHT-TCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHh-CCCceEEEEEcccCCCccccHHHHHHHHHHHHhH
Confidence            45666655 5666776    68887777876666666666654

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=89.61  E-value=0.17  Score=43.06  Aligned_cols=56  Identities=11%  Similarity=0.163  Sum_probs=36.4

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhc-ceEEEccCCc
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE-KIGFVGQEPQ  166 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~-~i~~v~Q~~~  166 (325)
                      ++--++.+.||.++|||||+++|..++ +..|.+  ++.. +......+.. ++.+. +++.
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~~l-g~~~~~--~~~~-~~f~l~~l~~k~~~~~-~e~~  158 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAHTV-PFYGCV--NWTN-ENFPFNDCVDKMVIWW-EEGK  158 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHS-SCEEEC--CTTC-SSCTTGGGSSCSEEEE-CSCC
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHHHh-cchhhc--cccC-CCccccccCCCEEEEE-eCCC
Confidence            555688999999999999999999988 454433  2221 2333444443 45444 5554

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=89.06  E-value=0.082  Score=46.62  Aligned_cols=24  Identities=42%  Similarity=0.436  Sum_probs=19.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCCC
Q 020527          110 VVAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      .++|=|+-||||||+++.|...+.
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l~   29 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALGS   29 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC---
T ss_pred             EEEEECCcCCCHHHHHHHHHHHhC
Confidence            478899999999999999987554

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=88.58  E-value=0.15  Score=44.62  Aligned_cols=19  Identities=42%  Similarity=0.758  Sum_probs=17.7

Q ss_pred             CCcEEEEEcCCCChHHHHH
Q 020527          107 ANEVVAIVGLSGSGKSTFV  125 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl  125 (325)
                      .|++..+.|-||+|||||-
T Consensus        13 ~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          13 QGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             TCCEEEEECCTTSSHHHHH
T ss_pred             CCCEEEEEccCCCCcccce
Confidence            6889999999999999997

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=88.39  E-value=0.13  Score=42.54  Aligned_cols=20  Identities=35%  Similarity=0.466  Sum_probs=18.2

Q ss_pred             EEEEcCCCChHHHHHHHHHc
Q 020527          111 VAIVGLSGSGKSTFVNLLLR  130 (325)
Q Consensus       111 ~~iiG~nGsGKSTLl~~l~g  130 (325)
                      ++++|.-.+|||||+..|+.
T Consensus        12 i~viGHVd~GKSTL~~~Ll~   31 (222)
T d1zunb3          12 FLTCGNVDDGKSTLIGRLLH   31 (222)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            78999999999999999953

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=88.26  E-value=0.23  Score=44.14  Aligned_cols=19  Identities=37%  Similarity=0.550  Sum_probs=17.1

Q ss_pred             CcEEEEEcCCCChHHHHHH
Q 020527          108 NEVVAIVGLSGSGKSTFVN  126 (325)
Q Consensus       108 Ge~~~iiG~nGsGKSTLl~  126 (325)
                      +.++.|.||.|+||||++.
T Consensus       163 ~~~~vI~G~pGTGKTt~i~  181 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVA  181 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHH
Confidence            6799999999999999874

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=87.36  E-value=0.1  Score=39.04  Aligned_cols=32  Identities=22%  Similarity=0.132  Sum_probs=23.4

Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh
Q 020527          232 ILRDPAILLLDEATSALDSESEHYVKGVLHALR  264 (325)
Q Consensus       232 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~  264 (325)
                      .+.+-+++|+||.= .+|..+...+...++.+.
T Consensus        91 ~~~~~~~vIiDE~H-~~~~~~~~~~~~~l~~~~  122 (136)
T d1a1va1          91 SGGAYDIIICDECH-STDATSILGIGTVLDQAE  122 (136)
T ss_dssp             GGCCCSEEEEETTT-CCSHHHHHHHHHHHHHTT
T ss_pred             hhhcCCEEEEeccc-ccCHHHHHHHHHHHHHHH
Confidence            45678999999995 468877666666666553

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=87.25  E-value=0.12  Score=44.44  Aligned_cols=16  Identities=31%  Similarity=0.488  Sum_probs=13.6

