Citrus Sinensis ID: 020528
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 325 | 2.2.26 [Sep-21-2011] | |||||||
| Q43317 | 325 | Cysteine synthase OS=Citr | N/A | no | 1.0 | 1.0 | 0.895 | 1e-157 | |
| Q00834 | 325 | Cysteine synthase OS=Spin | N/A | no | 0.996 | 0.996 | 0.870 | 1e-154 | |
| O81154 | 325 | Cysteine synthase OS=Sola | N/A | no | 1.0 | 1.0 | 0.833 | 1e-149 | |
| P80608 | 325 | Cysteine synthase OS=Zea | N/A | no | 1.0 | 1.0 | 0.836 | 1e-148 | |
| Q9XEA6 | 321 | Cysteine synthase OS=Oryz | yes | no | 0.975 | 0.987 | 0.839 | 1e-147 | |
| P38076 | 325 | Cysteine synthase OS=Trit | N/A | no | 0.975 | 0.975 | 0.839 | 1e-146 | |
| Q9XEA8 | 325 | Cysteine synthase OS=Oryz | no | no | 1.0 | 1.0 | 0.821 | 1e-145 | |
| O23733 | 322 | Cysteine synthase OS=Bras | N/A | no | 0.981 | 0.990 | 0.818 | 1e-145 | |
| P47998 | 322 | Cysteine synthase OS=Arab | yes | no | 0.981 | 0.990 | 0.811 | 1e-143 | |
| O23735 | 324 | Cysteine synthase OS=Bras | N/A | no | 0.975 | 0.978 | 0.813 | 1e-142 |
| >sp|Q43317|CYSK_CITLA Cysteine synthase OS=Citrullus lanatus PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 553 bits (1426), Expect = e-157, Method: Compositional matrix adjust.
Identities = 291/325 (89%), Positives = 309/325 (95%)
Query: 1 MVEEKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADA 60
M + KS IAKDVTELIG TPLVYLNR+VDGCVAR+AAKLEMMEPCSSVKDRIGYSMI+DA
Sbjct: 1 MADAKSTIAKDVTELIGNTPLVYLNRVVDGCVARVAAKLEMMEPCSSVKDRIGYSMISDA 60
Query: 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120
E KGLI PGESVLIEPTSGNTGIGLAF+AAAKGYRLII MPASMSLERR +L AFGAELV
Sbjct: 61 ENKGLITPGESVLIEPTSGNTGIGLAFIAAAKGYRLIICMPASMSLERRTILRAFGAELV 120
Query: 121 LTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALV 180
LTDPARGMKGAVQKAEEI+ KTPNSY+LQQFENPANPKIHYETTGPEIW+G+GGKIDALV
Sbjct: 121 LTDPARGMKGAVQKAEEIKAKTPNSYILQQFENPANPKIHYETTGPEIWRGSGGKIDALV 180
Query: 181 SGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDV 240
SGIGTGGTVTGAGKYLKE NP IKLYGVEPVESA+LSGGKPGPHKIQGIGAGFIPGVLDV
Sbjct: 181 SGIGTGGTVTGAGKYLKEQNPNIKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPGVLDV 240
Query: 241 NLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPS 300
NLLDE +Q+SSEE+IETAKLLALKEGLLVGISSGAA AAAI+IAKRPENAGKLIV VFPS
Sbjct: 241 NLLDEVIQVSSEESIETAKLLALKEGLLVGISSGAAAAAAIRIAKRPENAGKLIVAVFPS 300
Query: 301 FGERYLSSVLFESVKKEAESMVFEP 325
FGERYLS+VLFESVK+E E+MVFEP
Sbjct: 301 FGERYLSTVLFESVKRETENMVFEP 325
|
Produces L-cysteine from O-acetyl-L-serine and hydrogen sulfide. Can also use pyrazole and 3,4-dihydroxypyridine instead of the hydrogen sulfide to produce two plant specific non-protein amino acids beta-pyrazolylalanine and L-mimosine. Citrullus lanatus (taxid: 3654) EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 5EC: 2 |
| >sp|Q00834|CYSK_SPIOL Cysteine synthase OS=Spinacia oleracea PE=1 SV=1 | Back alignment and function description |
|---|
Score = 545 bits (1403), Expect = e-154, Method: Compositional matrix adjust.
Identities = 282/324 (87%), Positives = 306/324 (94%)
Query: 1 MVEEKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADA 60
MVEEK+ IAKDVTELIGKTPLVYLN + DGCVAR+AAKLE MEPCSSVKDRIG+SMI DA
Sbjct: 1 MVEEKAFIAKDVTELIGKTPLVYLNTVADGCVARVAAKLEGMEPCSSVKDRIGFSMITDA 60
Query: 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120
E+ GLI PGESVLIEPTSGNTGIGLAF+AAAKGY+LIITMPASMSLERR +L AFGAEL+
Sbjct: 61 EKSGLITPGESVLIEPTSGNTGIGLAFIAAAKGYKLIITMPASMSLERRTILRAFGAELI 120
Query: 121 LTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALV 180
LTDPA+GMKGAVQKAEEIRDKTPNSY+LQQFENPANPK+HYETTGPEIWKGTGGKID V
Sbjct: 121 LTDPAKGMKGAVQKAEEIRDKTPNSYILQQFENPANPKVHYETTGPEIWKGTGGKIDIFV 180
Query: 181 SGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDV 240
SGIGTGGT+TGAGKYLKE NP++KL G+EPVESAVLSGGKPGPHKIQG+GAGFIPGVLDV
Sbjct: 181 SGIGTGGTITGAGKYLKEQNPDVKLIGLEPVESAVLSGGKPGPHKIQGLGAGFIPGVLDV 240
Query: 241 NLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPS 300
N++DE VQISSEE+IE AKLLALKEGLLVGISSGAA AAAI++AKRPENAGKLIV VFPS
Sbjct: 241 NIIDEVVQISSEESIEMAKLLALKEGLLVGISSGAAAAAAIKVAKRPENAGKLIVAVFPS 300
Query: 301 FGERYLSSVLFESVKKEAESMVFE 324
FGERYLSSVLF+SV+KEAESMV E
Sbjct: 301 FGERYLSSVLFDSVRKEAESMVIE 324
|
Spinacia oleracea (taxid: 3562) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|O81154|CYSK_SOLTU Cysteine synthase OS=Solanum tuberosum PE=2 SV=1 | Back alignment and function description |
|---|
Score = 529 bits (1362), Expect = e-149, Method: Compositional matrix adjust.
Identities = 271/325 (83%), Positives = 303/325 (93%)
Query: 1 MVEEKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADA 60
M EK IAKDVTELIG TPLVYLN +VDGCVAR+AAKLE MEPCSSVKDRIGYSMI DA
Sbjct: 1 MAGEKIGIAKDVTELIGNTPLVYLNNVVDGCVARVAAKLESMEPCSSVKDRIGYSMITDA 60
Query: 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120
EEKGLI+PGESVLIEPTSGNTG+GLAFMAAAKGY+LIITMP+SMSLERR++L F +ELV
Sbjct: 61 EEKGLIKPGESVLIEPTSGNTGVGLAFMAAAKGYKLIITMPSSMSLERRIILRGFRSELV 120
Query: 121 LTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALV 180
LTDPA+GMKGA+ KAEEI+ KTPNSY+LQQFENPANPKIHYETTGPEIWKG+ GK+DAL
Sbjct: 121 LTDPAKGMKGAISKAEEIKAKTPNSYILQQFENPANPKIHYETTGPEIWKGSNGKVDALA 180
Query: 181 SGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDV 240
SGIGTGGT+TG+GKYL+E NP +KLYGVEPVESA+LSGGKPGPHKIQGIGAGFIPGVL+V
Sbjct: 181 SGIGTGGTITGSGKYLREQNPNVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPGVLEV 240
Query: 241 NLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPS 300
NL+D+ VQ+SSEE+IE AKLLALKEGLLVGISSGAA AAAI++AKRPENAGKLIVV+FPS
Sbjct: 241 NLIDDVVQVSSEESIEMAKLLALKEGLLVGISSGAAAAAAIKVAKRPENAGKLIVVIFPS 300
Query: 301 FGERYLSSVLFESVKKEAESMVFEP 325
FGERYLSSVLFE+V++EAE+M EP
Sbjct: 301 FGERYLSSVLFETVRREAENMTVEP 325
|
Solanum tuberosum (taxid: 4113) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|P80608|CYSK_MAIZE Cysteine synthase OS=Zea mays PE=1 SV=2 | Back alignment and function description |
|---|
Score = 523 bits (1346), Expect = e-148, Method: Compositional matrix adjust.
Identities = 272/325 (83%), Positives = 296/325 (91%)
Query: 1 MVEEKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADA 60
M E IAKDVTELIG TPLVYLN++ DGCV R AKLE MEPCSSVKDRIGYSMI DA
Sbjct: 1 MGEASPSIAKDVTELIGNTPLVYLNKVTDGCVGRSRAKLESMEPCSSVKDRIGYSMITDA 60
Query: 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120
EEKGLI PG SVLIEPTSGNTGIGLAFMAAAKGY+L +TMPASMS+ERR++L AFGAELV
Sbjct: 61 EEKGLITPGVSVLIEPTSGNTGIGLAFMAAAKGYKLTLTMPASMSMERRIILKAFGAELV 120
Query: 121 LTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALV 180
LTDP GMKGAV+KAEEI+ KTPNSY+LQQFENPANPKIHYETTGPEIWK T GKID LV
Sbjct: 121 LTDPLLGMKGAVKKAEEIQAKTPNSYILQQFENPANPKIHYETTGPEIWKATAGKIDGLV 180
Query: 181 SGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDV 240
SGIGTGGT+TG G+YL+E NP +KLYGVEPVESAVL+GGKPGPHKIQGIGAGFIPGVLDV
Sbjct: 181 SGIGTGGTITGTGRYLREQNPNVKLYGVEPVESAVLNGGKPGPHKIQGIGAGFIPGVLDV 240
Query: 241 NLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPS 300
+LLDET+Q+SS+EAIETAK LALKEGLLVGISSGAA AAA+++AKRPENAGKL VVVFPS
Sbjct: 241 DLLDETLQVSSDEAIETAKALALKEGLLVGISSGAAAAAAVRLAKRPENAGKLFVVVFPS 300
Query: 301 FGERYLSSVLFESVKKEAESMVFEP 325
FGERYLSSVLF+S+KKEAESMV EP
Sbjct: 301 FGERYLSSVLFQSIKKEAESMVVEP 325
|
Zea mays (taxid: 4577) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|Q9XEA6|CYSK1_ORYSJ Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 520 bits (1338), Expect = e-147, Method: Compositional matrix adjust.
Identities = 266/317 (83%), Positives = 297/317 (93%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
IAKDVTELIG TPLVYLNR+ DGCV R+AAKLE MEPCSSVKDRIGYSMI DAEEKGLI
Sbjct: 5 IAKDVTELIGNTPLVYLNRVTDGCVGRVAAKLESMEPCSSVKDRIGYSMITDAEEKGLIT 64
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
PG+SVLIEPTSGNTGIGLAFMAAAKGYRL++TMPASMS+ERR++L AFGAEL+LTDP G
Sbjct: 65 PGKSVLIEPTSGNTGIGLAFMAAAKGYRLVLTMPASMSMERRIILKAFGAELILTDPLLG 124
Query: 128 MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGG 187
MKGAVQKAEE+ KT NS++LQQFENPANPKIHYETTGPEIWKGTGGK+D LVSGIGTGG
Sbjct: 125 MKGAVQKAEELAAKTNNSFILQQFENPANPKIHYETTGPEIWKGTGGKVDGLVSGIGTGG 184
Query: 188 TVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETV 247
T+TGAG+YL+E NP+IK+YGVEPVESAVLSGGKPGPHKIQGIGAGF+PGVLDV+L++ETV
Sbjct: 185 TITGAGRYLREQNPDIKIYGVEPVESAVLSGGKPGPHKIQGIGAGFVPGVLDVDLINETV 244
Query: 248 QISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLS 307
Q+SS+EAIE AK LALKEGLLVGISSGAA AAA+++A+RPEN GKL VVVFPSFGERYLS
Sbjct: 245 QVSSDEAIEMAKALALKEGLLVGISSGAAAAAAVRLAQRPENEGKLFVVVFPSFGERYLS 304
Query: 308 SVLFESVKKEAESMVFE 324
SVLF+S+KKEAE+MV E
Sbjct: 305 SVLFQSIKKEAENMVVE 321
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|P38076|CYSK_WHEAT Cysteine synthase OS=Triticum aestivum GN=CYS1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 519 bits (1336), Expect = e-146, Method: Compositional matrix adjust.
Identities = 266/317 (83%), Positives = 293/317 (92%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
IAKDVTELIG TPLVYLN++ DGCV R+AAKLE MEPCSSVKDRIGYSMI DAEEKG I
Sbjct: 9 IAKDVTELIGNTPLVYLNKVTDGCVGRVAAKLESMEPCSSVKDRIGYSMITDAEEKGFIV 68
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
PG+SVLIEPTSGNTGIGLAFMAAAKGYRL++TMPASMS+ERR++L AFGAEL+LTDP G
Sbjct: 69 PGKSVLIEPTSGNTGIGLAFMAAAKGYRLVLTMPASMSMERRIILKAFGAELILTDPLLG 128
Query: 128 MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGG 187
MKGAVQKAEE+ KTPNSY+LQQFEN ANPKIHYETTGPEIWKGTGGKID LVSGIGTGG
Sbjct: 129 MKGAVQKAEELAAKTPNSYILQQFENAANPKIHYETTGPEIWKGTGGKIDGLVSGIGTGG 188
Query: 188 TVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETV 247
T+TG GKYL+E NP IKLYGVEP ESA+L+GGKPGPHKIQGIGAGFIPGVLDV+++DET+
Sbjct: 189 TITGTGKYLQEQNPNIKLYGVEPTESAILNGGKPGPHKIQGIGAGFIPGVLDVDIIDETI 248
Query: 248 QISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLS 307
Q+SS+E+IE AK LALKEGLLVGISSGAA AAAI++A+RPENAGKL VVVFPSFGERYLS
Sbjct: 249 QVSSDESIEMAKSLALKEGLLVGISSGAAAAAAIKVAQRPENAGKLFVVVFPSFGERYLS 308
Query: 308 SVLFESVKKEAESMVFE 324
SVLF S+KKEAESMV E
Sbjct: 309 SVLFHSIKKEAESMVVE 325
|
Triticum aestivum (taxid: 4565) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|Q9XEA8|CYSK2_ORYSJ Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 516 bits (1328), Expect = e-145, Method: Compositional matrix adjust.
Identities = 267/325 (82%), Positives = 295/325 (90%)
Query: 1 MVEEKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADA 60
M E IA DVT LIG TPLVYLN++VDGC A+IAAKLE+MEPCSSVKDRIGYSMI DA
Sbjct: 1 MAESGQSIASDVTALIGNTPLVYLNKVVDGCEAQIAAKLEIMEPCSSVKDRIGYSMITDA 60
Query: 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120
EEKGLI PG+SVLIEPTSGNTGIGLAFMAAAKGY+LI+TMPASMS+ERR++L AFGAELV
Sbjct: 61 EEKGLITPGKSVLIEPTSGNTGIGLAFMAAAKGYKLILTMPASMSMERRIILKAFGAELV 120
Query: 121 LTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALV 180
LTDP GMKGA+QKA+E+ K PNSY+LQQFENPANPKIHYETTGPEIWK T GK+D LV
Sbjct: 121 LTDPLLGMKGAIQKADELAAKMPNSYILQQFENPANPKIHYETTGPEIWKATAGKVDILV 180
Query: 181 SGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDV 240
SGIGTGGTVTG GKYLKE NPEIK+YGVEP ESA+LSGG+PGPHKIQGIGAGF+PGVLDV
Sbjct: 181 SGIGTGGTVTGTGKYLKEQNPEIKIYGVEPTESAILSGGRPGPHKIQGIGAGFVPGVLDV 240
Query: 241 NLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPS 300
NLLDE VQ+SS+EAI AK LALKEGLLVGISSGAA AAI++A+RPEN GKL+VVVFPS
Sbjct: 241 NLLDEVVQVSSDEAISMAKQLALKEGLLVGISSGAAAVAAIRVAQRPENKGKLVVVVFPS 300
Query: 301 FGERYLSSVLFESVKKEAESMVFEP 325
FGERYLSSVLFES+K+EAE+MVFEP
Sbjct: 301 FGERYLSSVLFESIKREAENMVFEP 325
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|O23733|CYSK1_BRAJU Cysteine synthase OS=Brassica juncea PE=2 SV=1 | Back alignment and function description |
|---|
Score = 513 bits (1321), Expect = e-145, Method: Compositional matrix adjust.
Identities = 261/319 (81%), Positives = 295/319 (92%)
Query: 6 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGL 65
S IAKDVTELIG TPLVYLN + +GCV R+AAKLEMMEPCSSVKDRIG+SMI+DAE+KGL
Sbjct: 3 SRIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEQKGL 62
Query: 66 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 125
I+PGESVLIEPTSGNTG+GLAF AAAKGY+LIITMPASMS+ERR++LLAFG ELVLTDPA
Sbjct: 63 IKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSVERRIILLAFGVELVLTDPA 122
Query: 126 RGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGT 185
+GMKGA+ KAEEI KTPN Y+LQQFENPANPKIHYETTGPEIWKGT GKID VSGIGT
Sbjct: 123 KGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTDGKIDGFVSGIGT 182
Query: 186 GGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDE 245
GGT+TGAGKYLKE NP +KLYGVEP+ESA+LSGGKPGPHKIQGIGAGFIP VL+V+L+DE
Sbjct: 183 GGTITGAGKYLKEQNPNVKLYGVEPIESAILSGGKPGPHKIQGIGAGFIPSVLEVDLIDE 242
Query: 246 TVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERY 305
VQ+SS+E+I+ A+LLALKEGLLVGISSGAA AAAI++AKRPENAGKL V VFPSFGERY
Sbjct: 243 VVQVSSDESIDMARLLALKEGLLVGISSGAAAAAAIKLAKRPENAGKLFVAVFPSFGERY 302
Query: 306 LSSVLFESVKKEAESMVFE 324
LS+VLF++ +KEAESM F+
Sbjct: 303 LSTVLFDATRKEAESMTFQ 321
|
Brassica juncea (taxid: 3707) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|P47998|CYSK1_ARATH Cysteine synthase OS=Arabidopsis thaliana GN=OASA1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 508 bits (1308), Expect = e-143, Method: Compositional matrix adjust.
Identities = 259/319 (81%), Positives = 293/319 (91%)
Query: 6 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGL 65
S IAKDVTELIG TPLVYLN + +GCV R+AAKLEMMEPCSSVKDRIG+SMI+DAE+KGL
Sbjct: 3 SRIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGL 62
Query: 66 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 125
I+PGESVLIEPTSGNTG+GLAF AAAKGY+LIITMPASMS ERR++LLAFG ELVLTDPA
Sbjct: 63 IKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122
Query: 126 RGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGT 185
+GMKGA+ KAEEI KTPN Y+LQQFENPANPKIHYETTGPEIWKGTGGKID VSGIGT
Sbjct: 123 KGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGT 182
Query: 186 GGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDE 245
GGT+TGAGKYLKE N +KLYGVEPVESA+LSGGKPGPHKIQGIGAGFIP VL+V+L+DE
Sbjct: 183 GGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDE 242
Query: 246 TVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERY 305
VQ+SS+E+I+ A+ LALKEGLLVGISSGAA AAAI++A+RPENAGKL V +FPSFGERY
Sbjct: 243 VVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENAGKLFVAIFPSFGERY 302
Query: 306 LSSVLFESVKKEAESMVFE 324
LS+VLF++ +KEAE+M FE
Sbjct: 303 LSTVLFDATRKEAEAMTFE 321
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|O23735|CYSK2_BRAJU Cysteine synthase OS=Brassica juncea PE=2 SV=1 | Back alignment and function description |
|---|
Score = 503 bits (1295), Expect = e-142, Method: Compositional matrix adjust.
Identities = 258/317 (81%), Positives = 291/317 (91%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
IA DVTELIG TPLVYLN + +GCV R+AAKLEMMEPCSSVKDRIG+SMI+DAE+KGLI+
Sbjct: 7 IANDVTELIGNTPLVYLNSVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIK 66
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
PGESVLIEPTSGNTG+GLAF AAAKGY+LIITMPASMS+ERR++LLAFG ELVLTDPA+G
Sbjct: 67 PGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSIERRIILLAFGVELVLTDPAKG 126
Query: 128 MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGG 187
MKGA+ KAEEI KTPN Y+LQQFENPANPKIHYETTGPEIWKGT GKID +SGIGTGG
Sbjct: 127 MKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTEGKIDGFISGIGTGG 186
Query: 188 TVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETV 247
T+TGAGKYLKE NP +KLYGVEPVESA+LSGGKPGPHKIQGIGAGFIP VL+ NL+DE V
Sbjct: 187 TITGAGKYLKEQNPNVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPNVLETNLIDEVV 246
Query: 248 QISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLS 307
Q+SS+E+I+ A+LLA +EGLLVGISSGAA AAAI++AKRPENAGKL V VFPSFGERYLS
Sbjct: 247 QVSSDESIDMARLLAREEGLLVGISSGAAAAAAIKLAKRPENAGKLFVAVFPSFGERYLS 306
Query: 308 SVLFESVKKEAESMVFE 324
+VLF++ +KEAESM FE
Sbjct: 307 TVLFDATRKEAESMTFE 323
|
Brassica juncea (taxid: 3707) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 325 | ||||||
| 356573072 | 325 | PREDICTED: cysteine synthase-like [Glyci | 1.0 | 1.0 | 0.901 | 1e-158 | |
| 224125568 | 325 | predicted protein [Populus trichocarpa] | 1.0 | 1.0 | 0.92 | 1e-158 | |
| 224144420 | 325 | predicted protein [Populus trichocarpa] | 1.0 | 1.0 | 0.904 | 1e-157 | |
| 255542380 | 325 | cysteine synthase, putative [Ricinus com | 1.0 | 1.0 | 0.916 | 1e-157 | |
| 224130736 | 325 | predicted protein [Populus trichocarpa] | 1.0 | 1.0 | 0.898 | 1e-157 | |
| 255644573 | 325 | unknown [Glycine max] | 1.0 | 1.0 | 0.892 | 1e-156 | |
| 307136057 | 325 | cysteine synthase [Cucumis melo subsp. m | 1.0 | 1.0 | 0.886 | 1e-156 | |
| 2493895 | 325 | RecName: Full=Cysteine synthase; Short=C | 1.0 | 1.0 | 0.895 | 1e-155 | |
| 388490632 | 325 | unknown [Lotus japonicus] | 1.0 | 1.0 | 0.873 | 1e-155 | |
| 255647610 | 325 | unknown [Glycine max] | 1.0 | 1.0 | 0.898 | 1e-155 |
| >gi|356573072|ref|XP_003554689.1| PREDICTED: cysteine synthase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 562 bits (1448), Expect = e-158, Method: Compositional matrix adjust.
Identities = 293/325 (90%), Positives = 311/325 (95%)
Query: 1 MVEEKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADA 60
M EKS IAKDVTELIGKTPLVYLN IVDGCVA++AAKLEMMEPCSSVKDRIGYSMI DA
Sbjct: 1 MAAEKSNIAKDVTELIGKTPLVYLNHIVDGCVAKVAAKLEMMEPCSSVKDRIGYSMIVDA 60
Query: 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120
EEKGLI PGESVLIEPTSGNTGIGLAFMAAAKGY+LIITMP+SMSLERR +L AFGAELV
Sbjct: 61 EEKGLITPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPSSMSLERRTILRAFGAELV 120
Query: 121 LTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALV 180
LTDPA+GMKGAVQKAEEIRDKTPNSY+LQQFENPANPK+HYETTGPEIWKG+ GK+DALV
Sbjct: 121 LTDPAKGMKGAVQKAEEIRDKTPNSYMLQQFENPANPKVHYETTGPEIWKGSSGKVDALV 180
Query: 181 SGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDV 240
SGIGTGGTVTGAGKYLKE NP+IKLYG+EPVES +LSGGKPGPHKIQGIGAGFIPGVLDV
Sbjct: 181 SGIGTGGTVTGAGKYLKEQNPDIKLYGIEPVESPILSGGKPGPHKIQGIGAGFIPGVLDV 240
Query: 241 NLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPS 300
+LLDE VQISSEEAIETAKLLALKEGLLVGISSGAA AAA++IAKRPENAGKLIV VFPS
Sbjct: 241 DLLDEVVQISSEEAIETAKLLALKEGLLVGISSGAAAAAAVKIAKRPENAGKLIVAVFPS 300
Query: 301 FGERYLSSVLFESVKKEAESMVFEP 325
FGERYLSSVLFESVK+EAES+VFEP
Sbjct: 301 FGERYLSSVLFESVKREAESLVFEP 325
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224125568|ref|XP_002319618.1| predicted protein [Populus trichocarpa] gi|118482627|gb|ABK93233.1| unknown [Populus trichocarpa] gi|222857994|gb|EEE95541.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 562 bits (1448), Expect = e-158, Method: Compositional matrix adjust.
Identities = 299/325 (92%), Positives = 313/325 (96%)
Query: 1 MVEEKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADA 60
M EEK IAKD+TELIGKTPLVYLN +VDGCVARIAAKLEMMEPCSSVKDRIGYSMI DA
Sbjct: 1 MAEEKGSIAKDITELIGKTPLVYLNNVVDGCVARIAAKLEMMEPCSSVKDRIGYSMITDA 60
Query: 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120
EEKGLI+ GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV
Sbjct: 61 EEKGLIKAGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120
Query: 121 LTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALV 180
LTDPARGMKGAVQKAEEI KTPNSY+LQQFENPANPK+HYETTGPEIWKG+GGK+DA V
Sbjct: 121 LTDPARGMKGAVQKAEEISAKTPNSYILQQFENPANPKVHYETTGPEIWKGSGGKVDAFV 180
Query: 181 SGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDV 240
SGIGTGGT+TGAGKYLKE NP+IKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVL+V
Sbjct: 181 SGIGTGGTITGAGKYLKEQNPDIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLNV 240
Query: 241 NLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPS 300
+LLDETVQISSEEAIETAKLLALKEGLLVGISSGAA AAAI+IAKRPENAGKLIV +FPS
Sbjct: 241 DLLDETVQISSEEAIETAKLLALKEGLLVGISSGAAAAAAIKIAKRPENAGKLIVAIFPS 300
Query: 301 FGERYLSSVLFESVKKEAESMVFEP 325
FGERYLSSVLFESVKKEAE+MVFEP
Sbjct: 301 FGERYLSSVLFESVKKEAENMVFEP 325
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224144420|ref|XP_002336146.1| predicted protein [Populus trichocarpa] gi|222874214|gb|EEF11345.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust.
Identities = 294/325 (90%), Positives = 311/325 (95%)
Query: 1 MVEEKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADA 60
M EEK IAKDVTELIGKTPLVYLN +VDGCVARIAAKLEMMEPCSSVKDRIGYSMI DA
Sbjct: 1 MAEEKGSIAKDVTELIGKTPLVYLNNVVDGCVARIAAKLEMMEPCSSVKDRIGYSMIKDA 60
Query: 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120
EEKGLI+PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL+
Sbjct: 61 EEKGLIKPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELI 120
Query: 121 LTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALV 180
LTDPARGMKGAVQKAEEI KTPN+Y+LQQFENPANPKIHYETTGPE+WKG+GGK+DA V
Sbjct: 121 LTDPARGMKGAVQKAEEILAKTPNAYLLQQFENPANPKIHYETTGPEMWKGSGGKVDAFV 180
Query: 181 SGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDV 240
SGIGTGGT+TGA KYLKE NP+IK+YGVEPVESAVLSGGKPGPHKIQGIGAGFIP VLDV
Sbjct: 181 SGIGTGGTITGAAKYLKEQNPDIKIYGVEPVESAVLSGGKPGPHKIQGIGAGFIPAVLDV 240
Query: 241 NLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPS 300
LLDETVQISSEEAIETAKLLALKEGLLVGISSGAA AAAI+IAKRPENAGKLI+V+FPS
Sbjct: 241 GLLDETVQISSEEAIETAKLLALKEGLLVGISSGAAAAAAIEIAKRPENAGKLIIVIFPS 300
Query: 301 FGERYLSSVLFESVKKEAESMVFEP 325
FGERYLS+VLFESV+KEAE+MVF P
Sbjct: 301 FGERYLSTVLFESVRKEAENMVFVP 325
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255542380|ref|XP_002512253.1| cysteine synthase, putative [Ricinus communis] gi|223548214|gb|EEF49705.1| cysteine synthase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 560 bits (1442), Expect = e-157, Method: Compositional matrix adjust.
Identities = 298/325 (91%), Positives = 312/325 (96%)
Query: 1 MVEEKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADA 60
MVEEKS IAKDVTEL+GKTPLVYLN +VDGCVARIAAKLEMMEPCSSVKDRIGYSMI DA
Sbjct: 1 MVEEKSAIAKDVTELVGKTPLVYLNHVVDGCVARIAAKLEMMEPCSSVKDRIGYSMITDA 60
Query: 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120
EEKGLI+PGESVLIEPTSGNTGIGLAFMAAAKGY+LIITMPASMSLERRMVL AFGAELV
Sbjct: 61 EEKGLIKPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERRMVLRAFGAELV 120
Query: 121 LTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALV 180
LTDPARGMKGAVQKAEEI KTPNSY+LQQFENPANPKIHYETTGPEIWKG+GGK+D V
Sbjct: 121 LTDPARGMKGAVQKAEEILAKTPNSYILQQFENPANPKIHYETTGPEIWKGSGGKVDFFV 180
Query: 181 SGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDV 240
SGIGTGGTVTGAG YL+E NP+IKL GVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDV
Sbjct: 181 SGIGTGGTVTGAGGYLREQNPDIKLIGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDV 240
Query: 241 NLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPS 300
+LLDE VQISSEEAIETAKLLALKEGLLVGISSGAA AAAI+IA+RPENAGKLIVV+FPS
Sbjct: 241 SLLDEVVQISSEEAIETAKLLALKEGLLVGISSGAAAAAAIKIARRPENAGKLIVVIFPS 300
Query: 301 FGERYLSSVLFESVKKEAESMVFEP 325
FGERYLSSVLFESVK+EAESMVFEP
Sbjct: 301 FGERYLSSVLFESVKREAESMVFEP 325
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224130736|ref|XP_002328363.1| predicted protein [Populus trichocarpa] gi|222838078|gb|EEE76443.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 559 bits (1441), Expect = e-157, Method: Compositional matrix adjust.
Identities = 292/325 (89%), Positives = 311/325 (95%)
Query: 1 MVEEKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADA 60
M EEK IAKDVTELIGKTPLVYLN +VDGCVAR+AAKLEMMEPCSSVKDRIGYSMI DA
Sbjct: 1 MAEEKGSIAKDVTELIGKTPLVYLNNVVDGCVARVAAKLEMMEPCSSVKDRIGYSMITDA 60
Query: 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120
EEKGLI+PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL+
Sbjct: 61 EEKGLIKPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELI 120
Query: 121 LTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALV 180
LTDPARG+ GAVQKAEEI KTPN+Y+LQQFENPANPK+HYETTGPE+WKG+GGK+DA V
Sbjct: 121 LTDPARGINGAVQKAEEILAKTPNAYILQQFENPANPKVHYETTGPEMWKGSGGKVDAFV 180
Query: 181 SGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDV 240
SGIGTGGT+TGA KYLKE NP+IK+YGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDV
Sbjct: 181 SGIGTGGTITGAAKYLKEQNPDIKIYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDV 240
Query: 241 NLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPS 300
LLDETVQISSEEAIETAKLLALKEGLLVGISSGAA AAAI+IAKRPENAGKLIVV+FPS
Sbjct: 241 GLLDETVQISSEEAIETAKLLALKEGLLVGISSGAAAAAAIEIAKRPENAGKLIVVIFPS 300
Query: 301 FGERYLSSVLFESVKKEAESMVFEP 325
FGERYLS+VLFESV+KEAE+MVF P
Sbjct: 301 FGERYLSTVLFESVRKEAENMVFVP 325
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255644573|gb|ACU22789.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 558 bits (1438), Expect = e-156, Method: Compositional matrix adjust.
Identities = 290/325 (89%), Positives = 310/325 (95%)
Query: 1 MVEEKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADA 60
M EKS IAKDVTELIGKTPLVYLN IVDGCVA++AAKLEMMEPCSSVKDRIG+SMI DA
Sbjct: 1 MAAEKSNIAKDVTELIGKTPLVYLNHIVDGCVAKVAAKLEMMEPCSSVKDRIGHSMIVDA 60
Query: 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120
EEKGLI PGESVLIEPTSGNTGIGLAFMAAAKGY+LIITMP+SMSLERR +L AFGAELV
Sbjct: 61 EEKGLITPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPSSMSLERRTILRAFGAELV 120
Query: 121 LTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALV 180
LTDPA+GMKGAVQKAEEIRDKTPNSY+LQQFENP NPK+HYETTGPEIWKG+ GK+DALV
Sbjct: 121 LTDPAKGMKGAVQKAEEIRDKTPNSYMLQQFENPTNPKVHYETTGPEIWKGSSGKVDALV 180
Query: 181 SGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDV 240
SGIGTGGTVTGAGKYLKE NP+IKLYG+EPVES +LSGGKPGPHKIQGIGAGFIPGVLDV
Sbjct: 181 SGIGTGGTVTGAGKYLKEQNPDIKLYGIEPVESPILSGGKPGPHKIQGIGAGFIPGVLDV 240
Query: 241 NLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPS 300
+LLDE VQISSEEAIETAKLLALKEGLLVGISSGAA AAA++IAKRPENAGKL+V VFPS
Sbjct: 241 DLLDEVVQISSEEAIETAKLLALKEGLLVGISSGAAAAAAVKIAKRPENAGKLVVAVFPS 300
Query: 301 FGERYLSSVLFESVKKEAESMVFEP 325
FGERYLSSVLFESVK+EAES+VFEP
Sbjct: 301 FGERYLSSVLFESVKREAESLVFEP 325
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|307136057|gb|ADN33908.1| cysteine synthase [Cucumis melo subsp. melo] | Back alignment and taxonomy information |
|---|
Score = 555 bits (1431), Expect = e-156, Method: Compositional matrix adjust.
Identities = 288/325 (88%), Positives = 308/325 (94%)
Query: 1 MVEEKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADA 60
MV+ KS IAKDVTELIG TPLVYLNR+VDGCVAR+AAKLEMMEPCSSVKDRIGYSMI+DA
Sbjct: 1 MVDTKSTIAKDVTELIGNTPLVYLNRVVDGCVARVAAKLEMMEPCSSVKDRIGYSMISDA 60
Query: 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120
E+ GLI PGESVLIEPTSGNTGIGLAF+AAAKGY+LII MPASMSLERR +L AFGAELV
Sbjct: 61 EKNGLISPGESVLIEPTSGNTGIGLAFIAAAKGYKLIICMPASMSLERRTILRAFGAELV 120
Query: 121 LTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALV 180
LTDPARGMKGAVQKAEEI+ KTPNSY+LQQFENPANPKIHYETTGPEIWKG+GGK+DALV
Sbjct: 121 LTDPARGMKGAVQKAEEIKAKTPNSYILQQFENPANPKIHYETTGPEIWKGSGGKVDALV 180
Query: 181 SGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDV 240
SGIGTGGTVTGAGKYLKE NP IKLYGVEPVESA+LSGGKPGPHKIQGIGAGFIPGVLDV
Sbjct: 181 SGIGTGGTVTGAGKYLKEQNPSIKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPGVLDV 240
Query: 241 NLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPS 300
NLLDE VQ+SSEE+IE AKLLALKEGLLVGISSGAA AAAI++AKRPENAGKLIV VFPS
Sbjct: 241 NLLDEVVQVSSEESIEMAKLLALKEGLLVGISSGAAAAAAIKLAKRPENAGKLIVAVFPS 300
Query: 301 FGERYLSSVLFESVKKEAESMVFEP 325
FGERYLS+VLFESVK+E E+M FEP
Sbjct: 301 FGERYLSTVLFESVKRETENMTFEP 325
|
Source: Cucumis melo subsp. melo Species: Cucumis melo Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|2493895|sp|Q43317.1|CYSK_CITLA RecName: Full=Cysteine synthase; Short=CSase; AltName: Full=Beta-PA/CSase; AltName: Full=Beta-pyrazolylalanine synthase; AltName: Full=L-mimosine synthase; AltName: Full=O-acetylserine (thiol)-lyase; Short=OAS-TL; AltName: Full=O-acetylserine sulfhydrylase gi|540497|dbj|BAA05965.1| cysteine synthase [Citrullus lanatus subsp. vulgaris] | Back alignment and taxonomy information |
|---|
Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust.
Identities = 291/325 (89%), Positives = 309/325 (95%)
Query: 1 MVEEKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADA 60
M + KS IAKDVTELIG TPLVYLNR+VDGCVAR+AAKLEMMEPCSSVKDRIGYSMI+DA
Sbjct: 1 MADAKSTIAKDVTELIGNTPLVYLNRVVDGCVARVAAKLEMMEPCSSVKDRIGYSMISDA 60
Query: 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120
E KGLI PGESVLIEPTSGNTGIGLAF+AAAKGYRLII MPASMSLERR +L AFGAELV
Sbjct: 61 ENKGLITPGESVLIEPTSGNTGIGLAFIAAAKGYRLIICMPASMSLERRTILRAFGAELV 120
Query: 121 LTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALV 180
LTDPARGMKGAVQKAEEI+ KTPNSY+LQQFENPANPKIHYETTGPEIW+G+GGKIDALV
Sbjct: 121 LTDPARGMKGAVQKAEEIKAKTPNSYILQQFENPANPKIHYETTGPEIWRGSGGKIDALV 180
Query: 181 SGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDV 240
SGIGTGGTVTGAGKYLKE NP IKLYGVEPVESA+LSGGKPGPHKIQGIGAGFIPGVLDV
Sbjct: 181 SGIGTGGTVTGAGKYLKEQNPNIKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPGVLDV 240
Query: 241 NLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPS 300
NLLDE +Q+SSEE+IETAKLLALKEGLLVGISSGAA AAAI+IAKRPENAGKLIV VFPS
Sbjct: 241 NLLDEVIQVSSEESIETAKLLALKEGLLVGISSGAAAAAAIRIAKRPENAGKLIVAVFPS 300
Query: 301 FGERYLSSVLFESVKKEAESMVFEP 325
FGERYLS+VLFESVK+E E+MVFEP
Sbjct: 301 FGERYLSTVLFESVKRETENMVFEP 325
|
Source: Citrullus lanatus subsp. vulgaris Species: Citrullus lanatus Genus: Citrullus Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388490632|gb|AFK33382.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 553 bits (1425), Expect = e-155, Method: Compositional matrix adjust.
Identities = 284/325 (87%), Positives = 308/325 (94%)
Query: 1 MVEEKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADA 60
M EEK+ +A DVTELIG TPLVYLNRIVDGCV RIAAKLEMMEPCSSVKDRIGYSMIADA
Sbjct: 1 MAEEKTTVANDVTELIGNTPLVYLNRIVDGCVGRIAAKLEMMEPCSSVKDRIGYSMIADA 60
Query: 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120
EEKGLI+PGESVLIE TSGNTGIGLAFMAAAKGY+LIITMP+SMSLERR +L AFGAELV
Sbjct: 61 EEKGLIKPGESVLIEATSGNTGIGLAFMAAAKGYKLIITMPSSMSLERRTILRAFGAELV 120
Query: 121 LTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALV 180
LTDPARGMKGAVQKAEEIR+KTPNSY+LQQFENPANPK+HYETTGPEIWK + GK+DALV
Sbjct: 121 LTDPARGMKGAVQKAEEIREKTPNSYILQQFENPANPKVHYETTGPEIWKSSNGKVDALV 180
Query: 181 SGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDV 240
SGIGTGGT+TGAGKYLKE NP +KLYGVEP ESA+LSGGKPGPHKIQGIGAGFIPG+LDV
Sbjct: 181 SGIGTGGTITGAGKYLKEQNPGVKLYGVEPSESAILSGGKPGPHKIQGIGAGFIPGILDV 240
Query: 241 NLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPS 300
++LDE VQ+SSEEA+ETAKLLALKEGLLVGISSGAA AAAI++A+RPEN GKLIVVVFPS
Sbjct: 241 DILDEVVQVSSEEAVETAKLLALKEGLLVGISSGAAAAAAIKLARRPENDGKLIVVVFPS 300
Query: 301 FGERYLSSVLFESVKKEAESMVFEP 325
FGERYLSSVLFE+ K+EAESMVFEP
Sbjct: 301 FGERYLSSVLFEATKREAESMVFEP 325
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255647610|gb|ACU24268.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 552 bits (1422), Expect = e-155, Method: Compositional matrix adjust.
Identities = 292/325 (89%), Positives = 310/325 (95%)
Query: 1 MVEEKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADA 60
M EK IAKDVTELIGKTPLVYLNRIVDGCVA++AAKLEMMEPCSSVKDRIGYSMI DA
Sbjct: 1 MAVEKLSIAKDVTELIGKTPLVYLNRIVDGCVAKVAAKLEMMEPCSSVKDRIGYSMIVDA 60
Query: 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120
EEKG I PGESVLIEPTSGNTGIGLAFMAAAKGY+LIITMP+SMSLERR +L AFGAELV
Sbjct: 61 EEKGFITPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPSSMSLERRTILRAFGAELV 120
Query: 121 LTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALV 180
LTDPA+GMKGAVQKAEEIRDKTPNSY+LQQFENPANPKIHYETTGPEIWKG+ GK+DALV
Sbjct: 121 LTDPAKGMKGAVQKAEEIRDKTPNSYILQQFENPANPKIHYETTGPEIWKGSSGKVDALV 180
Query: 181 SGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDV 240
SGIGTGGT+TGAGKYLK+ NP+IKLYG+EPVES +LSGGKPGPHKIQGIGAGFIPGVLDV
Sbjct: 181 SGIGTGGTITGAGKYLKDQNPDIKLYGIEPVESPILSGGKPGPHKIQGIGAGFIPGVLDV 240
Query: 241 NLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPS 300
+LLDE VQISSEEAIETAKLLALKEGLLVGISSGAA AAAI+IAKRPENAGKLI+ VFPS
Sbjct: 241 DLLDEVVQISSEEAIETAKLLALKEGLLVGISSGAAAAAAIKIAKRPENAGKLIIAVFPS 300
Query: 301 FGERYLSSVLFESVKKEAESMVFEP 325
FGERYLSSVLFESVK+EAESMVFEP
Sbjct: 301 FGERYLSSVLFESVKREAESMVFEP 325
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 325 | ||||||
| TAIR|locus:2130419 | 322 | OASA1 "O-acetylserine (thiol) | 0.981 | 0.990 | 0.755 | 1.4e-128 | |
| TAIR|locus:2043964 | 392 | OASB "O-acetylserine (thiol) l | 0.966 | 0.801 | 0.707 | 1.1e-117 | |
| TAIR|locus:2080417 | 433 | OASC "O-acetylserine (thiol) l | 0.966 | 0.725 | 0.694 | 9.1e-116 | |
| TAIR|locus:2114804 | 324 | CYSD1 "cysteine synthase D1" [ | 0.987 | 0.990 | 0.651 | 6.8e-111 | |
| TAIR|locus:2143814 | 323 | CYSD2 "cysteine synthase D2" [ | 0.993 | 1.0 | 0.643 | 1e-109 | |
| TAIR|locus:2143754 | 323 | DES1 "L-cysteine desulfhydrase | 0.993 | 1.0 | 0.631 | 1.9e-106 | |
| UNIPROTKB|Q1KLZ2 | 376 | CAS1 "L-3-cyanoalanine synthas | 0.966 | 0.835 | 0.563 | 7.4e-98 | |
| UNIPROTKB|Q76MX2 | 351 | PCAS-1 "Bifunctional L-3-cyano | 0.966 | 0.894 | 0.566 | 5.2e-97 | |
| UNIPROTKB|Q1KLZ1 | 375 | CAS2 "L-3-cyanoalanine synthas | 0.966 | 0.837 | 0.557 | 5.9e-96 | |
| UNIPROTKB|Q43153 | 368 | CYSC "Bifunctional L-3-cyanoal | 0.966 | 0.853 | 0.560 | 2e-95 |
| TAIR|locus:2130419 OASA1 "O-acetylserine (thiol) lyase (OAS-TL) isoform A1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1262 (449.3 bits), Expect = 1.4e-128, P = 1.4e-128
Identities = 241/319 (75%), Positives = 272/319 (85%)
Query: 6 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGL 65
S IAKDVTELIG TPLVYLN + +GCV R+AAKLEMMEPCSSVKDRIG+SMI+DAE+KGL
Sbjct: 3 SRIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGL 62
Query: 66 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 125
I+PGESVLIEPTSGNTG+GLAF AAAKGY+LIITMPASMS ERR++LLAFG ELVLTDPA
Sbjct: 63 IKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122
Query: 126 RGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXX 185
+GMKGA+ KAEEI KTPN Y+LQQFENPANPKIHYETTGPEIWKGTGGKID VS
Sbjct: 123 KGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGT 182
Query: 186 XXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDE 245
KYLKE N +KLYGVEPVESA+LSGGKPGPHKIQGIGAGFIP VL+V+L+DE
Sbjct: 183 GGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDE 242
Query: 246 TVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIVVVFPSFGERY 305
VQ+SS+E+I+ A+ LALKEGLLVGISSG +RPENAGKL V +FPSFGERY
Sbjct: 243 VVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENAGKLFVAIFPSFGERY 302
Query: 306 LSSVLFESVKKEAESMVFE 324
LS+VLF++ +KEAE+M FE
Sbjct: 303 LSTVLFDATRKEAEAMTFE 321
|
|
| TAIR|locus:2043964 OASB "O-acetylserine (thiol) lyase B" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1159 (413.0 bits), Expect = 1.1e-117, P = 1.1e-117
Identities = 222/314 (70%), Positives = 261/314 (83%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
IA + +LIGKTP+VYLN +V GCVA +AAKLE+MEPC SVKDRIGYSMI DAEEKGLI
Sbjct: 75 IADNAAQLIGKTPMVYLNNVVKGCVASVAAKLEIMEPCCSVKDRIGYSMITDAEEKGLIT 134
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
PG+SVL+E TSGNTGIGLAF+AA+KGY+LI+TMPASMSLERR++L AFGAELVLT+PA+G
Sbjct: 135 PGKSVLVESTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLRAFGAELVLTEPAKG 194
Query: 128 MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXXXX 187
M GA+QKAEEI KTPNSY+LQQF+NPANPKIHYETTGPEIW+ T GKID LV+
Sbjct: 195 MTGAIQKAEEILKKTPNSYMLQQFDNPANPKIHYETTGPEIWEDTRGKIDILVAGIGTGG 254
Query: 188 XXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETV 247
+++KE PE+K+ GVEP ESA+LSGGKPGPHKIQGIGAGF+P LD+ ++DE +
Sbjct: 255 TITGVGRFIKERKPELKVIGVEPTESAILSGGKPGPHKIQGIGAGFVPKNLDLAIVDEYI 314
Query: 248 QISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIVVVFPSFGERYLS 307
ISSEEAIET+K LAL+EGLLVGISSG KRPENAGKLI VVFPSFGERYLS
Sbjct: 315 AISSEEAIETSKQLALQEGLLVGISSGAAAAAAIQVAKRPENAGKLIAVVFPSFGERYLS 374
Query: 308 SVLFESVKKEAESM 321
+ LF+S+++E E M
Sbjct: 375 TQLFQSIREECEQM 388
|
|
| TAIR|locus:2080417 OASC "O-acetylserine (thiol) lyase isoform C" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1141 (406.7 bits), Expect = 9.1e-116, P = 9.1e-116
Identities = 218/314 (69%), Positives = 257/314 (81%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
IA +V++LIGKTP+VYLN I GCVA IAAKLE+MEPC SVKDRIGYSM+ DAE+KG I
Sbjct: 113 IADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFIS 172
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
PG+SVL+EPTSGNTGIGLAF+AA++GYRLI+TMPASMS+ERR++L AFGAELVLTDPA+G
Sbjct: 173 PGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKG 232
Query: 128 MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXXXX 187
M GAVQKAEEI TP++Y+LQQF+NPANPKIHYETTGPEIW T GK+D V+
Sbjct: 233 MTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGG 292
Query: 188 XXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETV 247
+++KE NP+ ++ GVEP ES +LSGGKPGPHKIQGIGAGFIP LD ++DE +
Sbjct: 293 TITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIPKNLDQKIMDEVI 352
Query: 248 QISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIVVVFPSFGERYLS 307
ISSEEAIETAK LALKEGL+VGISSG KRPENAGKLI VVFPSFGERYLS
Sbjct: 353 AISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPENAGKLIAVVFPSFGERYLS 412
Query: 308 SVLFESVKKEAESM 321
+ LF+S+++E E M
Sbjct: 413 TPLFQSIREEVEKM 426
|
|
| TAIR|locus:2114804 CYSD1 "cysteine synthase D1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1095 (390.5 bits), Expect = 6.8e-111, P = 6.8e-111
Identities = 209/321 (65%), Positives = 256/321 (79%)
Query: 1 MVEEKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADA 60
M E++ I D T+LIG TP+VYLN IVDGCVARIAAKLEMMEPCSSVK+RI Y MI DA
Sbjct: 1 MEEDRCSIKDDATQLIGNTPMVYLNNIVDGCVARIAAKLEMMEPCSSVKERIAYGMIKDA 60
Query: 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120
E+KGLI PG+S LIE TSGNTGIGLAF+ AAKGY++++TMP+SMSLER+++LLA GAE+
Sbjct: 61 EDKGLITPGKSTLIEATSGNTGIGLAFIGAAKGYKVVLTMPSSMSLERKIILLALGAEVH 120
Query: 121 LTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALV 180
LTDP++G++G + KAEEI K P+S +L+QF+NP+NP+ HY TTGPEIW+ + G++D LV
Sbjct: 121 LTDPSKGVQGIIDKAEEICSKNPDSIMLEQFKNPSNPQTHYRTTGPEIWRDSAGEVDILV 180
Query: 181 SXXXXXXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDV 240
+ ++LKE N + K+YGVEP ESAV+SGGKPG H IQGIGAG IP LD
Sbjct: 181 AGVGTGGTLSGSGRFLKEKNKDFKVYGVEPTESAVISGGKPGTHLIQGIGAGLIPDNLDF 240
Query: 241 NLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIVVVFPS 300
N+LDE +Q++S EAIETAKLLALKEGLLVGISSG KRPENAGKLIVV+FPS
Sbjct: 241 NVLDEVIQVTSVEAIETAKLLALKEGLLVGISSGAAAAAAIKVAKRPENAGKLIVVIFPS 300
Query: 301 FGERYLSSVLFESVKKEAESM 321
GERYLS+ LFESV+ EAE++
Sbjct: 301 GGERYLSTSLFESVRHEAENL 321
|
|
| TAIR|locus:2143814 CYSD2 "cysteine synthase D2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1084 (386.6 bits), Expect = 1.0e-109, P = 1.0e-109
Identities = 208/323 (64%), Positives = 254/323 (78%)
Query: 2 VEEKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAE 61
+E++ +I D+TELIG TP+VYLN +VDGCVARIAAKLEMMEPCSSVKDRI YSMI DAE
Sbjct: 1 MEDRCLIKNDITELIGNTPMVYLNNVVDGCVARIAAKLEMMEPCSSVKDRIAYSMIKDAE 60
Query: 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121
+KGLI PG+S LIEPT+GNTGIGLA M AA+GY++I+ MP++MSLERR++L A GAEL L
Sbjct: 61 DKGLITPGKSTLIEPTAGNTGIGLACMGAARGYKVILVMPSTMSLERRIILRALGAELHL 120
Query: 122 TDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVS 181
+D G+KG ++K E I KTP Y+ QQFENPANP+IHY TTGPEIW+ + GK+D LV+
Sbjct: 121 SDQRIGLKGMLEKTEAILSKTPGGYIPQQFENPANPEIHYRTTGPEIWRDSAGKVDILVA 180
Query: 182 XXXXXXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVN 241
K+LKE N +IK+ VEPVES VLSGG+PGPH IQGIG+G +P LD+
Sbjct: 181 GVGTGGTATGVGKFLKEQNKDIKVCVVEPVESPVLSGGQPGPHLIQGIGSGIVPFNLDLT 240
Query: 242 LLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIVVVFPSF 301
++DE +Q++ EEAIETAKLLALKEGLLVGISSG KRPENAGKLIVVVFPS
Sbjct: 241 IVDEIIQVAGEEAIETAKLLALKEGLLVGISSGAAAAAALKVAKRPENAGKLIVVVFPSG 300
Query: 302 GERYLSSVLFESVKKEAESMVFE 324
GERYLS+ LF+S++ EAE++ E
Sbjct: 301 GERYLSTKLFDSIRYEAENLPIE 323
|
|
| TAIR|locus:2143754 DES1 "L-cysteine desulfhydrase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1053 (375.7 bits), Expect = 1.9e-106, P = 1.9e-106
Identities = 204/323 (63%), Positives = 252/323 (78%)
Query: 2 VEEKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAE 61
+E++ +I DVTELIG TP+VYLN+IVDGCVARIAAKLEMMEPCSS+KDRI YSMI DAE
Sbjct: 1 MEDRVLIKNDVTELIGNTPMVYLNKIVDGCVARIAAKLEMMEPCSSIKDRIAYSMIKDAE 60
Query: 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121
+KGLI PG+S LIE T GNTGIGLA + A++GY++I+ MP++MSLERR++L A GAE+ L
Sbjct: 61 DKGLITPGKSTLIEATGGNTGIGLASIGASRGYKVILLMPSTMSLERRIILRALGAEVHL 120
Query: 122 TDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVS 181
TD + G+KG ++KA+EI KTP Y+ QF NP NP+IHY TTGPEIW+ + GK+D LV+
Sbjct: 121 TDISIGIKGQLEKAKEILSKTPGGYIPHQFINPENPEIHYRTTGPEIWRDSAGKVDILVA 180
Query: 182 XXXXXXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVN 241
K+LKE N +IK+ VEP ESAVLSGGKPGPH IQGIG+G IP LD++
Sbjct: 181 GVGTGGTVTGTGKFLKEKNKDIKVCVVEPSESAVLSGGKPGPHLIQGIGSGEIPANLDLS 240
Query: 242 LLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIVVVFPSF 301
++DE +Q++ EEAIET KLLA+KEGLLVGISSG KRPEN GKLIVV+FPS
Sbjct: 241 IVDEIIQVTGEEAIETTKLLAIKEGLLVGISSGASAAAALKVAKRPENVGKLIVVIFPSG 300
Query: 302 GERYLSSVLFESVKKEAESMVFE 324
GERYLS+ LFESV+ EAE++ E
Sbjct: 301 GERYLSTELFESVRYEAENLPVE 323
|
|
| UNIPROTKB|Q1KLZ2 CAS1 "L-3-cyanoalanine synthase 1, mitochondrial" [Malus x domestica (taxid:3750)] | Back alignment and assigned GO terms |
|---|
Score = 972 (347.2 bits), Expect = 7.4e-98, P = 7.4e-98
Identities = 177/314 (56%), Positives = 236/314 (75%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
I V++LIG+TP+VYLN++ +GC A IA K EM +P +S+KDR SMI DAEEKGLI
Sbjct: 55 IKTQVSQLIGRTPIVYLNKVTEGCGAYIAVKQEMFQPTASIKDRPALSMINDAEEKGLIT 114
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
PGE++LIEPTSGN GI +AFMAA +GY++++TMP+ SLERR+ + FGA+L+LTDP +G
Sbjct: 115 PGETILIEPTSGNMGISMAFMAAMRGYKMVLTMPSYTSLERRVCMRCFGADLILTDPTKG 174
Query: 128 MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXXXX 187
M G V+KA ++ + TPN+Y+LQQF NPAN K+H+ETTGPEIW+ T G++D V
Sbjct: 175 MGGTVKKAYDLLESTPNAYMLQQFSNPANTKVHFETTGPEIWEDTNGQVDIFVMGIGSGG 234
Query: 188 XXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETV 247
+YLK NP +++YGVEP ES VL+GGKPGPH I G G GF P +LD+++L+ +
Sbjct: 235 TVSGVGQYLKSKNPNVQIYGVEPAESNVLNGGKPGPHSIMGNGVGFKPDILDLDMLERVI 294
Query: 248 QISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIVVVFPSFGERYLS 307
+++SE+A+ A+ LALKEGL+VGISSG K+PEN GKLIV V PSFGERYLS
Sbjct: 295 EVTSEDAVNMARQLALKEGLMVGISSGANTVAAMELAKKPENKGKLIVTVHPSFGERYLS 354
Query: 308 SVLFESVKKEAESM 321
SVLF+ +++EAE+M
Sbjct: 355 SVLFQELRQEAENM 368
|
|
| UNIPROTKB|Q76MX2 PCAS-1 "Bifunctional L-3-cyanoalanine synthase/cysteine synthase 1, mitochondrial" [Solanum tuberosum (taxid:4113)] | Back alignment and assigned GO terms |
|---|
Score = 964 (344.4 bits), Expect = 5.2e-97, P = 5.2e-97
Identities = 178/314 (56%), Positives = 234/314 (74%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
I V++LIGKTPLVYLN++ +GC A IA K EMM+P SS+KDR ++MI DAE+KGLI
Sbjct: 32 IKTQVSQLIGKTPLVYLNKVSEGCGAYIAVKQEMMQPTSSIKDRPAFAMINDAEKKGLIT 91
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
PG++ LIEPTSGN GI +AFMAA KGY++I+TMP+ SLERR+ + AFGA+LV TDP +G
Sbjct: 92 PGKTTLIEPTSGNMGISMAFMAAMKGYKMILTMPSYTSLERRVTMRAFGADLVTTDPTKG 151
Query: 128 MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXXXX 187
M G ++KA ++ + TPN+Y+LQQF NPAN + H+ETTGPEIW+ T G +D V
Sbjct: 152 MGGTIKKAYDLLESTPNAYMLQQFSNPANTQAHFETTGPEIWEDTQGNVDIFVMGIGSGG 211
Query: 188 XXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETV 247
+YLK NP +K+YG+EP ES VL+GG PGPH+I G G GF P +LD+++++E +
Sbjct: 212 TVSGVGQYLKSKNPNVKIYGIEPTESNVLNGGNPGPHEITGNGVGFKPDILDMDVMEEVL 271
Query: 248 QISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIVVVFPSFGERYLS 307
+SSEE++ A+ LALKEGL+VGISSG RPEN GKLIV + PSFGERYLS
Sbjct: 272 MVSSEESVNMARELALKEGLMVGISSGANTVAALRLANRPENKGKLIVTIHPSFGERYLS 331
Query: 308 SVLFESVKKEAESM 321
SVL+E ++KEA++M
Sbjct: 332 SVLYEDIRKEAQNM 345
|
|
| UNIPROTKB|Q1KLZ1 CAS2 "L-3-cyanoalanine synthase 2, mitochondrial" [Malus x domestica (taxid:3750)] | Back alignment and assigned GO terms |
|---|
Score = 954 (340.9 bits), Expect = 5.9e-96, P = 5.9e-96
Identities = 175/314 (55%), Positives = 233/314 (74%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
I V++LIG+TP+VYLN++ +GC A IA K EM +P +S+KDR SMI DAEEKGLI
Sbjct: 56 IKTQVSQLIGRTPIVYLNKVTEGCGAFIAVKQEMFQPTASIKDRPALSMINDAEEKGLIT 115
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
PGE+ LIEPTSGN GI +AFMAA KGY++++TMP+ SLERR+ + FGA+L+LTDP +G
Sbjct: 116 PGETTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVCMRCFGADLILTDPTKG 175
Query: 128 MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXXXX 187
M G V+KA ++ + TPN+++LQQF NPAN K+H+ETTGPEIW+ T G++D V
Sbjct: 176 MGGTVKKAYDLLESTPNAFMLQQFSNPANTKVHFETTGPEIWEDTNGQVDIFVMGIGSGG 235
Query: 188 XXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETV 247
+YLK NP +++YGVEP ES VL+GGKPGPH I G G GF P +LD+++++ +
Sbjct: 236 TVSGVGQYLKSKNPNVQIYGVEPAESNVLNGGKPGPHSITGNGVGFKPDILDMDMMERVI 295
Query: 248 QISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIVVVFPSFGERYLS 307
++ SE+A+ A+ LALKEGL+VGISSG K+PEN GKLIV V SFGERYLS
Sbjct: 296 EVRSEDAVNMARQLALKEGLMVGISSGANTVAAMELAKKPENKGKLIVTVHASFGERYLS 355
Query: 308 SVLFESVKKEAESM 321
SVLF+ +++EAE+M
Sbjct: 356 SVLFQDLRQEAENM 369
|
|
| UNIPROTKB|Q43153 CYSC "Bifunctional L-3-cyanoalanine synthase/cysteine synthase, mitochondrial" [Spinacia oleracea (taxid:3562)] | Back alignment and assigned GO terms |
|---|
Score = 949 (339.1 bits), Expect = 2.0e-95, P = 2.0e-95
Identities = 176/314 (56%), Positives = 237/314 (75%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
I +V++LIG+TPLVYL++I +G A IA K EMM+P +SVKDR +MI DAE+KGLI
Sbjct: 49 IKTNVSQLIGRTPLVYLSKISEGSGAYIAVKQEMMQPTASVKDRPALAMIEDAEKKGLIS 108
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
PG++VLIEPTSGN GI +AFMAA KGY++++TMP+ S+ERR+V+ AFGA+L+LTDP +G
Sbjct: 109 PGKTVLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSMERRVVMRAFGADLILTDPDKG 168
Query: 128 MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXXXX 187
M G V+KA ++ D TP+ ++LQQF NPAN ++H+ETTGPEIW+ T GK+D V
Sbjct: 169 MGGTVKKANQLLDSTPDGFMLQQFNNPANTQVHFETTGPEIWEDTQGKVDIFVMGIGSGG 228
Query: 188 XXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETV 247
+YLK NP +K+YGVEP ES +L+GGKPGPH I G G GF P +LD++++D +
Sbjct: 229 TVSGVGRYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPEILDMDVMDAVL 288
Query: 248 QISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIVVVFPSFGERYLS 307
++ S++A++ A+ LAL+EGLLVGISSG KRPEN GKLIV + PSFGERYLS
Sbjct: 289 EVKSDDAVKMARQLALQEGLLVGISSGANTIAALDLAKRPENKGKLIVTIHPSFGERYLS 348
Query: 308 SVLFESVKKEAESM 321
S LF+ +++EAE+M
Sbjct: 349 SALFKELREEAENM 362
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| P0A535 | CYSK_MYCBO | 2, ., 5, ., 1, ., 4, 7 | 0.5993 | 0.9415 | 0.9870 | yes | no |
| P0A534 | CYSK_MYCTU | 2, ., 5, ., 1, ., 4, 7 | 0.5993 | 0.9415 | 0.9870 | yes | no |
| P57171 | CYSK_BUCAI | 2, ., 5, ., 1, ., 4, 7 | 0.5333 | 0.9292 | 0.9587 | yes | no |
| P63871 | CYSK_STAAN | 2, ., 5, ., 1, ., 4, 7 | 0.5264 | 0.9169 | 0.9612 | yes | no |
| P63872 | CYSK_STAAW | 2, ., 5, ., 1, ., 4, 7 | 0.5264 | 0.9169 | 0.9612 | yes | no |
| P37887 | CYSK_BACSU | 2, ., 5, ., 1, ., 4, 7 | 0.5686 | 0.9292 | 0.9805 | yes | no |
| P31300 | CYSKP_CAPAN | 2, ., 5, ., 1, ., 4, 7 | 0.7452 | 0.9353 | 0.8128 | N/A | no |
| P45040 | CYSK_HAEIN | 2, ., 5, ., 1, ., 4, 7 | 0.5221 | 0.9384 | 0.9651 | yes | no |
| P63870 | CYSK_STAAM | 2, ., 5, ., 1, ., 4, 7 | 0.5264 | 0.9169 | 0.9612 | yes | no |
| P47999 | CYSKP_ARATH | 2, ., 5, ., 1, ., 4, 7 | 0.7643 | 0.9661 | 0.8010 | no | no |
| P47998 | CYSK1_ARATH | 2, ., 5, ., 1, ., 4, 7 | 0.8119 | 0.9815 | 0.9906 | yes | no |
| O81155 | CYSKP_SOLTU | 2, ., 5, ., 1, ., 4, 7 | 0.7643 | 0.9661 | 0.8134 | N/A | no |
| Q8KA48 | CYSK_BUCAP | 2, ., 5, ., 1, ., 4, 7 | 0.55 | 0.9415 | 0.9503 | yes | no |
| P0ABK6 | CYSK_ECO57 | 2, ., 5, ., 1, ., 4, 7 | 0.5448 | 0.9538 | 0.9597 | N/A | no |
| P38076 | CYSK_WHEAT | 2, ., 5, ., 1, ., 4, 7 | 0.8391 | 0.9753 | 0.9753 | N/A | no |
| P0ABK5 | CYSK_ECOLI | 4, ., 5, ., 1, ., 5 | 0.5448 | 0.9538 | 0.9597 | N/A | no |
| Q6GJF8 | CYSK_STAAR | 2, ., 5, ., 1, ., 4, 7 | 0.5264 | 0.9169 | 0.9612 | yes | no |
| Q6GBX5 | CYSK_STAAS | 2, ., 5, ., 1, ., 4, 7 | 0.5264 | 0.9169 | 0.9612 | yes | no |
| O81154 | CYSK_SOLTU | 2, ., 5, ., 1, ., 4, 7 | 0.8338 | 1.0 | 1.0 | N/A | no |
| Q43153 | CYSC_SPIOL | 4, ., 4, ., 1, ., 9 | 0.6050 | 0.9661 | 0.8532 | N/A | no |
| Q5HIG2 | CYSK_STAAC | 2, ., 5, ., 1, ., 4, 7 | 0.5264 | 0.9169 | 0.9612 | yes | no |
| P0A1E4 | CYSK_SALTI | 2, ., 5, ., 1, ., 4, 7 | 0.5541 | 0.9538 | 0.9597 | N/A | no |
| P32260 | CYSKP_SPIOL | 2, ., 5, ., 1, ., 4, 7 | 0.7261 | 0.9661 | 0.8198 | N/A | no |
| P0A1E3 | CYSK_SALTY | 2, ., 5, ., 1, ., 4, 7 | 0.5541 | 0.9538 | 0.9597 | yes | no |
| Q8CMT6 | CYSK_STAES | 2, ., 5, ., 1, ., 4, 7 | 0.5249 | 0.9138 | 0.9580 | yes | no |
| Q5XAQ3 | CYSK_STRP6 | 2, ., 5, ., 1, ., 4, 7 | 0.5457 | 0.9292 | 0.9648 | N/A | no |
| Q9FS29 | CAS2_SOLTU | 4, ., 4, ., 1, ., 9 | 0.5859 | 0.9661 | 0.9048 | N/A | no |
| P73410 | CYSK_SYNY3 | 2, ., 5, ., 1, ., 4, 7 | 0.6129 | 0.9476 | 0.9871 | N/A | no |
| O32978 | CYSK_MYCLE | 2, ., 5, ., 1, ., 4, 7 | 0.5888 | 0.9323 | 0.9774 | yes | no |
| Q5HRP1 | CYSK_STAEQ | 2, ., 5, ., 1, ., 4, 7 | 0.5249 | 0.9138 | 0.9580 | yes | no |
| Q1KLZ2 | CAS1_MALDO | 4, ., 4, ., 1, ., 9 | 0.6082 | 0.9661 | 0.8351 | N/A | no |
| Q1KLZ1 | CAS2_MALDO | 4, ., 4, ., 1, ., 9 | 0.6019 | 0.9661 | 0.8373 | N/A | no |
| Q43317 | CYSK_CITLA | 2, ., 5, ., 1, ., 5, 2 | 0.8953 | 1.0 | 1.0 | N/A | no |
| Q76MX2 | CAS1_SOLTU | 4, ., 4, ., 1, ., 9 | 0.6114 | 0.9661 | 0.8945 | N/A | no |
| Q00834 | CYSK_SPIOL | 2, ., 5, ., 1, ., 4, 7 | 0.8703 | 0.9969 | 0.9969 | N/A | no |
| P80608 | CYSK_MAIZE | 2, ., 5, ., 1, ., 4, 7 | 0.8369 | 1.0 | 1.0 | N/A | no |
| Q9XEA8 | CYSK2_ORYSJ | 2, ., 5, ., 1, ., 4, 7 | 0.8215 | 1.0 | 1.0 | no | no |
| P71128 | CYSM_CAMJE | 2, ., 5, ., 1, ., 4, 7 | 0.4655 | 0.9076 | 0.9866 | yes | no |
| O23733 | CYSK1_BRAJU | 2, ., 5, ., 1, ., 4, 7 | 0.8181 | 0.9815 | 0.9906 | N/A | no |
| Q7DDL5 | CYSK_NEIMB | 2, ., 5, ., 1, ., 4, 7 | 0.5803 | 0.9323 | 0.9774 | yes | no |
| Q9XEA6 | CYSK1_ORYSJ | 2, ., 5, ., 1, ., 4, 7 | 0.8391 | 0.9753 | 0.9875 | yes | no |
| O23735 | CYSK2_BRAJU | 2, ., 5, ., 1, ., 4, 7 | 0.8138 | 0.9753 | 0.9783 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| eugene3.00130338 | RecName- Full=Cysteine synthase; EC=2.5.1.47; (326 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| estExt_fgenesh4_pm.C_LG_XV0472 | serine O-acetyltransferase (EC-2.3.1.30) (293 aa) | • | • | • | • | 0.942 | |||||
| estExt_fgenesh4_pg.C_410108 | serine O-acetyltransferase (EC-2.3.1.30) (294 aa) | • | • | • | • | 0.941 | |||||
| estExt_fgenesh4_pm.C_LG_I1139 | serine O-acetyltransferase (EC-2.3.1.30) (334 aa) | • | • | • | • | 0.938 | |||||
| estExt_fgenesh4_pg.C_LG_V0392 | hypothetical protein (395 aa) | • | • | • | 0.923 | ||||||
| gw1.IX.3567.1 | sulfite reductase (EC-1.8.7.1) (576 aa) | • | • | 0.917 | |||||||
| gw1.I.1513.1 | sulfite reductase (EC-1.8.7.1) (634 aa) | • | • | 0.914 | |||||||
| estExt_Genewise1_v1.C_LG_I4741 | phosphateglycerate kinase (EC-2.5.1.47) (424 aa) | • | • | • | • | 0.907 | |||||
| gw1.XIV.1323.1 | cysteine synthase/L-3-cyanoalanine synthase (EC-4.4.1.9) (342 aa) | • | • | • | 0.902 | ||||||
| grail3.0039007102 | RecName- Full=Cysteine synthase; EC=2.5.1.47; (375 aa) | • | • | • | 0.902 | ||||||
| eugene3.00700109 | hypothetical protein (324 aa) | • | • | • | 0.901 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 325 | |||
| PLN02565 | 322 | PLN02565, PLN02565, cysteine synthase | 0.0 | |
| TIGR01136 | 299 | TIGR01136, cysKM, cysteine synthase | 1e-173 | |
| PLN00011 | 323 | PLN00011, PLN00011, cysteine synthase | 1e-172 | |
| TIGR01139 | 298 | TIGR01139, cysK, cysteine synthase A | 1e-169 | |
| PLN03013 | 429 | PLN03013, PLN03013, cysteine synthase | 1e-163 | |
| cd01561 | 291 | cd01561, CBS_like, CBS_like: This subgroup include | 1e-160 | |
| PLN02556 | 368 | PLN02556, PLN02556, cysteine synthase/L-3-cyanoala | 1e-158 | |
| COG0031 | 300 | COG0031, CysK, Cysteine synthase [Amino acid trans | 1e-151 | |
| PRK10717 | 330 | PRK10717, PRK10717, cysteine synthase A; Provision | 1e-119 | |
| PRK11761 | 296 | PRK11761, cysM, cysteine synthase B; Provisional | 1e-106 | |
| TIGR01138 | 290 | TIGR01138, cysM, cysteine synthase B | 3e-95 | |
| TIGR01137 | 454 | TIGR01137, cysta_beta, cystathionine beta-synthase | 5e-95 | |
| TIGR03945 | 304 | TIGR03945, PLP_SbnA_fam, 2,3-diaminopropionate bio | 8e-79 | |
| cd00640 | 244 | cd00640, Trp-synth-beta_II, Tryptophan synthase be | 2e-77 | |
| pfam00291 | 295 | pfam00291, PALP, Pyridoxal-phosphate dependent enz | 4e-68 | |
| PLN02356 | 423 | PLN02356, PLN02356, phosphateglycerate kinase | 9e-37 | |
| COG1171 | 347 | COG1171, IlvA, Threonine dehydratase [Amino acid t | 6e-21 | |
| cd01562 | 304 | cd01562, Thr-dehyd, Threonine dehydratase: The fir | 2e-19 | |
| TIGR01127 | 380 | TIGR01127, ilvA_1Cterm, threonine ammonia-lyase, m | 6e-16 | |
| cd01563 | 324 | cd01563, Thr-synth_1, Threonine synthase is a pyri | 2e-13 | |
| TIGR01124 | 499 | TIGR01124, ilvA_2Cterm, threonine ammonia-lyase, b | 2e-11 | |
| PRK06815 | 317 | PRK06815, PRK06815, hypothetical protein; Provisio | 2e-11 | |
| PRK12483 | 521 | PRK12483, PRK12483, threonine dehydratase; Reviewe | 3e-10 | |
| PRK06382 | 406 | PRK06382, PRK06382, threonine dehydratase; Provisi | 8e-09 | |
| PLN02550 | 591 | PLN02550, PLN02550, threonine dehydratase | 1e-08 | |
| PRK08526 | 403 | PRK08526, PRK08526, threonine dehydratase; Provisi | 5e-08 | |
| COG0498 | 411 | COG0498, ThrC, Threonine synthase [Amino acid tran | 9e-08 | |
| PRK06608 | 338 | PRK06608, PRK06608, threonine dehydratase; Provisi | 4e-07 | |
| PRK06721 | 352 | PRK06721, PRK06721, threonine synthase; Reviewed | 2e-06 | |
| TIGR02079 | 409 | TIGR02079, THD1, threonine dehydratase | 3e-06 | |
| PRK06381 | 319 | PRK06381, PRK06381, threonine synthase; Validated | 4e-06 | |
| PRK09224 | 504 | PRK09224, PRK09224, threonine dehydratase; Reviewe | 4e-06 | |
| PRK08638 | 333 | PRK08638, PRK08638, threonine dehydratase; Validat | 1e-05 | |
| TIGR00263 | 385 | TIGR00263, trpB, tryptophan synthase, beta subunit | 2e-05 | |
| PRK08329 | 347 | PRK08329, PRK08329, threonine synthase; Validated | 5e-05 | |
| PRK08246 | 310 | PRK08246, PRK08246, threonine dehydratase; Provisi | 9e-05 | |
| PRK05638 | 442 | PRK05638, PRK05638, threonine synthase; Validated | 1e-04 | |
| PRK06450 | 338 | PRK06450, PRK06450, threonine synthase; Validated | 2e-04 | |
| PRK08639 | 420 | PRK08639, PRK08639, threonine dehydratase; Validat | 2e-04 | |
| PRK08198 | 404 | PRK08198, PRK08198, threonine dehydratase; Provisi | 3e-04 | |
| PRK06352 | 351 | PRK06352, PRK06352, threonine synthase; Validated | 4e-04 | |
| PRK13803 | 610 | PRK13803, PRK13803, bifunctional phosphoribosylant | 5e-04 | |
| PRK06110 | 322 | PRK06110, PRK06110, hypothetical protein; Provisio | 6e-04 | |
| COG0133 | 396 | COG0133, TrpB, Tryptophan synthase beta chain [Ami | 0.001 | |
| cd06446 | 365 | cd06446, Trp-synth_B, Tryptophan synthase-beta: Tr | 0.001 | |
| TIGR03528 | 396 | TIGR03528, 2_3_DAP_am_ly, diaminopropionate ammoni | 0.003 | |
| PRK08813 | 349 | PRK08813, PRK08813, threonine dehydratase; Provisi | 0.003 |
| >gnl|CDD|166206 PLN02565, PLN02565, cysteine synthase | Back alignment and domain information |
|---|
Score = 609 bits (1572), Expect = 0.0
Identities = 297/322 (92%), Positives = 313/322 (97%)
Query: 4 EKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEK 63
EKS IAKDVTELIGKTPLVYLN +VDGCVARIAAKLEMMEPCSSVKDRIGYSMI DAEEK
Sbjct: 1 EKSSIAKDVTELIGKTPLVYLNNVVDGCVARIAAKLEMMEPCSSVKDRIGYSMITDAEEK 60
Query: 64 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 123
GLI+PGESVLIEPTSGNTGIGLAFMAAAKGY+LIITMPASMSLERR++LLAFGAELVLTD
Sbjct: 61 GLIKPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERRIILLAFGAELVLTD 120
Query: 124 PARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGI 183
PA+GMKGAVQKAEEI KTPNSY+LQQFENPANPKIHYETTGPEIWKGTGGK+DA VSGI
Sbjct: 121 PAKGMKGAVQKAEEILAKTPNSYILQQFENPANPKIHYETTGPEIWKGTGGKVDAFVSGI 180
Query: 184 GTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLL 243
GTGGT+TGAGKYLKE NP+IKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDV+LL
Sbjct: 181 GTGGTITGAGKYLKEQNPDIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVDLL 240
Query: 244 DETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGE 303
DE VQ+SS+EAIETAKLLALKEGLLVGISSGAA AAAI+IAKRPENAGKLIVV+FPSFGE
Sbjct: 241 DEVVQVSSDEAIETAKLLALKEGLLVGISSGAAAAAAIKIAKRPENAGKLIVVIFPSFGE 300
Query: 304 RYLSSVLFESVKKEAESMVFEP 325
RYLSSVLFESVKKEAE+MVFEP
Sbjct: 301 RYLSSVLFESVKKEAENMVFEP 322
|
Length = 322 |
| >gnl|CDD|233286 TIGR01136, cysKM, cysteine synthase | Back alignment and domain information |
|---|
Score = 480 bits (1238), Expect = e-173
Identities = 193/300 (64%), Positives = 239/300 (79%), Gaps = 1/300 (0%)
Query: 12 VTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGES 71
+ ELIG TPLV LNR+ GC AR+ AKLE P SVKDRI SMI DAE++GL++PG+
Sbjct: 1 IEELIGNTPLVRLNRLAPGCDARVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPGD- 59
Query: 72 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGA 131
+IE TSGNTGI LA +AAAKGY+LI+TMP +MSLERR +L A+GAEL+LT GMKGA
Sbjct: 60 TIIEATSGNTGIALAMVAAAKGYKLILTMPETMSLERRKLLRAYGAELILTPAEEGMKGA 119
Query: 132 VQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTG 191
+ KAEE+ +T +L QFENPANP+ HY+TTGPEIW+ T G+ID V+G+GTGGT+TG
Sbjct: 120 IDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDTDGRIDHFVAGVGTGGTITG 179
Query: 192 AGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISS 251
G+YLKE NP IK+ VEP ES VLSGG+PGPHKIQGIGAGFIP +LD++L+DE + +S
Sbjct: 180 VGRYLKEQNPNIKIVAVEPAESPVLSGGEPGPHKIQGIGAGFIPKILDLSLIDEVITVSD 239
Query: 252 EEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLF 311
E+AIETA+ LA +EG+LVGISSGAA AAA+++AKR ENA K+IV + P GERYLS+ LF
Sbjct: 240 EDAIETARRLAREEGILVGISSGAAVAAALKLAKRLENADKVIVAILPDTGERYLSTGLF 299
|
This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff [Amino acid biosynthesis, Serine family]. Length = 299 |
| >gnl|CDD|177651 PLN00011, PLN00011, cysteine synthase | Back alignment and domain information |
|---|
Score = 479 bits (1235), Expect = e-172
Identities = 228/322 (70%), Positives = 275/322 (85%)
Query: 3 EEKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEE 62
E++ +I DVTELIG TP+VYLN IVDGCVARIAAKLEMMEPCSSVKDRI YSMI DAE+
Sbjct: 2 EDRCLIKNDVTELIGNTPMVYLNNIVDGCVARIAAKLEMMEPCSSVKDRIAYSMIKDAED 61
Query: 63 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 122
KGLI PG+S LIE T+GNTGIGLA + AA+GY++I+ MP++MSLERR++L A GAE+ LT
Sbjct: 62 KGLITPGKSTLIEATAGNTGIGLACIGAARGYKVILVMPSTMSLERRIILRALGAEVHLT 121
Query: 123 DPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSG 182
D + G+KG ++KAEEI KTP Y+ QQFENPANP+IHY TTGPEIW+ + GK+D LV+G
Sbjct: 122 DQSIGLKGMLEKAEEILSKTPGGYIPQQFENPANPEIHYRTTGPEIWRDSAGKVDILVAG 181
Query: 183 IGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNL 242
+GTGGT TG GK+LKE N +IK+ VEPVESAVLSGG+PGPH IQGIG+G IP LD+ +
Sbjct: 182 VGTGGTATGVGKFLKEKNKDIKVCVVEPVESAVLSGGQPGPHLIQGIGSGIIPFNLDLTI 241
Query: 243 LDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFG 302
+DE +Q++ EEAIETAKLLALKEGLLVGISSGAA AAA+++AKRPENAGKLIVV+FPS G
Sbjct: 242 VDEIIQVTGEEAIETAKLLALKEGLLVGISSGAAAAAALKVAKRPENAGKLIVVIFPSGG 301
Query: 303 ERYLSSVLFESVKKEAESMVFE 324
ERYLS+ LFESV+ EAE++ E
Sbjct: 302 ERYLSTKLFESVRYEAENLPIE 323
|
Length = 323 |
| >gnl|CDD|233288 TIGR01139, cysK, cysteine synthase A | Back alignment and domain information |
|---|
Score = 471 bits (1213), Expect = e-169
Identities = 198/301 (65%), Positives = 242/301 (80%), Gaps = 4/301 (1%)
Query: 12 VTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGES 71
++ELIG TPLV LNRI +GC A + KLE P SVKDRI +MI DAE++GL++PG+
Sbjct: 1 ISELIGNTPLVRLNRI-EGCNANVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPGK- 58
Query: 72 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGA 131
++EPTSGNTGI LA +AAA+GY+LI+TMP +MS+ERR +L A+GAELVLT A GMKGA
Sbjct: 59 TIVEPTSGNTGIALAMVAAARGYKLILTMPETMSIERRKLLKAYGAELVLTPGAEGMKGA 118
Query: 132 VQKAEEIRDKTPNSYV-LQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVT 190
+ KAEEI TPNSY LQQFENPANP+IH +TTGPEIW+ T GK+DA V+G+GTGGT+T
Sbjct: 119 IAKAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWRDTDGKLDAFVAGVGTGGTIT 178
Query: 191 GAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQIS 250
G G+ LKE P IK+ VEP ES VLSGGKPGPHKIQGIGAGFIP L+ +++DE + +S
Sbjct: 179 GVGEVLKEQKPNIKIVAVEPAESPVLSGGKPGPHKIQGIGAGFIPKNLNRSVIDEVITVS 238
Query: 251 SEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVL 310
EEAIETA+ LA +EG+LVGISSGAA AAA+++AKRPE KLIVV+ PS GERYLS+ L
Sbjct: 239 DEEAIETARRLAAEEGILVGISSGAAVAAALKLAKRPE-PDKLIVVILPSTGERYLSTPL 297
Query: 311 F 311
F
Sbjct: 298 F 298
|
This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate [Amino acid biosynthesis, Serine family]. Length = 298 |
| >gnl|CDD|178587 PLN03013, PLN03013, cysteine synthase | Back alignment and domain information |
|---|
Score = 462 bits (1189), Expect = e-163
Identities = 221/314 (70%), Positives = 263/314 (83%), Gaps = 1/314 (0%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
IA +V++LIGKTP+VYLN I GCVA IAAKLE+MEPC SVKDRIGYSM+ DAE+KG I
Sbjct: 113 IADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFIS 172
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
PG+SVL+EPTSGNTGIGLAF+AA++GYRLI+TMPASMS+ERR++L AFGAELVLTDPA+G
Sbjct: 173 PGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKG 232
Query: 128 MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGG 187
M GAVQKAEEI TP++Y+LQQF+NPANPKIHYETTGPEIW T GK+D V+GIGTGG
Sbjct: 233 MTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGG 292
Query: 188 TVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETV 247
T+TG G+++KE NP+ ++ GVEP ES +LSGGKPGPHKIQGIGAGFIP LD ++DE +
Sbjct: 293 TITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIPKNLDQKIMDEVI 352
Query: 248 QISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLS 307
ISSEEAIETAK LALKEGL+VGISSGAA AAAI++AKRPENAGKLI V + G R +
Sbjct: 353 AISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPENAGKLIAVSLFASG-RDIY 411
Query: 308 SVLFESVKKEAESM 321
+ S+ +
Sbjct: 412 TPRCSSLSGKRWRK 425
|
Length = 429 |
| >gnl|CDD|107204 cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase | Back alignment and domain information |
|---|
Score = 449 bits (1158), Expect = e-160
Identities = 178/293 (60%), Positives = 219/293 (74%), Gaps = 4/293 (1%)
Query: 17 GKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEP 76
G TPLV LNR+ G A I AKLE P SVKDRI MI DAE++GL++PG + +IEP
Sbjct: 1 GNTPLVRLNRLSPGTGAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPG-TTIIEP 59
Query: 77 TSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA--RGMKGAVQK 134
TSGNTGIGLA +AAAKGYR II MP +MS E+R +L A GAE++LT A GMKGA+ K
Sbjct: 60 TSGNTGIGLAMVAAAKGYRFIIVMPETMSEEKRKLLRALGAEVILTPEAEADGMKGAIAK 119
Query: 135 AEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGK 194
A E+ +TPN++ L QFENPANP+ HYETT PEIW+ GK+DA V+G+GTGGT+TG +
Sbjct: 120 ARELAAETPNAFWLNQFENPANPEAHYETTAPEIWEQLDGKVDAFVAGVGTGGTITGVAR 179
Query: 195 YLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEA 254
YLKE NP +++ GV+PV S + SGG PGPHKI+GIGAGFIP LD +L+DE V++S EEA
Sbjct: 180 YLKEKNPNVRIVGVDPVGSVLFSGGPPGPHKIEGIGAGFIPENLDRSLIDEVVRVSDEEA 239
Query: 255 IETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLS 307
A+ LA +EGLLVG SSGAA AAA+++AKR GK IV + P GERYLS
Sbjct: 240 FAMARRLAREEGLLVGGSSGAAVAAALKLAKRLG-PGKTIVTILPDSGERYLS 291
|
CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine. Length = 291 |
| >gnl|CDD|178171 PLN02556, PLN02556, cysteine synthase/L-3-cyanoalanine synthase | Back alignment and domain information |
|---|
Score = 447 bits (1152), Expect = e-158
Identities = 198/314 (63%), Positives = 255/314 (81%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
I D ++LIGKTPLVYLN++ +GC A IAAK EM +P SS+KDR +MI DAE+K LI
Sbjct: 49 IKTDASQLIGKTPLVYLNKVTEGCGAYIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLIT 108
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
PG++ LIEPTSGN GI LAFMAA KGY++I+TMP+ SLERR+ + AFGAELVLTDP +G
Sbjct: 109 PGKTTLIEPTSGNMGISLAFMAAMKGYKMILTMPSYTSLERRVTMRAFGAELVLTDPTKG 168
Query: 128 MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGG 187
M G V+KA E+ + TP++++LQQF NPAN ++H+ETTGPEIW+ T G++D V GIG+GG
Sbjct: 169 MGGTVKKAYELLESTPDAFMLQQFSNPANTQVHFETTGPEIWEDTLGQVDIFVMGIGSGG 228
Query: 188 TVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETV 247
TV+G GKYLK NP +K+YGVEP ES VL+GGKPGPH I G G GF P +LD++++++ +
Sbjct: 229 TVSGVGKYLKSKNPNVKIYGVEPAESNVLNGGKPGPHHITGNGVGFKPDILDMDVMEKVL 288
Query: 248 QISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLS 307
++SSE+A+ A+ LALKEGL+VGISSGA T AA+++AK PEN GKLIV V PSFGERYLS
Sbjct: 289 EVSSEDAVNMARELALKEGLMVGISSGANTVAALRLAKMPENKGKLIVTVHPSFGERYLS 348
Query: 308 SVLFESVKKEAESM 321
SVLF+ ++KEAE+M
Sbjct: 349 SVLFQELRKEAENM 362
|
Length = 368 |
| >gnl|CDD|223110 COG0031, CysK, Cysteine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 427 bits (1100), Expect = e-151
Identities = 178/302 (58%), Positives = 226/302 (74%), Gaps = 5/302 (1%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
I + + +LIG TPLV LNR+ G I AKLE P SVKDRI MI DAE++GL++
Sbjct: 1 IYESILDLIGNTPLVRLNRLSPGTGVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLK 60
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
PG ++E TSGNTGI LA +AAAKGYRLII MP +MS ERR +L A GAE++LT A G
Sbjct: 61 PG-GTIVEATSGNTGIALAMVAAAKGYRLIIVMPETMSQERRKLLRALGAEVILTPGAPG 119
Query: 128 -MKGAVQKAEEIRDKTPNSYV-LQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGT 185
MKGA+++A+E+ + P V L QFENPANP+ HYETTGPEIW+ T GK+DA V+G+GT
Sbjct: 120 NMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGPEIWQQTDGKVDAFVAGVGT 179
Query: 186 GGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDE 245
GGT+TG +YLKE NP +++ V+P S +LSGG+ GPHKI+GIGAGF+P LD++L+DE
Sbjct: 180 GGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGE-GPHKIEGIGAGFVPENLDLDLIDE 238
Query: 246 TVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERY 305
+++S EEAI TA+ LA +EGLLVGISSGAA AAA+++AK AGK IV + P GERY
Sbjct: 239 VIRVSDEEAIATARRLAREEGLLVGISSGAALAAALKLAKELP-AGKTIVTILPDSGERY 297
Query: 306 LS 307
LS
Sbjct: 298 LS 299
|
Length = 300 |
| >gnl|CDD|182672 PRK10717, PRK10717, cysteine synthase A; Provisional | Back alignment and domain information |
|---|
Score = 344 bits (886), Expect = e-119
Identities = 139/320 (43%), Positives = 194/320 (60%), Gaps = 19/320 (5%)
Query: 8 IAKDVTELIGKTPLVYLNRIVD--GCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGL 65
I +DV++ IG TPL+ LNR + GC I K E + P SVKDR ++I DAE++GL
Sbjct: 3 IFEDVSDTIGNTPLIRLNRASEATGC--EILGKAEFLNPGGSVKDRAALNIIWDAEKRGL 60
Query: 66 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT--- 122
++PG ++E T+GNTGIGLA +AAA+GY+ +I MP + S E++ +L A GAELVL
Sbjct: 61 LKPG-GTIVEGTAGNTGIGLALVAAARGYKTVIVMPETQSQEKKDLLRALGAELVLVPAA 119
Query: 123 ---DPARGMKGAVQKAEEIRDKTPNSYV-LQQFENPANPKIHYETTGPEIWKGTGGKIDA 178
+P +KGA + AEE+ PN + QF+NPAN + HYETTGPEIW+ T GK+D
Sbjct: 120 PYANPNNYVKGAGRLAEELVASEPNGAIWANQFDNPANREAHYETTGPEIWEQTDGKVDG 179
Query: 179 LVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESA----VLSG--GKPGPHKIQGIGAG 232
V +GTGGT+ G +YLKE NP++K+ +P SA +G G +GIG G
Sbjct: 180 FVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTGSALYSYYKTGELKAEGSSITEGIGQG 239
Query: 233 FIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGK 292
I L+ +D+ ++I EEA+ TA L +EGL +G SSG AAA+++A+ G
Sbjct: 240 RITANLEGAPIDDAIRIPDEEALSTAYRLLEEEGLCLGGSSGINVAAALRLARE-LGPGH 298
Query: 293 LIVVVFPSFGERYLSSVLFE 312
IV + GERY S +
Sbjct: 299 TIVTILCDSGERYQSKLFNP 318
|
Length = 330 |
| >gnl|CDD|236972 PRK11761, cysM, cysteine synthase B; Provisional | Back alignment and domain information |
|---|
Score = 312 bits (801), Expect = e-106
Identities = 135/303 (44%), Positives = 186/303 (61%), Gaps = 17/303 (5%)
Query: 14 ELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVL 73
+ IG TPLV L R+ I AKLE P SVKDR SMI AE++G I+PG+ L
Sbjct: 8 DTIGNTPLVKLQRLPPDRGNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPGD-TL 66
Query: 74 IEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQ 133
IE TSGNTGI LA +AA KGYR+ + MP +MS ERR + A+GAEL+L +GM+GA
Sbjct: 67 IEATSGNTGIALAMIAAIKGYRMKLIMPENMSQERRAAMRAYGAELILVPKEQGMEGARD 126
Query: 134 KAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAG 193
A +++ + VL QF NP NP HYETTGPEIW+ T G+I VS +GT GT+ G
Sbjct: 127 LALQMQAEG-EGKVLDQFANPDNPLAHYETTGPEIWRQTEGRITHFVSSMGTTGTIMGVS 185
Query: 194 KYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGI---GAGFIPGVLDVNLLDETVQIS 250
+YLKE NP +++ G++P E + I GI ++P + D + +D + +S
Sbjct: 186 RYLKEQNPAVQIVGLQPEEGS----------SIPGIRRWPEEYLPKIFDASRVDRVLDVS 235
Query: 251 SEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVL 310
+EA T + LA +EG+ G+SSG A AAA++IA+ NA +IV + G+RYLS+ +
Sbjct: 236 QQEAENTMRRLAREEGIFCGVSSGGAVAAALRIARENPNA--VIVAIICDRGDRYLSTGV 293
Query: 311 FES 313
F +
Sbjct: 294 FPA 296
|
Length = 296 |
| >gnl|CDD|130208 TIGR01138, cysM, cysteine synthase B | Back alignment and domain information |
|---|
Score = 283 bits (726), Expect = 3e-95
Identities = 127/300 (42%), Positives = 187/300 (62%), Gaps = 11/300 (3%)
Query: 12 VTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGES 71
+ + +G TPLV L R+ + + KLE P SVKDR SMI +AE++G I+PG+
Sbjct: 2 IEQTVGNTPLVRLQRMGPENGSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPGD- 60
Query: 72 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGA 131
VLIE TSGNTGI LA +AA KGYR+ + MP +MS ER+ + A+GAEL+L GM+GA
Sbjct: 61 VLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERKAAMRAYGAELILVTKEEGMEGA 120
Query: 132 VQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTG 191
A E+ ++ L QF NP NP HY +TGPEIW+ TGG+I VS +GT GT+ G
Sbjct: 121 RDLALELANRGEGKL-LDQFNNPDNPYAHYTSTGPEIWQQTGGRITHFVSSMGTTGTIMG 179
Query: 192 AGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISS 251
++LKE NP +++ G++P E + + G I+ ++PG+ D +L+D + I
Sbjct: 180 VSRFLKEQNPPVQIVGLQPEEGSSIPG-------IRRWPTEYLPGIFDASLVDRVLDIHQ 232
Query: 252 EEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLF 311
+A T + LA++EG+ G+SSG A AAA+++A+ E ++V + G+RYLS+ +F
Sbjct: 233 RDAENTMRELAVREGIFCGVSSGGAVAAALRLAR--ELPDAVVVAIICDRGDRYLSTGVF 290
|
CysM differs from CysK in that it can also use thiosulfate instead of sulfide, to produce cysteine thiosulfonate instead of cysteine. Alternate name: O-acetylserine (thiol)-lyase [Amino acid biosynthesis, Serine family]. Length = 290 |
| >gnl|CDD|233287 TIGR01137, cysta_beta, cystathionine beta-synthase | Back alignment and domain information |
|---|
Score = 289 bits (740), Expect = 5e-95
Identities = 134/312 (42%), Positives = 193/312 (61%), Gaps = 11/312 (3%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
I ++ +LIG TPLV LN++ G + AK E P SVKDRI MI DAE G ++
Sbjct: 1 IRDNIIDLIGNTPLVRLNKVSKGIKCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLK 60
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
PG +IEPTSGNTGIGLA +AA KGY+ II +P MS E+ VL A GAE+V T A
Sbjct: 61 PG-DTIIEPTSGNTGIGLALVAAIKGYKCIIVLPEKMSNEKVDVLKALGAEIVRTPTAAA 119
Query: 128 M---KGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIG 184
+ + A+ + + P +++L Q+ NP+NP HY+ TGPEI + GK+D V+G G
Sbjct: 120 FDSPESHIGVAKRLVREIPGAHILDQYNNPSNPLAHYDGTGPEILEQCEGKLDMFVAGAG 179
Query: 185 TGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKP------GPHKIQGIGAGFIPGVL 238
TGGT+TG +YLKE NP+ ++ G +P E ++L+ + P+K++GIG FIP VL
Sbjct: 180 TGGTITGIARYLKESNPKCRIVGADP-EGSILAQPENLNKTGRTPYKVEGIGYDFIPTVL 238
Query: 239 DVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVF 298
D ++DE ++ +E+ + A+ L +EGLLVG SSG+A AA++ A+ ++IVV+
Sbjct: 239 DRKVVDEWIKTDDKESFKMARRLIKEEGLLVGGSSGSAVVAALKAAEDELTEDQVIVVLL 298
Query: 299 PSFGERYLSSVL 310
P Y++ L
Sbjct: 299 PDSIRNYMTKFL 310
|
Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven [Amino acid biosynthesis, Serine family]. Length = 454 |
| >gnl|CDD|234409 TIGR03945, PLP_SbnA_fam, 2,3-diaminopropionate biosynthesis protein SbnA | Back alignment and domain information |
|---|
Score = 242 bits (619), Expect = 8e-79
Identities = 111/302 (36%), Positives = 163/302 (53%), Gaps = 8/302 (2%)
Query: 12 VTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGES 71
+ LIG TPLV L R+ R+ AKLE P S+KDR ++ A ++G I PG +
Sbjct: 1 ILSLIGNTPLVKLERLFPDAPFRLFAKLEGFNPGGSIKDRPALYILEAAIKRGRITPG-T 59
Query: 72 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT---DPARGM 128
+IE +SGN GI LA + A KG R I + ++S + +L A+GAE+ D G
Sbjct: 60 TIIESSSGNLGIALAMICAYKGLRFICVVDPNISPQNLKLLRAYGAEVEKVTEPDETGGY 119
Query: 129 KGA-VQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGG 187
G + + E+ P++Y Q+ NP NP+ HY TG EI + +D L G+ T G
Sbjct: 120 LGTRIARVRELLASIPDAYWPNQYANPDNPRAHYHGTGREIAR-AFPPLDYLFVGVSTTG 178
Query: 188 TVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETV 247
T+ G + L+E P K+ V+ V S V+ GG PG I G+GA +P +LD +L+D+ V
Sbjct: 179 TLMGCSRRLRERGPNTKVIAVDAVGS-VIFGGPPGRRHIPGLGASVVPELLDESLIDDVV 237
Query: 248 QISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLS 307
+ + + + LA +EG+L G SSG AA ++ R G +V + P GERYL
Sbjct: 238 HVPEYDTVAGCRRLARREGILAGGSSGTVVAAIKRLLPRIP-PGSTVVAILPDRGERYLD 296
Query: 308 SV 309
+V
Sbjct: 297 TV 298
|
Members of this family include SbnA, a protein of the staphyloferrin B biosynthesis operon of Staphylococcus aureus. SbnA and SbnB together appear to synthesize 2,3-diaminopropionate, a precursor of certain siderophores and other secondary metabolites. SbnA is a pyridoxal phosphate-dependent enzyme [Cellular processes, Biosynthesis of natural products]. Length = 304 |
| >gnl|CDD|107202 cd00640, Trp-synth-beta_II, Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions | Back alignment and domain information |
|---|
Score = 236 bits (605), Expect = 2e-77
Identities = 108/282 (38%), Positives = 145/282 (51%), Gaps = 41/282 (14%)
Query: 19 TPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTS 78
TPLV L R+ A I KLE + P S KDR ++I AEE+G + G V+IE T
Sbjct: 1 TPLVRLKRLSKLGGANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKLPKG--VIIESTG 58
Query: 79 GNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEI 138
GNTGI LA AA G + I MP S E+ + A GAE+VL A+ A+E+
Sbjct: 59 GNTGIALAAAAARLGLKCTIVMPEGASPEKVAQMRALGAEVVLVPG--DFDDAIALAKEL 116
Query: 139 RDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGG-KIDALVSGIGTGGTVTGAGKYLK 197
++ P +Y + QF+NPAN T G EI + GG K DA+V +G GG + G + LK
Sbjct: 117 AEEDPGAYYVNQFDNPANIAGQG-TIGLEILEQLGGQKPDAVVVPVGGGGNIAGIARALK 175
Query: 198 EHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIET 257
E P +K+ GVEP E V +S EEA+E
Sbjct: 176 ELLPNVKVIGVEP----------------------------------EVVTVSDEEALEA 201
Query: 258 AKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFP 299
+LLA +EG+LV SS AA AAA+++AK+ GK +VV+
Sbjct: 202 IRLLAREEGILVEPSSAAALAAALKLAKKL-GKGKTVVVILT 242
|
This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehyd catalyzes the conversion of L- or D-serine to pyruvate and ammonia. Thr-dehyd is active as a homodimer and catalyzes the conversion of L-threonine to 2-oxobutanoate and ammonia. DAL is also a homodimer and catalyzes the alpha, beta-elimination reaction of both L- and D-alpha, beta-diaminopropionate to form pyruvate and ammonia. Thr-synth catalyzes the formation of threonine and inorganic phosphate from O-phosphohomoserine. Length = 244 |
| >gnl|CDD|215840 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme | Back alignment and domain information |
|---|
Score = 214 bits (547), Expect = 4e-68
Identities = 106/303 (34%), Positives = 153/303 (50%), Gaps = 24/303 (7%)
Query: 12 VTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGES 71
++ IG TPLV L + G R+ KLE + P S KDR ++ A E+G +
Sbjct: 1 ISLGIGPTPLVRLPSPLLGA--RVYLKLESLNPTGSFKDRGAAYLLLRALERG------A 52
Query: 72 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL---TDPARGM 128
++E +SGNTG LA AA G ++ I +P S + +++ A GAE++L
Sbjct: 53 TVVEASSGNTGRALAAAAARLGLKVTIVVPEGASPGKLLLMRALGAEVILVVSEGDYDDA 112
Query: 129 KGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTG-GKIDALVSGIGTGG 187
++A E+ L Q+ NP N Y+T G EI + G G DA+V +G GG
Sbjct: 113 LELAEEAAELLAAYDGPIPLGQYNNP-NVIAGYKTIGLEILEQLGQGDPDAVVVPVGGGG 171
Query: 188 TVTGAGKYLKEHNPEIKLYGVEPVESAVLSGG------KPGPHKIQGIGAGFI-PGVLDV 240
G + LKE P I++ GVEP + L+ P P I G+G G G L +
Sbjct: 172 LAAGIARGLKELGPGIRVIGVEPEGAPALARSLEAGRRVPKPTTIAGLGPGIPLDGELAL 231
Query: 241 NLLDET----VQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVV 296
L+DE +S EEA+E +LLA +EG+LV SS AA AAA+++A+ GK +VV
Sbjct: 232 ELIDEYVGDVYAVSDEEALEAIRLLARREGILVEPSSAAALAAALRLAELELGKGKRVVV 291
Query: 297 VFP 299
V
Sbjct: 292 VLT 294
|
Members of this family are all pyridoxal-phosphate dependent enzymes. This family includes: serine dehydratase EC:4.2.1.13 P20132, threonine dehydratase EC:4.2.1.16, tryptophan synthase beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine synthase EC:4.2.99.8 P11096, cystathionine beta-synthase EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase EC:4.1.99.4. Length = 295 |
| >gnl|CDD|215204 PLN02356, PLN02356, phosphateglycerate kinase | Back alignment and domain information |
|---|
Score = 136 bits (343), Expect = 9e-37
Identities = 103/352 (29%), Positives = 161/352 (45%), Gaps = 60/352 (17%)
Query: 14 ELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVL 73
+ IG TPL+ +N + + I K E + P SVKDR+ +I +A E G + PG V+
Sbjct: 49 DAIGNTPLIRINSLSEATGCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFPG-GVV 107
Query: 74 IEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP--------- 124
E ++G+T I LA +A A G + + +P +++E+ +L A GA + P
Sbjct: 108 TEGSAGSTAISLATVAPAYGCKCHVVIPDDVAIEKSQILEALGATVERVRPVSITHKDHY 167
Query: 125 ---AR-----------------GMKGAVQK------AEEIR------DKTPNSYVLQQFE 152
AR G + +EE + + QFE
Sbjct: 168 VNIARRRALEANELASKRRKGSETDGIHLEKTNGCISEEEKENSLFSSSCTGGFFADQFE 227
Query: 153 NPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVE 212
N AN + HYE TGPEIW+ T G +DA V+ GTGGT+ G ++L+E NP IK + ++P
Sbjct: 228 NLANFRAHYEGTGPEIWEQTQGNLDAFVAAAGTGGTLAGVSRFLQEKNPNIKCFLIDPPG 287
Query: 213 SAVLSG-------------GK----PGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAI 255
S + + G+ P +GIG + + LD + + +EA+
Sbjct: 288 SGLFNKVTRGVMYTREEAEGRRLKNPFDTITEGIGINRLTQNFLMAKLDGAFRGTDKEAV 347
Query: 256 ETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLS 307
E ++ L +GL VG SS A+++A+ G IV + G R+LS
Sbjct: 348 EMSRYLLKNDGLFVGSSSAMNCVGAVRVAQSL-GPGHTIVTILCDSGMRHLS 398
|
Length = 423 |
| >gnl|CDD|224092 COG1171, IlvA, Threonine dehydratase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 6e-21
Identities = 67/297 (22%), Positives = 119/297 (40%), Gaps = 28/297 (9%)
Query: 18 KTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPT 77
TPL + + A I K E ++P S K R Y+ ++ E+ G +I +
Sbjct: 25 PTPLQRSPSLSERLGAEIYLKRENLQPVGSFKIRGAYNKLSSLSEEEERAAG---VIAAS 81
Query: 78 SGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEE 137
+GN G+A+ A G + I MP + + +GAE++L A AEE
Sbjct: 82 AGNHAQGVAYAAKRLGIKATIVMPETTPKIKVDATRGYGAEVILHG--DNFDDAYAAAEE 139
Query: 138 IRDKTPNSYVLQQFENPANPKIH----YETTGPEIWKGTGGKIDALVSGIGTGGTVTGAG 193
+ ++ + F++P T EI + DA+ +G GG ++G
Sbjct: 140 LAEEE-GLTFVPPFDDP-----DVIAGQGTIALEILEQLPDLPDAVFVPVGGGGLISGIA 193
Query: 194 KYLKEHNPEIKLYGVEPVESAVL-----SGGKP----GPHKI-QGIG---AGFIPGVLDV 240
LK +PEIK+ GVEP + + +G I G+ G + +
Sbjct: 194 TALKALSPEIKVIGVEPEGAPSMYASLKAGKIVVVLPDVGTIADGLAVKRPGDLTFEILR 253
Query: 241 NLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVV 297
L+D+ V + +E + L + ++ + A AA + P ++V++
Sbjct: 254 ELVDDIVLVDEDEICAAMRDLFERTKIIAEPAGALALAALLAGKIEPLQGKTVVVIL 310
|
Length = 347 |
| >gnl|CDD|107205 cd01562, Thr-dehyd, Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen | Back alignment and domain information |
|---|
Score = 86.8 bits (216), Expect = 2e-19
Identities = 71/302 (23%), Positives = 124/302 (41%), Gaps = 43/302 (14%)
Query: 18 KTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPT 77
+TPL+ + + A + K E ++ S K R Y+ + E+ + ++ +
Sbjct: 17 RTPLLTSPTLSELLGAEVYLKCENLQKTGSFKIRGAYNKLLSLSEEERAKG----VVAAS 72
Query: 78 SGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEE 137
+GN G+A+ A G I MP + + A+GAE+VL A KA E
Sbjct: 73 AGNHAQGVAYAAKLLGIPATIVMPETAPAAKVDATRAYGAEVVLYG--EDFDEAEAKARE 130
Query: 138 IRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTG----------GKIDALVSGIGTGG 187
+ ++ +++ +P + P++ G G +DA+ +G GG
Sbjct: 131 LAEEEGLTFI-----HPFD--------DPDVIAGQGTIGLEILEQVPDLDAVFVPVGGGG 177
Query: 188 TVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKPGPHKIQGI----GAGFIPGVL- 238
+ G +K +P K+ GVEP + ++ GKP A PG L
Sbjct: 178 LIAGIATAVKALSPNTKVIGVEPEGAPAMAQSLAAGKPVTLPEVDTIADGLAVKRPGELT 237
Query: 239 -DVN--LLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 295
++ L+D+ V +S +E LL +E L+ + A AA + + GK +V
Sbjct: 238 FEIIRKLVDDVVTVSEDEIAAAMLLLFEREKLVAEPAGALALAALLSGKLDLK--GKKVV 295
Query: 296 VV 297
VV
Sbjct: 296 VV 297
|
Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions. Length = 304 |
| >gnl|CDD|130197 TIGR01127, ilvA_1Cterm, threonine ammonia-lyase, medium form | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 6e-16
Identities = 77/294 (26%), Positives = 128/294 (43%), Gaps = 28/294 (9%)
Query: 19 TPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTS 78
TPL+Y + D + + KLE ++ S K R + IA+ E R ++ ++
Sbjct: 1 TPLIYSTTLSDITGSEVYLKLENLQKTGSFKIRGALNKIANLSEDQRQRG----VVAASA 56
Query: 79 GNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEI 138
GN G+A+ A G + +I MP S + ++GAE++L A A +
Sbjct: 57 GNHAQGVAYAAKKFGIKAVIVMPESAPPSKVKATKSYGAEVILH--GDDYDEAYAFATSL 114
Query: 139 RDKTPNSYVLQQFENP---ANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKY 195
++ +V F++ A T G EI + +D ++ +G GG ++G
Sbjct: 115 AEEEGRVFV-HPFDDEFVMAGQG----TIGLEIME-DIPDVDTVIVPVGGGGLISGVASA 168
Query: 196 LKEHNPEIKLYGVE----PVESAVLSGGKPGPHK-IQGIGAGFI---PGVLDVNLL---- 243
K+ NP +K+ GVE P L GK + ++ I G PG L N++
Sbjct: 169 AKQINPNVKVIGVEAEGAPSMYESLREGKIKAVESVRTIADGIAVKKPGDLTFNIIKEYV 228
Query: 244 DETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVV 297
D+ V + EE I A L L+ ++ +GAA AA+ K K+ VV+
Sbjct: 229 DDVVTVDEEE-IANAIYLLLERHKILAEGAGAAGVAALLEQKVDVKGKKIAVVL 281
|