Q ss_pred             EEEEEcCCCChHHHHH
Q 020527          110 VVAIVGLSGSGKSTFV  125 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl  125 (325)
                      .+.|.|+.||||||.+
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            4679999999999865

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=87.11  E-value=0.08  Score=45.05  Aligned_cols=25  Identities=12%  Similarity=0.246  Sum_probs=20.0

Q ss_pred             eeCCcEEEEEcCCCChHHH--HHHHHH
Q 020527          105 IEANEVVAIVGLSGSGKST--FVNLLL  129 (325)
Q Consensus       105 i~~Ge~~~iiG~nGsGKST--Ll~~l~  129 (325)
                      +.+|+.+.|.+|+|||||+  |..++.
T Consensus         6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~   32 (305)
T d2bmfa2           6 FRKKRLTIMDLHPGAGKTKRYLPAIVR   32 (305)
T ss_dssp             SSTTCEEEECCCTTSSTTTTHHHHHHH
T ss_pred             hhcCCcEEEEECCCCCHHHHHHHHHHH
Confidence            5789999999999999996  334443

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=86.82  E-value=0.13  Score=43.57  Aligned_cols=16  Identities=25%  Similarity=0.463  Sum_probs=13.6

Q ss_pred             EEEEEcCCCChHHHHH
Q 020527          110 VVAIVGLSGSGKSTFV  125 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl  125 (325)
                      -+.|+|+-||||||.+
T Consensus        16 ~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEEECCCTTSCHHHHH
T ss_pred             CEEEEeeCCccHHHHH
Confidence            4679999999999764

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=86.76  E-value=0.22  Score=42.26  Aligned_cols=26  Identities=31%  Similarity=0.395  Sum_probs=22.7

Q ss_pred             CcEEEEEcCCCChHHHHHHHHHcCCC
Q 020527          108 NEVVAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       108 Ge~~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      +-.++|+|-.-+|||||++.|.|-..
T Consensus       112 ~~~v~vvG~PNvGKSsliN~L~~~~~  137 (273)
T d1puja_         112 AIRALIIGIPNVGKSTLINRLAKKNI  137 (273)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred             ceEEEEEecCccchhhhhhhhhccce
Confidence            44599999999999999999999654

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.02  E-value=0.19  Score=41.96  Aligned_cols=20  Identities=40%  Similarity=0.519  Sum_probs=17.6

Q ss_pred             EEEEEcCCCChHHHHHHHHH
Q 020527          110 VVAIVGLSGSGKSTFVNLLL  129 (325)
Q Consensus       110 ~~~iiG~nGsGKSTLl~~l~  129 (325)
                      -++++|..++|||||..-|+
T Consensus         8 Ni~iiGHvD~GKsTl~~~ll   27 (239)
T d1f60a3           8 NVVVIGHVDSGKSTTTGHLI   27 (239)
T ss_dssp             EEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            37899999999999997774

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.61  E-value=0.17  Score=44.75  Aligned_cols=23  Identities=22%  Similarity=0.437  Sum_probs=19.9

Q ss_pred             EEEEcCCCChHHHHHHHHH---cCCC
Q 020527          111 VAIVGLSGSGKSTFVNLLL---RLYE  133 (325)
Q Consensus       111 ~~iiG~nGsGKSTLl~~l~---gl~~  133 (325)
                      +||+|+-|+|||||+..|.   |...
T Consensus        20 I~iiGhvd~GKTTL~d~Ll~~~g~i~   45 (341)
T d1n0ua2          20 MSVIAHVDHGKSTLTDSLVQRAGIIS   45 (341)
T ss_dssp             EEEECCGGGTHHHHHHHHHHHHBCCB
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCcc
Confidence            8999999999999999884   6543

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=85.56  E-value=0.26  Score=39.84  Aligned_cols=44  Identities=5%  Similarity=0.145  Sum_probs=34.8