A form of threonine dehydratase with two copies of the C-terminal domain pfam00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes [Amino acid biosynthesis, Pyruvate family]. Length = 380 |
| >gnl|CDD|107206 cd01563, Thr-synth_1, Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 2e-13
Identities = 82/313 (26%), Positives = 127/313 (40%), Gaps = 48/313 (15%)
Query: 17 GKTPLVYLNRIVD-GCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIE 75
G TPLV R+ + + K E + P S KDR ++ A+E G +
Sbjct: 21 GNTPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGMTVAVSKAKELG-----VKAVAC 75
Query: 76 PTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG--MKGAVQ 133
++GNT LA AA G + ++ +PA +L + LA+GA ++ + ++ +
Sbjct: 76 ASTGNTSASLAAYAARAGIKCVVFLPAGKALGKLAQALAYGATVLAVEGNFDDALRLVRE 135
Query: 134 KAEEIRDKTPNSYVLQQFENPANPKIH-YETTGPEIWKGTGGKI-DALVSGIGTGGTVTG 191
AEE N L NP ++ +T EI + G ++ D +V +G GG +T
Sbjct: 136 LAEE------NWIYLSNSLNPY--RLEGQKTIAFEIAEQLGWEVPDYVVVPVGNGGNITA 187
Query: 192 AGKYLKE--------HNPEIKLYGV-----EPVESAVLSGGK-----PGPHKI-QGIGAG 232
K KE P ++ GV P+ A G P I I G
Sbjct: 188 IWKGFKELKELGLIDRLP--RMVGVQAEGAAPIVRAFKEGKDDIEPVENPETIATAIRIG 245
Query: 233 F---IPGVLDVNLLDET----VQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAK 285
P L + E+ V +S EE +E KLLA EG+ V +S A+ A ++ +
Sbjct: 246 NPASGPKALRA--VRESGGTAVAVSDEEILEAQKLLARTEGIFVEPASAASLAGLKKLRE 303
Query: 286 RPENAGKLIVVVF 298
VVV
Sbjct: 304 EGIIDKGERVVVV 316
|
It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants. Length = 324 |
| >gnl|CDD|130194 TIGR01124, ilvA_2Cterm, threonine ammonia-lyase, biosynthetic, long form | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 2e-11
Identities = 55/188 (29%), Positives = 86/188 (45%), Gaps = 18/188 (9%)
Query: 34 RIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKG 93
RI K E ++P S K R Y+ +A + R +I ++GN G+AF AA G
Sbjct: 33 RILIKREDLQPVFSFKLRGAYNKMAQLSPEQKARG----VIAASAGNHAQGVAFSAARLG 88
Query: 94 YRLIITMPASMSLERRMVLLAFGAELVLTDPARG--MKGAVQKAEEIRDKTPNSYVLQQF 151
+ +I MP + + + FG E+VL G A KA E+ + +++ F
Sbjct: 89 LKALIVMPETTPDIKVDAVRGFGGEVVL----HGANFDDAKAKAIELSQEKGLTFI-HPF 143
Query: 152 ENP---ANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGV 208
++P A T EI + +DA+ +G GG G +K+ PEIK+ GV
Sbjct: 144 DDPLVIAGQG----TLALEILRQVANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGV 199
Query: 209 EPVESAVL 216
EP +S +
Sbjct: 200 EPTDSDCM 207
|
This model describes a form of threonine ammonia-lyase, a pyridoxal-phosphate dependent enzyme, with two copies of the threonine dehydratase C-terminal domain (pfam00585). Members with known function participate in isoleucine biosynthesis and are inhibited by isoleucine. Alternate name: threonine deaminase, threonine dehydratase. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain [Amino acid biosynthesis, Pyruvate family]. Length = 499 |
| >gnl|CDD|180709 PRK06815, PRK06815, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 2e-11
Identities = 78/304 (25%), Positives = 127/304 (41%), Gaps = 48/304 (15%)
Query: 19 TPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESV---LIE 75
TPL + + + K E ++ S K R A K + +I
Sbjct: 21 TPLEHSPLLSQHTGCEVYLKCEHLQHTGSFKFR-------GASNKLRLLNEAQRQQGVIT 73
Query: 76 PTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL-VLTDPARGMKGAVQK 134
+SGN G G+A A G + + P S + + A GAE+ + A + A ++
Sbjct: 74 ASSGNHGQGVALAAKLAGIPVTVYAPEQASAIKLDAIRALGAEVRLYGGDALNAELAARR 133
Query: 135 AEEIRDKTPNSYVLQQFENPAN-PKI--HYETTGPEIWKGTGGKIDALVSGIGTGGTVTG 191
A E + K + +P N P++ T G E+ + +DA+ +G GG ++G
Sbjct: 134 AAEQQGKV--------YISPYNDPQVIAGQGTIGMELVE-QQPDLDAVFVAVGGGGLISG 184
Query: 192 AGKYLKEHNPEIKLYGVEPVESAV------------------LSGGKPGPHKIQGIGAGF 233
YLK +P+ ++ G P S LS G G G+ G
Sbjct: 185 IATYLKTLSPKTEIIGCWPANSPSLYTSLEAGEIVEVAEQPTLSDGTAG-----GVEPGA 239
Query: 234 IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKL 293
I L L+D+ V +S EE E +L+A + L+ ++G A AAA+++A R + GK
Sbjct: 240 ITFPLCQQLIDQKVLVSEEEIKEAMRLIAETDRWLIEGAAGVALAAALKLAPRYQ--GKK 297
Query: 294 IVVV 297
+ VV
Sbjct: 298 VAVV 301
|
Length = 317 |
| >gnl|CDD|237111 PRK12483, PRK12483, threonine dehydratase; Reviewed | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 3e-10
Identities = 57/216 (26%), Positives = 101/216 (46%), Gaps = 16/216 (7%)
Query: 5 KSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIA----DA 60
+ ++A V ++ +TPL + ++ K E ++P S K R Y+ +A +
Sbjct: 24 RKILAARVYDVARETPLQRAPNLSARLGNQVLLKREDLQPVFSFKIRGAYNKMARLPAEQ 83
Query: 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120
+G+I ++GN G+A AA G + +I MP + + + A G E+V
Sbjct: 84 LARGVI--------TASAGNHAQGVALAAARLGVKAVIVMPRTTPQLKVDGVRAHGGEVV 135
Query: 121 LTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALV 180
L + A+ A ++ ++ ++V F++P + T EI + G +DA+
Sbjct: 136 LHGES--FPDALAHALKLAEEEGLTFV-PPFDDP-DVIAGQGTVAMEILRQHPGPLDAIF 191
Query: 181 SGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVL 216
+G GG + G Y+K PEIK+ GVEP +S L
Sbjct: 192 VPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDDSNCL 227
|
Length = 521 |
| >gnl|CDD|180550 PRK06382, PRK06382, threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 8e-09
Identities = 76/298 (25%), Positives = 127/298 (42%), Gaps = 30/298 (10%)
Query: 16 IGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDR---IGYSMIADAEEKGLIRPGESV 72
+ +TPL++ D I KLE + S K R +S +++ E + +
Sbjct: 23 LNRTPLIHSTTFGDEYGGDIYFKLENFQKTGSFKSRGAVFKFSKLSEDELRNGV------ 76
Query: 73 LIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAV 132
I ++GN G+A+ A+ G I MP ++ + A+GA ++LT R A
Sbjct: 77 -ITASAGNHAQGVAYAASINGIDAKIVMPEYTIPQKVNAVEAYGAHVILT--GRDYDEAH 133
Query: 133 QKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGA 192
+ A++I N ++ F + T G EI + +D ++ +G GG ++G
Sbjct: 134 RYADKIA-MDENRTFIEAFNDRWVISGQ-GTIGLEIMEDLP-DLDQIIVPVGGGGLISGI 190
Query: 193 GKYLKEHNPEIKLYGVEPVES----AVLSGGKPGPHK-----IQGIGAGFIPGVLDVNL- 242
K NP +K+ G+E S A L GK H GI + PG L ++
Sbjct: 191 ALAAKHINPNVKIIGIESELSDSMKASLREGKIVAHTSGVSICDGISVKY-PGDLTFDIA 249
Query: 243 ---LDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVV 297
+D+ V + +EE++ A + +V SGA AAI K K+ +VV
Sbjct: 250 KNYVDDIVTV-TEESVSKAIYKLFEREKIVAEPSGAVGLAAIMEGKVDVKGKKVAIVV 306
|
Length = 406 |
| >gnl|CDD|178165 PLN02550, PLN02550, threonine dehydratase | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 1e-08
Identities = 50/212 (23%), Positives = 97/212 (45%), Gaps = 8/212 (3%)
Query: 6 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGL 65
++++ V ++ ++PL ++ + ++ K E ++P S K R Y+M+A ++ L
Sbjct: 97 NILSAKVYDVAIESPLQLAKKLSERLGVKVLLKREDLQPVFSFKLRGAYNMMAKLPKEQL 156
Query: 66 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 125
+ +I ++GN G+A A G +I MP + + + GA +VL +
Sbjct: 157 ----DKGVICSSAGNHAQGVALSAQRLGCDAVIAMPVTTPEIKWQSVERLGATVVLVGDS 212
Query: 126 RGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGT 185
Q + R + F++P + T G EI + G + A+ +G
Sbjct: 213 YD---EAQAYAKQRALEEGRTFIPPFDHP-DVIAGQGTVGMEIVRQHQGPLHAIFVPVGG 268
Query: 186 GGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS 217
GG + G Y+K PE+K+ GVEP ++ ++
Sbjct: 269 GGLIAGIAAYVKRVRPEVKIIGVEPSDANAMA 300
|
Length = 591 |
| >gnl|CDD|181457 PRK08526, PRK08526, threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 5e-08
Identities = 85/327 (25%), Positives = 135/327 (41%), Gaps = 56/327 (17%)
Query: 1 MVEEKSVI-AKD-VTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIA 58
M+E + AK ++ + KTP Y + A + K E ++ + K R Y+ IA
Sbjct: 1 MLELNKIYQAKQRISGFVNKTPFAYAPFLSKISGAEVYLKKENLQITGAYKIRGAYNKIA 60
Query: 59 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118
+ E+ + +I ++GN G+A A G + +I MP + L + A GAE
Sbjct: 61 NLSEEQ----KQHGVIAASAGNHAQGVAISAKKFGIKAVIVMPEATPLLKVSGTKALGAE 116
Query: 119 LVLT----DPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTG- 173
++L D A A++ A+E + T F +P + E+ G G
Sbjct: 117 VILKGDNYDEAYAF--ALEYAKE-NNLT--------FIHPFEDE--------EVMAGQGT 157
Query: 174 ---------GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGV----EPVESAVLSGGK 220
+D +V +G GG ++G K+ NP IK+ GV P K
Sbjct: 158 IALEMLDEISDLDMVVVPVGGGGLISGIASAAKQINPNIKIIGVGAKGAPAMYESFHAKK 217
Query: 221 PGPHK-IQGIGAGFIPGVLDVN---------LLDETVQISSEEAIETAKLLALKEGLLVG 270
K ++ I G V D + +D+ VQ+ EE I A L L++ +V
Sbjct: 218 IINSKSVRTIADGI--AVRDASPINLAIILECVDDFVQVDDEE-IANAILFLLEKQKIVV 274
Query: 271 ISSGAATAAAIQIAKRPENAGKLIVVV 297
+GAA+ AA+ K GK I VV
Sbjct: 275 EGAGAASVAALLHQKIDLKKGKKIGVV 301
|
Length = 403 |
| >gnl|CDD|223572 COG0498, ThrC, Threonine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 9e-08
Identities = 73/323 (22%), Positives = 117/323 (36%), Gaps = 72/323 (22%)
Query: 17 GKTPLVYLNRIVDG---CVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVL 73
G TPL + + K P S KDR +++ A+E G +
Sbjct: 75 GGTPLYKAPALAAPLGVLNDNLYVKELGHNPTGSFKDRGMTVLVSLAKELGAK-----TI 129
Query: 74 IEPTSGNTGIGLAFMAAAKGYRLIITMPAS-MSLERRMVLLAFGAELVLTDPARGMKGAV 132
+ +SGNTG A AA G ++ + P +S + +L GA ++ G
Sbjct: 130 LCASSGNTGASAAAYAARAGLKVFVLYPKGKVSPGKLAQMLTLGAHVI---AVDGNFDDA 186
Query: 133 QK-AEEIRDKTPNSYVLQQFENPANP------KIHYETTGPEIWKGTGGKI-DALVSGIG 184
Q+ +E ++ + N NP K + EI + G K D +V +G
Sbjct: 187 QELVKEAANREGLLSAV----NSINPYRLEGQKTYAF----EIAEQLGWKAPDHVVVPVG 238
Query: 185 TGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLD 244
GG + K KE P I P + V + GF PGV
Sbjct: 239 NGGNLLAIYKGFKEGLP-IGKIDKAPNMNGVQA-------------EGFSPGVYAWKEGR 284
Query: 245 ETVQISS------------------------------EEAIETAKLLALKEGLLVGISSG 274
ET + + EE +E KLLA +EG+L+ S
Sbjct: 285 ETPETIAPAMDIGNPSNWERALFALRESGGLAVAVSDEEILEAIKLLAEREGILIEPHSA 344
Query: 275 AATAAAIQIAKRPENAGKLIVVV 297
A AA +++ ++ + + +V+V
Sbjct: 345 VAVAALLKLREKIIDPDETVVLV 367
|
Length = 411 |
| >gnl|CDD|235842 PRK06608, PRK06608, threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 4e-07
Identities = 49/204 (24%), Positives = 97/204 (47%), Gaps = 21/204 (10%)
Query: 16 IGKTPLVY---LNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESV 72
+ TP+V+ LN ++ I K+E ++ + K R + + + +E+G + + +
Sbjct: 21 LHLTPIVHSESLNEMLG---HEIFFKVESLQKTGAFKVRGVLNHLLELKEQG--KLPDKI 75
Query: 73 LIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAV 132
+ ++GN G +A+ + G + I +P + S ++ L +G E++LT R + A
Sbjct: 76 -VAYSTGNHGQAVAYASKLFGIKTRIYLPLNTSKVKQQAALYYGGEVILT-NTR--QEAE 131
Query: 133 QKAEEIRDKTPNSYVLQQFENPANPKIHYE-TTGPEIWKGTGGKIDALVSGIGTGGTVTG 191
+KA+E D+ Y + ++ + I T E + G DA+ + G GG ++G
Sbjct: 132 EKAKE--DEEQGFYYIHPSDSDS--TIAGAGTLCYEALQQLGFSPDAIFASCGGGGLISG 187
Query: 192 AGKYLKEH--NPEIKLYGVEPVES 213
YL + +P L G EP+ +
Sbjct: 188 T--YLAKELISPTSLLIGSEPLNA 209
|
Length = 338 |
| >gnl|CDD|136018 PRK06721, PRK06721, threonine synthase; Reviewed | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 2e-06
Identities = 74/288 (25%), Positives = 116/288 (40%), Gaps = 28/288 (9%)
Query: 11 DVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGE 70
DV+ + G TPL+ L I ++ K E P S KDR +A A+E+ G
Sbjct: 21 DVSLMEGNTPLIPLLNISKQLGIQLYGKYEGANPTGSFKDRGMVMAVAKAKEE-----GS 75
Query: 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMV-LLAFGAELVLTDPARGMK 129
+I ++GNT A AA G + II +P ++ +A+GAE++ +
Sbjct: 76 EAIICASTGNTSASAAAYAARLGMKCIIVIPEGKIAHGKLAQAVAYGAEIISIEG--NFD 133
Query: 130 GAVQKAEEIRDKTPNSYVLQQFENPANP-KIHYETTGP-EIWKGTGGKIDALVSGIGTGG 187
A++ I + P + V N NP +I + T EI D L +G G
Sbjct: 134 DALKAVRNIAAEEPITLV-----NSVNPYRIEGQKTAAFEICDQLQRAPDVLAIPVGNAG 188
Query: 188 TVTGAGKYLKEHNPEI-----KLYGVEPVESAVLSGGK--PGPHKIQ-----GIGAGFIP 235
+T K E+ E +++G E +A + G P I G A +
Sbjct: 189 NITAYWKGFCEYEKEKGYKKPRIHGFEAEGAAAIVKGHVIDEPETIATAIRIGNPASWSY 248
Query: 236 GVLDVNLLD-ETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQ 282
V E +S EE + +LLA EG+ S A+ A ++
Sbjct: 249 AVEAAEQSHGEIDMVSDEEILHAYRLLAKSEGVFAEPGSNASLAGVMK 296
|
Length = 352 |
| >gnl|CDD|233712 TIGR02079, THD1, threonine dehydratase | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 3e-06
Identities = 53/207 (25%), Positives = 88/207 (42%), Gaps = 15/207 (7%)
Query: 9 AKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRP 68
K + E++ TPL R+ + A I K E ++P S K R Y+ + + L
Sbjct: 7 RKRLKEVVPHTPLQLNERLSEKYGANIYLKREDLQPVRSYKIRGAYNFLKQLSDAQL--- 63
Query: 69 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE---LVLT-DP 124
++ ++GN G A+ G + MPA+ ++ + FG E ++L D
Sbjct: 64 -AKGVVCASAGNHAQGFAYACRHLGVHGTVFMPATTPKQKIDRVKIFGGEFIEIILVGDT 122
Query: 125 ARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYE-TTGPEIWKGTGGKIDALVSGI 183
A ++ E T + F++P I + T EI K D +V +
Sbjct: 123 FDQCAAAAREHVEDHGGT----FIPPFDDPR--IIEGQGTVAAEILDQLPEKPDYVVVPV 176
Query: 184 GTGGTVTGAGKYLKEHNPEIKLYGVEP 210
G GG ++G YL +P+ K+ GVEP
Sbjct: 177 GGGGLISGLTTYLAGTSPKTKIIGVEP 203
|
This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been charcterized (TIGR01124 and TIGR01127). Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway [Amino acid biosynthesis, Pyruvate family]. Length = 409 |
| >gnl|CDD|235789 PRK06381, PRK06381, threonine synthase; Validated | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 4e-06
Identities = 54/198 (27%), Positives = 78/198 (39%), Gaps = 23/198 (11%)
Query: 1 MVEEKSVIAKDVTELIGKTPLV---YLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMI 57
M EE S + G TPL+ L + + +I K E P + KDRI + +
Sbjct: 1 MEEELS---SSEEKPPGGTPLLRARKLEEELG--LRKIYLKFEGANPTGTQKDRIAEAHV 55
Query: 58 ADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGA 117
A +R G S + T GN G +A+ A G + +I +P S S R + +GA
Sbjct: 56 RRA-----MRLGYSGITVGTCGNYGASIAYFARLYGLKAVIFIPRSYSNSRVKEMEKYGA 110
Query: 118 ELVLTD----PARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTG 173
E++ D A K I D P S N Y EI++ G
Sbjct: 111 EIIYVDGKYEEAVERSRKFAKENGIYDANPGS------VNSVVDIEAYSAIAYEIYEALG 164
Query: 174 GKIDALVSGIGTGGTVTG 191
DA+ +G G T+ G
Sbjct: 165 DVPDAVAVPVGNGTTLAG 182
|
Length = 319 |
| >gnl|CDD|236417 PRK09224, PRK09224, threonine dehydratase; Reviewed | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 4e-06
Identities = 59/211 (27%), Positives = 97/211 (45%), Gaps = 32/211 (15%)
Query: 18 KTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIA----DAEEKGLIRPGESVL 73
+TPL ++ ++ K E ++P S K R Y+ +A + +G+I
Sbjct: 20 ETPLEKAPKLSARLGNQVLLKREDLQPVFSFKLRGAYNKMAQLTEEQLARGVI------- 72
Query: 74 IEPTS--GNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKG- 130
T+ GN G+A AA G + +I MP + + + AFG E+VL G
Sbjct: 73 ---TASAGNHAQGVALSAARLGIKAVIVMPVTTPDIKVDAVRAFGGEVVL-------HGD 122
Query: 131 ----AVQKAEEIRDKTPNSYVLQQFENPANPKIHYE-TTGPEIWKGTGGKIDALVSGIGT 185
A A E+ ++ +++ F++P I + T EI + +DA+ +G
Sbjct: 123 SFDEAYAHAIELAEEEGLTFI-HPFDDPD--VIAGQGTIAMEILQQHPHPLDAVFVPVGG 179
Query: 186 GGTVTGAGKYLKEHNPEIKLYGVEPVESAVL 216
GG + G Y+K+ PEIK+ GVEP +SA L
Sbjct: 180 GGLIAGVAAYIKQLRPEIKVIGVEPEDSACL 210
|
Length = 504 |
| >gnl|CDD|236317 PRK08638, PRK08638, threonine dehydratase; Validated | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 1e-05
Identities = 82/299 (27%), Positives = 123/299 (41%), Gaps = 44/299 (14%)
Query: 10 KDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGY---SMIADAE-EKGL 65
+ + I KTPL N + + C I KLE M+ S K R + S + DAE KG+
Sbjct: 19 QRLAGRIRKTPLPRSNYLSERCKGEIFLKLENMQRTGSFKIRGAFNKLSSLTDAEKRKGV 78
Query: 66 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 125
+ ++GN G+A A G + MP + +GAE+VL
Sbjct: 79 V--------ACSAGNHAQGVALSCALLGIDGKVVMPKGAPKSKVAATCGYGAEVVLH--G 128
Query: 126 RGMKGAVQKAEEIRDKTPNSYVLQQFENPAN-PKI--HYETTGPEI----WKGTGGKIDA 178
+ K EEI ++ +++ P + PK+ T G EI W +D
Sbjct: 129 DNFNDTIAKVEEIVEEEGRTFI-----PPYDDPKVIAGQGTIGLEILEDLWD-----VDT 178
Query: 179 LVSGIGTGGTVTGAGKYLKEHNPEIKLYGV--EPVE--SAVLSGGKPGPHKIQGIGAG-- 232
++ IG GG + G LK NP I + GV E V +A G+ H+ G A
Sbjct: 179 VIVPIGGGGLIAGIAVALKSINPTIHIIGVQSENVHGMAASFYAGEITTHRTTGTLADGC 238
Query: 233 --FIPGVLDV----NLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAK 285
PG L L+D+ V +S +E I A ++ +V +GA AA+ K
Sbjct: 239 DVSRPGNLTYEIVRELVDDIVLVSEDE-IRNAMKDLIQRNKVVTEGAGALATAALLSGK 296
|
Length = 333 |
| >gnl|CDD|232897 TIGR00263, trpB, tryptophan synthase, beta subunit | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 72/277 (25%), Positives = 116/277 (41%), Gaps = 62/277 (22%)
Query: 72 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLER------RMVLLAFGAELV-LTDP 124
++ E +G G+ A AA G + M A +ER RM LL GA+++ +T
Sbjct: 101 IIAETGAGQHGVATATAAALLGLDCEVYMGAE-DVERQKPNVFRMELL--GAKVIPVTSG 157
Query: 125 ARGMKGAVQKAEEIRDKTPNS----YVLQQFENPAN-PKI--HYETT-GPE----IWKGT 172
+ +K AV +A +RD + YVL P P + +++ G E I +
Sbjct: 158 SGTLKDAVNEA--LRDWVTSVDDTHYVLGSAVGPHPFPTMVRDFQSVIGEEAKEQILEQE 215
Query: 173 GGKIDALVSGIGTGGTVTGA-GKYLKEHNPEIKLYGVE--------PVESAVLSGGKPGP 223
G DA+++ +G G G ++ +P ++L GVE +A L+ G PG
Sbjct: 216 GRLPDAVIACVGGGSNAIGIFYAFID--DPSVQLIGVEAGGLGIDTDKHAATLAKGSPG- 272
Query: 224 HKIQG------------------IGAGF-IPGV-LDVNLLDET-----VQISSEEAIETA 258
+ G + AG PGV + L ET I+ +EA+E
Sbjct: 273 -VLHGMKTYLLQDEDGQILEAHSVSAGLDYPGVGPEHAYLHETGRATYEAITDDEALEAF 331
Query: 259 KLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 295
KLL+ EG++ + S A A +IA ++V
Sbjct: 332 KLLSRNEGIIPALESSHALAHLEKIAPTLPKDQIVVV 368
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model [Amino acid biosynthesis, Aromatic amino acid family]. Length = 385 |
| >gnl|CDD|236244 PRK08329, PRK08329, threonine synthase; Validated | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 5e-05
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 38 KLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLI 97
KL+ ++P S KDR Y +A +E+G+ V+I+ +SGN + LA + ++G ++
Sbjct: 77 KLDYLQPTGSFKDRGTYVTVAKLKEEGI----NEVVID-SSGNAALSLALYSLSEGIKVH 131
Query: 98 ITMPASMSLERRMVLLAFGAELVLTDPAR 126
+ + + S E+ +L GAEL + R
Sbjct: 132 VFVSYNASKEKISLLSRLGAELHFVEGDR 160
|
Length = 347 |
| >gnl|CDD|181319 PRK08246, PRK08246, threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 9e-05
Identities = 78/310 (25%), Positives = 127/310 (40%), Gaps = 57/310 (18%)
Query: 15 LIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLI 74
I +TP++ A + KLE ++ S K R ++ + A P V+
Sbjct: 20 HIRRTPVLEA-DGAGFGPAPVWLKLEHLQHTGSFKARGAFNRLLAAPV-----PAAGVVA 73
Query: 75 EPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP--ARGMKGAV 132
+ GN G+ +A+ AAA G + +P + + L A GAE+V+ A ++ A
Sbjct: 74 -ASGGNAGLAVAYAAAALGVPATVFVPETAPPAKVARLRALGAEVVVVGAEYADALEAAQ 132
Query: 133 QKAEEIRDKTPNSYVLQQFENPANPKIH-YETTGPEIWKGTG----------GKIDALVS 181
A E + L H Y+ PE+ G G +D ++
Sbjct: 133 AFAAE-------TGALL---------CHAYDQ--PEVLAGAGTLGLEIEEQAPGVDTVLV 174
Query: 182 GIGTGGTVTGAGKYLKEHNPEIKLYGVEPVES----AVLSGGKPGPHKIQGIGA------ 231
+G GG + G + + ++ VEP + A L+ G+P + GI A
Sbjct: 175 AVGGGGLIAGIAAWFEGR---ARVVAVEPEGAPTLHAALAAGEPVDVPVSGIAADSLGAR 231
Query: 232 --GFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATA-AAIQI-AKRP 287
G I L + +V + S+EAI A+ AL E L + + GAATA AA+ A P
Sbjct: 232 RVGEIAFALARAHVVTSV-LVSDEAIIAAR-RALWEELRLAVEPGAATALAALLSGAYVP 289
Query: 288 ENAGKLIVVV 297
++ VV+
Sbjct: 290 APGERVAVVL 299
|
Length = 310 |
| >gnl|CDD|235539 PRK05638, PRK05638, threonine synthase; Validated | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 1e-04
Identities = 66/305 (21%), Positives = 119/305 (39%), Gaps = 42/305 (13%)
Query: 17 GKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEP 76
G TPL+ RI + + K E P S +DR+ ++ + + I
Sbjct: 65 GGTPLIR-ARISEKLGENVYIKDETRNPTGSFRDRLATVAVSYG-----LPYAANGFIVA 118
Query: 77 TSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAE 136
+ GN +A +A G + +P + + + ++AFGA+++ + A++ AE
Sbjct: 119 SDGNAAASVAAYSARAGKEAFVVVPRKVDKGKLIQMIAFGAKIIRY--GESVDEAIEYAE 176
Query: 137 EIRDKTPNSYVLQQFENPANPKIHYE---TTGPEIWKGTGGKIDALVSGIGTGGTVTGAG 193
E+ V P I E T E+W+ ++ G+G +
Sbjct: 177 ELARLNGLYNV-----TPEYNIIGLEGQKTIAFELWEEINPT--HVIVPTGSGSYLYSIY 229
Query: 194 KYLKE--------HNPEIKLYGVE-----PVESAVLSGGKPGPHKIQGIGAGFIPGVLD- 239
K KE P KL V+ P+ S +L G K ++ + +G V+
Sbjct: 230 KGFKELLEIGVIEEIP--KLIAVQTERCNPIASEIL-GNKTKCNETKALGLYVKNPVMKE 286
Query: 240 --VNLLDE---TVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRP--ENAGK 292
+ E T + +EE I + L KEG+ +SS A +++ + E K
Sbjct: 287 YVSEAIKESGGTAVVVNEEEIMAGEKLLAKEGIFAELSSAVVMPALLKLGEEGYIEKGDK 346
Query: 293 LIVVV 297
+++VV
Sbjct: 347 VVLVV 351
|
Length = 442 |
| >gnl|CDD|180565 PRK06450, PRK06450, threonine synthase; Validated | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 8/112 (7%)
Query: 38 KLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLI 97
KL+ + P S KDR ++I+ EKG+ + E +SGN G +A AA G +
Sbjct: 70 KLDFLNPTGSYKDRGSVTLISYLAEKGI-----KQISEDSSGNAGASIAAYGAAAGIEVK 124
Query: 98 ITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQ 149
I +P + S + + ++GAE+V RG + V KA E S+VLQ
Sbjct: 125 IFVPETASGGKLKQIESYGAEVV---RVRGSREDVAKAAENSGYYYASHVLQ 173
|
Length = 338 |
| >gnl|CDD|236318 PRK08639, PRK08639, threonine dehydratase; Validated | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 2e-04
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 171 GTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVE----SAVLSGGKP 221
G D + +G GG ++G YLKE +P+ K+ GVEP A L GKP
Sbjct: 175 EKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEPAGAASMKAALEAGKP 229
|
Length = 420 |
| >gnl|CDD|236182 PRK08198, PRK08198, threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 3e-04
Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 29/142 (20%)
Query: 176 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV----LSGGKP----GPHKI- 226
+D +V IG GG ++G +K PE+++ GV+ + L+ G+P I
Sbjct: 171 VDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQAEGAPAMPESLAAGRPVELESVDTIA 230
Query: 227 QGIGAGFIPGVLDV----NLLDETVQISSEE---AI----ETAKLLALKEGLLVGISSGA 275
GI PG L L+D+ V +S EE AI E AKL+ EG +GA
Sbjct: 231 DGIAVK-RPGDLTFEIIRELVDDVVTVSDEEIARAILLLLERAKLVV--EG------AGA 281
Query: 276 ATAAAIQIAKRPENAGKLIVVV 297
+ AA+ K K++ V+
Sbjct: 282 VSVAALLSGKLDVKGKKVVAVL 303
|
Length = 404 |
| >gnl|CDD|180539 PRK06352, PRK06352, threonine synthase; Validated | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 4e-04
Identities = 75/315 (23%), Positives = 124/315 (39%), Gaps = 53/315 (16%)
Query: 17 GKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEP 76
G TPL+ L + + K E + P S KDR +A A+E+ G +I
Sbjct: 27 GNTPLIPLPNLSKELGVTLYGKYEGLNPTGSFKDRGMVMAVAKAKEE-----GAEAVICA 81
Query: 77 TSGNTGIGLAFMAAAKGYRLIITMP-ASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 135
++GNT A A G + I +P ++L + + +GA+++ A++
Sbjct: 82 STGNTSAAAAAYATRAGLKAYIVIPEGKVALGKLAQAVMYGADIISIQG--NFDEALKSV 139
Query: 136 EEIRDKTPNSYVLQQFENPANP-KIHYETTGP-EIWKGTGGKIDALVSGIGTGGTVTGAG 193
E+ + + V N NP ++ + T EI + G D L +G G ++
Sbjct: 140 RELAETEAVTLV-----NSVNPYRLEGQKTAAFEICEQLGSAPDVLAIPVGNAGNISAYW 194
Query: 194 KYLKEHNPEI-----KLYGVEPVESAVLSGGKP--GPHKIQG---IG------------- 230
K KE N +++G E +A + GKP P I IG
Sbjct: 195 KGFKEWNEAKASGLPRMHGFEAEGAAAIVQGKPIDNPETIATAIRIGNPASWGLAEAARD 254
Query: 231 --AGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQ-IAKRP 287
G+I V D +E + K +A ++G+ + S A+ A IQ +A
Sbjct: 255 ESGGYIHSVTD------------DEIVNAYKKIAAQDGVFIEPGSAASLAGVIQHVANGT 302
Query: 288 ENAGKLIVVVFPSFG 302
G+ +V VF G
Sbjct: 303 IKKGETVVCVFTGNG 317
|
Length = 351 |
| >gnl|CDD|237513 PRK13803, PRK13803, bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 5e-04
Identities = 86/346 (24%), Positives = 136/346 (39%), Gaps = 96/346 (27%)
Query: 19 TPLVYLNRIVDGCVARIAAKLEMMEPCSSVK--DRIGYSMIADAEEKGLIRPGESVLIEP 76
TPL R+ D ARI K E + S K + +G +++A R G++ +I
Sbjct: 272 TPLTEAKRLSDIYGARIYLKREDLNHTGSHKINNALGQALLAK-------RMGKTRIIAE 324
Query: 77 T-SGNTGIGLAFMAAAKGYRLIITMPASMSLER------RMVLLAFGAELV-LTDPARGM 128
T +G G+ A A G + I M ++R RM LL GA ++ + ++ +
Sbjct: 325 TGAGQHGVATATACALFGLKCTIFMGEE-DIKRQALNVERMKLL--GANVIPVLSGSKTL 381
Query: 129 KGAVQKAEEIRDKTPNSYVLQQFENPANPKIHY---ETTGP------------------- 166
K AV +A IRD + P HY GP
Sbjct: 382 KDAVNEA--IRDWVAS-----------VPDTHYLIGSAVGPHPYPEMVAYFQSVIGEEAK 428
Query: 167 -EIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPV--------ESAVLS 217
++ + TG DA+++ +G G G + + +P +KL GVE +A +
Sbjct: 429 EQLKEQTGKLPDAIIACVGGGSNAIGIFYHFLD-DPSVKLIGVEAGGKGVNTGEHAATIK 487
Query: 218 GGKPG-------------------PHKIQGIGAGF-IPGV--LDVNLLDET----VQISS 251
G+ G PH I AG PG+ + NL + ++
Sbjct: 488 KGRKGVLHGSMTYLMQDENGQILEPHSIS---AGLDYPGIGPMHANLFETGRAIYTSVTD 544
Query: 252 EEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVV 297
EEA++ KLLA EG++ + S A A + R + K IV+V
Sbjct: 545 EEALDAFKLLAKLEGIIPALESSHALAYLKEG--RKKFKKKDIVIV 588
|
Length = 610 |
| >gnl|CDD|235699 PRK06110, PRK06110, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 6e-04
Identities = 19/54 (35%), Positives = 26/54 (48%)
Query: 67 RPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120
P +I T GN G +AF A G I +P S+E+ + A GAEL+
Sbjct: 67 GPRVRGVISATRGNHGQSVAFAARRHGLAATIVVPHGNSVEKNAAMRALGAELI 120
|
Length = 322 |
| >gnl|CDD|223211 COG0133, TrpB, Tryptophan synthase beta chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.001
Identities = 89/336 (26%), Positives = 147/336 (43%), Gaps = 77/336 (22%)
Query: 19 TPLVYLNRIVDGCVARIAAKLEMMEPCSSVK--DRIGYSMIADAEEKGLIRPGESVLIEP 76
TPL + R+ + A+I K E + + K + +G +++A R G++ +I
Sbjct: 57 TPLYFAERLTEHLGAKIYLKREDLNHTGAHKINNALGQALLAK-------RMGKTRIIAE 109
Query: 77 T-SGNTGIGLAFMAAAKGYRLIITMPASMSLER------RMVLLAFGAELV-LTDPARGM 128
T +G G+ A AA G +I M A +ER RM LL GAE+V +T + +
Sbjct: 110 TGAGQHGVATATAAALFGLECVIYMGAE-DVERQALNVFRMRLL--GAEVVPVTSGSGTL 166
Query: 129 KGAVQKAEEIRDKTPN----SYVLQQFENPANP---------KIHYETTGPEIWKGTGGK 175
K A+ +A +RD N Y++ P +P + E +I + G
Sbjct: 167 KDAINEA--LRDWVTNVEDTHYLIGSAAGP-HPYPTIVRDFQSVIGEEAKAQILEKEGRL 223
Query: 176 IDALVSGIGTGGTVTGA-GKYLKEHNPEIKLYGVEP----VES----AVLSGGKPG---- 222
DA+V+ +G G G ++ + ++L GVE +E+ A L+ G+PG
Sbjct: 224 PDAVVACVGGGSNAIGIFHPFIDD--ESVRLIGVEAAGKGIETGKHAATLTAGRPGVLHG 281
Query: 223 ---------------PHKIQGIGAGF-IPGV-LDVNLLDET-----VQISSEEAIETAKL 260
H I AG PGV + L + V I+ EEA+E +L
Sbjct: 282 MKTYLLQDEDGQILESHSIS---AGLDYPGVGPEHAYLKDIGRAEYVSITDEEALEAFQL 338
Query: 261 LALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVV 296
L+ EG++ + S A A A+++A + ++IVV
Sbjct: 339 LSRLEGIIPALESSHALAYALKLAPK-LPKDEIIVV 373
|
Length = 396 |
| >gnl|CDD|107207 cd06446, Trp-synth_B, Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.001
Identities = 42/128 (32%), Positives = 57/128 (44%), Gaps = 32/128 (25%)
Query: 200 NPEIKLYGVEPV--------ESAVLSGGKPG-------------PHKIQG---IGAGF-I 234
+ ++KL GVE +A L GG G +I I AG
Sbjct: 226 DKDVKLIGVEAGGCGLETGGHAAYLFGGTAGVLHGLKMYTLQDEDGQIVPPHSISAGLDY 285
Query: 235 PGV--LDVNLLD----ETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE 288
PGV L D E V ++ EEA+E KLLA EG++ + S A A AI++AK+
Sbjct: 286 PGVGPEHAYLKDSGRVEYVAVTDEEALEAFKLLARTEGIIPALESSHAIAYAIKLAKKL- 344
Query: 289 NAGKLIVV 296
K+IVV
Sbjct: 345 GKEKVIVV 352
|
In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions. Length = 365 |
| >gnl|CDD|234245 TIGR03528, 2_3_DAP_am_ly, diaminopropionate ammonia-lyase | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.003
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 69 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 123
G+ + T GN G G+A+ A G + ++ MP + ER + A GAE +TD
Sbjct: 112 GDITFVTATDGNHGRGVAWAANQLGQKSVVYMPKGSAQERLENIRAEGAECTITD 166
|
Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate. Length = 396 |
| >gnl|CDD|236339 PRK08813, PRK08813, threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 38.5 bits (89), Expect = 0.003
Identities = 70/278 (25%), Positives = 114/278 (41%), Gaps = 28/278 (10%)
Query: 19 TPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTS 78
TPL Y R + KLE ++ S K R + + E+G RP +I ++
Sbjct: 40 TPLHYAERF------GVWLKLENLQRTGSYKVRGALNALLAGLERGDERP----VICASA 89
Query: 79 GNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEI 138
GN G+A+ A G + I MP + + +GA + A A E+
Sbjct: 90 GNHAQGVAWSAYRLGVQAITVMPHGAPQTKIAGVAHWGA--TVRQHGNSYDEAYAFAREL 147
Query: 139 RDKTPNSY-VLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLK 197
D+ N Y L F++P + T G E+ D ++ IG GG +G LK
Sbjct: 148 ADQ--NGYRFLSAFDDP-DVIAGQGTVGIEL---AAHAPDVVIVPIGGGGLASGVALALK 201
Query: 198 EHNPEI---KLYGVEPVESAV---LSGGKPGPHKIQGIGA---GFIPGVLDVNLLDETVQ 248
+ ++ GV+ + A+ L P G+ GF+ L +LLD+ V
Sbjct: 202 SQGVRVVGAQVEGVDSMARAIRGDLREIAPVATLADGVKVKIPGFLTRRLCSSLLDDVVI 261
Query: 249 ISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKR 286
+ E ET LAL+E ++ + A AA +++ +
Sbjct: 262 VREAELRETLVRLALEEHVIAEGAGALALAAGRRVSGK 299
|
Length = 349 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 325 | |||
| PLN02565 | 322 | cysteine synthase | 100.0 | |
| COG0031 | 300 | CysK Cysteine synthase [Amino acid transport and m | 100.0 | |
| PLN02556 | 368 | cysteine synthase/L-3-cyanoalanine synthase | 100.0 | |
| PLN00011 | 323 | cysteine synthase | 100.0 | |
| PLN03013 | 429 | cysteine synthase | 100.0 | |
| TIGR01136 | 299 | cysKM cysteine synthases. This model discriminates | 100.0 | |
| PRK11761 | 296 | cysM cysteine synthase B; Provisional | 100.0 | |
| PLN02356 | 423 | phosphateglycerate kinase | 100.0 | |
| PRK10717 | 330 | cysteine synthase A; Provisional | 100.0 | |
| TIGR01139 | 298 | cysK cysteine synthase A. This model distinguishes | 100.0 | |
| KOG1252 | 362 | consensus Cystathionine beta-synthase and related | 100.0 | |
| TIGR01138 | 290 | cysM cysteine synthase B. Alternate name: O-acetyl | 100.0 | |
| TIGR01137 | 454 | cysta_beta cystathionine beta-synthase. Members of | 100.0 | |
| cd01561 | 291 | CBS_like CBS_like: This subgroup includes Cystathi | 100.0 | |
| COG1171 | 347 | IlvA Threonine dehydratase [Amino acid transport a | 100.0 | |
| PRK12483 | 521 | threonine dehydratase; Reviewed | 100.0 | |
| PLN02970 | 328 | serine racemase | 100.0 | |
| PRK08638 | 333 | threonine dehydratase; Validated | 100.0 | |
| PRK08526 | 403 | threonine dehydratase; Provisional | 100.0 | |
| PRK06352 | 351 | threonine synthase; Validated | 100.0 | |
| PRK06608 | 338 | threonine dehydratase; Provisional | 100.0 | |
| cd06448 | 316 | L-Ser-dehyd Serine dehydratase is a pyridoxal phos | 100.0 | |
| PRK08197 | 394 | threonine synthase; Validated | 100.0 | |
| PRK07048 | 321 | serine/threonine dehydratase; Validated | 100.0 | |
| PRK06382 | 406 | threonine dehydratase; Provisional | 100.0 | |
| PLN02550 | 591 | threonine dehydratase | 100.0 | |
| PRK06110 | 322 | hypothetical protein; Provisional | 100.0 | |
| PRK07476 | 322 | eutB threonine dehydratase; Provisional | 100.0 | |
| PRK08198 | 404 | threonine dehydratase; Provisional | 100.0 | |
| TIGR02079 | 409 | THD1 threonine dehydratase. This model represents | 100.0 | |
| PRK06721 | 352 | threonine synthase; Reviewed | 100.0 | |
| PRK07591 | 421 | threonine synthase; Validated | 100.0 | |
| TIGR01124 | 499 | ilvA_2Cterm threonine ammonia-lyase, biosynthetic, | 100.0 | |
| PRK07334 | 403 | threonine dehydratase; Provisional | 100.0 | |
| PRK08639 | 420 | threonine dehydratase; Validated | 100.0 | |
| TIGR02991 | 317 | ectoine_eutB ectoine utilization protein EutB. Mem | 100.0 | |
| PRK06815 | 317 | hypothetical protein; Provisional | 100.0 | |
| PRK07409 | 353 | threonine synthase; Validated | 100.0 | |
| PRK02991 | 441 | D-serine dehydratase; Provisional | 100.0 | |
| PRK08813 | 349 | threonine dehydratase; Provisional | 100.0 | |
| PLN02569 | 484 | threonine synthase | 100.0 | |
| PRK09224 | 504 | threonine dehydratase; Reviewed | 100.0 | |
| TIGR01127 | 380 | ilvA_1Cterm threonine dehydratase, medium form. A | 100.0 | |
| cd01562 | 304 | Thr-dehyd Threonine dehydratase: The first step in | 100.0 | |
| PRK08329 | 347 | threonine synthase; Validated | 100.0 | |
| PRK06260 | 397 | threonine synthase; Validated | 100.0 | |
| PRK08246 | 310 | threonine dehydratase; Provisional | 100.0 | |
| cd01563 | 324 | Thr-synth_1 Threonine synthase is a pyridoxal phos | 100.0 | |
| PRK06450 | 338 | threonine synthase; Validated | 100.0 | |
| TIGR02035 | 431 | D_Ser_am_lyase D-serine ammonia-lyase. This family | 100.0 | |
| cd06447 | 404 | D-Ser-dehyd D-Serine dehydratase is a pyridoxal ph | 100.0 | |
| PRK06381 | 319 | threonine synthase; Validated | 100.0 | |
| KOG1250 | 457 | consensus Threonine/serine dehydratases [Amino aci | 100.0 | |
| PRK05638 | 442 | threonine synthase; Validated | 100.0 | |
| PRK08206 | 399 | diaminopropionate ammonia-lyase; Provisional | 100.0 | |
| KOG1481 | 391 | consensus Cysteine synthase [Amino acid transport | 100.0 | |
| TIGR00260 | 328 | thrC threonine synthase. Involved in threonine bio | 100.0 | |
| cd00640 | 244 | Trp-synth-beta_II Tryptophan synthase beta superfa | 100.0 | |
| KOG1251 | 323 | consensus Serine racemase [Signal transduction mec | 100.0 | |
| cd06446 | 365 | Trp-synth_B Tryptophan synthase-beta: Trptophan sy | 100.0 | |
| PRK13028 | 402 | tryptophan synthase subunit beta; Provisional | 100.0 | |
| PRK04346 | 397 | tryptophan synthase subunit beta; Validated | 100.0 | |
| TIGR00263 | 385 | trpB tryptophan synthase, beta subunit. Tryptophan | 100.0 | |
| PLN02618 | 410 | tryptophan synthase, beta chain | 100.0 | |
| TIGR01415 | 419 | trpB_rel pyridoxal-phosphate dependent TrpB-like e | 100.0 | |
| TIGR03844 | 398 | cysteate_syn cysteate synthase. Members of this fa | 100.0 | |
| TIGR01747 | 376 | diampropi_NH3ly diaminopropionate ammonia-lyase fa | 100.0 | |
| PRK12391 | 427 | tryptophan synthase subunit beta; Reviewed | 100.0 | |
| PRK13802 | 695 | bifunctional indole-3-glycerol phosphate synthase/ | 100.0 | |
| TIGR03528 | 396 | 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Mem | 100.0 | |
| cd06449 | 307 | ACCD Aminocyclopropane-1-carboxylate deaminase (AC | 100.0 | |
| TIGR01275 | 311 | ACC_deam_rel pyridoxal phosphate-dependent enzymes | 100.0 | |
| PRK12390 | 337 | 1-aminocyclopropane-1-carboxylate deaminase; Provi | 100.0 | |
| PRK03910 | 331 | D-cysteine desulfhydrase; Validated | 100.0 | |
| PF00291 | 306 | PALP: Pyridoxal-phosphate dependent enzyme; InterP | 100.0 | |
| TIGR01274 | 337 | ACC_deam 1-aminocyclopropane-1-carboxylate deamina | 100.0 | |
| PRK13803 | 610 | bifunctional phosphoribosylanthranilate isomerase/ | 100.0 | |
| PRK14045 | 329 | 1-aminocyclopropane-1-carboxylate deaminase; Provi | 100.0 | |
| COG0498 | 411 | ThrC Threonine synthase [Amino acid transport and | 100.0 | |
| COG0133 | 396 | TrpB Tryptophan synthase beta chain [Amino acid tr | 100.0 | |
| cd01560 | 460 | Thr-synth_2 Threonine synthase catalyzes the final | 100.0 | |
| PRK09225 | 462 | threonine synthase; Validated | 100.0 | |
| COG2515 | 323 | Acd 1-aminocyclopropane-1-carboxylate deaminase [A | 100.0 | |
| COG1350 | 432 | Predicted alternative tryptophan synthase beta-sub | 100.0 | |
| KOG1395 | 477 | consensus Tryptophan synthase beta chain [Amino ac | 100.0 | |
| COG3048 | 443 | DsdA D-serine dehydratase [Amino acid transport an | 99.96 | |
| KOG2616 | 266 | consensus Pyridoxalphosphate-dependent enzyme/pred | 96.29 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 87.39 | |
| KOG0025 | 354 | consensus Zn2+-binding dehydrogenase (nuclear rece | 86.56 | |
| PF03808 | 172 | Glyco_tran_WecB: Glycosyl transferase WecB/TagA/Cp | 85.22 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 84.63 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 84.32 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 84.28 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 84.25 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 83.99 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 83.37 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 83.01 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 82.44 | |
| TIGR00670 | 301 | asp_carb_tr aspartate carbamoyltransferase. Ornith | 81.99 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 80.66 |
| >PLN02565 cysteine synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-72 Score=515.05 Aligned_cols=321 Identities=92% Similarity=1.371 Sum_probs=297.4
Q ss_pred ccchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHH
Q 020528 5 KSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIG 84 (325)
Q Consensus 5 ~~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 84 (325)
++...++++..+|+|||++++.++...+.+||+|+|++|||||||||+|.+++..+.++|.+.+|++.||++|+||||.|
T Consensus 2 ~~~~~~~~~~~ig~TPLv~l~~l~~~~~~~i~~K~E~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~a 81 (322)
T PLN02565 2 KSSIAKDVTELIGKTPLVYLNNVVDGCVARIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIG 81 (322)
T ss_pred cchhhhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHH
Confidence 34566789999999999999888766667999999999999999999999999999999998888778999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhch
Q 020528 85 LAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETT 164 (325)
Q Consensus 85 lA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~ 164 (325)
+|++|+.+|++|+||||++++..|+++++.+||+|+.+++..+++++.+.+++++++.+++|+++||+|+.|+..||+|+
T Consensus 82 lA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~n~~n~~~~~~t~ 161 (322)
T PLN02565 82 LAFMAAAKGYKLIITMPASMSLERRIILLAFGAELVLTDPAKGMKGAVQKAEEILAKTPNSYILQQFENPANPKIHYETT 161 (322)
T ss_pred HHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHhCCCcEeecccCCHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999875556888899999988766789999999999988899999
Q ss_pred HHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCCcccccCCCCCCccccccccCC
Q 020528 165 GPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLD 244 (325)
Q Consensus 165 ~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d 244 (325)
++||++|+.+.||+||+|+|+||+++|++++||+.+|++|||+|||++++++..+++.++.+++++.+..|..+..+.+|
T Consensus 162 a~Ei~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~~s~~~~~g~~~~~~~~glg~~~~~~~~~~~~vd 241 (322)
T PLN02565 162 GPEIWKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVDLLD 241 (322)
T ss_pred HHHHHHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCccCCCCCCCCCCCcCCHhHCC
Confidence 99999999768999999999999999999999999999999999999999988777777888999887777777778899
Q ss_pred eEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhHHHHHHhcCCCCC
Q 020528 245 ETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFESVKKEAESMVFE 324 (325)
Q Consensus 245 ~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~~~~~~~~~~~~~ 324 (325)
+.+.|+|+|+++++++|++++|+++||+||+++++++++++....++++||+|+||+|.||+++++|+.+..+..|++|+
T Consensus 242 ~~v~V~d~ea~~a~~~l~~~~gi~vg~ssga~laaa~~~a~~~~~~~~~vV~v~~d~G~ky~~~~~~~~~~~~~~~~~~~ 321 (322)
T PLN02565 242 EVVQVSSDEAIETAKLLALKEGLLVGISSGAAAAAAIKIAKRPENAGKLIVVIFPSFGERYLSSVLFESVKKEAENMVFE 321 (322)
T ss_pred EEEEECHHHHHHHHHHHHHHhCcEEeccHHHHHHHHHHHHHhcCCCCCeEEEEECCCccccCCchhhHHHHHHHhcCccC
Confidence 99999999999999999999999999999999999999987664568899999999999999999999999999999998
Q ss_pred C
Q 020528 325 P 325 (325)
Q Consensus 325 ~ 325 (325)
|
T Consensus 322 ~ 322 (322)
T PLN02565 322 P 322 (322)
T ss_pred C
Confidence 7
|
|
| >COG0031 CysK Cysteine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-70 Score=486.40 Aligned_cols=295 Identities=60% Similarity=0.969 Sum_probs=280.2
Q ss_pred HHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHH
Q 020528 10 KDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMA 89 (325)
Q Consensus 10 ~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a 89 (325)
+.+.+.+|+|||+++.+++...+++||+|+|++||+||.|||.|.+++.+|+++|.++|| .+||++||||+|++||+.|
T Consensus 3 ~~~~~~iG~TPlvrL~~~~~~~~~~i~~KlE~~NP~gSvKDR~A~~mI~~Ae~~G~l~pG-~tIVE~TSGNTGI~LA~va 81 (300)
T COG0031 3 ESILDLIGNTPLVRLNRLSPGTGVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLKPG-GTIVEATSGNTGIALAMVA 81 (300)
T ss_pred cchHHHhCCCCcEeecccCCCCCceEEEEhhhcCCCCchhHHHHHHHHHHHHHcCCCCCC-CEEEEcCCChHHHHHHHHH
Confidence 457888999999999999887788999999999999999999999999999999999999 5799999999999999999
Q ss_pred HHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCC-hhHHHHHHHHHHHhCCC-eEEeCCCCCCcchHhHHhchHHH
Q 020528 90 AAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG-MKGAVQKAEEIRDKTPN-SYVLQQFENPANPKIHYETTGPE 167 (325)
Q Consensus 90 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~-~~~~~~~a~~~~~~~~~-~~~~~~~~n~~~~~~g~~t~~~E 167 (325)
+.+|++++++||++++.+|+++|++|||+|+.++...+ +..+.+++++++++.++ .++.+||+||.||.+|+.+++.|
T Consensus 82 a~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~E 161 (300)
T COG0031 82 AAKGYRLIIVMPETMSQERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGPE 161 (300)
T ss_pred HHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHhCCCceEchhhcCCCccHHHHHhhhHHH
Confidence 99999999999999999999999999999999998444 78899999999999887 77888999999999999999999
Q ss_pred HHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCCcccccCCCCCCccccccccCCeEE
Q 020528 168 IWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETV 247 (325)
Q Consensus 168 i~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~ 247 (325)
|++|+++.+|+||+++|||||++|++++||+.+|++|+++|||++|+.+..|. .++.++||+.+++|..++.+++|+++
T Consensus 162 I~~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~~G~-g~~~i~GIG~~~ip~~~~~~~iD~v~ 240 (300)
T COG0031 162 IWQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGE-GPHKIEGIGAGFVPENLDLDLIDEVI 240 (300)
T ss_pred HHHHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCcccCCCC-CCcccCCCCCCcCCcccccccCceEE
Confidence 99999888999999999999999999999999999999999999999887666 88999999999999889999999999
Q ss_pred EeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcc
Q 020528 248 QISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLS 307 (325)
Q Consensus 248 ~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~ 307 (325)
.|+|+|+++.+++|+++||+++++|||++++++++++++.. ++++||+|+||+|+||+|
T Consensus 241 ~V~d~~A~~~~r~La~~eGilvG~SsGA~~~aa~~~a~~~~-~g~~IVti~pD~G~RYls 299 (300)
T COG0031 241 RVSDEEAIATARRLAREEGLLVGISSGAALAAALKLAKELP-AGKTIVTILPDSGERYLS 299 (300)
T ss_pred EECHHHHHHHHHHHHHHhCeeecccHHHHHHHHHHHHHhcC-CCCeEEEEECCCcccccC
Confidence 99999999999999999999999999999999999988764 689999999999999987
|
|
| >PLN02556 cysteine synthase/L-3-cyanoalanine synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-70 Score=505.85 Aligned_cols=318 Identities=62% Similarity=1.036 Sum_probs=294.0
Q ss_pred hhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHH
Q 020528 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAF 87 (325)
Q Consensus 8 ~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 87 (325)
+.+++.+.+|+|||+++++++...|++||+|+|++|||||||||++.+++.+++++|.+.||.++||++|+||||+|+|+
T Consensus 49 ~~~~v~~~ig~TPl~~l~~l~~~~g~~I~~KlE~~nPtGS~KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G~alA~ 128 (368)
T PLN02556 49 IKTDASQLIGKTPLVYLNKVTEGCGAYIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMGISLAF 128 (368)
T ss_pred hhhhHHHhcCCCccEEccccccccCCEEEEEecccCCccchHHHHHHHHHHHHHHcCCcCCCCCEEEEeCCchHHHHHHH
Confidence 45788999999999999999877788999999999999999999999999999999999999888999999999999999
Q ss_pred HHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHH
Q 020528 88 MAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPE 167 (325)
Q Consensus 88 ~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~E 167 (325)
+|+.+|++|+|+||++++..|+++++.+||+|+.++...++...++.+++++++.+++++++||+|+.|+..||.++++|
T Consensus 129 ~a~~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~np~~~~~g~~ttg~E 208 (368)
T PLN02556 129 MAAMKGYKMILTMPSYTSLERRVTMRAFGAELVLTDPTKGMGGTVKKAYELLESTPDAFMLQQFSNPANTQVHFETTGPE 208 (368)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCccHHHHHHHHHHHhcCCCCccCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999864445678888888888877889999999999966799999999
Q ss_pred HHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCCcccccCCCCCCccccccccCCeEE
Q 020528 168 IWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETV 247 (325)
Q Consensus 168 i~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~ 247 (325)
|++|+.+.+|+||+|+|+||+++|+++++|+.+|++|||+|||++++.+..+.+..+.+.+++.+..|+.++.+.+|+++
T Consensus 209 I~eq~~~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigVep~~~~~~~~g~~~~~~i~g~g~~~~p~~~~~~~~d~~v 288 (368)
T PLN02556 209 IWEDTLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEPAESNVLNGGKPGPHHITGNGVGFKPDILDMDVMEKVL 288 (368)
T ss_pred HHHhcCCCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEEeeCCCccccCCCCCCeeeeeccCCCCccccchhhCCeEE
Confidence 99998668999999999999999999999999999999999999998887777777777888877767778888899999
Q ss_pred EeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhHHHHHHhcCCCCCC
Q 020528 248 QISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFESVKKEAESMVFEP 325 (325)
Q Consensus 248 ~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~~~~~~~~~~~~~~ 325 (325)
.|+|+|+++++++|++++|+++||+||++++++++++++...++++||+|+||+|.||+|+++|++|.++..+++|+|
T Consensus 289 ~Vsd~ea~~a~r~l~~~eGi~vg~ssgA~~~aal~~a~~~~~~~~~IV~v~~d~g~kY~~~~~~~~~~~~~~~~~~~~ 366 (368)
T PLN02556 289 EVSSEDAVNMARELALKEGLMVGISSGANTVAALRLAKMPENKGKLIVTVHPSFGERYLSSVLFQELRKEAENMQPVS 366 (368)
T ss_pred EECHHHHHHHHHHHHHHcCCEEecCHHHHHHHHHHHhhhccCCcCEEEEEECCCCcccCChhhhHHHHHHHHhcCCcC
Confidence 999999999999999999999999999999999988776544688999999999999999999999999999999986
|
|
| >PLN00011 cysteine synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-67 Score=486.10 Aligned_cols=318 Identities=71% Similarity=1.119 Sum_probs=289.3
Q ss_pred chhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHH
Q 020528 7 VIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLA 86 (325)
Q Consensus 7 ~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA 86 (325)
.+.+++.+.+++|||+++++++...+.+||+|+|++|||||||||++.+++..++++|.+.||.++||++|+||||+|+|
T Consensus 6 ~~~~~~~~~~g~TPl~~l~~l~~~~g~~i~~K~E~~nPtGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~alA 85 (323)
T PLN00011 6 LIKNDVTELIGNTPMVYLNNIVDGCVARIAAKLEMMEPCSSVKDRIAYSMIKDAEDKGLITPGKSTLIEATAGNTGIGLA 85 (323)
T ss_pred hHHhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccccchHHHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHH
Confidence 35567888999999999999886666799999999999999999999999999999999988877899999999999999
Q ss_pred HHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHH
Q 020528 87 FMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGP 166 (325)
Q Consensus 87 ~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~ 166 (325)
++|+.+|++|+||||++++..|+++++.+||+|+.++...+.+++.+.+++++++.+++++++||+|+.|+..||.++++
T Consensus 86 ~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~n~~n~~~~~~t~~~ 165 (323)
T PLN00011 86 CIGAARGYKVILVMPSTMSLERRIILRALGAEVHLTDQSIGLKGMLEKAEEILSKTPGGYIPQQFENPANPEIHYRTTGP 165 (323)
T ss_pred HHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHhCCCeEEeccccCCccHHHHHHHHHH
Confidence 99999999999999999999999999999999999997544556788888888876678999999999988789999999
Q ss_pred HHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCCcccccCCCCCCccccccccCCeE
Q 020528 167 EIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDET 246 (325)
Q Consensus 167 Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~ 246 (325)
||++|+.++||+||+|+|+||+++|+++++|+.+|++|||+|||++++++..+++..+.+++++.+..|..+....+|+.
T Consensus 166 EI~~q~~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigVe~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~ 245 (323)
T PLN00011 166 EIWRDSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVESAVLSGGQPGPHLIQGIGSGIIPFNLDLTIVDEI 245 (323)
T ss_pred HHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEEecCCCcccCCCCCCCCCCCCCCCCCCCcccChhhCCeE
Confidence 99999866899999999999999999999999999999999999999988877777777889988766777777889999
Q ss_pred EEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhHHHHHHhcCCCCC
Q 020528 247 VQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFESVKKEAESMVFE 324 (325)
Q Consensus 247 ~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~~~~~~~~~~~~~ 324 (325)
+.|+|+|++++++++++++|+++||+||++++++++++++...++++||+|+||+|+||+|+.+|+.|..+.++++.+
T Consensus 246 v~V~d~e~~~a~~~l~~~~Gi~~~~ssga~laaa~~~~~~~~~~~~~vv~i~~d~G~ky~~~~~~~~~~~~~~~~~~~ 323 (323)
T PLN00011 246 IQVTGEEAIETAKLLALKEGLLVGISSGAAAAAALKVAKRPENAGKLIVVIFPSGGERYLSTKLFESVRYEAENLPIE 323 (323)
T ss_pred EEECHHHHHHHHHHHHHhcCCeEcccHHHHHHHHHHHHHhccCCCCeEEEEECCCccccCChhhhHHHHHhhhcCCCC
Confidence 999999999999999999999999999999999999877643467899999999999999999999988877887653
|
|
| >PLN03013 cysteine synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-68 Score=494.10 Aligned_cols=302 Identities=73% Similarity=1.167 Sum_probs=279.6
Q ss_pred hhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHH
Q 020528 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAF 87 (325)
Q Consensus 8 ~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 87 (325)
+.+++.+.+|+|||++++.++...+++||+|+|++|||||||||+|.+++.+++++|.+.+|+.+||++|+||||+|+|+
T Consensus 113 ~~~~i~~~iG~TPLv~l~~l~~~~g~~Iy~KlE~lNPtGSfKdR~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~ALA~ 192 (429)
T PLN03013 113 IADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAF 192 (429)
T ss_pred HHHHHHhcCCCCCeEECcccccccCCeEEEEeccCCCccccHHHHHHHHHHHHHHcCCcCCCCcEEEEECCcHHHHHHHH
Confidence 56889999999999999999877778999999999999999999999999999999999998778999999999999999
Q ss_pred HHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHH
Q 020528 88 MAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPE 167 (325)
Q Consensus 88 ~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~E 167 (325)
+|+.+|++++||||++++..|+++|+.+||+|+.+++..+++++.+.+++++++.++++|++||+|+.|+..||+++|+|
T Consensus 193 ~a~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi~v~~~~~~~~a~~~A~ela~~~~g~~~~~qy~Np~n~~ah~~ttg~E 272 (429)
T PLN03013 193 IAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPE 272 (429)
T ss_pred HHHHcCCCEEEEECCCCcHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHhhcCCeEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999876557788999999988866789999999999977899999999
Q ss_pred HHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCCcccccCCCCCCccccccccCCeEE
Q 020528 168 IWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETV 247 (325)
Q Consensus 168 i~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~ 247 (325)
|++|+.++||+||+|+|+||+++|++++||+.+|++|||+|||++++.+..+++.++.++|++.+.+|+.++++.+|+++
T Consensus 273 I~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep~gs~~l~~g~~~~~~i~Glg~~~ip~~~~~~~vD~vv 352 (429)
T PLN03013 273 IWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIPKNLDQKIMDEVI 352 (429)
T ss_pred HHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEeCCCchhhCCCCCCcccCcccCCcCCHhHHHHhccEEE
Confidence 99999778999999999999999999999999999999999999999887777778888999988888888888999999
Q ss_pred EeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEE-EEEeCCCCCCCcchh
Q 020528 248 QISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLI-VVVFPSFGERYLSSV 309 (325)
Q Consensus 248 ~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~v-v~i~t~~g~~~~~~~ 309 (325)
.|+|+|+++++++|++++|+++||++|++++++++++++...++++| |++.+++|++|+++.
T Consensus 353 ~VsD~ea~~a~r~La~~eGi~vG~SSGAalaAalkla~~~~~~g~~IVv~i~~d~g~~Y~~~~ 415 (429)
T PLN03013 353 AISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPENAGKLIAVSLFASGRDIYTPRC 415 (429)
T ss_pred EECHHHHHHHHHHHHHHcCCEEecCHHHHHHHHHHHhhhccCCCCEEEEEEcCCCchhchhhh
Confidence 99999999999999999999999999999999999877544456665 667788899999983
|
|
| >TIGR01136 cysKM cysteine synthases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-65 Score=468.67 Aligned_cols=297 Identities=65% Similarity=1.040 Sum_probs=271.6
Q ss_pred hhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHc
Q 020528 13 TELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAK 92 (325)
Q Consensus 13 ~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~ 92 (325)
...+++|||++++.|+...+.+||+|+|++|||||||+|++.+++..+.++|.+.+| .+|+++|+||||+|+|++|+.+
T Consensus 2 ~~~vg~TPL~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~~ 80 (299)
T TIGR01136 2 EELIGNTPLVRLNRLAPGCDARVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPG-DTIIEATSGNTGIALAMVAAAK 80 (299)
T ss_pred ccccCCCceEEccccCCCCCceEEEEEcccCCCCCccHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHHHHHHc
Confidence 356899999999999987788999999999999999999999999999999987776 4689999999999999999999
Q ss_pred CCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHHHhhh
Q 020528 93 GYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGT 172 (325)
Q Consensus 93 g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~ql 172 (325)
|++|+||||++++..|+++++.+||+|+.++++.+++++.+.+++++++.+++++++||+|+.|++.||+++++||++|+
T Consensus 81 G~~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql 160 (299)
T TIGR01136 81 GYKLILTMPETMSLERRKLLRAYGAELILTPAEEGMKGAIDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDT 160 (299)
T ss_pred CCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhhCCCeEecCCCCCchhHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999997655788999999998886568899999999988889999999999999
Q ss_pred CCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCCcccccCCCCCCccccccccCCeEEEeCHH
Q 020528 173 GGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSE 252 (325)
Q Consensus 173 ~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~v~d~ 252 (325)
++.||+||+|+|+||+++|++.+||+.+|.+||++|||++++++..+.+....+.+++.+..|+.+.++++|+.+.|+|+
T Consensus 161 ~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~d~~~~V~d~ 240 (299)
T TIGR01136 161 DGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAESPVLSGGEPGPHKIQGIGAGFIPKILDLSLIDEVITVSDE 240 (299)
T ss_pred CCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCccCCCCCCCCCCccCChhhCCEEEEECHH
Confidence 66799999999999999999999999999999999999999888766665566777877767878888889999999999
Q ss_pred HHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhh
Q 020528 253 EAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVL 310 (325)
Q Consensus 253 e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~ 310 (325)
|+++++++|++++|+++||+||+++++++++.++...++++||+|+||+|.||+|+..
T Consensus 241 e~~~a~~~l~~~~gi~~e~ssaa~~a~~~~~~~~~~~~~~~vv~i~~d~g~ky~~~~~ 298 (299)
T TIGR01136 241 DAIETARRLAREEGILVGISSGAAVAAALKLAKRLENADKVIVAILPDTGERYLSTGL 298 (299)
T ss_pred HHHHHHHHHHHHhCceEcchHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccCccc
Confidence 9999999999999999999999999999998876434588999999999999999743
|
This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff. |
| >PRK11761 cysM cysteine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-65 Score=464.97 Aligned_cols=294 Identities=45% Similarity=0.741 Sum_probs=262.3
Q ss_pred hhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHH
Q 020528 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAF 87 (325)
Q Consensus 8 ~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 87 (325)
.+++|...+++|||+++++|+...|.+||+|+|++|||||||||++.+++.++.++|.+.+| .+||++|+||||+|+|+
T Consensus 2 ~~~~i~~~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g-~~vv~aSsGN~g~alA~ 80 (296)
T PRK11761 2 AYPTLEDTIGNTPLVKLQRLPPDRGNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPG-DTLIEATSGNTGIALAM 80 (296)
T ss_pred ccccHHHhcCCCceEeccccccCCCCEEEEEEcccCCCCCchhHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHH
Confidence 46778889999999999999877778999999999999999999999999999999988777 56999999999999999
Q ss_pred HHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHH
Q 020528 88 MAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPE 167 (325)
Q Consensus 88 ~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~E 167 (325)
+|+.+|++|+||||++++..|+++++.+||+|+.++...+++++.+.+++++++. +++|++||+|+.|+..||+++++|
T Consensus 81 ~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~n~~~~~~~~~t~~~E 159 (296)
T PRK11761 81 IAAIKGYRMKLIMPENMSQERRAAMRAYGAELILVPKEQGMEGARDLALQMQAEG-EGKVLDQFANPDNPLAHYETTGPE 159 (296)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhcc-CCEecCCCCChhhHHHHhhchHHH
Confidence 9999999999999999999999999999999999996546788888888888776 789999999999988899999999
Q ss_pred HHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCCcccccCCCCCCccccccccCCeEE
Q 020528 168 IWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETV 247 (325)
Q Consensus 168 i~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~ 247 (325)
|++|+.+.+|+||+|+|+||+++|++++||+.+|.+|||+|||++++++.+ +.++.....+..++...+|+++
T Consensus 160 i~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~~~~~i~g-------~~~~~~~~~~~~~~~~~vd~~v 232 (296)
T PRK11761 160 IWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEEGSSIPG-------IRRWPEEYLPKIFDASRVDRVL 232 (296)
T ss_pred HHHhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEecCCCCcCcC-------CCCCCCCcCCcccChhhCCEEE
Confidence 999996679999999999999999999999999999999999998876632 1122122234455567889999
Q ss_pred EeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhH
Q 020528 248 QISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFE 312 (325)
Q Consensus 248 ~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~ 312 (325)
.|+|+|+++++++|++++|+++||+||+++++++++++. .++++||+|+||+|.||+++..|+
T Consensus 233 ~V~d~e~~~a~~~l~~~~gi~ve~ssga~laaa~~~~~~--~~~~~vV~v~~d~g~ky~~~~~~~ 295 (296)
T PRK11761 233 DVSQQEAENTMRRLAREEGIFCGVSSGGAVAAALRIARE--NPNAVIVAIICDRGDRYLSTGVFP 295 (296)
T ss_pred EECHHHHHHHHHHHHHHhCceEchhHHHHHHHHHHHHHH--CCCCeEEEEECCCCcccCChhccc
Confidence 999999999999999999999999999999999998765 367899999999999999985553
|
|
| >PLN02356 phosphateglycerate kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-65 Score=475.58 Aligned_cols=316 Identities=33% Similarity=0.524 Sum_probs=270.4
Q ss_pred ccchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHH
Q 020528 5 KSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIG 84 (325)
Q Consensus 5 ~~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 84 (325)
+.+....+.+.+|+|||+++++|+...|.+||+|+|++|||||||||++.+++..+.++|.+.++ ..|+++||||||+|
T Consensus 40 ~~~~~~~~~~~ig~TPLv~~~~l~~~~g~~v~~KlE~~nPtGS~KdR~A~~~i~~a~~~g~~~~~-g~VveaSSGN~g~a 118 (423)
T PLN02356 40 KKKPRNGLIDAIGNTPLIRINSLSEATGCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFPG-GVVTEGSAGSTAIS 118 (423)
T ss_pred ccchhhhHHhhcCCCceEECcccccccCCEEEEEeccCCCCCCHHHHHHHHHHHHHHhCCccCCC-CEEEEeCCHHHHHH
Confidence 45567788899999999999999887788999999999999999999999999999999987676 45788999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC-----CChh-HHH---HHHHHHHHh--------------
Q 020528 85 LAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA-----RGMK-GAV---QKAEEIRDK-------------- 141 (325)
Q Consensus 85 lA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~-----~~~~-~~~---~~a~~~~~~-------------- 141 (325)
+|++|+.+|++|+||||+++++.|+++|+.|||+|+.+++. .++. .+. +.+.+++++
T Consensus 119 lA~~aa~~G~~~~ivvP~~~s~~K~~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~~~~~~ 198 (423)
T PLN02356 119 LATVAPAYGCKCHVVIPDDVAIEKSQILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIHLEK 198 (423)
T ss_pred HHHHHHHcCCcEEEEECCCCcHHHHHHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHHHHHHHhhhccccccccccc
Confidence 99999999999999999999999999999999999999641 1221 111 234444433
Q ss_pred ------------------CCCeEEeCCCCCCcchHhHHhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCc
Q 020528 142 ------------------TPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEI 203 (325)
Q Consensus 142 ------------------~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~ 203 (325)
.++++|++||+|+.|+..|+..+|+||++|++++||+||+|+|+||+++|++++||+.+|++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~n~~n~~ahg~gTg~EI~eQl~g~~D~vVv~vGtGGti~Gva~~lK~~~P~v 278 (423)
T PLN02356 199 TNGCISEEEKENSLFSSSCTGGFFADQFENLANFRAHYEGTGPEIWEQTQGNLDAFVAAAGTGGTLAGVSRFLQEKNPNI 278 (423)
T ss_pred cccccccccccccccccCCCCcEecCccCCcchHHHHHhhHHHHHHHhcCCCCCEEEeCCCchHHHHHHHHHHHHhCCCC
Confidence 14678999999999977776667999999997689999999999999999999999999999
Q ss_pred EEEEEecCCCcccc-------------CCC----CCCcccccCCCCCCccccccccCCeEEEeCHHHHHHHHHHHHHHcC
Q 020528 204 KLYGVEPVESAVLS-------------GGK----PGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEG 266 (325)
Q Consensus 204 ~vigV~~~~~~~~~-------------~~~----~~~~~~~gl~~~~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~g 266 (325)
||++|||.+++.+. .|. +.++.++|++.+.+|..++...+|+++.|+|+|++++++++++++|
T Consensus 279 kVigVep~~s~~~~~~~~~~~~~~s~~~G~~~~~~~~tia~Gig~~~~~~~~~~~~vD~~v~Vsd~ea~~a~r~L~~~~G 358 (423)
T PLN02356 279 KCFLIDPPGSGLFNKVTRGVMYTREEAEGRRLKNPFDTITEGIGINRLTQNFLMAKLDGAFRGTDKEAVEMSRYLLKNDG 358 (423)
T ss_pred EEEEEecCCCccccccccchhhhhhhhcCCccCCCCCeecCcCcCCCCChhHhHHhCCcEEEECHHHHHHHHHHHHHHCC
Confidence 99999999986332 122 2256789999888888888889999999999999999999999999
Q ss_pred CeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhHHHHHHhcCCCC
Q 020528 267 LLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFESVKKEAESMVF 323 (325)
Q Consensus 267 i~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~~~~~~~~~~~~ 323 (325)
+++||+||+++++++++++.. .++++||+|+||+|.||+++++.++|+.+ +++.+
T Consensus 359 l~vg~Ssaa~laaa~~la~~~-~~g~~VV~Il~d~G~kyl~~~~~~~w~~~-~~~~~ 413 (423)
T PLN02356 359 LFVGSSSAMNCVGAVRVAQSL-GPGHTIVTILCDSGMRHLSKFHDPQYLSQ-HGLTP 413 (423)
T ss_pred eeEeECHHHHHHHHHHHHHHh-CCCCeEEEEECCCCcchhhhhcCHHHHHh-cCCCC
Confidence 999999999999999987652 36789999999999999999777776664 55543
|
|
| >PRK10717 cysteine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-64 Score=468.62 Aligned_cols=310 Identities=44% Similarity=0.700 Sum_probs=270.2
Q ss_pred hhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHH
Q 020528 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAF 87 (325)
Q Consensus 8 ~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 87 (325)
.++++.+.+++|||+++++|+...|.+||+|+|++|||||||||++.+++..++++|.+.+| .+||++|+||||+|+|+
T Consensus 3 ~~~~~~~~~g~TPL~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~v~~a~~~g~~~~g-~~vv~aSsGN~g~alA~ 81 (330)
T PRK10717 3 IFEDVSDTIGNTPLIRLNRASEATGCEILGKAEFLNPGGSVKDRAALNIIWDAEKRGLLKPG-GTIVEGTAGNTGIGLAL 81 (330)
T ss_pred hhhhHHHHhCCCceEEccccCCCCCCeEEEEeeccCCCCCchHHHHHHHHHHHHHcCCCCCC-CEEEEeCCcHHHHHHHH
Confidence 46788999999999999999988888999999999999999999999999999999988776 56999999999999999
Q ss_pred HHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCC------ChhHHHHHHHHHHHhC-CCeEEeCCCCCCcchHhH
Q 020528 88 MAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPAR------GMKGAVQKAEEIRDKT-PNSYVLQQFENPANPKIH 160 (325)
Q Consensus 88 ~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~------~~~~~~~~a~~~~~~~-~~~~~~~~~~n~~~~~~g 160 (325)
+|+++|++|+||||+.+++.|+++++.+||+|+.+++.. ..+.+.+.+.++.++. .+++|++||+||.++..|
T Consensus 82 ~a~~~G~~~~vv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g 161 (330)
T PRK10717 82 VAAARGYKTVIVMPETQSQEKKDLLRALGAELVLVPAAPYANPNNYVKGAGRLAEELVASEPNGAIWANQFDNPANREAH 161 (330)
T ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCcccccccchHHHHHHHHHHHHhhCCCCeEecCCCCChhhHHHH
Confidence 999999999999999999999999999999999998631 1122334444444443 278999999999887789
Q ss_pred HhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc---CCC---CCCcccccCCCCCC
Q 020528 161 YETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS---GGK---PGPHKIQGIGAGFI 234 (325)
Q Consensus 161 ~~t~~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~---~~~---~~~~~~~gl~~~~~ 234 (325)
|.++++||++|++..+|+||+|+|+||+++|++++||+.+|++|||+|||++++.+. .+. ...+.+++++.+..
T Consensus 162 ~~t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~Vep~~~~~~~~~~~g~~~~~~~~~~~gl~~~~~ 241 (330)
T PRK10717 162 YETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTGSALYSYYKTGELKAEGSSITEGIGQGRI 241 (330)
T ss_pred HHhHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEcCCCCccccccccCCcCCCCCcccCcCCCCcC
Confidence 999999999999767999999999999999999999999999999999999985432 122 23467788887776
Q ss_pred ccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhHHH
Q 020528 235 PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFESV 314 (325)
Q Consensus 235 ~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~~~ 314 (325)
++.+....+|+++.|+|+|++++++++++++|+++||+||+++++++++++.. .++++||+|+||+|+||+++++.|+|
T Consensus 242 ~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~vepssga~laa~~~l~~~~-~~~~~Vv~v~~g~g~ky~~~~~~d~~ 320 (330)
T PRK10717 242 TANLEGAPIDDAIRIPDEEALSTAYRLLEEEGLCLGGSSGINVAAALRLAREL-GPGHTIVTILCDSGERYQSKLFNPDF 320 (330)
T ss_pred CcccChhhCCEEEEECHHHHHHHHHHHHHhcCCeEeecHHHHHHHHHHHHHhc-CCCCEEEEEECCCchhhcccccCHHH
Confidence 77666667899999999999999999999999999999999999999987653 46789999999999999999888888
Q ss_pred HHHhc
Q 020528 315 KKEAE 319 (325)
Q Consensus 315 ~~~~~ 319 (325)
..+..
T Consensus 321 ~~~~~ 325 (330)
T PRK10717 321 LREKG 325 (330)
T ss_pred HHhcC
Confidence 87653
|
|
| >TIGR01139 cysK cysteine synthase A | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-64 Score=461.05 Aligned_cols=294 Identities=65% Similarity=1.048 Sum_probs=266.5
Q ss_pred hhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHc
Q 020528 13 TELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAK 92 (325)
Q Consensus 13 ~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~ 92 (325)
...+++|||+++++ ....+.+||+|+|++|||||||||++.+++..+.++|.+.+| .+|+++|+||||+|+|++|+++
T Consensus 2 ~~~~g~TPl~~~~~-~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~~ 79 (298)
T TIGR01139 2 SELIGNTPLVRLNR-IEGCNANVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPG-KTIVEPTSGNTGIALAMVAAAR 79 (298)
T ss_pred ccccCCCceEEccc-cCCCCceEEEEEcccCCCCcchHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChhHHHHHHHHHHc
Confidence 45789999999998 445678999999999999999999999999999999987776 5689999999999999999999
Q ss_pred CCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCC-eEEeCCCCCCcchHhHHhchHHHHHhh
Q 020528 93 GYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPN-SYVLQQFENPANPKIHYETTGPEIWKG 171 (325)
Q Consensus 93 g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~n~~~~~~g~~t~~~Ei~~q 171 (325)
|++|+||+|+++++.|+++++.+||+|+.++++.+++++.+.+++++++.++ +++++||+|+.|++.||+++++||++|
T Consensus 80 Gl~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q 159 (298)
T TIGR01139 80 GYKLILTMPETMSIERRKLLKAYGAELVLTPGAEGMKGAIAKAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWRD 159 (298)
T ss_pred CCeEEEEeCCccCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCcEEcccccCCcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999754456788889988887743 568999999998889999999999999
Q ss_pred hCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCCcccccCCCCCCccccccccCCeEEEeCH
Q 020528 172 TGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISS 251 (325)
Q Consensus 172 l~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~v~d 251 (325)
+++.||+||+|+|+||+++|++++|++.+|++|||+|||.+++.+...++..+.+++++.+..|..+++..+|+++.|+|
T Consensus 160 ~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~V~d 239 (298)
T TIGR01139 160 TDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAESPVLSGGKPGPHKIQGIGAGFIPKNLNRSVIDEVITVSD 239 (298)
T ss_pred hCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEEecCCCcccCCCCCCCCCCCCCCCCCCCCccChhhCCEEEEECH
Confidence 96679999999999999999999999999999999999999988876666667778888777777777888999999999
Q ss_pred HHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchh
Q 020528 252 EEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSV 309 (325)
Q Consensus 252 ~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~ 309 (325)
+|+++++++|++++|+++||+||+++++++++.+.. .++++||+++||+|.||+|+.
T Consensus 240 ~e~~~a~~~l~~~~gi~~~pssga~laa~~~~~~~~-~~~~~vv~v~~d~G~ky~~~~ 296 (298)
T TIGR01139 240 EEAIETARRLAAEEGILVGISSGAAVAAALKLAKRP-EPDKLIVVILPSTGERYLSTP 296 (298)
T ss_pred HHHHHHHHHHHHhcCceEcccHHHHHHHHHHHHHhc-CCCCEEEEEECCCCccccCcc
Confidence 999999999999999999999999999999987753 267899999999999999974
|
This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate. |
| >KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-66 Score=454.00 Aligned_cols=314 Identities=68% Similarity=1.098 Sum_probs=296.0
Q ss_pred hhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHH
Q 020528 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAF 87 (325)
Q Consensus 8 ~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 87 (325)
....+.+.+|+|||++++++..++.++||+|+|.+||+||.|||.++.|+..|+++|.+.||+++|+++||||+|.++|+
T Consensus 42 ~~~~~~~liG~TPlv~ln~i~~g~~~~i~~K~E~~~p~~SvKdRia~sMi~~Ae~~G~i~pg~stliEpTSGNtGigLA~ 121 (362)
T KOG1252|consen 42 ILWDVRDLIGNTPLVKLNKIAGGCVARIAAKLEYMNPGGSVKDRIAWSMIEDAEKKGLITPGKSTLIEPTSGNTGIGLAY 121 (362)
T ss_pred hhhhHHHHhCCCceEEeccccCCccceEEEEeeecCCcccHHHHHHHHHHHHHHHcCCccCCceEEEecCCCchHHHHHH
Confidence 55778899999999999999888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhH---HHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhch
Q 020528 88 MAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKG---AVQKAEEIRDKTPNSYVLQQFENPANPKIHYETT 164 (325)
Q Consensus 88 ~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~ 164 (325)
+|+..|++|+++||+.++.+|+.+|+++||+|+.++....++. +...+.++..+.++.+.++||.||.|+..||.++
T Consensus 122 ~~a~~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~a~~~~~~e~ai~~a~~l~~~~pna~~l~Qf~np~Np~~hy~tt 201 (362)
T KOG1252|consen 122 MAALRGYKCIITMPEKMSKEKRILLRALGAEIILTPPAAGMKGPESAIGKAEELLNKTPNAYILDQFHNPGNPLAHYETT 201 (362)
T ss_pred HHHHcCceEEEEechhhhHHHHHHHHHcCCEEEecChHHccCChHHHHHHHHHHHHhCCChHHHHHhcCCCCcccccccc
Confidence 9999999999999999999999999999999999997655665 8889999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCC--cccccCCCCCCcccccccc
Q 020528 165 GPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGP--HKIQGIGAGFIPGVLDVNL 242 (325)
Q Consensus 165 ~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~~~--~~~~gl~~~~~~~~~~~~~ 242 (325)
+.||++|+.+++|.+|.++|||||++|+.+++|+.+|+++|++|+|..|..+..+.+.+ +.++||+.++.|..++.+.
T Consensus 202 g~EI~~q~~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~~~~~~~g~~~~~I~GIGyg~~p~~ld~~~ 281 (362)
T KOG1252|consen 202 GPEIWRQLDGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIVLSGGKPGPTFHKIQGIGYGFIPTTLDTKL 281 (362)
T ss_pred cHHHHHHhcCCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCcceeccCCCCCCCccceeccccCcCccccchHH
Confidence 99999999999999999999999999999999999999999999999998888777777 8899999999999999999
Q ss_pred CCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhHHHHHHhcCC
Q 020528 243 LDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFESVKKEAESM 321 (325)
Q Consensus 243 ~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~~~~~~~~~~ 321 (325)
+|+.+.+.++|++.++++++.+||++++.|||++++++++++++.+..++-+|++++|+|++|+++++||+|.++..++
T Consensus 282 vd~~~~~~~d~A~~~Ar~La~eeGll~G~SSGan~~aAl~~a~~~en~~kliV~~~pd~ge~Y~st~L~d~w~~e~~~~ 360 (362)
T KOG1252|consen 282 VDEVLKVSSDEAIEMARRLALEEGLLVGISSGANVAAALKLAKRPENAGKLIVVTFPDFGERYLSTFLFDEWREEAEKL 360 (362)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhhCeeecccchHHHHHHHHHHhccccCCcEEEEECCCcchhhhhhhhHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999998877666666666599999999999999999887664
|
|
| >TIGR01138 cysM cysteine synthase B | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-64 Score=455.23 Aligned_cols=288 Identities=43% Similarity=0.756 Sum_probs=257.8
Q ss_pred HhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHHH
Q 020528 12 VTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAA 91 (325)
Q Consensus 12 i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~ 91 (325)
|...+|+|||+++++|+...|.+||+|+|++|||||||||++.+++..+.++|.+.++ ..||++|+||||+|+|++|+.
T Consensus 2 i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~ 80 (290)
T TIGR01138 2 IEQTVGNTPLVRLQRMGPENGSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPG-DVLIEATSGNTGIALAMIAAL 80 (290)
T ss_pred hHHhCCCCceEEccccccCCCCeEEEEEccCCCCccHHHHHHHHHHHHHHHcCCCCCC-CEEEEECCChHHHHHHHHHHH
Confidence 5667999999999999877778999999999999999999999999999999988777 569999999999999999999
Q ss_pred cCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHHHhh
Q 020528 92 KGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKG 171 (325)
Q Consensus 92 ~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q 171 (325)
+|++|+||||++.+..|+++++.+||+|+.++...+++++.+.+++++++. +.+|++||+|+.|+..||+++++||++|
T Consensus 81 ~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~~~~~~~~~~~t~~~Ei~~q 159 (290)
T TIGR01138 81 KGYRMKLLMPDNMSQERKAAMRAYGAELILVTKEEGMEGARDLALELANRG-EGKLLDQFNNPDNPYAHYTSTGPEIWQQ 159 (290)
T ss_pred cCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC-CCCCCCccCCcccHHHHhHhHHHHHHHH
Confidence 999999999999999999999999999999987556888889999998887 4468899999999877899999999999
Q ss_pred hCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCCcccccCCCCCCccccccccCCeEEEeCH
Q 020528 172 TGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISS 251 (325)
Q Consensus 172 l~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~v~d 251 (325)
+.+.+|+||+|+|+||+++|++++||+.+|++|||+|||.+++.+.+ +.+++.+..|..++...+|+++.|+|
T Consensus 160 ~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep~~~~~~~g-------~~~~~~~~~~~~~~~~~~d~~v~V~d 232 (290)
T TIGR01138 160 TGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEEGSSIPG-------IRRWPTEYLPGIFDASLVDRVLDIHQ 232 (290)
T ss_pred cCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccC-------CCCCCCCcCCcccChhhCcEEEEECH
Confidence 97689999999999999999999999999999999999999866532 12233333444556677899999999
Q ss_pred HHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhh
Q 020528 252 EEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVL 310 (325)
Q Consensus 252 ~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~ 310 (325)
+|+++++++|++++|+++||+||++++++++++++ .++++||+|+||+|.||+|+.+
T Consensus 233 ~e~~~a~~~l~~~~gi~~g~ssga~laa~~~~~~~--~~~~~vv~v~~d~g~ky~~~~~ 289 (290)
T TIGR01138 233 RDAENTMRELAVREGIFCGVSSGGAVAAALRLARE--LPDAVVVAIICDRGDRYLSTGV 289 (290)
T ss_pred HHHHHHHHHHHHHhCceEcHhHHHHHHHHHHHHHH--CCCCeEEEEECCCCccccCccc
Confidence 99999999999999999999999999999998765 3668999999999999999744
|
Alternate name: O-acetylserine (thiol)-lyase |
| >TIGR01137 cysta_beta cystathionine beta-synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-62 Score=474.18 Aligned_cols=307 Identities=43% Similarity=0.711 Sum_probs=270.9
Q ss_pred HHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHH
Q 020528 10 KDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMA 89 (325)
Q Consensus 10 ~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a 89 (325)
+.+...+++|||+++++|+...+.+||+|+|++|||||||+|+|.+++.++.++|++.+| ++||++|+||||+|+|++|
T Consensus 3 ~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g-~~vv~~ssGN~g~alA~~a 81 (454)
T TIGR01137 3 DNIIDLIGNTPLVRLNKVSKGIKCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLKPG-DTIIEPTSGNTGIGLALVA 81 (454)
T ss_pred cchHHhcCCCceEEccccCCCCCceEEEEEhhcCCCcchHHHHHHHHHHHHHHcCCCCCC-CEEEEeCCcHHHHHHHHHH
Confidence 456778999999999999987778999999999999999999999999999999998887 6699999999999999999
Q ss_pred HHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChh---HHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHH
Q 020528 90 AAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMK---GAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGP 166 (325)
Q Consensus 90 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~ 166 (325)
+.+|++|+||||++++..|+.+++.+||+|+.+++...++ ...+.+.+++++.++.+|++||+|+.|+..||.++++
T Consensus 82 ~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 161 (454)
T TIGR01137 82 AIKGYKCIIVLPEKMSNEKVDVLKALGAEIVRTPTAAAFDSPESHIGVAKRLVREIPGAHILDQYNNPSNPLAHYDGTGP 161 (454)
T ss_pred HHcCCeEEEEeCCCcCHHHHHHHHHCCCEEEEcCCccCCCchHHHHHHHHHHHHhCCCcEecccCCChhhHHHHHHhhHH
Confidence 9999999999999999999999999999999998642233 2356677777775567889999999998889999999
Q ss_pred HHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCC------CCCcccccCCCCCCcccccc
Q 020528 167 EIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGK------PGPHKIQGIGAGFIPGVLDV 240 (325)
Q Consensus 167 Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~------~~~~~~~gl~~~~~~~~~~~ 240 (325)
||++|+++.||+||+|+|+||+++|+++++|+.+|.+||++|||++++.. .+. ..++.++|++.+..|..+..
T Consensus 162 Ei~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 240 (454)
T TIGR01137 162 EILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADPEGSILA-QPENLNKTGRTPYKVEGIGYDFIPTVLDR 240 (454)
T ss_pred HHHHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEEecCCCccc-CCCcccCCCCCCccCCCCCCCCCCCcCCc
Confidence 99999976899999999999999999999999999999999999998633 221 12345678876666777778
Q ss_pred ccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhHHHHHHh
Q 020528 241 NLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFESVKKEA 318 (325)
Q Consensus 241 ~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~~~~~~~ 318 (325)
+.+|+.+.|+|+|++++++++++++|+++||+||++++++++++++...++++||+++||+|.||++++++++|..+.
T Consensus 241 ~~~d~~~~V~~~e~~~a~~~l~~~~gi~~~~ssg~~~aa~~~~~~~~~~~~~~vv~~~~d~g~~y~~~~~~~~w~~~~ 318 (454)
T TIGR01137 241 KVVDEWIKTDDKESFKMARRLIKEEGLLVGGSSGSAVVAALKAAEDELTEDQVIVVLLPDSIRNYMTKFLNDEWMKDN 318 (454)
T ss_pred hhCCeEEEECHHHHHHHHHHHHHHhCccCcHHHHHHHHHHHHHHHhhcCCCCEEEEEECCCCccccCcccChHHHHhc
Confidence 889999999999999999999999999999999999999999877422467899999999999999998888987764
|
Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven. |
| >cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-62 Score=444.52 Aligned_cols=289 Identities=62% Similarity=0.994 Sum_probs=261.3
Q ss_pred CCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeE
Q 020528 17 GKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRL 96 (325)
Q Consensus 17 ~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~ 96 (325)
|+|||+++++|+...|.+||+|+|++|||||||+|++.+++..+.++|++.++ .+|+++|+||||+|+|++|+++|++|
T Consensus 1 g~TPl~~~~~l~~~~g~~i~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~~~~~-~~vv~~SsGN~g~alA~~a~~~G~~~ 79 (291)
T cd01561 1 GNTPLVRLNRLSPGTGAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPG-TTIIEPTSGNTGIGLAMVAAAKGYRF 79 (291)
T ss_pred CCCCEEEccccCCCCCCeEEEEecccCCCCcchHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHHHHHHcCCeE
Confidence 68999999999987888999999999999999999999999999999986655 56999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHHHHcCCEEEEeCCCC--ChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHHHhhhCC
Q 020528 97 IITMPASMSLERRMVLLAFGAELVLTDPAR--GMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGG 174 (325)
Q Consensus 97 ~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~ql~~ 174 (325)
+||||.+++..|+++++.+||+|+.++... +.+++.+.+++++++.++++|++||+||.++..|++++++||.+|+.+
T Consensus 80 ~i~vp~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~g~~~t~~~Ei~~ql~~ 159 (291)
T cd01561 80 IIVMPETMSEEKRKLLRALGAEVILTPEAEADGMKGAIAKARELAAETPNAFWLNQFENPANPEAHYETTAPEIWEQLDG 159 (291)
T ss_pred EEEECCCCCHHHHHHHHHcCCEEEEeCCCCcCCHHHHHHHHHHHHhhCCCcEEecCCCCchHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999743 347888888888877657999999999998544455999999999966
Q ss_pred CCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCCcccccCCCCCCccccccccCCeEEEeCHHHH
Q 020528 175 KIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEA 254 (325)
Q Consensus 175 ~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~v~d~e~ 254 (325)
.||+||+|+|+||+++|++.+|+...|.+|||+|||++++++.......+.+++|+.+..+..+...++|+++.|+|+|+
T Consensus 160 ~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~V~d~e~ 239 (291)
T cd01561 160 KVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVGSVLFSGGPPGPHKIEGIGAGFIPENLDRSLIDEVVRVSDEEA 239 (291)
T ss_pred CCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEecCCCcccCCCCCCCCcCCCCCCCCCCCccCchhCceeEEECHHHH
Confidence 89999999999999999999999999999999999999988854445566778988876677777778999999999999
Q ss_pred HHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcc
Q 020528 255 IETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLS 307 (325)
Q Consensus 255 ~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~ 307 (325)
+++++.+++++|+++||++|++++++++++++.. ++++||+|+||+|.||+|
T Consensus 240 ~~a~~~l~~~~gi~~epssa~a~a~~~~~~~~~~-~~~~vv~v~~~~g~ky~~ 291 (291)
T cd01561 240 FAMARRLAREEGLLVGGSSGAAVAAALKLAKRLG-PGKTIVTILPDSGERYLS 291 (291)
T ss_pred HHHHHHHHHHhCeeEcccHHHHHHHHHHHHHhcC-CCCeEEEEECCCccccCC
Confidence 9999999999999999999999999999877643 678999999999999986
|
CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine. |
| >COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-61 Score=435.81 Aligned_cols=301 Identities=24% Similarity=0.310 Sum_probs=265.5
Q ss_pred cchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHH
Q 020528 6 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGL 85 (325)
Q Consensus 6 ~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~al 85 (325)
....+++...+.+|||.+++.|++.+|++||+|+|++||+||||.|||++.+..+.+++.. ..+||++|+||||+++
T Consensus 13 ~~A~~ri~~~~~~TPL~~s~~Ls~~~g~~v~lK~E~lQ~~gSFK~RGA~n~i~~Ls~e~~~---~~gViaaSaGNHaQGv 89 (347)
T COG1171 13 LAAAARLKGVVNPTPLQRSPSLSERLGAEIYLKRENLQPVGSFKIRGAYNKLSSLSEEEER---AAGVIAASAGNHAQGV 89 (347)
T ss_pred HHHHHHHhCcccCCCcccchhhHHhhCceEEEeeccCcccccchhhhHHHHHHhcChhhhh---cCceEEecCCcHHHHH
Confidence 3456888899999999999999988999999999999999999999999999987644321 2579999999999999
Q ss_pred HHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchH
Q 020528 86 AFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTG 165 (325)
Q Consensus 86 A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~ 165 (325)
|++|+++|++++||||.++|..|++.++.|||+|+.++. +|+++.+.++++++++ ++.+++||++|+. ++||+|++
T Consensus 90 A~aa~~lGi~a~IvMP~~tp~~Kv~a~r~~GaeVil~g~--~~dda~~~a~~~a~~~-G~~~i~pfD~p~v-iAGQGTi~ 165 (347)
T COG1171 90 AYAAKRLGIKATIVMPETTPKIKVDATRGYGAEVILHGD--NFDDAYAAAEELAEEE-GLTFVPPFDDPDV-IAGQGTIA 165 (347)
T ss_pred HHHHHHhCCCEEEEecCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHHc-CCEEeCCCCCcce-eecccHHH
Confidence 999999999999999999999999999999999999995 7999999999999998 8999999999997 89999999
Q ss_pred HHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCC-C-----CCcccccCCCCC--
Q 020528 166 PEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGK-P-----GPHKIQGIGAGF-- 233 (325)
Q Consensus 166 ~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~-~-----~~~~~~gl~~~~-- 233 (325)
+||++|+...||+||||+|+||+++|++.++|...|.+|||||||+++++|. .|. + ..++++|+++..
T Consensus 166 lEileq~~~~~d~v~vpvGGGGLisGia~~~k~~~p~~~vIGVEp~~a~~~~~Sl~~G~~~~~~~~~~tiaDG~av~~~g 245 (347)
T COG1171 166 LEILEQLPDLPDAVFVPVGGGGLISGIATALKALSPEIKVIGVEPEGAPSMYASLKAGKIVVVLPDVGTIADGLAVKRPG 245 (347)
T ss_pred HHHHHhccccCCEEEEecCccHHHHHHHHHHHHhCCCCeEEEEeeCCChHHHHHHHcCCceeecCCCCccccccccCCCC
Confidence 9999999555799999999999999999999999999999999999999874 342 1 345668887543
Q ss_pred -CccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhH
Q 020528 234 -IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFE 312 (325)
Q Consensus 234 -~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~ 312 (325)
.++.+.++++|+++.|+|+|+.++|+++++++++++||++|+++|++++...+. .+++++++|+ +|||.++++ +.
T Consensus 246 ~~tf~i~~~~vd~~v~V~e~ei~~am~~l~~~~~iI~EpaGAlalAal~~~~~~~-~~g~~v~~il-SGgN~d~~~--~~ 321 (347)
T COG1171 246 DLTFEILRELVDDIVLVDEDEICAAMRDLFERTKIIAEPAGALALAALLAGKIEP-LQGKTVVVIL-SGGNIDFER--LA 321 (347)
T ss_pred HHHHHHHHHcCCcEEEECHHHHHHHHHHHHhcCCeeccccHHHHHHHHHhhhhhh-cCCCeEEEEe-cCCCCCHHH--HH
Confidence 567788899999999999999999999999999999999999999999876653 4677788888 567766554 55
Q ss_pred HHHHH
Q 020528 313 SVKKE 317 (325)
Q Consensus 313 ~~~~~ 317 (325)
+.++.
T Consensus 322 ~v~~~ 326 (347)
T COG1171 322 EVLER 326 (347)
T ss_pred HHHhc
Confidence 55444
|
|
| >PRK12483 threonine dehydratase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-60 Score=452.98 Aligned_cols=297 Identities=24% Similarity=0.304 Sum_probs=257.9
Q ss_pred HHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHH
Q 020528 10 KDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMA 89 (325)
Q Consensus 10 ~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a 89 (325)
.+|...+++|||+++++|++.+|++||+|+|++|||||||+|+|.+.+..+.+... .++||++|+||||+++|++|
T Consensus 29 ~~i~~~v~~TPL~~~~~Ls~~~g~~IylK~E~lqptGSfK~RGA~n~i~~l~~~~~----~~GVV~aSaGNha~gvA~aA 104 (521)
T PRK12483 29 ARVYDVARETPLQRAPNLSARLGNQVLLKREDLQPVFSFKIRGAYNKMARLPAEQL----ARGVITASAGNHAQGVALAA 104 (521)
T ss_pred HHHhhhcCCCCeeEchhhhHhhCCEEEEEEcCCCCCCchHHHHHHHHHHHhHHHHh----cCcEEEECCCHHHHHHHHHH
Confidence 46778899999999999998888999999999999999999999999987764332 25699999999999999999
Q ss_pred HHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHHH
Q 020528 90 AAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIW 169 (325)
Q Consensus 90 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~ 169 (325)
+.+|++|+||||.+++..|+.+++.|||+|+.++. +++++.+.+++++++. +++|++||+|+.+ ++||+|+++||+
T Consensus 105 ~~lGi~~~IvmP~~tp~~Kv~~~r~~GAeVil~g~--~~d~a~~~A~~la~e~-g~~~v~pfdd~~v-iaGqgTig~EI~ 180 (521)
T PRK12483 105 ARLGVKAVIVMPRTTPQLKVDGVRAHGGEVVLHGE--SFPDALAHALKLAEEE-GLTFVPPFDDPDV-IAGQGTVAMEIL 180 (521)
T ss_pred HHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCeeeCCCCChHH-HHHHHHHHHHHH
Confidence 99999999999999999999999999999999985 6899999999999887 7899999999987 789999999999
Q ss_pred hhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----CCcccccCCCCC---Cccc
Q 020528 170 KGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKP-----GPHKIQGIGAGF---IPGV 237 (325)
Q Consensus 170 ~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~-----~~~~~~gl~~~~---~~~~ 237 (325)
+|+++.||+||+|+|+||+++|++.++|...|++|||||||++++++. .+++ ..+.++|++... .++.
T Consensus 181 eQ~~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGVep~~a~~~~~sl~~g~~~~~~~~~t~adGiav~~~g~~~~~ 260 (521)
T PRK12483 181 RQHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDDSNCLQAALAAGERVVLGQVGLFADGVAVAQIGEHTFE 260 (521)
T ss_pred HHhCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEEeCCCchhhHHHhcCCcccCCCCCceeceeccCCCCHHHHH
Confidence 999657999999999999999999999999999999999999998874 2332 234567776543 2344
Q ss_pred cccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhHHHHHH
Q 020528 238 LDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFESVKKE 317 (325)
Q Consensus 238 ~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~~~~~~ 317 (325)
+.++++|+++.|+|+|+.++++++++++|+++||++|+++|+++++.++...++++||+|+| ||+.++++ +..+.+.
T Consensus 261 ~~~~~vd~vv~Vse~ei~~ai~~l~~~~~i~vEpagAaalAal~~~~~~~~~~g~~VV~Ils-GgNid~~~--l~~i~~r 337 (521)
T PRK12483 261 LCRHYVDEVVTVSTDELCAAIKDIYDDTRSITEPAGALAVAGIKKYAEREGIEGQTLVAIDS-GANVNFDR--LRHVAER 337 (521)
T ss_pred HHHHhCCEEEEECHHHHHHHHHHHHHhCCcEEeHHHHHHHHHHHHHHHhcCCCCCEEEEEeC-CCCCCHHH--HHHHHHH
Confidence 55678999999999999999999999999999999999999999987655456889999985 56655553 5555443
|
|
| >PLN02970 serine racemase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-60 Score=436.41 Aligned_cols=294 Identities=19% Similarity=0.249 Sum_probs=250.9
Q ss_pred ccchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHH
Q 020528 5 KSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIG 84 (325)
Q Consensus 5 ~~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 84 (325)
.....+++...+++|||+++++|++..|.+||+|+|++|||||||||++.+++.++.+++. .++||++|+||||+|
T Consensus 14 i~~a~~~i~~~i~~TPL~~~~~l~~~~g~~i~~K~E~~nptGSfKdRga~~~i~~~~~~~~----~~~vv~aSsGN~g~a 89 (328)
T PLN02970 14 IREARKRIAPFIHRTPVLTSSSLDALAGRSLFFKCECFQKGGAFKFRGACNAIFSLSDDQA----EKGVVTHSSGNHAAA 89 (328)
T ss_pred HHHHHHHHhCcCCCCCeeechhhHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHHhhHhhc----CCeEEEECCcHHHHH
Confidence 3456788889999999999999987778899999999999999999999999999876554 257999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhch
Q 020528 85 LAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETT 164 (325)
Q Consensus 85 lA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~ 164 (325)
+|++|+.+|++|+||||+++++.|+++|+.+||+|+.++. +++.+.+.+++++++. +++|++||+|+.+ +.||+++
T Consensus 90 lA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~la~~~-g~~~~~~~~n~~~-~~g~~t~ 165 (328)
T PLN02970 90 LALAAKLRGIPAYIVVPKNAPACKVDAVIRYGGIITWCEP--TVESREAVAARVQQET-GAVLIHPYNDGRV-ISGQGTI 165 (328)
T ss_pred HHHHHHHcCCCEEEEECCCCCHHHHHHHHhcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcch-hhehHHH
Confidence 9999999999999999999999999999999999999995 5788888899988775 7899999999987 6899999
Q ss_pred HHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----CCcccccCCCCC--
Q 020528 165 GPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKP-----GPHKIQGIGAGF-- 233 (325)
Q Consensus 165 ~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~-----~~~~~~gl~~~~-- 233 (325)
++||++|+. .||+||+|+|+||+++|++++||+.+|++|||+|||.+++++. .+.+ ..+..++++.+.
T Consensus 166 g~Ei~~ql~-~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~Vep~~~~~~~~s~~~g~~~~~~~~~tia~gl~~~~~~ 244 (328)
T PLN02970 166 ALEFLEQVP-ELDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEPKGADDAAQSKAAGEIITLPVTNTIADGLRASLGD 244 (328)
T ss_pred HHHHHHhcc-CCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEEEECCCcHHHHHHHcCCceeCCCCCCccccccCCcCH
Confidence 999999994 7999999999999999999999999999999999999998763 2321 133445554431
Q ss_pred CccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhc-CC-CC-CCEEEEEeCCCCCCCcch
Q 020528 234 IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKR-PE-NA-GKLIVVVFPSFGERYLSS 308 (325)
Q Consensus 234 ~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~-~~-~~-~~~vv~i~t~~g~~~~~~ 308 (325)
.++...++.+|+++.|+|+|+++++++|++++|+++||++|++++++++...+ +. .+ +++||+++|+ |+.++++
T Consensus 245 ~~~~~~~~~~d~~v~V~d~e~~~a~~~la~~~gi~ve~s~aa~laaa~~~~~~~~~~~~~~~~vv~v~~G-gn~~~~~ 321 (328)
T PLN02970 245 LTWPVVRDLVDDVITVDDKEIIEAMKLCYERLKVVVEPSGAIGLAAALSDSFRSNPAWKGCKNVGIVLSG-GNVDLGV 321 (328)
T ss_pred HHHHHHHhhCCEEEEECHHHHHHHHHHHHHhcCcEEeHHHHHHHHHHHhCcccccccccCCCeEEEEECC-CCCCHHH
Confidence 12334467789999999999999999999999999999999999997764322 21 23 4789999965 7876665
|
|
| >PRK08638 threonine dehydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-59 Score=433.22 Aligned_cols=299 Identities=24% Similarity=0.316 Sum_probs=254.5
Q ss_pred ccchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHH
Q 020528 5 KSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIG 84 (325)
Q Consensus 5 ~~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 84 (325)
...+++++...+++|||+++++|++..+++||+|+|++|||||||||++.+++.++.+... ..+|+++|+||||.|
T Consensus 14 i~~a~~~i~~~i~~TPlv~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~~~~~~~----~~~vv~~SsGN~g~a 89 (333)
T PRK08638 14 IIEAKQRLAGRIRKTPLPRSNYLSERCKGEIFLKLENMQRTGSFKIRGAFNKLSSLTDAEK----RKGVVACSAGNHAQG 89 (333)
T ss_pred HHHHHHHhhCcCcCCCceechhhHHhhCCeEEEEeccCCccCCcHHHHHHHHHHhccHHhc----CCeEEEeCCcHHHHH
Confidence 4567889999999999999999987777899999999999999999999999998765332 157999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhch
Q 020528 85 LAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETT 164 (325)
Q Consensus 85 lA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~ 164 (325)
+|++|+.+|++|+||||++.+..|+++++.+||+|+.+++ +++++.+.+++++++. +++|++||+|+.+ ++||+++
T Consensus 90 lA~~aa~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~a~~~-g~~~~~~~~~~~~-~~g~~t~ 165 (333)
T PRK08638 90 VALSCALLGIDGKVVMPKGAPKSKVAATCGYGAEVVLHGD--NFNDTIAKVEEIVEEE-GRTFIPPYDDPKV-IAGQGTI 165 (333)
T ss_pred HHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCEEEEECc--CHHHHHHHHHHHHHhc-CCEEcCcCCCcch-hccccHH
Confidence 9999999999999999999999999999999999999984 6889999999998887 7899999999987 7899999
Q ss_pred HHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCCCC-----cccccCCCCCCc
Q 020528 165 GPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKPGP-----HKIQGIGAGFIP 235 (325)
Q Consensus 165 ~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~~~-----~~~~gl~~~~~~ 235 (325)
++||++|+ +++|+||+|+|+||+++|++++||+.+|++|||+|||+++++|. .+++.. +..++++.. .|
T Consensus 166 a~Ei~~q~-~~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigVep~g~~~~~~s~~~g~~~~~~~~~ti~~gl~~~-~p 243 (333)
T PRK08638 166 GLEILEDL-WDVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQSENVHGMAASFYAGEITTHRTTGTLADGCDVS-RP 243 (333)
T ss_pred HHHHHhhc-CCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHCCCcccCCCCCCeeccccCC-Cc
Confidence 99999999 57999999999999999999999999999999999999997653 344332 223444333 24
Q ss_pred cccc----cccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhh
Q 020528 236 GVLD----VNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLF 311 (325)
Q Consensus 236 ~~~~----~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~ 311 (325)
..+. ++++|+++.|+|+|+++++++|++++|+++||++|+++|++.........++++||+|+| ||+.++++ +
T Consensus 244 ~~~~~~~~~~~~d~~v~Vsd~ea~~a~~~l~~~~gi~~e~sgA~~~Aa~~~~~~~~~~~~~~vv~v~~-Ggn~~~~~--~ 320 (333)
T PRK08638 244 GNLTYEIVRELVDDIVLVSEDEIRNAMKDLIQRNKVVTEGAGALATAALLSGKLDQYIQNKKVVAIIS-GGNVDLSR--V 320 (333)
T ss_pred cHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCCeechhHHHHHHHHHhCCcccccCCCcEEEEEC-CCCCCHHH--H
Confidence 3333 468999999999999999999999999999999888888876532222236788999996 58888875 5
Q ss_pred HHHHH
Q 020528 312 ESVKK 316 (325)
Q Consensus 312 ~~~~~ 316 (325)
.+++.
T Consensus 321 ~~~~~ 325 (333)
T PRK08638 321 SQITG 325 (333)
T ss_pred HHHHH
Confidence 55543
|
|
| >PRK08526 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-60 Score=443.77 Aligned_cols=299 Identities=24% Similarity=0.290 Sum_probs=257.7
Q ss_pred ccchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHH
Q 020528 5 KSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIG 84 (325)
Q Consensus 5 ~~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 84 (325)
...+++++...+++|||+++++|++..|++||+|+|++|||||||+|++.+.+..+.+.+. .++||++|+||||++
T Consensus 7 i~~a~~~i~~~i~~TPl~~~~~Ls~~~g~~iylK~E~lqptGSfK~RgA~n~i~~l~~~~~----~~gVV~aSaGNhg~a 82 (403)
T PRK08526 7 IYQAKQRISGFVNKTPFAYAPFLSKISGAEVYLKKENLQITGAYKIRGAYNKIANLSEEQK----QHGVIAASAGNHAQG 82 (403)
T ss_pred HHHHHHHHhCcCCCCCccchHHHHHHhCCeEEEEecCCCCCCCCHHHHHHHHHHhccHhhc----CCEEEEECccHHHHH
Confidence 3567789999999999999999998788899999999999999999999999998876543 257999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhch
Q 020528 85 LAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETT 164 (325)
Q Consensus 85 lA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~ 164 (325)
+|++|+++|++|+||||++++..|+++++.|||+|+.++. +++++...+++++++. +++|++||+|+.+ ++||+|+
T Consensus 83 vA~aa~~~Gi~~~IvmP~~~p~~k~~~~r~~GA~Vv~~g~--~~~~a~~~a~~~a~~~-g~~~v~p~~~~~~-i~G~gti 158 (403)
T PRK08526 83 VAISAKKFGIKAVIVMPEATPLLKVSGTKALGAEVILKGD--NYDEAYAFALEYAKEN-NLTFIHPFEDEEV-MAGQGTI 158 (403)
T ss_pred HHHHHHHcCCCEEEEEcCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEeeCCCCCHHH-HhhhHHH
Confidence 9999999999999999999999999999999999999985 6899999999998886 7899999999986 8999999
Q ss_pred HHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----CCcccccCCCCCC-
Q 020528 165 GPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKP-----GPHKIQGIGAGFI- 234 (325)
Q Consensus 165 ~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~-----~~~~~~gl~~~~~- 234 (325)
++||++|+ +.+|+||+|+|+||+++|++.++|..+|++|||||||++++++. .+++ ..+.++|++...+
T Consensus 159 a~EI~eq~-~~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigVep~~~~~~~~s~~~g~~~~~~~~~tiadgiav~~~~ 237 (403)
T PRK08526 159 ALEMLDEI-SDLDMVVVPVGGGGLISGIASAAKQINPNIKIIGVGAKGAPAMYESFHAKKIINSKSVRTIADGIAVRDAS 237 (403)
T ss_pred HHHHHHhc-CCCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEEEECCCChHHHHHHcCCcccCCCCCceeccccCCCCC
Confidence 99999999 57999999999999999999999999999999999999998763 2332 2355677765421
Q ss_pred cc--ccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhH
Q 020528 235 PG--VLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFE 312 (325)
Q Consensus 235 ~~--~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~ 312 (325)
|. ...++++|+++.|+|+|+.++++++++++|+++||++|+++|++++.... ..++++||+++|+ |+.++++ +.
T Consensus 238 ~~~~~~~~~~vd~~v~V~d~ei~~A~~~l~~~~gi~ve~aga~~lAall~~~~~-~~~~~~Vv~ilsG-Gnid~~~--~~ 313 (403)
T PRK08526 238 PINLAIILECVDDFVQVDDEEIANAILFLLEKQKIVVEGAGAASVAALLHQKID-LKKGKKIGVVLSG-GNIDVQM--LN 313 (403)
T ss_pred HHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCcEeeHHHHHHHHHHHhCccc-cccCCeEEEEECC-CCCCHHH--HH
Confidence 22 23357899999999999999999999999999999999999999753211 1357899999965 7876664 55
Q ss_pred HHHH
Q 020528 313 SVKK 316 (325)
Q Consensus 313 ~~~~ 316 (325)
.+..
T Consensus 314 ~i~~ 317 (403)
T PRK08526 314 IIIE 317 (403)
T ss_pred HHHH
Confidence 5544
|
|
| >PRK06352 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-60 Score=439.17 Aligned_cols=289 Identities=24% Similarity=0.327 Sum_probs=248.5
Q ss_pred HHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHH
Q 020528 10 KDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMA 89 (325)
Q Consensus 10 ~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a 89 (325)
.++++++|+|||+++++|+...+.+||+|+|++|||||||||++.+++.++.++|. ++||++|+||||+|+|++|
T Consensus 20 ~~~~l~~G~TPL~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~a~~~g~-----~~vV~aSsGN~G~AlA~~a 94 (351)
T PRK06352 20 PMISLAEGNTPLIPLPNLSKELGVTLYGKYEGLNPTGSFKDRGMVMAVAKAKEEGA-----EAVICASTGNTSAAAAAYA 94 (351)
T ss_pred CccccCCCCCCeeEcHhhHHHhCCeEEEEecCCCCccChHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHHH
Confidence 35788999999999999987777899999999999999999999999999999886 6799999999999999999
Q ss_pred HHcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHH
Q 020528 90 AAKGYRLIITMPAS-MSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEI 168 (325)
Q Consensus 90 ~~~g~~~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei 168 (325)
+.+|++|+||||++ .+..|+++++.+||+|+.+++ +++++.+.+++++++. +++++++ .|+.+ +.||+++++||
T Consensus 95 a~~G~~~~ivvp~~~~~~~k~~~~~a~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~-~n~~~-~~G~~t~~~EI 169 (351)
T PRK06352 95 TRAGLKAYIVIPEGKVALGKLAQAVMYGADIISIQG--NFDEALKSVRELAETE-AVTLVNS-VNPYR-LEGQKTAAFEI 169 (351)
T ss_pred HHcCCcEEEEEeCCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CcccccC-CCccc-eeeHHHHHHHH
Confidence 99999999999998 589999999999999999995 5888999999988775 5666664 58887 68999999999
Q ss_pred HhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCC-----cEEEEEecCCCccccCCCCCC---cccccCCCCCCccc--c
Q 020528 169 WKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPE-----IKLYGVEPVESAVLSGGKPGP---HKIQGIGAGFIPGV--L 238 (325)
Q Consensus 169 ~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~-----~~vigV~~~~~~~~~~~~~~~---~~~~gl~~~~~~~~--~ 238 (325)
++|++..||+||+|+|+||+++|++++||+++|. +|||+|||++++++..+.+.. +..+++..+. |.. .
T Consensus 170 ~~Q~~~~~D~vvv~vG~GG~~~Gi~~~lk~~~~~~~~~~~~vi~Vep~g~~~~~~g~~~~~~~~ia~~l~~~~-~~~~~~ 248 (351)
T PRK06352 170 CEQLGSAPDVLAIPVGNAGNISAYWKGFKEWNEAKASGLPRMHGFEAEGAAAIVQGKPIDNPETIATAIRIGN-PASWGL 248 (351)
T ss_pred HHHcCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCCCCCEEEEEeeCCCCHHHhCCCcCCCCcceeEEEeCC-CCcHHH
Confidence 9999767999999999999999999999999887 899999999998776554421 2223443332 222 2
Q ss_pred ccccCC----eEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCC-CCCCEEEEEeCCCCCCCcchh
Q 020528 239 DVNLLD----ETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE-NAGKLIVVVFPSFGERYLSSV 309 (325)
Q Consensus 239 ~~~~~d----~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~i~t~~g~~~~~~~ 309 (325)
..+.+| ..+.|+|+|++++++++++++|+++||+||+++|+++++.+++. .++++||+++||+|+||+++.
T Consensus 249 ~~~~~d~~~g~~~~V~d~e~~~a~r~la~~eGi~vepssaaalAa~~~~~~~~~~~~~~~Vv~v~tg~G~~~~~~~ 324 (351)
T PRK06352 249 AEAARDESGGYIHSVTDDEIVNAYKKIAAQDGVFIEPGSAASLAGVIQHVANGTIKKGETVVCVFTGNGLKDPDTA 324 (351)
T ss_pred HHHHHHHhCCEEEEECHHHHHHHHHHHHhhcCceEchhHHHHHHHHHHHHHcCCCCCCCcEEEEeCCCCcCChHHH
Confidence 223333 48999999999999999999999999999999999999887543 467899999999999999874
|
|
| >PRK06608 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-60 Score=435.18 Aligned_cols=290 Identities=19% Similarity=0.231 Sum_probs=249.5
Q ss_pred ccchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHH
Q 020528 5 KSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIG 84 (325)
Q Consensus 5 ~~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 84 (325)
...+++++...+++|||+++++|++..|.+||+|+|++|||||||||++.+++.++.++|.+. ++||++|+||||+|
T Consensus 10 i~~A~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~---~~vv~~SsGN~g~a 86 (338)
T PRK06608 10 IAAAHNRIKQYLHLTPIVHSESLNEMLGHEIFFKVESLQKTGAFKVRGVLNHLLELKEQGKLP---DKIVAYSTGNHGQA 86 (338)
T ss_pred HHHHHHHHhCcCcCCCccchHhHHHHhCCEEEEEeCCCCCCCCcHHHHHHHHHHHhhhhcCcC---CeEEEECCCHHHHH
Confidence 355778899999999999999999888889999999999999999999999999999988753 57999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhch
Q 020528 85 LAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETT 164 (325)
Q Consensus 85 lA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~ 164 (325)
+|++|+.+|++|+||||+++++.|+++++.+||+|+.++. .+++.+++++ .++ +++||++||+|+.+ ++|++++
T Consensus 87 lA~~a~~~G~~~~vv~p~~~~~~k~~~l~~~GA~V~~~~~---~~~~~~~a~~-~~~-~~~~~~~~~~~~~~-~~g~~t~ 160 (338)
T PRK06608 87 VAYASKLFGIKTRIYLPLNTSKVKQQAALYYGGEVILTNT---RQEAEEKAKE-DEE-QGFYYIHPSDSDST-IAGAGTL 160 (338)
T ss_pred HHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC---HHHHHHHHHH-HHh-CCCEEcCCCCCHHH-hccHHHH
Confidence 9999999999999999999999999999999999999973 4677777777 444 47899999999887 6899999
Q ss_pred HHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC------CCcccccCCCCCC
Q 020528 165 GPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKP------GPHKIQGIGAGFI 234 (325)
Q Consensus 165 ~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~------~~~~~~gl~~~~~ 234 (325)
+.||++|++++||+||+|+|+||+++|+++++|...+.+|||+|||.+++++. .+++ ..+..++++.+..
T Consensus 161 a~Ei~~q~~~~~D~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigVep~~~~~~~~s~~~g~~~~~~~~~~t~~~gl~~~~~ 240 (338)
T PRK06608 161 CYEALQQLGFSPDAIFASCGGGGLISGTYLAKELISPTSLLIGSEPLNANDAYLSLKNNKIYRLNYSPNTIADGLKTLSV 240 (338)
T ss_pred HHHHHHhcCCCcCEEEEeechhHHHHHHHHHHHhcCCCCEEEEEeeCCChHHHHHHHcCCeEeCCCCCCCeecccCCCCC
Confidence 99999999768999999999999999999999999999999999999997642 3321 2345677765432
Q ss_pred cc-ccc-cccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCC
Q 020528 235 PG-VLD-VNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERY 305 (325)
Q Consensus 235 ~~-~~~-~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~ 305 (325)
.. .+. .+.+|+.+.|+|+|++++++++++++|+++||+||+++++++++.++. .++++||+++|| |+++
T Consensus 241 ~~~~~~~~~~~d~~v~Vsd~e~~~a~~~l~~~~gi~vepssaa~laa~~~~~~~~-~~~~~Vv~v~tg-g~~d 311 (338)
T PRK06608 241 SARTFEYLKKLDDFYLVEEYEIYYWTAWLTHLLKVICEPSSAINMVAVVNWLKTQ-SKPQKLLVILSG-GNID 311 (338)
T ss_pred CHHHHHHHHhCCCEEEECHHHHHHHHHHHHHHcCcEEchHHHHHHHHHHhhchhh-cCCCeEEEEeCC-CccC
Confidence 21 122 134799999999999999999999999999999999999999876543 367899999987 5543
|
|
| >cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-59 Score=426.82 Aligned_cols=293 Identities=23% Similarity=0.238 Sum_probs=248.2
Q ss_pred CCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEE
Q 020528 18 KTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLI 97 (325)
Q Consensus 18 ~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~ 97 (325)
+|||+++++|+...|.+||+|+|++|||||||||++.+++.++.++|. .+ .++||++|+||||.|+|++|+.+|++|+
T Consensus 1 ~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-~~-~~~vv~aSsGN~g~alA~~a~~~G~~~~ 78 (316)
T cd06448 1 KTPLIESTALSKTAGCNVFLKLENLQPSGSFKIRGIGHLCQKSAKQGL-NE-CVHVVCSSGGNAGLAAAYAARKLGVPCT 78 (316)
T ss_pred CCCccccchhhHhhCCeEEEEeccCCCcCChHHHHHHHHHHHHHHhhc-cc-CCeEEEeCCcHHHHHHHHHHHHcCCCEE
Confidence 699999999987777899999999999999999999999999999885 22 2679999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHHHhhhCC--C
Q 020528 98 ITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGG--K 175 (325)
Q Consensus 98 i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~ql~~--~ 175 (325)
||+|+.++..|+++|+.+||+|+.+++. .++++.+.+++++++.++++|++||+|+.+ ..||.++++||++|+.+ .
T Consensus 79 iv~p~~~~~~k~~~l~~~GA~v~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~n~~~-~~g~~t~~~Ei~~q~~~~~~ 156 (316)
T cd06448 79 IVVPESTKPRVVEKLRDEGATVVVHGKV-WWEADNYLREELAENDPGPVYVHPFDDPLI-WEGHSSMVDEIAQQLQSQEK 156 (316)
T ss_pred EEECCCCCHHHHHHHHHcCCEEEEECCc-hHHHHHHHHHHHHhccCCcEEeCCCCCchh-hccccHHHHHHHHHccccCC
Confidence 9999999999999999999999999863 267777778887776557899999999988 68889999999999965 5
Q ss_pred CCEEEEecCCchhHHHHHHHHHhhC-CCcEEEEEecCCCcccc----CCCC-----CCcccccCCCCCCcc---cccccc
Q 020528 176 IDALVSGIGTGGTVTGAGKYLKEHN-PEIKLYGVEPVESAVLS----GGKP-----GPHKIQGIGAGFIPG---VLDVNL 242 (325)
Q Consensus 176 ~D~iv~pvG~Gg~~aGi~~~~k~~~-~~~~vigV~~~~~~~~~----~~~~-----~~~~~~gl~~~~~~~---~~~~~~ 242 (325)
||+||+|+|+||+++|++++||+.+ |+++||+|||++++++. .+++ ..+.++|++.+..+. ...++.
T Consensus 157 ~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~ii~Vep~g~~~~~~~~~~g~~~~~~~~~t~a~glg~~~~~~~~~~~~~~~ 236 (316)
T cd06448 157 VDAIVCSVGGGGLLNGIVQGLERNGWGDIPVVAVETEGAHSLNASLKAGKLVTLPKITSVATSLGAKTVSSQALEYAQEH 236 (316)
T ss_pred CCEEEEEeCchHHHHHHHHHHHhcCCCCCEEEEEeeCCChHHHHHHHcCCcEecCCCCchhhccCCCCcCHHHHHHHHhc
Confidence 9999999999999999999999996 99999999999998764 2322 234556787665443 223456
Q ss_pred CCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHH-----hcCC-CCCCEEEEEeCCCCCCCcchhhhHHHHH
Q 020528 243 LDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIA-----KRPE-NAGKLIVVVFPSFGERYLSSVLFESVKK 316 (325)
Q Consensus 243 ~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~-----~~~~-~~~~~vv~i~t~~g~~~~~~~~~~~~~~ 316 (325)
.|+++.|+|+|+++++++|++++|+++||+||++++++++.. +++. .++++||+|+||+...++++ +.++++
T Consensus 237 ~~~~v~Vsd~e~~~a~~~l~~~~gi~~~~ssaa~laa~~~~~~~~~~~~~~~~~~~~Vv~iltg~n~~~~~~--~~~~~~ 314 (316)
T cd06448 237 NIKSEVVSDRDAVQACLRFADDERILVEPACGAALAVVYSGKILDLQLEVLLTPLDNVVVVVCGGSNITLEQ--LKEYKK 314 (316)
T ss_pred CCeEEEECHHHHHHHHHHHHHHcCceechhHHHHHHHHHhCcchhhhcccccCCCCeEEEEECCCCCCCHHH--HHHHHH
Confidence 899999999999999999999999999999999999998532 1112 46889999998866545554 666654
|
|
| >PRK08197 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-59 Score=440.90 Aligned_cols=289 Identities=26% Similarity=0.235 Sum_probs=251.8
Q ss_pred HHhhhhCCCCceecccccCCCC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHH
Q 020528 11 DVTELIGKTPLVYLNRIVDGCV-ARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMA 89 (325)
Q Consensus 11 ~i~~~~~~TPL~~~~~l~~~~~-~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a 89 (325)
.+++++|+|||+++++|++.+| .+||+|+|++|||||||||++.+++..+.++|. ++||++|+||||+|+|++|
T Consensus 72 ~vslgeG~TPL~~~~~l~~~~G~~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~a 146 (394)
T PRK08197 72 IVSLGEGMTPLLPLPRLGKALGIGRLWVKDEGLNPTGSFKARGLAVGVSRAKELGV-----KHLAMPTNGNAGAAWAAYA 146 (394)
T ss_pred CCccCcCCCCceEhHHHHHHhCCCcEEEEeCCCCCCcCcHHhHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHH
Confidence 4888999999999999987776 599999999999999999999999999999886 7899999999999999999
Q ss_pred HHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHHH
Q 020528 90 AAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIW 169 (325)
Q Consensus 90 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~ 169 (325)
+.+|++|+||+|++++..|+.+++.+||+|+.+++ +++++.+.+++.+++. ++|+++++.||.+ ++|++|+++||+
T Consensus 147 a~~G~~~~v~vp~~~~~~k~~~~~~~GA~Vi~v~~--~~~~~~~~a~~~~~~~-g~~~~~~~~np~~-ieG~~t~a~Ei~ 222 (394)
T PRK08197 147 ARAGIRATIFMPADAPEITRLECALAGAELYLVDG--LISDAGKIVAEAVAEY-GWFDVSTLKEPYR-IEGKKTMGLELA 222 (394)
T ss_pred HHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CcccccCCCCccc-hhcHHHHHHHHH
Confidence 99999999999999999999999999999999996 5788888888888776 7899999999998 789999999999
Q ss_pred hhhCC-CCCEEEEecCCchhHHHHHHHHHhh-------CCCcEEEEEecCCCccccC----CCC-------CCcccccCC
Q 020528 170 KGTGG-KIDALVSGIGTGGTVTGAGKYLKEH-------NPEIKLYGVEPVESAVLSG----GKP-------GPHKIQGIG 230 (325)
Q Consensus 170 ~ql~~-~~D~iv~pvG~Gg~~aGi~~~~k~~-------~~~~~vigV~~~~~~~~~~----~~~-------~~~~~~gl~ 230 (325)
+|+++ .||+||+|+|+||+++|++++|+++ .+.+|||+|||++++++.. +.. ..+..+++.
T Consensus 223 eQl~~~~pD~vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~~~~p~ii~Vq~~g~~~l~~~~~~g~~~~~~~~~~~tia~gl~ 302 (394)
T PRK08197 223 EQLGWRLPDVILYPTGGGVGLIGIWKAFDELEALGWIGGKRPRLVAVQAEGCAPIVKAWEEGKEESEFWEDAHTVAFGIR 302 (394)
T ss_pred HHcCCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCcCCCCCeEEEEEeCCCCHHHHHHHcCCCccccCCCCCceehhhh
Confidence 99975 4999999999999999999999997 3889999999999987632 221 122334443
Q ss_pred CCCCccc---c--ccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCC-CCCCEEEEEeCCCCCC
Q 020528 231 AGFIPGV---L--DVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE-NAGKLIVVVFPSFGER 304 (325)
Q Consensus 231 ~~~~~~~---~--~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~i~t~~g~~ 304 (325)
.+..... + .++..+..+.|+|+|+++++++|++++|+++||+||+++++++++.+++. .++++||+++||+|.|
T Consensus 303 ~~~~~~~~~~~~~~~~~~g~~v~V~d~e~~~a~~~la~~eGi~vepssaaala~~~~l~~~~~~~~~~~Vv~v~tG~g~k 382 (394)
T PRK08197 303 VPKALGDFLVLDAVRETGGCAIAVSDDAILAAQRELAREEGLFACPEGAATFAAARQLRESGWLKGDERVVLFNTGSGLK 382 (394)
T ss_pred CCCCCCHHHHHHHHHHhCCEEEEeCHHHHHHHHHHHHhcCCceECchHHHHHHHHHHHHHcCCcCCCCcEEEEeCCCCcC
Confidence 3321111 1 12456789999999999999999999999999999999999999988764 4678999999999999
Q ss_pred Ccch
Q 020528 305 YLSS 308 (325)
Q Consensus 305 ~~~~ 308 (325)
|+++
T Consensus 383 ~~~~ 386 (394)
T PRK08197 383 YPDT 386 (394)
T ss_pred chhh
Confidence 9886
|
|
| >PRK07048 serine/threonine dehydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-59 Score=430.00 Aligned_cols=292 Identities=20% Similarity=0.264 Sum_probs=251.0
Q ss_pred ccchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHH
Q 020528 5 KSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIG 84 (325)
Q Consensus 5 ~~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 84 (325)
....++++...+++|||+++++++...|.+||+|+|++|||||||||++.+++.++.+.+. ..+||++|+||||+|
T Consensus 11 i~~a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~a 86 (321)
T PRK07048 11 VAAAAARLAGVAHRTPVLTSRTADARTGAQVFFKCENFQRMGAFKFRGAYNALSQFSPEQR----RAGVVTFSSGNHAQA 86 (321)
T ss_pred HHHHHHHhhCCCCCCCCccchhhHHhcCCeEEEEeccCCCCCCeeHHHHHHHHHhhhHhhc----CCcEEEeCCCHHHHH
Confidence 3567889999999999999999987777899999999999999999999999998875432 256999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhch
Q 020528 85 LAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETT 164 (325)
Q Consensus 85 lA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~ 164 (325)
+|++|+.+|++|+|+||++++..|+++++.+||+|+.++. +++++.+.+++++++. +++|++||+|+.+ ++||+++
T Consensus 87 lA~~a~~~G~~~~vvvp~~~~~~k~~~~~~~GAeV~~~~~--~~~~~~~~a~~l~~~~-g~~~~~~~~~~~~-~~g~~t~ 162 (321)
T PRK07048 87 IALSARLLGIPATIVMPQDAPAAKVAATRGYGGEVVTYDR--YTEDREEIGRRLAEER-GLTLIPPYDHPHV-IAGQGTA 162 (321)
T ss_pred HHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEECCCCCcch-hhccchH
Confidence 9999999999999999999999999999999999999995 4678888888888886 7899999999987 7899999
Q ss_pred HHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccc----cCCCC-----CCcccccCCCCC--
Q 020528 165 GPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVL----SGGKP-----GPHKIQGIGAGF-- 233 (325)
Q Consensus 165 ~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~----~~~~~-----~~~~~~gl~~~~-- 233 (325)
++||++|+ +.||+||+|+|+||+++|+++++|+.+|++|||+|||++++++ ..++. ..+.++++....
T Consensus 163 ~~EI~~q~-~~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~g~~~~~~~ 241 (321)
T PRK07048 163 AKELFEEV-GPLDALFVCLGGGGLLSGCALAARALSPGCKVYGVEPEAGNDGQQSFRSGEIVHIDTPRTIADGAQTQHLG 241 (321)
T ss_pred HHHHHhhc-CCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEeeCCChhHHHHHHcCCcccCCCCCCcccccccCCcc
Confidence 99999999 4899999999999999999999999999999999999999754 23332 122334443221
Q ss_pred -CccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcch
Q 020528 234 -IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSS 308 (325)
Q Consensus 234 -~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~ 308 (325)
..++...+++|+++.|+|+|+++++++|++++|+++||++|+++++++++.+. .++++||+|+|+ |+.+++.
T Consensus 242 ~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~eps~a~~laa~~~~~~~--~~~~~vv~i~tG-Gn~~~~~ 314 (321)
T PRK07048 242 NYTFPIIRRLVDDIVTVSDAELVDAMRFFAERMKIVVEPTGCLGAAAALRGKVP--LKGKRVGVIISG-GNVDLAR 314 (321)
T ss_pred HHHHHHHHHhCCceEEECHHHHHHHHHHHHHhCCceeccHHHHHHHHHHhCchh--cCCCeEEEEeCC-CCCCHHH
Confidence 12233457889999999999999999999999999999999999999987554 367899999974 7876664
|
|
| >PRK06382 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-59 Score=442.01 Aligned_cols=290 Identities=23% Similarity=0.296 Sum_probs=252.6
Q ss_pred cchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHH
Q 020528 6 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGL 85 (325)
Q Consensus 6 ~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~al 85 (325)
....+++...+++|||++++.|+...|++||+|+|++|||||||||++.+++..+.+.+. .++||++|+||||+|+
T Consensus 13 ~~a~~~~~~~i~~TPl~~~~~ls~~~g~~v~~K~E~~nptGSfK~Rga~~~i~~~~~~~~----~~gvv~aSsGN~g~a~ 88 (406)
T PRK06382 13 LYAKSYLEGYLNRTPLIHSTTFGDEYGGDIYFKLENFQKTGSFKSRGAVFKFSKLSEDEL----RNGVITASAGNHAQGV 88 (406)
T ss_pred HHHHHHHhCcCCCCCeeEhhhhHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHhcchhcc----CCeEEEECCCHHHHHH
Confidence 456788999999999999999998888899999999999999999999999988876553 2469999999999999
Q ss_pred HHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchH
Q 020528 86 AFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTG 165 (325)
Q Consensus 86 A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~ 165 (325)
|++|+.+|++|+||||++++..|+++++.+||+|+.++. +++++.+.+++++++. +++|++||+|+.+ ++||+|++
T Consensus 89 A~aa~~~G~~~~ivmp~~~~~~k~~~~~~~GA~Vv~~~~--~~~~a~~~a~~la~~~-~~~~v~~~~~~~~-i~g~~t~~ 164 (406)
T PRK06382 89 AYAASINGIDAKIVMPEYTIPQKVNAVEAYGAHVILTGR--DYDEAHRYADKIAMDE-NRTFIEAFNDRWV-ISGQGTIG 164 (406)
T ss_pred HHHHHHcCCCEEEEEcCCCHHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCccCChHH-HHHHHHHH
Confidence 999999999999999999999999999999999999985 5899999999998886 7899999999987 78999999
Q ss_pred HHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----CCcccccCCCCC---
Q 020528 166 PEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKP-----GPHKIQGIGAGF--- 233 (325)
Q Consensus 166 ~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~-----~~~~~~gl~~~~--- 233 (325)
+||++|+ +.||+||+|+|+||+++|+++++|...|++|||||||++++++. .+++ ..+.++|++.+.
T Consensus 165 ~Ei~eq~-~~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigVe~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~ 243 (406)
T PRK06382 165 LEIMEDL-PDLDQIIVPVGGGGLISGIALAAKHINPNVKIIGIESELSDSMKASLREGKIVAHTSGVSICDGISVKYPGD 243 (406)
T ss_pred HHHHHhc-CCCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCCCCCccccccCCCccH
Confidence 9999999 57999999999999999999999999999999999999998762 3332 245567877654
Q ss_pred CccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcc
Q 020528 234 IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLS 307 (325)
Q Consensus 234 ~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~ 307 (325)
.+..+.++++|+++.|+|+|+.++++++++++|+++||++|+++++++.... ..++++||+|+| ||+.+++
T Consensus 244 ~~~~~~~~~~d~~v~V~d~ei~~a~~~l~~~~gi~~epsga~~laal~~~~~--~~~~~~Vv~i~s-GGn~d~~ 314 (406)
T PRK06382 244 LTFDIAKNYVDDIVTVTEESVSKAIYKLFEREKIVAEPSGAVGLAAIMEGKV--DVKGKKVAIVVS-GGNINPL 314 (406)
T ss_pred HHHHHHHHcCCEEEEECHHHHHHHHHHHHHHcCceechHHHHHHHHHHhccc--cCCCCEEEEEeC-CCCCCHH
Confidence 2334456789999999999999999999999999999999999997764321 135778999996 5775444
|
|
| >PLN02550 threonine dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-59 Score=448.38 Aligned_cols=293 Identities=22% Similarity=0.292 Sum_probs=254.9
Q ss_pred HHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHH
Q 020528 11 DVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAA 90 (325)
Q Consensus 11 ~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~ 90 (325)
++...+++|||+++++|+..+|++||+|+|++|||||||+|++.+.+.++.+... . ++||++|+||||+++|++|+
T Consensus 102 ~v~~~i~~TPL~~s~~LS~~~g~~IylK~E~lqptGSFK~RGA~n~I~~L~~e~~-~---~GVV~aSaGNhAqgvA~aA~ 177 (591)
T PLN02550 102 KVYDVAIESPLQLAKKLSERLGVKVLLKREDLQPVFSFKLRGAYNMMAKLPKEQL-D---KGVICSSAGNHAQGVALSAQ 177 (591)
T ss_pred hhhccccCChhhhhHHhhHhhCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHhcC-C---CCEEEECCCHHHHHHHHHHH
Confidence 4558889999999999998888999999999999999999999999998854432 2 56999999999999999999
Q ss_pred HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHHHh
Q 020528 91 AKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWK 170 (325)
Q Consensus 91 ~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~ 170 (325)
++|++|+||||++++..|++.++.+||+|+.++. +++++.+.+++++++. +++|++||+|+.+ ++||+|+|+||++
T Consensus 178 ~lGika~IvmP~~tp~~Kv~~~r~~GAeVvl~g~--~~dea~~~A~~la~e~-g~~fi~pfddp~v-iaGqgTig~EI~e 253 (591)
T PLN02550 178 RLGCDAVIAMPVTTPEIKWQSVERLGATVVLVGD--SYDEAQAYAKQRALEE-GRTFIPPFDHPDV-IAGQGTVGMEIVR 253 (591)
T ss_pred HcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEEECCCCChHH-HHHHHHHHHHHHH
Confidence 9999999999999999999999999999999984 6899999999998886 7789999999987 7999999999999
Q ss_pred hhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCCC-----CcccccCCCCCC---cccc
Q 020528 171 GTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKPG-----PHKIQGIGAGFI---PGVL 238 (325)
Q Consensus 171 ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~~-----~~~~~gl~~~~~---~~~~ 238 (325)
|+.+.+|+||+|+|+||+++|++.++|..+|++|||||||++++++. .|++. .+.++|++...+ +..+
T Consensus 254 Ql~~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGVEp~~a~~~~~s~~~G~~v~~~~~~tiAdGiav~~~G~~t~~i 333 (591)
T PLN02550 254 QHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEPSDANAMALSLHHGERVMLDQVGGFADGVAVKEVGEETFRL 333 (591)
T ss_pred HcCCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCccccCCCCCccceeecCCCCHHHHHH
Confidence 99656999999999999999999999999999999999999998874 34331 245567765432 3334
Q ss_pred ccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhHHH
Q 020528 239 DVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFESV 314 (325)
Q Consensus 239 ~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~~~ 314 (325)
.++++|+++.|+|+|+.++++++++++|+++||++|+++||++++.+....++++||+|+|| |+.++++ +..+
T Consensus 334 ~~~~vD~vV~Vsd~eI~~Ai~~l~e~~givvEpAGA~alAall~~~~~~~~~g~~Vv~vlsG-gNid~~~--l~~v 406 (591)
T PLN02550 334 CRELVDGVVLVSRDAICASIKDMFEEKRSILEPAGALALAGAEAYCKYYGLKDENVVAITSG-ANMNFDR--LRIV 406 (591)
T ss_pred HHhhCCEEEEECHHHHHHHHHHHHHHCCCEEeHHHHHHHHHHHHHHHhcCCCCCeEEEEecC-CCCCHHH--HHHH
Confidence 56889999999999999999999999999999999999999999876544578899999955 6655553 4444
|
|
| >PRK06110 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-59 Score=429.02 Aligned_cols=298 Identities=21% Similarity=0.252 Sum_probs=255.9
Q ss_pred cchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHH
Q 020528 6 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGL 85 (325)
Q Consensus 6 ~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~al 85 (325)
..+++++...+++|||+++++|++.+|.+||+|+|++|||||||||++.+++..+.+++... ..||++|+||||+|+
T Consensus 9 ~~a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~l~~a~~~~~~~---~~vv~aSsGN~g~al 85 (322)
T PRK06110 9 EAAAAVVYAAMPPTPQYRWPLLAERLGCEVWVKHENHTPTGAFKVRGGLVYFDRLARRGPRV---RGVISATRGNHGQSV 85 (322)
T ss_pred HHHHHHHhCcCcCCCcccchhHHHHhCCeEEEEeccCCCcCCcHHHHHHHHHHHhhhhcCCC---ceEEEECCCHHHHHH
Confidence 45678889999999999999999777889999999999999999999999999998876533 469999999999999
Q ss_pred HHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchH
Q 020528 86 AFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTG 165 (325)
Q Consensus 86 A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~ 165 (325)
|++|+++|++|+||||++.+..|+++++.+||+|+.+++ +++++.+.+.+++++. ++||+++| |+.+ +.||++++
T Consensus 86 A~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~-~~~~-~~G~~t~~ 160 (322)
T PRK06110 86 AFAARRHGLAATIVVPHGNSVEKNAAMRALGAELIEHGE--DFQAAREEAARLAAER-GLHMVPSF-HPDL-VRGVATYA 160 (322)
T ss_pred HHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEcCCC-CChH-HhccchHH
Confidence 999999999999999999999999999999999999974 6889999999988886 78999998 5655 68999999
Q ss_pred HHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCCC-----CcccccCCCCCC-c
Q 020528 166 PEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKPG-----PHKIQGIGAGFI-P 235 (325)
Q Consensus 166 ~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~~-----~~~~~gl~~~~~-~ 235 (325)
+||++|++ .+|+||+|+|+||+++|++.++|+.+|++|||+|||++++++. .+++. .+..++++.... |
T Consensus 161 ~Ei~~q~~-~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~Vep~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~ 239 (322)
T PRK06110 161 LELFRAVP-DLDVVYVPIGMGSGICGAIAARDALGLKTRIVGVVSAHAPAYALSFEAGRVVTTPVATTLADGMACRTPDP 239 (322)
T ss_pred HHHHhhCC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEeeCCChHHHHHHHcCCcccCCCCCCcccccCCCCccH
Confidence 99999994 7999999999999999999999999999999999999998763 33322 234455543321 2
Q ss_pred ccc--ccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhHH
Q 020528 236 GVL--DVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFES 313 (325)
Q Consensus 236 ~~~--~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~~ 313 (325)
..+ .++++|+++.|+|+|++++++++++++|+++||++|+++++++++.+. .++++||+|+|+ |+.+++. |.+
T Consensus 240 ~~~~~~~~~~d~~~~Vsd~e~~~a~~~l~~~~gi~~e~ssaa~laa~~~~~~~--~~~~~Vv~i~tG-gn~d~~~--~~~ 314 (322)
T PRK06110 240 EALEVIRAGADRIVRVTDDEVAAAMRAYFTDTHNVAEGAGAAALAAALQERER--LAGKRVGLVLSG-GNIDRAV--FAR 314 (322)
T ss_pred HHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEehHHHHHHHHHHhChhh--hCCCcEEEEECC-CCCCHHH--HHH
Confidence 222 347899999999999999999999999999999999999999986543 367899999976 7877664 666
Q ss_pred HHHH
Q 020528 314 VKKE 317 (325)
Q Consensus 314 ~~~~ 317 (325)
+...
T Consensus 315 ~~~~ 318 (322)
T PRK06110 315 VLAG 318 (322)
T ss_pred HHhh
Confidence 6554
|
|
| >PRK07476 eutB threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-59 Score=427.65 Aligned_cols=299 Identities=21% Similarity=0.271 Sum_probs=254.0
Q ss_pred ccchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHH
Q 020528 5 KSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIG 84 (325)
Q Consensus 5 ~~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 84 (325)
....+++|...+++|||+++++|+...|.+||+|+|++|||||||||++.+++.++.++|. .++||++|+||||+|
T Consensus 6 i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~a~~~~~----~~gvv~aSsGN~g~a 81 (322)
T PRK07476 6 IYRARRRIAGRVRRTPLVASASLSARAGVPVWLKLETLQPTGSFKLRGATNALLSLSAQER----ARGVVTASTGNHGRA 81 (322)
T ss_pred HHHHHHHHhCCCCCCCceechhhHHhhCCeEEEEEccCCCCCCchHHHHHHHHHhhhhhhh----CCeEEEECCChHHHH
Confidence 3567889999999999999999988778899999999999999999999999999998886 245999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhch
Q 020528 85 LAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETT 164 (325)
Q Consensus 85 lA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~ 164 (325)
+|++|+++|++|+||||+++++.|+++++.+||+|+.++. +++++.+.+.+++++. +++|++||+|+.+ ++|++++
T Consensus 82 lA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~-~~g~~t~ 157 (322)
T PRK07476 82 LAYAARALGIRATICMSRLVPANKVDAIRALGAEVRIVGR--SQDDAQAEVERLVREE-GLTMVPPFDDPRI-IAGQGTI 157 (322)
T ss_pred HHHHHHHhCCCEEEEeCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcce-eechhHH
Confidence 9999999999999999999999999999999999999985 5788888999988876 7899999999988 6899999
Q ss_pred HHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----CCcccccCCCC---
Q 020528 165 GPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKP-----GPHKIQGIGAG--- 232 (325)
Q Consensus 165 ~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~-----~~~~~~gl~~~--- 232 (325)
++||++|+ +++|+||+|+|+||+++|++++||..+|++|||+|||++++++. .+.+ ..+..+++..+
T Consensus 158 ~~Ei~~Q~-~~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe~~~~~~~~~s~~~g~~~~~~~~~t~a~~l~~~~~~ 236 (322)
T PRK07476 158 GLEILEAL-PDVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVSMERGAAMHASLAAGRPVQVEEVPTLADSLGGGIGL 236 (322)
T ss_pred HHHHHHhC-cCCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEEECCchHHHHHHHcCCceeCCCCCCccccccccccC
Confidence 99999999 47999999999999999999999999999999999999887653 2322 12334444222
Q ss_pred --CCccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhh
Q 020528 233 --FIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVL 310 (325)
Q Consensus 233 --~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~ 310 (325)
..+..+.++.+|+.+.|+|+|++++++++++++|+++||+++++++++++... ...+++||+++|+++ -+.+ .
T Consensus 237 ~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~ve~a~a~~laal~~~~~--~~~~~~Vvvi~tGg~-~~~~--~ 311 (322)
T PRK07476 237 DNRYTFAMCRALLDDVVLLDEAEIAAGIRHAYREERLVVEGAGAVGIAALLAGKI--AARDGPIVVVVSGAN-IDME--L 311 (322)
T ss_pred CcHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHhcCceEeChhHHHHHHHHhCCc--ccCCCcEEEEECCCC-CCHH--H
Confidence 12334455788999999999999999999999999999999999999984211 123479999997654 3433 4
Q ss_pred hHHHHHH
Q 020528 311 FESVKKE 317 (325)
Q Consensus 311 ~~~~~~~ 317 (325)
+..++..
T Consensus 312 ~~~~~~~ 318 (322)
T PRK07476 312 HRRIING 318 (322)
T ss_pred HHHHHhh
Confidence 6666544
|
|
| >PRK08198 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-58 Score=439.33 Aligned_cols=291 Identities=25% Similarity=0.363 Sum_probs=254.9
Q ss_pred cchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHH
Q 020528 6 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGL 85 (325)
Q Consensus 6 ~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~al 85 (325)
..+++++...+++|||+++++|++..|++||+|+|++|||||||||++.+++.++.+++. .++||++|+||||+++
T Consensus 10 ~~a~~~i~~~i~~TPl~~~~~ls~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~al 85 (404)
T PRK08198 10 EEARERLKGVVRRTPLEYSRTLSELTGAEVYLKCENLQRTGSFKIRGAYNKIASLSEEER----ARGVVAASAGNHAQGV 85 (404)
T ss_pred HHHHHHHhccCCCCCceehhhHHHHhCCEEEEEECCCCCCCCCHHHHHHHHHHhccHhhc----CCEEEEECCCHHHHHH
Confidence 456788999999999999999998788899999999999999999999999998875543 2679999999999999
Q ss_pred HHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchH
Q 020528 86 AFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTG 165 (325)
Q Consensus 86 A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~ 165 (325)
|++|+.+|++|+||||++++..|+++++.+||+|+.++. +++++.+.+++++++. +++|++||+|+.+ ++||+|+|
T Consensus 86 A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~~~~~-~~g~~t~a 161 (404)
T PRK08198 86 AYAASLLGIKATIVMPETAPLSKVKATRSYGAEVVLHGD--VYDEALAKAQELAEET-GATFVHPFDDPDV-IAGQGTIG 161 (404)
T ss_pred HHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCCCCCccH-HHHHHHHH
Confidence 999999999999999999999999999999999999984 6899999999998886 7899999999987 78999999
Q ss_pred HHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCCC-----CcccccCCCCC---
Q 020528 166 PEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKPG-----PHKIQGIGAGF--- 233 (325)
Q Consensus 166 ~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~~-----~~~~~gl~~~~--- 233 (325)
+||++|+ +++|+||+|+|+||+++|++.+||+.+|++|||||||++++++. .+++. .+.+++++...
T Consensus 162 ~EI~~q~-~~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~g~~v~~~~~ 240 (404)
T PRK08198 162 LEILEDL-PDVDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQAEGAPAMPESLAAGRPVELESVDTIADGIAVKRPGD 240 (404)
T ss_pred HHHHHhC-CCCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEEEeCCChHHHHHHHcCCCEecCCCCccccccccCCcCH
Confidence 9999999 57999999999999999999999999999999999999998773 23331 23445665432
Q ss_pred CccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcch
Q 020528 234 IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSS 308 (325)
Q Consensus 234 ~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~ 308 (325)
.+..+.++++|+++.|+|+|+.++++++++++|+++||++|+++|+++++... .++++||+++|+ |+.+++.
T Consensus 241 ~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~g~~~e~sga~~lAal~~~~~~--~~~~~vv~vl~g-gn~~~~~ 312 (404)
T PRK08198 241 LTFEIIRELVDDVVTVSDEEIARAILLLLERAKLVVEGAGAVSVAALLSGKLD--VKGKKVVAVLSG-GNIDVLL 312 (404)
T ss_pred HHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCeEEehHHHHHHHHHHhchhh--cCCCeEEEEECC-CCCCHHH
Confidence 23344567899999999999999999999999999999999999999986532 467899999975 7766554
|
|
| >TIGR02079 THD1 threonine dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-58 Score=438.39 Aligned_cols=299 Identities=22% Similarity=0.299 Sum_probs=255.9
Q ss_pred cchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHH
Q 020528 6 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGL 85 (325)
Q Consensus 6 ~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~al 85 (325)
..+.+++...+++|||+++++|++.+|.+||+|+|++|||||||+|++.+++..+.+... .++||++|+||||+++
T Consensus 4 ~~a~~~i~~~i~~TPl~~~~~ls~~~g~~iy~K~E~~~ptGSfK~RgA~~~i~~l~~~~~----~~gvv~aSsGN~g~a~ 79 (409)
T TIGR02079 4 EAARKRLKEVVPHTPLQLNERLSEKYGANIYLKREDLQPVRSYKIRGAYNFLKQLSDAQL----AKGVVCASAGNHAQGF 79 (409)
T ss_pred HHHHHHHhCcCCCCCccccHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhh----CCEEEEECccHHHHHH
Confidence 457788999999999999999998788899999999999999999999999987543222 2569999999999999
Q ss_pred HHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE---EEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHh
Q 020528 86 AFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL---VLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYE 162 (325)
Q Consensus 86 A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v---~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~ 162 (325)
|++|+++|++|+||||++++..|+.+++.+||++ +.++ .+++++.+.+++++++. +++|++||+|+.+ ++||+
T Consensus 80 A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~vv~v~~~g--~~~~~a~~~a~~~~~~~-g~~~~~~~~~~~~-~~g~~ 155 (409)
T TIGR02079 80 AYACRHLGVHGTVFMPATTPKQKIDRVKIFGGEFIEIILVG--DTFDQCAAAAREHVEDH-GGTFIPPFDDPRI-IEGQG 155 (409)
T ss_pred HHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCCeeEEEEeC--CCHHHHHHHHHHHHHhc-CCEEeCCCCCHhH-hhhhH
Confidence 9999999999999999999999999999999974 4444 46899999999998886 7899999999987 78999
Q ss_pred chHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----CCcccccCCCCC
Q 020528 163 TTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKP-----GPHKIQGIGAGF 233 (325)
Q Consensus 163 t~~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~-----~~~~~~gl~~~~ 233 (325)
|+++||++|++..||+||+|+|+||+++|++.++|+.+|++|||||||++++++. .+++ ..+.++|++...
T Consensus 156 ti~~Ei~~q~~~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~g~~v~~ 235 (409)
T TIGR02079 156 TVAAEILDQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEPEGAPSMKASLEAGEVVTLDKIDNFVDGAAVKR 235 (409)
T ss_pred HHHHHHHHhcCCCCCEEEEEecHhHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCceecCCCCCeeccccCCC
Confidence 9999999999656999999999999999999999999999999999999998774 2432 234567776655
Q ss_pred Cc---cccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhh
Q 020528 234 IP---GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVL 310 (325)
Q Consensus 234 ~~---~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~ 310 (325)
++ +.+.+.++|+++.|+|+|+.++++++++++|+++||+||+++|+++++.++ .++++||+|+| ||+.+++.
T Consensus 236 ~g~~~~~~~~~~vd~vv~V~d~e~~~a~~~l~~~~gi~ve~agaa~lAa~~~~~~~--~~~~~Vv~ils-Ggn~d~~~-- 310 (409)
T TIGR02079 236 VGDLNFKALKDVPDEVTLVPEGAVCTTILDLYNLEGIVAEPAGALSIAALERLGEE--IKGKTVVCVVS-GGNNDIER-- 310 (409)
T ss_pred CcHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHhcCceecchHHHHHHHHHhhhhh--cCCCeEEEEEC-CCCCCHHH--
Confidence 33 223467899999999999999999999999999999999999999987543 46889999996 57766654
Q ss_pred hHHHHHH
Q 020528 311 FESVKKE 317 (325)
Q Consensus 311 ~~~~~~~ 317 (325)
+..+...
T Consensus 311 ~~~~~~~ 317 (409)
T TIGR02079 311 TEEIRER 317 (409)
T ss_pred HHHHHHH
Confidence 5555443
|
This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway. |
| >PRK06721 threonine synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-58 Score=428.83 Aligned_cols=296 Identities=24% Similarity=0.294 Sum_probs=250.8
Q ss_pred hhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHH
Q 020528 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAF 87 (325)
Q Consensus 8 ~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 87 (325)
...++++.+|+|||+++++|++..|.+||+|+|++|||||||||++.+++.++.++|. .+||++|+||||+|+|+
T Consensus 18 ~~~~~~l~~G~TPl~~l~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~a~~~g~-----~~vV~aSsGN~G~alA~ 92 (352)
T PRK06721 18 NTPDVSLMEGNTPLIPLLNISKQLGIQLYGKYEGANPTGSFKDRGMVMAVAKAKEEGS-----EAIICASTGNTSASAAA 92 (352)
T ss_pred CCCccccCcCCCCeeEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHH
Confidence 3445788899999999999987777899999999999999999999999999999886 68999999999999999
Q ss_pred HHHHcCCeEEEEecCCC-CHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHH
Q 020528 88 MAAAKGYRLIITMPASM-SLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGP 166 (325)
Q Consensus 88 ~a~~~g~~~~i~~p~~~-~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~ 166 (325)
+|+.+|++|+||||++. +..|+++++.+||+|+.+++ +++++.+.+++++++. ++++++ +.|+.+ ..||.++++
T Consensus 93 ~aa~~G~~~~vvvp~~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~-~~n~~~-~~G~~t~~~ 167 (352)
T PRK06721 93 YAARLGMKCIIVIPEGKIAHGKLAQAVAYGAEIISIEG--NFDDALKAVRNIAAEE-PITLVN-SVNPYR-IEGQKTAAF 167 (352)
T ss_pred HHHHCCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhC-Cceecc-CCCchh-hhhhhhHHH
Confidence 99999999999999974 88999999999999999985 5888999999998886 567665 457776 689999999
Q ss_pred HHHhhhCCCCCEEEEecCCchhHHHHH----HHHHhhC-CCcEEEEEecCCCccccCCCC---CCcccccCCCCCCcccc
Q 020528 167 EIWKGTGGKIDALVSGIGTGGTVTGAG----KYLKEHN-PEIKLYGVEPVESAVLSGGKP---GPHKIQGIGAGFIPGVL 238 (325)
Q Consensus 167 Ei~~ql~~~~D~iv~pvG~Gg~~aGi~----~~~k~~~-~~~~vigV~~~~~~~~~~~~~---~~~~~~gl~~~~~~~~~ 238 (325)
||++|+++.||+||+|+|+||+++|++ +.+|..+ |.+|||+|||++++++..+.. ..+..++++.+. |..+
T Consensus 168 Ei~eq~~~~~D~ivv~vG~GG~l~G~~~G~~~~lk~~~~~~~~vigVep~~~~~~~~g~~~~~~~tia~~l~~~~-~~~~ 246 (352)
T PRK06721 168 EICDQLQRAPDVLAIPVGNAGNITAYWKGFCEYEKEKGYKKPRIHGFEAEGAAAIVKGHVIDEPETIATAIRIGN-PASW 246 (352)
T ss_pred HHHHHhCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCeEEEEecCCCChHhhCCcCCCCCceeeccccCC-CCCH
Confidence 999999767999999999999999854 4555554 899999999999987765543 123345565443 2211
Q ss_pred ------ccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCC-CCCCEEEEEeCCCCCCCcchhhh
Q 020528 239 ------DVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE-NAGKLIVVVFPSFGERYLSSVLF 311 (325)
Q Consensus 239 ------~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~i~t~~g~~~~~~~~~ 311 (325)
...++|+++.|+|+|++++++++++++|+++||++|+++++++++++.+. .++++||+++||+|.||++.+.-
T Consensus 247 ~~~~~~~~~~~~~~~~V~d~e~~~a~~~la~~eGi~vepssgaalaa~~~~~~~~~~~~~~~Vv~v~~g~g~k~~~~~~~ 326 (352)
T PRK06721 247 SYAVEAAEQSHGEIDMVSDEEILHAYRLLAKSEGVFAEPGSNASLAGVMKHVQSGKIKKGETVVAVLTGNGLKDPDIAIS 326 (352)
T ss_pred HHHHHHHHhcCCEEEEECHHHHHHHHHHHHHhcCcccCchHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCcCchHHHhh
Confidence 23468999999999999999999999999999999999999999887643 46789999999999999987443
Q ss_pred HHH
Q 020528 312 ESV 314 (325)
Q Consensus 312 ~~~ 314 (325)
+.|
T Consensus 327 ~~~ 329 (352)
T PRK06721 327 SNT 329 (352)
T ss_pred hcc
Confidence 333
|
|
| >PRK07591 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-58 Score=439.01 Aligned_cols=290 Identities=21% Similarity=0.263 Sum_probs=252.8
Q ss_pred HHhhhhCCCCceecccccCCCC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHH
Q 020528 11 DVTELIGKTPLVYLNRIVDGCV-ARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMA 89 (325)
Q Consensus 11 ~i~~~~~~TPL~~~~~l~~~~~-~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a 89 (325)
.+++++|+|||+++++|++.+| .+||+|+|++|||||||||++.+++..|.+.|. ++|+++|+||||+|+|++|
T Consensus 82 ~v~l~eG~TPLv~~~~l~~~lG~~~l~~K~E~~nPtGSfKdRga~~~v~~A~~~g~-----~~vv~aSsGN~g~alA~~a 156 (421)
T PRK07591 82 PVDLGPGFTPLVKADRLARELGLKNLYIKDDSVNPTHSFKDRVVSVALTAARELGF-----TTVACASTGNLANSVAAHA 156 (421)
T ss_pred CCcCCCCCCcceEhHHHHHHhCCCcEEEEeCCCCCccChHHHHHHHHHHHHHHcCC-----CEEEEeCCCHHHHHHHHHH
Confidence 4788999999999999987777 589999999999999999999999999999986 6799999999999999999
Q ss_pred HHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHHH
Q 020528 90 AAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIW 169 (325)
Q Consensus 90 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~ 169 (325)
+++|++|+||||++++..|+.+++.+||+|+.+++ +++++.+.+++++++.+++++++++.||.. ++|++|+++||+
T Consensus 157 a~~Gl~~~I~vP~~~~~~k~~~~~~~GA~Vi~v~g--~~d~a~~~a~~~~~~~~~~~~~n~~~~p~~-ieG~~Tia~Ei~ 233 (421)
T PRK07591 157 ARAGLDSCVFIPADLEAGKIVGTLVYGPTLVAVDG--NYDDVNRLCSELANEHEGWGFVNINLRPYY-AEGSKTLGYEVA 233 (421)
T ss_pred HHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhcCCEEEecCCCCccc-ccchHHHHHHHH
Confidence 99999999999999999999999999999999996 588999999998887657889998778886 789999999999
Q ss_pred hhhCCC-CCEEEEecCCchhHHHHHHHHHhh-------CCCcEEEEEecCCCcccc----CCCC------CCcccccCCC
Q 020528 170 KGTGGK-IDALVSGIGTGGTVTGAGKYLKEH-------NPEIKLYGVEPVESAVLS----GGKP------GPHKIQGIGA 231 (325)
Q Consensus 170 ~ql~~~-~D~iv~pvG~Gg~~aGi~~~~k~~-------~~~~~vigV~~~~~~~~~----~~~~------~~~~~~gl~~ 231 (325)
+|+++. ||+||+|+|+||+++|++++|+++ .+.+|||+|||++++++. .+.. ..+..+++..
T Consensus 234 eQl~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~Vq~~g~~~~~~~~~~g~~~~~~~~~~tia~~l~~ 313 (421)
T PRK07591 234 EQLGWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGAQAEGCSPIAQAFKEGRDVVKPVKPNTIAKSLAI 313 (421)
T ss_pred HHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEEecCCCCHHHHHHHcCCCcccCCCCCchhhheec
Confidence 999755 999999999999999999999998 578999999999987664 2221 1233445543
Q ss_pred CCCcc-----ccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCC-CCCCEEEEEeCCCCCCC
Q 020528 232 GFIPG-----VLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE-NAGKLIVVVFPSFGERY 305 (325)
Q Consensus 232 ~~~~~-----~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~i~t~~g~~~ 305 (325)
+.... ...++..+.++.|+|+|++++++.|++++|+++||++|+++|+++++.+++. .++++||+++||+|+||
T Consensus 314 ~~p~~~~~~~~~i~~~~g~~v~Vsd~ei~~a~~~la~~eGi~~epssaaalAal~~l~~~g~i~~~~~VV~i~tG~G~kd 393 (421)
T PRK07591 314 GNPADGPYALDIARRTGGAIEDVTDEEIIEGIKLLARTEGIFTETAGGVTVAVLKKLVEAGKIDPDEETVVYITGNGLKT 393 (421)
T ss_pred CCCCCcHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhcCCeeecchHHHHHHHHHHHHHhCCCCCCCeEEEEeCCCccCC
Confidence 33111 1223556789999999999999999999999999999999999999988765 47889999999999999
Q ss_pred cch
Q 020528 306 LSS 308 (325)
Q Consensus 306 ~~~ 308 (325)
++.
T Consensus 394 ~~~ 396 (421)
T PRK07591 394 LEA 396 (421)
T ss_pred HHH
Confidence 875
|
|
| >TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-58 Score=443.44 Aligned_cols=296 Identities=24% Similarity=0.325 Sum_probs=257.3
Q ss_pred hHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHH
Q 020528 9 AKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFM 88 (325)
Q Consensus 9 ~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~ 88 (325)
..++.+.+++|||+++++|++.+|++||+|+|++|||||||+|+|.+.+..+.+... .++||++|+||||+++|++
T Consensus 8 ~~~v~~~i~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~----~~gVV~aSaGNha~~vA~a 83 (499)
T TIGR01124 8 TARVYEAAQETPLQKAAKLSERLGNRILIKREDLQPVFSFKLRGAYNKMAQLSPEQK----ARGVIAASAGNHAQGVAFS 83 (499)
T ss_pred HhHhhCccCCCCeeehHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHhhHHhc----CCEEEEECCCHHHHHHHHH
Confidence 357788999999999999998888899999999999999999999999988743322 2579999999999999999
Q ss_pred HHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHH
Q 020528 89 AAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEI 168 (325)
Q Consensus 89 a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei 168 (325)
|+++|++|+||||.+++..|+++++.+||+|+.++. +++++.+.+++++++. +++|++||+||.+ ++||+|+|+||
T Consensus 84 a~~~Gi~~~IvmP~~tp~~Kv~~~r~~GA~Vvl~g~--~~d~a~~~a~~la~~~-g~~~i~p~~~~~~-i~G~gtig~EI 159 (499)
T TIGR01124 84 AARLGLKALIVMPETTPDIKVDAVRGFGGEVVLHGA--NFDDAKAKAIELSQEK-GLTFIHPFDDPLV-IAGQGTLALEI 159 (499)
T ss_pred HHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEeCc--CHHHHHHHHHHHHHhc-CCEeeCCCCChHH-HHhhHHHHHHH
Confidence 999999999999999999999999999999999984 6899999999998886 7899999999987 79999999999
Q ss_pred HhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----CCcccccCCCCCC---cc
Q 020528 169 WKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKP-----GPHKIQGIGAGFI---PG 236 (325)
Q Consensus 169 ~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~-----~~~~~~gl~~~~~---~~ 236 (325)
++|++.++|+||+|+|+||+++|++.++|..+|++|||||||++++++. .+++ ..+.++|++...+ ++
T Consensus 160 ~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVIgVep~~~~~~~~s~~~g~~~~~~~~~t~adgiav~~~g~~~~ 239 (499)
T TIGR01124 160 LRQVANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGVEPTDSDCMKQALDAGEPVDLDQVGLFADGVAVKRVGDETF 239 (499)
T ss_pred HHhCCCCCCEEEEccCccHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCceeCCCCCCccCcccCCCccHHHH
Confidence 9999668999999999999999999999999999999999999998774 2332 2345577765442 34
Q ss_pred ccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhHHHH
Q 020528 237 VLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFESVK 315 (325)
Q Consensus 237 ~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~~~~ 315 (325)
.+.++++|+++.|+|+|+.++++++++++|+++||++|+++|+++++.++...++++||+|+|| |+.++++ +..+.
T Consensus 240 ~~~~~~vd~vv~V~d~ei~~ai~~l~~~~gii~EpagA~~lAal~~~~~~~~~~~~~vv~i~sG-~n~~~~~--l~~~~ 315 (499)
T TIGR01124 240 RLCQQYLDDIVTVDTDEVCAAIKDLFEDTRAVAEPAGALALAGLKKYVALHGIRGQTLVAILSG-ANMNFHR--LRYVS 315 (499)
T ss_pred HHHHHhCCEEEEECHHHHHHHHHHHHHhcCcEEechHHHHHHHHHHhhhhcCCCCCeEEEEECC-CCCCHHH--HHHHH
Confidence 4556889999999999999999999999999999999999999999876654468899999965 5655554 44443
|
Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain. |
| >PRK07334 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-59 Score=440.50 Aligned_cols=297 Identities=23% Similarity=0.278 Sum_probs=257.9
Q ss_pred ccchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHH
Q 020528 5 KSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIG 84 (325)
Q Consensus 5 ~~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 84 (325)
...+.+++...+++|||+++++|+..+|.+||+|+|++|||||||||++.+++.++.+... .++||++|+||||+|
T Consensus 10 i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~~~~~~~----~~~vv~aSsGN~g~a 85 (403)
T PRK07334 10 IRAAAARLAGQVLRTPCVHSRTLSQITGAEVWLKFENLQFTASFKERGALNKLLLLTEEER----ARGVIAMSAGNHAQG 85 (403)
T ss_pred HHHHHHHHhCCCCCCCccchHHHHHhhCCeEEEEeccCCCCCCchHHHHHHHHHhcCHHHh----CCcEEEECCcHHHHH
Confidence 4567889999999999999999987778899999999999999999999999998754432 146999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhch
Q 020528 85 LAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETT 164 (325)
Q Consensus 85 lA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~ 164 (325)
+|++|+.+|++|+||||.++++.|+++++.+||+|+.+++ +++++.+.+++++++. +++|++||+|+.+ ++||+|+
T Consensus 86 lA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~--~~~~~~~~a~~l~~~~-~~~~~~~~~~~~~-~~g~~t~ 161 (403)
T PRK07334 86 VAYHAQRLGIPATIVMPRFTPTVKVERTRGFGAEVVLHGE--TLDEARAHARELAEEE-GLTFVHPYDDPAV-IAGQGTV 161 (403)
T ss_pred HHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECc--CHHHHHHHHHHHHHhc-CCEecCCCCCHHH-HHhHHHH
Confidence 9999999999999999999999999999999999999984 6889999999998886 7899999999987 6999999
Q ss_pred HHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccC---CC----CCCcccccCCCC---CC
Q 020528 165 GPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSG---GK----PGPHKIQGIGAG---FI 234 (325)
Q Consensus 165 ~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~---~~----~~~~~~~gl~~~---~~ 234 (325)
++||++|+ +.||+||+|+|+||+++|++++||..+|++||++|||++++++.. +. ...+.+++|+.+ ..
T Consensus 162 ~~Ei~~q~-~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ve~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~ 240 (403)
T PRK07334 162 ALEMLEDA-PDLDTLVVPIGGGGLISGMATAAKALKPDIEIIGVQTELYPSMYAAIKGVALPCGGSTIAEGIAVKQPGQL 240 (403)
T ss_pred HHHHHhcC-CCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHhCCCccCCCCCccceecCCCccHH
Confidence 99999999 579999999999999999999999999999999999999987742 21 123566788743 34
Q ss_pred ccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhHHH
Q 020528 235 PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFESV 314 (325)
Q Consensus 235 ~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~~~ 314 (325)
|+.+.++.+|+++.|+|+|+++++++|++++|+++||++|+++++++++.+. .++++||+++|| |+.+.+ ++..+
T Consensus 241 ~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~v~~s~a~~~aa~~~~~~~--~~~~~vv~i~~g-gn~d~~--~l~~i 315 (403)
T PRK07334 241 TLEIVRRLVDDILLVSEADIEQAVSLLLEIEKTVVEGAGAAGLAALLAYPER--FRGRKVGLVLSG-GNIDTR--LLANV 315 (403)
T ss_pred HHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCCEEechHHHHHHHHHhCchh--cCCCeEEEEECC-CCCCHH--HHHHH
Confidence 5666778899999999999999999999999999999999999999876543 367899999987 554444 34444
Q ss_pred H
Q 020528 315 K 315 (325)
Q Consensus 315 ~ 315 (325)
+
T Consensus 316 l 316 (403)
T PRK07334 316 L 316 (403)
T ss_pred H
Confidence 3
|
|
| >PRK08639 threonine dehydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-58 Score=439.60 Aligned_cols=301 Identities=23% Similarity=0.328 Sum_probs=256.0
Q ss_pred ccchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHH
Q 020528 5 KSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIG 84 (325)
Q Consensus 5 ~~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 84 (325)
...+++++.+.+++|||+++++|++..|++||+|+|++|||||||||+|.+++.++.+... .++||++|+||||++
T Consensus 12 i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~l~~K~E~~~ptGSfK~RgA~~~i~~l~~~~~----~~~Vv~aSsGN~g~a 87 (420)
T PRK08639 12 IDKAAKRLKDVVPETPLQRNDYLSEKYGANVYLKREDLQPVRSYKLRGAYNAISQLSDEEL----AAGVVCASAGNHAQG 87 (420)
T ss_pred HHHHHHHHhCcCcCCCccchHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhh----CCEEEEECccHHHHH
Confidence 3567789999999999999999988778899999999999999999999999988533221 257999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC-CCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhc
Q 020528 85 LAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD-PARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYET 163 (325)
Q Consensus 85 lA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t 163 (325)
+|++|+.+|++|+||||++++..|+.+++.+||+|+.+. ...+++++.+.+.+++++. +++|++||+|+.+ ++||+|
T Consensus 88 lA~~a~~~G~~~~IvmP~~~~~~k~~~~r~~GA~vv~v~~~g~~~~~a~~~a~~~a~~~-g~~~~~~~~~~~~-~~G~~t 165 (420)
T PRK08639 88 VAYACRHLGIPGVIFMPVTTPQQKIDQVRFFGGEFVEIVLVGDTFDDSAAAAQEYAEET-GATFIPPFDDPDV-IAGQGT 165 (420)
T ss_pred HHHHHHHcCCCEEEEECCCChHHHHHHHHHcCCCeeEEEEeCcCHHHHHHHHHHHHHhc-CCcccCCCCChhH-hcchhH
Confidence 999999999999999999999999999999999744321 1246899999999998886 7999999999987 789999
Q ss_pred hHHHHHhhhCCC--CCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----CCcccccCCCC
Q 020528 164 TGPEIWKGTGGK--IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKP-----GPHKIQGIGAG 232 (325)
Q Consensus 164 ~~~Ei~~ql~~~--~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~-----~~~~~~gl~~~ 232 (325)
+++||++|+++. ||+||+|+|+||+++|++.++|+..|++|||||||++++++. .+.+ ..+.++|++..
T Consensus 166 ig~EI~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~gi~v~ 245 (420)
T PRK08639 166 VAVEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEPAGAASMKAALEAGKPVTLEKIDKFVDGAAVA 245 (420)
T ss_pred HHHHHHHhccccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCCCcHHHHHhCCCceeCCCCCCeecccccC
Confidence 999999999655 999999999999999999999999999999999999998764 2332 23456777655
Q ss_pred CC---ccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchh
Q 020528 233 FI---PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSV 309 (325)
Q Consensus 233 ~~---~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~ 309 (325)
.+ ++.+.++++|+++.|+|+|+.++++++++++|+++||++|+++|+++++.+. .++++||+|+| ||+.+++.
T Consensus 246 ~~g~~~~~~~~~~vd~~v~V~d~ei~~a~~~l~~~~gi~~e~sga~~lAal~~~~~~--~~~~~vv~v~s-Ggn~d~~~- 321 (420)
T PRK08639 246 RVGDLTFEILKDVVDDVVLVPEGAVCTTILELYNKEGIVAEPAGALSIAALELYKDE--IKGKTVVCVIS-GGNNDIER- 321 (420)
T ss_pred CccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCceecchHHHHHHHHHhhhhh--cCCCeEEEEeC-CCCCCHHH-
Confidence 43 2334567899999999999999999999999999999999999999886543 37789999996 57766654
Q ss_pred hhHHHHH
Q 020528 310 LFESVKK 316 (325)
Q Consensus 310 ~~~~~~~ 316 (325)
+.++..
T Consensus 322 -~~~~~~ 327 (420)
T PRK08639 322 -MPEIKE 327 (420)
T ss_pred -HHHHHH
Confidence 555543
|
|
| >TIGR02991 ectoine_eutB ectoine utilization protein EutB | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-58 Score=422.27 Aligned_cols=285 Identities=20% Similarity=0.262 Sum_probs=246.4
Q ss_pred cchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHH
Q 020528 6 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGL 85 (325)
Q Consensus 6 ~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~al 85 (325)
..+++++...+++|||+++++|++..|.+||+|+|++|||||||||++.+++..+.+... ..+||++|+||||+|+
T Consensus 7 ~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~al 82 (317)
T TIGR02991 7 ERAAARISGRVEETPLVESPSLSELCGVPVHLKLEHRQTTGSFKLRGATNAVLSLSDTQR----AAGVVAASTGNHGRAL 82 (317)
T ss_pred HHHHHHHhCcCCCCCceechhhHHhhCCeEEEEeccCCCCCCcHHHHHHHHHHhhhHhcc----CCeEEEECCCHHHHHH
Confidence 457889999999999999999987778899999999999999999999999988764322 2569999999999999
Q ss_pred HHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchH
Q 020528 86 AFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTG 165 (325)
Q Consensus 86 A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~ 165 (325)
|++|+++|++|+||||+++++.|+++++.+||+|+.++. +++++.+.+++++++. +++|++||+|+.+ ++||+|++
T Consensus 83 A~~a~~~G~~~~v~~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~-~~g~~t~a 158 (317)
T TIGR02991 83 AYAAAEEGVRATICMSELVPQNKVDEIRRLGAEVRIVGR--SQDDAQEEVERLVADR-GLTMLPPFDHPDI-VAGQGTLG 158 (317)
T ss_pred HHHHHHhCCCEEEEcCCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEeeCCCCChHH-HhhHHHHH
Confidence 999999999999999999999999999999999999995 5788888899988876 7899999999987 78999999
Q ss_pred HHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----CCcccccCC----C-
Q 020528 166 PEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKP-----GPHKIQGIG----A- 231 (325)
Q Consensus 166 ~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~-----~~~~~~gl~----~- 231 (325)
+||++|+ +++|+||+|+|+||+++|++++||+++|.+|||+|||++++++. .+++ .++.+++++ .
T Consensus 159 ~Ei~~q~-~~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~~l~~g~~~~ 237 (317)
T TIGR02991 159 LEVVEQM-PDLATVLVPLSGGGLASGVAMAVKAARPDTRVIGVSMERGAAMKASLQAGRPVLVAELPTLADSLGGGIGLD 237 (317)
T ss_pred HHHHHhC-CCCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEEEECCchHHHHHHHcCCcccCCCCCChhhhhhhccCCC
Confidence 9999999 47899999999999999999999999999999999999887764 2332 234455442 1
Q ss_pred CCCccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCC
Q 020528 232 GFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFG 302 (325)
Q Consensus 232 ~~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g 302 (325)
...++.+.++++|+++.|+|+|+++++++|++++|+++||++|+++|++.+.. ...+++||+++|+++
T Consensus 238 ~~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~g~~ve~s~a~~~Aal~~~~---~~~~~~vvvvltG~n 305 (317)
T TIGR02991 238 NRVTFAMCKALLDEIVLVSEAEIAAGIRHAYAEEREIVEGAGAVGIAALLAGK---IKNPGPCAVIVSGRN 305 (317)
T ss_pred CHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhCCcEEcchHHHHHHHHHcCc---cccCCcEEEEeCCCC
Confidence 12345566788999999999999999999999999999999999999997421 124678999997654
|
Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases. |
| >PRK06815 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-58 Score=425.39 Aligned_cols=289 Identities=25% Similarity=0.306 Sum_probs=250.4
Q ss_pred ccchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHH
Q 020528 5 KSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIG 84 (325)
Q Consensus 5 ~~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 84 (325)
....++++.+.+++|||+++++|+...|.+||+|+|++|||||||||++.+++..+.+... .++||++|+||||+|
T Consensus 7 i~~a~~~~~~~i~~TPLv~~~~l~~~~g~~i~~K~E~~nptgS~KdR~a~~~~~~l~~~~~----~~~vv~aSsGN~g~a 82 (317)
T PRK06815 7 ILEAHQRLRPQVRVTPLEHSPLLSQHTGCEVYLKCEHLQHTGSFKFRGASNKLRLLNEAQR----QQGVITASSGNHGQG 82 (317)
T ss_pred HHHHHHHhhCCCCCCCccccHhHHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhhc----CceEEEECCChHHHH
Confidence 3567788999999999999999987778899999999999999999999999987643322 256999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhch
Q 020528 85 LAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETT 164 (325)
Q Consensus 85 lA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~ 164 (325)
+|++|+.+|++|+||||.++++.|+.+++.+||+|+.+++ +++++...+++++++. +++|++||+|+.+ +.||+++
T Consensus 83 lA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~-~~g~~t~ 158 (317)
T PRK06815 83 VALAAKLAGIPVTVYAPEQASAIKLDAIRALGAEVRLYGG--DALNAELAARRAAEQQ-GKVYISPYNDPQV-IAGQGTI 158 (317)
T ss_pred HHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEecCCCChhh-hcchhHH
Confidence 9999999999999999999999999999999999999996 4788888888888776 7889999999886 6899999
Q ss_pred HHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccC----CCC-----CCcccccCCCCCCc
Q 020528 165 GPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSG----GKP-----GPHKIQGIGAGFIP 235 (325)
Q Consensus 165 ~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~----~~~-----~~~~~~gl~~~~~~ 235 (325)
++||++|++ .||+||+|+|+||+++|++++||+.+|++|||||||++++++.. +.+ ..+.+++++.+..|
T Consensus 159 a~Ei~~q~~-~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~ 237 (317)
T PRK06815 159 GMELVEQQP-DLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWPANSPSLYTSLEAGEIVEVAEQPTLSDGTAGGVEP 237 (317)
T ss_pred HHHHHHhcC-CCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCcccCCCCCChhhhhccCCcc
Confidence 999999994 69999999999999999999999999999999999999987742 322 12355666443322
Q ss_pred ----cccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCC
Q 020528 236 ----GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGER 304 (325)
Q Consensus 236 ----~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~ 304 (325)
..+..+++|+++.|+|+|+++++++|++++|+++||++|+++++++++.++ .++++||+|+||++.+
T Consensus 238 ~~~~~~~~~~~~~~~~~V~d~e~~~a~~~la~~~gi~vepssg~alaa~~~~~~~--~~~~~vv~i~tG~~~~ 308 (317)
T PRK06815 238 GAITFPLCQQLIDQKVLVSEEEIKEAMRLIAETDRWLIEGAAGVALAAALKLAPR--YQGKKVAVVLCGKNIV 308 (317)
T ss_pred cHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCCeEecHHHHHHHHHHhCchh--cCCCcEEEEECCCCCC
Confidence 234457889999999999999999999999999999999999999987655 3678999999887754
|
|
| >PRK07409 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-58 Score=428.32 Aligned_cols=289 Identities=24% Similarity=0.294 Sum_probs=249.3
Q ss_pred hHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHH
Q 020528 9 AKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFM 88 (325)
Q Consensus 9 ~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~ 88 (325)
..++++++|+|||++++.|+...|.+||+|+|++|||||||||++.+++..+.++|. .+||++|+||||+|+|++
T Consensus 22 ~~~~~l~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~-----~~iv~aSsGN~g~alA~~ 96 (353)
T PRK07409 22 TPVVTLGEGNTPLIPAPNLSELLGVEVYVKYEGLNPTGSFKDRGMTMAVTKAKEEGA-----KAVICASTGNTSASAAAY 96 (353)
T ss_pred cCcccCCCCCCCEEEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHH
Confidence 344788999999999999987677899999999999999999999999999998886 679999999999999999
Q ss_pred HHHcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHH
Q 020528 89 AAAKGYRLIITMPAS-MSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPE 167 (325)
Q Consensus 89 a~~~g~~~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~E 167 (325)
|+.+|++|+||||++ .+..|+++++.+||+|+.+++ +++++.+.+++++++. +++++++ .|+.+ +.||.++++|
T Consensus 97 a~~~G~~~~ivvP~~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~l~~~~-~~~~~~~-~n~~~-~~g~~t~~~E 171 (353)
T PRK07409 97 AARAGLKAFVLIPEGKIALGKLAQAVMYGAEIIQIDG--NFDDALEIVRELAEKY-PVTLVNS-VNPYR-IEGQKTAAFE 171 (353)
T ss_pred HHHcCCCEEEEEcCCCCchhhHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CceecCC-CCchh-hhhHHHHHHH
Confidence 999999999999998 689999999999999999996 5889999999988876 4777775 58887 6899999999
Q ss_pred HHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCC------CcEEEEEecCCCccccCCCCC---CcccccCCCCCCcccc
Q 020528 168 IWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNP------EIKLYGVEPVESAVLSGGKPG---PHKIQGIGAGFIPGVL 238 (325)
Q Consensus 168 i~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~------~~~vigV~~~~~~~~~~~~~~---~~~~~gl~~~~~~~~~ 238 (325)
|++|+...||+||+|+|+||+++|++++|++..+ .+|||+|||.+++++..+.+. .+..++++.+. |..+
T Consensus 172 I~~q~~~~~d~iv~~vG~GG~~~Gi~~g~~~~~~~~~~~~~~kvigVep~g~~~~~~g~~~~~~~ti~~~l~~~~-~~~~ 250 (353)
T PRK07409 172 IVDALGDAPDYHCIPVGNAGNITAYWKGYKEYHQDGKSTKLPRMMGFQAAGAAPIVRGEPVKNPETIATAIRIGN-PASW 250 (353)
T ss_pred HHHHhCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCccCCCeEEEEecCCCChHhhCCcCCCCcceeeeeecCC-CCCH
Confidence 9999966799999999999999999999998754 489999999999877655432 22334554332 3332
Q ss_pred c------cccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCC-CCCCEEEEEeCCCCCCCcch
Q 020528 239 D------VNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE-NAGKLIVVVFPSFGERYLSS 308 (325)
Q Consensus 239 ~------~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~i~t~~g~~~~~~ 308 (325)
. ....++.+.|+|+|++++++++++++|+++||++|+++++++++.+++. .++++||+++||+|+||+++
T Consensus 251 ~~~~~~~~~~~~~~v~Vsd~e~~~a~~~l~~~egi~v~pssa~alaa~~~~~~~~~~~~~~~VV~i~tg~g~k~~~~ 327 (353)
T PRK07409 251 DKAVAARDESGGLIDAVTDEEILEAYRLLARKEGVFCEPASAASVAGLLKAIRAGKIPEGSTVVCTLTGNGLKDPDT 327 (353)
T ss_pred HHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhCCceeCchHHHHHHHHHHHHHcCCCCCCCcEEEEecCccccchHH
Confidence 2 2345679999999999999999999999999999999999999877643 46789999999999999987
|
|
| >PRK02991 D-serine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-58 Score=433.71 Aligned_cols=300 Identities=21% Similarity=0.230 Sum_probs=253.6
Q ss_pred hhCCCCceecccccCCCC--------ceEEEEeCCCCC-CCChhhHHHHHHHHH-----HHHhCCCCCCC----------
Q 020528 15 LIGKTPLVYLNRIVDGCV--------ARIAAKLEMMEP-CSSVKDRIGYSMIAD-----AEEKGLIRPGE---------- 70 (325)
Q Consensus 15 ~~~~TPL~~~~~l~~~~~--------~~l~~K~E~~np-tGS~K~R~a~~~~~~-----a~~~g~~~~g~---------- 70 (325)
++++|||++++.++..+| .+||+|+|++|| |||||+|++.+++.. +++.|.+.++.
T Consensus 72 ~~~~TPL~~~~~l~~~~g~~~~~~~~~~V~lK~E~~np~tGSFK~RGA~~~i~~l~~~~a~~~G~~~~~~~~~~l~~~~~ 151 (441)
T PRK02991 72 GIIESPLVAIPAMQKALEKEYGQPISGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLDDDYSKLASPEF 151 (441)
T ss_pred CccCCCceehHHHHHHhcccccCCcCceEEEEEcCCCCCcCChHHHHHHHHHHHhhHHHHHHhCCCCcCcchhhhcchhh
Confidence 389999999999886544 699999999999 999999999998865 56778776653
Q ss_pred ------eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCC
Q 020528 71 ------SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPN 144 (325)
Q Consensus 71 ------~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~ 144 (325)
.+||++|+||||+|+|++|+.+|++|+||||++++..|+++++.|||+|+.+++ +++++.+.+++++++.++
T Consensus 152 ~~~~~~~~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~~~K~~~ir~~GAeVi~~~~--~~~~a~~~A~~la~~~~~ 229 (441)
T PRK02991 152 RQFFSQYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARQWKKDKLRSHGVTVVEYEG--DYGVAVEEGRKAAESDPN 229 (441)
T ss_pred hhhccCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhcCC
Confidence 479999999999999999999999999999999999999999999999999995 689999999999888656
Q ss_pred eEEeCCCCCCcchHhHHhchHHHHHhhhCC--------CCCEEEEecCCchhHHHHHHHHHhh-CCCcEEEEEecCCCcc
Q 020528 145 SYVLQQFENPANPKIHYETTGPEIWKGTGG--------KIDALVSGIGTGGTVTGAGKYLKEH-NPEIKLYGVEPVESAV 215 (325)
Q Consensus 145 ~~~~~~~~n~~~~~~g~~t~~~Ei~~ql~~--------~~D~iv~pvG~Gg~~aGi~~~~k~~-~~~~~vigV~~~~~~~ 215 (325)
++|+++++++.+ ++||+|+++||++|+.+ .||+||+|+|+||+++|++++||+. .|++|||+|||+++++
T Consensus 230 ~~~~~~~~~~~~-iaG~~Tig~EI~eQl~~~~~~vD~~~Pd~VvvpvGgGGliaGia~~lk~~~~~~~kVigVEp~ga~~ 308 (441)
T PRK02991 230 CYFIDDENSRTL-FLGYAVAGLRLKAQLAEQGIVVDADHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPC 308 (441)
T ss_pred eEeCCCCCchhH-HHhHHHHHHHHHHHhhhccCccccCCCCEEEEEeCccHHHHHHHHHHHHhcCCCCEEEEEecCCChH
Confidence 899999877765 89999999999999952 2679999999999999999999997 6889999999999976
Q ss_pred cc----CCCC-----------CCcccccCCCCCC---ccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHH
Q 020528 216 LS----GGKP-----------GPHKIQGIGAGFI---PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAAT 277 (325)
Q Consensus 216 ~~----~~~~-----------~~~~~~gl~~~~~---~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~ 277 (325)
+. .+++ ..+.++|++.+.+ ++.+.++.+|+++.|+|+|+++++++|++++|+++||++|+++
T Consensus 309 ~~~s~~~G~~~~~~~~~~g~~~~Tiadgl~~~~~~~~~~~~~~~~vd~~v~VsD~ei~~a~~~L~~~~gi~vEpS~Aaal 388 (441)
T PRK02991 309 MLLGLMTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLDGVYTVSDETLYRLLGLLADTEGIRLEPSALAGM 388 (441)
T ss_pred HHHHHhcCCCcceeccccCCCCcchhhhhcCCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCceeeHHHHHHH
Confidence 53 2331 2245577776543 2334457899999999999999999999999999999999999
Q ss_pred HHHHHHHhcCC-------C---CCCEEEEEeCCCCCCCcchhhhHHHHHHhc
Q 020528 278 AAAIQIAKRPE-------N---AGKLIVVVFPSFGERYLSSVLFESVKKEAE 319 (325)
Q Consensus 278 aa~~~~~~~~~-------~---~~~~vv~i~t~~g~~~~~~~~~~~~~~~~~ 319 (325)
|+++++.++.. . ++++||++.|+|..++.+ .++++++...
T Consensus 389 Aa~~~l~~~~~~~~~~~l~~~~~~~~vv~~~~gg~~~~~~--~~~~~~~~~~ 438 (441)
T PRK02991 389 AGPVRVCASVAYLQRHGLSEQLKNATHLVWATGGSMVPEE--EMEQYLAKGR 438 (441)
T ss_pred HHHHHHHhCHHHHHHcCCccccCCCEEEEEECCCCCCCHH--HHHHHHHhhh
Confidence 99987655321 1 578999999988887655 4666666543
|
|
| >PRK08813 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-58 Score=420.85 Aligned_cols=284 Identities=24% Similarity=0.291 Sum_probs=246.6
Q ss_pred cchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHH
Q 020528 6 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGL 85 (325)
Q Consensus 6 ~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~al 85 (325)
...+++|...+++|||++++.+ +||+|+|++|||||||||++.+++.++.+.|.. +.||++|+||||.|+
T Consensus 27 ~~A~~~i~~~i~~TPL~~~~~l------~v~lK~E~~nptGSfK~RgA~~~l~~a~~~~~~----~~VV~aSsGN~G~al 96 (349)
T PRK08813 27 LAAQARLRRYLSPTPLHYAERF------GVWLKLENLQRTGSYKVRGALNALLAGLERGDE----RPVICASAGNHAQGV 96 (349)
T ss_pred HHHHHHHhCcCCCCCeEECCCC------cEEEEecCCCCcCCCHHHHHHHHHHHHHHcCCC----CeEEEECCCHHHHHH
Confidence 4567899999999999998765 499999999999999999999999999998863 469999999999999
Q ss_pred HHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchH
Q 020528 86 AFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTG 165 (325)
Q Consensus 86 A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~ 165 (325)
|++|+.+|++|+||||.++++.|+.+++.|||+|+.+++ +++++.+.+++++++. +++|++||+|+.+ ++||+|++
T Consensus 97 A~aa~~~Gi~~~IvvP~~~~~~K~~~i~~~GAeVv~~g~--~~~~a~~~a~~la~~~-g~~~v~~~~np~~-i~G~~Tig 172 (349)
T PRK08813 97 AWSAYRLGVQAITVMPHGAPQTKIAGVAHWGATVRQHGN--SYDEAYAFARELADQN-GYRFLSAFDDPDV-IAGQGTVG 172 (349)
T ss_pred HHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEcCccCChHH-HHHHHHHH
Confidence 999999999999999999999999999999999999985 6899999999999886 7999999999997 78999999
Q ss_pred HHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccC---CC-----CCCcccccCCCCC---C
Q 020528 166 PEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSG---GK-----PGPHKIQGIGAGF---I 234 (325)
Q Consensus 166 ~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~---~~-----~~~~~~~gl~~~~---~ 234 (325)
+||++|. ||+||+|+|+||+++|+++++|+ +.+|||||||++++++.. +. +..+.++|++... .
T Consensus 173 ~EI~e~~---pD~VvvpvGgGGliaGia~~lk~--~~~rVigVqpega~~~~~s~~g~~~~~~~~~tiadgl~~~~p~~~ 247 (349)
T PRK08813 173 IELAAHA---PDVVIVPIGGGGLASGVALALKS--QGVRVVGAQVEGVDSMARAIRGDLREIAPVATLADGVKVKIPGFL 247 (349)
T ss_pred HHHHcCC---CCEEEEEeCccHHHHHHHHHHhc--CCCEEEEEEECCCchHHHHHcCCCcccCCCCceecccccCCcchh
Confidence 9999873 79999999999999999999996 579999999999987531 22 2235667776432 3
Q ss_pred ccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhHHH
Q 020528 235 PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFESV 314 (325)
Q Consensus 235 ~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~~~ 314 (325)
++.+.++.+|+++.|+|+|+.+++++|++++|+++||++|+++|+++++ ++++|++|+| |||.++++ +..+
T Consensus 248 ~~~i~~~~vd~vv~Vsd~ei~~a~~~l~~~~gl~vE~aga~alAa~~~~------~~~~v~~vls-GgN~d~~~--~~~~ 318 (349)
T PRK08813 248 TRRLCSSLLDDVVIVREAELRETLVRLALEEHVIAEGAGALALAAGRRV------SGKRKCAVVS-GGNIDATV--LATL 318 (349)
T ss_pred HHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEEEcHHHHHHHHHHh------CCCCEEEEEC-CCCCCHHH--HHHH
Confidence 4455667899999999999999999999999999999999999998763 4568999995 56765554 5555
Q ss_pred HHH
Q 020528 315 KKE 317 (325)
Q Consensus 315 ~~~ 317 (325)
+..
T Consensus 319 ~~~ 321 (349)
T PRK08813 319 LSE 321 (349)
T ss_pred HHh
Confidence 543
|
|
| >PLN02569 threonine synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-58 Score=437.49 Aligned_cols=292 Identities=19% Similarity=0.174 Sum_probs=251.2
Q ss_pred HHHhhhhCCCCceecccccCC-CC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHH
Q 020528 10 KDVTELIGKTPLVYLNRIVDG-CV-ARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAF 87 (325)
Q Consensus 10 ~~i~~~~~~TPL~~~~~l~~~-~~-~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 87 (325)
..+++++|+|||+++++|++. +| .+||+|+|++|||||||||++.+.+..+.+.|........|+++|+||||.|+|+
T Consensus 125 ~~vsl~eG~TPLv~~~~l~~~~~G~~~l~~K~E~~nPTGSFKDRga~~~vs~a~~~g~~~~~~~~Vv~ASSGN~GaAlAa 204 (484)
T PLN02569 125 DIVSLFEGNSNLFWAERLGKEFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMAKPVVGVGCASTGDTSAALSA 204 (484)
T ss_pred cceecCCCCCceeEhhhhhHhhcCCccEEEEECCCCCCcCHHHHHHHHHHHHHHHhhhccCCccEEEEeCCcHHHHHHHH
Confidence 348899999999999999876 66 4899999999999999999999999999887753211257999999999999999
Q ss_pred HHHHcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHH
Q 020528 88 MAAAKGYRLIITMPAS-MSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGP 166 (325)
Q Consensus 88 ~a~~~g~~~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~ 166 (325)
+|+.+|++|+||+|++ .+..|+.+++.+||+|+.+++ +++++.+.+++++++. ++|+++++ |+.+ ++||+|+++
T Consensus 205 yaa~~Gl~~~I~vP~~~~~~~k~~qi~a~GA~Vi~v~g--~~d~a~~~a~e~~~~~-~~~~~n~~-Np~~-ieG~kT~a~ 279 (484)
T PLN02569 205 YCAAAGIPSIVFLPADKISIAQLVQPIANGALVLSIDT--DFDGCMRLIREVTAEL-PIYLANSL-NSLR-LEGQKTAAI 279 (484)
T ss_pred HHHhcCCeEEEEEcCCCCCHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHHc-CCEecCCC-Ccch-hHhHHHHHH
Confidence 9999999999999997 788999999999999999996 6899999999988876 68999988 8887 789999999
Q ss_pred HHHhhhCCC-CCEEEEecCCchhHHHHHHHHHhhC------CCcEEEEEecCCCcccc----CCC-------CCCccccc
Q 020528 167 EIWKGTGGK-IDALVSGIGTGGTVTGAGKYLKEHN------PEIKLYGVEPVESAVLS----GGK-------PGPHKIQG 228 (325)
Q Consensus 167 Ei~~ql~~~-~D~iv~pvG~Gg~~aGi~~~~k~~~------~~~~vigV~~~~~~~~~----~~~-------~~~~~~~g 228 (325)
||++|+++. ||+||+|+|+||+++|++++||++. +.+|||+||+++++++. .+. ..++.+++
T Consensus 280 EI~eQl~~~~pD~VvvPvG~Gg~l~Gi~kgfkel~~~G~i~~~Priv~Vqa~g~~pl~~a~~~G~~~~~~~~~~~T~A~g 359 (484)
T PLN02569 280 EILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCKELGLVDRLPRLVCAQAANANPLYRAYKSGWEEFKPVKANPTFASA 359 (484)
T ss_pred HHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHHcCCCCCCCeEEEEeeCCCcHHHHHHHcCCCccccCCCCCccchh
Confidence 999999765 9999999999999999999999974 45899999999998764 232 13455677
Q ss_pred CCCCCCcccccc------ccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCC-CCCCEEEEEeCCC
Q 020528 229 IGAGFIPGVLDV------NLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE-NAGKLIVVVFPSF 301 (325)
Q Consensus 229 l~~~~~~~~~~~------~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~i~t~~ 301 (325)
|+.+. |..+.. +.-+.++.|+|+|+++++++ ++++|+++||+||+++++++++.+++. .++++||+++||+
T Consensus 360 i~i~~-P~~~~~~l~al~~s~g~~v~VsDeEi~~a~~~-a~~~Gi~vepssAaalAal~kl~~~g~i~~~~~VV~i~Tg~ 437 (484)
T PLN02569 360 IQIGD-PVSIDRAVYALKESNGIVEEATEEELMDAQAE-ADKTGMFLCPHTGVALAALKKLRASGVIGPTDRTVVVSTAH 437 (484)
T ss_pred hccCC-CccHHHHHHHHHHhCCEEEEECHHHHHHHHHH-HHHCCcEECchHHHHHHHHHHHHHcCCCCCCCcEEEEeCCC
Confidence 76653 444322 22344799999999999999 999999999999999999999988764 5678999999999
Q ss_pred CCCCcch
Q 020528 302 GERYLSS 308 (325)
Q Consensus 302 g~~~~~~ 308 (325)
|.||.+.