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHH
Q 020527          235 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI  283 (325)
Q Consensus       235 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~  283 (325)
                      +.+|+++||+ -.|...++..+++.|++-.    .+...|++|++.+.+
T Consensus        79 ~~KviIId~a-d~l~~~aqNaLLK~LEEPp----~~t~fiLit~~~~~l  122 (198)
T d2gnoa2          79 TRKYVIVHDC-ERMTQQAANAFLKALEEPP----EYAVIVLNTRRWHYL  122 (198)
T ss_dssp             SSEEEEETTG-GGBCHHHHHHTHHHHHSCC----TTEEEEEEESCGGGS
T ss_pred             CCEEEEEeCc-cccchhhhhHHHHHHhCCC----CCceeeeccCChhhC
Confidence            4589999996 5788888888888887653    467889999998754

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.44  E-value=0.23  Score=37.06  Aligned_cols=39  Identities=8%  Similarity=0.003  Sum_probs=27.6

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHH-HcCCCCCCC-eEEE-CCE
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLL-LRLYEPSDG-QIYI-DGF  144 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l-~gl~~~~~G-~I~i-~g~  144 (325)
                      +.|=.+.+.|-+||||||+.+.| ..|.+-..| .|.+ +|.
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~   45 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHN   45 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCT
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCC
Confidence            35667889999999999999988 466653333 4553 444

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.39  E-value=0.097  Score=43.30  Aligned_cols=24  Identities=25%  Similarity=0.279  Sum_probs=18.8

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHH
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLL  129 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~  129 (325)
                      -.|+-+.+++|.|+|||+..-+.+
T Consensus        56 l~g~~~~i~apTGsGKT~~~~~~~   79 (237)
T d1gkub1          56 LRKESFAATAPTGVGKTSFGLAMS   79 (237)
T ss_dssp             HTTCCEECCCCBTSCSHHHHHHHH
T ss_pred             HCCCCEEEEecCCChHHHHHHHHH
Confidence            368888999999999998654433

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=85.27  E-value=0.18  Score=42.30  Aligned_cols=19  Identities=32%  Similarity=0.520  Sum_probs=17.4

Q ss_pred             EEEEcCCCChHHHHHHHHH
Q 020527          111 VAIVGLSGSGKSTFVNLLL  129 (325)
Q Consensus       111 ~~iiG~nGsGKSTLl~~l~  129 (325)
                      ++|+|.-++|||||+..|.
T Consensus        27 i~iiGHVD~GKSTL~~~Ll   45 (245)
T d1r5ba3          27 IVFIGHVDAGKSTLGGNIL   45 (245)
T ss_dssp             EEEEECGGGTHHHHHHHHH
T ss_pred             EEEEeeCCCCHHHHHHHHH
Confidence            7999999999999998883

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=85.00  E-value=0.27  Score=37.50  Aligned_cols=25  Identities=28%  Similarity=0.282  Sum_probs=20.6

Q ss_pred             CcEEEEEcCCCChHHH-HHHHHHcCC
Q 020527          108 NEVVAIVGLSGSGKST-FVNLLLRLY  132 (325)
Q Consensus       108 Ge~~~iiG~nGsGKST-Ll~~l~gl~  132 (325)
                      |.+..|+||=.||||| |++.+-...
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~~~   27 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHRLE   27 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             cEEEEEEccccCHHHHHHHHHHHHHH
Confidence            6788999999999999 777765543

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=84.88  E-value=0.31  Score=40.70  Aligned_cols=28  Identities=36%  Similarity=0.457  Sum_probs=22.8

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHcCCCC
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLLRLYEP  134 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~~~  134 (325)
                      .+.-+.|.|+.|+||+++.+.|...-+.
T Consensus        22 ~~~pvlI~Ge~GtGK~~~A~~ih~~s~~   49 (247)
T d1ny5a2          22 AECPVLITGESGVGKEVVARLIHKLSDR   49 (247)
T ss_dssp             CCSCEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHHhcCC
Confidence            3556889999999999999999865433

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=84.86  E-value=0.24  Score=47.86  Aligned_cols=27  Identities=30%  Similarity=0.522  Sum_probs=23.1

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      +..+.+.|.|+||||||+-.|.|...+
T Consensus        84 ~~~QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          84 QENQCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            567899999999999999998886543

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=84.39  E-value=0.24  Score=48.03  Aligned_cols=27  Identities=26%  Similarity=0.444  Sum_probs=23.6