T Consensus 438 GlK~~~~ 444 (484)
T PLN02569 438 GLKFTQS 444 (484)
T ss_pred cccChhH
Confidence 9999885
|
|
| >PRK09224 threonine dehydratase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-57 Score=439.86 Aligned_cols=297 Identities=24% Similarity=0.326 Sum_probs=256.6
Q ss_pred hHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHH
Q 020528 9 AKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFM 88 (325)
Q Consensus 9 ~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~ 88 (325)
..++...+++|||+++++|++.+|.+||+|+|++|||||||+|+|.+++..+.+... .++||++|+||||+|+|++
T Consensus 11 ~~~v~~~~~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~----~~gvV~aSaGNha~avA~a 86 (504)
T PRK09224 11 TARVYDVAQETPLEKAPKLSARLGNQVLLKREDLQPVFSFKLRGAYNKMAQLTEEQL----ARGVITASAGNHAQGVALS 86 (504)
T ss_pred HHHhcCcCCCCCceehhHhHHHhCCEEEEEecCCCCCCCChHHHHHHHHHhhhHHhc----CCEEEEECcCHHHHHHHHH
Confidence 357778899999999999998888899999999999999999999999988764322 2679999999999999999
Q ss_pred HHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHH
Q 020528 89 AAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEI 168 (325)
Q Consensus 89 a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei 168 (325)
|+++|++|+||||++++..|++.++.+||+|+.++. +++++.+.+++++++. +++|++||+|+.+ ++|++|+++||
T Consensus 87 a~~lGi~~~IvmP~~tp~~K~~~~r~~GA~Vi~~g~--~~~~a~~~a~~l~~~~-g~~~v~~f~~~~~-i~G~gTi~~EI 162 (504)
T PRK09224 87 AARLGIKAVIVMPVTTPDIKVDAVRAFGGEVVLHGD--SFDEAYAHAIELAEEE-GLTFIHPFDDPDV-IAGQGTIAMEI 162 (504)
T ss_pred HHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcHH-HHhHHHHHHHH
Confidence 999999999999999999999999999999999984 6899999999998886 7899999999987 79999999999
Q ss_pred HhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCCC-----CcccccCCCCCC---cc
Q 020528 169 WKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKPG-----PHKIQGIGAGFI---PG 236 (325)
Q Consensus 169 ~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~~-----~~~~~gl~~~~~---~~ 236 (325)
++|++..||+||+|+|+||+++|++.++|...|++|||||||++++++. .+++. .+.+++++...+ ++
T Consensus 163 ~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigVe~~~~~~~~~s~~~g~~~~~~~~~~~adg~av~~~g~~~~ 242 (504)
T PRK09224 163 LQQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEPEDSACLKAALEAGERVDLPQVGLFADGVAVKRIGEETF 242 (504)
T ss_pred HHhccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCCccCCCCCcccCcccCCCccHHHH
Confidence 9999655999999999999999999999999999999999999998774 23331 234566654432 33
Q ss_pred ccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhHHHHH
Q 020528 237 VLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFESVKK 316 (325)
Q Consensus 237 ~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~~~~~ 316 (325)
.+.++++|+++.|+|+|+.++++++++++|+++||++|+++|+++++.++...++++||+|+|| |+.++++ +..+.+
T Consensus 243 ~~~~~~vd~~v~Vsd~ei~~a~~~l~~~~~~~~epagA~~lAal~~~~~~~~~~g~~vv~i~sG-~n~~~~~--l~~~~~ 319 (504)
T PRK09224 243 RLCQEYVDDVITVDTDEICAAIKDVFEDTRSIAEPAGALALAGLKKYVAQHGIEGETLVAILSG-ANMNFDR--LRYVAE 319 (504)
T ss_pred HHHHhcCCeEEEECHHHHHHHHHHHHHhcCeEEcHHHHHHHHHHHHhhhhcCCCCCeEEEEECC-CCCCHHH--HHHHHH
Confidence 4457889999999999999999999999999999999999999999876654468899999976 5544443 555443
|
|
| >TIGR01127 ilvA_1Cterm threonine dehydratase, medium form | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-58 Score=431.68 Aligned_cols=284 Identities=24% Similarity=0.341 Sum_probs=248.0
Q ss_pred CCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEE
Q 020528 19 TPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLII 98 (325)
Q Consensus 19 TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i 98 (325)
|||+++++|++..|++||+|+|++|||||||||+|.+++..+.+++.. ++||++|+||||+|+|++|+++|++|+|
T Consensus 1 TPl~~~~~ls~~~g~~i~~K~E~~~ptgS~K~R~a~~~i~~~~~~~~~----~~vv~aSsGN~g~alA~~a~~~G~~~~i 76 (380)
T TIGR01127 1 TPLIYSTTLSDITGSEVYLKLENLQKTGSFKIRGALNKIANLSEDQRQ----RGVVAASAGNHAQGVAYAAKKFGIKAVI 76 (380)
T ss_pred CCceehHHHHHHhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhccC----CEEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence 899999999988888999999999999999999999999999888763 4799999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHHHhhhCCCCCE
Q 020528 99 TMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDA 178 (325)
Q Consensus 99 ~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~ql~~~~D~ 178 (325)
|||+.++..|+++++.+||+|+.++. +++++.+.+++++++. +++|++||+|+.+ ++||+|+++||++|+ +.||+
T Consensus 77 v~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~a~~~a~~~~~~~-~~~~~~~~~~~~~-~~g~~t~~~Ei~~q~-~~~D~ 151 (380)
T TIGR01127 77 VMPESAPPSKVKATKSYGAEVILHGD--DYDEAYAFATSLAEEE-GRVFVHPFDDEFV-MAGQGTIGLEIMEDI-PDVDT 151 (380)
T ss_pred EEcCCCcHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCCCCChhh-hhhhHHHHHHHHHhC-CCCCE
Confidence 99999999999999999999999984 6899999999998886 7899999999987 799999999999999 47999
Q ss_pred EEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCCC-----CcccccCCCCC---CccccccccCCeE
Q 020528 179 LVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKPG-----PHKIQGIGAGF---IPGVLDVNLLDET 246 (325)
Q Consensus 179 iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~~-----~~~~~gl~~~~---~~~~~~~~~~d~~ 246 (325)
||+|+|+||+++|++.++|...|++|||||||++++++. .+++. .+.++|++... .++.+..+++|++
T Consensus 152 vv~~vG~Gg~~aGi~~~~k~~~p~~kvigVe~~~~~~~~~~~~~g~~~~~~~~~~~a~g~~~~~~~~~~~~~~~~~vd~~ 231 (380)
T TIGR01127 152 VIVPVGGGGLISGVASAAKQINPNVKVIGVEAEGAPSMYESLREGKIKAVESVRTIADGIAVKKPGDLTFNIIKEYVDDV 231 (380)
T ss_pred EEEEeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCCCCCeecchhCCCccHHHHHHHHHhCCEE
Confidence 999999999999999999999999999999999998764 34322 34556776433 2333456789999
Q ss_pred EEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhHHHHH
Q 020528 247 VQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFESVKK 316 (325)
Q Consensus 247 ~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~~~~~ 316 (325)
+.|+|+|+.+++++|++++|+++||++|++++++++.... .++++||+++|| |+.+.| ++..+..
T Consensus 232 v~V~d~e~~~a~~~l~~~~gi~~e~s~a~~laa~~~~~~~--~~~~~vv~i~sG-Gn~d~d--~l~~vi~ 296 (380)
T TIGR01127 232 VTVDEEEIANAIYLLLERHKILAEGAGAAGVAALLEQKVD--VKGKKIAVVLSG-GNIDLN--LLNKIIE 296 (380)
T ss_pred EEECHHHHHHHHHHHHHhcCeEechHHHHHHHHHHhCccc--cCCCeEEEEeCC-CCCCHH--HHHHHHH
Confidence 9999999999999999999999999999999999874322 367899999975 775544 4655543
|
A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes. |
| >cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-58 Score=420.05 Aligned_cols=288 Identities=25% Similarity=0.326 Sum_probs=252.6
Q ss_pred cccchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHH
Q 020528 4 EKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGI 83 (325)
Q Consensus 4 ~~~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~ 83 (325)
..++++++|.+.+|+|||+++++|+..+|.+||+|+|++|||||||||++.+++.++.+.|. ..+||++|+||||+
T Consensus 3 ~~~~~~~~i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptgS~Kdr~a~~~l~~~~~~~~----~~~iv~~ssGN~g~ 78 (304)
T cd01562 3 DILAAAARIKPVVRRTPLLTSPTLSELLGAEVYLKCENLQKTGSFKIRGAYNKLLSLSEEER----AKGVVAASAGNHAQ 78 (304)
T ss_pred HHHHHHHHHhCcCCCCCcccchhhHHHhCCeEEEEeccCCCcCCcHHHhHHHHHHhcCHhhc----CCcEEEECCCHHHH
Confidence 34678899999999999999999987778899999999999999999999999999987763 25699999999999
Q ss_pred HHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhc
Q 020528 84 GLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYET 163 (325)
Q Consensus 84 alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t 163 (325)
|+|++|+.+|++|++|+|.+.+..|+++++.+||+|+.+++ +++++.+.+++++++. +++|++||+|+.+ ..|+++
T Consensus 79 alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~Ga~vi~~~~--~~~~~~~~a~~la~~~-~~~~~~~~~n~~~-~~g~~~ 154 (304)
T cd01562 79 GVAYAAKLLGIPATIVMPETAPAAKVDATRAYGAEVVLYGE--DFDEAEAKARELAEEE-GLTFIHPFDDPDV-IAGQGT 154 (304)
T ss_pred HHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcch-hccHHH
Confidence 99999999999999999999999999999999999999996 4889999999998886 7899999999987 689999
Q ss_pred hHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCCC-----CcccccCCCCCC
Q 020528 164 TGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKPG-----PHKIQGIGAGFI 234 (325)
Q Consensus 164 ~~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~~-----~~~~~gl~~~~~ 234 (325)
+++||++|+. .||+||+|+|+||+++|++++||+.+|.+|||+|+|.+++++. .+... .+..++++....
T Consensus 155 ~~~Ei~~q~~-~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~ 233 (304)
T cd01562 155 IGLEILEQVP-DLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEPEGAPAMAQSLAAGKPVTLPEVDTIADGLAVKRP 233 (304)
T ss_pred HHHHHHHhcC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHcCCcccCCCCCcccccccCCCc
Confidence 9999999995 5999999999999999999999999999999999999987763 23221 233345543321
Q ss_pred ---ccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCC
Q 020528 235 ---PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFG 302 (325)
Q Consensus 235 ---~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g 302 (325)
++.+..+++|+++.|+|+|+++++++|++++|+++||+||+++++++++.++. ++++||+++|||.
T Consensus 234 ~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~a~a~~~~~~~~~--~~~~vv~i~tGG~ 302 (304)
T cd01562 234 GELTFEIIRKLVDDVVTVSEDEIAAAMLLLFEREKLVAEPAGALALAALLSGKLDL--KGKKVVVVLSGGN 302 (304)
T ss_pred hHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCceEchhHHHHHHHHHhCcccc--CCCeEEEEecCCC
Confidence 23345577899999999999999999999999999999999999999987654 6789999998764
|
Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions. |
| >PRK08329 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-57 Score=421.99 Aligned_cols=278 Identities=23% Similarity=0.242 Sum_probs=244.5
Q ss_pred HHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHH
Q 020528 11 DVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAA 90 (325)
Q Consensus 11 ~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~ 90 (325)
.+++++|.|||+++. .+||+|+|++|||||||||++.+++.++.+.|. ++||++|+||||+|+|++|+
T Consensus 57 ~~sl~eg~Tpl~~~~-------~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~aa 124 (347)
T PRK08329 57 LPHLTPPITPTVKRS-------IKVYFKLDYLQPTGSFKDRGTYVTVAKLKEEGI-----NEVVIDSSGNAALSLALYSL 124 (347)
T ss_pred CCcCCCCCCccccCC-------CeEEEEeCCCCCCcCCHHHHHHHHHHHHHHcCC-----CEEEEECCCcHHHHHHHHHH
Confidence 368899999999973 489999999999999999999999999999886 68999999999999999999
Q ss_pred HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHHHh
Q 020528 91 AKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWK 170 (325)
Q Consensus 91 ~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~ 170 (325)
++|++|+||||.+++..|+.+++.+||+|+.+++ +++++.+.+++++++. +++|++++.||.+ ++||+|+++||++
T Consensus 125 ~~G~~~~v~vp~~~~~~k~~~~~~~GA~v~~v~~--~~~~~~~~a~~l~~~~-~~~~~~~~~np~~-~eG~~t~~~Ei~e 200 (347)
T PRK08329 125 SEGIKVHVFVSYNASKEKISLLSRLGAELHFVEG--DRMEVHEEAVKFSKRN-NIPYVSHWLNPYF-LEGTKTIAYEIYE 200 (347)
T ss_pred HcCCcEEEEECCCChHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCeeccCCCCchh-hccchhHHHHHHH
Confidence 9999999999999999999999999999999986 4677788888887775 6788899889987 7899999999999
Q ss_pred hhCCCCCEEEEecCCchhHHHHHHHHHhhC------CCcEEEEEecCCCccccC-CCCCCcccccCCCCCCccc-----c
Q 020528 171 GTGGKIDALVSGIGTGGTVTGAGKYLKEHN------PEIKLYGVEPVESAVLSG-GKPGPHKIQGIGAGFIPGV-----L 238 (325)
Q Consensus 171 ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~------~~~~vigV~~~~~~~~~~-~~~~~~~~~gl~~~~~~~~-----~ 238 (325)
|++ .||+||+|+|+||+++|++++||++. +.+|+|+|||++++++.. .....+.+++++.+.++.. +
T Consensus 201 ql~-~pD~vvvpvG~Gg~l~Gi~~g~kel~~~g~i~~~p~ii~Vq~~g~~~~~~~~~~~~t~a~gi~i~~~~~~~~~~~~ 279 (347)
T PRK08329 201 QIG-VPDYAFVPVGSGTLFLGIWKGFKELHEMGEISKMPKLVAVQAEGYESLCKRSKSENKLADGIAIPEPPRKEEMLRA 279 (347)
T ss_pred HcC-CCCEEEEeCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCchHHhccCCCCceeeeEEeCCCCCHHHHHHH
Confidence 995 89999999999999999999999974 568999999999877753 2334566778876654332 2
Q ss_pred ccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCC-CCCCEEEEEeCCCCCCCc
Q 020528 239 DVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE-NAGKLIVVVFPSFGERYL 306 (325)
Q Consensus 239 ~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~i~t~~g~~~~ 306 (325)
.++..+..+.|+|+|++++++++++ +|+++||+||+++|+++++.+++. .++++||+++|++|.|++
T Consensus 280 l~~~~g~~~~V~d~e~~~a~~~l~~-~Gi~vepssa~a~Aa~~~l~~~g~i~~~~~Vv~~~TG~glK~~ 347 (347)
T PRK08329 280 LEESNGFCISVGEEETRAALHWLRR-MGFLVEPTSAVALAAYWKLLEEGLIEGGSKVLLPLSGSGLKNL 347 (347)
T ss_pred HHHhCCEEEEECHHHHHHHHHHHHh-cCceECccHHHHHHHHHHHHHhCCCCCCCeEEEEeCCCCccCC
Confidence 2345677999999999999999986 799999999999999999988875 478899999999999975
|
|
| >PRK06260 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-57 Score=428.40 Aligned_cols=288 Identities=25% Similarity=0.258 Sum_probs=249.3
Q ss_pred HHHhhhhCCCCceecccccCCCCc-eEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHH
Q 020528 10 KDVTELIGKTPLVYLNRIVDGCVA-RIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFM 88 (325)
Q Consensus 10 ~~i~~~~~~TPL~~~~~l~~~~~~-~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~ 88 (325)
+.+++++|+|||+++++|+..+|. +||+|+|++|||||||||++.+++.++.++|. ++||++|+||||+|+|++
T Consensus 59 ~~v~l~~G~TPLv~~~~l~~~~g~~~l~~K~E~~nPTGSfKdRga~~~v~~a~~~g~-----~~vv~aSsGN~g~alA~~ 133 (397)
T PRK06260 59 KIVSLNEGGTPLYRCPNLEKELGVKELYVKHEGANPTGSFKDRGMTVGVTKALELGV-----KTVACASTGNTSASLAAY 133 (397)
T ss_pred CcccCCCCCCCeEEchhhHHHhCCCcEEEEeCCCCCCcCcHHHHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHH
Confidence 368899999999999999877776 89999999999999999999999999999886 689999999999999999
Q ss_pred HHHcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHH
Q 020528 89 AAAKGYRLIITMPAS-MSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPE 167 (325)
Q Consensus 89 a~~~g~~~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~E 167 (325)
|+.+|++|+||+|++ ++..|+.+++.+||+|+.+++ +++++.+.+++++++. ++|+++++ ||.+ ++||+|+++|
T Consensus 134 aa~~G~~~~i~vP~~~~~~~k~~~~~~~GA~vi~v~~--~~~~~~~~a~~~~~~~-g~y~~~~~-np~~-~~G~~t~a~E 208 (397)
T PRK06260 134 AARAGLKCYVLLPAGKVALGKLAQALLHGAKVLEVDG--NFDDALDMVVELAKEG-KIYLLNSI-NPFR-LEGQKTIGFE 208 (397)
T ss_pred HHHcCCcEEEEEeCCCccHHHHHHHHhcCCEEEEECC--cHHHHHHHHHHHHhhC-CEEeecCC-Cchh-hcchhhHHHH
Confidence 999999999999997 789999999999999999996 5889999999988876 78888887 8887 7899999999
Q ss_pred HHhhhCC-CCCEEEEecCCchhHHHHHHHHHhhCC------CcEEEEEecCCCcccc----CCCCC-------CcccccC
Q 020528 168 IWKGTGG-KIDALVSGIGTGGTVTGAGKYLKEHNP------EIKLYGVEPVESAVLS----GGKPG-------PHKIQGI 229 (325)
Q Consensus 168 i~~ql~~-~~D~iv~pvG~Gg~~aGi~~~~k~~~~------~~~vigV~~~~~~~~~----~~~~~-------~~~~~gl 229 (325)
|++|+++ .||+||+|+|+||+++|++++|+++.+ .+|||+||+++++++. .+... .+..+++
T Consensus 209 i~eQl~~~~pd~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i~~~prii~Vq~~g~~~~~~a~~~g~~~~~~~~~~~tia~~i 288 (397)
T PRK06260 209 IADQLGWEVPDRVVLPVGNAGNISAIWKGFKELVELGIIDKLPKMTGIQAEGAAPIVEAIKKGKDEIEPVENPETVATAI 288 (397)
T ss_pred HHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHhcCCcCCCCeEEEEecCCCcHHHHHHHcCCCcccccCCCCceeeee
Confidence 9999976 699999999999999999999999863 3899999999998763 23221 2233444
Q ss_pred CCCCCccc------cccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCC-CCCCEEEEEeCCCC
Q 020528 230 GAGFIPGV------LDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE-NAGKLIVVVFPSFG 302 (325)
Q Consensus 230 ~~~~~~~~------~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~i~t~~g 302 (325)
..+. |.. ..++..+.++.|+|+|+++++++|++++|+++||+||+++++++++.+++. .++++||+++||+|
T Consensus 289 ~i~~-p~~~~~~~~~l~~~~g~~v~V~d~e~~~a~~~la~~eGi~vepssaaalAa~~~l~~~g~i~~~~~VV~i~tG~g 367 (397)
T PRK06260 289 RIGN-PVNAPKALRAIRESGGTAEAVSDEEILDAQKLLARKEGIGVEPASAASVAGLIKLVEEGVIDKDERVVCITTGHL 367 (397)
T ss_pred EeCC-CCCHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHhCCCeeCchHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCc
Confidence 3322 221 123445789999999999999999999999999999999999999988754 46889999999999
Q ss_pred CCCcch
Q 020528 303 ERYLSS 308 (325)
Q Consensus 303 ~~~~~~ 308 (325)
.|+.+.
T Consensus 368 lK~~~~ 373 (397)
T PRK06260 368 LKDPDA 373 (397)
T ss_pred cCchHH
Confidence 998775
|
|
| >PRK08246 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-57 Score=414.64 Aligned_cols=286 Identities=22% Similarity=0.299 Sum_probs=244.2
Q ss_pred ccchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHH
Q 020528 5 KSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIG 84 (325)
Q Consensus 5 ~~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 84 (325)
...+.++|...+++|||++++.++.. +.+||+|+|++|||||||||++.+++..+.+ + .++||++|+||||+|
T Consensus 10 i~~a~~~i~~~i~~TPl~~~~~l~~~-~~~i~~K~E~~nptGS~K~R~a~~~~~~~~~-~-----~~~vv~aSsGN~g~a 82 (310)
T PRK08246 10 VRAAAQRIAPHIRRTPVLEADGAGFG-PAPVWLKLEHLQHTGSFKARGAFNRLLAAPV-P-----AAGVVAASGGNAGLA 82 (310)
T ss_pred HHHHHHHHhCcCCCCCeeeccccccC-CCEEEEEECCCCCCCCCHHHHHHHHHHhhcc-c-----CCeEEEeCCCHHHHH
Confidence 34577899999999999999998866 6899999999999999999999999988765 2 267999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhch
Q 020528 85 LAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETT 164 (325)
Q Consensus 85 lA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~ 164 (325)
+|++|+.+|++|+||+|+.+++.|+.+++.+||+|+.++. +++++.+.+++++++. +++|++||+|+.+ +.||+++
T Consensus 83 ~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~-i~g~~t~ 158 (310)
T PRK08246 83 VAYAAAALGVPATVFVPETAPPAKVARLRALGAEVVVVGA--EYADALEAAQAFAAET-GALLCHAYDQPEV-LAGAGTL 158 (310)
T ss_pred HHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEeCCCCCChhh-hcchHHH
Confidence 9999999999999999999999999999999999999985 5788888998888876 7899999999987 7899999
Q ss_pred HHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCCCCcc-----cccCCCCCC-
Q 020528 165 GPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKPGPHK-----IQGIGAGFI- 234 (325)
Q Consensus 165 ~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~~~~~-----~~gl~~~~~- 234 (325)
++||++|+ +.||+||+|+|+||+++|++.+|+. .+||++|||++++++. .+++.... .++++.+..
T Consensus 159 ~~Ei~eq~-~~~D~iv~~vG~GG~~~Gi~~~~~~---~~~vi~ve~~~~~~~~~s~~~g~~~~~~~~~~~~~~l~~~~~~ 234 (310)
T PRK08246 159 GLEIEEQA-PGVDTVLVAVGGGGLIAGIAAWFEG---RARVVAVEPEGAPTLHAALAAGEPVDVPVSGIAADSLGARRVG 234 (310)
T ss_pred HHHHHHhc-CCCCEEEEecCccHHHHHHHHHhcC---CCEEEEEeeCCChHHHHHHHcCCcccCCCCCceeccccCCCcc
Confidence 99999998 5799999999999999999999974 4899999999998764 34433222 233444332
Q ss_pred --ccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcc
Q 020528 235 --PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLS 307 (325)
Q Consensus 235 --~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~ 307 (325)
++.+.++.+|+++.|+|+|++++++++++++|+++||++|++++++++.... ..++++||+|+|+ |+.+++
T Consensus 235 ~~~~~~~~~~~~~~~~Vsd~e~~~a~~~l~~~egi~~e~s~aa~lAa~~~~~~~-~~~~~~vv~i~~g-~n~d~~ 307 (310)
T PRK08246 235 EIAFALARAHVVTSVLVSDEAIIAARRALWEELRLAVEPGAATALAALLSGAYV-PAPGERVAVVLCG-ANTDPA 307 (310)
T ss_pred HHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHcCceeehHHHHHHHHHHhCCcc-ccCCCeEEEEECC-CCCChh
Confidence 3345667899999999999999999999999999999999999999764322 1357889999976 555554
|
|
| >cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-57 Score=416.74 Aligned_cols=286 Identities=27% Similarity=0.297 Sum_probs=248.1
Q ss_pred HHHhhhhCCCCceecccccCCCC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHH
Q 020528 10 KDVTELIGKTPLVYLNRIVDGCV-ARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFM 88 (325)
Q Consensus 10 ~~i~~~~~~TPL~~~~~l~~~~~-~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~ 88 (325)
..+.+++|+|||+++++|+...+ .+||+|+|++|||||||||++.+++..+.++|. ++||++|+||||.|+|++
T Consensus 14 ~~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-----~~vv~~SsGN~g~alA~~ 88 (324)
T cd01563 14 DIVSLGEGNTPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGMTVAVSKAKELGV-----KAVACASTGNTSASLAAY 88 (324)
T ss_pred CcccCCCCCCceeechhhHhhcCCCceEEEecCCCCcccHHHhhHHHHHHHHHHcCC-----CEEEEeCCCHHHHHHHHH
Confidence 46888999999999999987655 799999999999999999999999999999885 679999999999999999
Q ss_pred HHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHH
Q 020528 89 AAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEI 168 (325)
Q Consensus 89 a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei 168 (325)
|+.+|++|+++||+++++.|+++++.+||+|+.++. +++++.+.+++++++. ++|++||+|+.+ +.||.+++.||
T Consensus 89 a~~~G~~~~ivvp~~~~~~k~~~l~~~GA~Vi~~~~--~~~~~~~~a~~~~~~~--~~~~~~~~n~~~-~~g~~t~~~Ei 163 (324)
T cd01563 89 AARAGIKCVVFLPAGKALGKLAQALAYGATVLAVEG--NFDDALRLVRELAEEN--WIYLSNSLNPYR-LEGQKTIAFEI 163 (324)
T ss_pred HHHcCCceEEEEeCCCCHHHHHHHHHcCCEEEEECC--cHHHHHHHHHHHHHhc--CeeccCCCCcce-ecchhhhHHHH
Confidence 999999999999999999999999999999999986 5788888999988775 788999999998 67999999999
Q ss_pred HhhhCC-CCCEEEEecCCchhHHHHHHHHHhhC------CCcEEEEEecCCCcccc----CCCC-------CCcccccCC
Q 020528 169 WKGTGG-KIDALVSGIGTGGTVTGAGKYLKEHN------PEIKLYGVEPVESAVLS----GGKP-------GPHKIQGIG 230 (325)
Q Consensus 169 ~~ql~~-~~D~iv~pvG~Gg~~aGi~~~~k~~~------~~~~vigV~~~~~~~~~----~~~~-------~~~~~~gl~ 230 (325)
++|+.+ .||+||+|+|+||+++|++.+||... +.+|||+|||.+++++. .+.. ..+.+++++
T Consensus 164 ~~q~~~~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~vigve~~~~~~~~~~~~~g~~~~~~~~~~~t~~~gl~ 243 (324)
T cd01563 164 AEQLGWEVPDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQAEGAAPIVRAFKEGKDDIEPVENPETIATAIR 243 (324)
T ss_pred HHHcCCCCCCEEEEecCCcHHHHHHHHHHHHHHhCCccccCCeEEEEecCCCCHHHHHHHcCCCccCcCCCCCceeeeee
Confidence 999963 69999999999999999999999976 57999999999987653 2211 123445665
Q ss_pred CCCCc---c--ccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCC-CCCCEEEEEeCCCCCC
Q 020528 231 AGFIP---G--VLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE-NAGKLIVVVFPSFGER 304 (325)
Q Consensus 231 ~~~~~---~--~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~i~t~~g~~ 304 (325)
.+..+ . .+..++.|+++.|+|+|++++++++++++|+++||+||+++++++++.+++. .++++||+++||+|.|
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~pssa~alaa~~~l~~~~~~~~~~~Vv~v~tg~g~~ 323 (324)
T cd01563 244 IGNPASGPKALRAVRESGGTAVAVSDEEILEAQKLLARTEGIFVEPASAASLAGLKKLREEGIIDKGERVVVVLTGHGLK 323 (324)
T ss_pred cCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhcCCceeCchHHHHHHHHHHHHHcCCCCCCCcEEEEeCCCccC
Confidence 44321 1 1223566899999999999999999999999999999999999999877643 4678999999999987
Q ss_pred C
Q 020528 305 Y 305 (325)
Q Consensus 305 ~ 305 (325)
+
T Consensus 324 ~ 324 (324)
T cd01563 324 D 324 (324)
T ss_pred C
Confidence 4
|
It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants. |
| >PRK06450 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-56 Score=413.51 Aligned_cols=266 Identities=25% Similarity=0.262 Sum_probs=226.4
Q ss_pred HHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHH
Q 020528 11 DVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAA 90 (325)
Q Consensus 11 ~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~ 90 (325)
.+++++|+|||++.+ +||+|+|++|||||||||++.+++.++.++|. ++|+++|+||+|.|+|++|+
T Consensus 51 ~vslgeG~TPLv~~~--------~l~~K~E~~nPTGSfKDRga~~~i~~a~~~g~-----~~vv~aSsGN~g~slA~~aa 117 (338)
T PRK06450 51 FISLGEGRTPLIKKG--------NIWFKLDFLNPTGSYKDRGSVTLISYLAEKGI-----KQISEDSSGNAGASIAAYGA 117 (338)
T ss_pred CCCCCCCCCCceecC--------CEEEEecCCCCcCCCHHHHHHHHHHHHHHcCC-----CEEEEECCcHHHHHHHHHHH
Confidence 588999999999864 59999999999999999999999999999875 68999999999999999999
Q ss_pred HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHHHh
Q 020528 91 AKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWK 170 (325)
Q Consensus 91 ~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~ 170 (325)
.+|++|+||||++++..|+.+++.+||+|+.+++ +++++.+. +++. +.+|++++.||.+ ++|++|+++||++
T Consensus 118 ~~G~~~~i~vP~~~~~~k~~~i~~~GA~vi~v~~--~~~~~~~~----a~~~-g~~~~~~~~np~~-ieG~kTia~EI~e 189 (338)
T PRK06450 118 AAGIEVKIFVPETASGGKLKQIESYGAEVVRVRG--SREDVAKA----AENS-GYYYASHVLQPQF-RDGIRTLAYEIAK 189 (338)
T ss_pred HcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHH----HHhc-CeEeccCCCCccH-HHHHHHHHHHHHH
Confidence 9999999999999999999999999999999996 46655443 4444 6788999999987 7899999999999
Q ss_pred hhCC-CCCEEEEecCCchhHHHHHHHHHhhCC------CcEEEEEecCCCcccc----CCCC-----CCcccccCCCCCC
Q 020528 171 GTGG-KIDALVSGIGTGGTVTGAGKYLKEHNP------EIKLYGVEPVESAVLS----GGKP-----GPHKIQGIGAGFI 234 (325)
Q Consensus 171 ql~~-~~D~iv~pvG~Gg~~aGi~~~~k~~~~------~~~vigV~~~~~~~~~----~~~~-----~~~~~~gl~~~~~ 234 (325)
|+++ .||+||+|+|+||+++|++++|+++.+ .+|+|+|||++++++. +..+ ..+..++|..+.
T Consensus 190 ql~~~~pD~vvvpvG~Ggll~Gi~~g~~el~~~G~i~~~prii~Vq~~g~~p~~~a~~~~~~~~~~~~~tia~~l~~~~- 268 (338)
T PRK06450 190 DLDWKIPNYVFIPVSAGTLLLGVYSGFKHLLDSGVISEMPKIVAVQTEQVSPLCAKFKGISYTPPDKVTSIADALVSTR- 268 (338)
T ss_pred HcCCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCccCCCeEEEEeeCCCCHHHHHhcCCCCCCCCCCCcceeeeecCC-
Confidence 9964 599999999999999999999999875 3899999999988764 2211 123345554333
Q ss_pred ccccc------cccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCc
Q 020528 235 PGVLD------VNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYL 306 (325)
Q Consensus 235 ~~~~~------~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~ 306 (325)
|.... ++. +..+.|+|+|+++++++|++ +|+++||+||+++|+++++ ++++||+++|++|.|.+
T Consensus 269 p~~~~~~~~~i~~~-g~~v~V~d~ei~~a~~~La~-~Gi~vepssaaalAa~~~l------~~~~vv~vltG~glK~~ 338 (338)
T PRK06450 269 PFLLDYMVKALSEY-GECIVVSDNEIVEAWKELAK-KGLLVEYSSATVYAAYKKY------SVNDSVLVLTGSGLKVL 338 (338)
T ss_pred CCCHHHHHHHHHhc-CcEEEECHHHHHHHHHHHHH-cCCEEChhHHHHHHHHHHC------CCCCEEEEeCCCCccCC
Confidence 22221 233 78999999999999999987 6999999999999999885 34689999999999864
|
|
| >TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-56 Score=417.36 Aligned_cols=287 Identities=22% Similarity=0.250 Sum_probs=247.1
Q ss_pred hhCCCCceecccccC--------CCCceEEEEeCCCCC-CCChhhHHHHHHHHH-----HHHhCCCCCCC----------
Q 020528 15 LIGKTPLVYLNRIVD--------GCVARIAAKLEMMEP-CSSVKDRIGYSMIAD-----AEEKGLIRPGE---------- 70 (325)
Q Consensus 15 ~~~~TPL~~~~~l~~--------~~~~~l~~K~E~~np-tGS~K~R~a~~~~~~-----a~~~g~~~~g~---------- 70 (325)
++++|||++++++++ ..+.+||+|+|++|| |||||||++.+++.. +.+.|.+.++.
T Consensus 67 ~~~~TPL~~~~~ls~~~~~~~~~~~~~~v~lKlE~~nP~tGSfKdRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~e~~~ 146 (431)
T TIGR02035 67 GIIESPLVEIFNMQKELEKKYQQEIPGRLLLKMDSHLPISGSIKARGGIYEVLKHAEELALEAGLLKLDDDYSILAEKKF 146 (431)
T ss_pred CccCCCccchHHHHHHhhhcccCCcCceEEEEecccCCccCCcHHHHHHHHHHHhhHHHHHHcCCCCcCcchhhhcchhh
Confidence 899999999999886 235799999999999 999999999998864 67889887764
Q ss_pred ------eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCC
Q 020528 71 ------SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPN 144 (325)
Q Consensus 71 ------~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~ 144 (325)
++||++|+||||+|+|++|+.+|++|+||||++++..|+++++.|||+|+.+++ +|+++.+.+++++++.++
T Consensus 147 ~~~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~~K~~~ir~~GAeVv~~~~--~~~~a~~~A~~la~~~~~ 224 (431)
T TIGR02035 147 KDFFSRYSIAVGSTGNLGLSIGIISAALGFQVTVHMSADAKQWKKDKLRSKGVTVVEYES--DYGVAVEEGRKNADADPM 224 (431)
T ss_pred hhcccCceEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhcCC
Confidence 589999999999999999999999999999999999999999999999999996 689999999999988766
Q ss_pred eEEeCCCCCCcchHhHHhchHHHHHhhhCC--------CCCEEEEecCCchhHHHHHHHHHhh-CCCcEEEEEecCCCcc
Q 020528 145 SYVLQQFENPANPKIHYETTGPEIWKGTGG--------KIDALVSGIGTGGTVTGAGKYLKEH-NPEIKLYGVEPVESAV 215 (325)
Q Consensus 145 ~~~~~~~~n~~~~~~g~~t~~~Ei~~ql~~--------~~D~iv~pvG~Gg~~aGi~~~~k~~-~~~~~vigV~~~~~~~ 215 (325)
+|++++ .|+.+.++||+|+++||++|+.+ .||+|++|+|+||+++|++++||+. .|++|||+|||+++++
T Consensus 225 ~~~~d~-~n~~n~~aG~~T~g~EI~eQl~~~~~~~d~~~pd~V~vp~G~GGli~Gia~~lK~~~~~~vkvi~VEp~~s~~ 303 (431)
T TIGR02035 225 CYFVDD-ENSRNLFLGYAVAASRLKKQFDKKGIVVDKEHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPTHSPC 303 (431)
T ss_pred eEECCC-CCcccHHhhHHHHHHHHHHhhhccccccccCCCCEEEEEeCcCHHHHHHHHHHHHhcCCCCEEEEEeeCCCHH
Confidence 788887 45566789999999999999952 4779999999999999999999997 7899999999999986
Q ss_pred cc----CCC-----------CCCcccccCCCCCCcc---ccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHH
Q 020528 216 LS----GGK-----------PGPHKIQGIGAGFIPG---VLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAAT 277 (325)
Q Consensus 216 ~~----~~~-----------~~~~~~~gl~~~~~~~---~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~ 277 (325)
+. .+. ...+.++||+.+.++. .+.+.++|+++.|+|+|+++++++|++++|+++||+||+++
T Consensus 304 ~~~s~~~g~~~~~~~~~~g~~~~T~AdGlav~~p~~~~~~~~~~~vd~vv~VsD~ei~~a~~~L~~~egi~vEpSsaa~l 383 (431)
T TIGR02035 304 MLLGVYTGLHEKISVQDIGIDNITAADGLAVGRPSGFVGRLMEPLLSGIYTVDDYTLYDLLRILAESEGKRLEPSALAGM 383 (431)
T ss_pred HHHHHhcCCCccccccccCCCCCceeccccCCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCCeEcHHHHHHH
Confidence 52 222 1245678888765332 22345789999999999999999999999999999999999
Q ss_pred HHHHHHHhcC-----------C-CCCCEEEEEeCCCCCC
Q 020528 278 AAAIQIAKRP-----------E-NAGKLIVVVFPSFGER 304 (325)
Q Consensus 278 aa~~~~~~~~-----------~-~~~~~vv~i~t~~g~~ 304 (325)
+++.++.+.. + .++.+.|+..|||+..
T Consensus 384 aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~ 422 (431)
T TIGR02035 384 EGPVRLLKYEDSYRYIEGRIGKNLNNATHVVWATGGGMV 422 (431)
T ss_pred HHHHHHHhhhhhHHHHcCccccccCCCeEEEEecCCCCC
Confidence 9999877652 0 1467889999888764
|
This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine. |
| >cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-56 Score=415.70 Aligned_cols=269 Identities=21% Similarity=0.265 Sum_probs=233.2
Q ss_pred hCCCCceecccccCCCC--------ceEEEEeCCCCC-CCChhhHHHHHHHHH-----HHHhCCCCCCC-----------
Q 020528 16 IGKTPLVYLNRIVDGCV--------ARIAAKLEMMEP-CSSVKDRIGYSMIAD-----AEEKGLIRPGE----------- 70 (325)
Q Consensus 16 ~~~TPL~~~~~l~~~~~--------~~l~~K~E~~np-tGS~K~R~a~~~~~~-----a~~~g~~~~g~----------- 70 (325)
+++|||++++.|+..+| .+||+|+|++|| |||||||++.+++.. +.+.|.+.||.
T Consensus 50 ~~~TPLv~~~~ls~~~g~~~~~~~~~~v~~K~E~~nP~tGSfKdRgA~~~i~~l~~~~a~~~G~l~pg~~~~~~~~~~~~ 129 (404)
T cd06447 50 IIESPLLPIPRMKQALEKLYHQPIKGRLLLKADSHLPISGSIKARGGIYEVLKHAEKLALEHGLLTLEDDYSKLASEKFR 129 (404)
T ss_pred ccCCCceehHHHHHHhccccccCcCceEEEEecCCCCCCCChHHHHHHHHHHHHhHHHHHHhCCCCcccchhhhhhhhhh
Confidence 99999999999886543 799999999999 999999999998863 77889888875
Q ss_pred -----eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCe
Q 020528 71 -----SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNS 145 (325)
Q Consensus 71 -----~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~ 145 (325)
++||++||||||+|+|++|+.+|++|+||||.+++..|+++|+.+||+|+.+++ +++++.+.+++++++.+++
T Consensus 130 ~~~~~~~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~~K~~~ira~GAeVv~v~~--~~~~a~~~a~~la~~~~~~ 207 (404)
T cd06447 130 KLFSQYSIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQWKKDKLRSKGVTVVEYET--DYSKAVEEGRKQAAADPMC 207 (404)
T ss_pred hcccCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHHCCCe
Confidence 489999999999999999999999999999999999999999999999999985 6899999999999887667
Q ss_pred EEeCCCCCCcchHhHHhchHHHHHhhhCC---C-----CCEEEEecCCchhHHHHHHHHHhh-CCCcEEEEEecCCCccc
Q 020528 146 YVLQQFENPANPKIHYETTGPEIWKGTGG---K-----IDALVSGIGTGGTVTGAGKYLKEH-NPEIKLYGVEPVESAVL 216 (325)
Q Consensus 146 ~~~~~~~n~~~~~~g~~t~~~Ei~~ql~~---~-----~D~iv~pvG~Gg~~aGi~~~~k~~-~~~~~vigV~~~~~~~~ 216 (325)
+|++|++++. .++||+|+++||++|+++ + ||+||+|+|+||+++|++++||+. .|+++||+|||++++.+
T Consensus 208 ~~v~~~n~~~-~iaG~~T~g~EI~eQl~~~~~~vD~~~Pd~VvvpvG~GGli~GIa~~lK~~~~p~~kVigVeP~~ap~~ 286 (404)
T cd06447 208 YFVDDENSRD-LFLGYAVAASRLKAQLAELGIKVDAEHPLFVYLPCGVGGAPGGVAFGLKLIFGDNVHCFFAEPTHSPCM 286 (404)
T ss_pred EeCCCCCchh-HHhhHHHHHHHHHHHhhhccCccccCCCCEEEEecCccHHHHHHHHHHHHhcCCCCEEEEEccCCChHH
Confidence 8899965554 589999999999999952 3 558999999999999999999997 78899999999998765
Q ss_pred c----CCCC-----------CCcccccCCCCCC---ccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHH
Q 020528 217 S----GGKP-----------GPHKIQGIGAGFI---PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATA 278 (325)
Q Consensus 217 ~----~~~~-----------~~~~~~gl~~~~~---~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~a 278 (325)
. .+.+ ..+.++||+.+.. ++.+.++.+|+++.|+|+|+.+++++|++++|+++||+||++++
T Consensus 287 ~~s~~ag~~~~~~~~~~g~~~~TiadGl~~~~p~~~~~~~~~~~vd~~v~Vsd~ei~~a~r~La~~~gi~vepSgAa~lA 366 (404)
T cd06447 287 LLGMATGLHDKISVQDIGIDNRTAADGLAVGRPSGLVGKLMEPLLSGIYTVEDDELYRLLAMLKDSENIEVEPSAAAGFT 366 (404)
T ss_pred HHHHHcCCCccccccccCCCccchhhhhcCCCcchhHHHHHHHhCCcEEEECHHHHHHHHHHHHHHcCcEEeHHHHHHHH
Confidence 2 2211 2345677766542 22334578999999999999999999999999999999999999
Q ss_pred HHHHHHhcC
Q 020528 279 AAIQIAKRP 287 (325)
Q Consensus 279 a~~~~~~~~ 287 (325)
+++++.++.
T Consensus 367 Al~~~~~~~ 375 (404)
T cd06447 367 GPAQVLSEA 375 (404)
T ss_pred HHHHHHHhh
Confidence 999987653
|
D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids. |
| >PRK06381 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-56 Score=409.36 Aligned_cols=280 Identities=23% Similarity=0.287 Sum_probs=236.8
Q ss_pred hhhhCCCCceecccccCCCC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHHH
Q 020528 13 TELIGKTPLVYLNRIVDGCV-ARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAA 91 (325)
Q Consensus 13 ~~~~~~TPL~~~~~l~~~~~-~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~ 91 (325)
...+|+|||+++++|+..+| .+||+|+|++|||||||||++.+++..++++|. ++||++|+||||+|+|++|+.
T Consensus 10 ~~~~g~TPL~~~~~l~~~~G~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-----~~lv~aSsGN~g~alA~~aa~ 84 (319)
T PRK06381 10 EKPPGGTPLLRARKLEEELGLRKIYLKFEGANPTGTQKDRIAEAHVRRAMRLGY-----SGITVGTCGNYGASIAYFARL 84 (319)
T ss_pred cccCCCCceeEhHhhHHhcCCceEEEEecCCCCccCcHHHHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHHHH
Confidence 35689999999999987777 699999999999999999999999999999986 679999999999999999999
Q ss_pred cCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCC-CCcchHhHHhchHHHHHh
Q 020528 92 KGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFE-NPANPKIHYETTGPEIWK 170 (325)
Q Consensus 92 ~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-n~~~~~~g~~t~~~Ei~~ 170 (325)
+|++|+||||...+..|+++++.+||+|+.+++ +++++.+.+++++++. ++|++++++ |+...+.||+++++||++
T Consensus 85 ~G~~~~ivvp~~~~~~~~~~l~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~~n~~~~~~G~~t~a~Ei~~ 161 (319)
T PRK06381 85 YGLKAVIFIPRSYSNSRVKEMEKYGAEIIYVDG--KYEEAVERSRKFAKEN-GIYDANPGSVNSVVDIEAYSAIAYEIYE 161 (319)
T ss_pred cCCcEEEEECCCCCHHHHHHHHHcCCEEEEcCC--CHHHHHHHHHHHHHHc-CcEecCCCCCCcchHhhhHHHHHHHHHH
Confidence 999999999999999999999999999999996 4788889999988775 788888886 663237899999999999
Q ss_pred hhCCCCCEEEEecCCchhHHHHHHHHHhh------CCCcEEEEEecCCCcccc----CCCCC--C---ccccc--CCCCC
Q 020528 171 GTGGKIDALVSGIGTGGTVTGAGKYLKEH------NPEIKLYGVEPVESAVLS----GGKPG--P---HKIQG--IGAGF 233 (325)
Q Consensus 171 ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~------~~~~~vigV~~~~~~~~~----~~~~~--~---~~~~g--l~~~~ 233 (325)
|++..||+||+|+|+||+++|++++||+. .|.+||++|++.+++++. .+... . ..+.. +..+.
T Consensus 162 ql~~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~ 241 (319)
T PRK06381 162 ALGDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGVSTSGGNQIVESFKRGSSEVVDLEVDEIRETAVNEPL 241 (319)
T ss_pred HhCCCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEEeeCCCCHHHHHHHcCCCcccCCCcchhhhcccCCCc
Confidence 99667999999999999999999999998 799999999999986553 22211 0 01111 11111
Q ss_pred C-----c----cccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCC
Q 020528 234 I-----P----GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSF 301 (325)
Q Consensus 234 ~-----~----~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~ 301 (325)
. . ..+..++.++.+.|+|+|+++++++|++++|+++||++|+++|+++++.+++. .+++||+++|++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~g~~~~v~d~e~~~a~~~la~~egi~~epssa~alaa~~~~~~~~~-~~~~vv~i~tGg 317 (319)
T PRK06381 242 VSYRSFDGDNALEAIYDSHGYAFGFSDDEMVKYAELLRRMEGLNALPASASALAALVKYLKKNG-VNDNVVAVITGR 317 (319)
T ss_pred ccccCCCHHHHHHHHHHcCCEEEEECHHHHHHHHHHHHHhCCcccCchHHHHHHHHHHHHHcCC-CCCcEEEEecCC
Confidence 0 0 01223556789999999999999999999999999999999999999987754 247899999764
|
|
| >KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-56 Score=397.91 Aligned_cols=290 Identities=22% Similarity=0.248 Sum_probs=257.8
Q ss_pred hhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHH
Q 020528 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAF 87 (325)
Q Consensus 8 ~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 87 (325)
.+.++..++-.|||.+.-.||+..|.++|+|+|++||+||||.||+.+++.+.-++++ ..+|+++|.||||.|+|+
T Consensus 56 ~~~~i~~~~~~TPl~~s~~lS~~~g~~vyLK~E~lQpsgSFK~RGa~~~~~kla~~~~----~~gViasSaGNha~a~Ay 131 (457)
T KOG1250|consen 56 AHFKIYPVIVETPLLKSVALSKKAGMPVYLKREDLQPSGSFKIRGAGNALQKLAKQQK----KAGVIASSAGNHAQAAAY 131 (457)
T ss_pred hhhccccceecccchhhhhhhhhcCCceEEEehhcccccceehhhHHHHHHHHHHhhh----cCceEEecCccHHHHHHH
Confidence 4566778888999999888998889999999999999999999999999998777664 267999999999999999
Q ss_pred HHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHH
Q 020528 88 MAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPE 167 (325)
Q Consensus 88 ~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~E 167 (325)
+|+++|+|++|+||..+|.-|.+.++.+||+|+..+. +++++...+.++++++ ++.|++||++|+. ++|++|++.|
T Consensus 132 aa~~LgipaTIVmP~~tp~~kiq~~~nlGA~Vil~G~--~~deAk~~a~~lAke~-gl~yI~pfDhP~I-~aGqgTig~E 207 (457)
T KOG1250|consen 132 AARKLGIPATIVMPVATPLMKIQRCRNLGATVILSGE--DWDEAKAFAKRLAKEN-GLTYIPPFDHPDI-WAGQGTIGLE 207 (457)
T ss_pred HHHhcCCceEEEecCCChHHHHHHHhccCCEEEEecc--cHHHHHHHHHHHHHhc-CceecCCCCCchh-hcCcchHHHH
Confidence 9999999999999999999999999999999999984 7999999999999998 8999999999997 7999999999
Q ss_pred HHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCCC-----CcccccCCCCCC---c
Q 020528 168 IWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKPG-----PHKIQGIGAGFI---P 235 (325)
Q Consensus 168 i~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~~-----~~~~~gl~~~~~---~ 235 (325)
|++|+...+++|+||||+||+++||+.++|...|+++|||||+++|.++. .|++. .+.++|++...+ .
T Consensus 208 Il~ql~~~~~AI~vpVGGGGLiaGIat~vk~~~p~vkIIGVEt~~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~t 287 (457)
T KOG1250|consen 208 ILEQLKEPDGAIVVPVGGGGLIAGIATGVKRVGPHVKIIGVETEGAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENT 287 (457)
T ss_pred HHHhhcCCCCeEEEecCCchhHHHHHHHHHHhCCCCceEEEeecCcHHHHHHHhcCCeeecccccchhcccccchhhHHH
Confidence 99999666669999999999999999999999999999999999998764 45442 345678876654 3
Q ss_pred cccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcc
Q 020528 236 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLS 307 (325)
Q Consensus 236 ~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~ 307 (325)
..+.+.++|+++.|+|+|+..+++++.+++...+||++|+++|+++.. +....+++++|.+++++ +-+.|
T Consensus 288 f~~a~~~~d~vvvV~~~ei~aaI~~l~edek~vvEpAgaaaLaai~~~-~~~~lk~~~vv~ilsG~-n~~~~ 357 (457)
T KOG1250|consen 288 FELAQKLVDRVVVVEDDEIAAAILRLFEDEKMVVEPAGAAALAAIYSG-KLNHLKGKKVVSILSGG-NIDFD 357 (457)
T ss_pred HHHHHhcCceEEEeccHHHHHHHHHHHHhhhheeccchHHHHHHHHhc-cccccCCceEEeecccC-CCCcc
Confidence 446678999999999999999999999999999999999999999987 44457899999999554 44444
|
|
| >PRK05638 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-55 Score=420.32 Aligned_cols=283 Identities=21% Similarity=0.234 Sum_probs=240.9
Q ss_pred HHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHH
Q 020528 11 DVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAA 90 (325)
Q Consensus 11 ~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~ 90 (325)
.+++++|+|||++++ ++..+|.+||+|+|++|||||||||++.+++.++.+.|. ++||++|+||||+|+|++|+
T Consensus 59 ~v~l~~G~TPLv~~~-~~~~~g~~l~~K~E~~nPtGSfKdR~a~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~aa 132 (442)
T PRK05638 59 IISLGEGGTPLIRAR-ISEKLGENVYIKDETRNPTGSFRDRLATVAVSYGLPYAA-----NGFIVASDGNAAASVAAYSA 132 (442)
T ss_pred ccccCCCCCcEEccc-chHHhCCeEEEEeCCCCCCCChHHHHHHHHHHHHHHcCC-----CEEEEeCCChHHHHHHHHHH
Confidence 478899999999984 665567799999999999999999999999999998875 77999999999999999999
Q ss_pred HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHHHh
Q 020528 91 AKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWK 170 (325)
Q Consensus 91 ~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~ 170 (325)
.+|++|+||||++++..|+.+++.+||+|+.+++ +++++.+.+++++++. ++|++++++||.+ ++||+|+++||++
T Consensus 133 ~~G~~~~i~vp~~~~~~k~~~~~~~GA~vi~v~~--~~~~~~~~a~~~~~~~-~~~~~~~~~np~~-~eG~~t~a~Ei~e 208 (442)
T PRK05638 133 RAGKEAFVVVPRKVDKGKLIQMIAFGAKIIRYGE--SVDEAIEYAEELARLN-GLYNVTPEYNIIG-LEGQKTIAFELWE 208 (442)
T ss_pred HcCCCEEEEEeCCCCHHHHHHHHhcCcEEEEECC--CHHHHHHHHHHHHHhC-CeEecCCCCChhH-hhhHHHHHHHHHH
Confidence 9999999999999999999999999999999985 6889999999988775 7999999999987 7899999999999
Q ss_pred hhCCCCCEEEEecCCchhHHHHHHHHHhhCC------CcEEEEEecCCCcccc----CCC--CCCcccccCCCCCCcc--
Q 020528 171 GTGGKIDALVSGIGTGGTVTGAGKYLKEHNP------EIKLYGVEPVESAVLS----GGK--PGPHKIQGIGAGFIPG-- 236 (325)
Q Consensus 171 ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~------~~~vigV~~~~~~~~~----~~~--~~~~~~~gl~~~~~~~-- 236 (325)
|++ ||+||+|+|+||+++|++++|+++.+ .+||++|||++++++. .+. ...+...++..+..+.
T Consensus 209 q~~--pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~i~~~prii~Vq~~~~~p~~~~~~~~~~~~~~t~a~gl~~~~p~~~~ 286 (442)
T PRK05638 209 EIN--PTHVIVPTGSGSYLYSIYKGFKELLEIGVIEEIPKLIAVQTERCNPIASEILGNKTKCNETKALGLYVKNPVMKE 286 (442)
T ss_pred HHC--cCEEEEeCCchHHHHHHHHHHHHHHhCCcccCCCeEEEEecCCCCHHHHHHhcCCCCCCCceeeeEeeCCCCCHH
Confidence 994 99999999999999999999999876 3799999999998764 222 1223334553332111
Q ss_pred ---ccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCC-CCCCEEEEEeCCCCCCCc
Q 020528 237 ---VLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE-NAGKLIVVVFPSFGERYL 306 (325)
Q Consensus 237 ---~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~i~t~~g~~~~ 306 (325)
...++.-+..+.|+|+++.++++.+++ +|+++||+||+++|+++++.+++. .++++||+++||+|.|+.
T Consensus 287 ~~~~~i~~~~g~~~~v~d~~i~~a~~~l~~-eGi~~epssaaa~Aa~~~~~~~g~i~~~~~Vv~i~tG~g~k~~ 359 (442)
T PRK05638 287 YVSEAIKESGGTAVVVNEEEIMAGEKLLAK-EGIFAELSSAVVMPALLKLGEEGYIEKGDKVVLVVTGSGLKGY 359 (442)
T ss_pred HHHHHHHHhCCEEEEECHHHHHHHHHHHHh-cCceecchHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCCCCC
Confidence 112234466888999888888777755 799999999999999999988764 568899999999999984
|
|
| >PRK08206 diaminopropionate ammonia-lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-55 Score=415.89 Aligned_cols=307 Identities=22% Similarity=0.218 Sum_probs=252.1
Q ss_pred cchhHHH--hhhhCCCCceecccccCCCC-ceEEEEeCCC-CCCCChhhHHHHHHHHHHHH--hCC--------------
Q 020528 6 SVIAKDV--TELIGKTPLVYLNRIVDGCV-ARIAAKLEMM-EPCSSVKDRIGYSMIADAEE--KGL-------------- 65 (325)
Q Consensus 6 ~~~~~~i--~~~~~~TPL~~~~~l~~~~~-~~l~~K~E~~-nptGS~K~R~a~~~~~~a~~--~g~-------------- 65 (325)
..+.+++ ....++|||+++++|++.+| .+||+|+|++ |||||||||++.+.+.++.. .+.
T Consensus 30 ~~a~~~~~~~~~~~~TPL~~~~~l~~~~G~~~v~~K~E~~q~ptgSFK~RG~~~~i~~~~~~~~~~~~~~~~~~~l~~~~ 109 (399)
T PRK08206 30 KKARAFHQSFPGYAPTPLVALPDLAAELGVGSILVKDESYRFGLNAFKALGGAYAVARLLAEKLGLDISELSFEELTSGE 109 (399)
T ss_pred HHHHHHHhcCCCCCCCCCcchHHHHHHhCCCcEEEecccCcCCCCChHHhhHHHHHHHHHHHHhCCCcccCCHHHhhhhH
Confidence 3456777 45889999999999998788 5999999998 59999999999988877653 221
Q ss_pred CC---CCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhC
Q 020528 66 IR---PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKT 142 (325)
Q Consensus 66 ~~---~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~ 142 (325)
+. ++ .+|+++|+||||+|+|++|+.+|++|+||||++++..|+.+++.+||+|+.+++ +++++...+++++++.
T Consensus 110 ~~~~~~~-~~vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~~~k~~~i~~~GA~Vi~v~~--~~~~~~~~a~~~~~~~ 186 (399)
T PRK08206 110 VREKLGD-ITFATATDGNHGRGVAWAAQQLGQKAVIYMPKGSSEERVDAIRALGAECIITDG--NYDDSVRLAAQEAQEN 186 (399)
T ss_pred HHHhccC-CEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHHc
Confidence 00 11 358999999999999999999999999999999999999999999999999995 6889999999988886
Q ss_pred CCeEEeC-----CCCC-CcchHhHHhchHHHHHhhhCC---CCCEEEEecCCchhHHHHHHHHHhhC--CCcEEEEEecC
Q 020528 143 PNSYVLQ-----QFEN-PANPKIHYETTGPEIWKGTGG---KIDALVSGIGTGGTVTGAGKYLKEHN--PEIKLYGVEPV 211 (325)
Q Consensus 143 ~~~~~~~-----~~~n-~~~~~~g~~t~~~Ei~~ql~~---~~D~iv~pvG~Gg~~aGi~~~~k~~~--~~~~vigV~~~ 211 (325)
++++++ ||+| +.+.++||+|+++||++|+.+ .||+||+|+|+||+++|++++||+++ +.+|||+|||+
T Consensus 187 -g~~~v~~~~~~~~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~Vep~ 265 (399)
T PRK08206 187 -GWVVVQDTAWEGYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVVEPD 265 (399)
T ss_pred -CCEEecCccccCcccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEEEECCC
Confidence 788886 6765 555688999999999999965 59999999999999999999999984 47999999999
Q ss_pred CCcccc----CCCCC------CcccccCCCCC---CccccccccCCeEEEeCHHHHHHHHHHHHH----HcCCeeecchH
Q 020528 212 ESAVLS----GGKPG------PHKIQGIGAGF---IPGVLDVNLLDETVQISSEEAIETAKLLAL----KEGLLVGISSG 274 (325)
Q Consensus 212 ~~~~~~----~~~~~------~~~~~gl~~~~---~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~----~~gi~~~p~sg 274 (325)
+++++. .+.+. .+..+++..+. .++.+.++.+|+++.|+|+|+++++++|++ ++|+++||++|
T Consensus 266 gs~~l~~s~~~g~~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~gi~vepsgA 345 (399)
T PRK08206 266 QADCLYQSAVDGKPVAVTGDMDTIMAGLACGEPNPLAWEILRNCADAFISCPDEVAALGMRILANPLGGDPPIVSGESGA 345 (399)
T ss_pred CCchHHHHHHcCCcEEeCCCCCceeccCCCCCcCHHHHHHHHHhCCEEEEECHHHHHHHHHHHhcccCCCCCeeecchHH
Confidence 998763 23221 23456665443 233445678999999999999999999996 78999999999
Q ss_pred HHHHHHHHHHhc---------CC-CCCCEEEEEeCCCCCCCcchhhhHHHHHHhc
Q 020528 275 AATAAAIQIAKR---------PE-NAGKLIVVVFPSFGERYLSSVLFESVKKEAE 319 (325)
Q Consensus 275 ~a~aa~~~~~~~---------~~-~~~~~vv~i~t~~g~~~~~~~~~~~~~~~~~ 319 (325)
+++|+++++.+. +. .++++||+|+| +|+++.++ |.+++.+++
T Consensus 346 a~lAa~~~~~~~~~~~~~~~~~~i~~~~~Vv~ilt-gG~~d~~~--~~~~~~~~~ 397 (399)
T PRK08206 346 VGLGALAALMTDPDYQELREKLGLDEDSRVLLIST-EGDTDPDR--YREIVWEGK 397 (399)
T ss_pred HHHHHHHHHHhcchhhHHHHhcCCCCCCEEEEEEC-CCCCCHHH--HHHHhcCCC
Confidence 999999976532 22 35789999998 78887775 566654443
|
|
| >KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-55 Score=375.28 Aligned_cols=313 Identities=38% Similarity=0.586 Sum_probs=272.7
Q ss_pred hhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHH
Q 020528 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAF 87 (325)
Q Consensus 8 ~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 87 (325)
..+-+...||+|||+++..|+...|++|+.|.|++||.||.|||.|.+++..|++.|++.+| -.|++.|+||+|+++|.
T Consensus 39 ~~~Gv~~~IGnTpliri~sLs~aTGcnIlaK~Ef~NPggS~KDRvAl~iir~Aee~GkL~~g-g~v~EGtaGsTgIslA~ 117 (391)
T KOG1481|consen 39 IVSGVEGAIGNTPLIRINSLSNATGCNILAKAEFLNPGGSVKDRVALYIIRTAEEKGKLVRG-GTVVEGTAGSTGISLAH 117 (391)
T ss_pred ccchhHHhhCCCceEEeeccccccccchhhhhhccCCCCChhhhhHHHHHHHHHHcCCcccC-ceEEecCCCccchhHHH
Confidence 34467788999999999999999999999999999999999999999999999999999998 56999999999999999
Q ss_pred HHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCC--ChhHHHHHHHHHHHhCC------CeEEeCCCCCCcchHh
Q 020528 88 MAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPAR--GMKGAVQKAEEIRDKTP------NSYVLQQFENPANPKI 159 (325)
Q Consensus 88 ~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~--~~~~~~~~a~~~~~~~~------~~~~~~~~~n~~~~~~ 159 (325)
.|+.+|++|+|+||.+.+.+|.+.++.+||+|+.|++.. +...-...|++.+++.+ ..++.+||+|+.||.+
T Consensus 118 v~~a~Gyk~~I~mPddqs~eK~~ile~LGA~V~rV~pa~i~dp~~yvn~Arr~an~~~~~~ngi~g~fAdQFeN~AN~~a 197 (391)
T KOG1481|consen 118 VARALGYKCHIYMPDDQSQEKSDILEFLGAEVHRVPPAPIVDPNHYVNQARRAANETPNASNGIRGWFADQFENVANWLA 197 (391)
T ss_pred hhhhcCcceEEECCChHHHHHHHHHHHhcceeeecCCcCccChhHHHHHHHHHhhhcccccCCcccchhhhhcCHHHHHH
Confidence 999999999999999999999999999999999998632 22344444555444432 2467899999999999
Q ss_pred HHhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCC-cEEEEEecCCCccccC-------------CC----C
Q 020528 160 HYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPE-IKLYGVEPVESAVLSG-------------GK----P 221 (325)
Q Consensus 160 g~~t~~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~-~~vigV~~~~~~~~~~-------------~~----~ 221 (325)
||.++|+|||.|..+.+|.+++.+|+|||++|+.+++|+..+. +.++..+|.++..+.. |. +
T Consensus 198 HyetTGPEIw~QtkGniDaFia~~GTGGTiaGVskyLkek~~~~v~~~laDPpGSGlYnkV~~GVmy~~~e~eG~r~r~q 277 (391)
T KOG1481|consen 198 HYETTGPEIWHQTKGNIDAFIAGTGTGGTIAGVSKYLKEKSDGRVAVFLADPPGSGLYNKVNYGVMYDHIETEGTRRRNQ 277 (391)
T ss_pred HhcCcCcHHHHhhcCCcceEEeccCCCcchHHHHHHHhhcCCCceEEEEeCCCCCchhhhhhhhhhhhhhhhcCcccCCC
Confidence 9999999999999999999999999999999999999999887 8999999999954321 21 2
Q ss_pred CCcccccCCCCCCcccc--ccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeC
Q 020528 222 GPHKIQGIGAGFIPGVL--DVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFP 299 (325)
Q Consensus 222 ~~~~~~gl~~~~~~~~~--~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t 299 (325)
..+..+||+...++.++ ..+++|+.+.|+|+++++..+.|..++|++++.||+....++.++++.. .+|++||+|+|
T Consensus 278 ~dti~EGIGinRiT~Nf~m~~~liD~a~rv~Deqai~Msr~Ll~~dGLFvGsSsa~N~VaAv~vAk~L-gpG~~iVtilC 356 (391)
T KOG1481|consen 278 VDTITEGIGINRITGNFQMAEDLIDDAMRVTDEQAINMSRYLLDNDGLFVGSSSALNCVAAVRVAKTL-GPGHTIVTILC 356 (391)
T ss_pred cchhhhcccccccccccccchhhhhhheecChHHHHHHHHHhhhcCceEecchhhHHHHHHHHHHHhc-CCCceEEEEEe
Confidence 34566888877666554 4678999999999999999999999999999999999999999998875 59999999999
Q ss_pred CCCCCCcchhhhHHHHHHhcCCCC
Q 020528 300 SFGERYLSSVLFESVKKEAESMVF 323 (325)
Q Consensus 300 ~~g~~~~~~~~~~~~~~~~~~~~~ 323 (325)
|+|.|+++. +|++-..++++++|
T Consensus 357 DsG~rh~sk-~~~~~~l~~~~l~p 379 (391)
T KOG1481|consen 357 DSGSRHLSK-LFSESFLESKKLSP 379 (391)
T ss_pred CCcchHHHH-hcCHHHHhhcCCCc
Confidence 999999998 67777777777765
|
|
| >TIGR00260 thrC threonine synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-54 Score=399.84 Aligned_cols=289 Identities=22% Similarity=0.224 Sum_probs=243.6
Q ss_pred hHHHhhhhCCCCceecccccCCCCc-eEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHH
Q 020528 9 AKDVTELIGKTPLVYLNRIVDGCVA-RIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAF 87 (325)
Q Consensus 9 ~~~i~~~~~~TPL~~~~~l~~~~~~-~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 87 (325)
...+...+++|||+++++++..++. +||+|+|++|||||||||++.+++.++.++|. .+||++|+||||+|+|+
T Consensus 14 ~~~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~-----~~vv~aSsGN~g~a~A~ 88 (328)
T TIGR00260 14 KDLVDLGEGVTPLFRSPALVANVGIKNLYVLELFHNPTLSFKDRGMAVALTKALELGN-----DTVLCASTGNTGAAAAA 88 (328)
T ss_pred hhhhhhccCCccCccchHHHHhcCCccEEehhhccCCchhhHhhhHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHH
Confidence 3457888999999999998877776 99999999999999999999999999998886 67999999999999999
Q ss_pred HHHHcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCC-CcchHhHHhchH
Q 020528 88 MAAAKGYRLIITMPAS-MSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFEN-PANPKIHYETTG 165 (325)
Q Consensus 88 ~a~~~g~~~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n-~~~~~~g~~t~~ 165 (325)
+|+.+|++|+|++|++ +++.|+++++.+||+|+.+++ +++++.+.+++++++. ++++++++++ +.+ +.||.+++
T Consensus 89 ~a~~~g~~~~v~~p~~~~s~~k~~~~~~~GA~Vi~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~n~~~~~-~~g~~t~~ 164 (328)
T TIGR00260 89 YAGKAGVKVVILYPAGKISLGKLAQALGYNAEVVAIDG--NFDDAQRLVKQLFGDK-EALGLNSVNSIPYR-LEGQKTYA 164 (328)
T ss_pred HhccCCCcEEEEECCCCCCHHHHHHHHhcCcEEEEecC--CHHHHHHHHHHHHhhc-CeeecccCCCCCeE-eeeehhHH
Confidence 9999999999999998 899999999999999999996 6889999999988876 4566665432 665 67899999
Q ss_pred HHHHhhhCC-CCCEEEEecCCchhHHHHHHHHHhhCC-----CcEEEEEecCCCcccc-----CCCCC-----CcccccC
Q 020528 166 PEIWKGTGG-KIDALVSGIGTGGTVTGAGKYLKEHNP-----EIKLYGVEPVESAVLS-----GGKPG-----PHKIQGI 229 (325)
Q Consensus 166 ~Ei~~ql~~-~~D~iv~pvG~Gg~~aGi~~~~k~~~~-----~~~vigV~~~~~~~~~-----~~~~~-----~~~~~gl 229 (325)
+||++|+++ .||+||+|+|+||+++|++.+|++... .+++++|||.+++++. .+++. .+..+++
T Consensus 165 ~Ei~~q~~~~~~d~iv~~vG~GG~~~G~~~~~~~~~~~g~~~~p~v~~Ve~~~~~~~~~~~~~~g~~~~~~~~~t~~~~l 244 (328)
T TIGR00260 165 FEAVEQLGWEAPDKVVVPVPNSGNFGAILKGFKEKKEGGLDSLPVKRGIQAEGAADIVRAFLESGQWEPIEDPATLSTAI 244 (328)
T ss_pred HHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHhcCCccCCceeEEEcCCCChHHHHHHcCCCcCcCCCCCccCcce
Confidence 999999974 799999999999999999999998521 2399999999995542 23222 2233444
Q ss_pred CCCCCcccc------ccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCC-CCCCEEEEEeCCCC
Q 020528 230 GAGFIPGVL------DVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE-NAGKLIVVVFPSFG 302 (325)
Q Consensus 230 ~~~~~~~~~------~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~i~t~~g 302 (325)
+.+. |.+. .+.+.|+.+.|+|+|++++++++++++|+++||+||+++++++++.+++. .++++||+++|++|
T Consensus 245 ~~~~-p~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~pssa~alaa~~~~~~~~~~~~~~~vv~i~tG~~ 323 (328)
T TIGR00260 245 DIGN-PANWERALELFRRSNGNAEDVSDEEILEAIKLLAREEGYFVEPHSAVSVAALLKLVEKGTADPAERVVCALTGNG 323 (328)
T ss_pred ecCC-CCCHHHHHHHHHhcCCcEEecCHHHHHHHHHHHHHhcCeeECchHHHHHHHHHHHHhCCCCCCCCcEEEEecCCC
Confidence 3332 3222 23568899999999999999999999999999999999999999887654 46789999999999
Q ss_pred CCCcc
Q 020528 303 ERYLS 307 (325)
Q Consensus 303 ~~~~~ 307 (325)
.|+.|
T Consensus 324 ~k~~~ 328 (328)
T TIGR00260 324 LKDPE 328 (328)
T ss_pred CCCCC
Confidence 98754
|
Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model. |
| >cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-53 Score=375.69 Aligned_cols=243 Identities=44% Similarity=0.626 Sum_probs=226.0
Q ss_pred CCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEE
Q 020528 19 TPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLII 98 (325)
Q Consensus 19 TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i 98 (325)
|||+++++|+...+.+||+|+|++|||||||||++.+++..+.++|.+ ++ ..||++|+||||.|+|++|+.+|++|++
T Consensus 1 TPl~~~~~l~~~~~~~l~~K~e~~~ptgS~K~R~a~~~l~~a~~~g~~-~~-~~vv~~ssGN~g~alA~~a~~~g~~~~v 78 (244)
T cd00640 1 TPLVRLKRLSKLGGANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKL-PK-GVIIESTGGNTGIALAAAAARLGLKCTI 78 (244)
T ss_pred CCeeEccccccccCCEEEEEecccCCcCCcHHHHHHHHHHHHHHcCCC-CC-CEEEEeCCcHHHHHHHHHHHHcCCCEEE
Confidence 899999999877778999999999999999999999999999998865 33 6799999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHHHhhhCC-CCC
Q 020528 99 TMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGG-KID 177 (325)
Q Consensus 99 ~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~ql~~-~~D 177 (325)
|+|.+.+..|+++++.+|++|+.+++ +++++.+.+++++++.++++|+++|+|+.+ +.|+.++++||.+|+.+ .||
T Consensus 79 ~~p~~~~~~~~~~~~~~Ga~v~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~-~~g~~~~~~Ei~~q~~~~~~d 155 (244)
T cd00640 79 VMPEGASPEKVAQMRALGAEVVLVPG--DFDDAIALAKELAEEDPGAYYVNQFDNPAN-IAGQGTIGLEILEQLGGQKPD 155 (244)
T ss_pred EECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhCCCCEecCCCCCHHH-HHHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999999999996 488999999999988558999999999887 68888999999999976 699
Q ss_pred EEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCCcccccCCCCCCccccccccCCeEEEeCHHHHHHH
Q 020528 178 ALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIET 257 (325)
Q Consensus 178 ~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~v~d~e~~~a 257 (325)
+||+|+|+||+++|++.+||+.+|.+|||+|++ +++.|+|+|++++
T Consensus 156 ~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~~----------------------------------~~~~v~d~~~~~a 201 (244)
T cd00640 156 AVVVPVGGGGNIAGIARALKELLPNVKVIGVEP----------------------------------EVVTVSDEEALEA 201 (244)
T ss_pred EEEEecCccHHHHHHHHHHHHhCCCCEEEEEee----------------------------------eEEEECHHHHHHH
Confidence 999999999999999999999999999999986 7899999999999
Q ss_pred HHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCC
Q 020528 258 AKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSF 301 (325)
Q Consensus 258 ~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~ 301 (325)
++++++++|+++||+||+++++++++.++. .++++||+++||+
T Consensus 202 ~~~l~~~~gi~~~pssa~~~aa~~~~~~~~-~~~~~vv~v~tg~ 244 (244)
T cd00640 202 IRLLAREEGILVEPSSAAALAAALKLAKKL-GKGKTVVVILTGG 244 (244)
T ss_pred HHHHHHHcCceECHhHHHHHHHHHHHHHhc-CCCCEEEEEeCCC
Confidence 999999999999999999999999988775 3678999999874
|
This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy |
| >KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-54 Score=364.22 Aligned_cols=294 Identities=22% Similarity=0.304 Sum_probs=257.6
Q ss_pred ccccchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhH
Q 020528 3 EEKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTG 82 (325)
Q Consensus 3 ~~~~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g 82 (325)
+.+..+++++.+++-+||++.++.|.+..|.+||+|+|++|.|||||.|||.+.+..+..+.. .+.|++.||||||
T Consensus 10 ~dv~~A~~rik~~ihkTpVlTS~~ln~~~g~~vfFKcE~fQKtGaFKfRGAlNav~~l~~ek~----~kgvithSSGNHa 85 (323)
T KOG1251|consen 10 EDVRAAHQRIKPFIHKTPVLTSENLNEKVGRHVFFKCENFQKTGAFKFRGALNAVSSLKAEKR----AKGVITHSSGNHA 85 (323)
T ss_pred HHHHHHHHHHHhhhccCceechhhHHHHhhhheEeehhhhhhccceehhhhHHHHHHhhHhhh----cCceEeecCCcHH
Confidence 455778999999999999999999988888999999999999999999999999988873332 2689999999999
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHh
Q 020528 83 IGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYE 162 (325)
Q Consensus 83 ~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~ 162 (325)
+|+|++|+.+|+|++|+||.++|..|+..++.||++|+++++ +.+++.+.++++.++. +++.++||++|.. +.|++
T Consensus 86 qAlalaAk~~giPa~IVvP~~AP~~Kv~a~~~Yga~ii~~e~--~~~sRE~va~~ltee~-g~~~i~Py~~p~v-IaGqg 161 (323)
T KOG1251|consen 86 QALALAAKILGIPATIVVPKDAPICKVAATRGYGANIIFCEP--TVESRESVAKDLTEET-GYYLIHPYNHPSV-IAGQG 161 (323)
T ss_pred HHHHHHHHhcCCCeEEEecCCChHHHHHHHHhcCceEEEecC--ccchHHHHHHHHHHhc-CcEEeCCCCCcce-eeccc
Confidence 999999999999999999999999999999999999999997 4567888899999988 7899999999987 89999
Q ss_pred chHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccc----cCCCC----C-CcccccCCC--
Q 020528 163 TTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVL----SGGKP----G-PHKIQGIGA-- 231 (325)
Q Consensus 163 t~~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~----~~~~~----~-~~~~~gl~~-- 231 (325)
|+++|+++|+ +.+|.+|+|+|+||+++|++...+.+.|+++|++|||++.+.- ..|.. . .+.++|...
T Consensus 162 TiA~ElleqV-g~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~veP~~a~d~~qsf~~g~I~~l~tp~TIADG~r~~~ 240 (323)
T KOG1251|consen 162 TIALELLEQV-GEIDALFVPVGGGGLLSGVALAAKSLKPSIEVYAVEPEAADDGQQSFLKGKIVHLDTPKTIADGVRTSH 240 (323)
T ss_pred hHHHHHHHhh-CccceEEEeecCcchhhHHHHHHhccCCCcEEEEecCcccchHHHHHhcCCeEecCCchhhhhhhhhcc
Confidence 9999999999 5899999999999999999999999999999999999887642 22322 2 234566643
Q ss_pred -CCCccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcch
Q 020528 232 -GFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSS 308 (325)
Q Consensus 232 -~~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~ 308 (325)
+...|++.++++|+++.|+|+|+.++++.+|++..+.+||+++.++|+++..-.+ ...+++.+|+ +|||.++..
T Consensus 241 lG~~t~pIir~~vddi~Tv~e~Ei~~~lk~~~ermK~~vEPTa~lgfAavl~~k~~--~~~K~igIiL-sGGNVD~~~ 315 (323)
T KOG1251|consen 241 LGPLTWPIIRDLVDDILTVSEDEIKEALKLIWERMKVVVEPTAALGFAAVLSHKFA--LNIKRIGIIL-SGGNVDLNS 315 (323)
T ss_pred ccccchHHHHHHhhhheeecHHHHHHHHHHHHHHHheeeccchhHHHHHHHhhhHH--hccCceEEEE-eCCcccccc
Confidence 3457788889999999999999999999999999999999999999999865333 3478899998 577876654
|
|
| >cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-53 Score=395.74 Aligned_cols=294 Identities=25% Similarity=0.252 Sum_probs=231.5
Q ss_pred hhHHHhhhhC-CCCceecccccCCC-CceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEe-cCCChhHHH
Q 020528 8 IAKDVTELIG-KTPLVYLNRIVDGC-VARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIE-PTSGNTGIG 84 (325)
Q Consensus 8 ~~~~i~~~~~-~TPL~~~~~l~~~~-~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~-~ssGN~g~a 84 (325)
+++...++++ +|||+++++|+..+ +.+||+|+|++|||||||||.+...+..+.++|. ..+|+ +|+||||+|
T Consensus 23 ~~~~~~~~~~~~TPL~~l~~l~~~~g~~~l~~K~E~~nptgS~K~R~a~~~~~~a~~~g~-----~~vv~~~ssGN~g~a 97 (365)
T cd06446 23 LRELYKDYVGRPTPLYRAKRLSEYLGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK-----KRVIAETGAGQHGVA 97 (365)
T ss_pred HHHHhhccCCCCCCceehHHHHHhhCCceEEEEeccCCCccchhHHHHHHHHHHHHHcCC-----CeEEEecCchHHHHH
Confidence 3444455554 89999999998766 5799999999999999999999999999999886 34454 789999999
Q ss_pred HHHHHHHcCCeEEEEecCCCC---HHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHHH-HHhC-CCeEEeCCCC----CC
Q 020528 85 LAFMAAAKGYRLIITMPASMS---LERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEI-RDKT-PNSYVLQQFE----NP 154 (325)
Q Consensus 85 lA~~a~~~g~~~~i~~p~~~~---~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~-~~~~-~~~~~~~~~~----n~ 154 (325)
+|++|+.+|++|+||+|...+ ..++.+++.+||+|+.++.. ..++++...+.+. .++. ..+|+++++. ++
T Consensus 98 lA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~~~~GAeV~~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~~~~~~~~~ 177 (365)
T cd06446 98 TATACALFGLECEIYMGAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKDAISEAIRDWVTNVEDTHYLLGSVVGPHPYP 177 (365)
T ss_pred HHHHHHHhCCCeEEEEcCCccccccchHHHHHHCCCEEEEeCCCCCcHHHHHHHHHHHHHhccCCceEecccccCCCCch
Confidence 999999999999999998643 36788999999999999863 2356665555444 3332 2344444331 23
Q ss_pred cchHhHHhchHHHHHhhhCC----CCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCC--------CC-
Q 020528 155 ANPKIHYETTGPEIWKGTGG----KIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGG--------KP- 221 (325)
Q Consensus 155 ~~~~~g~~t~~~Ei~~ql~~----~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~--------~~- 221 (325)
.++++|++++++||++|+.+ .||+||+|+|+||+++|++++++. .+++|||+|||.+++.+... ..
T Consensus 178 ~~~~ag~~t~~~EI~~Q~~~~~~~~~D~vv~~vG~GGt~~Gi~~g~~~-~~~~~vigVep~gs~~~~~~~~~~~~~g~~~ 256 (365)
T cd06446 178 NMVRDFQSVIGEEAKKQILEKEGELPDVVIACVGGGSNAAGLFYPFIN-DKDVKLIGVEAGGCGLETGGHAAYLFGGTAG 256 (365)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHh-CCCceEEEEcCCCCccccccceeeccCCCcc
Confidence 35688999999999999852 699999999999999999998887 56899999999998876421 11
Q ss_pred -------------------CCcccccCCCCC-Ccc--ccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHH
Q 020528 222 -------------------GPHKIQGIGAGF-IPG--VLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAA 279 (325)
Q Consensus 222 -------------------~~~~~~gl~~~~-~~~--~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa 279 (325)
..+.+++++.+. .|. .+..+.+|+.+.|+|+|++++++++++++|+++||+||+++++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~r~la~~eGi~~epssgaalAa 336 (365)
T cd06446 257 VLHGLKMYTLQDEDGQIVPPHSISAGLDYPGVGPEHAYLKDSGRVEYVAVTDEEALEAFKLLARTEGIIPALESSHAIAY 336 (365)
T ss_pred eecchhhhccccccCCCCCcccccccccCCCCCHHHHHHHHhCCceEEEeChHHHHHHHHHHHHhcCceeCccchHHHHH
Confidence 011223443221 121 1334568999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCEEEEEeCCCCCCCcch
Q 020528 280 AIQIAKRPENAGKLIVVVFPSFGERYLSS 308 (325)
Q Consensus 280 ~~~~~~~~~~~~~~vv~i~t~~g~~~~~~ 308 (325)
++++.++. .++++||+|+||+|+||+++
T Consensus 337 ~~~~~~~~-~~~~~Vv~i~~g~G~k~~~~ 364 (365)
T cd06446 337 AIKLAKKL-GKEKVIVVNLSGRGDKDLQT 364 (365)
T ss_pred HHHHHHhc-CCCCeEEEEeCCCCcccccc
Confidence 99988765 36789999999999999986
|
In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions. |
| >PRK13028 tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-53 Score=393.57 Aligned_cols=294 Identities=25% Similarity=0.253 Sum_probs=235.1
Q ss_pred HHHhhhhC-CCCceecccccCCC-CceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHH
Q 020528 10 KDVTELIG-KTPLVYLNRIVDGC-VARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAF 87 (325)
Q Consensus 10 ~~i~~~~~-~TPL~~~~~l~~~~-~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 87 (325)
..+..++| +|||+++++|++.+ +++||+|+|++|||||||+|.+..++..+++.|+ ...|+++|+||||+|+|+
T Consensus 53 ~~~~~~~g~pTPL~~~~~Ls~~~Gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~G~----~~vI~etgsGnhG~A~A~ 128 (402)
T PRK13028 53 YLLKHYVGRPTPLYHAKRLSEELGGAQIYLKREDLNHTGAHKINNCLGQALLAKRMGK----KRLIAETGAGQHGVATAT 128 (402)
T ss_pred HHHHHhCCCCCCeeehHHhHhhcCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHH
Confidence 44456777 69999999999877 5799999999999999999999999999999886 245667999999999999
Q ss_pred HHHHcCCeEEEEecCCCCH---HHHHHHHHcCCEEEEeCC-CCChhHHHHHHHH-HHHhCCCeEEeC-CCC----CCcch
Q 020528 88 MAAAKGYRLIITMPASMSL---ERRMVLLAFGAELVLTDP-ARGMKGAVQKAEE-IRDKTPNSYVLQ-QFE----NPANP 157 (325)
Q Consensus 88 ~a~~~g~~~~i~~p~~~~~---~~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a~~-~~~~~~~~~~~~-~~~----n~~~~ 157 (325)
+|+++|++|+||||+.... .++.+|+.+||+|+.++. ..+++++.+.+.+ +.++.++.+|+. +.. +|.++
T Consensus 129 aaa~~Gl~~~I~m~~~d~~~q~~nv~~mr~~GAeVi~v~~g~~~~~~a~~~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v 208 (402)
T PRK13028 129 AAALFGLECEIYMGEVDIERQHPNVFRMKLLGAEVVPVTRGGRTLKEAVDSAFEDYLKDPDNTHYAIGSVVGPHPFPMMV 208 (402)
T ss_pred HHHHcCCCEEEEECCCcchhhHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHhcCCcEEEecCcCCCCCcHHHH
Confidence 9999999999999986333 568899999999999984 3468888888855 444433566663 221 13344
Q ss_pred HhHHhchHHHHHhhhC----CCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCC--------CccccCCCCC---
Q 020528 158 KIHYETTGPEIWKGTG----GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVE--------SAVLSGGKPG--- 222 (325)
Q Consensus 158 ~~g~~t~~~Ei~~ql~----~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~--------~~~~~~~~~~--- 222 (325)
..||++++.|+.+|+. ..||+||+|+|+||+++|++.+|++ .|++|||||||.+ ++++..+.+.
T Consensus 209 ~~~q~tig~Ei~~Q~~~~~g~~pD~vV~~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~aa~l~~g~~g~~~ 287 (402)
T PRK13028 209 RDFQSVIGEEAREQFLEMTGRLPDAVVACVGGGSNAIGLFSAFLD-DESVRLVGVEPAGRGLDLGEHAATLTLGKPGVIH 287 (402)
T ss_pred HHHhHHHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHHHh-CCCceEEEEecCCCCcccccccccccCCCcceec
Confidence 5699999999999973 3699999999999999999999986 4899999999999 6666554431
Q ss_pred -----------------CcccccCCCCCC-ccc--cccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHH
Q 020528 223 -----------------PHKIQGIGAGFI-PGV--LDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQ 282 (325)
Q Consensus 223 -----------------~~~~~gl~~~~~-~~~--~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~ 282 (325)
.+...+|..+.+ |.. +.....++.+.|+|+|+++++++|+++|||+++++||+++|++++
T Consensus 288 g~~~~~l~~~~g~~~~~~sia~gl~~~~vgp~~~~l~~~~~~~~v~VtD~eal~a~~~La~~eGIi~~~~sa~alA~a~~ 367 (402)
T PRK13028 288 GFKSYVLQDEDGEPAPVHSIAAGLDYPGVGPEHAYLKDIGRVEYVTATDEEALDAFFLLSRTEGIIPALESSHAVAYAIK 367 (402)
T ss_pred ccceeeccccCCCcCCccceeccccCCCCCHHHHHHHHhcCcEEEEECHHHHHHHHHHHHHhcCCeeccHHHHHHHHHHH
Confidence 112234432221 222 223445789999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCEEEEEeCCCCCCCcchh
Q 020528 283 IAKRPENAGKLIVVVFPSFGERYLSSV 309 (325)
Q Consensus 283 ~~~~~~~~~~~vv~i~t~~g~~~~~~~ 309 (325)
++++. .++++||+++||+|+||++++
T Consensus 368 ~a~~l-~~~~~VVv~lsG~G~kd~~~~ 393 (402)
T PRK13028 368 LAPEL-SKDETILVNLSGRGDKDIDYV 393 (402)
T ss_pred hhhhc-CCCCeEEEEECCCCccCHHHH
Confidence 87653 468899999999999999873
|
|
| >PRK04346 tryptophan synthase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-52 Score=390.64 Aligned_cols=293 Identities=25% Similarity=0.307 Sum_probs=230.7
Q ss_pred HHHhhhhCC-CCceecccccCCC-CceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHH
Q 020528 10 KDVTELIGK-TPLVYLNRIVDGC-VARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAF 87 (325)
Q Consensus 10 ~~i~~~~~~-TPL~~~~~l~~~~-~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 87 (325)
..+.+++|+ |||+++++|++.+ +++||+|+|++|||||||+|++...+..+++.|+ .+.|+++|+||||.|+|+
T Consensus 49 ~~~~~~~grpTPL~~~~~Ls~~~gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~Gk----~~vIaetgaGnhG~A~A~ 124 (397)
T PRK04346 49 YLLKNYVGRPTPLYFAERLSEHLGGAKIYLKREDLNHTGAHKINNVLGQALLAKRMGK----KRIIAETGAGQHGVATAT 124 (397)
T ss_pred HHHHHhcCCCCCceEhHHHHHHcCCCeEEEEECCCCCccchHHHHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHH
Confidence 444577884 9999999999877 5899999999999999999999999999999886 245666899999999999
Q ss_pred HHHHcCCeEEEEecCC-CC--HHHHHHHHHcCCEEEEeCC-CCChhHHHHHHHH-HHHhCCCeEEe-CCCCC----Ccch
Q 020528 88 MAAAKGYRLIITMPAS-MS--LERRMVLLAFGAELVLTDP-ARGMKGAVQKAEE-IRDKTPNSYVL-QQFEN----PANP 157 (325)
Q Consensus 88 ~a~~~g~~~~i~~p~~-~~--~~~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a~~-~~~~~~~~~~~-~~~~n----~~~~ 157 (325)
+|+++|++|+||||+. .+ ..++.+|+.+||+|+.++. ..+++++.+.+.+ +.++.++.+|+ .++.+ |.+.
T Consensus 125 ~aa~~Gl~c~I~mp~~d~~rq~~nv~~m~~lGA~Vv~v~~g~~~l~da~~ea~~~~~~~~~~~~y~~gs~~gphp~p~~v 204 (397)
T PRK04346 125 AAALLGLECVIYMGAEDVERQALNVFRMKLLGAEVVPVTSGSRTLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMV 204 (397)
T ss_pred HHHHcCCcEEEEecCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEeCCcCCCCCchHHH
Confidence 9999999999999985 33 3678899999999999984 3467777666655 44443344554 33322 2334
Q ss_pred HhHHhchHHHHHhhhC----CCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCc--------cccCCCCC---
Q 020528 158 KIHYETTGPEIWKGTG----GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESA--------VLSGGKPG--- 222 (325)
Q Consensus 158 ~~g~~t~~~Ei~~ql~----~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~--------~~~~~~~~--- 222 (325)
..||++++.||.+|+. ..||+||+|+|+||+++|++.+|++ .|.+|||||||.++. ++..+.+.
T Consensus 205 ~~~q~tig~Ei~eQ~~~~~g~~pD~vVa~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~~a~l~~g~~g~~~ 283 (397)
T PRK04346 205 RDFQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGKGLETGKHAATLTKGRPGVLH 283 (397)
T ss_pred HHhcchHHHHHHHHHHHhhCCCCCEEEEecCccHhHHHHHHHHhh-CCCCeEEEEecCCCccccccccchhhcCCeeeec
Confidence 5699999999999973 3699999999999999999999976 889999999999862 23333221
Q ss_pred ----------------Cc-ccccCCCCCC-cc--ccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHH
Q 020528 223 ----------------PH-KIQGIGAGFI-PG--VLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQ 282 (325)
Q Consensus 223 ----------------~~-~~~gl~~~~~-~~--~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~ 282 (325)
.+ ...||..+.+ |. .+.....++.+.|+|+|+++++++|+++|||+++++||+|+|++++
T Consensus 284 g~~~~~~~~~~g~~~~~~sis~gL~~pgvgp~~~~l~~~~~~~~v~VtD~eal~a~~~L~~~eGIi~~~esa~AlA~a~k 363 (397)
T PRK04346 284 GAKTYLLQDEDGQILETHSISAGLDYPGVGPEHAYLKDIGRAEYVSITDDEALEAFQLLSRLEGIIPALESSHALAYALK 363 (397)
T ss_pred cccceecccCCCccCCCceeeccccCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCCEeccHHHHHHHHHHH
Confidence 11 1133322221 21 1233456789999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCEEEEEeCCCCCCCcch
Q 020528 283 IAKRPENAGKLIVVVFPSFGERYLSS 308 (325)
Q Consensus 283 ~~~~~~~~~~~vv~i~t~~g~~~~~~ 308 (325)
+++.. .++++||+++||+|+||+++
T Consensus 364 la~~l-~~~~~Vvv~lsGrG~kd~~~ 388 (397)
T PRK04346 364 LAPTL-GKDQIIVVNLSGRGDKDVFT 388 (397)
T ss_pred hhhhc-CCCCeEEEEeCCCCccCHHH
Confidence 86653 36789999999999999987
|
|
| >TIGR00263 trpB tryptophan synthase, beta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-52 Score=392.76 Aligned_cols=293 Identities=21% Similarity=0.259 Sum_probs=228.9
Q ss_pred HHHhhhhC-CCCceecccccCCCC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHH
Q 020528 10 KDVTELIG-KTPLVYLNRIVDGCV-ARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAF 87 (325)
Q Consensus 10 ~~i~~~~~-~TPL~~~~~l~~~~~-~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 87 (325)
+.+..+++ +|||+++++|++.+| .+||+|+|++|||||||||++...+..+++.|. ...|+++|+||||+|+|+
T Consensus 41 ~~~~~~~~~~TPL~~~~~l~~~~g~~~iy~K~E~~nptGS~K~R~a~~~~~~a~~~g~----~~vi~e~ssGN~G~alA~ 116 (385)
T TIGR00263 41 ELLRNYAGRPTPLTFAPNLTEALGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----KRIIAETGAGQHGVATAT 116 (385)
T ss_pred HHHHHhCCCCCCceehHHHHHHhCCCeEEEEeCCCCCCccchHHHHHHHHHHHHHcCC----CEEEEEcCcHHHHHHHHH
Confidence 34445565 899999999987776 799999999999999999999999999988885 245567999999999999
Q ss_pred HHHHcCCeEEEEecCC-CCH--HHHHHHHHcCCEEEEeCCC-CChhHHHHH-HHHHHHhCCCeEEe-CCCCC----Ccch
Q 020528 88 MAAAKGYRLIITMPAS-MSL--ERRMVLLAFGAELVLTDPA-RGMKGAVQK-AEEIRDKTPNSYVL-QQFEN----PANP 157 (325)
Q Consensus 88 ~a~~~g~~~~i~~p~~-~~~--~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~-a~~~~~~~~~~~~~-~~~~n----~~~~ 157 (325)
+|+++|++|+||||+. .+. .++++|+.+||+|+.++.. ..++++.+. ++++.++.++.+|+ +++.| +.++
T Consensus 117 ~a~~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA~Vv~v~~~~~~~~~a~~~~~~~~~~~~~~~~y~~~~~~~~~p~~~~~ 196 (385)
T TIGR00263 117 AAALLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVTSGSGTLKDAVNEALRDWVTSVDDTHYVLGSAVGPHPFPTMV 196 (385)
T ss_pred HHHHcCCCEEEEecCCcccccchHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCceEEeCCcCCCCCchHHH
Confidence 9999999999999985 443 6788999999999999853 346666444 44445553455555 44443 2344
Q ss_pred HhHHhchHHHHHhhhC----CCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCc--------cccCCCCC---
Q 020528 158 KIHYETTGPEIWKGTG----GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESA--------VLSGGKPG--- 222 (325)
Q Consensus 158 ~~g~~t~~~Ei~~ql~----~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~--------~~~~~~~~--- 222 (325)
..|++|+++||++|+. ..||+||+|+|+||+++|++.++.. .|++|||+|||+++. .+..+.+.
T Consensus 197 ~~~~~t~g~Ei~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv~~~~~~-~~~~~iigVe~~gs~~~~~~~~~~~~~g~~~~~~ 275 (385)
T TIGR00263 197 RDFQSVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGIFYAFID-DPSVQLIGVEAGGLGIDTDKHAATLAKGSPGVLH 275 (385)
T ss_pred HHHhhHHHHHHHHHHHhhhCCCCCEEEEEeCchHHHHHHHHHHhh-CCCCeEEEEEeCCCcccchhhhhhhhcCCeeEec
Confidence 6899999999999973 2589999999999999999998865 699999999999862 23333221
Q ss_pred -----------------CcccccCCCCCC-ccc--cccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHH
Q 020528 223 -----------------PHKIQGIGAGFI-PGV--LDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQ 282 (325)
Q Consensus 223 -----------------~~~~~gl~~~~~-~~~--~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~ 282 (325)
.+..+++..... |.. +.....|+++.|+|+|+++++++|+++||++++|+||++++++++
T Consensus 276 ~~~~~~~~~~~~~~~~~~tia~gl~~~~~~p~~~~~~~~~~~~~v~Vsd~e~~~a~~~la~~egi~~~~ssaaalaa~~~ 355 (385)
T TIGR00263 276 GMKTYLLQDEDGQILEAHSVSAGLDYPGVGPEHAYLHETGRATYEAITDDEALEAFKLLSRNEGIIPALESSHALAHLEK 355 (385)
T ss_pred CcccccccCCCCcccccceeeccccCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHhcCCeechHHHHHHHHHHH
Confidence 011233322211 211 233456789999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCEEEEEeCCCCCCCcch
Q 020528 283 IAKRPENAGKLIVVVFPSFGERYLSS 308 (325)
Q Consensus 283 ~~~~~~~~~~~vv~i~t~~g~~~~~~ 308 (325)
++++. .++++||+++||+|++|+++
T Consensus 356 ~~~~l-~~~~~Vv~i~~g~G~~d~~~ 380 (385)
T TIGR00263 356 IAPTL-PKDQIVVVNLSGRGDKDIFT 380 (385)
T ss_pred HHHhC-CCCCeEEEEeCCCCcCCHHH
Confidence 87652 36889999999999999886
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model. |
| >PLN02618 tryptophan synthase, beta chain | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-52 Score=389.51 Aligned_cols=296 Identities=22% Similarity=0.284 Sum_probs=232.4
Q ss_pred hhHHHhhhhC-CCCceecccccCCC------CceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCCh
Q 020528 8 IAKDVTELIG-KTPLVYLNRIVDGC------VARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGN 80 (325)
Q Consensus 8 ~~~~i~~~~~-~TPL~~~~~l~~~~------~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN 80 (325)
..+.+..++| +|||+++++|++.+ |++||+|+|++|||||||+|++...+..+++.|+ ...|+++|+||
T Consensus 55 ~~~~l~~~vGr~TPL~~~~~Ls~~~g~~~~~g~~IylK~E~lnptGS~K~R~a~~~~l~A~~~g~----~~vIaesgaGN 130 (410)
T PLN02618 55 LAGILKDYVGRETPLYFAERLTEHYKRADGEGPEIYLKREDLNHTGAHKINNAVAQALLAKRLGK----KRIIAETGAGQ 130 (410)
T ss_pred HHHHHHHhcCCCCceeEhhhHHHHhccccCCCCEEEEEeCCCCCccchHHHHHHHHHHHHHHcCC----CEEEEEcCcHH
Confidence 4466678897 89999999999755 4799999999999999999999999998988885 24455667899
Q ss_pred hHHHHHHHHHHcCCeEEEEecCCC---CHHHHHHHHHcCCEEEEeCC-CCChhHHHHHH-HHHHHhCCCeEEe-CCCCC-
Q 020528 81 TGIGLAFMAAAKGYRLIITMPASM---SLERRMVLLAFGAELVLTDP-ARGMKGAVQKA-EEIRDKTPNSYVL-QQFEN- 153 (325)
Q Consensus 81 ~g~alA~~a~~~g~~~~i~~p~~~---~~~~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a-~~~~~~~~~~~~~-~~~~n- 153 (325)
||.|+|++|+++|++|+||||+.. +..|+.+|+.+||+|+.++. ..+++++...+ +++.++.++.+|+ .+..+
T Consensus 131 hG~AlA~aaa~~Gl~~~I~m~~~~~~~~~~nv~~mr~lGA~Vi~v~~g~~~~~dA~~ea~~~~~~~~~~~~yi~gs~~gp 210 (410)
T PLN02618 131 HGVATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGP 210 (410)
T ss_pred HHHHHHHHHHHcCCcEEEEEcCCchhhhhhhHHHHHHCCCEEEEEeCCCCCHHHHHHHHHHHHHhccCCCEEEecCcCCC
Confidence 999999999999999999999863 35678899999999999964 34677877444 4566553345555 32221
Q ss_pred ---CcchHhHHhchHHHHHhhh----CCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCC--------ccccC
Q 020528 154 ---PANPKIHYETTGPEIWKGT----GGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVES--------AVLSG 218 (325)
Q Consensus 154 ---~~~~~~g~~t~~~Ei~~ql----~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~--------~~~~~ 218 (325)
+.+...++++++.||.+|+ +..||+||+|+|+||+++|++++|+. .|++|||||||.++ .++..
T Consensus 211 ~P~~~~v~~~q~tig~Ei~~Q~~~~~g~~pD~VV~~VGgGg~~~Gi~~~f~~-~~~v~ligVEa~G~~~~~~~~~a~l~~ 289 (410)
T PLN02618 211 HPYPMMVRDFHSVIGKETRRQAMEKWGGKPDVLVACVGGGSNAMGLFHEFID-DEDVRLIGVEAAGFGLDSGKHAATLTK 289 (410)
T ss_pred CCCHHHHHHhhHHHHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHHh-CCCceEEEEEeCCCcccccccccchhc
Confidence 2233579999999998776 34699999999999999999999975 78999999999997 23333
Q ss_pred CCCC--------------------CcccccCCCCCC-cc--ccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHH
Q 020528 219 GKPG--------------------PHKIQGIGAGFI-PG--VLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGA 275 (325)
Q Consensus 219 ~~~~--------------------~~~~~gl~~~~~-~~--~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~ 275 (325)
+++. .+..+||..+.+ |. .+.....|+.+.|+|+|+++++++|+++|||+++++|++
T Consensus 290 g~~gv~~g~~~~~l~~~~g~~~~~~sia~gl~~pgvgp~~~~l~~~~~~~~v~VtD~Eal~a~~~La~~eGIi~~~sSa~ 369 (410)
T PLN02618 290 GEVGVLHGAMSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDTGRAEYYSVTDEEALEAFQRLSRLEGIIPALETSH 369 (410)
T ss_pred CCcceeccccccccccccCCCCCCcchhhhhcCCCCcHHHHHHHhhcCcEEEEECHHHHHHHHHHHHHHcCceEchhHHH
Confidence 3221 112233332211 22 122335789999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchh
Q 020528 276 ATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSV 309 (325)
Q Consensus 276 a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~ 309 (325)
++++++++++.. .++++||++++|+|+||++++
T Consensus 370 a~a~a~~~a~~l-~~~~~iVv~lsgrG~Kd~~~v 402 (410)
T PLN02618 370 ALAYLEKLCPTL-PDGTKVVVNCSGRGDKDVNTA 402 (410)
T ss_pred HHHHHHHHhHhc-CCCCEEEEEeCCCCcCCHHHH
Confidence 999999998753 468899999999999999984
|
|
| >TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-52 Score=389.91 Aligned_cols=297 Identities=24% Similarity=0.282 Sum_probs=231.2
Q ss_pred hhHHHhhhhCCCCceecccccCCCC--ceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEE-ecCCChhHHH
Q 020528 8 IAKDVTELIGKTPLVYLNRIVDGCV--ARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLI-EPTSGNTGIG 84 (325)
Q Consensus 8 ~~~~i~~~~~~TPL~~~~~l~~~~~--~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv-~~ssGN~g~a 84 (325)
+.+.+....++|||+++++|++.++ ++||+|+|++|||||||+|++..++..+.++|. +.++ ++|+||||+|
T Consensus 58 v~~~~~l~g~pTPL~r~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~~~~a~~~G~-----~~~vtetssGN~G~a 132 (419)
T TIGR01415 58 VLKRYAQIGRPTPLIRAKGLEELLGTPARIYYKYESVSPTGSHKINTAIAQAYYAKIEGA-----KRLVTETGAGQWGSA 132 (419)
T ss_pred HHHHHHhcCCCCCeEEccchhhhhCCCceEEEEECCCCCCCCcHHHHHHHHHHHHHHcCC-----CeEEEecCchHHHHH
Confidence 3344444445899999999987665 699999999999999999999999999999997 3455 4688999999
Q ss_pred HHHHHHHcCCeEEEEecCCC---CHHHHHHHHHcCCEEEEeCCCCChhH------------------HHHHHHHHHHhCC
Q 020528 85 LAFMAAAKGYRLIITMPASM---SLERRMVLLAFGAELVLTDPARGMKG------------------AVQKAEEIRDKTP 143 (325)
Q Consensus 85 lA~~a~~~g~~~~i~~p~~~---~~~~~~~~~~~Ga~v~~~~~~~~~~~------------------~~~~a~~~~~~~~ 143 (325)
+|++|+.+|++|+||||+.. ++.|+.+|+.+||+|+.++.+ +++ ++..+.+.+++.+
T Consensus 133 lA~aaa~~Gl~~~V~mp~~s~~~k~~k~~~m~~~GA~Vi~~~~~--~~~~~r~~~~~~p~~~gsl~~ai~~a~e~a~~~~ 210 (419)
T TIGR01415 133 LSLAGALFGLECKVFMVRVSFNQKPYRKYLMELYGAEVIPSPSE--FTEFGREVLKEDPDHPGSLGIAISEAIEYALSDE 210 (419)
T ss_pred HHHHHHHcCCcEEEEEeCCCcccCHHHHHHHHHcCCEEEEECCc--hhhHHHHhhhcccccccchHHHHHHHHHHHHhCC
Confidence 99999999999999999853 668899999999999999963 222 3556677766643
Q ss_pred -CeEEeCCCCCCcchHhHHhchHHHHHhhhCC---CCCEEEEecCCchhHHHHHHHHHhh----CCCcEEEEEecCCCcc
Q 020528 144 -NSYVLQQFENPANPKIHYETTGPEIWKGTGG---KIDALVSGIGTGGTVTGAGKYLKEH----NPEIKLYGVEPVESAV 215 (325)
Q Consensus 144 -~~~~~~~~~n~~~~~~g~~t~~~Ei~~ql~~---~~D~iv~pvG~Gg~~aGi~~~~k~~----~~~~~vigV~~~~~~~ 215 (325)
..|+++++.|+ ...||.++++||++|+.. .||+||+|+|+||+++|++.+|++. .+++|||+|||++++.
T Consensus 211 ~~~y~~~~~~n~--~~~h~~~ig~Ei~~Ql~~~g~~pD~vv~~vG~Gg~~~Gi~~~f~~~~l~g~~~~rviaVep~~~~~ 288 (419)
T TIGR01415 211 DTKYSLGSVLNH--VLLHQTVIGLEAKKQMEEAGEDPDVIIGCVGGGSNFAGLAFPFVADKLSGKIDRRFIAAEPKACPT 288 (419)
T ss_pred CCEEEeCCCCcH--HHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCchHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCChh
Confidence 45666666553 478999999999999953 5999999999999999999888432 2579999999999988
Q ss_pred ccCCCC----------CC-cccccCCCCCCcccc-----------------ccccCCeEEEeCHHHHHHHHHHHHHHcCC
Q 020528 216 LSGGKP----------GP-HKIQGIGAGFIPGVL-----------------DVNLLDETVQISSEEAIETAKLLALKEGL 267 (325)
Q Consensus 216 ~~~~~~----------~~-~~~~gl~~~~~~~~~-----------------~~~~~d~~~~v~d~e~~~a~~~l~~~~gi 267 (325)
+..+.. .+ ....+++...+|... ..+.+++.+.|+|+|+++++++|+++||+
T Consensus 289 l~~g~~~yd~~~~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~~~~~~~~~l~~~~~~~~~~V~d~e~~~a~r~la~~eGi 368 (419)
T TIGR01415 289 LTRGEYRYDFGDTAGLTPLLKMYTLGHDFIPPPIHAGGLRYHGVAPTLSLLVNLGIVEARAYDQEEAFEAAVIFAKTEGI 368 (419)
T ss_pred hhcCcccccccccccCCcceeeeecCCCCCCcceeccccccCCccHHHHHHhhcCceEEEEECHHHHHHHHHHHHHhcCC
Confidence 865431 11 122344444333221 12344578899999999999999999999
Q ss_pred eeecchHHHHHHHHHHHhcCCCCC--CEEEEEeCCCCCCCcchhhhHHHH
Q 020528 268 LVGISSGAATAAAIQIAKRPENAG--KLIVVVFPSFGERYLSSVLFESVK 315 (325)
Q Consensus 268 ~~~p~sg~a~aa~~~~~~~~~~~~--~~vv~i~t~~g~~~~~~~~~~~~~ 315 (325)
+++|+||++++++++++++.+..+ ++||+++|++|+++++ .|+++.
T Consensus 369 ~~epssa~alaaai~~a~~~~~~~~~~vvv~~lsG~G~~d~~--~y~~~~ 416 (419)
T TIGR01415 369 VPAPESAHAIAAAIDEARKCRETGEEKVILFNLSGHGLLDLK--AYAKYL 416 (419)
T ss_pred ccccHHHHHHHHHHHHHHhcCcCCCCeEEEEEcCCCCcCCHH--HHHHHh
Confidence 999999999999999887764223 3566777766776544 476654
|
This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found. |
| >TIGR03844 cysteate_syn cysteate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-53 Score=395.16 Aligned_cols=287 Identities=16% Similarity=0.085 Sum_probs=238.1
Q ss_pred hhhhCCCCceecccccCCCCc-eEEEEeCC-------CCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHH
Q 020528 13 TELIGKTPLVYLNRIVDGCVA-RIAAKLEM-------MEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIG 84 (325)
Q Consensus 13 ~~~~~~TPL~~~~~l~~~~~~-~l~~K~E~-------~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 84 (325)
....|.|||+++++|++.+|. +||+|+|+ +|||||||||++.+.+.++.+.|. +.||++|+||||+|
T Consensus 57 ~~~~g~tpl~~~~~L~~~lG~~~v~~K~e~~~~K~E~~npTGSFKdRga~~~i~~a~~~g~-----~~Vv~aSsGN~g~a 131 (398)
T TIGR03844 57 LRTRGGPVTYKSEGLARELGLSDLYITFSGYWPERGAFMRTCSFKELEALPTMQRLKERGG-----KTLVVASAGNTGRA 131 (398)
T ss_pred CCCCCCCceeehHHHHHHhCCCeEEEEecCcccchhccCCccccHHHHHHHHHHHHHHcCC-----CEEEEECCCHHHHH
Confidence 346678999999999987886 99995555 899999999999999999999884 78999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhch
Q 020528 85 LAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETT 164 (325)
Q Consensus 85 lA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~ 164 (325)
+|++|+++|++|+||||++++..+...++.+|++|+.+++ +++++.+.+++++++. +++..++++||.. ++|++|+
T Consensus 132 lA~~aa~~Gi~~~I~vP~~~~~~~~~~~~~~ga~vv~v~g--~~d~a~~~a~~~a~~~-g~~~~~~~~~p~~-ieG~~Ti 207 (398)
T TIGR03844 132 FAEVSAITGQPVILVVPKSSADRLWTTEPASSVLLVTVDG--DYTDAIALADRIATLP-GFVPEGGARNVAR-RDGMGTV 207 (398)
T ss_pred HHHHHHHcCCcEEEEECCChHHHHHHHhhCCcEEEEECCC--CHHHHHHHHHHHHHhC-CccccCCCCCHHH-HhhHHHH
Confidence 9999999999999999998654444445789999999985 6899999999998876 6654556677775 8999999
Q ss_pred HHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhC-------CCcEEEEEecCCCcccc----CCCCC-----------
Q 020528 165 GPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHN-------PEIKLYGVEPVESAVLS----GGKPG----------- 222 (325)
Q Consensus 165 ~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~-------~~~~vigV~~~~~~~~~----~~~~~----------- 222 (325)
++||++|++..||+||+|+|+|+++.|++.+++++. ..+|+++||+++++++. .+...
T Consensus 208 ~~Ei~eql~~~PD~VvvPvG~G~~~~~~~~~~~~l~~~g~i~~~~P~l~~VQ~eg~~p~~~a~~~g~~~~~~~~~~~~~~ 287 (398)
T TIGR03844 208 MLDAAVTIGSLPDHYFQAVGSGTGGIAAWEAAMRLIEDGRFGSKLPRLHLAQNLPFVPMVNAWQEGRREIIPESDMPDAE 287 (398)
T ss_pred HHHHHHHcCCCCCEEEEecCCCHHHHHHHHHHHHHHHcCCccCCCCCEEEEEcCCchHHHHHHHcCCCccccccCCcccc
Confidence 999999996459999999999999999999998853 33789999999998774 33221
Q ss_pred ----CcccccCCCCCCccc-------cccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCC-CC
Q 020528 223 ----PHKIQGIGAGFIPGV-------LDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE-NA 290 (325)
Q Consensus 223 ----~~~~~gl~~~~~~~~-------~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~-~~ 290 (325)
.+..++|..+..+.. ..++..++++.|+|+|+.+++++|++++|+++||+||+++|+++++.+.+. .+
T Consensus 288 ~~~~~t~a~~l~i~~p~~~~~~~~l~air~~~g~~v~Vsd~eI~~A~~~l~~~~gi~vEpa~A~alAal~k~~~~g~i~~ 367 (398)
T TIGR03844 288 NSIEEVYSDVLTNRTPPYGVTGGVFDALIATGGQMYGVSNKEAVSAGKLFEESEGIDILPAAAVAVAALVKAVESGFIGP 367 (398)
T ss_pred ccccceecceeeeCCCCcchHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhhCCccccccHHHHHHHHHHHHHhCCCCC
Confidence 123455544432322 224667899999999999999999999999999999999999999887765 47
Q ss_pred CCEEEEEeCCCCCCCcch
Q 020528 291 GKLIVVVFPSFGERYLSS 308 (325)
Q Consensus 291 ~~~vv~i~t~~g~~~~~~ 308 (325)
+++||+++|++|.|++..
T Consensus 368 ~~~Vv~vlTG~glK~~~~ 385 (398)
T TIGR03844 368 DDDILLNITGGGYKRLRE 385 (398)
T ss_pred CCeEEEEECCcchhhHHh
Confidence 889999999999997654
|
Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M. |
| >TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-52 Score=386.19 Aligned_cols=297 Identities=20% Similarity=0.222 Sum_probs=241.1
Q ss_pred chhHHHhhhhCCCCceecccccCCCC-ceEEEEeCCCCC-CCChhhHHHHHHHHHHHHh----------------CCCCC
Q 020528 7 VIAKDVTELIGKTPLVYLNRIVDGCV-ARIAAKLEMMEP-CSSVKDRIGYSMIADAEEK----------------GLIRP 68 (325)
Q Consensus 7 ~~~~~i~~~~~~TPL~~~~~l~~~~~-~~l~~K~E~~np-tGS~K~R~a~~~~~~a~~~----------------g~~~~ 68 (325)
..++++..+ .+|||++++.|++.+| .+||+|+|++|+ |||||+|++.+.+..+.++ +.+++
T Consensus 12 ~~~~~~~~~-~~TPL~~~~~l~~~~g~~~v~~K~E~~~~~tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (376)
T TIGR01747 12 AFHKKIPGY-RPTPLCALDHLANLLGLKKILVKDESKRFGLNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLKNDAIGE 90 (376)
T ss_pred HHHHhCCCC-CCCCCcchHHHHHHhCCCcEEEeeCCCCCCCCChHHHHHHHHHHHHHHHHhCCCcccCCHHHHhhhHHHh
Confidence 345566544 8899999999998888 589999999985 8999999999998877542 12111
Q ss_pred --CCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeE
Q 020528 69 --GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSY 146 (325)
Q Consensus 69 --g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~ 146 (325)
+..+||++|+||||+|+|++|+.+|++|+||||++++..|+.+++.+||+|+.+++ +++++.+.+++++++. +++
T Consensus 91 ~~~~~~vv~aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~~~~k~~~i~~~GAeVi~v~~--~~~~a~~~a~~~~~~~-g~~ 167 (376)
T TIGR01747 91 KMGQATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTITDM--NYDDTVRLAMQMAQQH-GWV 167 (376)
T ss_pred hcCCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CcE
Confidence 23689999999999999999999999999999999999999999999999999995 6899999999988876 688
Q ss_pred EeC-----CCCCCcc-hHhHHhchHHHHHhhhCC----CCCEEEEecCCchhHHHHHHHHHhhCC--CcEEEEEecCCCc
Q 020528 147 VLQ-----QFENPAN-PKIHYETTGPEIWKGTGG----KIDALVSGIGTGGTVTGAGKYLKEHNP--EIKLYGVEPVESA 214 (325)
Q Consensus 147 ~~~-----~~~n~~~-~~~g~~t~~~Ei~~ql~~----~~D~iv~pvG~Gg~~aGi~~~~k~~~~--~~~vigV~~~~~~ 214 (325)
+++ +|+|..+ .++||+|+++||++|+.. .||+||+|+|+||+++|++.++++..+ .++||+|||++++
T Consensus 168 ~~~~~~~~~~~~~~~~ii~G~~Tia~Ei~eQl~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~~~~p~vi~Vep~ga~ 247 (376)
T TIGR01747 168 VVQDTAWEGYEKIPTWIMQGYATLADEAVEQLREMGSVTPTHVLLQAGVGSMAGGVLGYFVDVYSENNPHSIVVEPDKAD 247 (376)
T ss_pred EeccccccccccCCchHHHHHHHHHHHHHHHhhccCCCCCCEEEECCchhHHHHHHHHHHHHhcCCCCCEEEEEeeCCCC
Confidence 876 4655222 278999999999999952 799999999999999999999987754 3799999999999
Q ss_pred cccC------CCC------CCcccccCCCCCC---ccccccccCCeEEEeCHHHHHHHHHHHHHHc----CCeeecchHH
Q 020528 215 VLSG------GKP------GPHKIQGIGAGFI---PGVLDVNLLDETVQISSEEAIETAKLLALKE----GLLVGISSGA 275 (325)
Q Consensus 215 ~~~~------~~~------~~~~~~gl~~~~~---~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~----gi~~~p~sg~ 275 (325)
++.. +++ ..+.+++|+.+.+ ++.+.++..+.++.|+|+|+.+++++|++.. ++++||++|+
T Consensus 248 ~~~~s~~~~~g~~~~~~~~~~Tiadgl~~~~~~~~~~~~~~~~~~~~v~V~D~ei~~A~~~L~~~~g~~~~i~~epaga~ 327 (376)
T TIGR01747 248 CLYQSAVKKDGDIVNVGGDMATIMAGLACGEPNPISWEILRNCTSQFISAQDSVAAKGMRVLGAPYGGDPRIISGESGAV 327 (376)
T ss_pred HHHHHHHhcCCCeEEcCCCccccccccccCCcchHHHHHHHhcCCEEEEcCHHHHHHHHHHHhcccCCCCeEeeeCchHH
Confidence 8741 332 1345577766542 4555667889999999999999999999965 5999999999
Q ss_pred HHHHHHHHH---------hcCC-CCCCEEEEEeCCCCCCCcch
Q 020528 276 ATAAAIQIA---------KRPE-NAGKLIVVVFPSFGERYLSS 308 (325)
Q Consensus 276 a~aa~~~~~---------~~~~-~~~~~vv~i~t~~g~~~~~~ 308 (325)
++|++.... +++. .++++||+|+ ++|+.+.+.
T Consensus 328 ~la~l~~~~~~~~~~~~~~~~~~~~~~~vvvi~-t~gn~d~~~ 369 (376)
T TIGR01747 328 GLGLLAAVMYHPQYQSLMEKLQLDKDAVVLVIS-TEGDTDPDH 369 (376)
T ss_pred HHHHHHHHHhCchHHHHHHHcCCCCCCEEEEEe-CCCCCCHHH
Confidence 998888432 2323 3478888888 567776664
|
This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase). |
| >PRK12391 tryptophan synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-50 Score=383.26 Aligned_cols=295 Identities=23% Similarity=0.266 Sum_probs=231.5
Q ss_pred hhhhCCCCceecccccCCCC--ceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEe-cCCChhHHHHHHHH
Q 020528 13 TELIGKTPLVYLNRIVDGCV--ARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIE-PTSGNTGIGLAFMA 89 (325)
Q Consensus 13 ~~~~~~TPL~~~~~l~~~~~--~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~-~ssGN~g~alA~~a 89 (325)
....++|||+++++|+..+| .+||+|+|++|||||||+|++..++..+.++|. +.+++ .|+||||.|+|++|
T Consensus 72 ~~~~~~TPL~~~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~a~~a~~~G~-----~~~vtetgsGN~G~alA~aa 146 (427)
T PRK12391 72 YRLWRPTPLIRARRLEKALGTPAKIYYKYEGVSPTGSHKPNTAVAQAYYNKKEGI-----KRLTTETGAGQWGSALALAC 146 (427)
T ss_pred HcccCCCCeeEchhhHhhhCCCceEEEEEcCCCCCCChHHHHHHHHHHHHHHCCC-----CEEEEccCchHHHHHHHHHH
Confidence 34567999999999987665 699999999999999999999999999999997 45565 67899999999999
Q ss_pred HHcCCeEEEEecCC---CCHHHHHHHHHcCCEEEEeCCCCC----------------hhHHHHHHHHHHHhCCCeEEeCC
Q 020528 90 AAKGYRLIITMPAS---MSLERRMVLLAFGAELVLTDPARG----------------MKGAVQKAEEIRDKTPNSYVLQQ 150 (325)
Q Consensus 90 ~~~g~~~~i~~p~~---~~~~~~~~~~~~Ga~v~~~~~~~~----------------~~~~~~~a~~~~~~~~~~~~~~~ 150 (325)
+.+|++|+||||+. .++.|+.+|+.+||+|+.++.+.+ ...++..+.+.+.+.++.+|+..
T Consensus 147 a~~Gl~~~V~mp~~s~~~k~~r~~~mr~~GA~Vi~~~~~~~~~~~~~~~~~~~~~gsl~~ai~~A~e~a~~~~~~~y~~~ 226 (427)
T PRK12391 147 ALFGLECTVFMVRVSYEQKPYRRSLMETYGAEVIPSPSDLTEAGRKILAEDPDHPGSLGIAISEAVEDAAKRPDTKYALG 226 (427)
T ss_pred HHcCCcEEEEEecCCcccCHHHHHHHHHCCCEEEEECCchhhhhhhhhhcCccccccHHHHHHHHHHHHHhCCCcEEEcC
Confidence 99999999999974 467889999999999999985311 11246677777766545455544
Q ss_pred CCCCcchHhHHhchHHHHHhhhC---CCCCEEEEecCCchhHHHHHHHHHh---hC-CCcEEEEEecCCCccccCCCC--
Q 020528 151 FENPANPKIHYETTGPEIWKGTG---GKIDALVSGIGTGGTVTGAGKYLKE---HN-PEIKLYGVEPVESAVLSGGKP-- 221 (325)
Q Consensus 151 ~~n~~~~~~g~~t~~~Ei~~ql~---~~~D~iv~pvG~Gg~~aGi~~~~k~---~~-~~~~vigV~~~~~~~~~~~~~-- 221 (325)
.+ ..+.+.||.++++||++|+. ..||+||+|+|+||+++|++.+|.. .+ +.+|||+|||++++++..+..
T Consensus 227 s~-~~~~~~~~~~ig~Ei~~Ql~~~g~~pD~Vv~~vG~Gg~~aGi~~~f~~~~~~g~~~~riiaVEp~~~~~l~~g~~~~ 305 (427)
T PRK12391 227 SV-LNHVLLHQTVIGLEAKKQLELAGEYPDVVIGCVGGGSNFAGLAFPFLGDKLEGKKDTRFIAVEPAACPTLTKGEYAY 305 (427)
T ss_pred CC-CcHHHhhHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHHHhcCCCCceEEEEeeccchhhccccccc
Confidence 32 33457899999999999995 3699999999999999999987733 34 889999999999998865421
Q ss_pred --------CC-cccccCCCCCCccccc-----------------cccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHH
Q 020528 222 --------GP-HKIQGIGAGFIPGVLD-----------------VNLLDETVQISSEEAIETAKLLALKEGLLVGISSGA 275 (325)
Q Consensus 222 --------~~-~~~~gl~~~~~~~~~~-----------------~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~ 275 (325)
.+ ....+++.+..|..+. ...+++.+.|+|+|+++++++|+++||++++|+||+
T Consensus 306 ~~gd~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~g~~~~~~~l~~~~~~~~~~V~d~e~~~a~~~~a~~eGi~~~pss~~ 385 (427)
T PRK12391 306 DFGDTAGLTPLLKMYTLGHDFVPPPIHAGGLRYHGMAPLVSLLVHEGLIEARAYPQTEVFEAAVLFARTEGIVPAPESSH 385 (427)
T ss_pred cccccccCCccceeEecCCCCCCccccccccccCCchHHHHHHHhcCceEEEEECHHHHHHHHHHHHHHcCCeechHHHH
Confidence 11 1234555544433321 223457899999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC--CCCCEEEEEeCCCCCCCcchhhhHHHH
Q 020528 276 ATAAAIQIAKRPE--NAGKLIVVVFPSFGERYLSSVLFESVK 315 (325)
Q Consensus 276 a~aa~~~~~~~~~--~~~~~vv~i~t~~g~~~~~~~~~~~~~ 315 (325)
+++++++++++.+ .++++||+++||+|+++ ...|+++.
T Consensus 386 alaaa~~~a~~~~~~~~~~~iv~~lsG~G~~d--~~~y~~~l 425 (427)
T PRK12391 386 AIAAAIDEALKAKEEGEEKVILFNLSGHGLLD--LAAYDAYL 425 (427)
T ss_pred HHHHHHHHHHhccccCCCCEEEEEeCCCCCCC--HHHHHHHh
Confidence 9999999887643 34678888887767655 44577765
|
|
| >PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-51 Score=399.07 Aligned_cols=295 Identities=21% Similarity=0.253 Sum_probs=233.5
Q ss_pred HHHhhhhC-CCCceecccccCC----CC--ceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhH
Q 020528 10 KDVTELIG-KTPLVYLNRIVDG----CV--ARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTG 82 (325)
Q Consensus 10 ~~i~~~~~-~TPL~~~~~l~~~----~~--~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g 82 (325)
..+..++| +|||+++++|++. +| .+||+|+|++|||||||||++..++..+++.|+ .+.|+++|+||||
T Consensus 317 ~~~~~~iGrpTPL~~~~~Ls~~l~~~~G~g~~IylK~E~lNpTGS~KdR~Al~~i~~A~~~G~----~~~IvetssGNhG 392 (695)
T PRK13802 317 TLNQRYVGRPSPLTEAPRFAERVKEKTGLDARVFLKREDLNHTGAHKINNALGQALLVKRMGK----TRVIAETGAGQHG 392 (695)
T ss_pred HHHHhcCCCCCceeEchhhhhhhHhhcCCCceEEEEEccCCCcCCcHHHHHHHHHHHHHHcCC----CCEEEEECcHHHH
Confidence 34467899 8999999998742 33 799999999999999999999999999999997 2578899999999
Q ss_pred HHHHHHHHHcCCeEEEEecCC---CCHHHHHHHHHcCCEEEEeCC-CCChhHHHHHH-HHHHHhCC-CeEEeCCCCCC--
Q 020528 83 IGLAFMAAAKGYRLIITMPAS---MSLERRMVLLAFGAELVLTDP-ARGMKGAVQKA-EEIRDKTP-NSYVLQQFENP-- 154 (325)
Q Consensus 83 ~alA~~a~~~g~~~~i~~p~~---~~~~~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a-~~~~~~~~-~~~~~~~~~n~-- 154 (325)
+|+|++|+++|++|+||||+. .+..|+.+|+.+||+|+.++. ..+++++.+.+ +++.++.+ .+|+++++.|+
T Consensus 393 ~AlA~aaA~~Gl~c~Ivmp~~~~~~~~~nv~~mr~lGAeVi~v~~g~~~l~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~P 472 (695)
T PRK13802 393 VATATVCAMLGLKCRIYMGQIDARRQALNVARMRMLGAEVVEVTLGDRILKDAINEALRDWVTNVKDTHYLLGTVAGPHP 472 (695)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHHHhcCCceEeecccCCCCC
Confidence 999999999999999999985 468899999999999999984 33677776655 44555433 45778888654
Q ss_pred --cchHhHHhchHHHHHhhhCC-----CCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccC---------
Q 020528 155 --ANPKIHYETTGPEIWKGTGG-----KIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSG--------- 218 (325)
Q Consensus 155 --~~~~~g~~t~~~Ei~~ql~~-----~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~--------- 218 (325)
.++.+||+++|.||++|+.. .||+||+|+|+||+++|++++|++ .|.+|+|||||.++.....
T Consensus 473 ~p~~v~agq~tiG~EI~eQ~~~~~g~~~pD~VVa~VGgGg~~~Gi~~~f~~-~~~vkligVE~~g~g~~~g~h~~~~~~g 551 (695)
T PRK13802 473 FPAMVRDFQKIIGEEAKQQLQDWYGIDHPDAICACVGGGSNAIGVMNAFLD-DERVNLYGYEAGGNGPESGKHAIRFAPG 551 (695)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEEcCCchHHHHHHHHHHHh-CCCceEEEEEecCCCccccchhhhhhhc
Confidence 23568999999999999952 699999999999999999999976 6899999999999743221
Q ss_pred -CCCC--------------------CcccccCCCCCC-ccccccccCCeE--EEeCHHHHHHHHHHHHHHcCCeeecchH
Q 020528 219 -GKPG--------------------PHKIQGIGAGFI-PGVLDVNLLDET--VQISSEEAIETAKLLALKEGLLVGISSG 274 (325)
Q Consensus 219 -~~~~--------------------~~~~~gl~~~~~-~~~~~~~~~d~~--~~v~d~e~~~a~~~l~~~~gi~~~p~sg 274 (325)
+.++ .....||.-+-+ |..-..+.++++ +.|+|+|++++++.|+++|||+++|+||
T Consensus 552 ~g~~g~~~g~~~~~~~~~~g~~~~~~sis~gLdy~gvgp~~~~l~~~~rv~~~~vtD~eal~a~~~La~~EGIipa~eS~ 631 (695)
T PRK13802 552 TGELGMFQGAKSYLLENDEGQTLDTYSISAGLDYASVGPEHAWLKDIGRVNYSWATDEEAMNAFKDLCETEGIIPAIESS 631 (695)
T ss_pred cCCccccccceeecccCCCCCccCccccccccCCCCCCchhHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCccccchHH
Confidence 1100 000011110001 111112234555 8999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCC---CCCEEEEEeCCCCCCCcchh
Q 020528 275 AATAAAIQIAKRPEN---AGKLIVVVFPSFGERYLSSV 309 (325)
Q Consensus 275 ~a~aa~~~~~~~~~~---~~~~vv~i~t~~g~~~~~~~ 309 (325)
+|++++++++++... ++++||+++||+|+||++++
T Consensus 632 hAva~a~~~a~~~~~~~~~~~~Vv~~lsg~GdKdl~~~ 669 (695)
T PRK13802 632 HAVAGAYKAAADLKAKGYEHPVMIVNISGRGDKDMNTA 669 (695)
T ss_pred HHHHHHHHHHHhcccccCCCCEEEEEECCCCcCCHHHH
Confidence 999999999875431 25699999999999999984
|
|
| >TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-51 Score=381.50 Aligned_cols=290 Identities=20% Similarity=0.196 Sum_probs=231.9
Q ss_pred hhCCCCceecccccCCCC-ceEEEEeCCCCC-CCChhhHHHHHHHHHHH--HhCCC--------------C--CCCeEEE
Q 020528 15 LIGKTPLVYLNRIVDGCV-ARIAAKLEMMEP-CSSVKDRIGYSMIADAE--EKGLI--------------R--PGESVLI 74 (325)
Q Consensus 15 ~~~~TPL~~~~~l~~~~~-~~l~~K~E~~np-tGS~K~R~a~~~~~~a~--~~g~~--------------~--~g~~~vv 74 (325)
...+|||++++.|+..+| .+||+|+|++|+ |||||+||+.+.+..+. +.|.. . ....+||
T Consensus 38 ~~~~TPL~~~~~L~~~~g~~~v~lK~E~~q~~tGSFK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~vv 117 (396)
T TIGR03528 38 GYQPTPLAELDNLAKHLGVGSILVKDESYRFGLNAFKVLGGSYAIGKYLAEKLGKDISELSFEKLKSNEIREKLGDITFV 117 (396)
T ss_pred CCcCCCCcchHHHHHHhCCCcEEEeeCCCCCCcCChHHHHHHHHHHHHHHHHhCCCcccccHHHhhhHHHHhhccCcEEE
Confidence 457899999999998788 699999999985 99999999999998753 23310 0 0123799
Q ss_pred ecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeC-----
Q 020528 75 EPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQ----- 149 (325)
Q Consensus 75 ~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----- 149 (325)
++|+||||+|+|++|+.+|++|+||||++++..|+.+++.+||+|+.++. +++++.+.+++++++. ++++++
T Consensus 118 ~aSsGN~g~alA~~aa~~Gi~~~IvvP~~~~~~K~~~ir~~GAeVi~~~~--~~~~a~~~a~~~a~~~-g~~~v~~~~~~ 194 (396)
T TIGR03528 118 TATDGNHGRGVAWAANQLGQKSVVYMPKGSAQIRLENIRAEGAECTITDL--NYDDAVRLAWKMAQEN-GWVMVQDTAWE 194 (396)
T ss_pred EECccHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CcEeecccccc
Confidence 99999999999999999999999999999999999999999999999985 6889999999998876 788875
Q ss_pred CCCCCc-chHhHHhchHHHHHhhhC----CCCCEEEEecCCchhHHHHHHHHHhh-CCC-cEEEEEecCCCccccC----
Q 020528 150 QFENPA-NPKIHYETTGPEIWKGTG----GKIDALVSGIGTGGTVTGAGKYLKEH-NPE-IKLYGVEPVESAVLSG---- 218 (325)
Q Consensus 150 ~~~n~~-~~~~g~~t~~~Ei~~ql~----~~~D~iv~pvG~Gg~~aGi~~~~k~~-~~~-~~vigV~~~~~~~~~~---- 218 (325)
+|+|.. ..++||+|+++||++|+. +.||+||+|+|+||+++|++.++++. .+. +|||+|||++++++..
T Consensus 195 ~~~~~~~~~i~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~Vep~~a~~l~~s~~~ 274 (396)
T TIGR03528 195 GYEKIPTWIMQGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPITVIVEPDAADCLYRSAIA 274 (396)
T ss_pred ccccCchHHHHHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEEEEEccCCCchHHHHHHh
Confidence 566532 236899999999999995 26999999999999999999999654 344 5999999999987742
Q ss_pred --CCC------CCcccccCCCCC---CccccccccCCeEEEeCHHHHHHHHHHHHH----HcCCeeecchHHHHHHHHHH
Q 020528 219 --GKP------GPHKIQGIGAGF---IPGVLDVNLLDETVQISSEEAIETAKLLAL----KEGLLVGISSGAATAAAIQI 283 (325)
Q Consensus 219 --~~~------~~~~~~gl~~~~---~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~----~~gi~~~p~sg~a~aa~~~~ 283 (325)
+.+ ..+..++++.+. .++.+.++++|+++.|+|+|+.++++++++ ++++++||++|+++|++..+
T Consensus 275 ~~g~~~~~~g~~~Tiadgl~~~~p~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~~~~~epsga~~~Aalaa~ 354 (396)
T TIGR03528 275 DDGKPHFVTGDMATIMAGLACGEPNTIGWEILRDYASQFISCPDWVAAKGMRILGNPLKGDPRVISGESGAVGTGLLAAV 354 (396)
T ss_pred cCCCEEEeCCCccceecccccCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHhcccCCCCceeecCcHHHHHHHHHHH
Confidence 221 123456665432 233445678999999999999999999998 67999999999999665332
Q ss_pred H---------hcCC-CCCCEEEEEeCCCCCCCcch
Q 020528 284 A---------KRPE-NAGKLIVVVFPSFGERYLSS 308 (325)
Q Consensus 284 ~---------~~~~-~~~~~vv~i~t~~g~~~~~~ 308 (325)
. +++. .++++||+|+| ||+.+.+.
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~vv~i~t-ggn~d~~~ 388 (396)
T TIGR03528 355 MTNPDYKELREKLQLDKNSRVLLIST-EGDTDPDN 388 (396)
T ss_pred HhCchhHHHHHhcCCCCCCEEEEEEC-CCCCCHHH
Confidence 2 2222 35789999995 57766654
|
Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate. |
| >cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-51 Score=373.60 Aligned_cols=277 Identities=21% Similarity=0.230 Sum_probs=223.9
Q ss_pred CCceecccccCCC--CceEEEEeCCCCCC---CChhhHHHHHHHHHHHHhCCCCCCCeEEEec--CCChhHHHHHHHHHH
Q 020528 19 TPLVYLNRIVDGC--VARIAAKLEMMEPC---SSVKDRIGYSMIADAEEKGLIRPGESVLIEP--TSGNTGIGLAFMAAA 91 (325)
Q Consensus 19 TPL~~~~~l~~~~--~~~l~~K~E~~npt---GS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~--ssGN~g~alA~~a~~ 91 (325)
|||+++++|+..+ +.+||+|+|++||+ ||||||++.+++..++++|. +.||++ |+||||+|+|++|+.
T Consensus 1 TPl~~~~~l~~~~g~~~~l~~K~E~~np~gsfgs~K~R~~~~~l~~a~~~g~-----~~vv~~ggs~GN~g~alA~~a~~ 75 (307)
T cd06449 1 TPIQYLPRLSEHLGGKVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDALAKGA-----DTLVTVGGIQSNHTRQVAAVAAK 75 (307)
T ss_pred CcccchhHHHHhhCCCCcEEEecccccCCCCccchHHHHHHHHHHHHHHcCC-----CEEEECCCchhHHHHHHHHHHHH
Confidence 8999999998766 57899999999998 56699999999999999887 678888 579999999999999
Q ss_pred cCCeEEEEecCCCC--------HHHHHHHHHcCCEEEEeCCCCC--hhHHHHHHHHHHHhC-CCeEE-eCCCC-CCcchH
Q 020528 92 KGYRLIITMPASMS--------LERRMVLLAFGAELVLTDPARG--MKGAVQKAEEIRDKT-PNSYV-LQQFE-NPANPK 158 (325)
Q Consensus 92 ~g~~~~i~~p~~~~--------~~~~~~~~~~Ga~v~~~~~~~~--~~~~~~~a~~~~~~~-~~~~~-~~~~~-n~~~~~ 158 (325)
+|++|+||||++.+ ..|+.+++.+||+|+.++.+.+ ...+...+.+..++. +..|+ .+++. |+.+ .
T Consensus 76 ~G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 154 (307)
T cd06449 76 LGLKCVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAGFDIGIRKSFEEAAEEVEAKGGKPYVIPAGGSEHPLG-G 154 (307)
T ss_pred cCCeEEEEecCCCCcccccccccccHHHHHHCCCEEEEECCcchhhHHHHHHHHHHHHHHcCCceEEecCCCCCCccc-H
Confidence 99999999999876 4689999999999999986421 122333333333333 22344 45553 8887 6
Q ss_pred hHHhchHHHHHhhhCC---CCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCC---CcccccCC--
Q 020528 159 IHYETTGPEIWKGTGG---KIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPG---PHKIQGIG-- 230 (325)
Q Consensus 159 ~g~~t~~~Ei~~ql~~---~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~~---~~~~~gl~-- 230 (325)
.||.++++||++|+.+ .||+||+|+|+||+++|++++||+.+|.+|||+|+|.+++.+...... ...+.+++
T Consensus 155 ~G~~t~~~Ei~~q~~~~~~~~d~vv~~~GtGgt~~G~~~~~~~~~~~~~ii~V~~~~~~~~~~~~~~~~~~~~~~~~g~~ 234 (307)
T cd06449 155 LGYVGFVLEIAQQEEELGFKFDSIVVCSVTGSTHAGLSVGLAALGRQRRVIGIDASAKPEKTKAQVLRIAQAKLAEEGLE 234 (307)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhcCCCCeEEEEEecCchHHHHHHHHHHHHHHHHHcCCC
Confidence 7999999999999854 699999999999999999999999999999999999998765321100 01222222
Q ss_pred CCCCccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeec-chHHHHHHHHHHHhcCC-CCCCEEEEEeCCC
Q 020528 231 AGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGI-SSGAATAAAIQIAKRPE-NAGKLIVVVFPSF 301 (325)
Q Consensus 231 ~~~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p-~sg~a~aa~~~~~~~~~-~~~~~vv~i~t~~ 301 (325)
....+..+..+++|+.+.|+|+|++++++++++++|+++|| +||++++++.++++++. .++++||+|+|+|
T Consensus 235 ~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~~Gi~~ep~ytg~~~aa~~~~~~~~~~~~~~~vv~i~TGG 307 (307)
T cd06449 235 VKEEDVVLDDDYAAPEYGIPNDETIEAIKLCARLEGIITDPVYEGKSMQGMIDLVRNGEFKEGSKVLFIHLGG 307 (307)
T ss_pred CCcccEEEecCcccCCCCCCCHHHHHHHHHHHHHhCCccccchHHHHHHHHHHHHhcCCCCCCCeEEEEeCCC
Confidence 22345566778899999999999999999999999999999 79999999999988754 4578999999875
|
|
| >TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-51 Score=374.93 Aligned_cols=281 Identities=21% Similarity=0.150 Sum_probs=225.0
Q ss_pred hhCCCCceecccccCCCCceEEEEeCCCCCC--CChhhHHHHHHHHHHHHhCCCCCCCeEEEec--CCChhHHHHHHHHH
Q 020528 15 LIGKTPLVYLNRIVDGCVARIAAKLEMMEPC--SSVKDRIGYSMIADAEEKGLIRPGESVLIEP--TSGNTGIGLAFMAA 90 (325)
Q Consensus 15 ~~~~TPL~~~~~l~~~~~~~l~~K~E~~npt--GS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~--ssGN~g~alA~~a~ 90 (325)
...+|||+++++|+...+.+||+|+|++||| ||||||++.+++..++++|. +.||++ |+||||+|+|++|+
T Consensus 4 ~~~~TPl~~~~~l~~~~g~~l~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~g~-----~~vv~~g~ssGN~g~alA~~a~ 78 (311)
T TIGR01275 4 IPWPTPIQYLPRISREIGAEIYIKRDDLTGLGIGGNKIRKLEYLLADALSKGA-----DTVITVGAIQSNHARATALAAK 78 (311)
T ss_pred CCCCCcceechhhhhhcCCeEEEEeccCcCCCCCchhHHHHHHHHHHHHHcCC-----CEEEEcCCchhHHHHHHHHHHH
Confidence 3578999999999877778999999999998 99999999999999999987 678888 55999999999999
Q ss_pred HcCCeEEEEecCCC-CHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHH----hCC-CeEEeCCCCCCcchHhHHhch
Q 020528 91 AKGYRLIITMPASM-SLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRD----KTP-NSYVLQQFENPANPKIHYETT 164 (325)
Q Consensus 91 ~~g~~~~i~~p~~~-~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~----~~~-~~~~~~~~~n~~~~~~g~~t~ 164 (325)
.+|++|+||||+.. +..+..+++.+||+|+.++.. ++++..+.++++++ +.+ .+++.+++.|+.+ ..|+.++
T Consensus 79 ~~G~~~~ivvp~~~~~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~g~~~~ 156 (311)
T TIGR01275 79 KLGLDAVLVLREKEELNGNLLLDKLMGAETRVYSAE-EYFEIMKYAEELAEELEKEGRKPYVIPVGGSNSLG-TLGYVEA 156 (311)
T ss_pred HhCCceEEEecCCccCCCCHHHHHHcCCEEEEECch-hhhhhHHHHHHHHHHHHhcCCCeEEECCCCCcHHH-HHHHHHH
Confidence 99999999999975 456677889999999999852 34444455544443 221 2445577788877 4666779
Q ss_pred HHHHHhhhCC--CCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCC---CCCcccccCCCC-CCcccc
Q 020528 165 GPEIWKGTGG--KIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGK---PGPHKIQGIGAG-FIPGVL 238 (325)
Q Consensus 165 ~~Ei~~ql~~--~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~---~~~~~~~gl~~~-~~~~~~ 238 (325)
++||++|+++ .||+||+|+|+|||++|++++||+.+|+++||||+++.+....... ...+.+++++.+ .....+
T Consensus 157 ~~EI~~q~~~~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 236 (311)
T TIGR01275 157 VLEIATQLESEVKFDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGVAVGRFGEDMTDKFVNLVKEIAEGLEVKASEVIPE 236 (311)
T ss_pred HHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEEEecccHHHHHHHHHHHHHHHHHHhCCCCCCCEEE
Confidence 9999999953 7999999999999999999999999999999999987653211000 012234455443 223334
Q ss_pred ccccCCeEEEeCHHHHHHHHHHHHHHcCCeeec-chHHHHHHHHHHHhcCCCCCCEEEEEeCCCC
Q 020528 239 DVNLLDETVQISSEEAIETAKLLALKEGLLVGI-SSGAATAAAIQIAKRPENAGKLIVVVFPSFG 302 (325)
Q Consensus 239 ~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p-~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g 302 (325)
..++.+..+.|+|+|++++++++++++|+++|| +||++++++++++++...++++||+|+|+|.
T Consensus 237 ~~~~~~~~~~v~d~e~~~~~~~la~~~gi~vep~~sg~~~aa~~~~~~~~~~~~~~vv~i~tGG~ 301 (311)
T TIGR01275 237 LDDYSGPGYGKPTSEVAEIVKKVASREGIILDPVYTGKAFYGLIDLIRKGELGEKGILFIHTGGI 301 (311)
T ss_pred ECCcccCcCCCCCHHHHHHHHHHHHHhCCccCcchHHHHHHHHHHHHHhCCCCCCCEEEEECCCc
Confidence 456778899999999999999999999999999 6999999999987765445778999998763
|
This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7). |
| >PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-51 Score=377.09 Aligned_cols=288 Identities=17% Similarity=0.169 Sum_probs=232.1
Q ss_pred hHHHhhhhCCCCceecccccCCCC--ceEEEEeCCCCCC---CChhhHHHHHHHHHHHHhCCCCCCCeEEEec--CCChh
Q 020528 9 AKDVTELIGKTPLVYLNRIVDGCV--ARIAAKLEMMEPC---SSVKDRIGYSMIADAEEKGLIRPGESVLIEP--TSGNT 81 (325)
Q Consensus 9 ~~~i~~~~~~TPL~~~~~l~~~~~--~~l~~K~E~~npt---GS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~--ssGN~ 81 (325)
+.++.+.+++|||+++++++...| .+||+|+|++||+ ||||||.+.+++.++.++|. .+|+++ |+|||
T Consensus 6 ~~~~~l~~g~TPL~~~~~l~~~~g~~~~v~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~-----~~vvs~G~s~GN~ 80 (337)
T PRK12390 6 FPRYPLTFGPTPIHPLKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGA-----DTLVSIGGVQSNH 80 (337)
T ss_pred CCccccCCCCCcceeHHHHHHHhCCCCeEEEEeCCCCCCCCccchhHHHHHHHHHHHHHcCC-----CEEEEeCCCccHH
Confidence 447778899999999999887666 6899999999987 78899999999999999997 667877 77999
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCC--------HHHHHHHHHcCCEEEEeCCCC--ChhHHHHHHHHHHHhCCCeEE-eCC
Q 020528 82 GIGLAFMAAAKGYRLIITMPASMS--------LERRMVLLAFGAELVLTDPAR--GMKGAVQKAEEIRDKTPNSYV-LQQ 150 (325)
Q Consensus 82 g~alA~~a~~~g~~~~i~~p~~~~--------~~~~~~~~~~Ga~v~~~~~~~--~~~~~~~~a~~~~~~~~~~~~-~~~ 150 (325)
|+|+|++|+++|++|+||++..++ ..|+.+++.+||+|+.++... .++++.+.+.+..++..+..| +++
T Consensus 81 g~alA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (337)
T PRK12390 81 TRQVAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPDGFDIGIRKSWEDALEDVRAAGGKPYAIPA 160 (337)
T ss_pred HHHHHHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeCCCcchhHHHHHHHHHHHHHhCCCceEEeCC
Confidence 999999999999999999876544 337779999999999998631 234666677777666434334 554
Q ss_pred CCCC-cchHhHHhchHHHHHhh---hCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCC---CCC
Q 020528 151 FENP-ANPKIHYETTGPEIWKG---TGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGK---PGP 223 (325)
Q Consensus 151 ~~n~-~~~~~g~~t~~~Ei~~q---l~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~---~~~ 223 (325)
+.+. .....|+.++++||++| ++++||+||+|+|+||+++|++++||+..|++|||+|+++++..+...+ ...
T Consensus 161 ~~~~~~~~~~G~~~~a~Ei~~q~~~~~~~~d~vvv~vGtGgtlaGi~~~~k~~~~~~rvigV~~~~~~~~~~~~~~~~~~ 240 (337)
T PRK12390 161 GASDHPLGGLGFVGFAEEVRAQEAELGFKFDYIVVCSVTGSTQAGMVVGFAADGRARRVIGIDASAKPEQTRAQVLRIAR 240 (337)
T ss_pred cCCCCCcccHHHHHHHHHHHHHHHhcCCCCCEEEEecCcchhHHHHHHHHHhcCCCceEEEEEecCchHHHHHHHHHHHH
Confidence 4332 12246788889999998 4457999999999999999999999999999999999999987664321 112
Q ss_pred cccccCCCCC--Ccc--ccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecc-hHHHHHHHHHHHhcCC-CCCCEEEEE
Q 020528 224 HKIQGIGAGF--IPG--VLDVNLLDETVQISSEEAIETAKLLALKEGLLVGIS-SGAATAAAIQIAKRPE-NAGKLIVVV 297 (325)
Q Consensus 224 ~~~~gl~~~~--~~~--~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~-sg~a~aa~~~~~~~~~-~~~~~vv~i 297 (325)
+.+++++.+. .+. .+..+++|+.+.|+|+|++++++++++++|+++||+ ||+++++++++.+++. .++++||++
T Consensus 241 ~~a~~~g~~~~~~~~~~~~~~~~~~~~~~vsd~e~~~a~~~la~~~gi~~ep~ysg~~~aa~~~~~~~g~~~~~~~vv~~ 320 (337)
T PRK12390 241 NTAELVELGRDITEDDVVLDERYAGPEYGLPNEGTLEAIRLCARLEGMLTDPVYEGKSMHGMIDLVRKGEFPEGSKVLYA 320 (337)
T ss_pred HHHHHhCCCCCCChhhEEEecccccCCCCCCCHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCCCCCCeEEEE
Confidence 3334444332 222 345678899999999999999999999999999995 9999999999998775 467899999
Q ss_pred eCCC
Q 020528 298 FPSF 301 (325)
Q Consensus 298 ~t~~ 301 (325)
||||
T Consensus 321 htgg 324 (337)
T PRK12390 321 HLGG 324 (337)
T ss_pred eCCC
Confidence 9876
|
|
| >PRK03910 D-cysteine desulfhydrase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-51 Score=375.94 Aligned_cols=288 Identities=23% Similarity=0.252 Sum_probs=231.7
Q ss_pred hHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCC--CChhhHHHHHHHHHHHHhCCCCCCCeEEEecC--CChhHHH
Q 020528 9 AKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPC--SSVKDRIGYSMIADAEEKGLIRPGESVLIEPT--SGNTGIG 84 (325)
Q Consensus 9 ~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~npt--GS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s--sGN~g~a 84 (325)
..++...+++|||++++.|++..|.+||+|+|++||+ ||||||++.+++.++.++|. ++||++| +||||+|
T Consensus 6 ~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~lnp~g~gs~K~R~~~~~l~~a~~~g~-----~~vvt~g~s~gN~g~a 80 (331)
T PRK03910 6 FPRLELAGLPTPLEPLPRLSAALGPDIYIKRDDLTGLALGGNKTRKLEFLLADALAQGA-----DTLITAGAIQSNHARQ 80 (331)
T ss_pred CCCccccCCCCCceEhhhhhHhhCCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHcCC-----CEEEEcCcchhHHHHH
Confidence 3457788999999999999877778999999999996 59999999999999998886 5688775 4899999
Q ss_pred HHHHHHHcCCeEEEEecCCCCH--------HHHHHHHHcCCEEEEeCCCCChhH-HHHHHHHHHHhCCCeE-EeCCCCCC
Q 020528 85 LAFMAAAKGYRLIITMPASMSL--------ERRMVLLAFGAELVLTDPARGMKG-AVQKAEEIRDKTPNSY-VLQQFENP 154 (325)
Q Consensus 85 lA~~a~~~g~~~~i~~p~~~~~--------~~~~~~~~~Ga~v~~~~~~~~~~~-~~~~a~~~~~~~~~~~-~~~~~~n~ 154 (325)
+|++|+.+|++|+||||+..+. .++.+++.+||+|+.++..++..+ +...++++.++.+..| +..++.|+
T Consensus 81 lA~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~ 160 (331)
T PRK03910 81 TAAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAGTDMDAQLEELAEELRAQGRRPYVIPVGGSNA 160 (331)
T ss_pred HHHHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCccchHHHHHHHHHHHHHHcCCceEEECCCCCCc
Confidence 9999999999999999998765 456899999999999986433323 3445566655543333 44667788
Q ss_pred cchHhHHhchHHHHHhhhCC---CCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCC---CCccccc
Q 020528 155 ANPKIHYETTGPEIWKGTGG---KIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKP---GPHKIQG 228 (325)
Q Consensus 155 ~~~~~g~~t~~~Ei~~ql~~---~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~---~~~~~~g 228 (325)
.+ ..|+.+++.||++|+.+ .||+||+|+|+||+++|++++||+.+|+++||+|||++++.+....+ ..+..++
T Consensus 161 ~~-~~g~~~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~~a~~ 239 (331)
T PRK03910 161 LG-ALGYVACALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGVTVSRSAAEQEPKVAKLAQATAEL 239 (331)
T ss_pred hh-HHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 87 56888999999999953 69999999999999999999999999999999999998865532111 0122234
Q ss_pred CCCC--CC--ccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecc-hHHHHHHHHHHHhcCCC-CCCEEEEEeCCCC
Q 020528 229 IGAG--FI--PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGIS-SGAATAAAIQIAKRPEN-AGKLIVVVFPSFG 302 (325)
Q Consensus 229 l~~~--~~--~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~-sg~a~aa~~~~~~~~~~-~~~~vv~i~t~~g 302 (325)
++.+ .. ...+..+++|+.+.|+|+|++++++++++++|+++||+ ||+++++++++.++... ++++||+|+|+ |
T Consensus 240 ~g~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~ep~ysg~~~aa~~~~~~~~~~~~~~~Vv~i~tG-G 318 (331)
T PRK03910 240 LGLPTEIPRADIRLWDDYVGPGYGVPTDEMLEAVKLLARTEGILLDPVYTGKAMAGLIDLIRQGRFKKGGNVLFIHTG-G 318 (331)
T ss_pred cCCCccCCcccEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHcCCCCCCCeEEEEECC-C
Confidence 4332 11 22355678899999999999999999999999999995 99999999998876543 57899999965 5
Q ss_pred C
Q 020528 303 E 303 (325)
Q Consensus 303 ~ 303 (325)
+
T Consensus 319 ~ 319 (331)
T PRK03910 319 A 319 (331)
T ss_pred h
Confidence 4
|
|
| >PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-50 Score=369.58 Aligned_cols=277 Identities=39% Similarity=0.560 Sum_probs=226.7
Q ss_pred HhhhhCCCCceecc--cccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHH
Q 020528 12 VTELIGKTPLVYLN--RIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMA 89 (325)
Q Consensus 12 i~~~~~~TPL~~~~--~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a 89 (325)
|++++++|||++++ .++...+.+||+|+|++|||||||||++.+++.+++++|. ++|+++|+||||.|+|++|
T Consensus 1 i~~~~~~TPl~~~~~~~~~~~~~~~i~~K~E~~~ptgs~K~R~a~~~l~~a~~~~~-----~~vv~assGN~g~a~A~~a 75 (306)
T PF00291_consen 1 ISLGIGPTPLVRLPSRLLSELGGANIYLKREDLNPTGSFKDRGAYYLLSRAKEKGG-----RTVVGASSGNHGRALAYAA 75 (306)
T ss_dssp GGGGSSSS-EEEEHEHHHHHCTTSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTT-----SEEEEESSSHHHHHHHHHH
T ss_pred CcCCCcCCCEEECccccchhccCCeEEEEECCCCCcCCcccccchhhhhhcccccc-----ceeeeeccCCceehhhhhh
Confidence 57889999999975 4445567899999999999999999999999999998875 6789999999999999999
Q ss_pred HHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHh-------CCCeEEeCCCCCCcchHhHHh
Q 020528 90 AAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDK-------TPNSYVLQQFENPANPKIHYE 162 (325)
Q Consensus 90 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~-------~~~~~~~~~~~n~~~~~~g~~ 162 (325)
+.+|++|++|+|++++..|+++++.+|++|+.++. +++++.+.+.+++++ .++. ++|+ |+.+.+.||.
T Consensus 76 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~g~~ 150 (306)
T PF00291_consen 76 ARLGLKCTIVVPEDVSPEKLKQMRALGAEVILVPG--DVEGAFDDAQELAKERAELLSPFNGE--LNQY-NNPNVIAGYA 150 (306)
T ss_dssp HHHTCEEEEEEETTSHHHHHHHHHHTTCEEEEESS--THHHHHHHHHHHHHHHHHHHHHSTTE--ESTT-TSHHHHHHHH
T ss_pred hhccccceeeeccccccccccceeeecceEEEccc--cccccccccccccccccccccccccc--cCcc-cchhhhhhhh
Confidence 99999999999999999999999999999999985 344444444443332 1122 6777 5555689999
Q ss_pred chHHHHHhhhCCCCCE--EEEecCCchhHHHHHHHHHh--hCCCcEEEEEecCCCcccc----CCCC----CCcccccCC
Q 020528 163 TTGPEIWKGTGGKIDA--LVSGIGTGGTVTGAGKYLKE--HNPEIKLYGVEPVESAVLS----GGKP----GPHKIQGIG 230 (325)
Q Consensus 163 t~~~Ei~~ql~~~~D~--iv~pvG~Gg~~aGi~~~~k~--~~~~~~vigV~~~~~~~~~----~~~~----~~~~~~gl~ 230 (325)
+++.||++|+. .||+ ||+|+|+||+++|++.+++. . |.+|+|+|++.+++++. .+.+ ..+.+++++
T Consensus 151 ~~~~Ei~~q~~-~~d~d~vvv~~GtGg~~~Gi~~~~~~~~~-~~~~vigv~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~ 228 (306)
T PF00291_consen 151 TIGLEIYEQLG-KPDPDYVVVPVGTGGTAAGIAAGLKELIL-PPVRVIGVEPEGSDPLYRSFKAGKPIRLPGESTIAGLG 228 (306)
T ss_dssp HHHHHHHHHHT-TESESEEEEEESSSHHHHHHHHHHHHHCH-TTSEEEEEEETTGHHHHHHHHHTSCEHSSCHHSSTGGT
T ss_pred hcchhcccccc-cccceEEEecCCchhHHHHHHhhhhhhhc-ccccceeeeccCCccccccccccccccccceeeeeccc
Confidence 99999999996 7766 99999999999999999999 7 99999999999997764 2332 124556777
Q ss_pred CCC-Cccc----cccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCC---CCCCEEEEEeCC
Q 020528 231 AGF-IPGV----LDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE---NAGKLIVVVFPS 300 (325)
Q Consensus 231 ~~~-~~~~----~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~---~~~~~vv~i~t~ 300 (325)
.+. .+.. +..++.++++.|+|+|+.++++++++++|+++||++|+++++++++.++.. .++++||+|+||
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~~a~a~aa~~~~~~~~~~~~~~~~~vv~v~tG 306 (306)
T PF00291_consen 229 VPMPFPGELDLELIDEYVGDVVGVSDEEALEAIRELAEREGILVEPSSAAALAAALKLAERGSLAPPAGKRVVVVLTG 306 (306)
T ss_dssp SSSCTTTTHHHHHHHHETEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHHHHHHHHTGCHTTTTSEEEEEE-B
T ss_pred CCccchhhhhhhhhhhccccccccchHHHHHHHHHHHHHcCcEEcHHHHHHHHHHHHHHHhCCccccCCCeEEEEcCC
Confidence 655 2222 334566778999999999999999999999999999999999999887763 378999999975
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D .... |
| >TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-50 Score=370.88 Aligned_cols=287 Identities=19% Similarity=0.198 Sum_probs=232.7
Q ss_pred hHHHhhhhCCCCceecccccCCCC--ceEEEEeCCCCCC---CChhhHHHHHHHHHHHHhCCCCCCCeEEEec--CCChh
Q 020528 9 AKDVTELIGKTPLVYLNRIVDGCV--ARIAAKLEMMEPC---SSVKDRIGYSMIADAEEKGLIRPGESVLIEP--TSGNT 81 (325)
Q Consensus 9 ~~~i~~~~~~TPL~~~~~l~~~~~--~~l~~K~E~~npt---GS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~--ssGN~ 81 (325)
..++.+.+|+|||+++++|++.+| .+||+|+|++||+ ||||||.+.+++.+++++|+ +.|+++ |+|||
T Consensus 5 ~~~~~l~~g~TPl~~~~~l~~~~g~~~~l~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~-----~~vvs~ggs~gN~ 79 (337)
T TIGR01274 5 FPRYPLTFGPSPIHPLPRLSQHLGGKVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQAQGC-----TTLVSIGGIQSNQ 79 (337)
T ss_pred CCccccCCCCCCceEhHhhHHhcCCCceEEEEccCCcCCcCccchHHHHHHHHHHHHHHcCC-----CEEEECCCCcchH
Confidence 456778899999999999987765 4999999999986 77799999999999999997 677876 66999
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCC--------HHHHHHHHHcCCEEEEeCCCC--ChhHHHHHHHHHHHhCC-CeEEeCC
Q 020528 82 GIGLAFMAAAKGYRLIITMPASMS--------LERRMVLLAFGAELVLTDPAR--GMKGAVQKAEEIRDKTP-NSYVLQQ 150 (325)
Q Consensus 82 g~alA~~a~~~g~~~~i~~p~~~~--------~~~~~~~~~~Ga~v~~~~~~~--~~~~~~~~a~~~~~~~~-~~~~~~~ 150 (325)
|+|+|++|+++|++|+||+|+..+ ..|+.+++.+||+|+.++... ...++...+.+.+++.+ ..|+++.
T Consensus 80 g~alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~i~~ 159 (337)
T TIGR01274 80 TRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDGFDIGHRNSWERALEEVRGAGGKPYPIPA 159 (337)
T ss_pred HHHHHHHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEeCCcccccchHHHHHHHHHHHhcCCceEEeCC
Confidence 999999999999999999998542 589999999999999998632 12356656666655552 3366665
Q ss_pred CCC--CcchHhHHhchHHHHHhhh---CCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCC---CC
Q 020528 151 FEN--PANPKIHYETTGPEIWKGT---GGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGK---PG 222 (325)
Q Consensus 151 ~~n--~~~~~~g~~t~~~Ei~~ql---~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~---~~ 222 (325)
+.+ +.. ..|+.++++||++|+ +..||+||+|+|+||+++|+++++++..+++|||+|++++++.+.... ..
T Consensus 160 ~~~~~~~~-~~G~~~~~~Ei~eq~~~~~~~~D~vvv~vGtGgt~aGl~~~~~~~~~~~~vigV~~~~~~~~~~~~~~~~~ 238 (337)
T TIGR01274 160 GCSDHPLG-GLGFVGFAFEVREQEGELGFKFDYVVVCSVTGSTQAGMVAGFAADGRKDRVIGIDASATPEQTRAQILRIA 238 (337)
T ss_pred CCCCCccc-hhHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHH
Confidence 533 333 467888899999995 347999999999999999999999999999999999999997663221 11
Q ss_pred CcccccCCCCC--Cc--cccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeec-chHHHHHHHHHHHhcCC-CCCCEEEE
Q 020528 223 PHKIQGIGAGF--IP--GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGI-SSGAATAAAIQIAKRPE-NAGKLIVV 296 (325)
Q Consensus 223 ~~~~~gl~~~~--~~--~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p-~sg~a~aa~~~~~~~~~-~~~~~vv~ 296 (325)
.+.+++++.+. .+ +.+..+++++.+.|+|+|++++++++++++|+++|| +||+++++++++.+++. .++++||+
T Consensus 239 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~eGi~~ep~ytg~~~aa~~~~~~~g~~~~~~~vv~ 318 (337)
T TIGR01274 239 RNTAEKIGLERDITEDDVVLDTRFAYPEYGVPNEGTLEAIRLCAKMEGVLTDPVYEGKSMHGMIEMIRRGEFKEGSNVLY 318 (337)
T ss_pred HHHHHHhCCCCCcCccceEEeccccCCCcCCCCHHHHHHHHHHHHhcCCccCcchHHHHHHHHHHHHhcCCCCCCCEEEE
Confidence 23344554332 11 345667789999999999999999999999999999 59999999999988775 56889999
Q ss_pred EeCCC
Q 020528 297 VFPSF 301 (325)
Q Consensus 297 i~t~~ 301 (325)
+||+|
T Consensus 319 ~htGG 323 (337)
T TIGR01274 319 AHLGG 323 (337)
T ss_pred EeCCC
Confidence 99764
|
This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family. |
| >PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-49 Score=386.30 Aligned_cols=293 Identities=23% Similarity=0.243 Sum_probs=229.4
Q ss_pred HHHhhhhC-CCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHH
Q 020528 10 KDVTELIG-KTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFM 88 (325)
Q Consensus 10 ~~i~~~~~-~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~ 88 (325)
..+..+.| +|||+++++|++.+|.+||+|+|++|||||||+|.+...+..+++.|. .+.|+++|+||||.|+|++
T Consensus 262 ~~~~~~~grpTPL~~~~~Ls~~~G~~IylK~E~lnptGS~K~r~al~~~~~a~~~g~----~~vi~e~gsGnhG~A~A~~ 337 (610)
T PRK13803 262 RLLQNYAGRPTPLTEAKRLSDIYGARIYLKREDLNHTGSHKINNALGQALLAKRMGK----TRIIAETGAGQHGVATATA 337 (610)
T ss_pred HHHHHhCCCCCcceeHHHHHHhhCCEEEEEeCCCCCcccHHHHHHHHHHHHHHHcCC----CEEEEecChHHHHHHHHHH
Confidence 34456676 799999999998778899999999999999999999999999988885 2456678999999999999
Q ss_pred HHHcCCeEEEEecCCC---CHHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHH-HHHhCCCeEEeCCCC---C--CcchH
Q 020528 89 AAAKGYRLIITMPASM---SLERRMVLLAFGAELVLTDPA-RGMKGAVQKAEE-IRDKTPNSYVLQQFE---N--PANPK 158 (325)
Q Consensus 89 a~~~g~~~~i~~p~~~---~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~-~~~~~~~~~~~~~~~---n--~~~~~ 158 (325)
|+++|++|+||||... +..++.+|+.+||+|+.++.. .++.++...+.+ +..+.++.+|+.++. + |.+..
T Consensus 338 aa~~Gl~~~I~m~~~~~~~~~~nv~~m~~~GA~Vi~v~~~~~~~~~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v~ 417 (610)
T PRK13803 338 CALFGLKCTIFMGEEDIKRQALNVERMKLLGANVIPVLSGSKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVA 417 (610)
T ss_pred HHHcCCcEEEEEeCCcccchhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHHH
Confidence 9999999999999863 356889999999999999852 356666555544 334444666764432 2 33334
Q ss_pred hHHhchHHHHHhhhC----CCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCc--------cccCCCCC----
Q 020528 159 IHYETTGPEIWKGTG----GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESA--------VLSGGKPG---- 222 (325)
Q Consensus 159 ~g~~t~~~Ei~~ql~----~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~--------~~~~~~~~---- 222 (325)
.||++++.||.+|+. ..||+||+|+|+||+++|++.+|++ .|++|||||||.++. ++..+.+.
T Consensus 418 ~~~~tig~Ei~~Q~~~~~g~~pD~vV~~vGgGg~~~Gi~~~f~~-~~~v~iigVE~~g~~~~~~~~~a~l~~g~~g~~~g 496 (610)
T PRK13803 418 YFQSVIGEEAKEQLKEQTGKLPDAIIACVGGGSNAIGIFYHFLD-DPSVKLIGVEAGGKGVNTGEHAATIKKGRKGVLHG 496 (610)
T ss_pred HHhhHHHHHHHHHHHHhhCCCCCEEEEEeCcCHhHHHHHHHHhh-CCCceEEEEecCCCCcccccccchhhcCCeeeecc
Confidence 589999999999984 2699999999999999999999964 789999999999862 23333221
Q ss_pred ---------------C-cccccCCCCCC-cccc--ccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHH
Q 020528 223 ---------------P-HKIQGIGAGFI-PGVL--DVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQI 283 (325)
Q Consensus 223 ---------------~-~~~~gl~~~~~-~~~~--~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~ 283 (325)
+ +...|+..+.+ |..+ .....++.+.|+|+|+++++++|+++||++++++||+++|+++++
T Consensus 497 ~~~~~~~~~~g~~~~~~sia~gl~~~gvg~~~~~~~~~~~~~~v~Vtd~ea~~a~~~La~~eGi~~~~ssa~alA~~~~~ 576 (610)
T PRK13803 497 SMTYLMQDENGQILEPHSISAGLDYPGIGPMHANLFETGRAIYTSVTDEEALDAFKLLAKLEGIIPALESSHALAYLKEG 576 (610)
T ss_pred ceeeeecccCCcccCCceeeccCCCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHHh
Confidence 1 12234432221 2222 123345789999999999999999999999999999999999987
Q ss_pred HhcCCCCCCEEEEEeCCCCCCCcch
Q 020528 284 AKRPENAGKLIVVVFPSFGERYLSS 308 (325)
Q Consensus 284 ~~~~~~~~~~vv~i~t~~g~~~~~~ 308 (325)
+... .++++||+++||+|+||+++
T Consensus 577 ~~~~-~~~~~Vvv~lsG~G~kd~~~ 600 (610)
T PRK13803 577 RKKF-KKKDIVIVNLSGRGDKDIPT 600 (610)
T ss_pred chhc-CCCCeEEEEeCCCCcCCHHH
Confidence 5442 35789999999999999886
|
|
| >PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-48 Score=357.09 Aligned_cols=286 Identities=21% Similarity=0.244 Sum_probs=222.7
Q ss_pred hhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCC--CChhhHHHHHHHHHHHHhCCCCCCCeEEE--ecCCChhHH
Q 020528 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPC--SSVKDRIGYSMIADAEEKGLIRPGESVLI--EPTSGNTGI 83 (325)
Q Consensus 8 ~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~npt--GS~K~R~a~~~~~~a~~~g~~~~g~~~vv--~~ssGN~g~ 83 (325)
.+.++.+.+++|||++++++++..|.+||+|+|++||+ ||||+|++.+++..+.++|. .+|+ ++|+||||+
T Consensus 11 ~~~~~~l~~~~TPl~~~~~l~~~~g~~v~~K~E~l~~~~~gg~K~R~~~~~l~~a~~~G~-----~~vv~~~~ssGN~g~ 85 (329)
T PRK14045 11 KFPRVELIPWETPIQYLPNISRELGADVYVKRDDLTGLGIGGNKIRKLEYLLGDALSRGA-----DVVITVGAVHSNHAF 85 (329)
T ss_pred cCCCcccCCCCCCcccchhhHHHhCCeEEEEcccccCCCCCcchHHHHHhHHHHHHHcCC-----CEEEEeCccHHHHHH
Confidence 34678889999999999999876778999999999996 89999999999999999887 4566 689999999
Q ss_pred HHHHHHHHcCCeEEEEecCCCCHH-HHHHHHHcCCEEEEeCCCCC---hhHHHHHHHHHHHhCCCeEE-eCCCCCCcchH
Q 020528 84 GLAFMAAAKGYRLIITMPASMSLE-RRMVLLAFGAELVLTDPARG---MKGAVQKAEEIRDKTPNSYV-LQQFENPANPK 158 (325)
Q Consensus 84 alA~~a~~~g~~~~i~~p~~~~~~-~~~~~~~~Ga~v~~~~~~~~---~~~~~~~a~~~~~~~~~~~~-~~~~~n~~~~~ 158 (325)
|+|++|+.+|++|++|+|...+.. +..+++.+||+++.++...+ .+.+.+.+.++.++.+..|+ .+++.|+.++.
T Consensus 86 alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~n~~~~~ 165 (329)
T PRK14045 86 VTGLAAKKLGLDAVLVLRGKEELKGNYLLDKIMGIETRVYEAKDSFELMKYAEEVAEELKGEGRKPYIIPPGGASPVGTL 165 (329)
T ss_pred HHHHHHHHcCCeEEEEEeCCCCCCcCHHHHHHCCCEEEEECCCcccchHHHHHHHHHHHHhcCCCEEEECCCCCchhHHH
Confidence 999999999999999999875433 66778999999998874322 23455566666655534555 45567887754
Q ss_pred hHHhchHHHHHhhhC---CCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcc-ccC----CCCCCcccccCC
Q 020528 159 IHYETTGPEIWKGTG---GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV-LSG----GKPGPHKIQGIG 230 (325)
Q Consensus 159 ~g~~t~~~Ei~~ql~---~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~-~~~----~~~~~~~~~gl~ 230 (325)
|+.+...||++|+. ..+|+||+|+|||||++|+++++|..+|++|||+|++.+... +.. .......+.+++
T Consensus 166 -g~~~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~~~~~~~~~~~~~~~~~~~~~g~~ 244 (329)
T PRK14045 166 -GYVRAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGSFGEKMKEKVKNLVKKTKELLGVK 244 (329)
T ss_pred -HHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 44444459999985 379999999999999999999999999999999999976321 111 000112234444
Q ss_pred CCC-CccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeec-chHHHHHHHHHHHhcCCCCCCEEEEEeCCCC
Q 020528 231 AGF-IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGI-SSGAATAAAIQIAKRPENAGKLIVVVFPSFG 302 (325)
Q Consensus 231 ~~~-~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p-~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g 302 (325)
... .|..++..+ |++..++ +|+++++++++++|||++|| +||++++++++++++.. .+++||+|||||-
T Consensus 245 ~~~~~~~~~d~~~-~~y~~~~-~e~~~~~~~la~~eGi~ldpvytgk~~~a~~~~~~~~~-~~~~iv~ihtGG~ 315 (329)
T PRK14045 245 VKVQEPELYDYSF-GEYGKIT-KEVAKLIRSVGTMEGLILDPVYTGKAFYGLMDLAKKGE-LGEKILFIHTGGI 315 (329)
T ss_pred CCccceEeccccc-CCCCCCC-HHHHHHHHHHHHhhCCCCccchHHHHHHHHHHHHHcCC-CCCCEEEEECCCc
Confidence 333 333334433 7766676 69999999999999999999 99999999999998763 3679999998773
|
|
| >COG0498 ThrC Threonine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-47 Score=354.30 Aligned_cols=288 Identities=24% Similarity=0.262 Sum_probs=244.7
Q ss_pred HHhhhhCCCCceecccccCCCC---ceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHH
Q 020528 11 DVTELIGKTPLVYLNRIVDGCV---ARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAF 87 (325)
Q Consensus 11 ~i~~~~~~TPL~~~~~l~~~~~---~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 87 (325)
.+.+..+.||+++.+++...++ .++|+|.|++|||||||||++..+++.+.+.|. .+|+++||||+|.|+|+
T Consensus 69 ~~~l~eg~tp~~~~~~~~~~l~~~~~~lyvk~~~~nPT~SFKDrg~~~~~~~~~~~g~-----~~I~~ASSGnTgAs~aa 143 (411)
T COG0498 69 AVSLGEGGTPLYKAPALAAPLGVLNDNLYVKELGHNPTGSFKDRGMTVLVSLAKELGA-----KTILCASSGNTGASAAA 143 (411)
T ss_pred hhhhhhccCccccCcccchhhccCCcceehhhhccCCCcchhhhhHHHHHHHHHHhcC-----CEEEEeCCchHHHHHHH
Confidence 4567889999999988776554 359999999999999999999999999999884 46999999999999999
Q ss_pred HHHHcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHH
Q 020528 88 MAAAKGYRLIITMPAS-MSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGP 166 (325)
Q Consensus 88 ~a~~~g~~~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~ 166 (325)
++++.|++|+|++|.+ ++..|+.++..+|++++.+++ ++|++++.+++++++. ++++....-||.. ++||.|+++
T Consensus 144 ya~rag~~v~Vl~P~g~vs~~k~~q~~~~ga~~i~v~G--~fDda~~~vk~~~~~~-~~~~~~nsiNp~r-legq~t~~f 219 (411)
T COG0498 144 YAARAGLKVFVLYPKGKVSPGKLAQMLTLGAHVIAVDG--NFDDAQELVKEAANRE-GLLSAVNSINPYR-LEGQKTYAF 219 (411)
T ss_pred HhccCCCeEEEEecCCCCCHHHHHHHHhcCCEEEEEcC--cHHHHHHHHHHHHhhC-CceeeccccCHHH-hhhhhhhHh
Confidence 9999999999999998 999999999999999999997 6899999999999876 5566655556665 789999999
Q ss_pred HHHhhhC-CCCCEEEEecCCchhHHHHHHHHHhhCCC------cEEEEEecCCCccccCCCC----C-CcccccCCCCCC
Q 020528 167 EIWKGTG-GKIDALVSGIGTGGTVTGAGKYLKEHNPE------IKLYGVEPVESAVLSGGKP----G-PHKIQGIGAGFI 234 (325)
Q Consensus 167 Ei~~ql~-~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~------~~vigV~~~~~~~~~~~~~----~-~~~~~gl~~~~~ 234 (325)
||++|+. ..||+|++|+|+||++.|+++++++..|. +++.+|++++..++..... . .+...+|..+.
T Consensus 220 e~~~ql~~~~p~~v~vPvGn~gni~a~~~g~~~~~~~g~i~~~p~~~~vqaeg~~p~~~~~~~~~~~~~T~a~am~I~~- 298 (411)
T COG0498 220 EIAEQLGWKAPDHVVVPVGNGGNLLAIYKGFKEGLPIGKIDKAPNMNGVQAEGFSPGVYAWKEGRETPETIAPAMDIGN- 298 (411)
T ss_pred HHHHHhCCCCCCeEEEeCCchHHHHHHHHHHHhcccccchhcCchhhhhhHhhccchhhhcccccccccccccccccCC-
Confidence 9999997 47999999999999999999999999874 7889999999877643211 1 22334443332
Q ss_pred cccccc------ccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcch
Q 020528 235 PGVLDV------NLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSS 308 (325)
Q Consensus 235 ~~~~~~------~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~ 308 (325)
|.++.+ ......+.|||+|++++++++++.+|+++||+||+++++++++.++...+++++|++.|++|.|+.++
T Consensus 299 p~n~~r~l~a~~es~g~~~~vsdeEi~~a~~~l~~~eG~~~eP~sA~ava~l~k~~~~~i~~~~~vV~v~Tg~~~K~~~~ 378 (411)
T COG0498 299 PSNWERALFALRESGGLAVAVSDEEILEAIKLLAEREGILIEPHSAVAVAALLKLREKIIDPDETVVLVLTGHGLKFPDT 378 (411)
T ss_pred CCCHHHHHHHHHhcCCceEEeCHHHHHHHHHHHHHhCCcccCccHHHHHHHHHHHHHhhcCCCCeEEEEecCCcccChhH
Confidence 544432 22355899999999999999999999999999999999999998762256789999999999999987
|
|
| >COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=272.04 Aligned_cols=294 Identities=25% Similarity=0.312 Sum_probs=227.4
Q ss_pred HHHhhhhCC-CCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHH
Q 020528 10 KDVTELIGK-TPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFM 88 (325)
Q Consensus 10 ~~i~~~~~~-TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~ 88 (325)
..+..+.|+ |||+..++|++.++++||+|+|++|+||+||.+.+...+.-|++.|+ ++.|.+.+.|.||.|.|.+
T Consensus 47 ~~l~~Y~GRptpLy~a~~Lt~~~gakiyLKREDL~HtGAHKiNN~lGQ~LLAkrMGK----~riIAETGAGQHGVAtAta 122 (396)
T COG0133 47 YLLKDYAGRPTPLYFAERLTEHLGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----TRIIAETGAGQHGVATATA 122 (396)
T ss_pred HHHHHhCCCCChhHHHHHHHHhhCceEEEehhhhcccchhhHHHHHHHHHHHHHhCC----ceEEeecCCCcccHHHHHH
Confidence 344567775 99999999999999999999999999999999999999999999998 4667788889999999999
Q ss_pred HHHcCCeEEEEecCC---CCHHHHHHHHHcCCEEEEeCC-CCChhHHHHHHHHHHHh-CCCeEEeC-----CCCCCcchH
Q 020528 89 AAAKGYRLIITMPAS---MSLERRMVLLAFGAELVLTDP-ARGMKGAVQKAEEIRDK-TPNSYVLQ-----QFENPANPK 158 (325)
Q Consensus 89 a~~~g~~~~i~~p~~---~~~~~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a~~~~~~-~~~~~~~~-----~~~n~~~~~ 158 (325)
|+++|++|+|+|-.. .+..++-+|+.+||+|+.|.. +.+..++.+.|.+-+-. -+..||+. |.--|....
T Consensus 123 ~A~fgl~C~iYMGa~Dv~RQ~~NVfRM~LlGA~V~pV~sGs~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVR 202 (396)
T COG0133 123 AALFGLECVIYMGAEDVERQALNVFRMRLLGAEVVPVTSGSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVR 202 (396)
T ss_pred HHHhCCceEEEecchhhhhcccchhhhhhcCceEEEeccCCchHHHHHHHHHHHHHhccccceEEEeeccCCCCchHHHH
Confidence 999999999999874 456678899999999999964 55678888888665543 34566652 111233334
Q ss_pred hHHhchHHHHHhhh----CCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCc--------cccCCCCCC---
Q 020528 159 IHYETTGPEIWKGT----GGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESA--------VLSGGKPGP--- 223 (325)
Q Consensus 159 ~g~~t~~~Ei~~ql----~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~--------~~~~~~~~~--- 223 (325)
.-|+.|+.|.-+|+ +.-||.||.|||+|++..|++.-|.. .+++++||||+.+.. ++..|.++.
T Consensus 203 dFQ~vIG~E~k~Qile~egrlPD~vvACVGGGSNAiG~F~~Fi~-d~~V~LiGvEaaG~Gi~t~~HaAtl~~G~~GvlhG 281 (396)
T COG0133 203 DFQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGKGIETGKHAATLTAGRPGVLHG 281 (396)
T ss_pred HHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCcchhhhcccccC-CCCceEEEeccCcCccCCCccceeecCCCceeeec
Confidence 57999999988885 35699999999999999999888765 368999999998763 233333210
Q ss_pred -----------ccc--ccCCCCC-----Cccccccc--cCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHH
Q 020528 224 -----------HKI--QGIGAGF-----IPGVLDVN--LLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQI 283 (325)
Q Consensus 224 -----------~~~--~gl~~~~-----~~~~~~~~--~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~ 283 (325)
... ..|+.+. -|..-..+ ---+.+.|+|+|++++.+.|.+.|||+....|+.|+|.+.++
T Consensus 282 ~~tyllQd~~GQi~e~hSISAGLDYPgVGPeha~l~~~gRa~y~~itD~EAl~af~~L~r~EGIIPALESsHAlA~a~kl 361 (396)
T COG0133 282 MKTYLLQDEDGQILESHSISAGLDYPGVGPEHAYLKDIGRAEYVSITDEEALEAFQLLSRLEGIIPALESSHALAYALKL 361 (396)
T ss_pred ccceeeEcCCCCEeeeeeeccCCCCCCCChhHHHHHhcCceeEEecChHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHh
Confidence 001 1122221 12211111 123478899999999999999999999999999999999999
Q ss_pred HhcCCCCCCEEEEEeCCCCCCCcchh
Q 020528 284 AKRPENAGKLIVVVFPSFGERYLSSV 309 (325)
Q Consensus 284 ~~~~~~~~~~vv~i~t~~g~~~~~~~ 309 (325)
+.... +++.+|+-+++.|+|++.++
T Consensus 362 a~~~~-~~~~ivvnlSGRGDKDv~tv 386 (396)
T COG0133 362 APKLP-KDEIIVVNLSGRGDKDVFTV 386 (396)
T ss_pred chhcC-CCcEEEEEccCCCcccHHHH
Confidence 87653 55578888888899998873
|
|
| >cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=289.31 Aligned_cols=273 Identities=15% Similarity=0.124 Sum_probs=213.4
Q ss_pred CCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHH---HHHHHHhCCCCCCCeEEEecCCChhHHH-HHHHHHHcCC
Q 020528 19 TPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSM---IADAEEKGLIRPGESVLIEPTSGNTGIG-LAFMAAAKGY 94 (325)
Q Consensus 19 TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~---~~~a~~~g~~~~g~~~vv~~ssGN~g~a-lA~~a~~~g~ 94 (325)
+||.++.. ++|++..+++||||||||++..+ +.++.++. .+...|+++||||+|.| ++.++.+.|+
T Consensus 88 ~pl~~l~~-------~~~~lELfhGPT~sFKD~a~~~l~~l~~~~~~~~---~~~~~Il~ATSGdTG~Aa~aaf~~~~gi 157 (460)
T cd01560 88 APLVQLGD-------NLYVLELFHGPTLAFKDMALQFLGRLLEYFLKRR---NERITILVATSGDTGSAAIEGFRGKPNV 157 (460)
T ss_pred cceEEeCC-------CcEEeeeeeCCCcchHHhHHHHHHHHHHHHHHhc---CCCeEEEEcCCCcHHHHHHHHHhCcCCC
Confidence 78777652 69999999999999999999876 66676541 12378999999999999 5888999999
Q ss_pred eEEEEecCC-CCHHHHHHHHHcCC---EEEEeCCCCChhHHHHHHHHHHHhC-----CCeEEeCCCCCCcchHhHHhchH
Q 020528 95 RLIITMPAS-MSLERRMVLLAFGA---ELVLTDPARGMKGAVQKAEEIRDKT-----PNSYVLQQFENPANPKIHYETTG 165 (325)
Q Consensus 95 ~~~i~~p~~-~~~~~~~~~~~~Ga---~v~~~~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~n~~~~~~g~~t~~ 165 (325)
+|+|++|.+ ++..+..+|..+|+ +++.+++ ++|+|++.+++++++. -+++..|.. |+.. +.+|.+.+
T Consensus 158 ~v~Vl~P~g~vs~~Q~~Qm~t~g~~Nv~vi~V~G--~fDd~q~~vk~~~~d~~~~~~~~l~saNSi-N~~R-i~~Q~~yy 233 (460)
T cd01560 158 DVVVLYPKGGVSPIQELQMTTLPADNVHVVAVEG--DFDDCQSLVKALFADEDFNKKLKLSSANSI-NWAR-ILAQIVYY 233 (460)
T ss_pred EEEEEEcCCCCCHHHHHHHHhhCCCceEEEEEcC--CHHHHHHHHHHHhcChhhHhcceEEEEecc-CHHH-HHHHHHHH
Confidence 999999996 99999999999996 7888876 6999999999987652 135555553 5554 78999999
Q ss_pred HHHHhhhCC----CCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcc---ccCCCCCC--cccccCCCCC---
Q 020528 166 PEIWKGTGG----KIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV---LSGGKPGP--HKIQGIGAGF--- 233 (325)
Q Consensus 166 ~Ei~~ql~~----~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~---~~~~~~~~--~~~~gl~~~~--- 233 (325)
+|+++|+.+ .||+|+||+|+||++.|++.+.+...|-.|+|+++..+... +..|.... .....+++++
T Consensus 234 f~a~~ql~~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~a~n~n~il~~~~~~G~y~~~~~~~~T~spamdI~ 313 (460)
T cd01560 234 FYAYLQLLKRGEGEKVEFSVPTGNFGNILAGYYAKKMGLPIKKLIVATNENDVLRRFFKTGRYDRRESLKQTLSPAMDIL 313 (460)
T ss_pred HHHHHHhccccCCCCCEEEEECCcHHHHHHHHHHHHcCCCCccEEEEeCCChHHHHHHHcCCCcCCCCCCCCcCchhhcC
Confidence 999999963 58999999999999999999988767878999976655421 12343221 1223333322
Q ss_pred CccccccccC-----C-------------------------------eEEEeCHHHHHHHHHHHHHHcCCeeecchHHHH
Q 020528 234 IPGVLDVNLL-----D-------------------------------ETVQISSEEAIETAKLLALKEGLLVGISSGAAT 277 (325)
Q Consensus 234 ~~~~~~~~~~-----d-------------------------------~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~ 277 (325)
.|+++.+-+. | ..+.|+|+|+.++++++++++|+++||+||+++
T Consensus 314 ~psn~eR~L~~l~~~~g~~~~~~m~~~~~~g~~~~~~~~l~~~~~~f~a~~vsD~ei~~~i~~~~~~~G~~vdPhtAva~ 393 (460)
T cd01560 314 KSSNFERLLFLLAGRDRTKVKMLMEEFEATGFLSLPKEELKKLREDFSSGSVSDEETLETIREVYEETGYLIDPHTAVGV 393 (460)
T ss_pred CCCCHHHHHHHHhCCCHHHHHHHHHHHHhcCCEecCHHHHHhhhccceEEEECHHHHHHHHHHHHHhcCEEECchHHHHH
Confidence 2444332110 1 468999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCEEEEEeCCCCCCCcch
Q 020528 278 AAAIQIAKRPENAGKLIVVVFPSFGERYLSS 308 (325)
Q Consensus 278 aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~ 308 (325)
+++.++.++ +++++|++.|+++.|+.+.
T Consensus 394 aa~~~~~~~---~~~~~V~l~Ta~p~Kf~~~ 421 (460)
T cd01560 394 RAAERVRKS---PGTPGVVLSTAHPAKFPEA 421 (460)
T ss_pred HHHHHHHhc---cCCCEEEEecCCcccCHHH
Confidence 999887654 3467899999999999776
|
The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins. |
| >PRK09225 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=289.79 Aligned_cols=274 Identities=15% Similarity=0.132 Sum_probs=212.7
Q ss_pred CCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHH---HHHHHHHhCCCCCCCeEEEecCCChhHHHH-HHHHHHcC
Q 020528 18 KTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYS---MIADAEEKGLIRPGESVLIEPTSGNTGIGL-AFMAAAKG 93 (325)
Q Consensus 18 ~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~---~~~~a~~~g~~~~g~~~vv~~ssGN~g~al-A~~a~~~g 93 (325)
.+||.+++. ++|+..-+++||||||||++.. ++.++.+ +. ...|+++||||+|.|+ +.++.+.|
T Consensus 88 ~~pl~~l~~-------~~~~lELfhGPT~sFKD~a~~~l~~~l~~a~~-~~----~~~Il~ATSGdtG~Aa~aaf~~~~g 155 (462)
T PRK09225 88 IAPLVQLDD-------NLYVLELFHGPTLAFKDFALQFLAQLLEYVLK-GE----KITILGATSGDTGSAAAEAFRGKPN 155 (462)
T ss_pred ccceEEeCC-------CceeHhhccCCccchhhhHHHHHHHHHHHHHh-CC----CcEEEEcCCCcHHHHHHHHHhCcCC
Confidence 378877642 6999999999999999999988 7888877 42 3689999999999988 78899999
Q ss_pred CeEEEEecCC-CCHHHHHHHHHc-CCEEEEeCCCCChhHHHHHHHHHHHhC-----CCeEEeCCCCCCcchHhHHhchHH
Q 020528 94 YRLIITMPAS-MSLERRMVLLAF-GAELVLTDPARGMKGAVQKAEEIRDKT-----PNSYVLQQFENPANPKIHYETTGP 166 (325)
Q Consensus 94 ~~~~i~~p~~-~~~~~~~~~~~~-Ga~v~~~~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~n~~~~~~g~~t~~~ 166 (325)
++|+|++|++ ++..++++|..+ |++|+.+....++|+|++.+++++++. -+++..|.. |+.. +.+|.++++
T Consensus 156 i~~~V~~P~g~vs~~q~~Qm~t~~g~nv~vi~V~G~fDD~q~~vk~~~~d~~~~~~~~l~saNSi-N~~R-i~gQ~~yyf 233 (462)
T PRK09225 156 VRVVILYPKGKVSPVQEKQMTTLQGDNIHVVAVEGNFDDCQALVKAAFNDEELKEKLKLSSANSI-NIGR-LLAQIVYYF 233 (462)
T ss_pred CEEEEEEcCCCCCHHHHHHHHhhcCCCeEEEEeCCCHHHHHHHHHHHhhchhhhhcCceEEEecc-CHHH-HHHHHHHHH
Confidence 9999999996 999999999999 998744433347999999999987652 145666664 5655 789999999
Q ss_pred HHHhhhCC---CCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcc---ccCCCCCCc-ccccCCCCC---Ccc
Q 020528 167 EIWKGTGG---KIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV---LSGGKPGPH-KIQGIGAGF---IPG 236 (325)
Q Consensus 167 Ei~~ql~~---~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~---~~~~~~~~~-~~~gl~~~~---~~~ 236 (325)
|+++|+.+ .||+|+||+|+||++.|.+.+.+.-.|-.|+|+++..+... +..|...+. ....++.++ .|+
T Consensus 234 ea~~ql~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~A~n~n~~l~~~~~~G~y~~~~~~~T~s~amdI~~ps 313 (462)
T PRK09225 234 YAYLQLGIEAGEKVNFSVPSGNFGNILAGYYAKKMGLPIKRLIVATNENDVLTRFLKTGVYDPRPTVATLSPAMDISVSS 313 (462)
T ss_pred HHHHHhccccCCCCEEEEECCcHHHHHHHHHHHHcCCCcceEEEEecCChHHHHHHHcCCCccCCCCCCcCchhhcCCCC
Confidence 99999964 38999999999999999999966656777999998444321 123432211 222333221 244
Q ss_pred cccc------------c---------cCC---------------eEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHH
Q 020528 237 VLDV------------N---------LLD---------------ETVQISSEEAIETAKLLALKEGLLVGISSGAATAAA 280 (325)
Q Consensus 237 ~~~~------------~---------~~d---------------~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~ 280 (325)
++.+ - .-. ..+.|+|+|+.++++++++++|+++||+||++++++
T Consensus 314 n~eR~l~~~~~~~~~~v~~~m~~l~~~gg~~~~~~~~~~~~~~f~a~~vsD~ei~~ai~~~~~~~G~~~dPhtAva~aa~ 393 (462)
T PRK09225 314 NFERLLFDLLGRDAAAVEELMEDLEEKGEYDLSDEELAALREDFSAGSVSDEETLATIREVYEEYGYLIDPHTAVAYKAA 393 (462)
T ss_pred cHHHHHHHhcCCcHHHHHHHHHHHHHcCCcccCHHHHHHhhhcceEEEECHHHHHHHHHHHHHhCCEEECchHHHHHHHH
Confidence 4333 0 001 468899999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCEEEEEeCCCCCCCcchh
Q 020528 281 IQIAKRPENAGKLIVVVFPSFGERYLSSV 309 (325)
Q Consensus 281 ~~~~~~~~~~~~~vv~i~t~~g~~~~~~~ 309 (325)
.++. .+++++|++.|+++.|+.+.+
T Consensus 394 ~~~~----~~~~~~V~l~Ta~p~Kf~~~v 418 (462)
T PRK09225 394 REYL----DPGEPGVVLSTAHPAKFPEVV 418 (462)
T ss_pred HHhh----CCCCCEEEEecCCccCCHHHH
Confidence 8863 245689999999999998763
|
|
| >COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=252.92 Aligned_cols=289 Identities=20% Similarity=0.209 Sum_probs=228.6
Q ss_pred hhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCC--CCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCC--ChhHH
Q 020528 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEP--CSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTS--GNTGI 83 (325)
Q Consensus 8 ~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~np--tGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ss--GN~g~ 83 (325)
...++....++||+.+++++++.+|.+||+|||++.+ .|.+|.|...+++.+|.++|. +++|+.++ +||.+
T Consensus 5 rf~R~~l~~~pTPiq~L~rls~~lg~eiYiKRDD~t~l~~gGNK~RKLefll~eal~~g~-----dTlvT~GgiQSNh~r 79 (323)
T COG2515 5 RFPRMELIFGPTPIQKLPRLSAHLGVEIYIKRDDLTGLAFGGNKIRKLEFLLGEALRKGA-----DTLVTYGGIQSNHVR 79 (323)
T ss_pred cCCccccCCCCChhhhHHHHHHhcCeEEEEEcccccccccCccHHHHHHHHHhhhhhcCC-----cEEEEecccchhHHH
Confidence 3456667778999999999999989999999999966 789999999999999999887 78999888 99999
Q ss_pred HHHHHHHHcCCeEEEEecCCC----CHHHHHHHHHcCCEEEEeCCCCCh--hHHHHHHHHHHHhCCCeEEeCCC-C-CCc
Q 020528 84 GLAFMAAAKGYRLIITMPASM----SLERRMVLLAFGAELVLTDPARGM--KGAVQKAEEIRDKTPNSYVLQQF-E-NPA 155 (325)
Q Consensus 84 alA~~a~~~g~~~~i~~p~~~----~~~~~~~~~~~Ga~v~~~~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~-~-n~~ 155 (325)
++|++|+++|++|+.++..-. -..+....+.+|+++..++...++ +...+..++..++.++..|+.|- . ||.
T Consensus 80 ~tAavA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e~~~~~g~kpyvIp~GG~~~~ 159 (323)
T COG2515 80 QTAAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEELAEEVRKQGGKPYVIPEGGSSPL 159 (323)
T ss_pred HHHHHHHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHHHHHHHHhcCCCCcEeccCCcCcc
Confidence 999999999999999987654 234667778899999999976555 33334444444444444444333 2 333
Q ss_pred chHhHHhchHHHHHhhhC--CCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCC---CCCcccccCC
Q 020528 156 NPKIHYETTGPEIWKGTG--GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGK---PGPHKIQGIG 230 (325)
Q Consensus 156 ~~~~g~~t~~~Ei~~ql~--~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~---~~~~~~~gl~ 230 (325)
...||...+.||.+|.. -++|+||+++|+|||.||+..++....++.+|||+....++.....+ .....++.++
T Consensus 160 -g~lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~~v~~~~~~~~~qv~~L~~~~a~~~~ 238 (323)
T COG2515 160 -GALGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSADPEKLKEQVLNLAQATAELLG 238 (323)
T ss_pred -ccccHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhhccCCCceEEEeecCCHHHHHHHHHHHHHHHHHHcC
Confidence 24589999999999986 57999999999999999999999999999999999887775432110 0111222222
Q ss_pred CC-CCccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeec-chHHHHHHHHHHHhcCC-CCCCEEEEEeCCCC
Q 020528 231 AG-FIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGI-SSGAATAAAIQIAKRPE-NAGKLIVVVFPSFG 302 (325)
Q Consensus 231 ~~-~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p-~sg~a~aa~~~~~~~~~-~~~~~vv~i~t~~g 302 (325)
.. ...+.++.++....|.++.+|.+++.+.+++.||+.++| ++|+++.++++++++++ .++++|++|||+|.
T Consensus 239 ~~~~~~v~~~~dy~~~~Yg~p~~e~~e~i~~~~~~eGillDpVYtgKam~Glid~~~k~~f~~~~~vLfiHtGG~ 313 (323)
T COG2515 239 LGSEADVLLSDDYHHPGYGKPNEEDIEAIKLLARLEGILLDPVYTGKAMYGLIDLARKGEFPDGSPVLFIHTGGA 313 (323)
T ss_pred CCCCceEEEEecccCCccCCcCHHHHHHHHHHHHhhCcccccccchHHHHHHHHHHhcccCCCCCceEEEEcCCc
Confidence 22 223345567778889999999999999999999999999 89999999999998877 56778999998774
|
|
| >COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=245.70 Aligned_cols=295 Identities=25% Similarity=0.298 Sum_probs=223.2
Q ss_pred hhh-CCCCceecccccCCC--CceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEe-cCCChhHHHHHHHH
Q 020528 14 ELI-GKTPLVYLNRIVDGC--VARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIE-PTSGNTGIGLAFMA 89 (325)
Q Consensus 14 ~~~-~~TPL~~~~~l~~~~--~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~-~ssGN~g~alA~~a 89 (325)
..+ .+|||++..+|.+.+ .++||+|.|+..||||||.+.|...+-.++..|. +.|++ .+.|.+|.|++.+|
T Consensus 73 ~~~gRPTPL~RA~~LE~~L~tparIYyK~Eg~tptGSHKiNTAlAqaYyak~eg~-----~rl~TETGAGQWGsAlslA~ 147 (432)
T COG1350 73 LQIGRPTPLIRAKNLEEALGTPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGA-----KRLTTETGAGQWGSALSLAA 147 (432)
T ss_pred HHhCCCCchhhhhhHHHHhCCCcEEEEEecccCCCCCCCcchHHHHHHHHHhcCc-----eeeecccCCchHHHHHHHHH
Confidence 445 589999999998554 4799999999999999999999999999999997 44554 45599999999999
Q ss_pred HHcCCeEEEEecCC---CCHHHHHHHHHcCCEEEEeCCCCC----------------hhHHHHHHHHHHHhCCCe-EEeC
Q 020528 90 AAKGYRLIITMPAS---MSLERRMVLLAFGAELVLTDPARG----------------MKGAVQKAEEIRDKTPNS-YVLQ 149 (325)
Q Consensus 90 ~~~g~~~~i~~p~~---~~~~~~~~~~~~Ga~v~~~~~~~~----------------~~~~~~~a~~~~~~~~~~-~~~~ 149 (325)
+.+|++|+|||-+. ..+.++.+|+.|||+|+..+.+.+ .--++..|.+.+-++++. |.+.
T Consensus 148 alf~lk~~V~Mvr~Sy~qKpyRk~lM~~yGa~V~pSPS~~Te~Grk~l~e~p~hPGSLGIAISEAiE~al~~~~~kY~lG 227 (432)
T COG1350 148 ALFGLKATVFMVRVSYYQKPYRKYLMELYGAEVVPSPSELTEFGRKILKEDPDHPGSLGIAISEAIEYALKNENTKYSLG 227 (432)
T ss_pred HHhCceeEEEEEehhhhcchHHHHHHHHhCCeecCCCcchhHHHHHHHhcCCCCCchhHHHHHHHHHHHHhCCCceecch
Confidence 99999999999875 577888999999999998874321 112566777777666544 4443
Q ss_pred CCCCCcchHhHHhchHHHHHhhh---CCCCCEEEEecCCchhHHHHHHHHHh-h--C-CCcEEEEEecCCCccccCCCCC
Q 020528 150 QFENPANPKIHYETTGPEIWKGT---GGKIDALVSGIGTGGTVTGAGKYLKE-H--N-PEIKLYGVEPVESAVLSGGKPG 222 (325)
Q Consensus 150 ~~~n~~~~~~g~~t~~~Ei~~ql---~~~~D~iv~pvG~Gg~~aGi~~~~k~-~--~-~~~~vigV~~~~~~~~~~~~~~ 222 (325)
..-|. ...||..+|+|..+|+ +..||++|.|||+|++++|+..-|-. . + ...++|+|+|..++.|..|...
T Consensus 228 SVlnh--vllhQTViGlEakkQle~~~e~PDv~igcvGGGSNfag~~yPfi~d~l~g~~~~~fiAvep~a~P~lT~GeY~ 305 (432)
T COG1350 228 SVLNH--VLLHQTVIGLEAKKQLEQAGEDPDVIIGCVGGGSNFAGLTYPFIGDKLRGKKETRFIAVEPKACPKLTKGEYR 305 (432)
T ss_pred hHHHH--HHHHHHHHhHHHHHHHHhcCCCCCEEEEeccCCCccccccchhhhhhhcCCceeEEEEeCCccCCccccceee
Confidence 33232 3679999999996665 56799999999999999999554432 2 1 1289999999999999876532
Q ss_pred Cc-----------ccccCCCCCCccccc-----------------cccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchH
Q 020528 223 PH-----------KIQGIGAGFIPGVLD-----------------VNLLDETVQISSEEAIETAKLLALKEGLLVGISSG 274 (325)
Q Consensus 223 ~~-----------~~~gl~~~~~~~~~~-----------------~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg 274 (325)
-+ ..-.|+...+|..+. ..-+-+....+.+|++++++.|++.||+...|.|+
T Consensus 306 YD~gDtagltPllKMyTlGhd~vpPpihAgGLRYHG~aPtls~L~~~Giv~a~ay~Q~Evfeaa~lFa~~EGiVPAPEsa 385 (432)
T COG1350 306 YDFGDTAGLTPLLKMYTLGHDYVPPPIHAGGLRYHGVAPTLSLLVKEGIVEARAYDQEEVFEAAVLFARTEGIVPAPESA 385 (432)
T ss_pred ccCCchhccchhhhhhccCCCccCCCcccccccccCcChHHHHHHHcCcccceecChHHHHHHHHHHHHhcCCccCCcch
Confidence 11 112445454444432 12234578899999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCC--CEEEEEeCCCCCCCcchhhhHHHHHH
Q 020528 275 AATAAAIQIAKRPENAG--KLIVVVFPSFGERYLSSVLFESVKKE 317 (325)
Q Consensus 275 ~a~aa~~~~~~~~~~~~--~~vv~i~t~~g~~~~~~~~~~~~~~~ 317 (325)
.|+.++++.+.+.+..+ +.|++-++++|..+++ -|++++.-
T Consensus 386 HAi~~aid~A~~a~~~geekvI~fnlSGHGllDL~--~Y~~yl~g 428 (432)
T COG1350 386 HAIKAAIDEALKAREEGEEKVILFNLSGHGLLDLS--AYDKYLEG 428 (432)
T ss_pred hhHHHHHHHHHhccccCceeEEEEeccCccccchh--hHHHHhhh
Confidence 99999999887766333 4555556666665555 47777654
|
|
| >KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-33 Score=244.62 Aligned_cols=294 Identities=23% Similarity=0.307 Sum_probs=214.3
Q ss_pred hHHHhhhhC-CCCceecccccCCC--CceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHH
Q 020528 9 AKDVTELIG-KTPLVYLNRIVDGC--VARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGL 85 (325)
Q Consensus 9 ~~~i~~~~~-~TPL~~~~~l~~~~--~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~al 85 (325)
...|..++| +|||++.++|.+.+ |++||+|+|++|||||+|.+.+...+..+.+.|+ +..|.+.+.|.||.|+
T Consensus 112 ~~eiy~y~gRpspL~~AkRLte~~q~ga~IylKrEdlnh~GsHKiNnav~QallakrlGk----knviaETGAGQhGvat 187 (477)
T KOG1395|consen 112 FLEIYKYLGRPSPLIRAKRLTEHCQTGARIYLKREDLNHTGSHKINNAVAQALLAKRLGK----KNVIAETGAGQHGVAT 187 (477)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHhCCCCEEEEEecCCCccccCCcccHHHHHHHHHHhcc----cceeeccCCCccchHH
Confidence 344554565 59999999998654 5899999999999999999999999999999998 3566677779999999
Q ss_pred HHHHHHcCCeEEEEecCC---CCHHHHHHHHHcCCEEEEeCC-CCChhHHHHHHHHHHHhC-CCeEEeCC-CCC----Cc
Q 020528 86 AFMAAAKGYRLIITMPAS---MSLERRMVLLAFGAELVLTDP-ARGMKGAVQKAEEIRDKT-PNSYVLQQ-FEN----PA 155 (325)
Q Consensus 86 A~~a~~~g~~~~i~~p~~---~~~~~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a~~~~~~~-~~~~~~~~-~~n----~~ 155 (325)
|.+|++.|++|+|+|-.. .+..++-+|+.+||+|+.+.. .....++-..+.++.-.+ +-.+|+.. -.. |.