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      +..+.+.|.|+||||||+-.|.++..+
T Consensus       123 ~~nQsIiisGeSGaGKTe~~k~il~yL  149 (712)
T d1d0xa2         123 RQNQSLLITGESGAGKTENTKKVIQYL  149 (712)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence            457899999999999999999887655

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=84.14  E-value=0.21  Score=44.94  Aligned_cols=19  Identities=32%  Similarity=0.520  Sum_probs=16.3

Q ss_pred             EEEEcCCCChHHHHHHHHH
Q 020527          111 VAIVGLSGSGKSTFVNLLL  129 (325)
Q Consensus       111 ~~iiG~nGsGKSTLl~~l~  129 (325)
                      ..||||+|.|||+++.-++
T Consensus        46 ~llvG~~GvGKtaiv~~la   64 (387)
T d1qvra2          46 PVLIGEPGVGKTAIVEGLA   64 (387)
T ss_dssp             CEEEECTTSCHHHHHHHHH
T ss_pred             CeEECCCCCCHHHHHHHHH
Confidence            5799999999999986555

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=84.12  E-value=0.17  Score=41.25  Aligned_cols=29  Identities=17%  Similarity=0.327  Sum_probs=25.5

Q ss_pred             eeCCcEEEEEcCCCChHHHHHHHHHcCCC
Q 020527          105 IEANEVVAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       105 i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      +++--++.+.||.++|||++..+|+.++.
T Consensus        50 ~PKkn~i~~~GP~~TGKS~f~~sl~~~l~   78 (205)
T d1tuea_          50 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ   78 (205)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             CCCceEEEEECCCCccHHHHHHHHHHHhC
Confidence            46667999999999999999999999863

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=83.17  E-value=0.29  Score=47.43  Aligned_cols=27  Identities=19%  Similarity=0.380  Sum_probs=23.3

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      +..+.+.|.|+||||||+-.|.|+..+
T Consensus        89 ~~~Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          89 REDQSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            457899999999999999988887654

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=82.08  E-value=0.33  Score=47.66  Aligned_cols=27  Identities=26%  Similarity=0.525  Sum_probs=22.9

Q ss_pred             eCCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527          106 EANEVVAIVGLSGSGKSTFVNLLLRLY  132 (325)
Q Consensus       106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~  132 (325)
                      +..+.+.|.|+||||||+-.|.++..+
T Consensus       121 ~~~QsIiisGeSGaGKTe~~K~il~yL  147 (794)
T d2mysa2         121 RENQSILITGESGAGKTVNTKRVIQYF  147 (794)
T ss_dssp             TCCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            457899999999999999888777655

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=80.59  E-value=0.25  Score=39.57  Aligned_cols=19  Identities=11%  Similarity=0.237  Sum_probs=15.6

Q ss_pred             CCcEEEEEcCCCChHHHHH
Q 020527          107 ANEVVAIVGLSGSGKSTFV  125 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl  125 (325)
                      .|.-+.+..|+|||||+..
T Consensus        39 ~~~~~il~apTGsGKT~~a   57 (202)
T d2p6ra3          39 SGKNLLLAMPTAAGKTLLA   57 (202)
T ss_dssp             TCSCEEEECSSHHHHHHHH
T ss_pred             cCCCEEEEcCCCCchhHHH
Confidence            4666789999999999863

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.56  E-value=0.45  Score=35.86  Aligned_cols=27  Identities=30%  Similarity=0.320  Sum_probs=21.0

Q ss_pred             CCcEEEEEcCCCChHHHHHHHHHcCCC
Q 020527          107 ANEVVAIVGLSGSGKSTFVNLLLRLYE  133 (325)
Q Consensus       107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~~  133 (325)
                      +|.+..|+||=.|||||-|--.+.-++
T Consensus         1 ~G~L~li~GpMfsGKTt~Li~~~~~~~   27 (133)
T d1xbta1           1 RGQIQVILGPMFSGKSTELMRRVRRFQ   27 (133)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CcEEEEEEecccCHHHHHHHHHHHHHH
Confidence            588999999999999997754444343