T Consensus 188 A~a~a~FGl~C~v~mgAed~~rqalnvfrmrllGAkV~pv~sGt~tLrda~sea~r~wvt~~ett~y~~gs~~gphp~pt 267 (477)
T KOG1395|consen 188 ATACAKFGLDCTVYMGAEDYRRQALNVFRMRLLGAKVHPVTSGTRTLRDATSEAGRLWVTNSETTHYAAGSAIGPHPYPT 267 (477)
T ss_pred HHHHHHhCCceEEEechhHHHHHHHHHHHHHHhCceEeecCCCceehhcccchhhhhhhhhhheeeeeecccCCCCCcHH
Confidence 999999999999999875 577889999999999999874 234455555554443222 22344321 111 11
Q ss_pred chHhHHhchHHHHHhhh----CCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcc--------ccCCCCC-
Q 020528 156 NPKIHYETTGPEIWKGT----GGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV--------LSGGKPG- 222 (325)
Q Consensus 156 ~~~~g~~t~~~Ei~~ql----~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~--------~~~~~~~- 222 (325)
....-+.+|+-|-..|. +..||.||.|+|+|++.+|++.-|.. ...++.|+|+..+... +..+..+
T Consensus 268 ~vr~fhsvIg~Et~~Q~me~~g~~PD~vvaCvGGGSN~~Glf~pF~~-dk~v~~igveaagdg~dtp~hsatltagd~Gv 346 (477)
T KOG1395|consen 268 VVRTFHSVIGKETKIQQMEKFGKLPDAVVACVGGGSNSAGLFSPFIR-DKSVGMIGVEAAGDGVDTPKHSATLTAGDVGV 346 (477)
T ss_pred HHHHHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCCccccccchhhc-cchhheeeeeecccccCCcchhceeecccccc
Confidence 12235678888876664 35699999999999999999877764 3347889998877642 1112111
Q ss_pred ------------------Cccc-ccCCC-CCCcccccc--ccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHH
Q 020528 223 ------------------PHKI-QGIGA-GFIPGVLDV--NLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAA 280 (325)
Q Consensus 223 ------------------~~~~-~gl~~-~~~~~~~~~--~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~ 280 (325)
++.+ .||.- +.-|..-.. .-.-+++.|+|.|++++.+++++.|||+..|.+..|+++.
T Consensus 347 ~hG~~ty~lq~~dGqi~~phsIsAGLdYpGvgPels~~k~~grae~isitd~eclegfk~~srlEGIIPAlEssHAva~~ 426 (477)
T KOG1395|consen 347 FHGVTTYVLQDTDGQIFDPHSISAGLDYPGVGPELSHLKETGRAEFISITDAECLEGFKQLSRLEGIIPALESSHAVAGE 426 (477)
T ss_pred cccceeeeeeccCCccccCCccccCCCCCCCChhHHHHHhcCceeEEecChHHHHHHHHHHHHhcccccCCchhhHHHHH
Confidence 1111 12211 111221111 2235699999999999999999999999999999999998
Q ss_pred HHHHhcCCCCCCEEEEEeCCCCCCCcch
Q 020528 281 IQIAKRPENAGKLIVVVFPSFGERYLSS 308 (325)
Q Consensus 281 ~~~~~~~~~~~~~vv~i~t~~g~~~~~~ 308 (325)
.++.+.. .+++.+|+-+|+.|+|++..
T Consensus 427 ~~lck~l-~~~k~ivi~~sGrGdkDvqS 453 (477)
T KOG1395|consen 427 AELCKTL-PEDKVIVINISGRGDKDVQS 453 (477)
T ss_pred HHhcccc-CCCcEEEEEecCCCCchHHH
Confidence 8877654 47889999999999988764
|
|
| >COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-28 Score=209.68 Aligned_cols=287 Identities=21% Similarity=0.238 Sum_probs=232.0
Q ss_pred hhhCCCCceeccccc----C----CCCceEEEEeCCCCC-CCChhhHHHHHHHH-H----HHHhCCCCCC----------
Q 020528 14 ELIGKTPLVYLNRIV----D----GCVARIAAKLEMMEP-CSSVKDRIGYSMIA-D----AEEKGLIRPG---------- 69 (325)
Q Consensus 14 ~~~~~TPL~~~~~l~----~----~~~~~l~~K~E~~np-tGS~K~R~a~~~~~-~----a~~~g~~~~g---------- 69 (325)
.++..+||+..+.+. + ....++|+|++.+.| +||+|.|+-.+-+. + |.+.|.+.-.
T Consensus 74 ~GiIES~lv~i~~mq~~Le~~Y~~~i~G~llLK~DshLpIsGSIKARGGIYEVL~hAE~LAle~Gll~~~DDYs~L~~~~ 153 (443)
T COG3048 74 GGIIESPLVEIPAMQKRLEKEYQQPIPGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLEDDYSILLSEE 153 (443)
T ss_pred CCeeccchhhhHHHHHHHHHHhcCCCCcceeeeccCCCCcccceeccccHHHHHHHHHHHHHhcCcccccchHHHhhcHH
Confidence 456678998876654 1 123589999999999 89999999877653 3 4566765322
Q ss_pred ------CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCC
Q 020528 70 ------ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTP 143 (325)
Q Consensus 70 ------~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~ 143 (325)
...|.+.|+||.|.|+...++.+|++++|.|+.++..+|+.++|+.|.+|+.+.. +|..+.+..++.++..|
T Consensus 154 f~~FFs~ysIaVGSTGNLGlSIGI~sA~lGF~vtVHMSADAr~WKKd~LRs~gV~ViEYe~--DY~~AVeeGRk~a~~DP 231 (443)
T COG3048 154 FKDFFSRYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARAWKKDKLRSHGVTVVEYEQ--DYGVAVEEGRKEAESDP 231 (443)
T ss_pred HHHHHHhheEeecccCccceehhhhhhhhcceEEEEecchHHHHHHHHHHhcCceEEEecc--hhhHHHHHhhhhhccCC
Confidence 4568899999999999999999999999999999999999999999999999984 78899999999999988
Q ss_pred CeEEeCCCCCCcchHhHHhchHHHHHhhhC--------CCCCEEEEecCCchhHHHHHHHHHhhCC-CcEEEEEecCCCc
Q 020528 144 NSYVLQQFENPANPKIHYETTGPEIWKGTG--------GKIDALVSGIGTGGTVTGAGKYLKEHNP-EIKLYGVEPVESA 214 (325)
Q Consensus 144 ~~~~~~~~~n~~~~~~g~~t~~~Ei~~ql~--------~~~D~iv~pvG~Gg~~aGi~~~~k~~~~-~~~vigV~~~~~~ 214 (325)
.+|+++. +|+.+...||...+..+-.|+. ..|-.|..|+|-||...|++.++|..+. ++.++-+||..+|
T Consensus 232 ~c~FiDD-E~S~~LFLGYaVAa~Rlk~Q~d~~gi~vd~ehPLfVylPCGVGGgPGGVafGLKl~fgd~VhcfFaEPthsP 310 (443)
T COG3048 232 NCFFIDD-ENSRTLFLGYAVAAQRLKKQFDEQGIVVDAEHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSP 310 (443)
T ss_pred ceEEecc-cchhhhhhhHHHHHHHHHHHHHhcCceecCCCceEEEeecCCCCCcchhhhhhHhhhcCceEEEEecCCCCh
Confidence 8999987 4555557899999999999873 2466899999999999999999999874 6999999999999
Q ss_pred cccCC---------------CCCCcccccCCCCCCccccc----cccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHH
Q 020528 215 VLSGG---------------KPGPHKIQGIGAGFIPGVLD----VNLLDETVQISSEEAIETAKLLALKEGLLVGISSGA 275 (325)
Q Consensus 215 ~~~~~---------------~~~~~~~~gl~~~~~~~~~~----~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~ 275 (325)
+|.-| ....+.++|++++. |+-+. ..++|+.+.|+|+..++...+|++.||+.+|||+-+
T Consensus 311 cMlLGv~tGlHe~ISVqdiGidn~TaADGLAVgR-pSgfVgr~me~lL~G~~TvdD~~ly~lL~~L~~~e~~rlEPSalA 389 (443)
T COG3048 311 CMLLGVYTGLHEQISVQDIGIDNLTAADGLAVGR-PSGFVGRAMERLLDGYYTVDDQTLYDLLGWLAQEEGIRLEPSALA 389 (443)
T ss_pred HHHHhhhhccccceeeEeecccccccccceeecC-ccchHHHHHHHHhCCcEEechHHHHHHHHHHHHhcCcccCchhhh
Confidence 98532 22345668888776 44433 457899999999999999999999999999999888
Q ss_pred HHHHHHHHHhcC------------CCCCCEEEEEeCCCCCC
Q 020528 276 ATAAAIQIAKRP------------ENAGKLIVVVFPSFGER 304 (325)
Q Consensus 276 a~aa~~~~~~~~------------~~~~~~vv~i~t~~g~~ 304 (325)
+.++..++.+.. .....+-++..|+||-.
T Consensus 390 gm~Gp~~~~~~~~g~~~~~~~~~~~~~natHlvWaTGG~MV 430 (443)
T COG3048 390 GMAGPQRVCASVEGYRYRHGFSAEQLNNATHLVWATGGGMV 430 (443)
T ss_pred cccCcceeeechhHHHHHhhchhhhhcCeeEEEEecCCCcC
Confidence 777766543211 12344667888887754
|
|
| >KOG2616 consensus Pyridoxalphosphate-dependent enzyme/predicted threonine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.007 Score=51.58 Aligned_cols=63 Identities=11% Similarity=0.167 Sum_probs=53.5
Q ss_pred EEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchh
Q 020528 246 TVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSV 309 (325)
Q Consensus 246 ~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~ 309 (325)
...||++|+.+++...|+..+++++|++|.|+-...+...+.. +.-.++++.|.+..||-+.+
T Consensus 148 se~vS~ee~~~ti~k~yes~~YiLdPHTAVav~~~~r~idkt~-ps~~~i~lstAh~aKFa~AV 210 (266)
T KOG2616|consen 148 SERVSNEETTQTIKKIYESNHYILDPHTAVAVNYHYRQIDKTQ-PSIPYICLSTAHPAKFAEAV 210 (266)
T ss_pred hhhcCcHHHHHHHHHHhccCCeeecCchHHHHHHHHHHHhccC-CCCceEEecccChhhhhHHH
Confidence 4578999999999999999999999999999998888777653 45678888888888876653
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=87.39 E-value=11 Score=32.53 Aligned_cols=50 Identities=28% Similarity=0.401 Sum_probs=41.9
Q ss_pred EEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 020528 73 LIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 123 (325)
Q Consensus 73 vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 123 (325)
+|+..+|+.|..++.+....+.+++++++.. +....+.++..|++++..+
T Consensus 2 ~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~-~~~~~~~l~~~g~~vv~~d 51 (233)
T PF05368_consen 2 LVTGATGNQGRSVVRALLSAGFSVRALVRDP-SSDRAQQLQALGAEVVEAD 51 (233)
T ss_dssp EEETTTSHHHHHHHHHHHHTTGCEEEEESSS-HHHHHHHHHHTTTEEEES-
T ss_pred EEECCccHHHHHHHHHHHhCCCCcEEEEecc-chhhhhhhhcccceEeecc
Confidence 5778899999999999888999999998876 5566778889999998665
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=86.56 E-value=6 Score=35.86 Aligned_cols=86 Identities=24% Similarity=0.284 Sum_probs=60.9
Q ss_pred eEEEEeCCCCC-----CCChhhHHHHHHHHHHHHhCCCCCCCeEEE-ecCCChhHHHHHHHHHHcCCeEEEEecCCCC-H
Q 020528 34 RIAAKLEMMEP-----CSSVKDRIGYSMIADAEEKGLIRPGESVLI-EPTSGNTGIGLAFMAAAKGYRLIITMPASMS-L 106 (325)
Q Consensus 34 ~l~~K~E~~np-----tGS~K~R~a~~~~~~a~~~g~~~~g~~~vv-~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~ 106 (325)
+-++|.+..-| |-|.---.|+.++.+-.+.. +|.. |+ -++.+--|.++--.|+.+||+.+=+++.... .
T Consensus 124 ~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~---~GD~-vIQNganS~VG~~ViQlaka~GiktinvVRdR~~ie 199 (354)
T KOG0025|consen 124 SDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLN---KGDS-VIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNIE 199 (354)
T ss_pred cceEEcCCcCChhhhheeccCchHHHHHHHHHHhcC---CCCe-eeecCcccHHHHHHHHHHHHhCcceEEEeecCccHH
Confidence 46777777555 55555557888888877643 3533 44 2333445677777899999999988887644 5
Q ss_pred HHHHHHHHcCCEEEEeC
Q 020528 107 ERRMVLLAFGAELVLTD 123 (325)
Q Consensus 107 ~~~~~~~~~Ga~v~~~~ 123 (325)
+..++++.+||+-++.+
T Consensus 200 el~~~Lk~lGA~~ViTe 216 (354)
T KOG0025|consen 200 ELKKQLKSLGATEVITE 216 (354)
T ss_pred HHHHHHHHcCCceEecH
Confidence 55778999999998887
|
|
| >PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli | Back alignment and domain information |
|---|
Probab=85.22 E-value=8.1 Score=32.13 Aligned_cols=120 Identities=13% Similarity=0.097 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHcCCeE-EEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHh
Q 020528 81 TGIGLAFMAAAKGYRL-IITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKI 159 (325)
Q Consensus 81 ~g~alA~~a~~~g~~~-~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~ 159 (325)
-|..+..+++.+|.++ .-+.+.+.-..-+..+...|-+|.+++++ .....+.+..+.+..++.-.+..+ ++.....
T Consensus 12 DG~~i~~~~~~~g~~~~~rv~g~dl~~~l~~~~~~~~~~ifllG~~--~~~~~~~~~~l~~~yP~l~ivg~~-~g~f~~~ 88 (172)
T PF03808_consen 12 DGMPIVWAARLLGRPLPERVTGSDLFPDLLRRAEQRGKRIFLLGGS--EEVLEKAAANLRRRYPGLRIVGYH-HGYFDEE 88 (172)
T ss_pred CCHHHHHHHHHcCCCCCcccCHHHHHHHHHHHHHHcCCeEEEEeCC--HHHHHHHHHHHHHHCCCeEEEEec-CCCCChh
Confidence 3567888999999887 33333334455666777889999999964 344445555666666654333222 2211111
Q ss_pred HHhchHHHHHhhhC-CCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEE
Q 020528 160 HYETTGPEIWKGTG-GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGV 208 (325)
Q Consensus 160 g~~t~~~Ei~~ql~-~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV 208 (325)
-. .+|++++. ..||.|+++.|+.--=.=+. ..+...+..-+++|
T Consensus 89 ~~----~~i~~~I~~~~pdiv~vglG~PkQE~~~~-~~~~~l~~~v~i~v 133 (172)
T PF03808_consen 89 EE----EAIINRINASGPDIVFVGLGAPKQERWIA-RHRQRLPAGVIIGV 133 (172)
T ss_pred hH----HHHHHHHHHcCCCEEEEECCCCHHHHHHH-HHHHHCCCCEEEEE
Confidence 22 23444432 46999999999875443223 33333444444444
|
Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process |
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=84.63 E-value=14 Score=34.27 Aligned_cols=59 Identities=24% Similarity=0.364 Sum_probs=41.4
Q ss_pred HHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q 020528 60 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 122 (325)
Q Consensus 60 a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~ 122 (325)
+..+..+.+|.+.+|... |..|.+++..++.+|.+++++ +.++.+++.++.+|++.++.
T Consensus 158 a~~~~~~~~g~~VlV~G~-G~vG~~a~~~a~~~G~~vi~~---~~~~~~~~~~~~~Ga~~~i~ 216 (349)
T TIGR03201 158 AAVQAGLKKGDLVIVIGA-GGVGGYMVQTAKAMGAAVVAI---DIDPEKLEMMKGFGADLTLN 216 (349)
T ss_pred HHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEE---cCCHHHHHHHHHhCCceEec
Confidence 334455677766666555 999999999999999974433 33566788888899865443
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=84.32 E-value=17 Score=36.90 Aligned_cols=96 Identities=18% Similarity=0.284 Sum_probs=61.3
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQ 150 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 150 (325)
..++.++.|..|+.+|..-...|++++++ +.++.+++.++.+|.+++.=|..
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvI---D~d~~~v~~~~~~g~~v~~GDat------------------------- 452 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVL---DHDPDHIETLRKFGMKVFYGDAT------------------------- 452 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEE---ECCHHHHHHHHhcCCeEEEEeCC-------------------------
Confidence 45788999999999999888889988776 33566666667666665444431
Q ss_pred CCCCcchHhHHhchHHHHHhhhC-CCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEE
Q 020528 151 FENPANPKIHYETTGPEIWKGTG-GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGV 208 (325)
Q Consensus 151 ~~n~~~~~~g~~t~~~Ei~~ql~-~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV 208 (325)
. .|++++.+ .+.|.+|+++..--.-.-+....|+.+|+.++++-
T Consensus 453 -----~---------~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~~p~~~iiaR 497 (621)
T PRK03562 453 -----R---------MDLLESAGAAKAEVLINAIDDPQTSLQLVELVKEHFPHLQIIAR 497 (621)
T ss_pred -----C---------HHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 1 12233221 24566676666644444456666777777776653
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=84.28 E-value=18 Score=36.56 Aligned_cols=97 Identities=14% Similarity=0.211 Sum_probs=65.5
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQ 150 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 150 (325)
.+++.++.|..|+.+|..-...|++++++= .++.+++.++.+|.+++.=+.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID---~d~~~v~~~~~~g~~v~~GDa-------------------------- 451 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLE---RDISAVNLMRKYGYKVYYGDA-------------------------- 451 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEE---CCHHHHHHHHhCCCeEEEeeC--------------------------
Confidence 357778899999999988888888877662 245556666665554433332
Q ss_pred CCCCcchHhHHhchHHHHHhhhC-CCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEe
Q 020528 151 FENPANPKIHYETTGPEIWKGTG-GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVE 209 (325)
Q Consensus 151 ~~n~~~~~~g~~t~~~Ei~~ql~-~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~ 209 (325)
.+ .|++++.+ .+.|.+|++++.--.-.-+....|+.+|+.+|++-.
T Consensus 452 ----t~---------~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaRa 498 (601)
T PRK03659 452 ----TQ---------LELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHFPHLHILARA 498 (601)
T ss_pred ----CC---------HHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 11 13344332 356888888888666666777888889999988764
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=84.25 E-value=8 Score=35.90 Aligned_cols=52 Identities=13% Similarity=0.218 Sum_probs=40.2
Q ss_pred CCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020528 67 RPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119 (325)
Q Consensus 67 ~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 119 (325)
.+|.+.+|. +.|..|...+..++.+|.+++++.+...++.|++.++.+|++.
T Consensus 171 ~~g~~vlI~-G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~ 222 (355)
T cd08230 171 WNPRRALVL-GAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATY 222 (355)
T ss_pred CCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Confidence 456566665 5689999999999999998666655445678888999999985
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=83.99 E-value=17 Score=32.87 Aligned_cols=57 Identities=25% Similarity=0.299 Sum_probs=42.6
Q ss_pred HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 020528 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 121 (325)
+...+.+|.+.+|...+|..|.++...|+.+|.+++++. .+..+...++.+|++-++
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~---~s~~~~~~l~~~Ga~~vi 193 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCA---GSDDKVAWLKELGFDAVF 193 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHcCCCEEE
Confidence 445567787777877789999999999999999855443 356678888888885433
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=83.37 E-value=14 Score=34.14 Aligned_cols=58 Identities=28% Similarity=0.473 Sum_probs=42.8
Q ss_pred HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q 020528 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 122 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~ 122 (325)
+.+.+++|.+.+|.+.+|.-|..+.-.|+.+|...++. .. +..|.+.++.+||+.+..
T Consensus 136 ~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~-~~--s~~k~~~~~~lGAd~vi~ 193 (326)
T COG0604 136 DRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAV-VS--SSEKLELLKELGADHVIN 193 (326)
T ss_pred HhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEE-ec--CHHHHHHHHhcCCCEEEc
Confidence 34667888899999999999999988899999833333 32 346666888888865544
|
|
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=83.01 E-value=18 Score=34.41 Aligned_cols=56 Identities=25% Similarity=0.337 Sum_probs=41.7
Q ss_pred HHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020528 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119 (325)
Q Consensus 61 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 119 (325)
.++..+.+|.+.+| ..+|..|.+++..|+.+|.+.+++.. ....++...+.+|++.
T Consensus 178 ~~~~~~~~g~~VlV-~G~G~iG~~aiqlAk~~Ga~~vi~~d--~~~~r~~~a~~~Ga~~ 233 (393)
T TIGR02819 178 AVTAGVGPGSTVYI-AGAGPVGLAAAASAQLLGAAVVIVGD--LNPARLAQARSFGCET 233 (393)
T ss_pred HHhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCceEEEeC--CCHHHHHHHHHcCCeE
Confidence 34455677766666 66788999999999999998766433 3467888889999974
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=82.44 E-value=24 Score=35.18 Aligned_cols=97 Identities=23% Similarity=0.156 Sum_probs=60.9
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQ 150 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 150 (325)
.+++..+.|+.|+.+|..-+..|.+++++=. ++++.+.++.+|.+++.-+..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~---d~~~~~~~~~~g~~~i~GD~~------------------------- 469 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIET---SRTRVDELRERGIRAVLGNAA------------------------- 469 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEEC---CHHHHHHHHHCCCeEEEcCCC-------------------------
Confidence 4577889999999999888888888766622 345555555555554443321
Q ss_pred CCCCcchHhHHhchHHHHHhhhC-CCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEe
Q 020528 151 FENPANPKIHYETTGPEIWKGTG-GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVE 209 (325)
Q Consensus 151 ~~n~~~~~~g~~t~~~Ei~~ql~-~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~ 209 (325)
+ .|++++.+ .+.|.+++.++.-..-.-+....++.+|+.++++..
T Consensus 470 -----~---------~~~L~~a~i~~a~~viv~~~~~~~~~~iv~~~~~~~~~~~iiar~ 515 (558)
T PRK10669 470 -----N---------EEIMQLAHLDCARWLLLTIPNGYEAGEIVASAREKRPDIEIIARA 515 (558)
T ss_pred -----C---------HHHHHhcCccccCEEEEEcCChHHHHHHHHHHHHHCCCCeEEEEE
Confidence 1 12333322 356777777776554444555667778888888753
|
|
| >TIGR00670 asp_carb_tr aspartate carbamoyltransferase | Back alignment and domain information |
|---|
Probab=81.99 E-value=9.4 Score=34.96 Aligned_cols=61 Identities=25% Similarity=0.195 Sum_probs=44.2
Q ss_pred HhCCCCCCCeEEEecCC--ChhHHHHHHHHHHcCCeEEEEecCC--CCHHHHHHHHHcCCEEEEeC
Q 020528 62 EKGLIRPGESVLIEPTS--GNTGIGLAFMAAAKGYRLIITMPAS--MSLERRMVLLAFGAELVLTD 123 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ss--GN~g~alA~~a~~~g~~~~i~~p~~--~~~~~~~~~~~~Ga~v~~~~ 123 (325)
..|.++ |.+..+++-. +|.+.|+...++++|++++++.|+. .+...+..++..|+++..++
T Consensus 144 ~~g~l~-g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~ 208 (301)
T TIGR00670 144 EFGRLD-GLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETE 208 (301)
T ss_pred HhCCCC-CCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEEC
Confidence 346543 3243333333 6999999999999999999999997 35566677777899987775
|
Ornithine carbamoyltransferases are in the same superfamily and form an outgroup. |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=80.66 E-value=40 Score=33.33 Aligned_cols=50 Identities=18% Similarity=0.138 Sum_probs=40.3
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 123 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 123 (325)
.+|+..+.|..|.+.+..|+.+|-.++++ +..+.++++.+.+|++.+.++
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~---D~~~~rle~aeslGA~~v~i~ 215 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAF---DTRPEVAEQVESMGAEFLELD 215 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEE---eCCHHHHHHHHHcCCeEEEec
Confidence 45777889999999999999999853333 457888999999999966554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 325 | ||||
| 2isq_A | 320 | Crystal Structure Of O-Acetylserine Sulfhydrylase F | 1e-142 | ||
| 1z7w_A | 322 | Crystal Structure Of O-Acetylserine Sulfhydrylase F | 1e-142 | ||
| 1z7y_A | 322 | Crystal Structure Of The Arabidopsis Thaliana O-Ace | 1e-141 | ||
| 4aec_A | 430 | Crystal Structure Of The Arabidopsis Thaliana O-Ace | 1e-129 | ||
| 3vbe_A | 344 | Crystal Structure Of Beta-Cyanoalanine Synthase In | 1e-109 | ||
| 3vc3_A | 344 | Crystal Structure Of Beta-Cyanoalanine Synthase K95 | 1e-109 | ||
| 2q3d_A | 313 | 2.2 A Resolution Crystal Structure Of O-acetylserin | 4e-95 | ||
| 2q3b_A | 313 | 1.8 A Resolution Crystal Structure Of O-Acetylserin | 2e-94 | ||
| 3rr2_A | 314 | Structure Of A Cysteine Synthase (O-Acetylserine Su | 8e-92 | ||
| 4i1y_A | 314 | The Structure Of Cysteine Synthase From Mycobacteri | 1e-90 | ||
| 1oas_A | 322 | O-Acetylserine Sulfhydrylase From Salmonella Typhim | 1e-80 | ||
| 1d6s_A | 322 | Crystal Structure Of The K41a Mutant Of O-Acetylser | 5e-80 | ||
| 3t4p_A | 334 | Crystal Structure Of O-Acetyl Serine Sulfhydrylase | 7e-79 | ||
| 4air_A | 354 | Leishmania Major Cysteine Synthase Length = 354 | 1e-78 | ||
| 2egu_A | 308 | Crystal Structure Of O-Acetylserine Sulfhydrase Fro | 2e-74 | ||
| 1ve1_A | 304 | Crystal Structure Of T.Th. Hb8 O-Acetylserine Sulfh | 2e-71 | ||
| 1y7l_A | 316 | O-Acetylserine Sulfhydrylase Complex Length = 316 | 8e-69 | ||
| 3fca_A | 291 | Genetic Incorporation Of A Metal-Ion Chelating Amin | 3e-62 | ||
| 1o58_A | 303 | Crystal Structure Of O-Acetylserine Sulfhydrylase ( | 4e-62 | ||
| 3bm5_A | 338 | Crystal Structure Of O-Acetyl-Serine Sulfhydrylase | 1e-59 | ||
| 2pqm_A | 343 | Crystal Structure Of Cysteine Synthase (Oass) From | 1e-59 | ||
| 2bht_A | 303 | Crystal Structure Of O-Acetylserine Sulfhydrylase B | 5e-55 | ||
| 2bhs_A | 303 | Crystal Structure Of Cysteine Synthase B Length = 3 | 6e-55 | ||
| 2jc3_A | 303 | Structure Of O-acetylserine Sulfhydrylase B From Sa | 2e-54 | ||
| 2v03_A | 303 | High Resolution Structure And Catalysis Of An O- Ac | 1e-53 | ||
| 1m54_A | 363 | Cystathionine-Beta Synthase: Reduced Vicinal Thiols | 2e-49 | ||
| 1jbq_A | 435 | Structure Of Human Cystathionine Beta-Synthase: A U | 6e-49 | ||
| 3pc2_A | 527 | Full Length Structure Of Cystathionine Beta-Synthas | 1e-42 | ||
| 3dwg_A | 325 | Crystal Structure Of A Sulfur Carrier Protein Compl | 7e-39 | ||
| 3dwi_A | 323 | Crystal Structure Of Mycobacterium Tuberculosis Cys | 2e-38 | ||
| 3dki_A | 326 | 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobac | 3e-38 | ||
| 1wkv_A | 389 | Crystal Structure Of O-Phosphoserine Sulfhydrylase | 5e-11 | ||
| 3vsc_A | 389 | Crystal Structure Of The K127a Mutant Of O-Phosphos | 2e-10 | ||
| 1tdj_A | 514 | Threonine Deaminase (Biosynthetic) From E. Coli Len | 2e-04 |
| >pdb|2ISQ|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From Arabidopsis Thaliana In Complex With C-Terminal Peptide From Arabidopsis Serine Acetyltransferase Length = 320 | Back alignment and structure |
|
| >pdb|1Z7W|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From Arabidopsis Thaliana Length = 322 | Back alignment and structure |
|
| >pdb|1Z7Y|A Chain A, Crystal Structure Of The Arabidopsis Thaliana O-Acetylserine Sulfhydrylase K46a Mutant Length = 322 | Back alignment and structure |
|
| >pdb|4AEC|A Chain A, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl- Serine-(Thiol)-Lyase C Length = 430 | Back alignment and structure |
|
| >pdb|3VBE|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean Length = 344 | Back alignment and structure |
|
| >pdb|3VC3|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase K95a Mutant In Soybean Length = 344 | Back alignment and structure |
|
| >pdb|2Q3D|A Chain A, 2.2 A Resolution Crystal Structure Of O-acetylserine Sulfhydrylase (oass) From Mycobacterium Tuberculosis In Complex With The Reaction Intermediate Alpha-aminoacrylate Length = 313 | Back alignment and structure |
|
| >pdb|2Q3B|A Chain A, 1.8 A Resolution Crystal Structure Of O-Acetylserine Sulfhydrylase (Oass) Holoenzyme From Mycobacterium Tuberculosis Length = 313 | Back alignment and structure |
|
| >pdb|3RR2|A Chain A, Structure Of A Cysteine Synthase (O-Acetylserine Sulfhydrylase (Oass)) From Mycobacterium Marinum Atcc Baa-535 M Length = 314 | Back alignment and structure |
|
| >pdb|4I1Y|A Chain A, The Structure Of Cysteine Synthase From Mycobacterium Ulcerans Agy99 Length = 314 | Back alignment and structure |
|
| >pdb|1OAS|A Chain A, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium Length = 322 | Back alignment and structure |
|
| >pdb|1D6S|A Chain A, Crystal Structure Of The K41a Mutant Of O-Acetylserine Sulfhydrylase Complexed In External Aldimine Linkage With Methionine Length = 322 | Back alignment and structure |
|
| >pdb|3T4P|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From Leishmania Donovani In Complex With Designed Tetrapeptide Length = 334 | Back alignment and structure |
|
| >pdb|4AIR|A Chain A, Leishmania Major Cysteine Synthase Length = 354 | Back alignment and structure |
|
| >pdb|2EGU|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrase From Geobacillus Kaustophilus Hta426 Length = 308 | Back alignment and structure |
|
| >pdb|1VE1|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine Sulfhydrylase Length = 304 | Back alignment and structure |
|
| >pdb|1Y7L|A Chain A, O-Acetylserine Sulfhydrylase Complex Length = 316 | Back alignment and structure |
|
| >pdb|3FCA|A Chain A, Genetic Incorporation Of A Metal-Ion Chelating Amino Acid Into Proteins As Biophysical Probe Length = 291 | Back alignment and structure |
|
| >pdb|1O58|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665) From Thermotoga Maritima At 1.80 A Resolution Length = 303 | Back alignment and structure |
|
| >pdb|3BM5|A Chain A, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From Entamoeba Histolytica In Complex With Cysteine Length = 338 | Back alignment and structure |
|
| >pdb|2PQM|A Chain A, Crystal Structure Of Cysteine Synthase (Oass) From Entamoeba Histolytica At 1.86 A Resolution Length = 343 | Back alignment and structure |
|
| >pdb|2BHT|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase B Length = 303 | Back alignment and structure |
|
| >pdb|2BHS|A Chain A, Crystal Structure Of Cysteine Synthase B Length = 303 | Back alignment and structure |
|
| >pdb|2JC3|A Chain A, Structure Of O-acetylserine Sulfhydrylase B From Salmonella Typhimurium Length = 303 | Back alignment and structure |
|
| >pdb|2V03|A Chain A, High Resolution Structure And Catalysis Of An O- Acetylserine Sulfhydrylase Length = 303 | Back alignment and structure |
|
| >pdb|1M54|A Chain A, Cystathionine-Beta Synthase: Reduced Vicinal Thiols Length = 363 | Back alignment and structure |
|
| >pdb|1JBQ|A Chain A, Structure Of Human Cystathionine Beta-Synthase: A Unique Pyridoxal 5'- Phosphate Dependent Hemeprotein Length = 435 | Back alignment and structure |
|
| >pdb|3PC2|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From Drosophila Length = 527 | Back alignment and structure |
|
| >pdb|3DWG|A Chain A, Crystal Structure Of A Sulfur Carrier Protein Complex Found In The Cysteine Biosynthetic Pathway Of Mycobacterium Tuberculosis Length = 325 | Back alignment and structure |
|
| >pdb|3DWI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cysm, The Cysteine Synthase B Length = 323 | Back alignment and structure |
|
| >pdb|3DKI|A Chain A, 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobacterium Tuberculosis An O-Phosphoserine Dependent Cysteine Synthase Length = 326 | Back alignment and structure |
|
| >pdb|1WKV|A Chain A, Crystal Structure Of O-Phosphoserine Sulfhydrylase Length = 389 | Back alignment and structure |
|
| >pdb|3VSC|A Chain A, Crystal Structure Of The K127a Mutant Of O-Phosphoserine Sulfhydrylase Complexed With External Schiff Base Of Pyridoxal 5'-Phosphate With O- Phospho-L-Serine Length = 389 | Back alignment and structure |
|
| >pdb|1TDJ|A Chain A, Threonine Deaminase (Biosynthetic) From E. Coli Length = 514 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 325 | |||
| 1z7w_A | 322 | Cysteine synthase; transferase; HET: PLP; 2.20A {A | 0.0 | |
| 4aec_A | 430 | Cysteine synthase, mitochondrial; lyase, cysteine | 0.0 | |
| 3tbh_A | 334 | O-acetyl serine sulfhydrylase; cysteine synthase, | 0.0 | |
| 2q3b_A | 313 | Cysteine synthase A; pyridoxal-5'-phosphate, sulph | 0.0 | |
| 1y7l_A | 316 | O-acetylserine sulfhydrylase, O-acetylserine (thio | 0.0 | |
| 2pqm_A | 343 | Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.8 | 0.0 | |
| 1ve1_A | 304 | O-acetylserine sulfhydrylase; PLP, transferase, ri | 0.0 | |
| 2egu_A | 308 | Cysteine synthase; O-acetylserine sulfhydrase, str | 0.0 | |
| 1o58_A | 303 | O-acetylserine sulfhydrylase; TM0665, structural g | 0.0 | |
| 3dwg_A | 325 | Cysteine synthase B; sulfur carrier protein comple | 0.0 | |
| 2v03_A | 303 | Cysteine synthase B; pyridoxal phosphate, cysteine | 0.0 | |
| 1wkv_A | 389 | Cysteine synthase; homodimer, open alpha/beta fold | 1e-170 | |
| 3pc3_A | 527 | CG1753, isoform A; CBS, synthase, PLP, heme, amino | 1e-169 | |
| 1jbq_A | 435 | B, cystathionine beta-synthase, serine sulfhydrase | 1e-168 | |
| 2d1f_A | 360 | Threonine synthase; amino acid synthesis, pyridoxa | 1e-21 | |
| 2zsj_A | 352 | Threonine synthase; PLP dependent enzyme, lyase; H | 4e-20 | |
| 3aey_A | 351 | Threonine synthase; PLP, pyridoxal phosphate, lyas | 1e-19 | |
| 1e5x_A | 486 | Threonine synthase; threonine biosynthesis, PLP en | 3e-19 | |
| 3ss7_X | 442 | D-serine dehydratase; type II fold, ALFA,beta-elim | 1e-17 | |
| 4d9i_A | 398 | Diaminopropionate ammonia-lyase; fold type II PLP- | 1e-15 | |
| 1p5j_A | 372 | L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo | 8e-14 | |
| 1v71_A | 323 | Serine racemase, hypothetical protein C320.14 in c | 9e-14 | |
| 1ve5_A | 311 | Threonine deaminase; riken structural genomics/Pro | 2e-13 | |
| 3l6b_A | 346 | Serine racemase; pyridoxal phosphate, PLP, isomera | 1e-12 | |
| 2rkb_A | 318 | Serine dehydratase-like; PLP bound enzyme, enzyme | 1e-12 | |
| 2gn0_A | 342 | Threonine dehydratase catabolic; TDCB, biodegradat | 1e-12 | |
| 1tdj_A | 514 | Biosynthetic threonine deaminase; allostery, coope | 4e-12 | |
| 3iau_A | 366 | Threonine deaminase; pyridoxal phosphate, amino-ac | 2e-11 | |
| 1tzj_A | 338 | ACC deaminase, 1-aminocyclopropane-1-carboxylate d | 1e-06 |
| >1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A* Length = 322 | Back alignment and structure |
|---|
Score = 628 bits (1622), Expect = 0.0
Identities = 258/317 (81%), Positives = 292/317 (92%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
IAKDVTELIG TPLVYLN + +GCV R+AAKLEMMEPCSSVKDRIG+SMI+DAE+KGLI+
Sbjct: 5 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIK 64
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
PGESVLIEPTSGNTG+GLAF AAAKGY+LIITMPASMS ERR++LLAFG ELVLTDPA+G
Sbjct: 65 PGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKG 124
Query: 128 MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGG 187
MKGA+ KAEEI KTPN Y+LQQFENPANPKIHYETTGPEIWKGTGGKID VSGIGTGG
Sbjct: 125 MKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGG 184
Query: 188 TVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETV 247
T+TGAGKYLKE N +KLYGVEPVESA+LSGGKPGPHKIQGIGAGFIP VL+V+L+DE V
Sbjct: 185 TITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVV 244
Query: 248 QISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLS 307
Q+SS+E+I+ A+ LALKEGLLVGISSGAA AAAI++A+RPENAGKL V +FPSFGERYLS
Sbjct: 245 QVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENAGKLFVAIFPSFGERYLS 304
Query: 308 SVLFESVKKEAESMVFE 324
+VLF++ +KEAE+M FE
Sbjct: 305 TVLFDATRKEAEAMTFE 321
|
| >4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana} Length = 430 | Back alignment and structure |
|---|
Score = 628 bits (1621), Expect = 0.0
Identities = 236/317 (74%), Positives = 278/317 (87%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
IA +V++LIGKTP+VYLN I GCVA IAAKLE+MEPC SVKDRIGYSM+ DAE+KG I
Sbjct: 113 IADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFIS 172
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
PG+SVL+EPTSGNTGIGLAF+AA++GYRLI+TMPASMS+ERR++L AFGAELVLTDPA+G
Sbjct: 173 PGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKG 232
Query: 128 MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGG 187
M GAVQKAEEI TP++Y+LQQF+NPANPKIHYETTGPEIW T GK+D V+GIGTGG
Sbjct: 233 MTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGG 292
Query: 188 TVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETV 247
T+TG G+++KE NP+ ++ GVEP ES +LSGGKPGPHKIQGIGAGFIP LD ++DE +
Sbjct: 293 TITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIPKNLDQKIMDEVI 352
Query: 248 QISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLS 307
ISSEEAIETAK LALKEGL+VGISSGAA AAAI++AKRPENAGKLI VVFPSFGERYLS
Sbjct: 353 AISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPENAGKLIAVVFPSFGERYLS 412
Query: 308 SVLFESVKKEAESMVFE 324
+ LF+S+++E E M E
Sbjct: 413 TPLFQSIREEVEKMQPE 429
|
| >3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3t4p_A* 3spx_A* 4air_A* Length = 334 | Back alignment and structure |
|---|
Score = 620 bits (1602), Expect = 0.0
Identities = 158/319 (49%), Positives = 224/319 (70%), Gaps = 1/319 (0%)
Query: 3 EEKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEE 62
++ +A+ + +LIG+TP +YLN++ + A++ K+E P +SVKDR+G+++ AE+
Sbjct: 6 DKSKNVAQSIDQLIGQTPALYLNKL-NNTKAKVVLKMECENPMASVKDRLGFAIYDKAEK 64
Query: 63 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 122
+G + PG+S+++E +SGNTG+ LA + A +GY++IITMP SMSLERR +L FGAE++LT
Sbjct: 65 EGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILT 124
Query: 123 DPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSG 182
A GMKGAV A++I PN+ + QF N IH ETTGPEIW+ T +D ++G
Sbjct: 125 PAALGMKGAVAMAKKIVAANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAG 184
Query: 183 IGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNL 242
+GTGGT+TG + LK+ ++ VEP ES VLSGGKPGPHKIQGIG GF+P VLD +L
Sbjct: 185 VGTGGTLTGVARALKKMGSHARIVAVEPTESPVLSGGKPGPHKIQGIGPGFVPDVLDRSL 244
Query: 243 LDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFG 302
+DE + ++ ++AIETA L +G+ G S GA AA++IA+RPE GK IV V PSFG
Sbjct: 245 IDEVLCVAGDDAIETALKLTRSDGVFCGFSGGANVYAALKIAERPEMEGKTIVTVIPSFG 304
Query: 303 ERYLSSVLFESVKKEAESM 321
ERYLS+ L+ SV+ E S+
Sbjct: 305 ERYLSTTLYRSVRDEVSSL 323
|
| >2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A Length = 313 | Back alignment and structure |
|---|
Score = 608 bits (1570), Expect = 0.0
Identities = 184/307 (59%), Positives = 234/307 (76%), Gaps = 1/307 (0%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
IA+D+T+LIG+TPLV L R+ DG VA I AKLE P +SVKDRIG +M+ AE+ GLI+
Sbjct: 6 IAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLIK 65
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
P ++++EPTSGNTGI LA + AA+GYR ++TMP +MSLERRM+L A+GAEL+LT A G
Sbjct: 66 PD-TIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGADG 124
Query: 128 MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGG 187
M GA+ KAEE+ +V QQFENPANP IH TT E+W+ T GK+D +V+G+GTGG
Sbjct: 125 MSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGTGG 184
Query: 188 TVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETV 247
T+TG + +KE P + VEP S VLSGG+ GPH IQGIGAGF+P VLD +L+DE +
Sbjct: 185 TITGVAQVIKERKPSARFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDQDLVDEII 244
Query: 248 QISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLS 307
+ +E+A+ A+ LA +EGLLVGISSGAAT AA+Q+A+RPENAGKLIVVV P FGERYLS
Sbjct: 245 TVGNEDALNVARRLAREEGLLVGISSGAATVAALQVARRPENAGKLIVVVLPDFGERYLS 304
Query: 308 SVLFESV 314
+ LF V
Sbjct: 305 TPLFADV 311
|
| >1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A* Length = 316 | Back alignment and structure |
|---|
Score = 584 bits (1509), Expect = 0.0
Identities = 165/316 (52%), Positives = 217/316 (68%), Gaps = 11/316 (3%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
I D + IG TPLV L G + K+E P SVK RIG +M+ AE+ G +
Sbjct: 3 IYADNSYSIGNTPLVRLKHF--GHNGNVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTLT 60
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
G +++ TSGNTGI LA++AAA+GY++ +TMP +MSLER+ +L G LVLT+ A+G
Sbjct: 61 KG-KEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKG 119
Query: 128 MKGAVQKAEEIRDKTPNSYV-LQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTG 186
MKGA+ KAEEI P+ YV L+QFENPANP+IH ETTGPEIWK T GK+D +V+G+GTG
Sbjct: 120 MKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGTG 179
Query: 187 GTVTGAGKYLK-EHNPEIKLYGVEPVESAVLSGG------KPGPHKIQGIGAGFIPGVLD 239
G++TG + +K + +I VEPVES V+S KPGPHKIQGIGAGFIP LD
Sbjct: 180 GSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEEVKPGPHKIQGIGAGFIPKNLD 239
Query: 240 VNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFP 299
++++D + S+ A+ TA+ L +EG+L GISSGAA AAA ++AK PE A KLIVV+ P
Sbjct: 240 LSIIDRVETVDSDTALATARRLMAEEGILAGISSGAAVAAADRLAKLPEFADKLIVVILP 299
Query: 300 SFGERYLSSVLFESVK 315
S ERYLS+ LFE ++
Sbjct: 300 SASERYLSTALFEGIE 315
|
| >2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A* Length = 343 | Back alignment and structure |
|---|
Score = 584 bits (1507), Expect = 0.0
Identities = 142/326 (43%), Positives = 206/326 (63%), Gaps = 8/326 (2%)
Query: 1 MVEEKSVIAKDVTELIGKTPLVYLNRIVDGCV----ARIAAKLEMMEPCSSVKDRIGYSM 56
+ + I ++ E IG TPLV L+ + + RI KLE P SSVKDR+G+++
Sbjct: 6 ISSPRKRIYHNILETIGGTPLVELHGVTEHPRIKKGTRILVKLEYFNPMSSVKDRVGFNI 65
Query: 57 IADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFG 116
+ A + G ++PG +IE TSGNTGI L A GYR+ I MP++MS+ER+M++ AFG
Sbjct: 66 VYQAIKDGRLKPG-MEIIESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFG 124
Query: 117 AELVLTDPARGMKGAVQKAEEIRDKTPNSYV-LQQFENPANPKIHYETTGPEIWKGTGGK 175
AEL+LT+ +GM GA+++ ++ + P Y QF NP N H+ T EIW+ T G+
Sbjct: 125 AELILTEGKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHH-YTANEIWEDTDGE 183
Query: 176 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 235
+D +VS +GT GTV G + LKE IK+ VEP ESAVL G GPH IQGIGAGFIP
Sbjct: 184 VDIVVSAVGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKGPHGIQGIGAGFIP 243
Query: 236 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 295
+ +DE + I +++A + A+ + +G++ G+SSGAA A ++ A++PEN GK IV
Sbjct: 244 DIYKKEFVDEIIPIKTQDAWKMARAVVKYDGIMCGMSSGAAILAGLKEAEKPENEGKTIV 303
Query: 296 VVFPSFGERYLSSVLFESVKKEAESM 321
++ PS GERYLS+ L++ +K E +
Sbjct: 304 IIVPSCGERYLSTDLYK-IKDEGTKI 328
|
| >1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A* Length = 304 | Back alignment and structure |
|---|
Score = 581 bits (1500), Expect = 0.0
Identities = 157/302 (51%), Positives = 211/302 (69%), Gaps = 3/302 (0%)
Query: 12 VTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPG-E 70
V IGKTP+V L ++V+ +A + KLE + P S+KDR + MI DAEE+G++RPG
Sbjct: 3 VEGAIGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSG 62
Query: 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKG 130
V++EPTSGNTGIGLA +AA++GYRLI+TMPA MS ER+ VL AFGAELVLTDP R M
Sbjct: 63 QVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLA 122
Query: 131 AVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVT 190
A ++A ++ + +++ QF+NPAN + HYETTGPE+++ G+IDA V G GTGGT+T
Sbjct: 123 AREEALRLK-EELGAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTIT 181
Query: 191 GAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQIS 250
G G+YLKE P +K+ VEP S VLSGGK G H QG+G GFIP LD++LLD +Q+
Sbjct: 182 GVGRYLKERIPHVKVIAVEPARSNVLSGGKMGQHGFQGMGPGFIPENLDLSLLDGVIQVW 241
Query: 251 SEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVL 310
E+A A+ LA +EGL +G+SSG AA+Q+A R GK + + P G +YLS+ L
Sbjct: 242 EEDAFPLARRLAREEGLFLGMSSGGIVWAALQVA-RELGPGKRVACISPDGGWKYLSTPL 300
Query: 311 FE 312
+
Sbjct: 301 YA 302
|
| >2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus} Length = 308 | Back alignment and structure |
|---|
Score = 570 bits (1472), Expect = 0.0
Identities = 170/305 (55%), Positives = 223/305 (73%), Gaps = 3/305 (0%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
+TELIG TP V LNRIVD A + KLE M P SSVKDRI +MI AE+ G ++
Sbjct: 4 TVNSITELIGDTPAVKLNRIVDEDSADVYLKLEFMNPGSSVKDRIALAMIEAAEKAGKLK 63
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
PG ++EPTSGNTGIGLA +AAAKGY+ ++ MP +MSLERR +L A+GAELVLT A+G
Sbjct: 64 PG-DTIVEPTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGAQG 122
Query: 128 MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGG 187
M+GA+ KAEE+ + ++ QQF+N ANP+IH TTG EI + G ++DA V+G+GTGG
Sbjct: 123 MRGAIAKAEELV-REHGYFMPQQFKNEANPEIHRLTTGKEIVEQMGDQLDAFVAGVGTGG 181
Query: 188 TVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETV 247
T+TGAGK L+E P IK+Y VEP +S VLSGGKPGPHKIQGIGAGF+P +LD ++ D +
Sbjct: 182 TITGAGKVLREAYPNIKIYAVEPADSPVLSGGKPGPHKIQGIGAGFVPDILDTSIYDGVI 241
Query: 248 QISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLS 307
+++EEA A+ A +EG+L GISSGAA AA+++AK GK ++ + PS GERYLS
Sbjct: 242 TVTTEEAFAAARRAAREEGILGGISSGAAIHAALKVAKE-LGKGKKVLAIIPSNGERYLS 300
Query: 308 SVLFE 312
+ L++
Sbjct: 301 TPLYQ 305
|
| >1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A* Length = 303 | Back alignment and structure |
|---|
Score = 548 bits (1414), Expect = 0.0
Identities = 153/303 (50%), Positives = 202/303 (66%), Gaps = 10/303 (3%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
+ LIG TP+V L+ I +RI KLE P SVKDR MI DAE++GL++
Sbjct: 10 HHHMMERLIGSTPIVRLDSID----SRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLK 65
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
G ++EPTSGN GI +A + A +G+R+I+TMP +MS+ERR VL GAELVLT G
Sbjct: 66 NG---IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELG 122
Query: 128 MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGG 187
MKGAV+KA EI + +++L QFENP N H TTGPEI K +IDA V+G+GTGG
Sbjct: 123 MKGAVEKALEIS-RETGAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGG 181
Query: 188 TVTGAGKYLKEH-NPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDET 246
T++G G+ LK +K+ VEP +S VLSGG+PG H IQGIGAGF+P +LD +++DE
Sbjct: 182 TISGVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIGAGFVPKILDRSVIDEV 241
Query: 247 VQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYL 306
+ + EEA E A+ LA KEGLLVGISSGA AAA+++A++ + +V V P ERYL
Sbjct: 242 ITVEDEEAYEMARYLAKKEGLLVGISSGANVAAALKVAQKLGPDAR-VVTVAPDHAERYL 300
Query: 307 SSV 309
S +
Sbjct: 301 SIL 303
|
| >3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3fgp_A* 3dki_A* 3dwi_A* Length = 325 | Back alignment and structure |
|---|
Score = 522 bits (1346), Expect = 0.0
Identities = 115/324 (35%), Positives = 172/324 (53%), Gaps = 18/324 (5%)
Query: 8 IAKDVTELIGKTPLVYLNRIV-------DGCVARIAAKLEMMEPCSSVKDRIGYSMIADA 60
+ + +G TPLV L R+ DG R+ AKLE P S+KDR MI A
Sbjct: 5 RYDSLLQALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQA 64
Query: 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120
E GL+RPG + ++EPTSGNTGI LA A KGYRLI MP + S+ERR +L +GA+++
Sbjct: 65 EADGLLRPG-ATILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQII 123
Query: 121 LTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALV 180
+ G AV A+E+ P+ +L Q+ NPAN HY TGPE+ +I V
Sbjct: 124 FSAAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PEITHFV 182
Query: 181 SGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDV 240
+G+GT GT+ G G++L+EH +K+ EP G + ++ + GF+P + D
Sbjct: 183 AGLGTTGTLMGTGRFLREHVANVKIVAAEPRYG-------EGVYALRNMDEGFVPELYDP 235
Query: 241 NLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGK--LIVVVF 298
+L + + +A+ + L EG+ GIS+GA AA+ + AG+ I +V
Sbjct: 236 EILTARYSVGAVDAVRRTRELVHTEGIFAGISTGAVLHAALGVGAGALAAGERADIALVV 295
Query: 299 PSFGERYLSSVLFESVKKEAESMV 322
G +YLS+ + +AE+ +
Sbjct: 296 ADAGWKYLSTGAYAGSLDDAETAL 319
|
| >2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A* Length = 303 | Back alignment and structure |
|---|
Score = 512 bits (1320), Expect = 0.0
Identities = 126/302 (41%), Positives = 186/302 (61%), Gaps = 11/302 (3%)
Query: 11 DVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGE 70
+ + IG TPLV L R+ + + KLE P SVKDR SMI +AE++G I+PG
Sbjct: 3 TLEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPG- 61
Query: 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKG 130
VLIE TSGNTGI LA +AA KGYR+ + MP +MS ERR + A+GAEL+L +GM+G
Sbjct: 62 DVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEG 121
Query: 131 AVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVT 190
A A E+ ++ +L QF NP NP HY TTGPEIW+ TGG+I VS +GT GT+T
Sbjct: 122 ARDLALEMANRGEG-KLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTIT 180
Query: 191 GAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQIS 250
G ++++E + + + G++P E + + G + P ++PG+ + +L+DE + I
Sbjct: 181 GVSRFMREQSKPVTIVGLQPEEGSSIPGIRRWPT-------EYLPGIFNASLVDEVLDIH 233
Query: 251 SEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVL 310
+A T + LA++EG+ G+SSG A A A+++A N ++V + G+RYLS+ +
Sbjct: 234 QRDAENTMRELAVREGIFCGVSSGGAVAGALRVAA--ANPDAVVVAIICDRGDRYLSTGV 291
Query: 311 FE 312
F
Sbjct: 292 FG 293
|
| >1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1 Length = 389 | Back alignment and structure |
|---|
Score = 476 bits (1226), Expect = e-170
Identities = 80/305 (26%), Positives = 137/305 (44%), Gaps = 17/305 (5%)
Query: 11 DVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCS-SVKDRIGYSMIADAEEKGLIRPG 69
D E TPLV + R+ KLE P S SVKDR +I+ + + G
Sbjct: 89 DFFERGKPTPLVRSRLQLPNG-VRVWLKLEWYNPFSLSVKDRPAVEIISRLSRR--VEKG 145
Query: 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMK 129
S++ + TS N G+ L+ +A GYR + +P + +++ GA++++ A
Sbjct: 146 -SLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAPSTV 204
Query: 130 GAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWK---GTGGKIDALVSGIGTG 186
+ + + K + QF N AN + H T EI+ G + + +GT
Sbjct: 205 HLLPRVMKDS-KNEGFVHVNQFYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTS 263
Query: 187 GTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDET 246
G ++ A YL+ +P I+ V+P + + G I+ + G + + +++
Sbjct: 264 GHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPG-------IRRVETGMLW-INMLDISYTL 315
Query: 247 VQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYL 306
+++ EEA+E +A +GL++G S GAA A + A + VVV P G +YL
Sbjct: 316 AEVTLEEAMEAVVEVARSDGLVIGPSGGAAVKALAKKAAEGDLEPGDYVVVVPDTGFKYL 375
Query: 307 SSVLF 311
S V
Sbjct: 376 SLVQN 380
|
| >3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Length = 527 | Back alignment and structure |
|---|
Score = 480 bits (1238), Expect = e-169
Identities = 123/315 (39%), Positives = 179/315 (56%), Gaps = 12/315 (3%)
Query: 8 IAKDVTELIGKTPLVYLNRIV--DGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGL 65
I ++ E+IG TPLV LN I DG + AK E + P SVKDRIGY M+ DAEE+GL
Sbjct: 50 ITPNILEVIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQDAEEQGL 109
Query: 66 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD-- 123
++PG +IEPTSGNTGIGLA A KGY+ II MP MS E+ L GA+++ T
Sbjct: 110 LKPG-YTIIEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPTE 168
Query: 124 -PARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSG 182
+G + A++++ +TPNS VL Q+ N NP HY+ T EI K+D +V
Sbjct: 169 AAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLAHYDGTAAEILWQLDNKVDMIVVS 228
Query: 183 IGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV-----LSGGKPGPHKIQGIGAGFIPGV 237
GT GT++G G+ +KE P ++ GV+P S + L+ ++++GIG F P V
Sbjct: 229 AGTAGTISGIGRKIKEQVPSCQIVGVDPYGSILARPAELNKTDVQFYEVEGIGYDFPPTV 288
Query: 238 LDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVV 297
D ++D +I + ++ L +EGLL G SSG A AA++ A++ G+ VV+
Sbjct: 289 FDDTVVDVWTKIGDSDCFPMSRRLNAEEGLLCGGSSGGAMHAALEHARK-LKKGQRCVVI 347
Query: 298 FPSFGERYLSSVLFE 312
P Y++ + +
Sbjct: 348 LPDGIRNYMTKFVSD 362
|
| >1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A* Length = 435 | Back alignment and structure |
|---|
Score = 474 bits (1222), Expect = e-168
Identities = 128/315 (40%), Positives = 185/315 (58%), Gaps = 12/315 (3%)
Query: 8 IAKDVTELIGKTPLVYLNRIV--DGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGL 65
I D+ + IG TP+V +N+I G + AK E SVKDRI MI DAE G
Sbjct: 98 ILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGT 157
Query: 66 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD-- 123
++PG +IEPTSGNTGIGLA AA +GYR II MP MS E+ VL A GAE+V T
Sbjct: 158 LKPG-DTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTN 216
Query: 124 -PARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSG 182
+ V A ++++ PNS++L Q+ N +NP HY+TT EI + GK+D LV+
Sbjct: 217 ARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVAS 276
Query: 183 IGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV-----LSGGKPGPHKIQGIGAGFIPGV 237
+GTGGT+TG + LKE P ++ GV+P S + L+ + ++++GIG FIP V
Sbjct: 277 VGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTYEVEGIGYDFIPTV 336
Query: 238 LDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVV 297
LD ++D+ + + EEA A++L +EGLL G S+G+ A A++ A+ + G+ VV+
Sbjct: 337 LDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKAAQELQ-EGQRCVVI 395
Query: 298 FPSFGERYLSSVLFE 312
P Y++ L +
Sbjct: 396 LPDSVRNYMTKFLSD 410
|
| >2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis} Length = 360 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 1e-21
Identities = 64/301 (21%), Positives = 108/301 (35%), Gaps = 33/301 (10%)
Query: 17 GKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEP 76
G TPL+ + I K+E + P S KDR + DA G ++
Sbjct: 37 GGTPLIAATNLSKQTGCTIHLKVEGLNPTGSFKDRGMTMAVTDALAHGQ-----RAVLCA 91
Query: 77 TSGNTGIGLAFMAAAKGYRLIITMPAS-MSLERRMVLLAFGAELVLTDPARGMKGAVQKA 135
++GNT A AA G + +P +++ + + GA+++ D ++ A
Sbjct: 92 STGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQIDGNFD--DCLELA 149
Query: 136 EEIRDKTPNSYVLQQFENPANPKIH--YETTGPEIWKGTGGKIDALVSGIGTGGTVTGAG 193
++ P ++ N NP +T EI G D +G G +T
Sbjct: 150 RKMAADFPTISLV----NSVNPVRIEGQKTAAFEIVDVLGTAPDVHALPVGNAGNITAYW 205
Query: 194 KYLKE--------HNPEIKLYGVEPVESAVLSGGKPGPHK---IQGIGAGFIP-GVLDVN 241
K E P ++ G + +A L G+P H I G V
Sbjct: 206 KGYTEYHQLGLIDKLP--RMLGTQAAGAAPLVLGEPVSHPETIATAIRIGSPASWTSAVE 263
Query: 242 LLDET----VQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE-NAGKLIVV 296
++ + S EE + L+A EG+ V +S A+ A ++ G +V
Sbjct: 264 AQQQSKGRFLAASDEEILAAYHLVARVEGVFVEPASAASIAGLLKAIDDGWVARGSTVVC 323
Query: 297 V 297
Sbjct: 324 T 324
|
| >2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus} Length = 352 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 4e-20
Identities = 66/303 (21%), Positives = 111/303 (36%), Gaps = 36/303 (11%)
Query: 17 GKTPLVYLNRIVD--GCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLI 74
G TPL+ + + G +I K E + P S KDR I+ A E G +I
Sbjct: 29 GNTPLIEADNLARAIGFKGKIYLKYEGLNPTGSFKDRGMTLAISKAVEAGK-----RAVI 83
Query: 75 EPTSGNTGIGLAFMAAAKGYRLIITMPASM-SLERRMVLLAFGAELVLTDPARGMKGAVQ 133
++GNT A AA G R + +P ++ + + +GA+++ A+
Sbjct: 84 CASTGNTSASAAAYAARAGLRAYVLLPKGAVAIGKLSQAMIYGAKVLAIQGTFD--DALN 141
Query: 134 KAEEIRDKTPNSYVLQQFENPANPKIH--YETTGPEIWKGTGGKIDALVSGIGTGGTVTG 191
+I + P V N NP +T EI G D +G G +T
Sbjct: 142 IVRKIGENFPVEIV-----NSVNPYRIEGQKTAAFEICDTLGEAPDYHFIPVGNAGNITA 196
Query: 192 AGKYLKE--------HNPEIKLYGVEPVESAVLSGGKPGPHK---IQGIGAGFIP-GVLD 239
K K P ++ G + +A + G P + I G
Sbjct: 197 YWKGFKIYYEEGKITKLP--RMMGWQAEGAAPIVKGYPIKNPQTIATAIKIGNPYSWKSA 254
Query: 240 VNLLDET----VQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE-NAGKLI 294
+ E+ +S E + KL+A EG+ +S A+ A I++ + G+++
Sbjct: 255 LKAAQESGGKIDAVSDSEILYAYKLIASTEGVFCEPASAASVAGLIKLVREGFFKGGEVV 314
Query: 295 VVV 297
Sbjct: 315 TCT 317
|
| >3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A Length = 351 | Back alignment and structure |
|---|
Score = 87.3 bits (217), Expect = 1e-19
Identities = 67/303 (22%), Positives = 112/303 (36%), Gaps = 36/303 (11%)
Query: 17 GKTPLVYLN--RIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLI 74
G TPL+ L R+ AK E + P S KDR ++ A E G +
Sbjct: 27 GSTPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKAVEGGA-----QAVA 81
Query: 75 EPTSGNTGIGLAFMAAAKGYRLIITMPASM-SLERRMVLLAFGAELVLTDPARGMKGAVQ 133
++GNT A AA G I+ +PA +L + L GA +V + A++
Sbjct: 82 CASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVEGNFD--DALR 139
Query: 134 KAEEIRDKTPNSYVLQQFENPANPKIH--YETTGPEIWKGTGGKIDALVSGIGTGGTVTG 191
+++ + P + V N NP +T E+ G +G G +T
Sbjct: 140 LTQKLTEAFPVALV-----NSVNPHRLEGQKTLAFEVVDELGDAPHYHALPVGNAGNITA 194
Query: 192 AGKYLKE--------HNPEIKLYGVEPVESAVLSGGKP--GPHKI-QGIGAGFIP-GVLD 239
K P ++ G + +A L G+P P + I G
Sbjct: 195 HWMGYKAYHALGKAKRLP--RMLGFQAAGAAPLVLGRPVERPETLATAIRIGNPASWQGA 252
Query: 240 VNLLDET----VQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE-NAGKLI 294
V +E+ ++ EE + + LA +EG+ +S AA A ++ + +
Sbjct: 253 VRAKEESGGVIEAVTDEEILFAYRYLAREEGIFCEPASAAAMAGVFKLLREGRLEPESTV 312
Query: 295 VVV 297
V+
Sbjct: 313 VLT 315
|
| >1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A* Length = 486 | Back alignment and structure |
|---|
Score = 86.8 bits (215), Expect = 3e-19
Identities = 58/340 (17%), Positives = 114/340 (33%), Gaps = 46/340 (13%)
Query: 17 GKTPLVYLNRIVD--GCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLI 74
G + L + R + + K + S KD +++ ++ +
Sbjct: 129 GNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVG 188
Query: 75 EPTSGNTGIGLAFMAAAKGYRLIITMPA-SMSLERRMVLLAFGAELVLTDPARGMKGAVQ 133
++G+T L+ A+ G I+ +PA +S+ + + +A GA ++ D G ++
Sbjct: 189 CASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDTDFD--GCMK 246
Query: 134 KAEEIRDKTPNSYVLQQFENPANPKIH--YETTGPEIWKGTGGKI-DALVSGIGTGGTVT 190
EI + P N N +T EI + ++ D ++ G G +
Sbjct: 247 LIREITAELPIYLA-----NSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIY 301
Query: 191 GAGKYLK--------EHNPEIKLYGVE-----PVESAVLSGGK-----PGPHKI-QGIGA 231
K K + P ++ + P+ SG K I
Sbjct: 302 AFYKGFKXCQELGLVDRIP--RMVCAQAANANPLYLHYKSGWKDFKPMTASTTFASAIQI 359
Query: 232 GFIP-GVLDVNLLDET---VQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRP 287
G V L + V+ ++EE + A A G+ + +G A A ++ +
Sbjct: 360 GDPVSIDRAVYALKKCNGIVEEATEEELMDAMAQADSTGMFICPHTGVALTALFKLRNQG 419
Query: 288 E-NAGKLIVVV-------FPSFGERYLSSVLFESVKKEAE 319
VVV F Y S+ + + + +
Sbjct: 420 VIAPTDRTVVVSTAHGLKFTQSKIDYHSNAIPDMACRFSN 459
|
| >3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A Length = 442 | Back alignment and structure |
|---|
Score = 82.1 bits (203), Expect = 1e-17
Identities = 54/288 (18%), Positives = 93/288 (32%), Gaps = 42/288 (14%)
Query: 32 VARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAA 91
V A KL + ++ D YS + E K + + ++GN G+ + M+A
Sbjct: 126 VLAHAEKLALEAGLLTLDD--DYSKLLSPEFKQFF--SQYSIAVGSTGNLGLSIGIMSAR 181
Query: 92 KGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKG----AVQKAEEIRDKTPNSYV 147
G+++ + M A ++ L + G +V + AV++ + PN
Sbjct: 182 IGFKVTVHMSADARAWKKAKLRSHGVTVVEYE------QDYGVAVEEGRKAAQSDPN-CF 234
Query: 148 LQQFENPANPKIHYETTGPEI--------WKGTGGKIDALVSGIGTGGTVTGAGKYLKEH 199
EN + Y G + + G GG G LK
Sbjct: 235 FIDDENSRTLFLGYSVAGQRLKAQFAQQGRIVDADNPLFVYLPCGVGGGPGGVAFGLKLA 294
Query: 200 -NPEIKLYGVEPVESAV----LSGGKPGPHKIQGIG--------------AGFIPGVLDV 240
+ + EP S + G +Q IG A G
Sbjct: 295 FGDHVHCFFAEPTHSPCMLLGVHTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAME 354
Query: 241 NLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE 288
LLD +S + + LA +EG+ + S+ A A ++
Sbjct: 355 RLLDGFYTLSDQTMYDMLGWLAQEEGIRLEPSALAGMAGPQRVCASVS 402
|
| >4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A* Length = 398 | Back alignment and structure |
|---|
Score = 76.4 bits (188), Expect = 1e-15
Identities = 61/320 (19%), Positives = 97/320 (30%), Gaps = 48/320 (15%)
Query: 18 KTPLVYLNRIVDGC-VARIAAKLEMM--------------EPCSSVKDRIGYSMIADAEE 62
TPL L+ + + V +I K E + ++ + + E
Sbjct: 44 PTPLCALDDLANLFGVKKILVKDESKRFGLNAFXMLGGAYAIAQLLCEKYHLDIETLSFE 103
Query: 63 KGLIRPGESV-LIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121
GE + T GN G G+A+ A G +I MP + ER +L GAE ++
Sbjct: 104 HLKNAIGEKMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIV 163
Query: 122 TDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIH------YETTGPEIW---KGT 172
TD V+ + + V+Q KI Y T E +
Sbjct: 164 TD--MNYDDTVRLTMQHAQQH-GWEVVQDTAWEGYTKIPTWIMQGYATLADEAVEQMREM 220
Query: 173 GGKIDALVSGIGTGGTVTGAGKYLKEH--NPEIKLYGVEPVESAV----LSGGKPGPHKI 226
G ++ G G G YL + + VEP ++ G
Sbjct: 221 GVTPTHVLLQAGVGAMAGGVLGYLVDVYSPQNLHSIIVEPDKADCIYRSGVKGDIVNVGG 280
Query: 227 Q------GIGAGFIPGVL--DV--NLLDETVQISSEEAIETAKLLALKEGLLVGIS---S 273
G+ G P L ++ N + + A ++L G I S
Sbjct: 281 DMATIMAGLACG-EPNPLGWEILRNCATQFISCQDSVAALGMRVLGNPYGNDPRIISGES 339
Query: 274 GAATAAAIQIAKRPENAGKL 293
GA + L
Sbjct: 340 GAVGLGVLAAVHYHPQRQSL 359
|
| >1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A* Length = 372 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 8e-14
Identities = 59/318 (18%), Positives = 110/318 (34%), Gaps = 46/318 (14%)
Query: 2 VEEKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAE 61
+ S L KTP+ + + K++ +P S K R
Sbjct: 30 MGRGSEFMMSGEPLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWA 89
Query: 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121
++G + ++GN G+ A+ A G I +P + L GA +
Sbjct: 90 KQGCAH-----FVCSSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKV 144
Query: 122 TDPARGMKG-----AVQKAEEIRDKTPNSYVLQQFENP------ANPKIHYETTGPEIWK 170
G A + A+ + P + F++P A + E+ +
Sbjct: 145 V-------GELLDEAFELAKALAKNNPGWVYIPPFDDPLIWEGHA-------SIVKELKE 190
Query: 171 GTGGKIDALVSGIGTGGTVTGAGKYLKEHN-PEIKLYGVEPVESAV----LSGGK----P 221
K A+ +G GG + G + L+E ++ + +E + + GK P
Sbjct: 191 TLWEKPGAIALSVGGGGLLCGVVQGLQECGWGDVPVIAMETFGAHSFHAATTAGKLVSLP 250
Query: 222 GPHKI-QGIGAGFIPGVLDVNL----LDETVQISSEEAIETAKLLALKEGLLVGISSGAA 276
+ + +G G + L + IS +EA+ + E +LV + GAA
Sbjct: 251 KITSVAKALGVK-TVGSQALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVEPACGAA 309
Query: 277 TAAAIQ-IAKRPENAGKL 293
AA + ++ + G L
Sbjct: 310 LAAVYSHVIQKLQLEGNL 327
|
| >1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A* Length = 323 | Back alignment and structure |
|---|
Score = 69.8 bits (172), Expect = 9e-14
Identities = 59/308 (19%), Positives = 115/308 (37%), Gaps = 51/308 (16%)
Query: 16 IGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIA--DAEEKGLIRPGESVL 73
KTP++ + + VA + K E + + K R + ++ + ++ + G +
Sbjct: 24 ANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLNEAQR---KAG---V 77
Query: 74 IEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQ 133
+ +SGN +A A G I MP + +G ++++ D +
Sbjct: 78 LTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDRY--KDDREK 135
Query: 134 KAEEIRDKTPNSYVLQQFENPANPKIH-YE---------TTGPEIWKGTGGKIDALVSGI 183
A+EI ++ + I Y+ T E+++ G +DAL +
Sbjct: 136 MAKEISERE--GLTI----------IPPYDHPHVLAGQGTAAKELFEEVGP-LDALFVCL 182
Query: 184 GTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV----LSGGKPGPHKIQ-----GIGAGFI 234
G GG ++G+ + P ++YGVEP G G
Sbjct: 183 GGGGLLSGSALAARHFAPNCEVYGVEPEAGNDGQQSFRKGSIVHIDTPKTIADGAQTQ-H 241
Query: 235 PGVL--DVN--LLDETVQISSEEAIETAKLLALKEGLLV-GISSGAATAAAIQIAKRPEN 289
G + +D+ + +S EE I+ K A + ++V +G + AA A + +
Sbjct: 242 LGNYTFSIIKEKVDDILTVSDEELIDCLKFYAARMKIVVEP--TGCLSFAAA-RAMKEKL 298
Query: 290 AGKLIVVV 297
K I ++
Sbjct: 299 KNKRIGII 306
|
| >1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1 Length = 311 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 2e-13
Identities = 67/323 (20%), Positives = 122/323 (37%), Gaps = 66/323 (20%)
Query: 9 AKDVTELIGKTPLVY---LNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAE-EKG 64
+ + +TPL+ L+ ++ R+ K E ++ S K R S E KG
Sbjct: 11 FRRIAPYTHRTPLLTSRLLDGLLG---KRLLLKAEHLQKTGSFKARGALSKALALENPKG 67
Query: 65 LIRPGESVLIEPT--SGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 122
L+ SGN G+A+ A G + ++ MP S ++ A+GAE+V
Sbjct: 68 LL----------AVSSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDR 117
Query: 123 DPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIH-YE---------TTGPEIW--- 169
K + A ++++T Y L IH ++ T G E+
Sbjct: 118 GVTA--KNREEVARALQEET--GYAL----------IHPFDDPLVIAGQGTAGLELLAQA 163
Query: 170 KGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV----LSGGKPGPHK 225
G A+++ +G GG + G +K +P + GVEP + L G+ +
Sbjct: 164 GRMGVFPGAVLAPVGGGGLLAGLATAVKALSPTTLVLGVEPEAADDAKRSLEAGRILRLE 223
Query: 226 IQ------GIGAGFIPGVL--DVN--LLDETVQISSEEAIETAKLLALKEGLLV-GISSG 274
G+ G + +D + +S E +E +LL + +V +G
Sbjct: 224 APPRTRADGVRTL-SLGERTFPILRERVDGILTVSEEALLEAERLLFTRTKQVVEP--TG 280
Query: 275 AATAAAIQIAKRPENAGKLIVVV 297
A AA + + + + ++
Sbjct: 281 ALPLAA--VLEHGARLPQTLALL 301
|
| >3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} PDB: 3l6r_A* 3hmk_A* 3l6c_A* Length = 346 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 1e-12
Identities = 64/310 (20%), Positives = 126/310 (40%), Gaps = 49/310 (15%)
Query: 16 IGKTPLVY---LNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESV 72
I TP++ LN++ + K E+ + S K R + + L R ++V
Sbjct: 23 IHLTPVLTSSILNQLTG---RNLFFKCELFQKTGSFKIRGALNAVRSLVPDALERKPKAV 79
Query: 73 LIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAV 132
+ +SGN G L + A +G I +P + +++ + A+GA +V +P+ +
Sbjct: 80 -VTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPS--DESRE 136
Query: 133 QKAEEIRDKTPNSYVLQQFENPANPKIH-YE---------TTGPEIWKGTGGKIDALVSG 182
A+ + ++T ++ +H + T E+ +DALV
Sbjct: 137 NVAKRVTEET--EGIM----------VHPNQEPAVIAGQGTIALEVLNQVPL-VDALVVP 183
Query: 183 IGTGGTVTGAGKYLKEHNPEIKLYGVEP--VESAVLS--GGKPGPHKIQ------GIGAG 232
+G GG + G +K P +K+Y EP + S GK P+ G+ +
Sbjct: 184 VGGGGMLAGIAITVKALKPSVKVYAAEPSNADDCYQSKLKGKLMPNLYPPETIADGVKSS 243
Query: 233 FIPGVL--DVN--LLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE 288
G+ + L+D+ ++ +E +L+ + LL+ ++G AA + +
Sbjct: 244 --IGLNTWPIIRDLVDDIFTVTEDEIKCATQLVWERMKLLIEPTAGVGVAAVLSQHFQTV 301
Query: 289 NA-GKLIVVV 297
+ K I +V
Sbjct: 302 SPEVKNICIV 311
|
| >2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens} Length = 318 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 1e-12
Identities = 63/315 (20%), Positives = 103/315 (32%), Gaps = 53/315 (16%)
Query: 15 LIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLI 74
TPL+ + + K E ++P S K R + +KG L+
Sbjct: 4 FHVVTPLLESWALSQVAGMPVFLKCENVQPSGSFKIRGIGHFCQEMAKKGCRH-----LV 58
Query: 75 EPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKG---- 130
+ GN GI A+ A G I +P S SL+ L GAE+ LT G
Sbjct: 59 CSSGGNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAEVQLT-------GKVWD 111
Query: 131 -AVQKAEEIRDKTPNSYVLQQFENPANPKIHYE------TTGPEIWKGTGGKIDALV-SG 182
A +A+E+ + V P H + E+ ALV +
Sbjct: 112 EANLRAQELAKRDGWENV--------PPFDHPLIWKGHASLVQELKAVLRTPPGALVLAV 163
Query: 183 IGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV----LSGGKPGPHKI-----QGIGAGF 233
G G L+ + + +E + ++ GK + +GA
Sbjct: 164 GGGGLLAGVVAGLLEVGWQHVPIIAMETHGAHCFNAAITAGKLVTLPDITSVAKSLGAK- 222
Query: 234 IPGVLDVNL----LDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAA-------IQ 282
+ + + EA+ + L E +LV + GAA AA +Q
Sbjct: 223 TVAARALECMQVCKIHSEVVEDTEAVSAVQQLLDDERMLVEPACGAALAAIYSGLLRRLQ 282
Query: 283 IAKRPENAGKLIVVV 297
+ +VV+
Sbjct: 283 AEGCLPPSLTSVVVI 297
|
| >1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2 Length = 514 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 4e-12
Identities = 73/325 (22%), Positives = 121/325 (37%), Gaps = 61/325 (18%)
Query: 5 KSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIA--DAEE 62
++V+ V E TPL + ++ I K E +P S K R Y+M+A E+
Sbjct: 18 RAVLRAPVYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQ 77
Query: 63 --KGLIRPGESVLIEPTS--GNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118
G+I T+ GN G+AF +A G + +I MP + + + + FG E
Sbjct: 78 KAHGVI----------TASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGE 127
Query: 119 LVLTDPARGMKG-----AVQKAEEIRDKTPNSYVLQQFENPANPKIHYE------TTGPE 167
++L G A KA E+ + ++V P H T E
Sbjct: 128 VLLH-------GANFDEAKAKAIELSQQQGFTWV--------PPFDHPMVIAGQGTLALE 172
Query: 168 IWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV----LSGGKPGP 223
+ + +D + +G GG G +K+ P+IK+ VE +SA L G P
Sbjct: 173 LLQQDA-HLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSACLKAALDAGH--P 229
Query: 224 HKIQGIGAGFIPGV---------LDV--NLLDETVQISSEEAIETAKLLALKEGLLVGIS 272
+ +G F GV + LD+ + + S+ K L + S
Sbjct: 230 VDLPRVGL-FAEGVAVKRIGDETFRLCQEYLDDIITVDSDAICAAMKDLFEDVRAVAEPS 288
Query: 273 SGAATAAAIQIAKRPENAGKLIVVV 297
A A + G+ + +
Sbjct: 289 GALALAGMKKYIALHNIRGERLAHI 313
|
| >3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum} Length = 366 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 2e-11
Identities = 70/324 (21%), Positives = 117/324 (36%), Gaps = 59/324 (18%)
Query: 5 KSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIA--DAEE 62
++A V ++ ++PL ++ D K E + S K R Y+M++ EE
Sbjct: 47 VDILASPVYDVAIESPLELAEKLSDRLGVNFYIKREDKQRVFSFKLRGAYNMMSNLSREE 106
Query: 63 --KGLIRPGESVLIEPTS--GNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118
KG+I T+ GN G+A I MP + + + A G +
Sbjct: 107 LDKGVI----------TASAGNHAQGVALAGQRLNCVAKIVMPTTTPQIKIDAVRALGGD 156
Query: 119 LVLT----DPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYE------TTGPEI 168
+VL D A+ A E+ +K Y+ F++P T G EI
Sbjct: 157 VVLYGKTFDEAQ------THALELSEKDGLKYI-PPFDDP-------GVIKGQGTIGTEI 202
Query: 169 WKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV----LSGGKPGPH 224
+ I A+ +G GG + G + K+ P K+ GVEP +A L G
Sbjct: 203 NRQLK-DIHAVFIPVGGGGLIAGVATFFKQIAPNTKIIGVEPYGAASMTLSLHEGHRVKL 261
Query: 225 KIQGIGAGFIPGV-----------LDVNLLDETVQISSEEAIETAKLLALKEGLLVGISS 273
F GV L+D V ++++ K + + ++ S
Sbjct: 262 SNVDT---FADGVAVALVGEYTFAKCQELIDGMVLVANDGISAAIKDVYDEGRNILETSG 318
Query: 274 GAATAAAIQIAKRPENAGKLIVVV 297
A A A + + + IV +
Sbjct: 319 AVAIAGAAAYCEFYKIKNENIVAI 342
|
| >1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A* Length = 338 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 1e-06
Identities = 30/181 (16%), Positives = 53/181 (29%), Gaps = 23/181 (12%)
Query: 135 AEEIRDKTPNSYVL-QQFENPANPKIHY---ETTGPEIWKGTGGKIDALVSGIGTGGTVT 190
E +R Y + + + + G K D +V TG T
Sbjct: 145 LESVRAAGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQA 204
Query: 191 GAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGI--------GAGFIPGVLDVNL 242
G ++ GV + +I I G DV L
Sbjct: 205 GMVVGFAADGRADRVIGV-----DASAKPAQTREQITRIARQTAEKVGLERDIMRADVVL 259
Query: 243 LDETVQ----ISSEEAIETAKLLALKEGLLVG-ISSGAATAAAIQIAKRPE-NAGKLIVV 296
+ + +E +E +L A EG+L + G + I++ + E G ++
Sbjct: 260 DERFAGPEYGLPNEGTLEAIRLCARTEGMLTDPVYEGKSMHGMIEMVRNGEFPEGSRVLY 319
Query: 297 V 297
Sbjct: 320 A 320
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 325 | |||
| 3vc3_A | 344 | Beta-cyanoalnine synthase; beta-cyanoalanine synth | 100.0 | |
| 4aec_A | 430 | Cysteine synthase, mitochondrial; lyase, cysteine | 100.0 | |
| 3tbh_A | 334 | O-acetyl serine sulfhydrylase; cysteine synthase, | 100.0 | |
| 1z7w_A | 322 | Cysteine synthase; transferase; HET: PLP; 2.20A {A | 100.0 | |
| 2q3b_A | 313 | Cysteine synthase A; pyridoxal-5'-phosphate, sulph | 100.0 | |
| 2v03_A | 303 | Cysteine synthase B; pyridoxal phosphate, cysteine | 100.0 | |
| 1y7l_A | 316 | O-acetylserine sulfhydrylase, O-acetylserine (thio | 100.0 | |
| 2pqm_A | 343 | Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.8 | 100.0 | |
| 3dwg_A | 325 | Cysteine synthase B; sulfur carrier protein comple | 100.0 | |
| 2egu_A | 308 | Cysteine synthase; O-acetylserine sulfhydrase, str | 100.0 | |
| 1ve1_A | 304 | O-acetylserine sulfhydrylase; PLP, transferase, ri | 100.0 | |
| 1jbq_A | 435 | B, cystathionine beta-synthase, serine sulfhydrase | 100.0 | |
| 1o58_A | 303 | O-acetylserine sulfhydrylase; TM0665, structural g | 100.0 | |
| 3pc3_A | 527 | CG1753, isoform A; CBS, synthase, PLP, heme, amino | 100.0 | |
| 3l6b_A | 346 | Serine racemase; pyridoxal phosphate, PLP, isomera | 100.0 | |
| 3aey_A | 351 | Threonine synthase; PLP, pyridoxal phosphate, lyas | 100.0 | |
| 2gn0_A | 342 | Threonine dehydratase catabolic; TDCB, biodegradat | 100.0 | |
| 2d1f_A | 360 | Threonine synthase; amino acid synthesis, pyridoxa | 100.0 | |
| 4h27_A | 364 | L-serine dehydratase/L-threonine deaminase; PLP de | 100.0 | |
| 2zsj_A | 352 | Threonine synthase; PLP dependent enzyme, lyase; H | 100.0 | |
| 1p5j_A | 372 | L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo | 100.0 | |
| 2rkb_A | 318 | Serine dehydratase-like; PLP bound enzyme, enzyme | 100.0 | |
| 1ve5_A | 311 | Threonine deaminase; riken structural genomics/Pro | 100.0 | |
| 1v71_A | 323 | Serine racemase, hypothetical protein C320.14 in c | 100.0 | |
| 3iau_A | 366 | Threonine deaminase; pyridoxal phosphate, amino-ac | 100.0 | |
| 1tdj_A | 514 | Biosynthetic threonine deaminase; allostery, coope | 100.0 | |
| 3ss7_X | 442 | D-serine dehydratase; type II fold, ALFA,beta-elim | 100.0 | |
| 1wkv_A | 389 | Cysteine synthase; homodimer, open alpha/beta fold | 100.0 | |
| 4d9i_A | 398 | Diaminopropionate ammonia-lyase; fold type II PLP- | 100.0 | |
| 4d9b_A | 342 | D-cysteine desulfhydrase; fold type II PLP-depende | 100.0 | |
| 1f2d_A | 341 | 1-aminocyclopropane-1-carboxylate deaminase; carbo | 100.0 | |
| 1j0a_A | 325 | 1-aminocyclopropane-1-carboxylate deaminase; PLP d | 100.0 | |
| 1tzj_A | 338 | ACC deaminase, 1-aminocyclopropane-1-carboxylate d | 100.0 | |
| 1e5x_A | 486 | Threonine synthase; threonine biosynthesis, PLP en | 100.0 | |
| 1x1q_A | 418 | Tryptophan synthase beta chain; structural genomic | 100.0 | |
| 1qop_B | 396 | Tryptophan synthase beta chain; lyase, carbon-oxyg | 100.0 | |
| 1v8z_A | 388 | Tryptophan synthase beta chain 1; beta+alpha, rike | 100.0 | |
| 2o2e_A | 422 | Tryptophan synthase beta chain; amino-acid biosynt | 100.0 | |
| 1vb3_A | 428 | Threonine synthase; PLP-dependent enzyme, lyase; H | 100.0 | |
| 1kl7_A | 514 | Threonine synthase; threonine synthesis, pyridoxal | 100.0 | |
| 4f4f_A | 468 | Threonine synthase; structural genomics, niaid, na | 100.0 | |
| 3v7n_A | 487 | Threonine synthase; ssgcid, structural genomics, s | 100.0 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 95.02 | |
| 1vp8_A | 201 | Hypothetical protein AF0103; putative pyruvate kin | 92.48 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 90.92 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 90.48 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 90.41 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 90.31 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 90.13 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 90.09 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 89.68 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 89.6 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 89.45 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 89.19 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 89.02 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 88.43 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 88.4 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 87.37 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 87.12 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 86.64 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 86.6 | |
| 3iup_A | 379 | Putative NADPH:quinone oxidoreductase; YP_296108.1 | 86.17 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 86.09 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 86.06 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 86.02 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 86.0 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 85.9 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 85.77 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 85.76 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 85.68 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 85.35 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 85.23 | |
| 3tpf_A | 307 | Otcase, ornithine carbamoyltransferase; structural | 85.19 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 85.15 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 85.0 | |
| 1t57_A | 206 | Conserved protein MTH1675; structural genomics, FM | 84.98 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 84.54 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 84.43 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 84.32 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 84.32 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 83.94 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 83.69 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 83.69 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 83.23 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 82.48 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 82.16 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 81.98 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 81.63 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 81.53 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 81.41 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 81.32 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 81.3 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 81.12 | |
| 1pvv_A | 315 | Otcase, ornithine carbamoyltransferase; dodecamer; | 81.03 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 81.02 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 81.02 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 80.81 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 80.45 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 80.25 |
| >3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-73 Score=524.14 Aligned_cols=319 Identities=61% Similarity=1.035 Sum_probs=297.4
Q ss_pred chhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHH
Q 020528 7 VIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLA 86 (325)
Q Consensus 7 ~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA 86 (325)
.+.++|.+.||+|||+++++|++.+|++||+|+|++|||||||||++.+++.++.++|.+.+|.++||++|+||||+|+|
T Consensus 24 ~i~~~i~~lIG~TPLv~~~~Ls~~~G~~IylK~E~lnptGSfK~RgA~~~i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA 103 (344)
T 3vc3_A 24 NIKKHVSQLIGRTPLVYLNKVTEGCGAYVAVKQEMMQPTASIADRPAYAMITDAEEKNLITPGKTTLIEPTSGNMGISMA 103 (344)
T ss_dssp SCBSSGGGGSCCCCEEECCSTTTTCCSEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTCCCTTTCEEEEECSSHHHHHHH
T ss_pred hhhccHhhhcCCCceEECcccchhhCCEEEEEecCCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCEEEEeCCcHHHHHHH
Confidence 46678999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred HHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHH
Q 020528 87 FMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGP 166 (325)
Q Consensus 87 ~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~ 166 (325)
++|+++|++|+||||++++..|+++++.|||+|+.+++..++..+...+.++..+.++.++++||+||.+++.||+|++.
T Consensus 104 ~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~np~~~~a~~~t~g~ 183 (344)
T 3vc3_A 104 FMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPAKGMGGTVKKAYELLENTPNAHMLQQFSNPANTQVHFETTGP 183 (344)
T ss_dssp HHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHSTTEECCCTTTCHHHHHHHHHTHHH
T ss_pred HHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCCCcchHHHHHHHHHHhhccCceeccccccchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999987555566666677777777789999999999988899999999
Q ss_pred HHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCCcccccCCCCCCccccccccCCeE
Q 020528 167 EIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDET 246 (325)
Q Consensus 167 Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~ 246 (325)
||++|+.+.||+||+|+|+||+++|++.++|+.+|++|||+|||.+++.+..+.+.++.+++++....+...+.+.+|++
T Consensus 184 EI~eq~~~~~d~vv~~vGgGG~~~Gi~~~~k~~~p~v~vigVep~~s~~l~~~~~~~~~i~g~g~~~~~~~~~~~~~d~~ 263 (344)
T 3vc3_A 184 EIWEDTNGQVDIFVMGIGSGGTVSGVGQYLKSKNPNVKIYGVEPSESNVLNGGKPGPHHITGNGVGFKPDILDLDVMEKV 263 (344)
T ss_dssp HHHHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEGGGCGGGTCCCCCCSCTTSCCSSCCTTCCGGGCSEE
T ss_pred HHHHHhCCCceEEEEecCCccchHHHhhhhHhhCCCceEEEEcCCCChhhcCCCCCCeeEecccccccCcccchhhceEE
Confidence 99999988999999999999999999999999999999999999999999988888888899888887888888999999
Q ss_pred EEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhHHHHHHhcCCCCCC
Q 020528 247 VQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFESVKKEAESMVFEP 325 (325)
Q Consensus 247 ~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~~~~~~~~~~~~~~ 325 (325)
+.|+|+|+++++++|+++||++++|+||+++++++++++....++++||+|+||+|+||+|+++|++|+++..+++|.+
T Consensus 264 v~v~d~eai~a~~~L~~~eGi~v~~ssga~~~aAl~~a~~~~~~g~~VV~il~d~G~rYlst~~~~~~~~e~~~~~p~~ 342 (344)
T 3vc3_A 264 LEVSSEDAVNMARVLALKEGLMVGISSGANTVAALRLAQLPENKGKLIVTVHPSFGERYLSSVLFQELRQEAENMQPVA 342 (344)
T ss_dssp EEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHTSGGGTTCEEEEEECBBGGGGTTSTTTHHHHHHHHTCCCBC
T ss_pred EEECHHHHHHHHHHHHHHCCCEEehhHHHHHHHHHHHhccccCCCCEEEEEECCCchhhccchhhHHHHHHhccCCCCC
Confidence 9999999999999999999999999999999999998875546889999999999999999999999999999988753
|
| >4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-70 Score=516.88 Aligned_cols=319 Identities=74% Similarity=1.180 Sum_probs=295.4
Q ss_pred cchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHH
Q 020528 6 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGL 85 (325)
Q Consensus 6 ~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~al 85 (325)
.++++++.+++++|||+++++|++.+|.+||+|+|++|||||||||++.+++..++++|++++|..+||++|+||||+|+
T Consensus 111 ~~~~~~i~~~ig~TPLv~l~~Ls~~~g~~I~lK~E~lnptGSfKdRgA~~~i~~A~~~G~l~~g~~~VV~aSsGNhG~Al 190 (430)
T 4aec_A 111 LNIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGL 190 (430)
T ss_dssp CSCBSSGGGGSSCCCEEECCGGGTTCSSEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHH
T ss_pred cchhhhhhccCCCCCeEEChhhhhhcCCeEEEEECCCCCCCCHHHHHHHHHHHHHHHcCCCCCCCcEEEEECCCHHHHHH
Confidence 44668899999999999999999888899999999999999999999999999999999999988889999999999999
Q ss_pred HHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchH
Q 020528 86 AFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTG 165 (325)
Q Consensus 86 A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~ 165 (325)
|++|+++|++|+||||++++..|+++++.+||+|+.+++..+++++.+.+++++++.++++|++||+||.|++.||.+++
T Consensus 191 A~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~~~~~~~a~~~a~el~~~~~~~~~i~~~~np~~~~aG~~T~a 270 (430)
T 4aec_A 191 AFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTG 270 (430)
T ss_dssp HHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHSTTEEECCTTTCTHHHHHHHHTHH
T ss_pred HHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECCCCChHHHHHHHHHHHHhcCCcEEecCCCCccHHHHHHHHHH
Confidence 99999999999999999999999999999999999998655688999999999988778999999999999889999999
Q ss_pred HHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCCcccccCCCCCCccccccccCCe
Q 020528 166 PEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDE 245 (325)
Q Consensus 166 ~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~ 245 (325)
.||++|+.+.||+||+|+|+||+++|++.++|+.+|++|||||||++++.+..+++.++.++||+.+..|+.++++++|+
T Consensus 271 ~EI~eQl~~~~D~vVvpvG~GGtlaGi~~~lk~~~p~~kVigVep~~s~~l~~g~~~~~~i~Gl~~~~~p~~l~~~~vd~ 350 (430)
T 4aec_A 271 PEIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIPKNLDQKIMDE 350 (430)
T ss_dssp HHHHHHTTSCEEEEEEECSSSHHHHHHHHHHHHHCTTSEEEEEEEGGGCGGGTCCCCCCSCTTSCCSSCCTTCCTTTCSE
T ss_pred HHHHHHcCCCCCEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEEeCCCcHhhCCCccceeehhccCCCCcHHHHHHhCCe
Confidence 99999997789999999999999999999999999999999999999999988888888899999888888999999999
Q ss_pred EEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhHHHHHHhcCCCCC
Q 020528 246 TVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFESVKKEAESMVFE 324 (325)
Q Consensus 246 ~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~~~~~~~~~~~~~ 324 (325)
++.|+|+|++++++++++++|+++||++|++++++++++++...++++||+|+||+|+||+++.+|+++.++...++|+
T Consensus 351 ~v~Vsd~ea~~a~r~La~~eGi~vepssGaa~aAal~la~~~~~~g~~VV~Il~d~G~rylst~~~~~~~~~~~~~~~~ 429 (430)
T 4aec_A 351 VIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPENAGKLIAVVFPSFGERYLSTPLFQSIREEVEKMQPE 429 (430)
T ss_dssp EEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHTTSGGGTTCEEEEEECBBGGGGTTSHHHHHHHHHC------
T ss_pred EEEECHHHHHHHHHHHHHHCCCEEehHHHHHHHHHHHHHHhcCCCcCeEEEEECCCCccccchhhhhhhhhhhhcCccc
Confidence 9999999999999999999999999999999999999877654578999999999999999999999999988887765
|
| >3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-70 Score=504.31 Aligned_cols=317 Identities=50% Similarity=0.851 Sum_probs=290.3
Q ss_pred cchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHH
Q 020528 6 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGL 85 (325)
Q Consensus 6 ~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~al 85 (325)
..+.+++.+.+++|||+++++| ...|.+||+|+|++|||||||||++.+++..+.++|.+++|.+.||++|+||||+|+
T Consensus 9 ~~~~~~i~~~ig~TPL~~l~~l-~~~g~~i~~K~E~~~ptGSfK~R~a~~~i~~a~~~g~l~~g~~vvv~aSsGN~g~al 87 (334)
T 3tbh_A 9 KNVAQSIDQLIGQTPALYLNKL-NNTKAKVVLKMECENPMASVKDRLGFAIYDKAEKEGKLIPGKSIVVESSSGNTGVSL 87 (334)
T ss_dssp TSCCSSGGGGSSCCCEEECCTT-CCSSSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHH
T ss_pred HHHHHHHHHhcCCCCeEECCcc-cCCCCEEEEEeCCCCCccCcHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCHHHHHH
Confidence 3466789999999999999999 777889999999999999999999999999999999988885546999999999999
Q ss_pred HHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchH
Q 020528 86 AFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTG 165 (325)
Q Consensus 86 A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~ 165 (325)
|++|+.+|++|+||||++++..|+++++.+||+|+.++...+++++.+.+++++++.++++|++||+||.|++.||.+++
T Consensus 88 A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~i~~~~np~n~~~g~~t~~ 167 (334)
T 3tbh_A 88 AHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAALGMKGAVAMAKKIVAANPNAVLADQFATKYNALIHEETTG 167 (334)
T ss_dssp HHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHCTTEEECCTTTCHHHHHHHHHTHH
T ss_pred HHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCchHHHHHHHHHHHhCCCEEECCccCChhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999755688999999999988778999999999998889999999
Q ss_pred HHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCCcccccCCCCCCccccccccCCe
Q 020528 166 PEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDE 245 (325)
Q Consensus 166 ~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~ 245 (325)
+||++|+.+.||+||+|+|+||+++|++.++|+.+|.+|||+|||++++.+..+.+.++.+++|+.+..|+.+.++++|+
T Consensus 168 ~Ei~~q~~~~~d~vv~pvG~GG~~aGi~~~~k~~~p~~~vigVe~~~~~~~~~g~~~~~~~~gi~~~~~~~~~~~~~~d~ 247 (334)
T 3tbh_A 168 PEIWEQTNHNVDCFIAGVGTGGTLTGVARALKKMGSHARIVAVEPTESPVLSGGKPGPHKIQGIGPGFVPDVLDRSLIDE 247 (334)
T ss_dssp HHHHHHTTSCCSEEEEECSSSHHHHHHHHHHHHTTCCCEEEEEEETTSCTTTTCCCCCCSCTTSCCSSCCTTCCGGGCSE
T ss_pred HHHHHHhCCCCCEEEeccCCcHhHHHHHHHHHHhCCCCEEEEEeeCCchHhhCCCcCCeecCCCCCCcCCHHHHHHhCCE
Confidence 99999997789999999999999999999999999999999999999999888877778889998888899999999999
Q ss_pred EEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhHHHHHHhcCCCC
Q 020528 246 TVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFESVKKEAESMVF 323 (325)
Q Consensus 246 ~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~~~~~~~~~~~~ 323 (325)
++.|+|+|+++++++|++++|+++||+||++++++++++++...++++||+|+||+|+||+++.+|++.+.+..++++
T Consensus 248 ~~~V~d~e~~~a~~~l~~~egi~~epssgaa~aa~~~~~~~~~~~g~~Vv~v~t~~g~ky~~~~~~~~~~~~~~~~~~ 325 (334)
T 3tbh_A 248 VLCVAGDDAIETALKLTRSDGVFCGFSGGANVYAALKIAERPEMEGKTIVTVIPSFGERYLSTTLYRSVRDEVSSLPV 325 (334)
T ss_dssp EEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHSGGGTTCEEEEEECBBGGGGTTSGGGTHHHHC------
T ss_pred EEEECHHHHHHHHHHHHHHcCeEEcHHHHHHHHHHHHHHHhccCCcCeEEEEECCCCccccCchhhhhhHHHhhhcch
Confidence 999999999999999999999999999999999999988764347899999999999999999999999999888765
|
| >1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-68 Score=493.09 Aligned_cols=316 Identities=81% Similarity=1.285 Sum_probs=292.2
Q ss_pred hhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHH
Q 020528 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAF 87 (325)
Q Consensus 8 ~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 87 (325)
+++++.+.+++|||+++++|++..+.+||+|+|++|||||||||++.+++.++.++|.++|+..+||++|+||||+|+|+
T Consensus 5 ~~~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGSfK~R~a~~~l~~a~~~G~~~~~~~~vv~assGN~g~alA~ 84 (322)
T 1z7w_A 5 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAF 84 (322)
T ss_dssp CCSSGGGGSSCCCEEECCGGGTTCSSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHH
T ss_pred hhhHHHHhcCCCCeEECccccccCCceEEEEecccCCCCchHHHHHHHHHHHHHHcCCCCCCCCEEEEeCCCHHHHHHHH
Confidence 56788999999999999999987788999999999999999999999999999999998888778999999999999999
Q ss_pred HHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHH
Q 020528 88 MAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPE 167 (325)
Q Consensus 88 ~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~E 167 (325)
+|+++|++|+||||.+++..|+++++.+||+|+.+++..+++++.+.+++++++.++++|++||+|+.|+..||.|+++|
T Consensus 85 aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~i~~~~n~~~~~~g~~t~~~E 164 (322)
T 1z7w_A 85 TAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPE 164 (322)
T ss_dssp HHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHCTTEEECCTTTCTHHHHHHHHTHHHH
T ss_pred HHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHhCCCeEeCCCCCChhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999975457889999999998877899999999999977899999999
Q ss_pred HHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCCcccccCCCCCCccccccccCCeEE
Q 020528 168 IWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETV 247 (325)
Q Consensus 168 i~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~ 247 (325)
|++|+.+.||+||+|+|+||+++|++.++|+..|.+||++|+|.+++.+..+.+.++.+++|+.+..|+.+.++++|+++
T Consensus 165 i~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~vigve~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~ 244 (322)
T 1z7w_A 165 IWKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVV 244 (322)
T ss_dssp HHHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEGGGCGGGTCCCCCCSCTTSCCSSCCTTCCGGGCSEEE
T ss_pred HHHHhcCCCCEEEEecCccHhHHHHHHHHHHcCCCCEEEEEecCCCccccCCCCCCcccCcCcCCCCChhhhHHhCCEEE
Confidence 99999768999999999999999999999999999999999999998887777777778899888778888888999999
Q ss_pred EeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhHHHHHHhcCCCC
Q 020528 248 QISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFESVKKEAESMVF 323 (325)
Q Consensus 248 ~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~~~~~~~~~~~~ 323 (325)
.|+|+|++++++++++++|+++||+||+++++++++.++...++++||+|+||+|.||+++.++++|+++...+.+
T Consensus 245 ~V~d~e~~~a~~~l~~~~gi~~~pssga~~aaa~~~~~~~~~~~~~vv~i~tg~g~k~~~~~~~~~~~~~~~~~~~ 320 (322)
T 1z7w_A 245 QVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENAGKLFVAIFPSFGERYLSTVLFDATRKEAEAMTF 320 (322)
T ss_dssp EECHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHTSGGGTTCEEEEEECBBGGGGTTSGGGHHHHHHHHTCCC
T ss_pred EECHHHHHHHHHHHHHHcCceEchhHHHHHHHHHHHHHhcCCCCCeEEEEECCCCcccccchhhhHHHHhcccccc
Confidence 9999999999999999999999999999999999987654336789999999999999999999999988776654
|
| >2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-67 Score=481.30 Aligned_cols=309 Identities=60% Similarity=0.978 Sum_probs=274.5
Q ss_pred cchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHH
Q 020528 6 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGL 85 (325)
Q Consensus 6 ~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~al 85 (325)
..+++++...+++|||+++++|++..+.+||+|+|++|||||||||++.+++..+.++|.++++ .+||++|+||||+|+
T Consensus 4 ~~~~~~i~~~~~~TPL~~~~~l~~~~g~~i~~K~E~~~ptgSfK~R~a~~~l~~a~~~g~~~~g-~~vv~assGN~g~al 82 (313)
T 2q3b_A 4 MSIAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLIKPD-TIILEPTSGNTGIAL 82 (313)
T ss_dssp CCCCSSGGGGSCCCCEEECSSSCTTCCSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTCCCTT-CEEEEECSSHHHHHH
T ss_pred cchhhhHHHhcCCCceEECcccccccCcEEEEEehhcCCCCcHHHHHHHHHHHHHHHcCCCCCC-CEEEEeCCCHHHHHH
Confidence 3467889999999999999999887788999999999999999999999999999999987776 579999999999999
Q ss_pred HHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchH
Q 020528 86 AFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTG 165 (325)
Q Consensus 86 A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~ 165 (325)
|++|+++|++|+||||++++..|+++++.+||+|+.++...+++++.+.+++++++.+..+++++|+||.++..||.|++
T Consensus 83 A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~n~~~~~~~~~t~~ 162 (313)
T 2q3b_A 83 AMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGADGMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTA 162 (313)
T ss_dssp HHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHCTTEECCCTTTCTHHHHHHHHTHH
T ss_pred HHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHHHHhCCCEEeCCCCCChhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999754688999999999988754588999999998667899999
Q ss_pred HHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCCcccccCCCCCCccccccccCCe
Q 020528 166 PEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDE 245 (325)
Q Consensus 166 ~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~ 245 (325)
+||++|+.++||+||+|+|+||+++|++.++|+.+|.+|||+|||++++.+..++...+.+++++.+..|+.+.+..+|+
T Consensus 163 ~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~vi~ve~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~d~ 242 (313)
T 2q3b_A 163 EEVWRDTDGKVDIVVAGVGTGGTITGVAQVIKERKPSARFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDQDLVDE 242 (313)
T ss_dssp HHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEETTSCTTTTCCCCCCCCTTSCCSSCCTTCCGGGCCE
T ss_pred HHHHHHcCCCCCEEEEccCcchhHHHHHHHHHHhCCCCEEEEEeeCCCccccCCCCCCcccCCcCCCCCChhhhHhhccE
Confidence 99999997679999999999999999999999999999999999999988865555667788888777788888889999
Q ss_pred EEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhHHHH
Q 020528 246 TVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFESVK 315 (325)
Q Consensus 246 ~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~~~~ 315 (325)
++.|+|+|++++++++++++|+++||+||+++++++++.++...++++||+++|++|.||+++.+|++|+
T Consensus 243 ~~~v~d~e~~~a~~~l~~~~gi~~epssa~alaa~~~~~~~~~~~~~~vv~v~~~~g~ky~~~~~~~~~~ 312 (313)
T 2q3b_A 243 IITVGNEDALNVARRLAREEGLLVGISSGAATVAALQVARRPENAGKLIVVVLPDFGERYLSTPLFADVA 312 (313)
T ss_dssp EEEECHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHTCGGGTTCEEEEEECBBSGGGC---------
T ss_pred EEEECHHHHHHHHHHHHHHcCceEchHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccchhhhhhh
Confidence 9999999999999999999999999999999999999876542367899999999999999999998886
|
| >2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-66 Score=474.24 Aligned_cols=297 Identities=42% Similarity=0.727 Sum_probs=270.1
Q ss_pred HHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHH
Q 020528 10 KDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMA 89 (325)
Q Consensus 10 ~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a 89 (325)
+++.+.+++|||+++++|++..|.+||+|+|++|||||||||++.+++..+.++|.++++ .+||++|+||||+|+|++|
T Consensus 2 ~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGSfK~R~a~~~i~~a~~~g~~~~g-~~vv~~ssGN~g~a~A~~a 80 (303)
T 2v03_A 2 STLEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPG-DVLIEATSGNTGIALAMIA 80 (303)
T ss_dssp CSGGGGSSCCCEEECSSSSCSSSCEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTCCCTT-CEEEEECSSHHHHHHHHHH
T ss_pred cchHhhcCCCCcEECcccccccCCEEEEEeccCCCCCCcHHHHHHHHHHHHHHcCCCCCC-CEEEEECCcHHHHHHHHHH
Confidence 467888999999999999988888999999999999999999999999999999988776 6799999999999999999
Q ss_pred HHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHHH
Q 020528 90 AAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIW 169 (325)
Q Consensus 90 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~ 169 (325)
+++|++|+||||++++..|+++++.+||+|+.++...+++++.+.+++++++.+++ |++||+||.++..||.|+++||+
T Consensus 81 ~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~n~~~~~~g~~t~~~Ei~ 159 (303)
T 2v03_A 81 ALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLALEMANRGEGK-LLDQFNNPDNPYAHYTTTGPEIW 159 (303)
T ss_dssp HHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHTTSCE-ECCTTTCTHHHHHHHHTHHHHHH
T ss_pred HHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCc-ccCCcCChhhHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999997556899999999998885477 99999999987779999999999
Q ss_pred hhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCCcccccCCCCCCccccccccCCeEEEe
Q 020528 170 KGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQI 249 (325)
Q Consensus 170 ~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~v 249 (325)
+|+++.||+||+|+|+||+++|++.++|+..|.+|||+|+|++++++.. +++++.+..|+.+.+.++|+++.|
T Consensus 160 ~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~vigve~~~~~~~~~-------~~gl~~~~~~~~~~~~~~d~~~~V 232 (303)
T 2v03_A 160 QQTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEEGSSIPG-------IRRWPTEYLPGIFNASLVDEVLDI 232 (303)
T ss_dssp HHTTTCCCEEEEECSSSHHHHHHHHHHHTSSSCCEEEEEEECTTCCCTT-------CCCCCGGGCCTTCCGGGCSEEEEE
T ss_pred HHhCCCCCEEEEEeCccHhHHHHHHHHHHhCCCCEEEEEcCCCCccccc-------CCcCCCCCCCcccchHHCCEEEEE
Confidence 9996679999999999999999999999999999999999999987753 566666666777888889999999
Q ss_pred CHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhHHHHHH
Q 020528 250 SSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFESVKKE 317 (325)
Q Consensus 250 ~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~~~~~~ 317 (325)
+|+|++++++++++++|+++||+||+++++++++.++. ++++||+|+||++.||+++.+|++|+.+
T Consensus 233 ~d~e~~~a~~~l~~~~gi~~~pssa~alaa~~~~~~~~--~~~~vv~i~tg~~~ky~~~~~~~~~~~~ 298 (303)
T 2v03_A 233 HQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAAAN--PDAVVVAIICDRGDRYLSTGVFGEEHFS 298 (303)
T ss_dssp CHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHHS--TTCEEEEEECBBSGGGGGGTTTCC----
T ss_pred CHHHHHHHHHHHHHHcCceEcHHHHHHHHHHHHHHHHC--CCCeEEEEECCCCcccccchhcHHHHHh
Confidence 99999999999999999999999999999999987764 7789999999999999999999988765
|
| >1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-67 Score=479.74 Aligned_cols=305 Identities=53% Similarity=0.841 Sum_probs=273.6
Q ss_pred hhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHH
Q 020528 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAF 87 (325)
Q Consensus 8 ~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 87 (325)
+++++.+.+++|||+++++| + .|.+||+|+|++|||||||||++.+++..+.++|.++++ .+||++|+||||+|+|+
T Consensus 3 ~~~~i~~~~~~TPL~~l~~l-~-~g~~i~~K~E~~~ptGSfK~R~a~~~i~~a~~~g~~~~~-~~vv~~ssGN~g~a~A~ 79 (316)
T 1y7l_A 3 IYADNSYSIGNTPLVRLKHF-G-HNGNVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTLTKG-KEIVDATSGNTGIALAY 79 (316)
T ss_dssp CCSSGGGGCCCCCEEECSSS-S-STTCEEEEETTSSGGGBTHHHHHHHHHHHHHHTTSSCTT-CEEEESCCSHHHHHHHH
T ss_pred chhhhHHhcCCCCcEECccC-C-CCCEEEEEeccCCCCCChHHHHHHHHHHHHHHcCCCCCC-CEEEEeCCcHHHHHHHH
Confidence 45778999999999999999 6 788999999999999999999999999999999987776 68999999999999999
Q ss_pred HHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCe-EEeCCCCCCcchHhHHhchHH
Q 020528 88 MAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNS-YVLQQFENPANPKIHYETTGP 166 (325)
Q Consensus 88 ~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~n~~~~~~g~~t~~~ 166 (325)
+|+++|++|+||||++++..|+++++.+||+|+.++++.+++++.+.+++++++.+++ |+++||+||.|+..||.|+++
T Consensus 80 ~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~ 159 (316)
T 1y7l_A 80 VAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKGMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGP 159 (316)
T ss_dssp HHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHCTTTEECCCTTTCTHHHHHHHHTHHH
T ss_pred HHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999997445889999999999887556 889999999987779999999
Q ss_pred HHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhC-CCcEEEEEecCCCccccC---CC---CCCcccccCCCCCCccccc
Q 020528 167 EIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHN-PEIKLYGVEPVESAVLSG---GK---PGPHKIQGIGAGFIPGVLD 239 (325)
Q Consensus 167 Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~-~~~~vigV~~~~~~~~~~---~~---~~~~~~~gl~~~~~~~~~~ 239 (325)
||++|+.+.||+||+|+|+||+++|+++++|+++ |.+|||+|||++++.+.. |. ..++.+++|+.+..|+.+.
T Consensus 160 Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~~vi~ve~~~~~~~~~~~~g~~~~~~~~~~~gi~~~~~~~~~~ 239 (316)
T 1y7l_A 160 EIWKDTDGKVDVVVAGVGTGGSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEEVKPGPHKIQGIGAGFIPKNLD 239 (316)
T ss_dssp HHHHHTTTCEEEEEEECSSSHHHHHHHHHHHHTSCCCCEEEEEEETTSCHHHHHHHTCCCCCCCCSCTTSCCSSCCTTCC
T ss_pred HHHHHcCCCCCEEEEeCCccccHHHHHHHHHHhCCCCCEEEEEecCCCccccccccCCccCCCCcccCcCCCCCCCchhh
Confidence 9999996669999999999999999999999999 999999999999976642 21 2356678888777788888
Q ss_pred cccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhHHHH
Q 020528 240 VNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFESVK 315 (325)
Q Consensus 240 ~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~~~~ 315 (325)
++.+|+++.|+|+|++++++++++++|+++||+||+++++++++.++...++++||+|+||+|.||+++.+|++|.
T Consensus 240 ~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~epssa~~laa~~~~~~~~~~~~~~vv~i~tg~g~k~~~~~~~~~~~ 315 (316)
T 1y7l_A 240 LSIIDRVETVDSDTALATARRLMAEEGILAGISSGAAVAAADRLAKLPEFADKLIVVILPSASERYLSTALFEGIE 315 (316)
T ss_dssp GGGCCEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHTSGGGTTCEEEEEECBBCSSCCCTTTC----
T ss_pred HhhCCEEEEECHHHHHHHHHHHHHhhCCeEcHHHHHHHHHHHHHHHhcCCCCCeEEEEECCCCcccCCcccccccc
Confidence 8899999999999999999999999999999999999999999876542367899999999999999999998874
|
| >2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-66 Score=482.71 Aligned_cols=309 Identities=45% Similarity=0.760 Sum_probs=282.5
Q ss_pred cchhHHHhhhhCCCCceecccccC----CCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChh
Q 020528 6 SVIAKDVTELIGKTPLVYLNRIVD----GCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNT 81 (325)
Q Consensus 6 ~~~~~~i~~~~~~TPL~~~~~l~~----~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~ 81 (325)
.++.+++.+.+++|||+++++|++ ..|.+||+|+|++|||||||||++.+++..+.++|.+++| .+||++|+|||
T Consensus 11 ~~~~~~i~~~~g~TPL~~~~~l~~~~~~~~g~~v~~K~E~~~ptGSfKdR~a~~~l~~a~~~g~~~~g-~~vv~aSsGN~ 89 (343)
T 2pqm_A 11 KRIYHNILETIGGTPLVELHGVTEHPRIKKGTRILVKLEYFNPMSSVKDRVGFNIVYQAIKDGRLKPG-MEIIESTSGNT 89 (343)
T ss_dssp CCEESSGGGGSSCCCEEECCGGGCSTTSCTTCEEEEEEGGGSTTSBTHHHHHHHHHHHHHHHTSSCTT-CEEEEECSSHH
T ss_pred hhHHHHHHhhcCCCCeEECCccccccccccCcEEEEEeccCCCCCChHHHHHHHHHHHHHHcCCCCCC-CEEEEECCcHH
Confidence 345678999999999999999987 7788999999999999999999999999999999988776 57999999999
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCe-EEeCCCCCCcchHhH
Q 020528 82 GIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNS-YVLQQFENPANPKIH 160 (325)
Q Consensus 82 g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~n~~~~~~g 160 (325)
|+|+|++|+.+|++|+||||++++..|+++++.+||+|+.+++..+++++.+.+++++++.+.. |+++||+|+.|++.|
T Consensus 90 g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~a~~~~~~~~~~y~~~~~~~n~~n~~~g 169 (343)
T 2pqm_A 90 GIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTEGKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAH 169 (343)
T ss_dssp HHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHSTTTEEECCTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCcEEECCCCCChhHHHHH
Confidence 9999999999999999999999999999999999999999997545789999999999887555 778999999987889
Q ss_pred HhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCCcccccCCCCCCcccccc
Q 020528 161 YETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDV 240 (325)
Q Consensus 161 ~~t~~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~ 240 (325)
|.+++ ||++|+.+.||+||+|+|+||+++|++.++|+.+|.+|||+|+|++++.+..++..++.+++++.+..|+.+..
T Consensus 170 ~~t~~-Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~ 248 (343)
T 2pqm_A 170 HYTAN-EIWEDTDGEVDIVVSAVGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKGPHGIQGIGAGFIPDIYKK 248 (343)
T ss_dssp HHHHH-HHHHHTTTCEEEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEGGGCTTTTCCCCCCCCTTCCCSSCCTTCCG
T ss_pred HHHHH-HHHHHcCCCCCEEEEecCCchhHHHHHHHHHHcCCCCEEEEEecCCCcccccCCCCCeecCccCCCCCCHHHHH
Confidence 99999 99999976799999999999999999999999999999999999999888766666677889987777888888
Q ss_pred ccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhHHHHH
Q 020528 241 NLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFESVKK 316 (325)
Q Consensus 241 ~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~~~~~ 316 (325)
.++|+++.|+|+|++++++++++++|+++||+||++++++++++++...++++||+|+||+|.||+|+.+|++|..
T Consensus 249 ~~~d~~~~Vsd~e~~~a~~~l~~~~gi~~epssa~alaa~~~~~~~~~~~~~~vv~i~tg~g~ky~~~~~~~~~~~ 324 (343)
T 2pqm_A 249 EFVDEIIPIKTQDAWKMARAVVKYDGIMCGMSSGAAILAGLKEAEKPENEGKTIVIIVPSCGERYLSTDLYKIKDE 324 (343)
T ss_dssp GGCCEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHTSGGGTTCEEEEEECBBGGGGTTSSTTTSCCC
T ss_pred HhCCeEEEECHHHHHHHHHHHHHHhCCeEchhHHHHHHHHHHHHHhcCCCCCeEEEEEcCCCccccchhhhhhHhh
Confidence 8999999999999999999999999999999999999999998765423678999999999999999988887753
|
| >3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-66 Score=480.19 Aligned_cols=299 Identities=37% Similarity=0.613 Sum_probs=271.9
Q ss_pred chhHHHhhhhCCCCceecccccCC-------CCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCC
Q 020528 7 VIAKDVTELIGKTPLVYLNRIVDG-------CVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSG 79 (325)
Q Consensus 7 ~~~~~i~~~~~~TPL~~~~~l~~~-------~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssG 79 (325)
+++++|.+.+++|||+++++|++. .+.+||+|+|++|||||||||++.+++..+.++|.++++ .+||++|+|
T Consensus 4 ~~~~~i~~~ig~TPL~~~~~l~~~~~~~~~~~g~~v~~K~E~~~ptGSfK~R~a~~~l~~a~~~g~l~~~-~~vv~aSsG 82 (325)
T 3dwg_A 4 TRYDSLLQALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLLRPG-ATILEPTSG 82 (325)
T ss_dssp CEESSTGGGCSCCCEEECTTTSSBSSCBTTBCCEEEEEEETTSSTTSBTTHHHHHHHHHHHHHTTCCCTT-CEEEEECSS
T ss_pred ccccCHHHhcCCCCcEEccccchhhcccccCCCcEEEEEECCCCCCCChHHHHHHHHHHHHHHcCCCCCC-CEEEEeCCc
Confidence 456788999999999999999876 678999999999999999999999999999999988876 679999999
Q ss_pred hhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHh
Q 020528 80 NTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKI 159 (325)
Q Consensus 80 N~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~ 159 (325)
|||+|+|++|+++|++|+||||++++..|+++++.+||+|+.++...+++++.+.+++++++.++++|++||+||.++..
T Consensus 83 N~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~np~~~~~ 162 (325)
T 3dwg_A 83 NTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDS 162 (325)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEEECSTTTHHHHHHHHHHHHHHCTTSBCCCTTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999766789999999999998866999999999998768
Q ss_pred HHhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCCcccccCCCCCCccccc
Q 020528 160 HYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLD 239 (325)
Q Consensus 160 g~~t~~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~ 239 (325)
||.++++||++|+. .||+||+|+|+||+++|++.++|+..|.+|||+|||++++.+. .+++++.+..|+.+.
T Consensus 163 g~~t~~~Ei~~q~~-~~d~vv~pvG~GG~~aGi~~~~k~~~p~~~vigVe~~~~~~~~-------~~~~i~~~~~~~~~~ 234 (325)
T 3dwg_A 163 HYCGTGPELLADLP-EITHFVAGLGTTGTLMGTGRFLREHVANVKIVAAEPRYGEGVY-------ALRNMDEGFVPELYD 234 (325)
T ss_dssp HHHTHHHHHHHHCT-TCCEEEEECSSSHHHHHHHHHHHHHSTTCEEEEEEEECCGGGG-------CCSSGGGCCCCTTCC
T ss_pred HHHHHHHHHHHhcC-CCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEeeCCCcchh-------ccCcccCCcCccccc
Confidence 99999999999995 4999999999999999999999999999999999999997762 345666666788888
Q ss_pred cccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCE--EEEEeCCCCCCCcchhhhHHH
Q 020528 240 VNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKL--IVVVFPSFGERYLSSVLFESV 314 (325)
Q Consensus 240 ~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~--vv~i~t~~g~~~~~~~~~~~~ 314 (325)
++++|+++.|+|+|+++++++|++++|+++||+||++++++++++++...++++ ||+|+||+|.||+++.+|++.
T Consensus 235 ~~~~d~~~~V~d~e~~~a~~~l~~~egi~~epssa~a~aa~~~~~~~~~~~g~~~~Vv~i~~g~g~ky~~~~~~~~~ 311 (325)
T 3dwg_A 235 PEILTARYSVGAVDAVRRTRELVHTEGIFAGISTGAVLHAALGVGAGALAAGERADIALVVADAGWKYLSTGAYAGS 311 (325)
T ss_dssp GGGCSEEEEEEHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEECBBGGGGGGGTTTSSC
T ss_pred HhhCCeEEEECHHHHHHHHHHHHHHcCceechhHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCccccCchhhcCC
Confidence 899999999999999999999999999999999999999999987653224556 999999999999999556543
|
| >2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-66 Score=473.13 Aligned_cols=301 Identities=56% Similarity=0.898 Sum_probs=246.0
Q ss_pred hhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHH
Q 020528 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAF 87 (325)
Q Consensus 8 ~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 87 (325)
+++++...+++|||+++++|++..|.+||+|+|++|||||||||++.+++..+.++|.++++ .+||++|+||||+|+|+
T Consensus 4 ~~~~i~~~~~~TPL~~l~~l~~~~g~~i~~K~E~~~ptgSfK~R~a~~~l~~a~~~g~~~~g-~~vv~assGN~g~a~A~ 82 (308)
T 2egu_A 4 TVNSITELIGDTPAVKLNRIVDEDSADVYLKLEFMNPGSSVKDRIALAMIEAAEKAGKLKPG-DTIVEPTSGNTGIGLAM 82 (308)
T ss_dssp CCSCGGGGSSCCCEEECCSSSCTTSCEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTCCCTT-CEEEEECCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCeEECCcccccCCCEEEEEecccCCCCChHHHHHHHHHHHHHHcCCCCCC-CEEEEeCCCHHHHHHHH
Confidence 46788999999999999999887888999999999999999999999999999999987776 57999999999999999
Q ss_pred HHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHH
Q 020528 88 MAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPE 167 (325)
Q Consensus 88 ~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~E 167 (325)
+|+.+|++|+||||++++..|+++++.+||+|+.++...+++++.+.+++++++. ++++++||+|+.|+..||.|+++|
T Consensus 83 ~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~n~~~~~~g~~t~~~E 161 (308)
T 2egu_A 83 VAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGAQGMRGAIAKAEELVREH-GYFMPQQFKNEANPEIHRLTTGKE 161 (308)
T ss_dssp HHHHHTCEEEEEEESCSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHH-CCBCC--------------CHHHH
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHHC-cCCcCCcCCChhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999997545789999999998887 458889999999877899999999
Q ss_pred HHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCCcccccCCCCCCccccccccCCeEE
Q 020528 168 IWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETV 247 (325)
Q Consensus 168 i~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~ 247 (325)
|++|+.+.||+||+|+|+||+++|++.++|+.+|.+|||+|||++++.+..++..++.+++++.+..|+.+.+.++|+++
T Consensus 162 i~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~ 241 (308)
T 2egu_A 162 IVEQMGDQLDAFVAGVGTGGTITGAGKVLREAYPNIKIYAVEPADSPVLSGGKPGPHKIQGIGAGFVPDILDTSIYDGVI 241 (308)
T ss_dssp HHHHHTTCCCEEEEEGGGTHHHHHHHHHHHHHCTTCEEEEEEECC-----------------------CCCCCCSCSEEE
T ss_pred HHHHcCCCCCEEEEeeCCchhHHHHHHHHHHhCCCCEEEEEEeCCCccccCCCCCCcccCccCCCCCCHhHHHHhcCeEE
Confidence 99999767999999999999999999999999999999999999998877655566777888877678778888899999
Q ss_pred EeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhh
Q 020528 248 QISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLF 311 (325)
Q Consensus 248 ~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~ 311 (325)
.|+|+|++++++++++++|+++||+||+++++++++.++. .++++||+|+||+|.||+++.+|
T Consensus 242 ~v~d~e~~~a~~~l~~~~gi~~epssa~a~aa~~~~~~~~-~~~~~vv~i~tg~g~ky~~~~~~ 304 (308)
T 2egu_A 242 TVTTEEAFAAARRAAREEGILGGISSGAAIHAALKVAKEL-GKGKKVLAIIPSNGERYLSTPLY 304 (308)
T ss_dssp EECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHHH-CTTCEEEEEECBBGGGGTTSSTT
T ss_pred EECHHHHHHHHHHHHHHhCceEcHHHHHHHHHHHHHHHhc-CCCCeEEEEECCCCcccccchhc
Confidence 9999999999999999999999999999999999987654 47889999999999999998766
|
| >1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-65 Score=467.66 Aligned_cols=298 Identities=53% Similarity=0.854 Sum_probs=272.6
Q ss_pred HhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCe--EEEecCCChhHHHHHHHH
Q 020528 12 VTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGES--VLIEPTSGNTGIGLAFMA 89 (325)
Q Consensus 12 i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~--~vv~~ssGN~g~alA~~a 89 (325)
|...+++|||+++++|++..|.+||+|+|++|||||||||++.+++..+.++|.++++ + +||++|+||||+|+|++|
T Consensus 3 i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGSfK~R~a~~~l~~a~~~g~~~~g-~~~~vv~assGN~g~a~A~~a 81 (304)
T 1ve1_A 3 VEGAIGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPG-SGQVIVEPTSGNTGIGLAMIA 81 (304)
T ss_dssp GGGGCCCCCEEECCSSSCTTSCEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTSCCTT-SCCEEEESCCSHHHHHHHHHH
T ss_pred hHHhcCCCCcEECcccccccCCEEEEEecccCCCCcHHHHHHHHHHHHHHHcCCCCCC-CccEEEEeCCcHHHHHHHHHH
Confidence 5678999999999999987888999999999999999999999999999999987776 4 799999999999999999
Q ss_pred HHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHHH
Q 020528 90 AAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIW 169 (325)
Q Consensus 90 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~ 169 (325)
+++|++|+||||.+++..|+++++.+||+|+.++...+++++.+.+++++++. ++++++||+|+.++..||.|+++||+
T Consensus 82 ~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~n~~~~~g~~~t~~~Ei~ 160 (304)
T 1ve1_A 82 ASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLAAREEALRLKEEL-GAFMPDQFKNPANVRAHYETTGPELY 160 (304)
T ss_dssp HHHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHHH-TCBCCCTTTCHHHHHHHHHTHHHHHH
T ss_pred HHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHhcC-CCEeCCCCCChhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999997545889999999998874 78899999999985555899999999
Q ss_pred hhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCCcccccCCCCCCccccccccCCeEEEe
Q 020528 170 KGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQI 249 (325)
Q Consensus 170 ~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~v 249 (325)
+|+.+.+|+||+|+|+||+++|++.++|+..|.+|||+|||++++.+..+.+.++.+++|+.+..|+.+.+.++|+.+.|
T Consensus 161 ~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~vi~ve~~~~~~~~~g~~~~~~~~gl~~~~~~~~~~~~~~d~~~~V 240 (304)
T 1ve1_A 161 EALEGRIDAFVYGSGTGGTITGVGRYLKERIPHVKVIAVEPARSNVLSGGKMGQHGFQGMGPGFIPENLDLSLLDGVIQV 240 (304)
T ss_dssp HHTTTCCSEEEEECSSSHHHHHHHHHHHTTCTTCEEEEEEEGGGCTTTTCCCCCCSCTTSCCSSCCTTCCGGGCSEEEEE
T ss_pred HHcCCCCCEEEEecCCchhHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCcccCCCCCCCCChhhhhhhCCEEEEE
Confidence 99976799999999999999999999999999999999999999888766666677889988777888888899999999
Q ss_pred CHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhH
Q 020528 250 SSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFE 312 (325)
Q Consensus 250 ~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~ 312 (325)
+|+|++++++++++++|+++||+||+++++++++.++. .++++||+|+||+|.||+++.+|+
T Consensus 241 ~d~e~~~a~~~l~~~~gi~~epssa~a~aa~~~~~~~~-~~~~~vv~i~tg~g~ky~~~~~~~ 302 (304)
T 1ve1_A 241 WEEDAFPLARRLAREEGLFLGMSSGGIVWAALQVAREL-GPGKRVACISPDGGWKYLSTPLYA 302 (304)
T ss_dssp CHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHHH-CTTCEEEEEECBBSGGGTTSTTTC
T ss_pred CHHHHHHHHHHHHHHhCcEEcHHHHHHHHHHHHHHHhc-CCCCeEEEEECCCCccCCCcccCC
Confidence 99999999999999999999999999999999987653 367899999999999999985554
|
| >1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-64 Score=474.46 Aligned_cols=313 Identities=40% Similarity=0.623 Sum_probs=275.2
Q ss_pred chhHHHhhhhCCCCceecccccCCCC--ceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHH
Q 020528 7 VIAKDVTELIGKTPLVYLNRIVDGCV--ARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIG 84 (325)
Q Consensus 7 ~~~~~i~~~~~~TPL~~~~~l~~~~~--~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 84 (325)
+++++|...+++|||+++++|++.+| ++||+|+|++|||||||||++.+++..+.++|.++++ .+||++|+||||+|
T Consensus 97 ~~~~~i~~~ig~TPLv~l~~Ls~~~G~~~~v~lK~E~~nptGSfKdR~a~~~i~~a~~~G~l~~g-~tVV~aSsGN~G~A 175 (435)
T 1jbq_A 97 KILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKPG-DTIIEPTSGNTGIG 175 (435)
T ss_dssp SEESSGGGGSSCCCEEECCSHHHHTTCCSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHHTCSCTT-CEEEEECSSHHHHH
T ss_pred hHHHHHHhhCCCCCeEECcchhhHhCCCceEEEEECCCCCcCCHHHHHHHHHHHHHHHcCCCCCC-CEEEEeCCCHHHHH
Confidence 45677889999999999999986655 6999999999999999999999999999999988876 57999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhH---HHHHHHHHHHhCCCeEEeCCCCCCcchHhHH
Q 020528 85 LAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKG---AVQKAEEIRDKTPNSYVLQQFENPANPKIHY 161 (325)
Q Consensus 85 lA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~ 161 (325)
+|++|+++|++|+||||++++..|+++++.+||+|+.++...++++ ..+.+++++++.++.|+++||+|+.|++.||
T Consensus 176 lA~aaa~~Gi~~~IvmP~~~s~~k~~~l~~~GAeVv~v~~~~~~d~~~~~~~~a~~la~~~~~~~~i~q~~n~~n~~ag~ 255 (435)
T 1jbq_A 176 LALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHY 255 (435)
T ss_dssp HHHHHHHHTCEEEEEECSCCCHHHHHHHHHTTCEEEECCC-------CCHHHHHHHHHHHSTTEECCCTTTCTHHHHHHH
T ss_pred HHHHHHHcCCeEEEEeCCCCCHHHHHHHHhCCCEEEEecCCCCcchHHHHHHHHHHHHHhcCCeEEeCccCCcccHHHHH
Confidence 9999999999999999999999999999999999999986434554 4677888888876788999999999888999
Q ss_pred hchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc-----CCCCCCcccccCCCCCCcc
Q 020528 162 ETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS-----GGKPGPHKIQGIGAGFIPG 236 (325)
Q Consensus 162 ~t~~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~-----~~~~~~~~~~gl~~~~~~~ 236 (325)
.++++||++|+.+.+|+||+|+|+||+++|++++||+..|.+|||+|||.+++.+. .+....+.+++++.+.+|.
T Consensus 256 ~t~a~EI~eQl~~~~D~vVvpvGtGGtlaGi~~~lk~~~p~vrVigVep~gs~~~~~~~l~~~~~~~~~~~gig~~~~~~ 335 (435)
T 1jbq_A 256 DTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTYEVEGIGYDFIPT 335 (435)
T ss_dssp HTHHHHHHHHHTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEETTCSCSSSGGGGCCSCCCCSCCSCCCSSCCT
T ss_pred HHHHHHHHHHcCCCCCEEEEecCCcHhHHHHHHHHHHhCCCCEEEEEecCCchhhchhhhhcCCCcceeecccccCccch
Confidence 99999999999767999999999999999999999999999999999999986542 2233445677888777777
Q ss_pred ccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhHHHHH
Q 020528 237 VLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFESVKK 316 (325)
Q Consensus 237 ~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~~~~~ 316 (325)
.+++.++|+++.|+|+|+++++++|++++|+++||+||++++++++++++. .++++||+|+||+|.||++++++++|+.
T Consensus 336 ~l~~~~vd~~~~Vsd~ea~~a~r~La~~eGilve~ssgaalaaa~~~~~~~-~~g~~VV~iltd~g~ky~~~~~~~~w~~ 414 (435)
T 1jbq_A 336 VLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKAAQEL-QEGQRCVVILPDSVRNYMTKFLSDRWML 414 (435)
T ss_dssp TCCGGGCCEEEEECHHHHHHHHHHHHHHSCCCBCHHHHHHHHHHHHHGGGC-CTTCEEEEEECBBGGGGTTTTTCHHHHH
T ss_pred hhhhhhccceEEeCHHHHHHHHHHHHHHcCCEEcHHHHHHHHHHHHHHHHc-CCCCeEEEEEcCCcccccchhhccHHHH
Confidence 777788999999999999999999999999999999999999999987653 3688999999999999999999999987
Q ss_pred HhcCC
Q 020528 317 EAESM 321 (325)
Q Consensus 317 ~~~~~ 321 (325)
+..-.
T Consensus 415 ~~~~~ 419 (435)
T 1jbq_A 415 QKGFL 419 (435)
T ss_dssp HTTCC
T ss_pred hcCCC
Confidence 65433
|
| >1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-63 Score=455.71 Aligned_cols=290 Identities=53% Similarity=0.786 Sum_probs=265.7
Q ss_pred HHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHH
Q 020528 10 KDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMA 89 (325)
Q Consensus 10 ~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a 89 (325)
+.+.+.+++|||+++++|+ .+||+|+|++|||||||||++.+++..+.++|.+++ .||++|+||||+|+|++|
T Consensus 12 ~~~~~~~~~TPL~~l~~l~----~~v~~K~E~~~ptGSfK~R~a~~~l~~a~~~g~~~~---~vv~aSsGN~g~a~A~aa 84 (303)
T 1o58_A 12 HMMERLIGSTPIVRLDSID----SRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLKN---GIVEPTSGNMGIAIAMIG 84 (303)
T ss_dssp CHHHHHSCCCCEEECTTTC----TTEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTCCTT---CEEEECSSHHHHHHHHHH
T ss_pred hhhhhccCCCCeEECccCC----ceEEEEecCCCCCCChHHHHHHHHHHHHHHcCCCCC---CEEEECchHHHHHHHHHH
Confidence 4567889999999999886 579999999999999999999999999999887654 389999999999999999
Q ss_pred HHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHHH
Q 020528 90 AAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIW 169 (325)
Q Consensus 90 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~ 169 (325)
+++|++|+||||++++..|+++++.+||+|+.++++.+++++.+.+++++++. ++++++||+||.|+..||.++++||+
T Consensus 85 ~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~n~~~~~~g~~t~~~Ei~ 163 (303)
T 1o58_A 85 AKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVEKALEISRET-GAHMLNQFENPYNVYSHQFTTGPEIL 163 (303)
T ss_dssp HHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHH-CCBCCCTTTCHHHHHHHHHTHHHHHH
T ss_pred HHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhc-CeEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999997445889999999998887 68889999999987779999999999
Q ss_pred hhhCCCCCEEEEecCCchhHHHHHHHHHhhCCC-cEEEEEecCCCccccCCCCCCcccccCCCCCCccccccccCCeEEE
Q 020528 170 KGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPE-IKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQ 248 (325)
Q Consensus 170 ~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~-~~vigV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~ 248 (325)
+|+.+.||+||+|+|+||+++|++.++|+.+|. +|||+|||++++.+..+.+.++.+++++.+..|+.+.+.++|+++.
T Consensus 164 ~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~~vigve~~~~~~~~~g~~~~~~~~gi~~~~~~~~~~~~~~d~~~~ 243 (303)
T 1o58_A 164 KQMDYQIDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIGAGFVPKILDRSVIDEVIT 243 (303)
T ss_dssp HHTTTCCSEEEEECSSSHHHHHHHHHHHHHHGGGSEEEEEEETTSCTTTTCCCCCCCCTTSCCSSCCTTCCGGGCCEEEE
T ss_pred HHcCCCCCEEEEeeCCcccHHHHHHHHHHhCCCCCEEEEEecCCCccccCCCCCCeecCcCCCCCcCHHHHHHhCCeEEE
Confidence 999666999999999999999999999999999 9999999999988887777777788988777788888888999999
Q ss_pred eCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcch
Q 020528 249 ISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSS 308 (325)
Q Consensus 249 v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~ 308 (325)
|+|+|++++++++++++|+++||+||+++++++++.++. .++++||+|+||+|.||+++
T Consensus 244 V~d~e~~~a~~~l~~~~gi~~epssa~alaa~~~~~~~~-~~~~~vv~i~tg~g~ky~~~ 302 (303)
T 1o58_A 244 VEDEEAYEMARYLAKKEGLLVGISSGANVAAALKVAQKL-GPDARVVTVAPDHAERYLSI 302 (303)
T ss_dssp ECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHTS-CTTCCEEEEECBBGGGCTTT
T ss_pred ECHHHHHHHHHHHHHHcCceEcHHHHHHHHHHHHHHHHc-CCCCEEEEEECCCCcccccC
Confidence 999999999999999999999999999999999987653 36789999999999999986
|
| >3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-62 Score=477.68 Aligned_cols=310 Identities=39% Similarity=0.612 Sum_probs=280.8
Q ss_pred cchhHHHhhhhCCCCceecccccCCCC--ceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHH
Q 020528 6 SVIAKDVTELIGKTPLVYLNRIVDGCV--ARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGI 83 (325)
Q Consensus 6 ~~~~~~i~~~~~~TPL~~~~~l~~~~~--~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~ 83 (325)
.++++++...+|+|||+++++|++.+| ++||+|+|++|||||||||++.+++..+.++|.+++| .+||++|+||||+
T Consensus 48 ~~~~~~i~~~ig~TPl~~l~~l~~~~g~~~~i~~K~E~~~ptGS~K~R~a~~~i~~a~~~g~~~~g-~~vv~~ssGN~g~ 126 (527)
T 3pc3_A 48 QQITPNILEVIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQDAEEQGLLKPG-YTIIEPTSGNTGI 126 (527)
T ss_dssp CSSCSSGGGGSSCCCEEECCSHHHHTTCCSEEEEEEGGGSTTSBTTHHHHHHHHHHHHHHTCCCTT-CEEEEECSSHHHH
T ss_pred hhHHhhHHhhcCCCCcEEcchhhhhcCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHcCCCCCC-CEEEEeCCCHHHH
Confidence 456788999999999999999986555 7999999999999999999999999999999998887 5799999999999
Q ss_pred HHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChh---HHHHHHHHHHHhCCCeEEeCCCCCCcchHhH
Q 020528 84 GLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMK---GAVQKAEEIRDKTPNSYVLQQFENPANPKIH 160 (325)
Q Consensus 84 alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g 160 (325)
|+|++|+.+|++|+||||++++..|+.+++.+||+|+.++...+++ .+.+.+++++++.++.++++||+||.|++.|
T Consensus 127 a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~n~~~g 206 (527)
T 3pc3_A 127 GLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPTEAAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLAH 206 (527)
T ss_dssp HHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECTTSCTTSTTSHHHHHHHHHHHSSSEECCCTTTCTHHHHHH
T ss_pred HHHHHHHHhCCeEEEEEcCCCCHHHHHHHHHCCCEEEEeCCCCCcccHHHHHHHHHHHHHhCCCcEecCCCCCcchHHHH
Confidence 9999999999999999999999999999999999999998744454 3678888998887778899999999888999
Q ss_pred HhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc-----CCCCCCcccccCCCCCCc
Q 020528 161 YETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS-----GGKPGPHKIQGIGAGFIP 235 (325)
Q Consensus 161 ~~t~~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~-----~~~~~~~~~~gl~~~~~~ 235 (325)
|.+++.||++|+.+.||+||+|+|+||+++|++.++|+..|.+|||||||++++.+. .+....+.++||+.+.+|
T Consensus 207 ~~t~~~Ei~~q~~~~~d~vv~~vG~GG~~~G~~~~~k~~~p~~~vigve~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~p 286 (527)
T 3pc3_A 207 YDGTAAEILWQLDNKVDMIVVSAGTAGTISGIGRKIKEQVPSCQIVGVDPYGSILARPAELNKTDVQFYEVEGIGYDFPP 286 (527)
T ss_dssp HHTHHHHHHHHTTTCCSEEEEECSSSHHHHHHHHHHHHHCTTSEEEEEEETTCCCSSSGGGGCCSCCCCSCCSCCCSSCC
T ss_pred HHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEecCCcccccchhhcCCCCCceeccccCCCCCC
Confidence 999999999999778999999999999999999999999999999999999997542 223445667899988888
Q ss_pred cccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhHHHH
Q 020528 236 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFESVK 315 (325)
Q Consensus 236 ~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~~~~ 315 (325)
..+++.++|+++.|+|+|+++++++|++++|+++||+||+++++++++++.. .++++||+|+|++|.||++++++++|+
T Consensus 287 ~~~~~~~~d~~~~V~d~e~~~a~r~l~~~eGi~~~pssa~alaaal~~~~~~-~~~~~vv~i~~d~g~ryls~~~~~~~l 365 (527)
T 3pc3_A 287 TVFDDTVVDVWTKIGDSDCFPMSRRLNAEEGLLCGGSSGGAMHAALEHARKL-KKGQRCVVILPDGIRNYMTKFVSDNWM 365 (527)
T ss_dssp TTCCGGGCCEEEEECGGGTHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHTTC-CTTCEEEEEECBBGGGGTTTTTSHHHH
T ss_pred cccchhhCcEEEEECHHHHHHHHHHHHHHcCceEcHHHHHHHHHHHHHHHHc-CCCCeEEEEEcCcchhhHhhhhcHHHH
Confidence 8888999999999999999999999999999999999999999999987653 478899999999999999998888886
Q ss_pred HH
Q 020528 316 KE 317 (325)
Q Consensus 316 ~~ 317 (325)
..
T Consensus 366 ~~ 367 (527)
T 3pc3_A 366 EA 367 (527)
T ss_dssp HH
T ss_pred Hh
Confidence 65
|
| >3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-61 Score=443.87 Aligned_cols=296 Identities=21% Similarity=0.287 Sum_probs=253.8
Q ss_pred cchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHH
Q 020528 6 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGL 85 (325)
Q Consensus 6 ~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~al 85 (325)
..+++++...+++|||+++++|++.+|.+||+|+|++|||||||||++.+++..+.+.|..... ++||++|+||||+|+
T Consensus 13 ~~a~~~i~~~i~~TPL~~~~~l~~~~g~~i~~K~E~~~ptGSfK~Rga~~~i~~a~~~g~~~~~-~~vv~~SsGNhg~a~ 91 (346)
T 3l6b_A 13 EKAHINIRDSIHLTPVLTSSILNQLTGRNLFFKCELFQKTGSFKIRGALNAVRSLVPDALERKP-KAVVTHSSGNHGQAL 91 (346)
T ss_dssp HHHHHHHGGGSCCCCEECCHHHHHHHTSEEEEEEGGGSGGGBTHHHHHHHHHHTTC-----CCC-SCEEEECSSHHHHHH
T ss_pred HHHHHHHhcccCCCCeEEchhhHHHhCCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHhccccCC-CEEEEeCCCHHHHHH
Confidence 5577889999999999999999877788999999999999999999999999999887643332 569999999999999
Q ss_pred HHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchH
Q 020528 86 AFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTG 165 (325)
Q Consensus 86 A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~ 165 (325)
|++|+++|++|+||||++++..|+++++.+||+|+.+++ +++++.+.+++++++. +++|++||+||.+ +.||.|++
T Consensus 92 A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~v~~--~~~~~~~~a~~l~~~~-~~~~i~~~~np~~-~~g~~t~~ 167 (346)
T 3l6b_A 92 TYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEP--SDESRENVAKRVTEET-EGIMVHPNQEPAV-IAGQGTIA 167 (346)
T ss_dssp HHHHHHTTCCEEEEEETTSCHHHHHHHHHTTCEEEEECS--SHHHHHHHHHHHHHHH-TCEECCSSSCHHH-HHHHHHHH
T ss_pred HHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEECCCCChHH-HHHHHHHH
Confidence 999999999999999999999999999999999999986 5889999999998887 6899999999886 79999999
Q ss_pred HHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC------CCcccccCCCC--C
Q 020528 166 PEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKP------GPHKIQGIGAG--F 233 (325)
Q Consensus 166 ~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~------~~~~~~gl~~~--~ 233 (325)
+||++|+ +.+|+||+|+|+||+++|++.++|+.+|++|||+|||.+++.+. .|.+ ..+.++++... .
T Consensus 168 ~Ei~~q~-~~~d~vvv~vG~GG~~aGi~~~~k~~~p~~~vigVe~~~~~~~~~s~~~g~~~~~~~~~~tia~gl~~~~g~ 246 (346)
T 3l6b_A 168 LEVLNQV-PLVDALVVPVGGGGMLAGIAITVKALKPSVKVYAAEPSNADDCYQSKLKGKLMPNLYPPETIADGVKSSIGL 246 (346)
T ss_dssp HHHHHHS-TTCCEEEEECSSSHHHHHHHHHHHHHCTTSEEEEEEEGGGCHHHHHHHHTSCCCCSSCCCCSCGGGCSCCCT
T ss_pred HHHHHhC-CCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEecCCCHHHHHHHHcCCccccCCCCCchhhhccCCCcH
Confidence 9999999 68999999999999999999999999999999999999987542 2332 12344565422 2
Q ss_pred CccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCC-CCCCEEEEEeCCCCCCCcch
Q 020528 234 IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE-NAGKLIVVVFPSFGERYLSS 308 (325)
Q Consensus 234 ~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~i~t~~g~~~~~~ 308 (325)
..+.+.++++|+++.|+|+|+.++++++++++|+++||+||++++++++...+.. .++++||+++| ||++|+++
T Consensus 247 ~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~epssa~alaa~~~~~~~~~~~~~~~Vv~i~s-GG~~d~~~ 321 (346)
T 3l6b_A 247 NTWPIIRDLVDDIFTVTEDEIKCATQLVWERMKLLIEPTAGVGVAAVLSQHFQTVSPEVKNICIVLS-GGNVDLTS 321 (346)
T ss_dssp THHHHHHHHCCEEEEECHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHSGGGGGSCTTCCEEEEEEC-BCCCCTTG
T ss_pred HHHHHHHHcCCeEEEECHHHHHHHHHHHHHHCCcEEcHHHHHHHHHHHHhhhhhccCCCCeEEEEcC-CCCCCHHH
Confidence 2333456789999999999999999999999999999999999999986543332 46789999996 58999997
|
| >3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-59 Score=435.61 Aligned_cols=289 Identities=22% Similarity=0.254 Sum_probs=255.8
Q ss_pred HHHhhhhCCCCceec--ccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHH
Q 020528 10 KDVTELIGKTPLVYL--NRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAF 87 (325)
Q Consensus 10 ~~i~~~~~~TPL~~~--~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 87 (325)
.++.+++|+|||+++ ++|++..|.+||+|+|++|||||||||++.+++.++.++|. ++||++|+||||+|+|+
T Consensus 20 ~~v~~~~g~TPL~~~~~~~l~~~~g~~v~~K~E~~~ptgS~KdR~a~~~l~~a~~~g~-----~~vv~~SsGN~g~alA~ 94 (351)
T 3aey_A 20 PVISLLEGSTPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKAVEGGA-----QAVACASTGNTAASAAA 94 (351)
T ss_dssp CCCCSCCCCCCEEECCCCHHHHTTTCEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTC-----SEEEESCSSHHHHHHHH
T ss_pred CceecCCCCCCeeecCchhhHHHhCCeEEEEecCCCCcccHHHHHHHHHHHHHHhcCC-----CEEEEeCCCHHHHHHHH
Confidence 567889999999999 88887778899999999999999999999999999998886 78999999999999999
Q ss_pred HHHHcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHH
Q 020528 88 MAAAKGYRLIITMPAS-MSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGP 166 (325)
Q Consensus 88 ~a~~~g~~~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~ 166 (325)
+|+++|++|+||||++ ++..|+++++.+||+|+.+++ +++++.+.+++++++. +++|+++ +|+.+ +.||.++++
T Consensus 95 ~a~~~G~~~~iv~p~~~~~~~k~~~~~~~GA~V~~v~~--~~~~~~~~a~~l~~~~-~~~~~~~-~n~~~-~~g~~t~~~ 169 (351)
T 3aey_A 95 YAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVEG--NFDDALRLTQKLTEAF-PVALVNS-VNPHR-LEGQKTLAF 169 (351)
T ss_dssp HHHHHTSEEEEEEETTCSCHHHHHHHHHTTCEEEEEES--CHHHHHHHHHHHHHHS-SEEECST-TCHHH-HHHHHHHHH
T ss_pred HHHHcCCCEEEEECCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CcEecCC-CCccc-eeeeeeHHH
Confidence 9999999999999998 999999999999999999996 5899999999998887 5888887 78877 689999999
Q ss_pred HHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCC------CcEEEEEecCCCccccCCCCC---CcccccCCCCCCccc
Q 020528 167 EIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNP------EIKLYGVEPVESAVLSGGKPG---PHKIQGIGAGFIPGV 237 (325)
Q Consensus 167 Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~------~~~vigV~~~~~~~~~~~~~~---~~~~~gl~~~~~~~~ 237 (325)
||++|+...||+||+|+|+||+++|++.++|+.++ .+||++|||.+++++..+.+. .+.+++++.+. |.+
T Consensus 170 Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~G~~~~~~~vigve~~~~~~~~~g~~~~~~~t~a~gl~~~~-~~~ 248 (351)
T 3aey_A 170 EVVDELGDAPHYHALPVGNAGNITAHWMGYKAYHALGKAKRLPRMLGFQAAGAAPLVLGRPVERPETLATAIRIGN-PAS 248 (351)
T ss_dssp HHHHHHSSCCSEEEEECSSSHHHHHHHHHHHHHHHHTSCSSCCEEEEEEEGGGCHHHHTSCCSSCCCSCGGGCCSS-CTT
T ss_pred HHHHHcCCCCCEEEEecCchHHHHHHHHHHHHHHhccccCCCCeEEEEecCCCChhhcCcccCCccchhHhhcCCC-CCC
Confidence 99999976799999999999999999999998764 699999999999877555432 34557776554 222
Q ss_pred c------ccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCC-CCCCEEEEEeCCCCCCCcchh
Q 020528 238 L------DVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE-NAGKLIVVVFPSFGERYLSSV 309 (325)
Q Consensus 238 ~------~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~i~t~~g~~~~~~~ 309 (325)
+ .+++.|+++.|+|+|++++++++++++|+++||+||+++++++++.+++. .++++||+|+||++.||++++
T Consensus 249 ~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~epssa~alaa~~~~~~~~~~~~~~~vv~i~tg~~~k~~~~~ 327 (351)
T 3aey_A 249 WQGAVRAKEESGGVIEAVTDEEILFAYRYLAREEGIFCEPASAAAMAGVFKLLREGRLEPESTVVLTLTGHGLKDPATA 327 (351)
T ss_dssp HHHHHHHHHHHTCEEEEECHHHHHHHHHHHHHHTCCCBCHHHHHHHHHHHHHHHTTCSCTTCEEEEEECBBGGGCHHHH
T ss_pred HHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhCCEEECchHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCCHHHH
Confidence 2 23567899999999999999999999999999999999999999887654 468899999999999998873
|
| >2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-59 Score=436.74 Aligned_cols=290 Identities=22% Similarity=0.262 Sum_probs=255.8
Q ss_pred HHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHH
Q 020528 10 KDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMA 89 (325)
Q Consensus 10 ~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a 89 (325)
.++.+++|+|||+++++|++..|.+||+|+|++|||||||||++.+++.++.++|. .+||++|+||||+|+|++|
T Consensus 30 ~~v~~~~g~TPL~~~~~l~~~~g~~i~~K~E~~~ptgSfKdR~a~~~l~~a~~~g~-----~~vv~aSsGN~g~alA~~a 104 (360)
T 2d1f_A 30 TPVTLLEGGTPLIAATNLSKQTGCTIHLKVEGLNPTGSFKDRGMTMAVTDALAHGQ-----RAVLCASTGNTSASAAAYA 104 (360)
T ss_dssp CCCCCCCCCCCEEECHHHHHHHSSEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTC-----SEEEECCSSHHHHHHHHHH
T ss_pred CccccccCCCCCeechhhHHHhCCeEEEEECCCCCCcCHHHHHHHHHHHHHHHCCC-----CEEEEeCCcHHHHHHHHHH
Confidence 46788899999999999987677899999999999999999999999999998886 7899999999999999999
Q ss_pred HHcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHH
Q 020528 90 AAKGYRLIITMPAS-MSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEI 168 (325)
Q Consensus 90 ~~~g~~~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei 168 (325)
+++|++|+||||++ ++..|+++++.+||+|+.+++ +++++.+.+++++++.++.+++++ +|+.+ +.||.++++||
T Consensus 105 ~~~G~~~~i~~p~~~~~~~k~~~~~~~GA~v~~v~~--~~~~~~~~a~~l~~~~~~~~~i~~-~n~~~-~~g~~t~~~Ei 180 (360)
T 2d1f_A 105 ARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQIDG--NFDDCLELARKMAADFPTISLVNS-VNPVR-IEGQKTAAFEI 180 (360)
T ss_dssp HHHTCEEEEEECSSCCCHHHHHHHHHTTCEEEEBSS--CHHHHHHHHHHHHHHCTTEEECST-TCHHH-HHHHTHHHHHH
T ss_pred HHcCCcEEEEEcCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhcCCeEEcCC-CChhh-hhhHHHHHHHH
Confidence 99999999999998 999999999999999999996 589999999999988755888888 78877 68999999999
Q ss_pred HhhhCCCCCEEEEecCCchhHHHHHHHHHhhCC------CcEEEEEecCCCccccCCCCC---CcccccCCCCCCcccc-
Q 020528 169 WKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNP------EIKLYGVEPVESAVLSGGKPG---PHKIQGIGAGFIPGVL- 238 (325)
Q Consensus 169 ~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~------~~~vigV~~~~~~~~~~~~~~---~~~~~gl~~~~~~~~~- 238 (325)
++|+...||+||+|+|+||+++|++.++|+..+ .+||++|||.+++++..+.+. .+.+++|+.+. |..+
T Consensus 181 ~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~G~~~~~~~vigve~~~~~~~~~g~~~~~~~t~a~gl~~~~-~~~~~ 259 (360)
T 2d1f_A 181 VDVLGTAPDVHALPVGNAGNITAYWKGYTEYHQLGLIDKLPRMLGTQAAGAAPLVLGEPVSHPETIATAIRIGS-PASWT 259 (360)
T ss_dssp HHHHSSCCSEEEEECSSSHHHHHHHHHHHHHHHTTSCSSCCEEEEEEEGGGCHHHHSSCCSSCCCSCGGGCCSS-CTTHH
T ss_pred HHHcCCCCCEEEEeCCchHHHHHHHHHHHHHHhccccccCceEEEEecCCCCHHhcCCccCCccchHHHhCCCC-CCcHH
Confidence 999976799999999999999999999998754 689999999999877555432 24457776654 2222
Q ss_pred -----ccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCC-CCCCEEEEEeCCCCCCCcchh
Q 020528 239 -----DVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE-NAGKLIVVVFPSFGERYLSSV 309 (325)
Q Consensus 239 -----~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~i~t~~g~~~~~~~ 309 (325)
.+++.|+++.|+|+|++++++++++++|+++||+||+++++++++.+++. .++++||+++||++.||++++
T Consensus 260 ~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~eGi~~epssa~alaa~~~~~~~~~~~~~~~vv~i~tg~~~k~~~~~ 336 (360)
T 2d1f_A 260 SAVEAQQQSKGRFLAASDEEILAAYHLVARVEGVFVEPASAASIAGLLKAIDDGWVARGSTVVCTVTGNGLKDPDTA 336 (360)
T ss_dssp HHHHHHHHHTCEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHHTSSCTTCEEEEEECBBGGGCHHHH
T ss_pred HHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCeeECchHHHHHHHHHHHHHhCCCCCCCeEEEEeCCCCcCCHHHH
Confidence 23567899999999999999999999999999999999999999887543 468899999999999998873
|
| >4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-58 Score=431.38 Aligned_cols=297 Identities=19% Similarity=0.180 Sum_probs=255.3
Q ss_pred HhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHHH
Q 020528 12 VTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAA 91 (325)
Q Consensus 12 i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~ 91 (325)
....+++|||+++++|++.+|.+||+|+|++|||||||||++.+++..+.++|. ++||++|+||||+|+|++|++
T Consensus 40 ~~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGSfK~Rga~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~aa~~ 114 (364)
T 4h27_A 40 GEPLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQGC-----AHFVCSSSGNAGMAAAYAARQ 114 (364)
T ss_dssp -CCSSCCCCEEEEHHHHHHHTSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTC-----CEEEECCSSHHHHHHHHHHHH
T ss_pred cCCCCCcCCeEEChhhHHHhCCEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcCC-----CEEEEeCCChHHHHHHHHHHH
Confidence 456778999999999987778899999999999999999999999999998876 789999999999999999999
Q ss_pred cCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHHHhh
Q 020528 92 KGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKG 171 (325)
Q Consensus 92 ~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q 171 (325)
+|++|+||||++++..|+++++.+||+|+.+++ +++++.+.+++++++.++++|++||+|+.+ +.||.+++.||++|
T Consensus 115 ~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~--~~~~a~~~a~~l~~~~~~~~~~~~~~np~~-~~G~~t~~~Ei~~q 191 (364)
T 4h27_A 115 LGVPATIVVPGTTPALTIERLKNEGATVKVVGE--LLDEAFELAKALAKNNPGWVYIPPFDDPLI-WEGHASIVKELKET 191 (364)
T ss_dssp HTCCEEEEEETTSCHHHHHHHHTTTCEEEEECS--STTHHHHHHHHHHHHSTTEEEECSSCSHHH-HHHHTHHHHHHHHH
T ss_pred hCCceEEEECCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhCCCeEEeCCCCCHHH-HHHHHHHHHHHHHH
Confidence 999999999999999999999999999999985 688999999999988768999999999987 78999999999999
Q ss_pred hCCCCCEEEEecCCchhHHHHHHHHHhhC-CCcEEEEEecCCCcccc----CCCC-----CCcccccCCCCCCcc---cc
Q 020528 172 TGGKIDALVSGIGTGGTVTGAGKYLKEHN-PEIKLYGVEPVESAVLS----GGKP-----GPHKIQGIGAGFIPG---VL 238 (325)
Q Consensus 172 l~~~~D~iv~pvG~Gg~~aGi~~~~k~~~-~~~~vigV~~~~~~~~~----~~~~-----~~~~~~gl~~~~~~~---~~ 238 (325)
+.+.||+||+|+|+||+++|++.++|+.+ |+++||+|||.+++++. .+.+ ..+.+++|+.+.++. .+
T Consensus 192 ~~~~~D~vvvpvG~GG~~aGi~~~~k~~~~p~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~tia~gl~~~~~~~~~~~~ 271 (364)
T 4h27_A 192 LWEKPGAIALSVGGGGLLCGVVQGLQEVGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAKALGVKTVGAQALKL 271 (364)
T ss_dssp CSSCCSEEEEECSSSHHHHHHHHHHHHTTCTTCCEEEEEETTSCHHHHHHHHTSCCCCSCCCCSCGGGCCSSCCHHHHHH
T ss_pred hCCCCCEEEEcCCccHHHHHHHHHHHHhCCCCCeEEEEecCCChHHHHHHHCCCcccCCCCCcHHHHhCCCCCcHHHHHH
Confidence 97679999999999999999999999987 88999999999998763 2322 233456776654332 22
Q ss_pred ccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHH-----HHHhcCCC--CCCEEEEEeCCCCCCCcchhhh
Q 020528 239 DVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAI-----QIAKRPEN--AGKLIVVVFPSFGERYLSSVLF 311 (325)
Q Consensus 239 ~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~-----~~~~~~~~--~~~~vv~i~t~~g~~~~~~~~~ 311 (325)
.+++.+..+.|+|+|+++++++|++++|+++||+||+++++++ ++.+++.. ++++||+|+|+|.+.+++. +
T Consensus 272 ~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~eps~aaalaa~~~~k~~~l~~~g~~~~~~~~Vv~v~tGG~~~d~~~--l 349 (364)
T 4h27_A 272 FQEHPIFSEVISDQEAVAAIEKFVDDEKILVEPACGAALAAVYSHVIQKLQLEGNLRTPLPSLVVIVCGGSNISLAQ--L 349 (364)
T ss_dssp HTTSCEEEEEECHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHHHHHHHTTSSCSSCCEEEEEECBCSSCCHHH--H
T ss_pred HHhcCCEEEEECHHHHHHHHHHHHHHCCCeEcccHHHHHHHHHhhhhHHhhhccCcCCCCCeEEEEECCCCCCCHHH--H
Confidence 3455677889999999999999999999999999999999985 55555542 2689999998877776664 6
Q ss_pred HHHHHHh
Q 020528 312 ESVKKEA 318 (325)
Q Consensus 312 ~~~~~~~ 318 (325)
..|.+.-
T Consensus 350 ~~~~~~~ 356 (364)
T 4h27_A 350 RALKEQL 356 (364)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 6666553
|
| >2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-59 Score=434.06 Aligned_cols=288 Identities=22% Similarity=0.247 Sum_probs=255.0
Q ss_pred HHHhhhhCCCCceecccccCCCCce--EEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHH
Q 020528 10 KDVTELIGKTPLVYLNRIVDGCVAR--IAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAF 87 (325)
Q Consensus 10 ~~i~~~~~~TPL~~~~~l~~~~~~~--l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 87 (325)
.++.+++|+|||+++++|++..|.+ ||+|+|++|||||||||++.+++.++.++|. .+||++|+||||+|+|+
T Consensus 22 ~~v~~~~g~TPL~~~~~l~~~~g~~~~i~~K~E~~~ptGS~KdR~a~~~l~~a~~~g~-----~~vv~~SsGN~g~alA~ 96 (352)
T 2zsj_A 22 PIVTLYEGNTPLIEADNLARAIGFKGKIYLKYEGLNPTGSFKDRGMTLAISKAVEAGK-----RAVICASTGNTSASAAA 96 (352)
T ss_dssp CCCCCCCCCCCEEECHHHHHHHTCCSEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTC-----CEEEECCSSHHHHHHHH
T ss_pred CceecccCCCCCeehHHHHHHhCCCceEEEEECCCCCCccHHHHHHHHHHHHHHhcCC-----CEEEEeCCchHHHHHHH
Confidence 5678899999999999988766777 9999999999999999999999999998886 78999999999999999
Q ss_pred HHHHcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHH
Q 020528 88 MAAAKGYRLIITMPAS-MSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGP 166 (325)
Q Consensus 88 ~a~~~g~~~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~ 166 (325)
+|+++|++|+||||++ ++..|+++++.+||+|+.+++ +++++.+.+++++++. +++|+++ +|+.+ +.||.++++
T Consensus 97 ~a~~~G~~~~i~~p~~~~~~~k~~~~~~~GA~v~~v~~--~~~~~~~~a~~l~~~~-~~~~~~~-~n~~~-~~g~~t~~~ 171 (352)
T 2zsj_A 97 YAARAGLRAYVLLPKGAVAIGKLSQAMIYGAKVLAIQG--TFDDALNIVRKIGENF-PVEIVNS-VNPYR-IEGQKTAAF 171 (352)
T ss_dssp HHHHHTCEEEEEEEGGGCCHHHHHHHHHTTCEEEEESS--CHHHHHHHHHHHHHHS-SEEECST-TCTHH-HHHHTHHHH
T ss_pred HHHhcCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHHc-CcEECCC-CCcch-hhhHhHHHH
Confidence 9999999999999998 999999999999999999996 5899999999998887 5888887 78887 689999999
Q ss_pred HHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCC------CcEEEEEecCCCccccCCCCC---CcccccCCCCCCccc
Q 020528 167 EIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNP------EIKLYGVEPVESAVLSGGKPG---PHKIQGIGAGFIPGV 237 (325)
Q Consensus 167 Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~------~~~vigV~~~~~~~~~~~~~~---~~~~~gl~~~~~~~~ 237 (325)
||++|+...||+||+|+|+||+++|++.++|+..+ .+||++|||.+++++..+.+. .+.+++|+.+. |..
T Consensus 172 Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~G~~~~~~~vigve~~~~~~~~~g~~~~~~~t~a~gl~~~~-~~~ 250 (352)
T 2zsj_A 172 EICDTLGEAPDYHFIPVGNAGNITAYWKGFKIYYEEGKITKLPRMMGWQAEGAAPIVKGYPIKNPQTIATAIKIGN-PYS 250 (352)
T ss_dssp HHHHHHSSCCSEEEEECSSSHHHHHHHHHHHHHHHTTSCSSCCEEEEEEETTBCHHHHTSCCSSCCCSCGGGCCSS-CTT
T ss_pred HHHHHcCCCCCEEEEeCCCcHHHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCcHHhcCCccCCCcchhHHhcCCC-CCc
Confidence 99999976799999999999999999999998754 689999999999877555432 34567776554 222
Q ss_pred c------ccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCC-CCCCEEEEEeCCCCCCCcch
Q 020528 238 L------DVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE-NAGKLIVVVFPSFGERYLSS 308 (325)
Q Consensus 238 ~------~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~i~t~~g~~~~~~ 308 (325)
+ .+++.|+++.|+|+|++++++++++++|+++||+||+++++++++.+++. .++++||+|+||++.||+++
T Consensus 251 ~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~epssa~alaa~~~~~~~~~~~~~~~vv~i~tg~~~k~~~~ 328 (352)
T 2zsj_A 251 WKSALKAAQESGGKIDAVSDSEILYAYKLIASTEGVFCEPASAASVAGLIKLVREGFFKGGEVVTCTLTGNGLKDPDT 328 (352)
T ss_dssp HHHHHHHHHHHTCEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHTTCCCSCCEEEEEECBBGGGCHHH
T ss_pred HHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhCCeeECchHHHHHHHHHHHHHhCCCCCCCeEEEEeCCCCccChHH
Confidence 2 23567899999999999999999999999999999999999999887654 46889999999999999987
|
| >1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-58 Score=430.88 Aligned_cols=300 Identities=18% Similarity=0.166 Sum_probs=254.3
Q ss_pred hHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHH
Q 020528 9 AKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFM 88 (325)
Q Consensus 9 ~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~ 88 (325)
+.++...+++|||+++++|++..|.+||+|+|++|||||||||++.+++..+.++|. .+||++|+||||+|+|++
T Consensus 37 ~p~~~~~~~~TPL~~l~~l~~~~g~~i~~K~E~~~ptGSfKdRga~~~l~~a~~~g~-----~~vv~aSsGN~g~alA~a 111 (372)
T 1p5j_A 37 MMSGEPLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQGC-----AHFVCSSAGNAGMAAAYA 111 (372)
T ss_dssp ---CCCSSCCCCEEEEHHHHHHHTSCEEEECGGGSGGGBTTHHHHHHHHHHHHHTTC-----CEEEECCSSHHHHHHHHH
T ss_pred cccccCCCCCCCceEcHhhHHHhCCEEEEEEcCCCCCCChHHHHHHHHHHHHHHcCC-----CEEEEeCCCHHHHHHHHH
Confidence 344567889999999999887667899999999999999999999999999988774 789999999999999999
Q ss_pred HHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHH
Q 020528 89 AAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEI 168 (325)
Q Consensus 89 a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei 168 (325)
|+++|++|+||||++++..|+++++.+||+|+.+++ +++++.+.+++++++.++++|++||+|+.+ +.||.|+++||
T Consensus 112 a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~a~~~a~~l~~~~~~~~~v~~~~n~~~-~~G~~t~~~Ei 188 (372)
T 1p5j_A 112 ARQLGVPATIVVPGTTPALTIERLKNEGATCKVVGE--LLDEAFELAKALAKNNPGWVYIPPFDDPLI-WEGHASIVKEL 188 (372)
T ss_dssp HHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEECCS--CHHHHHHHHHHHHHHSTTEEECCSSCCHHH-HHHHTHHHHHH
T ss_pred HHHcCCcEEEEECCCCCHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhcCCcEEeCCCCCHHH-HhhHHHHHHHH
Confidence 999999999999999999999999999999999986 689999999999988558999999999987 68999999999
Q ss_pred HhhhCCCCCEEEEecCCchhHHHHHHHHHhhC-CCcEEEEEecCCCcccc----CCCCC-----CcccccCCCCCCcc--
Q 020528 169 WKGTGGKIDALVSGIGTGGTVTGAGKYLKEHN-PEIKLYGVEPVESAVLS----GGKPG-----PHKIQGIGAGFIPG-- 236 (325)
Q Consensus 169 ~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~-~~~~vigV~~~~~~~~~----~~~~~-----~~~~~gl~~~~~~~-- 236 (325)
++|+...||+||+|+|+||+++|++.++|+.+ |.+|||+|||++++.+. .+.+. .+.+++|+.+.++.
T Consensus 189 ~~ql~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~p~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~tia~gl~~~~~~~~~ 268 (372)
T 1p5j_A 189 KETLWEKPGAIALSVGGGGLLCGVVQGLQECGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAKALGVKTVGSQA 268 (372)
T ss_dssp HHHCSSCCSEEEEECSSSHHHHHHHHHHHHTTCTTCCEEEEEETTSCHHHHHHHHTSCCCCSCCCCSCGGGCCSSCCHHH
T ss_pred HHHcCCCCCEEEEecCCchHHHHHHHHHHHhCCCCceEEEEecCCChHHHHHHHcCCceecCCCceeecccCCCCCCHHH
Confidence 99996669999999999999999999999986 88999999999987663 23221 34556776655432
Q ss_pred -ccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHH-----HHhcCC--CCCCEEEEEeCCCCCCCcch
Q 020528 237 -VLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQ-----IAKRPE--NAGKLIVVVFPSFGERYLSS 308 (325)
Q Consensus 237 -~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~-----~~~~~~--~~~~~vv~i~t~~g~~~~~~ 308 (325)
.+.+...++++.|+|+|++++++++++++|+++||+||++++++++ +.+.+. .++++||+|+||+++.+ .
T Consensus 269 ~~~~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~epssa~alaa~~~~~~~~l~~~g~~~~~~~~Vv~i~tgg~~~~--~ 346 (372)
T 1p5j_A 269 LKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVEPACGAALAAVYSHVIQKLQLEGNLRTPLPSLVVIVCGGSNIS--L 346 (372)
T ss_dssp HHHHHHSCEEEEEECHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHTTHHHHHHHTTSSCSSCSCEEEECCBCSSCC--H
T ss_pred HHHHhhcCCEEEEECHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHhhHHHHhhccccCCCCCeEEEEECCCCCCC--H
Confidence 2234567889999999999999999999999999999999999874 323332 36789999999876444 4
Q ss_pred hhhHHHHHHh
Q 020528 309 VLFESVKKEA 318 (325)
Q Consensus 309 ~~~~~~~~~~ 318 (325)
..+++|.+..
T Consensus 347 ~~~~~~~~~~ 356 (372)
T 1p5j_A 347 AQLRALKEQL 356 (372)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4577776553
|
| >2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-58 Score=422.49 Aligned_cols=292 Identities=22% Similarity=0.192 Sum_probs=250.4
Q ss_pred hhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCC
Q 020528 15 LIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGY 94 (325)
Q Consensus 15 ~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~ 94 (325)
.+++|||+++++|++..|.+||+|+|++|||||||||++.+++..+.++|. .+||++|+||||+|+|++|+++|+
T Consensus 4 ~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~-----~~vv~~ssGN~g~alA~~a~~~G~ 78 (318)
T 2rkb_A 4 FHVVTPLLESWALSQVAGMPVFLKCENVQPSGSFKIRGIGHFCQEMAKKGC-----RHLVCSSGGNAGIAAAYAARKLGI 78 (318)
T ss_dssp SSCCCCEEEEHHHHHHHTSCEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTC-----CEEEECCCSHHHHHHHHHHHHHTC
T ss_pred CCccCCceehHhhHHHhCCeEEEEecCCCCCCCHHHHHHHHHHHHHHHcCC-----CEEEEECCchHHHHHHHHHHHcCC
Confidence 568999999999887667899999999999999999999999999998774 789999999999999999999999
Q ss_pred eEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHHHhhhCC
Q 020528 95 RLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGG 174 (325)
Q Consensus 95 ~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~ql~~ 174 (325)
+|+||||++++..|+++++.+||+|+.+++ +++++.+.+++++++. +++|++||+|+.+ +.||.++++||++|++.
T Consensus 79 ~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~n~~~-~~g~~t~~~Ei~~q~~~ 154 (318)
T 2rkb_A 79 PATIVLPESTSLQVVQRLQGEGAEVQLTGK--VWDEANLRAQELAKRD-GWENVPPFDHPLI-WKGHASLVQELKAVLRT 154 (318)
T ss_dssp CEEEEECTTCCHHHHHHHHHTTCEEEECCS--SHHHHHHHHHHHHHST-TEEECCSSCSHHH-HHHHHHHHHHHHHHSSS
T ss_pred CEEEEECCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEeCCCCChhh-ccchhHHHHHHHHhcCC
Confidence 999999999999999999999999999985 6899999999998875 7999999999987 68899999999999966
Q ss_pred CCCEEEEecCCchhHHHHHHHHHhhC-CCcEEEEEecCCCcccc----CCCC-----CCcccccCCCCCCcc-c--cccc
Q 020528 175 KIDALVSGIGTGGTVTGAGKYLKEHN-PEIKLYGVEPVESAVLS----GGKP-----GPHKIQGIGAGFIPG-V--LDVN 241 (325)
Q Consensus 175 ~~D~iv~pvG~Gg~~aGi~~~~k~~~-~~~~vigV~~~~~~~~~----~~~~-----~~~~~~gl~~~~~~~-~--~~~~ 241 (325)
.||+||+|+|+||+++|++.++|+.+ |.+|||+|+|++++++. .+.+ ..+.+++|+.+.++. . +.+.
T Consensus 155 ~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~~vi~ve~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~ 234 (318)
T 2rkb_A 155 PPGALVLAVGGGGLLAGVVAGLLEVGWQHVPIIAMETHGAHCFNAAITAGKLVTLPDITSVAKSLGAKTVAARALECMQV 234 (318)
T ss_dssp CCSEEEEECSSSHHHHHHHHHHHHHTCTTSCEEEEEETTBCHHHHHHHHTSCCBCSCCCSSCGGGCCSBCCHHHHHHHHH
T ss_pred CCCEEEEeeCCCcHHHHHHHHHHHhCCCCCEEEEEecCCChHHHHHHHcCCcccCCCCCceecccCCCCCCHHHHHHHHH
Confidence 79999999999999999999999986 88999999999997653 2322 134556777655442 2 2335
Q ss_pred cCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHH-----HHhcCC--CCCCEEEEEeCCCCCCCcchhhhHHH
Q 020528 242 LLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQ-----IAKRPE--NAGKLIVVVFPSFGERYLSSVLFESV 314 (325)
Q Consensus 242 ~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~-----~~~~~~--~~~~~vv~i~t~~g~~~~~~~~~~~~ 314 (325)
..++.+.|+|+|++++++++++++|+++||+||++++++++ +.+.+. .++++||+|+||++..+++. +.++
T Consensus 235 ~~~~~~~v~d~e~~~a~~~l~~~~gi~~eps~a~a~aa~~~~~~~~~~~~g~~~~~~~~vv~i~tgg~~~~~~~--l~~~ 312 (318)
T 2rkb_A 235 CKIHSEVVEDTEAVSAVQQLLDDERMLVEPACGAALAAIYSGLLRRLQAEGCLPPSLTSVVVIVCGGNNINSRE--LQAL 312 (318)
T ss_dssp SCEEEEEECHHHHHHHHHHHHHHHCBCCCHHHHHHHHHHHTSHHHHHHHTTSSCSSCSCEEEEECBCSSCCHHH--HHHH
T ss_pred cCCEEEEECHHHHHHHHHHHHHhcCcEEchhHHHHHHHHHHhhHHHHhhccccCCCCCeEEEEECCCCCCCHHH--HHHH
Confidence 56789999999999999999999999999999999999873 223332 36789999999887777664 6666
Q ss_pred HHH
Q 020528 315 KKE 317 (325)
Q Consensus 315 ~~~ 317 (325)
.+.
T Consensus 313 ~~~ 315 (318)
T 2rkb_A 313 KTH 315 (318)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-59 Score=427.00 Aligned_cols=284 Identities=21% Similarity=0.263 Sum_probs=247.2
Q ss_pred ccchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHH
Q 020528 5 KSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIG 84 (325)
Q Consensus 5 ~~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 84 (325)
...+++++...+++|||+++++|++..|.+||+|+|++|||||||||++.+++.++. + ..+||++|+||||+|
T Consensus 7 i~~a~~~i~~~~~~TPL~~~~~l~~~~g~~i~~K~E~~~ptgSfKdR~a~~~i~~l~--~-----~~~vv~~ssGN~g~a 79 (311)
T 1ve5_A 7 LYAAFRRIAPYTHRTPLLTSRLLDGLLGKRLLLKAEHLQKTGSFKARGALSKALALE--N-----PKGLLAVSSGNHAQG 79 (311)
T ss_dssp HHHHHHHHGGGSCCCCEEECHHHHHHTTSEEEEEEGGGSGGGBTHHHHHHHHHHHSS--S-----CCCEEEECSSHHHHH
T ss_pred HHHHHHHHhccCCCCCceechhhHHhhCCeEEEEecCCCCcCCcHHHHHHHHHHHhc--C-----CCeEEEECCCcHHHH
Confidence 345778899999999999999988767789999999999999999999999999876 2 257999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhch
Q 020528 85 LAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETT 164 (325)
Q Consensus 85 lA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~ 164 (325)
+|++|+++|++|+||||++++..|+++++.+||+|+.+++ +++++.+.+++++++. +++|++||+|+.+ +.||.++
T Consensus 80 lA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~n~~~-~~g~~t~ 155 (311)
T 1ve5_A 80 VAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDRGV--TAKNREEVARALQEET-GYALIHPFDDPLV-IAGQGTA 155 (311)
T ss_dssp HHHHHHHHTCCEEEECCCC--CCHHHHHHHTTCEEECTTC--CTTTHHHHHHHHHHHH-CCEECCSSSSHHH-HHHHHHH
T ss_pred HHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CcEecCCCCCcch-hhhccHH
Confidence 9999999999999999999999999999999999999986 4788999999998876 7899999999987 6899999
Q ss_pred HHHHHhhhC---CCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC------CCcccccCCC
Q 020528 165 GPEIWKGTG---GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKP------GPHKIQGIGA 231 (325)
Q Consensus 165 ~~Ei~~ql~---~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~------~~~~~~gl~~ 231 (325)
++||++|+. +.+|+||+|+|+||+++|+++++|+.+|.+|||+|+|++++.+. .|.+ ..+..+++..
T Consensus 156 ~~Ei~~q~~~~~~~~d~vvvpvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~~~~g~~~~~~~~~~~i~~gl~~ 235 (311)
T 1ve5_A 156 GLELLAQAGRMGVFPGAVLAPVGGGGLLAGLATAVKALSPTTLVLGVEPEAADDAKRSLEAGRILRLEAPPRTRADGVRT 235 (311)
T ss_dssp HHHHHHHHHHHTCCCSEEEEECSSSHHHHHHHHHHHHHCTTSEEEEEEEGGGCHHHHHHHHTSCCCCSSCCCCSCGGGCC
T ss_pred HHHHHHHHHhcCCCCCEEEEccCchHHHHHHHHHHHHhCCCCEEEEEEeCCChHHHHHHHcCCccccCCCCCeeeCcCCC
Confidence 999999995 67999999999999999999999999999999999999987652 2332 2334566654
Q ss_pred CC---CccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCC
Q 020528 232 GF---IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFG 302 (325)
Q Consensus 232 ~~---~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g 302 (325)
+. .++.+.++++|+++.|+|+|++++++++++++|+++||+||+++++++++.++ . +++||+|+||++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~epssa~alaa~~~~~~~--~-~~~vv~i~tgg~ 306 (311)
T 1ve5_A 236 LSLGERTFPILRERVDGILTVSEEALLEAERLLFTRTKQVVEPTGALPLAAVLEHGAR--L-PQTLALLLSGGN 306 (311)
T ss_dssp SSCCTTTHHHHHHHCCEEEEECHHHHHHHHHHHHHHTCBCCCGGGGHHHHHHHHHGGG--S-CSEEEEEECBCC
T ss_pred CCccHHHHHHHHhcCCEEEEECHHHHHHHHHHHHHhcCceEchHHHHHHHHHHhhhhc--c-CCEEEEEECCCC
Confidence 32 23334567889999999999999999999999999999999999999998765 4 789999998754
|
| >1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-59 Score=430.80 Aligned_cols=295 Identities=19% Similarity=0.287 Sum_probs=252.2
Q ss_pred cchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHH-hCCCCCCCeEEEecCCChhHHH
Q 020528 6 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEE-KGLIRPGESVLIEPTSGNTGIG 84 (325)
Q Consensus 6 ~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~-~g~~~~g~~~vv~~ssGN~g~a 84 (325)
..+++++...+++|||+++++|++..|.+||+|+|++|||||||||++.+++..+.+ ++. ++||++|+||||+|
T Consensus 14 ~~a~~~i~~~i~~TPL~~~~~l~~~~g~~i~~K~E~~~ptGS~KdRga~~~i~~~~~~~~~-----~~vv~~ssGN~g~a 88 (323)
T 1v71_A 14 ASASERIKKFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLNEAQRK-----AGVLTFSSGNHAQA 88 (323)
T ss_dssp HHHHHHHTTTSCCCCEECCHHHHHHHTSEEEEEEGGGSGGGBTHHHHHHHHHTTCCHHHHH-----HCEEECCSSHHHHH
T ss_pred HHHHHHHhccCCCCCceEhHhhHHHhCCeEEEEecCCCCcCCHHHHHHHHHHHHHHHhcCC-----CeEEEeCCCcHHHH
Confidence 456788899999999999999887677899999999999999999999999976543 222 57999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhch
Q 020528 85 LAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETT 164 (325)
Q Consensus 85 lA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~ 164 (325)
+|++|+++|++|+||||++++..|+++++.+||+|+.+++ +++++.+.+++++++. +++|++||+|+.+ +.||.++
T Consensus 89 lA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~l~~~~-~~~~i~~~~n~~~-~~g~~t~ 164 (323)
T 1v71_A 89 IALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDR--YKDDREKMAKEISERE-GLTIIPPYDHPHV-LAGQGTA 164 (323)
T ss_dssp HHHHHHHTTCCEEEEEETTCCHHHHHHHHHTTCEEEEECT--TTTCHHHHHHHHHHHH-TCBCCCSSSSHHH-HHHHTHH
T ss_pred HHHHHHHcCCCEEEECCCCCcHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCCCCCcch-hhhHhHH
Confidence 9999999999999999999999999999999999999996 4677888899988776 6788999999887 6899999
Q ss_pred HHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----CCcccccCCCCCC-
Q 020528 165 GPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKP-----GPHKIQGIGAGFI- 234 (325)
Q Consensus 165 ~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~-----~~~~~~gl~~~~~- 234 (325)
++||++|+. .+|+||+|+|+||+++|+++++|+.+|++|||+|+|.+++++. .+++ ..+.+++++.+..
T Consensus 165 ~~Ei~~q~~-~~d~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~ 243 (323)
T 1v71_A 165 AKELFEEVG-PLDALFVCLGGGGLLSGSALAARHFAPNCEVYGVEPEAGNDGQQSFRKGSIVHIDTPKTIADGAQTQHLG 243 (323)
T ss_dssp HHHHHHHHC-CCSEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEGGGCHHHHHHHHTSCCCCCCCCCSCTTSCCSSCC
T ss_pred HHHHHHhcC-CCCEEEEecCCcHHHHHHHHHHHHcCCCCEEEEEEeCCCchHHHHHHcCCceecCCCCcccccccCCCCc
Confidence 999999994 7999999999999999999999999999999999999987653 2322 1345677765532
Q ss_pred --ccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhH
Q 020528 235 --PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFE 312 (325)
Q Consensus 235 --~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~ 312 (325)
++.+.++++|+++.|+|+|+++++++|++++|+++||++|+++++++++.++ .++++||+|+|| |+.+++. |.
T Consensus 244 ~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~eps~a~alaa~~~~~~~--~~~~~vv~i~tG-g~~~~~~--~~ 318 (323)
T 1v71_A 244 NYTFSIIKEKVDDILTVSDEELIDCLKFYAARMKIVVEPTGCLSFAAARAMKEK--LKNKRIGIIISG-GNVDIER--YA 318 (323)
T ss_dssp HHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHTCCCCCGGGGHHHHHHHHTGGG--GTTCEEEEEECB-CCCCHHH--HH
T ss_pred HHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCeEEcHHHHHHHHHHHHhHHh--cCCCeEEEEeCC-CCCCHHH--HH
Confidence 2234457899999999999999999999999999999999999999987654 278899999977 4554443 44
Q ss_pred HHH
Q 020528 313 SVK 315 (325)
Q Consensus 313 ~~~ 315 (325)
++.
T Consensus 319 ~~~ 321 (323)
T 1v71_A 319 HFL 321 (323)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-58 Score=431.17 Aligned_cols=297 Identities=21% Similarity=0.267 Sum_probs=256.4
Q ss_pred HHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHH
Q 020528 10 KDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMA 89 (325)
Q Consensus 10 ~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a 89 (325)
+++...+++|||+++++|++.+|.+||+|+|++|||||||||++.+++.++.+++. ..+||++|+||||+|+|++|
T Consensus 52 ~~i~~~i~~TPL~~l~~l~~~~g~~i~~K~E~~~ptgSfKdRga~~~i~~l~~~~~----~~~vv~assGN~g~a~A~aa 127 (366)
T 3iau_A 52 SPVYDVAIESPLELAEKLSDRLGVNFYIKREDKQRVFSFKLRGAYNMMSNLSREEL----DKGVITASAGNHAQGVALAG 127 (366)
T ss_dssp CCGGGTCCCCCEEECHHHHHHHTSEEEEEEGGGSTTSBTTHHHHHHHHHTSCHHHH----HHCEEEECSSHHHHHHHHHH
T ss_pred HHHhhhcCCCCcEEhhhhhHhhCCEEEEEecCCCCCcchHHHHHHHHHHHHHHhCC----CCEEEEeCCCHHHHHHHHHH
Confidence 35567889999999999987778899999999999999999999999987643321 15699999999999999999
Q ss_pred HHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHHH
Q 020528 90 AAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIW 169 (325)
Q Consensus 90 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~ 169 (325)
+++|++|+|+||++++..|+++++.+||+|+.+++ +++++.+.+++++++. +++|++||+|+.+ +.||.+++.||+
T Consensus 128 ~~~G~~~~iv~P~~~~~~k~~~~~~~GA~V~~v~~--~~~~~~~~a~~~~~~~-~~~~i~~~~n~~~-i~g~~t~~~Ei~ 203 (366)
T 3iau_A 128 QRLNCVAKIVMPTTTPQIKIDAVRALGGDVVLYGK--TFDEAQTHALELSEKD-GLKYIPPFDDPGV-IKGQGTIGTEIN 203 (366)
T ss_dssp HHTTCCEEEEECTTCCHHHHHHHHHTTCEEEECCS--SHHHHHHHHHHHHHHH-TCEECCSSSSHHH-HHHHHHHHHHHH
T ss_pred HHhCCceEEEeCCCCCHHHHHHHHHCCCeEEEECc--CHHHHHHHHHHHHHhc-CCEecCCCCChHH-HHHHHHHHHHHH
Confidence 99999999999999999999999999999999984 6899999999998887 7899999999987 699999999999
Q ss_pred hhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----CCcccccCCCCCC---ccc
Q 020528 170 KGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKP-----GPHKIQGIGAGFI---PGV 237 (325)
Q Consensus 170 ~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~-----~~~~~~gl~~~~~---~~~ 237 (325)
+|+ +.||+||+|+|+||+++|++.++|+.+|.+|+++|+|.+++++. .+.+ ..+..++++.+.+ ++.
T Consensus 204 ~q~-~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~vigVe~~~~~~l~~~~~~g~~~~~~~~~tia~gl~~~~~~~~~~~ 282 (366)
T 3iau_A 204 RQL-KDIHAVFIPVGGGGLIAGVATFFKQIAPNTKIIGVEPYGAASMTLSLHEGHRVKLSNVDTFADGVAVALVGEYTFA 282 (366)
T ss_dssp HHC-CSEEEEEEECSSSHHHHHHHHHHHHHSTTSEEEEEEEGGGCHHHHHHHHTSCCEESCCCCSSGGGCCSSCCHHHHH
T ss_pred Hhc-CCCCEEEEccCchHHHHHHHHHHHHhCCCCeEEEEeecCChHHHHHHHcCCCCcCCCccchhhhhcCCCCcHHHHH
Confidence 999 78999999999999999999999999999999999999998764 2332 1234566655432 344
Q ss_pred cccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhHHHHHH
Q 020528 238 LDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFESVKKE 317 (325)
Q Consensus 238 ~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~~~~~~ 317 (325)
+.++++|+++.|+|+|+.++++++++++|+++||+||+++++++++++++..++++||+|+||+ +.+++. +..+.+.
T Consensus 283 ~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~ep~sa~alaa~~~~~~~~~~~g~~Vv~i~tGg-n~d~~~--l~~~~~~ 359 (366)
T 3iau_A 283 KCQELIDGMVLVANDGISAAIKDVYDEGRNILETSGAVAIAGAAAYCEFYKIKNENIVAIASGA-NMDFSK--LHKVTEL 359 (366)
T ss_dssp HHHHHCCEEEEECHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHTTCCSCEEEEEECBC-CCCGGG--HHHHHHH
T ss_pred HHHhcCCCceeECHHHHHHHHHHHHHHcCcEEcHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCC-CCCHHH--HHHHHHh
Confidence 5567889999999999999999999999999999999999999998876655689999999765 545554 6666554
Q ss_pred h
Q 020528 318 A 318 (325)
Q Consensus 318 ~ 318 (325)
+
T Consensus 360 ~ 360 (366)
T 3iau_A 360 A 360 (366)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-58 Score=440.82 Aligned_cols=286 Identities=23% Similarity=0.288 Sum_probs=251.8
Q ss_pred HHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHH
Q 020528 11 DVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAA 90 (325)
Q Consensus 11 ~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~ 90 (325)
++...+++|||+++++|++..|++||+|+|++|||||||||++.+++.++.+++. .++||++|+||||+|+|++|+
T Consensus 24 ~i~~~i~~TPL~~l~~Ls~~~g~~V~lK~E~lqPtgSfKdRgA~n~i~~l~~~~~----~~gVV~aSsGNhg~avA~aa~ 99 (514)
T 1tdj_A 24 PVYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQK----AHGVITASAGNHAQGVAFSSA 99 (514)
T ss_dssp CGGGTCCCCCEEECHHHHHHTTSEEEEECGGGSTTSSSTHHHHHHHHHTTTTSSC----SSSCEEEECSSSHHHHHHHHH
T ss_pred hHhcccCCCCcEEchhhHHhhCCeEEEEECCCCCcccHHHHHHHHHHHHHHHhcC----CCEEEEECCcHHHHHHHHHHH
Confidence 5677899999999999987778899999999999999999999999998765432 257999999999999999999
Q ss_pred HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHHHh
Q 020528 91 AKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWK 170 (325)
Q Consensus 91 ~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~ 170 (325)
++|++|+||||.+++..|+++++.+||+|+.++. +++++.+.+++++++. +++|++||+|+.+ ++||+|+++||++
T Consensus 100 ~lGi~~~IvmP~~~p~~Kv~~~r~~GAeVvlv~~--~~dda~~~a~ela~e~-g~~~v~pfdnp~~-iaGqgTig~EI~e 175 (514)
T 1tdj_A 100 RLGVKALIVMPTATADIKVDAVRGFGGEVLLHGA--NFDEAKAKAIELSQQQ-GFTWVPPFDHPMV-IAGQGTLALELLQ 175 (514)
T ss_dssp HTTCCEEEECCSSCCHHHHHHHHHHSCEEECCCS--SHHHHHHHHHHHHHHH-CCEECCSSCCHHH-HHHHHHHHHHHHH
T ss_pred HcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEeeCCCCCHHH-HHHHHHHHHHHHH
Confidence 9999999999999999999999999999999985 6999999999999887 7899999999987 7999999999999
Q ss_pred hhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----CCcccccCCCCCC---cccc
Q 020528 171 GTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKP-----GPHKIQGIGAGFI---PGVL 238 (325)
Q Consensus 171 ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~-----~~~~~~gl~~~~~---~~~~ 238 (325)
|+.+ +|+||+|+|+||+++|++.++|+++|.+|||||||++++++. .+++ ..+.++|++...+ ++.+
T Consensus 176 Ql~~-~D~vvvpvGgGGliaGia~~lk~~~P~~kVIgVep~~a~~l~~sl~~G~~~~l~~v~tiadGiav~~~g~~~~~l 254 (514)
T 1tdj_A 176 QDAH-LDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSACLKAALDAGHPVDLPRVGLFAEGVAVKRIGDETFRL 254 (514)
T ss_dssp HCTT-CCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEETTTCHHHHHHHHTSCCCCSCCCSSSSTTCCSSCCCHHHHH
T ss_pred HCCC-CCEEEEccCcHHHHHHHHHHHHHhCCCCEEEEEeccCChhHHHHHhcCCeeecCCccccccchhcCCCChHHHHH
Confidence 9954 999999999999999999999999999999999999998764 2332 1234566665432 3446
Q ss_pred ccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCC
Q 020528 239 DVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERY 305 (325)
Q Consensus 239 ~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~ 305 (325)
.++++|+++.|+|+|+.++++++++++|+++||+||++++++++++++...++++||+|+||++.++
T Consensus 255 ~~~~vd~~v~Vsd~ei~~ai~~L~~~~givvEPsgA~alAal~~~~~~~~~~g~~VV~I~tGgn~d~ 321 (514)
T 1tdj_A 255 CQEYLDDIITVDSDAICAAMKDLFEDVRAVAEPSGALALAGMKKYIALHNIRGERLAHILSGANVNF 321 (514)
T ss_dssp HTTSCCEEEEECHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHTCCSCEEEEECCCCCCCT
T ss_pred HHHhCCeEEEECHHHHHHHHHHHHHHcCeEEcHHHHHHHHHHHHHHHhcCCCCCeEEEEEeCCCCCH
Confidence 6788999999999999999999999999999999999999999987654347889999998776553
|
| >3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-57 Score=433.58 Aligned_cols=300 Identities=19% Similarity=0.215 Sum_probs=254.8
Q ss_pred hhhhCCCCceeccccc----CCC----CceEEEEeCCCCC-CCChhhHHHHHHHHH-----HHHhCCCCCCC--------
Q 020528 13 TELIGKTPLVYLNRIV----DGC----VARIAAKLEMMEP-CSSVKDRIGYSMIAD-----AEEKGLIRPGE-------- 70 (325)
Q Consensus 13 ~~~~~~TPL~~~~~l~----~~~----~~~l~~K~E~~np-tGS~K~R~a~~~~~~-----a~~~g~~~~g~-------- 70 (325)
+.++++|||+++++|+ +.+ +++||+|+|++|| |||||||++.+++.. ++++|.+.+|.
T Consensus 73 ~~g~~~TPL~~~~~l~~~l~~~~g~~~~~~v~lK~E~~~p~tGSfK~Rga~~~i~~l~~~~a~~~G~l~~g~~~~~l~~~ 152 (442)
T 3ss7_X 73 TGGIIESELVAIPAMQKRLEKEYQQPISGQLLLKKDSHLPISGSIKARGGIYEVLAHAEKLALEAGLLTLDDDYSKLLSP 152 (442)
T ss_dssp GTTCCCCCEEECHHHHHHHHHHHTCCCCSEEEEEEGGGCTTTSBTHHHHHHHHHHHHHHHHHHHTTSCCTTSCGGGGGSH
T ss_pred cCCCCCCCcEEhHhhhhHHHHhhCCCcCCeEEEeecCCCCCCCCcHHHHHHHHHHHHhHHHHHHcCCCCCCcchhhhhhh
Confidence 3566899999999876 433 4799999999999 999999999999875 78899988875
Q ss_pred --------eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhC
Q 020528 71 --------SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKT 142 (325)
Q Consensus 71 --------~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~ 142 (325)
++||++|+||||+|+|++|+++|++|+||||++++..|+.+++.+||+|+.+++ +++++.+.+++++++.
T Consensus 153 ~~r~~~~~~~vv~aSsGNhg~avA~~aa~~G~~~~Ivmp~~~~~~k~~~~r~~GA~Vv~v~~--~~~~a~~~a~~~a~~~ 230 (442)
T 3ss7_X 153 EFKQFFSQYSIAVGSTGNLGLSIGIMSARIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEQ--DYGVAVEEGRKAAQSD 230 (442)
T ss_dssp HHHHHHHTSEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEESS--CHHHHHHHHHHHHHTC
T ss_pred hhhhhccCcEEEEECCCHHHHHHHHHHHHhCCcEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhC
Confidence 489999999999999999999999999999999999999999999999999996 6899999999998887
Q ss_pred CCeEEeCCCCCCcchHhHHhchHHHHHhhhCC--------CCCEEEEecCCchhHHHHHHHHHhh-CCCcEEEEEecCCC
Q 020528 143 PNSYVLQQFENPANPKIHYETTGPEIWKGTGG--------KIDALVSGIGTGGTVTGAGKYLKEH-NPEIKLYGVEPVES 213 (325)
Q Consensus 143 ~~~~~~~~~~n~~~~~~g~~t~~~Ei~~ql~~--------~~D~iv~pvG~Gg~~aGi~~~~k~~-~~~~~vigV~~~~~ 213 (325)
+++|+++++ |+.+.+.||.|+++||++|+.. .||+||+|+|+||+++|++.+||+. +|+++||+|||.++
T Consensus 231 ~~~~~i~~~-n~~~~~~G~~t~g~Ei~eQl~~~g~~vD~~~Pd~VvvpvG~GG~~aGi~~~lk~~~~~~v~vigVep~~~ 309 (442)
T 3ss7_X 231 PNCFFIDDE-NSRTLFLGYSVAGQRLKAQFAQQGRIVDADNPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHS 309 (442)
T ss_dssp TTEEECCTT-TCHHHHHHHHHHHHHHHHHHHHHTCCCBTTBCEEEEEECSSSHHHHHHHHHHHHHHGGGEEEEEEEETTC
T ss_pred CCceeCCCC-ChHHHHHHHHHHHHHHHHHHHhhcCcccccCCCEEEEEeCCchHHHHHHHHHHHhcCCCCEEEEEEeCCc
Confidence 678899884 5656689999999999999842 3669999999999999999999997 79999999999999
Q ss_pred cccc----CCCC-----------CCcccccCCCCCC---ccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHH
Q 020528 214 AVLS----GGKP-----------GPHKIQGIGAGFI---PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGA 275 (325)
Q Consensus 214 ~~~~----~~~~-----------~~~~~~gl~~~~~---~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~ 275 (325)
+++. .|.+ ..+.++||+.+.+ .+.+.++++|+++.|+|+|+++++++|++++|+++||+||+
T Consensus 310 ~~~~~~~~~G~~~~~~v~~~g~~~~TiAdgl~v~~~~~~~~~~~~~~~d~~~~Vsd~e~~~a~~~L~~~eGi~~epssaa 389 (442)
T 3ss7_X 310 PCMLLGVHTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLDGFYTLSDQTMYDMLGWLAQEEGIRLEPSALA 389 (442)
T ss_dssp CHHHHHHHHSCGGGCBGGGGTCCCCCSCGGGCCSBCCSSHHHHHGGGCCEEEEECHHHHHHHHHHHHHHHCCCCCGGGGG
T ss_pred hHHHHHHhcCCCceeeeccCCCchhhHHhhcCCCCCchhHHHHHHhhCCeEEEECHHHHHHHHHHHHHHCCCeEcHHHHH
Confidence 8753 2222 2345567766542 22334578899999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC-------CC----CCCEEEEEeCCCCCCCcchhhhHHHHHH
Q 020528 276 ATAAAIQIAKRP-------EN----AGKLIVVVFPSFGERYLSSVLFESVKKE 317 (325)
Q Consensus 276 a~aa~~~~~~~~-------~~----~~~~vv~i~t~~g~~~~~~~~~~~~~~~ 317 (325)
++++++++++.. .. ++++||+++|+|+.++.+. +++++..
T Consensus 390 alAa~~~l~~~~~~~~~~~l~~~~~~~~~vv~i~TGG~~~~~~~--~~~~~~~ 440 (442)
T 3ss7_X 390 GMAGPQRVCASVSYQQMHGFSAEQLRNTTHLVWATGGGMVPEEE--MNQYLAK 440 (442)
T ss_dssp GGGHHHHHHHCHHHHHHHTCCHHHHHTCEEEEEECBCTTCCHHH--HHHHHHH
T ss_pred HHHHHHHHHhchhhHHhcCCCcccCCCCeEEEEECCCCCCCHHH--HHHHHHh
Confidence 999999987631 11 1789999999999987664 5555543
|
| >1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-56 Score=418.13 Aligned_cols=287 Identities=25% Similarity=0.327 Sum_probs=243.0
Q ss_pred CCCCceecccccCCCCceEEEEeCCCCC-CCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCe
Q 020528 17 GKTPLVYLNRIVDGCVARIAAKLEMMEP-CSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYR 95 (325)
Q Consensus 17 ~~TPL~~~~~l~~~~~~~l~~K~E~~np-tGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~ 95 (325)
.+|||+++++|++. |.+||+|+|++|| |||||||++.+++..+. +.+++| ++||++|+||||+|+|++|+++|++
T Consensus 95 ~~TPL~~l~~Ls~~-g~~IylK~E~lnp~tGS~K~R~a~~~i~~l~--~a~~~g-~~Iv~assGNhG~AlA~aaa~~Gl~ 170 (389)
T 1wkv_A 95 KPTPLVRSRLQLPN-GVRVWLKLEWYNPFSLSVKDRPAVEIISRLS--RRVEKG-SLVADATSSNFGVALSAVARLYGYR 170 (389)
T ss_dssp CSCCEEECCCCCST-TEEEEEEEGGGSTTTSBTTHHHHHHHHHHHT--TTSCTT-CEEEEECCHHHHHHHHHHHHHTTCE
T ss_pred CCCCeEEccccccC-CCeEEEEEcCCCCCcCChHHHHHHHHHHHHH--HHHhcC-CEEEEECCcHHHHHHHHHHHHcCCe
Confidence 47999999999875 7899999999999 99999999999999855 444455 6899999999999999999999999
Q ss_pred EEEEecCCCCHHHHHHHHHcCCEEE-EeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHHHhhhC-
Q 020528 96 LIITMPASMSLERRMVLLAFGAELV-LTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTG- 173 (325)
Q Consensus 96 ~~i~~p~~~~~~~~~~~~~~Ga~v~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~ql~- 173 (325)
|+||||+.++..|+.+++.+||+|+ .++. .+++++.+.+++++++. +++|++||+|+.|++.||++++.||++|+.
T Consensus 171 ~~ivmp~~~~~~k~~~~~~~GAeVv~~v~~-~~~~da~~~a~~~~~~~-g~~~~~p~~N~~~~~~~~~t~g~Ei~~Q~~~ 248 (389)
T 1wkv_A 171 ARVYLPGAAEEFGKLLPRLLGAQVIVDPEA-PSTVHLLPRVMKDSKNE-GFVHVNQFYNDANFEAHMRGTAREIFVQSRR 248 (389)
T ss_dssp EEEEEETTSCHHHHHHHHHTTCEEEEETTC-SSSGGGHHHHHHHHHHH-CCEECCTTTCHHHHHHHHHTHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHcCCEEEEEcCC-CCHHHHHHHHHHHHHcc-CcEecCcCCChHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999 7773 36888999999887775 789999999998888999999999999984
Q ss_pred --CCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCCcccccCCCCCCccccccccCC-eEEEeC
Q 020528 174 --GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLD-ETVQIS 250 (325)
Q Consensus 174 --~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d-~~~~v~ 250 (325)
..||+||+|+|+||+++|++.+|++..|.+|||+|||.+++.+.+ .. .+.. .|..+....+| +.+.|+
T Consensus 249 ~g~~~D~vv~~vG~GG~~~Gi~~~~k~~~p~vrvigVe~~~~~~l~G----i~---~i~~--~~~~~~~~~~dg~~~~Vs 319 (389)
T 1wkv_A 249 GGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPG----IR---RVET--GMLWINMLDISYTLAEVT 319 (389)
T ss_dssp TTCCEEEEEECCSSSHHHHHHHHHHHHHCTTCEEEEEEECTTCCCTT----CC---CGGG--CCSHHHHSCCCCEEEEEC
T ss_pred cCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEecCCCCcccc----cc---ccCC--cchhhhhheeccEEEEEC
Confidence 369999999999999999999999999999999999998865531 11 1111 12223345567 899999
Q ss_pred HHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhHHHHHHhcC
Q 020528 251 SEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFESVKKEAES 320 (325)
Q Consensus 251 d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~~~~~~~~~ 320 (325)
|+|+++++++|++++|++++|+||+++++++++++++..+++.+|+++||+|.||+++ +.++..+..+
T Consensus 320 d~ea~~a~~~l~~~eGi~~~pssa~alaa~~~l~~~g~~~~~~vVviltg~G~k~~~~--~~~~~~~~~~ 387 (389)
T 1wkv_A 320 LEEAMEAVVEVARSDGLVIGPSGGAAVKALAKKAAEGDLEPGDYVVVVPDTGFKYLSL--VQNALEGAGD 387 (389)
T ss_dssp HHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHHTTCSCSEEEEEEECBBGGGCHHH--HHHHHC----
T ss_pred HHHHHHHHHHHHHHcCCeEChHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccCHHH--HHHHHHhcCC
Confidence 9999999999999999999999999999999998775434456888999999999997 4455444433
|
| >4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-56 Score=419.50 Aligned_cols=297 Identities=21% Similarity=0.236 Sum_probs=247.9
Q ss_pred hhhCCCCceecccccCCCC-ceEEEEeCCCC-CCCChhhHHHHHHHHHHH--HhCC----CC-------CCCe-EEEecC
Q 020528 14 ELIGKTPLVYLNRIVDGCV-ARIAAKLEMME-PCSSVKDRIGYSMIADAE--EKGL----IR-------PGES-VLIEPT 77 (325)
Q Consensus 14 ~~~~~TPL~~~~~l~~~~~-~~l~~K~E~~n-ptGS~K~R~a~~~~~~a~--~~g~----~~-------~g~~-~vv~~s 77 (325)
...++|||+++++|++.+| .+||+|+|++| ||||||||++.+++.++. +.|. +. .+.+ +||++|
T Consensus 40 ~~~~~TPL~~~~~l~~~~g~~~i~~K~E~~~~ptgSfK~Rga~~~i~~~~~~~~G~~~~~l~~e~l~~~~~~~~~vv~aS 119 (398)
T 4d9i_A 40 AGYRPTPLCALDDLANLFGVKKILVKDESKRFGLNAFXMLGGAYAIAQLLCEKYHLDIETLSFEHLKNAIGEKMTFATTT 119 (398)
T ss_dssp TTCCCCCEEECHHHHHHHTSSEEEEEEGGGSTTTTBSTHHHHHHHHHHHHHHHHTCCGGGCCHHHHHHCCSCCCEEEEEC
T ss_pred CCCCCCCceehHHHHHHhCCCcEEEEECCCCCCCCcchhhhhHHHHHHHHHHhhcccccccchhhhhhhccCCCEEEEEC
Confidence 4578999999999987777 59999999999 999999999999999884 3341 00 1125 899999
Q ss_pred CChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCC-----CC
Q 020528 78 SGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQ-----FE 152 (325)
Q Consensus 78 sGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~ 152 (325)
+||||+|+|++|+.+|++|+||||++++..|+++++.+||+|+.+++ +++++.+.+++++++. +++|++| |+
T Consensus 120 sGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~--~~~~a~~~a~~~~~~~-g~~~v~~~~~~g~~ 196 (398)
T 4d9i_A 120 DGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTDM--NYDDTVRLTMQHAQQH-GWEVVQDTAWEGYT 196 (398)
T ss_dssp SSHHHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHTTTCEEEECSS--CHHHHHHHHHHHHHHH-TCEECCSSCBTTBC
T ss_pred CCHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHHc-CCEEecCcccCCcC
Confidence 99999999999999999999999999999999999999999999996 6899999999998887 7899986 65
Q ss_pred -CCcchHhHHhchHHHHHhhhCCC---CCEEEEecCCchhHHHHHHHHHhh--CCCcEEEEEecCCCcccc----CCCCC
Q 020528 153 -NPANPKIHYETTGPEIWKGTGGK---IDALVSGIGTGGTVTGAGKYLKEH--NPEIKLYGVEPVESAVLS----GGKPG 222 (325)
Q Consensus 153 -n~~~~~~g~~t~~~Ei~~ql~~~---~D~iv~pvG~Gg~~aGi~~~~k~~--~~~~~vigV~~~~~~~~~----~~~~~ 222 (325)
|+.+.+.||.|++.||++|+.+. ||+||+|+|+||+++|++.++|+. .+.+|||+|||.+++++. .+.+.
T Consensus 197 ~~~~~~~~G~~t~~~Ei~~q~~~~g~~~d~vvvpvG~GG~~aGi~~~~k~~~~~~~~~vigVep~~~~~~~~s~~~g~~~ 276 (398)
T 4d9i_A 197 KIPTWIMQGYATLADEAVEQMREMGVTPTHVLLQAGVGAMAGGVLGYLVDVYSPQNLHSIIVEPDKADCIYRSGVKGDIV 276 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEECSSSHHHHHHHHHHHHHHCTTSCEEEEEEETTSCHHHHHHHHTSCC
T ss_pred CCCchhhhhHHHHHHHHHHHhhhcCCCCCEEEEecCccHHHHHHHHHHHHhcCCCCCEEEEEEeCCCchHHHHHHcCCce
Confidence 34556899999999999998543 999999999999999999999876 478999999999998774 34332
Q ss_pred ------CcccccCCCCCCccc----cccccCCeEEEeCHHHHHHHHHHHHHHcC----CeeecchHHHHHHHHHHH----
Q 020528 223 ------PHKIQGIGAGFIPGV----LDVNLLDETVQISSEEAIETAKLLALKEG----LLVGISSGAATAAAIQIA---- 284 (325)
Q Consensus 223 ------~~~~~gl~~~~~~~~----~~~~~~d~~~~v~d~e~~~a~~~l~~~~g----i~~~p~sg~a~aa~~~~~---- 284 (325)
.+..++++.+. |.. +.++++|+++.|+|+|+++++++|++++| +++||+||++++++++++
T Consensus 277 ~~~~~~~tia~gl~~~~-p~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~eG~~~~i~~epssa~alaa~~~~~~~~~ 355 (398)
T 4d9i_A 277 NVGGDMATIMAGLACGE-PNPLGWEILRNCATQFISCQDSVAALGMRVLGNPYGNDPRIISGESGAVGLGVLAAVHYHPQ 355 (398)
T ss_dssp CC------CCTTCCCSS-CCHHHHHHHHHHCCEEEEECTHHHHHHHHHHHSCSTTCCCCCCCHHHHHHHHHHHHHHHSTT
T ss_pred ecCCCCCceeccccCCC-CCHHHHHHHHHcCCeEEEECHHHHHHHHHHHHHhhCCCCcEEECchHHHHHHHHHHhhhhhh
Confidence 23345555443 333 33678999999999999999999999999 999999999999999874
Q ss_pred -----hcCC-CCCCEEEEEeCCCCCCCcchhhhHHHHHH
Q 020528 285 -----KRPE-NAGKLIVVVFPSFGERYLSSVLFESVKKE 317 (325)
Q Consensus 285 -----~~~~-~~~~~vv~i~t~~g~~~~~~~~~~~~~~~ 317 (325)
+++. .++++||+|+| ||+++++. |.++...
T Consensus 356 ~~~l~~~~~~~~~~~Vv~i~t-GG~~d~~~--~~~~~~~ 391 (398)
T 4d9i_A 356 RQSLMEKLALNKDAVVLVIST-EGDTDVKH--YREVVWE 391 (398)
T ss_dssp HHHHHHHTTCCTTCEEEEEEC-BCCSSHHH--HHHHHTT
T ss_pred hHHHHHhcCCCCCCEEEEEeC-CCCCCHHH--HHHHHhc
Confidence 3333 47899999998 57988775 6666544
|
| >4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-57 Score=417.06 Aligned_cols=291 Identities=21% Similarity=0.200 Sum_probs=246.2
Q ss_pred cchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCC--CCChhhHHHHHHHHHHHHhCCCCCCCeEEEecC--CChh
Q 020528 6 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEP--CSSVKDRIGYSMIADAEEKGLIRPGESVLIEPT--SGNT 81 (325)
Q Consensus 6 ~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~np--tGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s--sGN~ 81 (325)
....++|.+.+++|||+++++|++.+|.+||+|+|++|| +||||||++.+++..++++|. ++||++| +|||
T Consensus 20 ~~a~~ri~~~~~~TPL~~~~~l~~~~g~~v~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~G~-----~~vv~~s~tsGN~ 94 (342)
T 4d9b_A 20 LTRFPRLEFIGAPTPLEYLPRLSDYLGREIYIKRDDVTPIAMGGNKLRKLEFLVADALREGA-----DTLITAGAIQSNH 94 (342)
T ss_dssp GGGSCCCCSSCSCCCEEECHHHHHHHTSCEEEEEGGGCSSTTCCTHHHHHHHHHHHHHHTTC-----CEEEEEEETTCHH
T ss_pred hccCCcccccCCCCceeEhhhhHHhhCCEEEEEeCCCCCCCCcchHHHhHHHHHHHHHHcCC-----CEEEEcCCcccHH
Confidence 445678899999999999999987777899999999999 999999999999999999987 6788886 7999
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCCH--------HHHHHHHHcCCEEEEeCCCCChhHHHH-HHHHHHHhCCCeEEeCC--
Q 020528 82 GIGLAFMAAAKGYRLIITMPASMSL--------ERRMVLLAFGAELVLTDPARGMKGAVQ-KAEEIRDKTPNSYVLQQ-- 150 (325)
Q Consensus 82 g~alA~~a~~~g~~~~i~~p~~~~~--------~~~~~~~~~Ga~v~~~~~~~~~~~~~~-~a~~~~~~~~~~~~~~~-- 150 (325)
|+|+|++|+++|++|+||||++++. .|+.+++.+||+|+.++...+.+++.+ .++++.++. +..|+.+
T Consensus 95 g~alA~aa~~~G~~~~iv~p~~~~~~~~~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~a~~l~~~~-~~~~~~p~~ 173 (342)
T 4d9b_A 95 VRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEMCDALTDPDAQLQTLATRIEAQG-FRPYVIPVG 173 (342)
T ss_dssp HHHHHHHHHHHTCEEEEEEECTTCCCCHHHHHSHHHHHHHHTTCEEEECSCCSSHHHHHHHHHHHHHHTT-CCEEECCGG
T ss_pred HHHHHHHHHHhCCcEEEEEeCCCCCccccccccchHHHHHHCCCEEEEECchhhHHHHHHHHHHHHHhcC-CceEEeCCC
Confidence 9999999999999999999998763 599999999999999997655566654 556666665 3344444
Q ss_pred CCCCcchHhHHhchHHHHHhhhC--CCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCC---CCcc
Q 020528 151 FENPANPKIHYETTGPEIWKGTG--GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKP---GPHK 225 (325)
Q Consensus 151 ~~n~~~~~~g~~t~~~Ei~~ql~--~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~---~~~~ 225 (325)
+.|+.+ ..||.|++.||++|+. ..||+||+|+|+||+++|+++++|+.+|.+|||+|+|.+++.+..... ..+.
T Consensus 174 ~~n~~~-~~G~~t~~~EI~~q~~~~~~~d~vv~~vGtGGt~aGi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~t~ 252 (342)
T 4d9b_A 174 GSSALG-AMGYVESALEIAQQCEEVVGLSSVVVASGSAGTHAGLAVGLEHLMPDVELIGVTVSRSVAEQKPKVIALQQAI 252 (342)
T ss_dssp GCSHHH-HHHHHHHHHHHHHHHTTTCCCCEEEEEESSSHHHHHHHHHHHHHCTTSEEEEEESSSCHHHHHHHHHHHHHHH
T ss_pred CCChHH-HHHHHHHHHHHHHHHhccCCCCEEEEeCCCCHHHHHHHHHHHhhCCCCeEEEEEecCcHHHHHHHHHHHHHHH
Confidence 345554 5699999999999996 479999999999999999999999999999999999999976642211 1234
Q ss_pred cccCCC-CCCccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecc-hHHHHHHHHHHHhcCC-CCCCEEEEEeCCCC
Q 020528 226 IQGIGA-GFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGIS-SGAATAAAIQIAKRPE-NAGKLIVVVFPSFG 302 (325)
Q Consensus 226 ~~gl~~-~~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~-sg~a~aa~~~~~~~~~-~~~~~vv~i~t~~g 302 (325)
+++|+. +..++.+.++++|+++.|+|+|+++++++|++++|+++||+ ||+++++++++++++. .++++||+|+|+ |
T Consensus 253 a~gl~~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~epsYsa~a~aa~~~~~~~~~~~~~~~Vv~i~tG-G 331 (342)
T 4d9b_A 253 AGQLALTATADIHLWDDYFAPGYGVPNDAGMEAVKLLASLEGVLLDPVYTGKAMAGLIDGISQKRFNDDGPILFIHTG-G 331 (342)
T ss_dssp HHHTTCCCCCCCEEECTTSTTCTTCCCHHHHHHHHHHHHHHSCCCCTTTHHHHHHHHHHHHHHTCSSSSSCEEEEECC-C
T ss_pred HHHcCCCCccceEEEecCCCceEecCCHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHcCCCCCCCeEEEEECC-C
Confidence 467766 55677888889999999999999999999999999999997 9999999999987654 478899999965 5
Q ss_pred CC
Q 020528 303 ER 304 (325)
Q Consensus 303 ~~ 304 (325)
+.
T Consensus 332 n~ 333 (342)
T 4d9b_A 332 AP 333 (342)
T ss_dssp TT
T ss_pred cc
Confidence 54
|
| >1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-56 Score=416.41 Aligned_cols=292 Identities=17% Similarity=0.153 Sum_probs=246.8
Q ss_pred hHHHhhhhCCCCceecccccCCC-C-ceEEEEeCCCC-C--CCChhhHHHHHHHHHHHHhCCCCCCCeEEEe--cCCChh
Q 020528 9 AKDVTELIGKTPLVYLNRIVDGC-V-ARIAAKLEMME-P--CSSVKDRIGYSMIADAEEKGLIRPGESVLIE--PTSGNT 81 (325)
Q Consensus 9 ~~~i~~~~~~TPL~~~~~l~~~~-~-~~l~~K~E~~n-p--tGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~--~ssGN~ 81 (325)
.+++...+++|||+++++|++.+ | .+||+|+|++| | +||||||++.+++.++.++|. ++||+ +|+|||
T Consensus 6 ~~~i~~~~~~TPL~~~~~l~~~~~g~~~i~~K~E~~n~p~~~Gs~K~R~a~~~l~~a~~~g~-----~~vv~~G~ssGN~ 80 (341)
T 1f2d_A 6 FAKYPLTFGPSPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDY-----THLVSIGGRQSNQ 80 (341)
T ss_dssp SCCCCCSSSSCCEEECHHHHHHTTTCSEEEEEEGGGSCSSTTCCHHHHHHTTTHHHHHHSCC-----SEEEEEEETTCHH
T ss_pred CCCcccCCCCCcceeHHhHHHhhCCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHHHHcCC-----CEEEEcCCcchHH
Confidence 35678889999999999998766 7 89999999999 9 999999999999999999886 67999 999999
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCC-----H------HHHHHHHHcCCEEEEeCCCCCh---hHHHHHHHHHHHhCCC-eE
Q 020528 82 GIGLAFMAAAKGYRLIITMPASMS-----L------ERRMVLLAFGAELVLTDPARGM---KGAVQKAEEIRDKTPN-SY 146 (325)
Q Consensus 82 g~alA~~a~~~g~~~~i~~p~~~~-----~------~~~~~~~~~Ga~v~~~~~~~~~---~~~~~~a~~~~~~~~~-~~ 146 (325)
|+|+|++|+.+|++|+||||++.+ . .|+++++.+||+|+.++...+. +.+.+.+++++++.+. ++
T Consensus 81 g~alA~~a~~~G~~~~iv~p~~~~~~~~~~~~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~ 160 (341)
T 1f2d_A 81 TRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRVIEDGFDIGMRKSFANALQELEDAGHKPYP 160 (341)
T ss_dssp HHHHHHHHHHHTCEEEEEEECCSCCCGGGTTTTTTSHHHHHHHHTTCEEEECCCCCCSSCCHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHhCCceEEEeccCCCccccccccccccccHHHHHhCCCEEEEeCCccchhHHHHHHHHHHHHHhcCCcEEE
Confidence 999999999999999999999887 3 4999999999999999975332 3677788888877643 44
Q ss_pred EeCC-CCCCcchHhHHhchHHHHHhhhC---CCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCC-
Q 020528 147 VLQQ-FENPANPKIHYETTGPEIWKGTG---GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKP- 221 (325)
Q Consensus 147 ~~~~-~~n~~~~~~g~~t~~~Ei~~ql~---~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~- 221 (325)
+.++ |+||.+ +.||.+++.||++|+. ..||+||+|+|+|||++|++++||+.+|++|||+|||.+++.+.....
T Consensus 161 i~~~~~~np~~-~~G~~t~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~ 239 (341)
T 1f2d_A 161 IPAGCSEHKYG-GLGFVGFADEVINQEVELGIKFDKIVVCCVTGSTTAGILAGMAQYGRQDDVIAIDASFTSEKTKEQTL 239 (341)
T ss_dssp ECGGGTTSTTT-TTHHHHHHHHHHHHHHHHTCCCSEEEEEESSSHHHHHHHHHHGGGTCGGGEEEEECSSCHHHHHHHHH
T ss_pred eCCCcCCCCcc-HHHHHHHHHHHHHHHHhcCCCCCEEEEecCchHhHHHHHHHHHhcCCCceEEEEEecCchHHHHHHHH
Confidence 5688 999998 5789999999999995 479999999999999999999999999999999999999977642211
Q ss_pred --CCcccccCCCCC--CccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeec-chHHHHHHHHHHHhcCC-CCCCEEE
Q 020528 222 --GPHKIQGIGAGF--IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGI-SSGAATAAAIQIAKRPE-NAGKLIV 295 (325)
Q Consensus 222 --~~~~~~gl~~~~--~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p-~sg~a~aa~~~~~~~~~-~~~~~vv 295 (325)
..+.+++++.+. .++.+.++++|+++.|+|+|+++++++|++++|+++|| +||+++++++++++++. .++++||
T Consensus 240 ~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~egi~~ep~~sa~alaa~~~~~~~~~~~~~~~Vv 319 (341)
T 1f2d_A 240 RIANNTAKLIGVEHEFKDFTLDTRFAYPCYGVPNEGTIEAIRTCAEQEGVLTDPVYEGKSMQGLIALIKEDYFKPGANVL 319 (341)
T ss_dssp HHHHHHHHHHTCCCCCSCCCEECTTSTTBTTBCCHHHHHHHHHHHHHHSCCCCTTTHHHHHHHHHHHHHTTCSCTTCEEE
T ss_pred HHHHHHHHHcCCCCCcCeEEEecCcccceEecCCHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHhCCCCCCCeEE
Confidence 112334555332 34466778899999999999999999999999999999 59999999999987754 4788999
Q ss_pred EEeCCCCCCCcc
Q 020528 296 VVFPSFGERYLS 307 (325)
Q Consensus 296 ~i~t~~g~~~~~ 307 (325)
+|+|+ |+..+.
T Consensus 320 ~i~tG-G~~~~~ 330 (341)
T 1f2d_A 320 YVHLG-GAPALS 330 (341)
T ss_dssp EEECC-CGGGGG
T ss_pred EEECC-chHHhh
Confidence 99965 554333
|
| >1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-56 Score=410.65 Aligned_cols=288 Identities=20% Similarity=0.209 Sum_probs=244.6
Q ss_pred hhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCC--CCChhhHHHHHHHHHHHHhCCCCCCCeEEEec--CCChhHH
Q 020528 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEP--CSSVKDRIGYSMIADAEEKGLIRPGESVLIEP--TSGNTGI 83 (325)
Q Consensus 8 ~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~np--tGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~--ssGN~g~ 83 (325)
..+++.+.+++|||+++++|++..|++||+|+|++|| +||||||.+.+++.+++++|. ++||++ |+||||+
T Consensus 11 ~~~~i~~~~~~TPL~~~~~l~~~~g~~i~~K~E~~~p~~~gs~K~R~~~~~i~~a~~~G~-----~~vv~~G~ssGN~g~ 85 (325)
T 1j0a_A 11 KFPRVELIPWETPIQYLPNISREIGADVYIKRDDLTGLGIGGNKIRKLEYLLGDALSKGA-----DVVITVGAVHSNHAF 85 (325)
T ss_dssp TCCCCCCCCSCCCEEECHHHHHHHTSEEEEEEGGGSCSTTCSTHHHHHHHHHHHHHHTTC-----SEEEEECCTTCHHHH
T ss_pred cCCCcccccCCCCceEhhhhhhhhCCEEEEEecccCCCCCCchHHHHHHHHHHHHHHcCC-----CEEEEcCCcchHHHH
Confidence 4456788999999999999886667899999999999 999999999999999999986 678886 9999999
Q ss_pred HHHHHHHHcCCeEEEEecCCC-CHHHHHHHHHcCCEEEEeCCCCCh---hHHHHHHHHHHHhCCCeE-EeCCCCCCcchH
Q 020528 84 GLAFMAAAKGYRLIITMPASM-SLERRMVLLAFGAELVLTDPARGM---KGAVQKAEEIRDKTPNSY-VLQQFENPANPK 158 (325)
Q Consensus 84 alA~~a~~~g~~~~i~~p~~~-~~~~~~~~~~~Ga~v~~~~~~~~~---~~~~~~a~~~~~~~~~~~-~~~~~~n~~~~~ 158 (325)
|+|++|+.+|++|+||||++. +..|+++++.+||+|+.++...+. +++.+.+++++++.+..| +..++.|+.+ .
T Consensus 86 alA~~a~~~G~~~~iv~p~~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~p~~~~n~~~-~ 164 (325)
T 1j0a_A 86 VTGLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDAKDSFELMKYAEEIAEELKREGRKPYVIPPGGASPIG-T 164 (325)
T ss_dssp HHHHHHHHTTCEEEEEEESCCCSCHHHHHHHHTTCEEEEESCCSTTTHHHHHHHHHHHHTTSSCCEEEECGGGCSHHH-H
T ss_pred HHHHHHHHhCCcEEEEECCCCCCCchHHHHHHCCCEEEEeCcchhhhhhHHHHHHHHHHHHcCCceEEEcCCCCCHHH-H
Confidence 999999999999999999999 999999999999999999975433 256778888887764433 4566678776 5
Q ss_pred hHHhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCC---CCcccccCC-CCCC
Q 020528 159 IHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKP---GPHKIQGIG-AGFI 234 (325)
Q Consensus 159 ~g~~t~~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~---~~~~~~gl~-~~~~ 234 (325)
.||.+++.||++|+++.||+||+|+|+||+++|+++++|+.+|++|||+|||.+++.+..... ......+++ .+..
T Consensus 165 ~g~~t~~~Ei~~q~~~~~d~vv~~vGtGGt~~Gi~~~lk~~~~~~~vigVe~~~~~~~~~~~~~t~~~~~~~~~g~~~~~ 244 (325)
T 1j0a_A 165 LGYVRAVGEIATQSEVKFDSIVVAAGSGGTLAGLSLGLSILNEDIRPVGIAVGRFGEVMTSKLDNLIKEAAELLGVKVEV 244 (325)
T ss_dssp THHHHHHHHHHHHCCCCCSEEEEEESSSHHHHHHHHHHHHTTCCCEEEEEECSSCSSSHHHHHHHHHHHHHHHTTCCCCS
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCchHhHHHHHHHHHhcCCCceEEEEEecCchHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 688999999999996689999999999999999999999999999999999999976642210 011122344 3346
Q ss_pred ccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecc-hHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCC
Q 020528 235 PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGIS-SGAATAAAIQIAKRPENAGKLIVVVFPSFGER 304 (325)
Q Consensus 235 ~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~-sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~ 304 (325)
|+.+.++++|+ +.|+|+|+++++++|++++|+++||+ ||++++++++++++... +++||+|+|+ |+.
T Consensus 245 ~~~~~~~~~~~-~~v~d~e~~~a~~~l~~~~gi~~ep~ssa~a~aa~~~~~~~~~~-~~~Vv~i~tG-G~~ 312 (325)
T 1j0a_A 245 RPELYDYSFGE-YGKITGEVAQIIRKVGTREGIILDPVYTGKAFYGLVDLARKGEL-GEKILFIHTG-GIS 312 (325)
T ss_dssp CCEEEECSTTS-TTCCCHHHHHHHHHHHHHHSCCCCTTTHHHHHHHHHHHHHTTCS-CSEEEEEECC-CHH
T ss_pred CcEEecCcccC-CCCCCHHHHHHHHHHHHhhCcccccchHHHHHHHHHHHHHcCCC-CCcEEEEECC-Cch
Confidence 77888889999 99999999999999999999999994 99999999998876543 8899999965 553
|
| >1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-55 Score=405.61 Aligned_cols=293 Identities=18% Similarity=0.192 Sum_probs=241.2
Q ss_pred hhHHHhhhhCCCCceecccccCCC-C-ceEEEEeCCCC-C--CCChhhHHHHHHHHHHHHhCCCCCCCeEEEe--cCCCh
Q 020528 8 IAKDVTELIGKTPLVYLNRIVDGC-V-ARIAAKLEMME-P--CSSVKDRIGYSMIADAEEKGLIRPGESVLIE--PTSGN 80 (325)
Q Consensus 8 ~~~~i~~~~~~TPL~~~~~l~~~~-~-~~l~~K~E~~n-p--tGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~--~ssGN 80 (325)
...++...+++|||+++++|++.+ | .+||+|+|++| | |||||||++.+++.++.++|. ++||+ +|+||
T Consensus 5 ~~~~i~~~~~~TPL~~~~~l~~~~~g~~~i~~K~E~~n~p~~~gs~K~R~a~~~l~~a~~~g~-----~~vv~~GassGN 79 (338)
T 1tzj_A 5 RFPRYPLTFGPTPIQPLARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQGC-----DTLVSIGGIQSN 79 (338)
T ss_dssp GSCCCCCSSSSCCEEECHHHHHHTTSSSEEEEEEGGGSCSSTTCCHHHHHHHTTHHHHHHTTC-----CEEEEEEETTCH
T ss_pred cCCccccCCCCCccEEHHHHHHhhCCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHHHHcCC-----CEEEEcCCchhH
Confidence 345788899999999999988766 6 79999999997 8 999999999999999998886 57888 79999
Q ss_pred hHHHHHHHHHHcCCeEEEEecCCCCHH--------HHHHHHHcCCEEEEeCCCCChh---HHHHHHHHHHHhCCCeEE-e
Q 020528 81 TGIGLAFMAAAKGYRLIITMPASMSLE--------RRMVLLAFGAELVLTDPARGMK---GAVQKAEEIRDKTPNSYV-L 148 (325)
Q Consensus 81 ~g~alA~~a~~~g~~~~i~~p~~~~~~--------~~~~~~~~Ga~v~~~~~~~~~~---~~~~~a~~~~~~~~~~~~-~ 148 (325)
||+|+|++|+++|++|+||||++.+.. |+++++.+||+|+.+++..+.. .+.+.+++++++.+..|+ .
T Consensus 80 ~g~alA~~a~~~G~~~~iv~p~~~~~~~~~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~p 159 (338)
T 1tzj_A 80 QTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRLVPDGFDIGFRRSWEDALESVRAAGGKPYAIP 159 (338)
T ss_dssp HHHHHHHHHHHHTCEEEEEEECCSSCCCTTTTTSHHHHHHHHTTCEEEECCC-------CHHHHHHHHHHHTTCCEEECC
T ss_pred HHHHHHHHHHHhCCceEEEecCCCCccccccccCccHHHHHhCCCEEEEeCCcchhhHHHHHHHHHHHHHhcCCceEEeC
Confidence 999999999999999999999987654 9999999999999998642211 246777788777644444 4
Q ss_pred CC-CCCCcchHhHHhchHHHHHhhhC---CCCCEEEEecCCchhHHHHHHHHHhh-CCCcEEEEEecCCCccccCCCC--
Q 020528 149 QQ-FENPANPKIHYETTGPEIWKGTG---GKIDALVSGIGTGGTVTGAGKYLKEH-NPEIKLYGVEPVESAVLSGGKP-- 221 (325)
Q Consensus 149 ~~-~~n~~~~~~g~~t~~~Ei~~ql~---~~~D~iv~pvG~Gg~~aGi~~~~k~~-~~~~~vigV~~~~~~~~~~~~~-- 221 (325)
++ |+|+.+ +.||.+++.||++|+. ..||+||+|+|+||+++|+++++|+. .|. |||+|+|.+++.+.....
T Consensus 160 ~~~~~n~~~-~~g~~t~~~Ei~~q~~~~~~~~d~vv~~vG~GGt~~Gi~~~~k~~g~~~-~vigve~~~~~~~~~~~~~~ 237 (338)
T 1tzj_A 160 AGCSDHPLG-GLGFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQAGMVVGFAADGRAD-RVIGVDASAKPAQTREQITR 237 (338)
T ss_dssp GGGTSSTTT-TTHHHHHHHHHHHHHHHHTSCCSEEEEEESSSHHHHHHHHHHHTTTCGG-GEEEEECSSCHHHHHHHHHH
T ss_pred CCcCCCccc-HHHHHHHHHHHHHHHHhcCCCCCEEEEecCCcHHHHHHHHHHHhhCCCC-eEEEEEccCchHHHHHHHHH
Confidence 55 899998 6789999999999984 47999999999999999999999998 888 999999999976542111
Q ss_pred -CCcccccCCCCC----CccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecc-hHHHHHHHHHHHhcCC-CCCCEE
Q 020528 222 -GPHKIQGIGAGF----IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGIS-SGAATAAAIQIAKRPE-NAGKLI 294 (325)
Q Consensus 222 -~~~~~~gl~~~~----~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~-sg~a~aa~~~~~~~~~-~~~~~v 294 (325)
..+.+++++.+. ..+.+.++++|+.+.|+|+|+++++++|++++|+++||+ ||+++++++++++++. .++++|
T Consensus 238 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~ep~ysa~alaa~~~~~~~~~~~~~~~V 317 (338)
T 1tzj_A 238 IARQTAEKVGLERDIMRADVVLDERFAGPEYGLPNEGTLEAIRLCARTEGMLTDPVYEGKSMHGMIEMVRNGEFPEGSRV 317 (338)
T ss_dssp HHHHHHHHHTCSSCCCGGGCEEECTTSCSBTTBCCHHHHHHHHHHHHHHSCCCCTTTHHHHHHHHHHHHHTTCSCTTCEE
T ss_pred HHHHHHHHcCCCCCCCcccEEEecCcccceeecCCHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCCCCCCeE
Confidence 112233343222 223455677899999999999999999999999999995 9999999999887654 378899
Q ss_pred EEEeCCCCCCCcch
Q 020528 295 VVVFPSFGERYLSS 308 (325)
Q Consensus 295 v~i~t~~g~~~~~~ 308 (325)
|+|+| ||++|++.
T Consensus 318 v~i~t-GG~~~~~~ 330 (338)
T 1tzj_A 318 LYAHL-GGVPALNG 330 (338)
T ss_dssp EEEEC-CCGGGGGG
T ss_pred EEEEC-CCcccccc
Confidence 99995 58888775
|
| >1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-53 Score=411.70 Aligned_cols=287 Identities=18% Similarity=0.179 Sum_probs=237.0
Q ss_pred HhhhhCCCCceecccccCC-CC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHH---hCCCCCCCeEEEecCCChhHHHHH
Q 020528 12 VTELIGKTPLVYLNRIVDG-CV-ARIAAKLEMMEPCSSVKDRIGYSMIADAEE---KGLIRPGESVLIEPTSGNTGIGLA 86 (325)
Q Consensus 12 i~~~~~~TPL~~~~~l~~~-~~-~~l~~K~E~~nptGS~K~R~a~~~~~~a~~---~g~~~~g~~~vv~~ssGN~g~alA 86 (325)
+..++|+|||+++++|++. +| .+||+|+|++|||||||||++.+++..+.+ +|. +..+||++|+||||+|+|
T Consensus 124 v~l~~g~TPLv~l~~L~~~~lg~~~l~~K~E~~nPTGSFKDRga~~~~~~l~~~~~~~~---g~~~Vv~aSsGNtG~AlA 200 (486)
T 1e5x_A 124 VSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKR---PVVGVGCASTGDTSAALS 200 (486)
T ss_dssp CCCCCCCCCEEECHHHHHHHHCCSSEEEEETTSSTTSBTTHHHHHHHHHHHHHHHHTTC---CCCEEEECCCSHHHHHHH
T ss_pred ccccCCCCCcEECcccchhhcCCCcEEEeeccCCCccCHHHHHHHHHHHHHHHHHHcCC---CCeEEEEcCCCHHHHHHH
Confidence 4566889999999998876 66 489999999999999999999888776544 331 236899999999999999
Q ss_pred HHHHHcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchH
Q 020528 87 FMAAAKGYRLIITMPAS-MSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTG 165 (325)
Q Consensus 87 ~~a~~~g~~~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~ 165 (325)
++|+++|++|+|++|.+ ++..|+.+++.+||+|+.+++ +++++.+.+++++++. ++++++++ |+.+ +.||.+++
T Consensus 201 ~~a~~~Gi~~~I~~P~~~~s~~k~~~~~~~GA~vi~v~g--~~dd~~~~a~~l~~~~-~~~~vns~-N~~~-i~gq~t~~ 275 (486)
T 1e5x_A 201 AYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDT--DFDGCMKLIREITAEL-PIYLANSL-NSLR-LEGQKTAA 275 (486)
T ss_dssp HHHHHHTCCEEEEEEGGGCCHHHHHHHHHTTCEEEEEES--CHHHHHHHHHHHHHHS-CEEEGGGS-HHHH-HHHHTHHH
T ss_pred HHHHHcCCeEEEEECCCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHhcC-CEEEeCCC-CHHH-HHHHHHHH
Confidence 99999999999999997 999999999999999999996 5899999999998887 68888887 7776 68999999
Q ss_pred HHHHhhhCC-CCCEEEEecCCchhHHHHHHHHHhhC------CCcEEEEEecCCCcccc----CCC--C-----CCcccc
Q 020528 166 PEIWKGTGG-KIDALVSGIGTGGTVTGAGKYLKEHN------PEIKLYGVEPVESAVLS----GGK--P-----GPHKIQ 227 (325)
Q Consensus 166 ~Ei~~ql~~-~~D~iv~pvG~Gg~~aGi~~~~k~~~------~~~~vigV~~~~~~~~~----~~~--~-----~~~~~~ 227 (325)
+||++|+++ .||+||+|+|+||+++|++.+||++. |.+|+|+||+++++++. .|. . ..+.++
T Consensus 276 ~Ei~~ql~~~~~D~vvvpvG~GG~i~Gi~~a~k~~~~~Gli~p~~rvi~Ve~~~~~~l~~~~~~G~~~~~~~~~~~t~a~ 355 (486)
T 1e5x_A 276 IEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFKXCQELGLVDRIPRMVCAQAANANPLYLHYKSGWKDFKPMTASTTFAS 355 (486)
T ss_dssp HHHHHHTTSCCCSEEEEECSSTHHHHHHHHHHHHHHHTTSSSCCCEEEEEEETTSSTHHHHHHTTTTTCCC---------
T ss_pred HHHHHHcCCCCCCEEEEeCCcHHHHHHHHHHHHHhhhhccCCCCCEEEEEecCCCchHHHHHHcCCCccccCCCCCeeCc
Confidence 999999965 59999999999999999999998864 78999999999987653 342 1 234556
Q ss_pred cCCCCCCcccccc--ccCCe----EEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCC-CCCCEEEEEeCC
Q 020528 228 GIGAGFIPGVLDV--NLLDE----TVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE-NAGKLIVVVFPS 300 (325)
Q Consensus 228 gl~~~~~~~~~~~--~~~d~----~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~i~t~ 300 (325)
+|+.+. |.++.+ ..+|+ ++.|+|+|++++++ +++++|+++||+||+++++++++.+++. .++++||+++|+
T Consensus 356 gi~i~~-p~~~~~~~~~~~~~~g~~~~Vsd~e~~~ai~-l~~~eGi~~ePssA~alaa~~~~~~~g~~~~~~~vV~i~Tg 433 (486)
T 1e5x_A 356 AIQIGD-PVSIDRAVYALKKCNGIVEEATEEELMDAMA-QADSTGMFICPHTGVALTALFKLRNQGVIAPTDRTVVVSTA 433 (486)
T ss_dssp --------CCCHHHHHHHHHTTCEEEEECHHHHHHHHH-HHHHTTCCCCHHHHHHHHHHHHHHHTTSSCTTCCEEEEECB
T ss_pred cccCCC-CccHHHHHHHHhccCCeEEEECHHHHHHHHH-HHHHCCeEEChhHHHHHHHHHHHHHhcCCCCCCeEEEEeCC
Confidence 766553 444432 23444 99999999999999 7788999999999999999999887653 467899999999
Q ss_pred CCCCCcch
Q 020528 301 FGERYLSS 308 (325)
Q Consensus 301 ~g~~~~~~ 308 (325)
++.||+++
T Consensus 434 ~~~k~~~~ 441 (486)
T 1e5x_A 434 HGLKFTQS 441 (486)
T ss_dssp CGGGGHHH
T ss_pred CCccCHHH
Confidence 99999987
|
| >1x1q_A Tryptophan synthase beta chain; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-53 Score=400.98 Aligned_cols=290 Identities=22% Similarity=0.257 Sum_probs=229.5
Q ss_pred hhhC-CCCceecccccCCC-CceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHHH
Q 020528 14 ELIG-KTPLVYLNRIVDGC-VARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAA 91 (325)
Q Consensus 14 ~~~~-~TPL~~~~~l~~~~-~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~ 91 (325)
..++ +|||+++++|++.+ +++||+|+|++|||||||+|++.+++..+.+.|. ...|+++|+||||+|+|++|++
T Consensus 72 ~~ig~~TPL~~~~~Ls~~~gg~~i~lK~E~l~ptGSfK~R~a~~~i~~a~~~g~----~~vI~~~ssGNhg~avA~aaa~ 147 (418)
T 1x1q_A 72 QFAGRPTPLYHAKRLSEYWGGAQVFLKREDLLHTGAHKINNTLGQALLARRMGK----RRVIAETGAGQHGVSVATVAAL 147 (418)
T ss_dssp HTTCCSCCEEECHHHHHHHTSSEEEEEEGGGSGGGBTTHHHHHHHHHHHHHHTC----CEEEEECSSSHHHHHHHHHHHH
T ss_pred cccCCCCCcEEhHHhHhhcCCceEEEEEccCCcCccHHHHHHHHHHHHHHHcCC----CEEEEecCchHHHHHHHHHHHH
Confidence 5675 49999999998766 5899999999999999999999999998888886 2445569999999999999999
Q ss_pred cCCeEEEEecCCC---CHHHHHHHHHcCCEEEEeCC-CCChhHHHHHHHHH-HHhCCCeEE-eCCCCCCcc----hHhHH
Q 020528 92 KGYRLIITMPASM---SLERRMVLLAFGAELVLTDP-ARGMKGAVQKAEEI-RDKTPNSYV-LQQFENPAN----PKIHY 161 (325)
Q Consensus 92 ~g~~~~i~~p~~~---~~~~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a~~~-~~~~~~~~~-~~~~~n~~~----~~~g~ 161 (325)
+|++|+||||+.. +..|+.+++.+||+|+.++. ..+++++.+.+.+. +++.++.+| ++++.|+.. ...||
T Consensus 148 ~Gi~~~I~mp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~~a~~~a~~~~~~~~~~~~~i~~~~~n~~p~~~~v~~gq 227 (418)
T 1x1q_A 148 FGLECVVYMGEEDVRRQALNVFRMKLLGAEVRPVAAGSRTLKDATNEAIRDWITNVRTTFYILGSVVGPHPYPMMVRDFQ 227 (418)
T ss_dssp HTCEEEEEEEHHHHHTCHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHHHHHTTTTEEECCCCSSSSTTHHHHHHHHH
T ss_pred cCCCEEEEECCCcchhhhHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEeCCccCCCCcHHHHHHHH
Confidence 9999999999852 34788999999999999984 34788988887654 555445555 455544432 12599
Q ss_pred hchHHHHHhhh----CCCCCEEEEecCCchhHHHHHHHHHhh-CCCcEEEEEecCCCcc--------ccCCCC-------
Q 020528 162 ETTGPEIWKGT----GGKIDALVSGIGTGGTVTGAGKYLKEH-NPEIKLYGVEPVESAV--------LSGGKP------- 221 (325)
Q Consensus 162 ~t~~~Ei~~ql----~~~~D~iv~pvG~Gg~~aGi~~~~k~~-~~~~~vigV~~~~~~~--------~~~~~~------- 221 (325)
+|+++||++|+ +..||+||+|+|+||+++|++.++|++ .|.+|||+|||.+++. +..+.+
T Consensus 228 ~t~~~Ei~~Ql~~~~~~~~D~vvvpvGgGG~~~Gi~~~~k~l~~p~~~vigVe~~g~~~~~~~~~~~l~~G~~~~~~g~~ 307 (418)
T 1x1q_A 228 SVIGEEVKRQSLELFGRLPDALIAAVGGGSNAIGLFAPFAYLPEGRPKLIGVEAAGEGLSTGRHAASIGAGKRGVLHGSY 307 (418)
T ss_dssp THHHHHHHHHHHHHHSSCCSEEEEECSSSSHHHHHHHHHHTSCTTCCEEEEEEECCTTSSSCHHHHHHHHTCEEEETTEE
T ss_pred HHHHHHHHHHHHhhcCCCCCEEEEecCCcHhHHHHHHHHHHhCCCCCeEEEEecCCcccccHHHHHHHHcCCeeeecccc
Confidence 99999999998 345999999999999999999999987 8999999999999731 222222
Q ss_pred -------------CCcccccCCCCCC---ccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHh
Q 020528 222 -------------GPHKIQGIGAGFI---PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAK 285 (325)
Q Consensus 222 -------------~~~~~~gl~~~~~---~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~ 285 (325)
..+..++|..+.+ .+.+....+|+++.|+|+|+.+++++|++++|++++|++|++++++.++.+
T Consensus 308 ~~~~~~~~g~~~~~~tia~gl~~~~~g~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~egi~~~~~sa~a~a~a~~~~~ 387 (418)
T 1x1q_A 308 MYLLYDHDGQITPAHSVSAGLDYPGVGPEHSYYADAGVAEYASVTDEEALEGFKLLARLEGIIPALESAHAIAYAAKVVP 387 (418)
T ss_dssp EEBCCC----------------CSBCCHHHHHHHHHTSEEEEEECHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHTT
T ss_pred ccccccccccccCCceeeeccCCCCCCHHHHHHHhccCeEEEEECHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHH
Confidence 1123345543221 122334567899999999999999999999999999999999999998865
Q ss_pred cCCCCCCEEEEEeCCCCCCCcch
Q 020528 286 RPENAGKLIVVVFPSFGERYLSS 308 (325)
Q Consensus 286 ~~~~~~~~vv~i~t~~g~~~~~~ 308 (325)
+. .++++||+++||+|+||+++
T Consensus 388 ~~-~~~~~Vv~vlsG~g~kd~~~ 409 (418)
T 1x1q_A 388 EM-DKDQVVVINLSGRGDKDVTE 409 (418)
T ss_dssp TS-CTTCEEEEEECBBGGGTHHH
T ss_pred hc-CCCCeEEEEECCCCCCCHHH
Confidence 42 36889999999999999886
|
| >1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB: 1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B* 2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B* 1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-53 Score=398.83 Aligned_cols=293 Identities=21% Similarity=0.249 Sum_probs=236.1
Q ss_pred HHHhhhhCC-CCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEe-cCCChhHHHHHH
Q 020528 10 KDVTELIGK-TPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIE-PTSGNTGIGLAF 87 (325)
Q Consensus 10 ~~i~~~~~~-TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~-~ssGN~g~alA~ 87 (325)
+.+...+++ |||+++++|++.+|++||+|+|++|||||||||++.+++..+.++|. .+||+ +|+||||+|+|+
T Consensus 46 ~~~~~~ig~~TPL~~~~~l~~~~g~~i~lK~E~l~ptGSfK~R~a~~~~~~a~~~g~-----~~vi~e~ssGNhg~a~A~ 120 (396)
T 1qop_B 46 DLLKNYAGRPTALTKCQNITAGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGK-----SEIIAETGAGQHGVASAL 120 (396)
T ss_dssp HHHHHTTCCSCCEEECHHHHTTSSEEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTC-----CEEEEEESSSHHHHHHHH
T ss_pred HHHHHhCCCCCCcEEhhhhhhccCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHcCc-----CEEEEecCchHHHHHHHH
Confidence 445567875 99999999998888999999999999999999999999999988886 45565 899999999999
Q ss_pred HHHHcCCeEEEEecCC-CCH--HHHHHHHHcCCEEEEeCC-CCChhHHHHHHHHH-HHhCCCeEE-eCCCCCCc----ch
Q 020528 88 MAAAKGYRLIITMPAS-MSL--ERRMVLLAFGAELVLTDP-ARGMKGAVQKAEEI-RDKTPNSYV-LQQFENPA----NP 157 (325)
Q Consensus 88 ~a~~~g~~~~i~~p~~-~~~--~~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a~~~-~~~~~~~~~-~~~~~n~~----~~ 157 (325)
+|+++|++|+||||.. .+. .|+.+++.+||+|+.++. ..+++++.+.+.+. +++.++.+| ++++.|+. ++
T Consensus 121 aa~~~G~~~~i~mp~~~~~~~~~~~~~~~~~GA~V~~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~n~~p~~~~v 200 (396)
T 1qop_B 121 ASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIV 200 (396)
T ss_dssp HHHHHTCEEEEEEEHHHHHHCHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHH
T ss_pred HHHHCCCcEEEEEcCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHhccCCcEEEeCCcCCCCCchHHH
Confidence 9999999999999985 433 567999999999999984 44788888888765 555445544 45554442 22
Q ss_pred HhHHhchHHHHHhhh----CCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcc--------ccCCCC----
Q 020528 158 KIHYETTGPEIWKGT----GGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV--------LSGGKP---- 221 (325)
Q Consensus 158 ~~g~~t~~~Ei~~ql----~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~--------~~~~~~---- 221 (325)
..||++++.||++|+ +..||+||+|+|+||+++|++.+++ ..|.+|||+|||.++.. +..+.+
T Consensus 201 ~~g~~t~~~Ei~~Ql~~~~~~~~d~vvvpvG~GG~~~Gi~~~~~-~~~~~~vigVe~~~~~~~~~~~~~~l~~g~~~~~~ 279 (396)
T 1qop_B 201 REFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFADFI-NDTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYF 279 (396)
T ss_dssp HHTTTHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGT-TCTTSEEEEEEEEETBGGGTBSCCHHHHSEEEEET
T ss_pred HHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHHh-cCCCCEEEEEeCCCccccchhhHHHHHcCCeeeec
Confidence 348999999999998 4579999999999999999999998 48999999999998642 222221
Q ss_pred ----------------CCcccccCCCCCC---ccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHH
Q 020528 222 ----------------GPHKIQGIGAGFI---PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQ 282 (325)
Q Consensus 222 ----------------~~~~~~gl~~~~~---~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~ 282 (325)
..+..++|..+.+ .+.+.+..+|+++.|+|+|+++++++|++++|++++|++|++++++.+
T Consensus 280 g~~~~~~~~~~g~~~~~~tia~gl~~~~~g~~~~~l~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~~~sa~a~a~a~~ 359 (396)
T 1qop_B 280 GMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALK 359 (396)
T ss_dssp EEEEEECBCTTSCBCCCCCSSGGGCCSSCCHHHHHHHHTTSSEEEEEEHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHH
T ss_pred cchhhhcccccCCcCCCceeeccCCCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHhcCCccccchHHHHHHHHH
Confidence 1223345543221 233445678999999999999999999999999999999999999998
Q ss_pred HHhcCCCCCCEEEEEeCCCCCCCcch
Q 020528 283 IAKRPENAGKLIVVVFPSFGERYLSS 308 (325)
Q Consensus 283 ~~~~~~~~~~~vv~i~t~~g~~~~~~ 308 (325)
++++...++++||+++||+|+||+++
T Consensus 360 l~~~~~~~~~~vv~i~tg~g~k~~~~ 385 (396)
T 1qop_B 360 MMREQPEKEQLLVVNLSGRGDKDIFT 385 (396)
T ss_dssp HHHHSTTSCEEEEEEECBBCGGGHHH
T ss_pred HHHhcCCCCCeEEEEECCCCCCCHHH
Confidence 87653226789999999999999886
|
| >1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural genomics/proteomics initiative, structural genomics, lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP: c.79.1.1 PDB: 1wdw_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-52 Score=394.14 Aligned_cols=293 Identities=23% Similarity=0.271 Sum_probs=235.4
Q ss_pred hHHHhhhhCC-CCceecccccCCCC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEE-ecCCChhHHHH
Q 020528 9 AKDVTELIGK-TPLVYLNRIVDGCV-ARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLI-EPTSGNTGIGL 85 (325)
Q Consensus 9 ~~~i~~~~~~-TPL~~~~~l~~~~~-~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv-~~ssGN~g~al 85 (325)
.+.+...+++ |||+++++|++.+| ++||+|+|++|||||||||++.+++..+.++|. .++| ++|+||||+|+
T Consensus 40 ~~~~~~~ig~~TPL~~~~~l~~~~g~~~i~~K~E~~~ptGSfK~R~a~~~i~~a~~~g~-----~~vv~~~ssGN~g~a~ 114 (388)
T 1v8z_A 40 NYYLKTWAGRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGK-----TRLIAETGAGQHGVAT 114 (388)
T ss_dssp HHHHHHTTCCSCCEEECHHHHHHHTSSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTC-----CEEEEEESSSHHHHHH
T ss_pred HHHHHHhcCCCCCceehHhhHhhcCCceEEEEeccCCCCCCHHHHHHHHHHHHHHHcCC-----CEEEEecCchHHHHHH
Confidence 3445568876 99999999987665 799999999999999999999999998888886 3455 58999999999
Q ss_pred HHHHHHcCCeEEEEecCC-C--CHHHHHHHHHcCCEEEEeCC-CCChhHHHHHHHH-HHHhCCCeE-EeCCCCCCcc---
Q 020528 86 AFMAAAKGYRLIITMPAS-M--SLERRMVLLAFGAELVLTDP-ARGMKGAVQKAEE-IRDKTPNSY-VLQQFENPAN--- 156 (325)
Q Consensus 86 A~~a~~~g~~~~i~~p~~-~--~~~~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a~~-~~~~~~~~~-~~~~~~n~~~--- 156 (325)
|++|+++|++|+||||.. . ...|+++++.+||+|+.++. ..+++++.+.+.+ ++++.++.+ .++++.|+.+
T Consensus 115 A~aa~~~G~~~~iv~p~~~~~~~~~~~~~~~~~GA~V~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~n~~p~~~ 194 (388)
T 1v8z_A 115 AMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPT 194 (388)
T ss_dssp HHHHHHTTCEEEEEEEHHHHTTCHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHH
T ss_pred HHHHHHcCCcEEEEEcCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCceEecCCccCCCCchh
Confidence 999999999999999985 2 24678999999999999985 3468888888865 456654544 4567666543
Q ss_pred -hHhHHhchHHHHHhhh----CCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcc--------ccCCCC--
Q 020528 157 -PKIHYETTGPEIWKGT----GGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV--------LSGGKP-- 221 (325)
Q Consensus 157 -~~~g~~t~~~Ei~~ql----~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~--------~~~~~~-- 221 (325)
+..||.|+++||++|+ ...||+||+|+|+||+++|++.+++. .|.+|||+|||+++.. +..+.+
T Consensus 195 ~~~~~~~t~~~Ei~~q~~~~~~~~~d~vvvpvG~GG~~aGi~~~~~~-~~~~~vigve~~~~~~~~~~~~~~l~~g~~~~ 273 (388)
T 1v8z_A 195 IVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFVN-DKKVKLVGVEAGGKGLESGKHSASLNAGQVGV 273 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGTT-CTTSEEEEEEEEETBGGGTBSCCHHHHCEEEE
T ss_pred HHHHHhHHHHHHHHHHHHHhcCCCCCEEEEecCccHhHHHHHHHHhh-CCCceEEEEccCccccchhhhhHHHhcCCcee
Confidence 2348999999999998 44699999999999999999998884 8999999999998643 111211
Q ss_pred ------------------CCcccccCCCCCC---ccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHH
Q 020528 222 ------------------GPHKIQGIGAGFI---PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAA 280 (325)
Q Consensus 222 ------------------~~~~~~gl~~~~~---~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~ 280 (325)
..+..+++....+ .+.+....+|+++.|+|+|++++++++++++|++++|++|++++++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~tia~gl~~~~~g~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~~~sa~a~a~a 353 (388)
T 1v8z_A 274 FHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELSRTEGIIPALESAHAVAYA 353 (388)
T ss_dssp ETTEEEEECBCTTSCBCCCCCSSTTSCCSBCCHHHHHHHHTTSEEEEEEEHHHHHHHHHHHHHHHSCCBCHHHHHHHHHH
T ss_pred ccccccccccccccccCCCceeeeccccCCCChhHHHHHhcCCcEEEEECHHHHHHHHHHHHHhcCCeecccHHHHHHHH
Confidence 1223344443211 1233345678999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCEEEEEeCCCCCCCcch
Q 020528 281 IQIAKRPENAGKLIVVVFPSFGERYLSS 308 (325)
Q Consensus 281 ~~~~~~~~~~~~~vv~i~t~~g~~~~~~ 308 (325)
.+++++. .++++||+++||+|+||+++
T Consensus 354 ~~l~~~~-~~~~~vv~i~tg~g~k~~~~ 380 (388)
T 1v8z_A 354 MKLAKEM-SRDEIIIVNLSGRGDKDLDI 380 (388)
T ss_dssp HHHHHTS-CTTCEEEEEECBBSGGGHHH
T ss_pred HHHHHhc-CCCCEEEEEECCCCccCHHH
Confidence 9987653 46889999999999999886
|
| >2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan biosynthesis, structural genomics; 2.20A {Mycobacterium tuberculosis} PDB: 2o2j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-51 Score=390.38 Aligned_cols=291 Identities=23% Similarity=0.275 Sum_probs=221.9
Q ss_pred HhhhhCC-CCceecccccCCC-CceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHH
Q 020528 12 VTELIGK-TPLVYLNRIVDGC-VARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMA 89 (325)
Q Consensus 12 i~~~~~~-TPL~~~~~l~~~~-~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a 89 (325)
+...+++ |||+++++|++.+ +++||+|+|++|||||||+|++.+++..+.+.|+ ...|+++|+||||+|+|++|
T Consensus 74 ~~~~~g~~TPL~~~~~Ls~~~gg~~i~lK~E~lnptGSfK~R~a~~~~~~a~~~g~----~~vI~~~ssGNhG~A~A~aa 149 (422)
T 2o2e_A 74 QANYAGRPSPLYEATRLSQHAGSARIFLKREDLNHTGSHKINNVLGQALLARRMGK----TRVIAETGAGQHGVATATAC 149 (422)
T ss_dssp TTTTSSCSCCEEECGGGGGGTTTCEEEEECGGGCCSSTTHHHHHHHHHHHHHHTTC----CEEEEEESSSHHHHHHHHHH
T ss_pred HHHhCCCCCCeEEChhhHhhcCCCeEEEEEcCCCCCCcHHHHHHHHHHHHHHHcCC----CeEEEecCccHHHHHHHHHH
Confidence 3456665 9999999999877 4799999999999999999999999998888886 24566799999999999999
Q ss_pred HHcCCeEEEEecCCC---CHHHHHHHHHcCCEEEEeCC-CCChhHHHHHHHH-HHHhCCCeEE-eCCCCCCc----chHh
Q 020528 90 AAKGYRLIITMPASM---SLERRMVLLAFGAELVLTDP-ARGMKGAVQKAEE-IRDKTPNSYV-LQQFENPA----NPKI 159 (325)
Q Consensus 90 ~~~g~~~~i~~p~~~---~~~~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a~~-~~~~~~~~~~-~~~~~n~~----~~~~ 159 (325)
+++|++|+||||... ...|+.+++.+||+|+.++. ..+++++.+.+.+ ++++.++.+| +++++|+. ++..
T Consensus 150 a~~G~~~~I~mp~~~~~~q~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~yi~~s~~g~~p~~~~v~~ 229 (422)
T 2o2e_A 150 ALLGLDCVIYMGGIDTARQALNVARMRLLGAEVVAVQTGSKTLKDAINEAFRDWVANADNTYYCFGTAAGPHPFPTMVRD 229 (422)
T ss_dssp HHHTCEEEEEEEHHHHHHSHHHHHHHHHTTCEEEEECSTTSCHHHHHHHHHHHHHHHTTTEEECCCCSSSCCCCHHHHHH
T ss_pred HHcCCcEEEEeCCCcchhhHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHhcCCCcEEEeCCccCCCCcHHHHHH
Confidence 999999999999853 24678999999999999985 3478899888855 4555445555 45554332 2235
Q ss_pred HHhchHHHHHhhh----CCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCc--------cccCCCCC-----
Q 020528 160 HYETTGPEIWKGT----GGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESA--------VLSGGKPG----- 222 (325)
Q Consensus 160 g~~t~~~Ei~~ql----~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~--------~~~~~~~~----- 222 (325)
||.+++.||.+|+ +..||+||+|+|+||+++|++.+++. .|.+|||+|||.++. .+..+.+.
T Consensus 230 ~q~t~g~Ei~~Ql~~~~~~~pD~vvvpvG~GG~~~Gi~~~~~~-~p~v~vigVe~~g~~~~~~~~~~~l~~g~~~~~~g~ 308 (422)
T 2o2e_A 230 FQRIIGMEARVQIQGQAGRLPDAVVACVGGGSNAIGIFHAFLD-DPGVRLVGFEAAGDGVETGRHAATFTAGSPGAFHGS 308 (422)
T ss_dssp HTTHHHHHHHHHHHHHSSSCCSEEEEEGGGHHHHHTTSGGGTT-CTTCEEEEEEECC-----------------------
T ss_pred HHHHHHHHHHHHHHHhhCCCCCEEEEccCCchhHHHHHHHHhc-CCCCeEEEEecCCCcccchhHHHHHHcCCceecccc
Confidence 8999999999997 34599999999999999999888764 789999999999872 23333221
Q ss_pred ---------------CcccccCCCCC---CccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHH
Q 020528 223 ---------------PHKIQGIGAGF---IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIA 284 (325)
Q Consensus 223 ---------------~~~~~gl~~~~---~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~ 284 (325)
.+..++|..+. ..+.+....+++++.|+|+|+++++++|+++||++++|++|+|++++.+++
T Consensus 309 ~~~~~~~~~g~~~~~~tia~gl~~~~~g~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~~esa~A~a~a~~l~ 388 (422)
T 2o2e_A 309 FSYLLQDEDGQTIESHSISAGLDYPGVGPEHAWLKEAGRVDYRPITDSEAMDAFGLLCRMEGIIPAIESAHAVAGALKLG 388 (422)
T ss_dssp --------------------------------------CCEEEEECHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_pred chhhcccccccccCCceeecccCCCCCCHHHHHHHHhCCeeEEEECHHHHHHHHHHHHHHcCCccCchHHHHHHHHHHHH
Confidence 11223443221 122344456789999999999999999999999999999999999999887
Q ss_pred hcCCCCCCEEEEEeCCCCCCCcch
Q 020528 285 KRPENAGKLIVVVFPSFGERYLSS 308 (325)
Q Consensus 285 ~~~~~~~~~vv~i~t~~g~~~~~~ 308 (325)
++. .++++||+++||+|+||+++
T Consensus 389 ~~~-~~~~~vvvilsG~g~kd~~~ 411 (422)
T 2o2e_A 389 VEL-GRGAVIVVNLSGRGDKDVET 411 (422)
T ss_dssp HHH-CTTCEEEEECCSCSSSHHHH
T ss_pred Hhc-CCCCEEEEEeCCCCCCCHHH
Confidence 643 36789999999999999886
|
| >1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A {Escherichia coli} SCOP: c.79.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-46 Score=358.30 Aligned_cols=269 Identities=14% Similarity=0.115 Sum_probs=218.1
Q ss_pred CCCCceecccccCCCCceEEEEeCCC-CCCCChhhHHHHHHH---HHHHHhCCCCCCCeEEEecCCChhHHHHH-HHHHH
Q 020528 17 GKTPLVYLNRIVDGCVARIAAKLEMM-EPCSSVKDRIGYSMI---ADAEEKGLIRPGESVLIEPTSGNTGIGLA-FMAAA 91 (325)
Q Consensus 17 ~~TPL~~~~~l~~~~~~~l~~K~E~~-nptGS~K~R~a~~~~---~~a~~~g~~~~g~~~vv~~ssGN~g~alA-~~a~~ 91 (325)
++|||+++++ +||+ +|++ |||||||||++.+++ .++ +++. ..+|+++||||||.|+| ++|++
T Consensus 82 ~~TPL~~l~~-------~i~~-~E~~~~pTgSfKdr~a~~l~~~l~~a-~~~~----~~~Iv~atsGNtG~A~A~~~a~~ 148 (428)
T 1vb3_A 82 FPAPVANVES-------DVGC-LELFHGPTLAFKDFGGRFMAQMLTHI-AGDK----PVTILTATSGDTGAAVAHAFYGL 148 (428)
T ss_dssp SCCCEEEEET-------TEEE-EECCCSTTSBTHHHHHHHHHHHHHHH-TTTC----CEEEEEECSSSHHHHHHHHTTTC
T ss_pred CCCCeEEecC-------CeEE-eeccCCCcccHHHHHHHHHHHHHHHH-HhcC----CCEEEecCCchHHHHHHHHHhhh
Confidence 6899999874 6999 5666 799999999999884 444 2232 37899999999999999 59999
Q ss_pred cCCeEEEEecCC-CCHHHHHHHHHcCCEE--EEeCCCCChhHHHHHHHHHHHh-----CCCeEEeCCCCCCcchHhHHhc
Q 020528 92 KGYRLIITMPAS-MSLERRMVLLAFGAEL--VLTDPARGMKGAVQKAEEIRDK-----TPNSYVLQQFENPANPKIHYET 163 (325)
Q Consensus 92 ~g~~~~i~~p~~-~~~~~~~~~~~~Ga~v--~~~~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~n~~~~~~g~~t 163 (325)
+|++|+||||++ ++..|+++|+.+||+| +.+++ +++++.+.+++++++ ..++++++++ |+.+ +.||.+
T Consensus 149 ~G~~~~I~~P~~~~s~~k~~~m~~~GA~V~~v~v~g--~~d~~~~~~~~~~~d~~~~~~~~~~~~n~~-n~~~-~~gq~t 224 (428)
T 1vb3_A 149 PNVKVVILYPRGKISPLQEKLFCTLGGNIETVAIDG--DFDACQALVKQAFDDEELKVALGLNSANSI-NISR-LLAQIC 224 (428)
T ss_dssp TTEEEEEEEETTCSCHHHHHHHHSCCTTEEEEEEES--CHHHHHHHHHHGGGCHHHHHHHTEECCSTT-SHHH-HHHTTH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhcCCeEEEEEeCC--CHHHHHHHHHHHHhchhhhhhcCeeeCCCC-CHHH-HHHHHH
Confidence 999999999994 9999999999999999 66654 789999999888753 1256677764 5665 789999
Q ss_pred hHHHHHhhhCC---CCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccc----cCCCCC-----CcccccCCC
Q 020528 164 TGPEIWKGTGG---KIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVL----SGGKPG-----PHKIQGIGA 231 (325)
Q Consensus 164 ~~~Ei~~ql~~---~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~----~~~~~~-----~~~~~gl~~ 231 (325)
+++||++|+.+ .+|+||+|+|+||+++|++.+++...|.+|+|+|++.++ .+ ..|.+. .+..+++..
T Consensus 225 ~~~Ei~~ql~~~g~~~d~vvvpvG~GG~i~G~~~a~~~g~p~~kii~a~~~~~-~l~~~~~~G~~~~~~~~~tis~g~~i 303 (428)
T 1vb3_A 225 YYFEAVAQLPQETRNQLVVSVPSGNFGDLTAGLLAKSLGLPVKRFIAATNVND-TVPRFLHDGQWSPKATQATLSNAMDV 303 (428)
T ss_dssp HHHHHHTTSCTTTTTSEEEEEECSSCHHHHHHHHHHHTTCCCSEEEEEECSCC-HHHHHHHHSCCCCCCCCCCSSGGGCC
T ss_pred HHHHHHHHcccccCCCCEEEEeCCchHHHHHHHHHHHcCCCCCeEEeecCCCh-HHHHHHHcCCcccCCCCCcccchhcC
Confidence 99999999964 599999999999999999999998888889999998763 22 234332 233345543
Q ss_pred CCCcccccc------cc-----CCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCC
Q 020528 232 GFIPGVLDV------NL-----LDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPS 300 (325)
Q Consensus 232 ~~~~~~~~~------~~-----~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~ 300 (325)
+ .|.++.+ +. .++.+.|+|+|+.++++++ +++|+++||+||+++++++++.+ ++++||+++|+
T Consensus 304 ~-~p~~~~~~~~l~~~~~~~~~~~~~~~Vsd~e~~~a~~~l-~~eGi~~~p~sa~a~aa~~~~~~----~~~~vV~i~tg 377 (428)
T 1vb3_A 304 S-QPNNWPRVEELFRRKIWQLKELGYAAVDDETTQQTMREL-KELGYTSEPHAAVAYRALRDQLN----PGEYGLFLGTA 377 (428)
T ss_dssp S-SCTTHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHHH-HHTTCCCCHHHHHHHHHHHTTCC----TTCEEEEEECB
T ss_pred C-CCccHHHHHHHHhcchhhhhCcEEEEECHHHHHHHHHHH-HHCCeEECchHHHHHHHHHHHhC----CCCcEEEEeCC
Confidence 3 2443322 12 5789999999999999999 99999999999999999987643 56899999999
Q ss_pred CCCCCcchh
Q 020528 301 FGERYLSSV 309 (325)
Q Consensus 301 ~g~~~~~~~ 309 (325)
+|.||++++
T Consensus 378 ~~~K~~~~v 386 (428)
T 1vb3_A 378 HPAKFKESV 386 (428)
T ss_dssp CGGGGHHHH
T ss_pred CCCCCHHHH
Confidence 999999873
|
| >1kl7_A Threonine synthase; threonine synthesis, pyridoxal 5-phosphate, beta-family, MON lyase; HET: PLP; 2.70A {Saccharomyces cerevisiae} SCOP: c.79.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-44 Score=345.07 Aligned_cols=282 Identities=14% Similarity=0.056 Sum_probs=214.9
Q ss_pred hhCCCCcee--cccccCCCCceEEEEeCCCCCCCChhhHHHHHHHH---HHH-HhCC-----CCCCCeEEEecCCChhHH
Q 020528 15 LIGKTPLVY--LNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIA---DAE-EKGL-----IRPGESVLIEPTSGNTGI 83 (325)
Q Consensus 15 ~~~~TPL~~--~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~---~a~-~~g~-----~~~g~~~vv~~ssGN~g~ 83 (325)
..+.|||++ ++++ .+||+|+|++|||||||||++.+++. ++. ++|. +.++ .+||++||||||.
T Consensus 93 ~~g~TPLv~~~l~~l-----~~l~~K~e~~nPTgSFKDrga~~~~~~~~~a~~~~g~~~~~~~~~~-~~Iv~ATSGNtG~ 166 (514)
T 1kl7_A 93 SDEVTPLVQNVTGDK-----ENLHILELFHGPTYAFKDVALQFVGNLFEYFLQRTNANLPEGEKKQ-ITVVGATSGDTGS 166 (514)
T ss_dssp STTSSCEECCTTCSS-----SCEEEEECCCSTTSBTHHHHHHHHHHHHHHHHHHHHTTSCSSSCCC-EEEEEECSSSHHH
T ss_pred CCCCCceeehhcccc-----cchhhhhhccCCCCcHHHHHHHHHHHHHHHHHHhcCCccccccCCC-CEEEECCCCcHHH
Confidence 377899999 7665 47999999999999999999998844 443 3462 3333 7899999999999
Q ss_pred HHHHHH--HHcCCeEEEEecCC-CCHHHHHHHH---HcCCEEEEeCCCCChhHHHHHHHHHHHhCC--CeEEeCCCCCCc
Q 020528 84 GLAFMA--AAKGYRLIITMPAS-MSLERRMVLL---AFGAELVLTDPARGMKGAVQKAEEIRDKTP--NSYVLQQFENPA 155 (325)
Q Consensus 84 alA~~a--~~~g~~~~i~~p~~-~~~~~~~~~~---~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~n~~ 155 (325)
| |++| ++.|++|+|++|++ ++..++.+|. .+|++++.+++ +++++++.+++++++.+ +.+.+ ++.|+.
T Consensus 167 A-A~~a~a~~~Gi~~~I~~P~~~~S~~q~~qm~~~~g~~~~vv~v~g--~fdda~~~vk~l~~~~~~~~~~~~-~~~Ns~ 242 (514)
T 1kl7_A 167 A-AIYGLRGKKDVSVFILYPTGRISPIQEEQMTTVPDENVQTLSVTG--TFDNCQDIVKAIFGDKEFNSKHNV-GAVNSI 242 (514)
T ss_dssp H-HHHHHTTCTTEEEEEEEETTSSCHHHHHHHHHCCCTTEEEEEESS--CHHHHHHHHHHHHHCSSCC--CCB-CCCCSC
T ss_pred H-HHHHHHhhcCCeEEEEEcCCCCCHHHHHHHhhhcCCCEEEEEcCC--CHHHHHHHHHHHHhccccccccee-EeeCCC
Confidence 9 6665 89999999999997 8887666663 34556666664 79999999999987753 11111 234554
Q ss_pred ch--HhHHhchHHHHHhhh-C---CCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCCC---
Q 020528 156 NP--KIHYETTGPEIWKGT-G---GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKPG--- 222 (325)
Q Consensus 156 ~~--~~g~~t~~~Ei~~ql-~---~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~~--- 222 (325)
|| +.||.+.++|+++|+ + +.+|+||+|+|+||++.|++.+.+...|.+|+|+|+++++ ++. .|...
T Consensus 243 N~~ri~gQ~tyy~e~~~ql~~~~~~~~d~~vvP~GngG~i~a~~~ak~~G~p~~rli~v~~~n~-~l~~~~~~G~~~~~~ 321 (514)
T 1kl7_A 243 NWARILAQMTYYFYSFFQATNGKDSKKVKFVVPSGNFGDILAGYFAKKMGLPIEKLAIATNEND-ILDRFLKSGLYERSD 321 (514)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSSSSCCCEEEEEECSSSHHHHHHHHHHHHTCCCCCEEEEECSCC-HHHHHHHHSEEECCS
T ss_pred CHhHHhhHHHHHHHHHHHHhhhcCCCCcEEEEECCchHHHHHHHHHHHcCCCCCEEEEEeCCcc-hHHHHHhcCCccCCC
Confidence 53 679999999999998 4 3589999999999999999876665568889999999994 442 23221
Q ss_pred ---CcccccCCCCCCcccccccc---CC------------------------------------------eEEEeCHHHH
Q 020528 223 ---PHKIQGIGAGFIPGVLDVNL---LD------------------------------------------ETVQISSEEA 254 (325)
Q Consensus 223 ---~~~~~gl~~~~~~~~~~~~~---~d------------------------------------------~~~~v~d~e~ 254 (325)
.+...+|... .|.++.+-+ .| .++.|+|+|+
T Consensus 322 ~~~~Tis~amdi~-~psn~er~l~~l~~~~~~~~~~~~d~~~v~~~~~~l~~~gg~~~~~~~~~~~~~~f~~~~Vsd~e~ 400 (514)
T 1kl7_A 322 KVAATLSPAMDIL-ISSNFERLLWYLAREYLANGDDLKAGEIVNNWFQELKTNGKFQVDKSIIEGASKDFTSERVSNEET 400 (514)
T ss_dssp SCCCCSCGGGCCS-SCTTHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHSEEECCHHHHHHHTTTEEEEECCHHHH
T ss_pred CCCCeechhhhcC-CCCcHHHHHHHHhccccccccccccHHHHHHHHHHHHhcCCeeccHHHHHHhhcCceEEEECHHHH
Confidence 1222333222 355554211 22 4889999999
Q ss_pred HHHHHHHHHHc----CCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcch
Q 020528 255 IETAKLLALKE----GLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSS 308 (325)
Q Consensus 255 ~~a~~~l~~~~----gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~ 308 (325)
.++++++++++ |+++||+||+++++++++.+++..+++++|++.|+++.||.+.
T Consensus 401 ~~ai~~l~~~~~~~~G~~~ep~tAv~~aa~~~~~~~g~~~~~~vV~l~Ta~~~Kf~~~ 458 (514)
T 1kl7_A 401 SETIKKIYESSVNPKHYILDPHTAVGVCATERLIAKDNDKSIQYISLSTAHPAKFADA 458 (514)
T ss_dssp HHHHHHHHHHCCSSTTCCCCHHHHHHHHHHHHHHHHHCCTTSEEEEEECBCGGGGHHH
T ss_pred HHHHHHHHHhCCCCCCEEEcccHHHHHHHHHHHHHhccCCCCcEEEEECCchhhhHHH
Confidence 99999999999 9999999999999999987653235779999999999999876
|
| >4f4f_A Threonine synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.90A {Brucella melitensis BV} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-43 Score=335.89 Aligned_cols=268 Identities=14% Similarity=0.117 Sum_probs=213.1
Q ss_pred CCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHH---HHHHH-HhCCCCCCCeEEEecCCChhH-HHHHHHHHHcC
Q 020528 19 TPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSM---IADAE-EKGLIRPGESVLIEPTSGNTG-IGLAFMAAAKG 93 (325)
Q Consensus 19 TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~---~~~a~-~~g~~~~g~~~vv~~ssGN~g-~alA~~a~~~g 93 (325)
|||+++.. ++|+|.|++|||||||||++.++ +.++. ++|. ..+|+++|||||| .++|++|+++|
T Consensus 94 ~pl~~l~~-------~~~~kee~~~PTgSFKDRga~~~~~~l~~a~~~~g~----~~~Vv~ASSGNtG~aa~aa~a~~~G 162 (468)
T 4f4f_A 94 CPLVQTDA-------NEFVLELFHGPTLAFKDVAMQLLARMMDYVLAQRGE----RATIVGATSGDTGGAAIEAFGGRDN 162 (468)
T ss_dssp SCEEEEET-------TEEEEECCCSTTSBTHHHHHHHHHHHHHHHHHHTTC----CEEEEEECSSHHHHHHHHHHTTCSS
T ss_pred CceEEecC-------CeehHHhccCCcccHHHHHHHHHHHHHHHHHHhcCC----CcEEEEECCchHHHHHHHHHHhccC
Confidence 89988743 69999999999999999999998 66664 5564 2589999999999 55577799999
Q ss_pred CeEEEEecCC-CCHHHHHHHHHcCC-EE--EEeCCCCChhHHHHHHHHHHHhCC-----CeEEeCCCCCCcchHhHHhch
Q 020528 94 YRLIITMPAS-MSLERRMVLLAFGA-EL--VLTDPARGMKGAVQKAEEIRDKTP-----NSYVLQQFENPANPKIHYETT 164 (325)
Q Consensus 94 ~~~~i~~p~~-~~~~~~~~~~~~Ga-~v--~~~~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~n~~~~~~g~~t~ 164 (325)
++++|+||++ ++..|+.+++.+|+ +| +.+++ +++++++.+++++++.+ +++++|+ .|+.. +.||.|+
T Consensus 163 i~~~I~~P~~~~s~~k~~~~~~~gganV~vv~v~g--~fdda~~~~k~~~~d~~~~~~~~~~~vns-in~~r-i~GQ~T~ 238 (468)
T 4f4f_A 163 TDIFILFPNGRVSPVQQRQMTSSGFSNVHALSIEG--NFDDCQNLVKGMFNDLEFCDALSLSGVNS-INWAR-IMPQVVY 238 (468)
T ss_dssp EEEEEEEETTCSCHHHHHHHHCSCCTTEEEEEEES--CHHHHHHHHHHHHHCHHHHHHHTEEECCT-TSHHH-HGGGHHH
T ss_pred CcEEEEeCCCCCCHHHHHHHHhcCCCeEEEeecCC--CHHHHHHHHHHHHhccccccccceEeCCC-CCHHH-HHhHHHH
Confidence 9999999999 99999999999974 55 56664 79999999999887542 4666666 35654 7899999
Q ss_pred HHHHHhhhCCCCCE---EEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----CCcccccCCCC
Q 020528 165 GPEIWKGTGGKIDA---LVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKP-----GPHKIQGIGAG 232 (325)
Q Consensus 165 ~~Ei~~ql~~~~D~---iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~-----~~~~~~gl~~~ 232 (325)
++||++|+. .+|. |+||+|+||+++|++.+.+...|..|+|+| +.+++++. .|.+ ..+..++|...
T Consensus 239 ~~Ei~~ql~-~~d~~v~vvVPvG~GG~i~g~~~Ak~mGlPi~kli~a-~n~~~~l~~~l~~G~~~~~~~~~Tia~smdi~ 316 (468)
T 4f4f_A 239 YFTAALSLG-APDRAVSFTVPTGNFGDIFAGYVAKRMGLPIEQLIIA-TNDNDILSRTLESGAYEMRGVAQTTSPSMDIQ 316 (468)
T ss_dssp HHHHHHHTT-TTSSCEEEEEECSSSHHHHHHHHHHHHTCCEEEEEEE-ECSCCHHHHHHHHSEEECCCCCCCSCGGGCCS
T ss_pred HHHHHHhcc-cCCCCeEEEEEeCCcHHHHHHHHHHHhCCCCCEEEEE-eCCchHHHHHHHcCCceecCCcceeCchhhcC
Confidence 999999994 7898 999999999999999885555577899999 77776653 2322 12333444433
Q ss_pred CCccccccc----------------------------------cC--CeEEEeCHHHHHHHHHHHHHHcCCeeecchHHH
Q 020528 233 FIPGVLDVN----------------------------------LL--DETVQISSEEAIETAKLLALKEGLLVGISSGAA 276 (325)
Q Consensus 233 ~~~~~~~~~----------------------------------~~--d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a 276 (325)
.|+++.+- .. ...+.|+|+|+.++++++++++|+++||+||++
T Consensus 317 -~~sN~erl~~~l~~~d~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~VsD~ei~~ai~~l~~~~g~~vEP~~Ava 395 (468)
T 4f4f_A 317 -ISSNFERLLFEAHGRDAAAVRGLMQGLKQSGGFTISEKPLSAIRSEFSAGRSTVDETAATIESVLSKDGYLLDPHSAIG 395 (468)
T ss_dssp -SCTTHHHHHHHHTTTCHHHHHHHHHHHHHHSEEECCHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred -ccchHHHHHHHHhccCHHHHHHHHHHHHhcCCeeccHHHHHHHhhcceEEEECHHHHHHHHHHHHHHCCEEECHhHHHH
Confidence 23332210 00 126899999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCEEEEEeCCCCCCCcch
Q 020528 277 TAAAIQIAKRPENAGKLIVVVFPSFGERYLSS 308 (325)
Q Consensus 277 ~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~ 308 (325)
+++++++. .++.++|++.|+++.||.+.
T Consensus 396 ~aa~~~~~----~~~~~~V~l~Ta~~~Kf~~~ 423 (468)
T 4f4f_A 396 VKVAREKA----SGTAPMVVLATAHPAKFPDA 423 (468)
T ss_dssp HHHHHHHC----CSSSCEEEEECBCGGGSHHH
T ss_pred HHHHHHHh----CCCCeEEEEecCCccccHHH
Confidence 99998873 25678999999999999776
|
| >3v7n_A Threonine synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; 1.40A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-41 Score=323.99 Aligned_cols=273 Identities=14% Similarity=0.062 Sum_probs=210.4
Q ss_pred CCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHH---HHHHH-HhCCCCCCCeEEEecCCChhHHHHHHHHH-HcC
Q 020528 19 TPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSM---IADAE-EKGLIRPGESVLIEPTSGNTGIGLAFMAA-AKG 93 (325)
Q Consensus 19 TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~---~~~a~-~~g~~~~g~~~vv~~ssGN~g~alA~~a~-~~g 93 (325)
|||+++..- -+.++|+|.|++|||||||||++.++ +..+. ++|. ..+|+++||||||.|+|++++ +.|
T Consensus 103 ~Pl~~l~~~---~~~~l~vkee~~~PTgSFKDRga~~~~~ll~~a~~~~g~----~~~Vv~ASSGNtG~Aaa~a~~~~~G 175 (487)
T 3v7n_A 103 TPLTTLGTE---NGAPVSLLELSNGPTLAFKDMAMQLLGNLFEYTLAKHGE----TLNILGATSGDTGSAAEYAMRGKEG 175 (487)
T ss_dssp SCEEEEEEE---TTEEEEEEECCCSTTSBTHHHHHHHHHHHHHHHHHTTTC----CEEEEEECSSHHHHHHHHHHTTCTT
T ss_pred ceeEEecCC---CCcceeHHhhccCCcCcHHHHHHHHHHHHHHHHHHhcCC----CcEEEEeCChHHHHHHHHHHHhccC
Confidence 788887420 01139999999999999999999998 77775 3454 256999999999999777776 899
Q ss_pred CeEEEEecCC-CCHHHHHHHHHcCC---EEEEeCCCCChhHHHHHHHHHHHhC-----CCeEEeCCCCCCcchHhHHhch
Q 020528 94 YRLIITMPAS-MSLERRMVLLAFGA---ELVLTDPARGMKGAVQKAEEIRDKT-----PNSYVLQQFENPANPKIHYETT 164 (325)
Q Consensus 94 ~~~~i~~p~~-~~~~~~~~~~~~Ga---~v~~~~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~n~~~~~~g~~t~ 164 (325)
++|+|++|++ ++..|+.+|+.+|+ +++.+++ +++++++.+++++++. -+..++|++ |+.. ++||++.
T Consensus 176 i~~~I~~P~~~~s~~k~~qm~~~Ga~nv~vv~v~G--~fDda~~~vk~~~~d~~~~~~~~l~~vns~-Np~r-i~gQ~ty 251 (487)
T 3v7n_A 176 VRVFMLSPHKKMSAFQTAQMYSLQDPNIFNLAVNG--VFDDCQDIVKAVSNDHAFKAQQKIGTVNSI-NWAR-VVAQVVY 251 (487)
T ss_dssp EEEEEEEETTCSCHHHHHHHHTCCCTTEEEEEEES--CHHHHHHHHHHHHTCHHHHHHTTEECCSTT-CHHH-HHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCcEEEEEECC--CHHHHHHHHHHhhhchHHHhhcCeeeeCCC-CHHH-HHhHHHH
Confidence 9999999998 99999999999998 7777875 6999999999987632 256777775 5654 7899998
Q ss_pred HHHHHhhhC---CCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCCC-----Ccc---cccC
Q 020528 165 GPEIWKGTG---GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKPG-----PHK---IQGI 229 (325)
Q Consensus 165 ~~Ei~~ql~---~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~~-----~~~---~~gl 229 (325)
++|+..|+. +.+|+|+||+|+||+++|++.+.+...|.+|+|++++++ +++. .|.+. .+. ..+|
T Consensus 252 y~~~~~el~~~~~~~d~vvVP~GngG~i~g~~~A~~mGlp~~rli~a~~~n-~~l~~~~~~G~~~~~~~~~Ti~t~s~sm 330 (487)
T 3v7n_A 252 YFKGYFAATRSNDERVSFTVPSGNFGNVCAGHIARMMGLPIEKLVVATNEN-DVLDEFFRTGAYRVRSAQDTYHTSSPSM 330 (487)
T ss_dssp HHHHHHHTCSSTTCCEEEEEGGGCHHHHHHHHHHHHTTCCEEEEEEECTTC-HHHHHHHHHSEEEC--------------
T ss_pred HHHHHHHHHhcCCCCcEEEEecCchHHHHHHHHHHHcCCCCceEEEEeCCC-cHHHHHHHcCCcccCCCCCccccCCchh
Confidence 888888873 359999999999999999998876656878999999998 4442 23321 122 2333
Q ss_pred CCCCCccccccc---c-----------------------------------CCeEEEeCHHHHHHHHHHHHHHcCCeeec
Q 020528 230 GAGFIPGVLDVN---L-----------------------------------LDETVQISSEEAIETAKLLALKEGLLVGI 271 (325)
Q Consensus 230 ~~~~~~~~~~~~---~-----------------------------------~d~~~~v~d~e~~~a~~~l~~~~gi~~~p 271 (325)
... .|+++.+- + ....+.|+|+|+.++++++++++|+++||
T Consensus 331 dI~-~psn~er~l~~l~~~d~~~~~~~m~~l~~~g~~~l~~~~~~~~~~~~~~~~~~VsDee~~~air~l~~~~G~l~dP 409 (487)
T 3v7n_A 331 DIS-KASNFERFVFDLLGRDPARVVQLFRDVEQKGGFDLAASGDFARVAEFGFVSGRSTHADRIATIRDVFERYRTMIDT 409 (487)
T ss_dssp -----CHHHHHHHHHHTTTCHHHHHHHHHHHHHHSEEETTTTTCTHHHHHTTEEEECCCHHHHHHHHHHHHHHSCCCCCH
T ss_pred ccC-CCccHHHHHHHHhCCCHHHHHHHHHHHHhcCCeecccchhHHHHHhhcceEEEECHHHHHHHHHHHHHHcCEEECh
Confidence 222 23332210 0 11357899999999999999999999999
Q ss_pred chHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcch
Q 020528 272 SSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSS 308 (325)
Q Consensus 272 ~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~ 308 (325)
+||++++++.++.+ ++.++|++.|+++.||.+.
T Consensus 410 htAva~aaa~~~~~----~~~~~V~l~Ta~p~Kf~~~ 442 (487)
T 3v7n_A 410 HTADGLKVAREHLR----PGVPMVVLETAQPIKFGES 442 (487)
T ss_dssp HHHHHHHHHTTSCC----TTSCEEEEECBCGGGGHHH
T ss_pred hHHHHHHHHHHhhC----CCCcEEEEecCCccccHHH
Confidence 99999999987532 4678999999999999876
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=95.02 E-value=0.37 Score=37.26 Aligned_cols=96 Identities=21% Similarity=0.135 Sum_probs=64.7
Q ss_pred EEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCC
Q 020528 72 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQF 151 (325)
Q Consensus 72 ~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 151 (325)
.++..+.|..|..+|......|.+++++-. .+.+.+.++..|..++.-+... .
T Consensus 9 ~viIiG~G~~G~~la~~L~~~g~~v~vid~---~~~~~~~~~~~g~~~i~gd~~~--~---------------------- 61 (140)
T 3fwz_A 9 HALLVGYGRVGSLLGEKLLASDIPLVVIET---SRTRVDELRERGVRAVLGNAAN--E---------------------- 61 (140)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEEES---CHHHHHHHHHTTCEEEESCTTS--H----------------------
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEEC---CHHHHHHHHHcCCCEEECCCCC--H----------------------
Confidence 466678899999999999999999887744 4566666666777664443210 0
Q ss_pred CCCcchHhHHhchHHHHHhhhC-CCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEe
Q 020528 152 ENPANPKIHYETTGPEIWKGTG-GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVE 209 (325)
Q Consensus 152 ~n~~~~~~g~~t~~~Ei~~ql~-~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~ 209 (325)
+++++.+ ...|+||++++.-....-++..++..+|..++++..
T Consensus 62 ---------------~~l~~a~i~~ad~vi~~~~~~~~n~~~~~~a~~~~~~~~iiar~ 105 (140)
T 3fwz_A 62 ---------------EIMQLAHLECAKWLILTIPNGYEAGEIVASARAKNPDIEIIARA 105 (140)
T ss_dssp ---------------HHHHHTTGGGCSEEEECCSCHHHHHHHHHHHHHHCSSSEEEEEE
T ss_pred ---------------HHHHhcCcccCCEEEEECCChHHHHHHHHHHHHHCCCCeEEEEE
Confidence 1112111 346888888887655544666778888888888754
|
| >1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2 | Back alignment and structure |
|---|
Probab=92.48 E-value=1.1 Score=36.67 Aligned_cols=76 Identities=20% Similarity=0.292 Sum_probs=57.7
Q ss_pred CCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEe-------cC--CCCHHHHHHHH
Q 020528 43 EPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITM-------PA--SMSLERRMVLL 113 (325)
Q Consensus 43 nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~-------p~--~~~~~~~~~~~ 113 (325)
+|.--+=+......+.+|.+.|. .+.||..++|.++..++-.. .|++.++|. |. ..+++..+.++
T Consensus 22 ~~G~eNT~~tl~la~era~e~~I----k~iVVAS~sG~TA~k~~e~~--~~i~lVvVTh~~GF~~pg~~e~~~e~~~~L~ 95 (201)
T 1vp8_A 22 KPGRENTEETLRLAVERAKELGI----KHLVVASSYGDTAMKALEMA--EGLEVVVVTYHTGFVREGENTMPPEVEEELR 95 (201)
T ss_dssp SCSGGGHHHHHHHHHHHHHHHTC----CEEEEECSSSHHHHHHHHHC--TTCEEEEEECCTTSSSTTCCSSCHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHcCC----CEEEEEeCCChHHHHHHHHh--cCCeEEEEeCcCCCCCCCCCcCCHHHHHHHH
Confidence 55656677778888889999886 25555555698887665533 789999888 32 36899999999
Q ss_pred HcCCEEEEeCC
Q 020528 114 AFGAELVLTDP 124 (325)
Q Consensus 114 ~~Ga~v~~~~~ 124 (325)
..|.+|+.-..
T Consensus 96 ~~G~~V~t~tH 106 (201)
T 1vp8_A 96 KRGAKIVRQSH 106 (201)
T ss_dssp HTTCEEEECCC
T ss_pred hCCCEEEEEec
Confidence 99999988764
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=90.92 E-value=2.2 Score=37.97 Aligned_cols=59 Identities=25% Similarity=0.274 Sum_probs=44.9
Q ss_pred HHH-HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHH-HHcCCEEE
Q 020528 59 DAE-EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVL-LAFGAELV 120 (325)
Q Consensus 59 ~a~-~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~-~~~Ga~v~ 120 (325)
.+. +.+.+++|.+.+|...+|.-|.+++..++..|.+++++.. +..+++.+ +.+|++.+
T Consensus 139 ~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~---~~~~~~~~~~~~g~~~~ 199 (336)
T 4b7c_A 139 FALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAG---GAEKCRFLVEELGFDGA 199 (336)
T ss_dssp HHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCCSEE
T ss_pred HHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHHcCCCEE
Confidence 444 6677888888888888899999999999999997665533 46677777 77887543
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=90.48 E-value=1.9 Score=38.30 Aligned_cols=57 Identities=30% Similarity=0.339 Sum_probs=43.7
Q ss_pred HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 020528 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 121 (325)
+.+.+++|.+.+|...+|.-|.+++..++..|.+++++.. ++.+++.++.+|++.+.
T Consensus 134 ~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~---~~~~~~~~~~~Ga~~~~ 190 (325)
T 3jyn_A 134 QTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVS---SPEKAAHAKALGAWETI 190 (325)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEES---SHHHHHHHHHHTCSEEE
T ss_pred HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCCEEE
Confidence 4466788878778777899999999999999997665543 56777788888875443
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=90.41 E-value=2.7 Score=37.49 Aligned_cols=61 Identities=23% Similarity=0.199 Sum_probs=45.6
Q ss_pred HHHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q 020528 58 ADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 122 (325)
Q Consensus 58 ~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~ 122 (325)
..+.+...+++|.+.+|.+ +|..|.+++..|+.+|.+++++.. +..|++.++.+|++.++.
T Consensus 156 ~~~l~~~~~~~g~~VlV~G-aG~vG~~a~qla~~~Ga~Vi~~~~---~~~~~~~~~~lGa~~~i~ 216 (340)
T 3s2e_A 156 YKGLKVTDTRPGQWVVISG-IGGLGHVAVQYARAMGLRVAAVDI---DDAKLNLARRLGAEVAVN 216 (340)
T ss_dssp HHHHHTTTCCTTSEEEEEC-CSTTHHHHHHHHHHTTCEEEEEES---CHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHcCCCCCCEEEEEC-CCHHHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHHcCCCEEEe
Confidence 3456667778887777755 578999999999999997655533 577888889999865543
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=90.31 E-value=2.1 Score=38.47 Aligned_cols=57 Identities=25% Similarity=0.202 Sum_probs=44.0
Q ss_pred HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 020528 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 121 (325)
+...+++|.+.+|.+.+|.-|.+++..++..|.+++++.. +..+++.++.+|++.+.
T Consensus 161 ~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~---~~~~~~~~~~lGa~~~~ 217 (353)
T 4dup_A 161 QMAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAG---STGKCEACERLGAKRGI 217 (353)
T ss_dssp TTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHHTCSEEE
T ss_pred HhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhcCCCEEE
Confidence 5567788888888878899999999999999998655532 56677777888876543
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=90.13 E-value=3 Score=38.60 Aligned_cols=96 Identities=18% Similarity=0.288 Sum_probs=61.2
Q ss_pred EEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCC
Q 020528 72 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQF 151 (325)
Q Consensus 72 ~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 151 (325)
.|+..+.|..|..+|......|++++++ +.++.+++.++..|..++.-+..
T Consensus 6 ~viIiG~Gr~G~~va~~L~~~g~~vvvI---d~d~~~v~~~~~~g~~vi~GDat-------------------------- 56 (413)
T 3l9w_A 6 RVIIAGFGRFGQITGRLLLSSGVKMVVL---DHDPDHIETLRKFGMKVFYGDAT-------------------------- 56 (413)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEE---ECCHHHHHHHHHTTCCCEESCTT--------------------------
T ss_pred eEEEECCCHHHHHHHHHHHHCCCCEEEE---ECCHHHHHHHHhCCCeEEEcCCC--------------------------
Confidence 4666788999999999999999998887 33566677777777665444431
Q ss_pred CCCcchHhHHhchHHHHHhhhC-CCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEe
Q 020528 152 ENPANPKIHYETTGPEIWKGTG-GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVE 209 (325)
Q Consensus 152 ~n~~~~~~g~~t~~~Ei~~ql~-~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~ 209 (325)
. .+++++.+ ...|.||++++.-..-.-++...|.++|+.+||+-.
T Consensus 57 ----~---------~~~L~~agi~~A~~viv~~~~~~~n~~i~~~ar~~~p~~~Iiara 102 (413)
T 3l9w_A 57 ----R---------MDLLESAGAAKAEVLINAIDDPQTNLQLTEMVKEHFPHLQIIARA 102 (413)
T ss_dssp ----C---------HHHHHHTTTTTCSEEEECCSSHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred ----C---------HHHHHhcCCCccCEEEECCCChHHHHHHHHHHHHhCCCCeEEEEE
Confidence 1 01222221 245666666666555555566666667766666643
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=90.09 E-value=2.7 Score=37.33 Aligned_cols=58 Identities=24% Similarity=0.371 Sum_probs=44.3
Q ss_pred HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q 020528 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 122 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~ 122 (325)
+.+.+++|.+.+|...+|.-|.+++..++..|.+++++.+ +..+++.++.+|++.+..
T Consensus 142 ~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~---~~~~~~~~~~~ga~~~~~ 199 (334)
T 3qwb_A 142 EAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVAS---TDEKLKIAKEYGAEYLIN 199 (334)
T ss_dssp TTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEEEE
T ss_pred HhccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCcEEEe
Confidence 3456788878778777899999999999999997665543 467778888888765443
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=89.68 E-value=2.3 Score=37.64 Aligned_cols=60 Identities=30% Similarity=0.389 Sum_probs=46.3
Q ss_pred HHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q 020528 59 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 122 (325)
Q Consensus 59 ~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~ 122 (325)
.+.+...+++|.+.+|...+|.-|.+++..|+.+|.+++++. +..+++.++.+|++.++-
T Consensus 143 ~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~----~~~~~~~~~~lGa~~~i~ 202 (321)
T 3tqh_A 143 QALNQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA----SKRNHAFLKALGAEQCIN 202 (321)
T ss_dssp HHHHHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE----CHHHHHHHHHHTCSEEEE
T ss_pred HHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe----ccchHHHHHHcCCCEEEe
Confidence 455677888997777776789999999999999999866553 345678888999975443
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=89.60 E-value=6.7 Score=31.23 Aligned_cols=95 Identities=15% Similarity=0.156 Sum_probs=60.7
Q ss_pred EEEecCCChhHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCC
Q 020528 72 VLIEPTSGNTGIGLAFMAAAK-GYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQ 150 (325)
Q Consensus 72 ~vv~~ssGN~g~alA~~a~~~-g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 150 (325)
.++..+.|..|..+|...... |.+++++-. ++.+.+.++..|.+++..+..
T Consensus 41 ~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~---~~~~~~~~~~~g~~~~~gd~~------------------------- 92 (183)
T 3c85_A 41 QVLILGMGRIGTGAYDELRARYGKISLGIEI---REEAAQQHRSEGRNVISGDAT------------------------- 92 (183)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHCSCEEEEES---CHHHHHHHHHTTCCEEECCTT-------------------------
T ss_pred cEEEECCCHHHHHHHHHHHhccCCeEEEEEC---CHHHHHHHHHCCCCEEEcCCC-------------------------
Confidence 355557899999999998888 988877733 455566666666655433321
Q ss_pred CCCCcchHhHHhchHHHHHhhh--CCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEE
Q 020528 151 FENPANPKIHYETTGPEIWKGT--GGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGV 208 (325)
Q Consensus 151 ~~n~~~~~~g~~t~~~Ei~~ql--~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV 208 (325)
. .+.+++. -...|.||++++......-+...++..+|..+++..
T Consensus 93 -----~---------~~~l~~~~~~~~ad~vi~~~~~~~~~~~~~~~~~~~~~~~~ii~~ 138 (183)
T 3c85_A 93 -----D---------PDFWERILDTGHVKLVLLAMPHHQGNQTALEQLQRRNYKGQIAAI 138 (183)
T ss_dssp -----C---------HHHHHTBCSCCCCCEEEECCSSHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred -----C---------HHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHHHHCCCCEEEEE
Confidence 0 0111111 135788888888766555566677777777777764
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.45 E-value=3.6 Score=37.56 Aligned_cols=59 Identities=22% Similarity=0.272 Sum_probs=43.9
Q ss_pred HHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 020528 59 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120 (325)
Q Consensus 59 ~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 120 (325)
.+.+...+++|.+.+|.. +|.-|...+..|+.+|.+.++.+. .+..|++.++.+|++++
T Consensus 176 ~al~~~~~~~g~~VlV~G-aG~vG~~aiqlAk~~Ga~~Vi~~~--~~~~~~~~a~~lGa~~i 234 (398)
T 1kol_A 176 HGAVTAGVGPGSTVYVAG-AGPVGLAAAASARLLGAAVVIVGD--LNPARLAHAKAQGFEIA 234 (398)
T ss_dssp HHHHHTTCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEE--SCHHHHHHHHHTTCEEE
T ss_pred HHHHHcCCCCCCEEEEEC-CcHHHHHHHHHHHHCCCCeEEEEc--CCHHHHHHHHHcCCcEE
Confidence 344556678887766655 688999999999999985444443 35788889999999843
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=89.19 E-value=3 Score=37.68 Aligned_cols=59 Identities=31% Similarity=0.365 Sum_probs=44.2
Q ss_pred HHH-HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 020528 59 DAE-EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (325)
Q Consensus 59 ~a~-~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 121 (325)
.+. +...+++|.+.+|.. +|..|.+++..|+.+|.+++++. .+..+++.++.+|++.+.
T Consensus 179 ~al~~~~~~~~g~~VlV~G-~G~vG~~a~qla~~~Ga~Vi~~~---~~~~~~~~~~~lGa~~vi 238 (363)
T 3uog_A 179 FALVEKGHLRAGDRVVVQG-TGGVALFGLQIAKATGAEVIVTS---SSREKLDRAFALGADHGI 238 (363)
T ss_dssp HHHTTTTCCCTTCEEEEES-SBHHHHHHHHHHHHTTCEEEEEE---SCHHHHHHHHHHTCSEEE
T ss_pred HHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEe---cCchhHHHHHHcCCCEEE
Confidence 444 567778887777766 88899999999999999766653 356777788888885444
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=89.02 E-value=3.2 Score=37.13 Aligned_cols=54 Identities=24% Similarity=0.322 Sum_probs=44.2
Q ss_pred HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020528 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 119 (325)
+...+++|.+.+|...+|.-|.+++..|+..|.+++++ .+..+++.++.+|++.
T Consensus 144 ~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~----~~~~~~~~~~~lGa~~ 197 (343)
T 3gaz_A 144 DRAQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT----ARGSDLEYVRDLGATP 197 (343)
T ss_dssp TTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE----ECHHHHHHHHHHTSEE
T ss_pred HhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE----eCHHHHHHHHHcCCCE
Confidence 56777888788887778999999999999999976655 2467788888999987
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=88.43 E-value=4.4 Score=36.51 Aligned_cols=57 Identities=25% Similarity=0.311 Sum_probs=43.2
Q ss_pred HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 020528 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 121 (325)
+.+.+++|.+.+|...+|.-|.+++..|+..|.+++++.+ +..+++.++.+|++.+.
T Consensus 157 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~---~~~~~~~~~~~Ga~~~~ 213 (362)
T 2c0c_A 157 ELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCS---SDEKSAFLKSLGCDRPI 213 (362)
T ss_dssp HHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEEE
T ss_pred HhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEEC---CHHHHHHHHHcCCcEEE
Confidence 4566788877777776899999999999999997555543 46777778888886543
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=88.40 E-value=2.2 Score=38.17 Aligned_cols=60 Identities=27% Similarity=0.412 Sum_probs=43.6
Q ss_pred HHH-HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 020528 59 DAE-EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (325)
Q Consensus 59 ~a~-~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 121 (325)
.+. +.+.+++|.+.+|...+|.-|.+++..|+..|.+++++.. +..+++.++.+|++.+.
T Consensus 149 ~~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~---~~~~~~~~~~~ga~~v~ 209 (342)
T 4eye_A 149 FAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVN---RTAATEFVKSVGADIVL 209 (342)
T ss_dssp HHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES---SGGGHHHHHHHTCSEEE
T ss_pred HHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhcCCcEEe
Confidence 344 5677788888888887799999999999999997666654 23455666667775443
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=87.37 E-value=2 Score=38.99 Aligned_cols=51 Identities=27% Similarity=0.107 Sum_probs=40.3
Q ss_pred CCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 020528 67 RPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (325)
Q Consensus 67 ~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 121 (325)
++|.+.+|.+.+|..|.+.+..|+.+|.+++++. +..|++.++.+|++.++
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~----~~~~~~~~~~lGa~~vi 213 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC----SPHNFDLAKSRGAEEVF 213 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE----CGGGHHHHHHTTCSEEE
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe----CHHHHHHHHHcCCcEEE
Confidence 6777777877779999999999999999866553 35678888899986544
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=87.12 E-value=6.4 Score=34.93 Aligned_cols=63 Identities=21% Similarity=0.191 Sum_probs=47.6
Q ss_pred HHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 020528 59 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 59 ~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 124 (325)
.+.....+.+|.+.+|. ++|.-|...+..|+.+|...++.+.. ++.|++.++.+||+.++...
T Consensus 151 ~~~~~~~~~~g~~VlV~-GaG~vG~~aiq~ak~~G~~~vi~~~~--~~~k~~~a~~lGa~~~i~~~ 213 (346)
T 4a2c_A 151 HAFHLAQGCENKNVIII-GAGTIGLLAIQCAVALGAKSVTAIDI--SSEKLALAKSFGAMQTFNSS 213 (346)
T ss_dssp HHHHHTTCCTTSEEEEE-CCSHHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHHTTCSEEEETT
T ss_pred HHHHHhccCCCCEEEEE-CCCCcchHHHHHHHHcCCcEEEEEec--hHHHHHHHHHcCCeEEEeCC
Confidence 34555666788676665 56888999899999999988777643 57889999999997665543
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=86.64 E-value=3.8 Score=36.71 Aligned_cols=58 Identities=21% Similarity=0.219 Sum_probs=43.2
Q ss_pred HHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHcCCEEE
Q 020528 59 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGY-RLIITMPASMSLERRMVLLAFGAELV 120 (325)
Q Consensus 59 ~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~-~~~i~~p~~~~~~~~~~~~~~Ga~v~ 120 (325)
.+.+...+++|.+.+|.+ +|.-|.+.+..|+.+|. +++++ +.++.|++.++.+|++.+
T Consensus 157 ~al~~~~~~~g~~VlV~G-aG~vG~~a~qla~~~Ga~~Vi~~---~~~~~~~~~~~~lGa~~v 215 (352)
T 3fpc_A 157 HGAELANIKLGDTVCVIG-IGPVGLMSVAGANHLGAGRIFAV---GSRKHCCDIALEYGATDI 215 (352)
T ss_dssp HHHHHTTCCTTCCEEEEC-CSHHHHHHHHHHHTTTCSSEEEE---CCCHHHHHHHHHHTCCEE
T ss_pred HHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEE---CCCHHHHHHHHHhCCceE
Confidence 455667778887777765 68999999999999998 45543 335778888888888643
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=86.60 E-value=4 Score=36.97 Aligned_cols=60 Identities=20% Similarity=0.217 Sum_probs=43.5
Q ss_pred HHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 020528 59 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (325)
Q Consensus 59 ~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 121 (325)
.+.+...+++|.+.+|.+ +|..|.+.+..|+.+|.+-++.+. .++.+.+.++.+|++.+.
T Consensus 173 ~~l~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~--~~~~~~~~a~~lGa~~vi 232 (370)
T 4ej6_A 173 HGVDLSGIKAGSTVAILG-GGVIGLLTVQLARLAGATTVILST--RQATKRRLAEEVGATATV 232 (370)
T ss_dssp HHHHHHTCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEC--SCHHHHHHHHHHTCSEEE
T ss_pred HHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHcCCCEEE
Confidence 445566678887777765 588999999999999985444443 357788888888986544
|
| >3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=86.17 E-value=4.3 Score=36.88 Aligned_cols=52 Identities=27% Similarity=0.317 Sum_probs=39.2
Q ss_pred CCCeEEEec-CCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q 020528 68 PGESVLIEP-TSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 122 (325)
Q Consensus 68 ~g~~~vv~~-ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~ 122 (325)
+|.+.+|.. .+|..|.+.+..|+.+|.+++++.. ++.|++.++.+|++.++.
T Consensus 170 ~g~~vlV~gag~G~vG~~a~q~a~~~Ga~Vi~~~~---~~~~~~~~~~lGa~~~~~ 222 (379)
T 3iup_A 170 EGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVR---KQEQADLLKAQGAVHVCN 222 (379)
T ss_dssp TTCSCEEESSTTSHHHHHHHHHHHHHTCCEEEEES---SHHHHHHHHHTTCSCEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEC---CHHHHHHHHhCCCcEEEe
Confidence 344666763 7888999999999999998666543 678888888999864443
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=86.09 E-value=6.9 Score=34.58 Aligned_cols=54 Identities=26% Similarity=0.345 Sum_probs=40.4
Q ss_pred HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020528 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 118 (325)
+...+++|.+.+|+..+|..|.+++..++..|.+++++.. +..+++.++.+|++
T Consensus 139 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~---~~~~~~~~~~~g~~ 192 (333)
T 1v3u_A 139 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKIAYLKQIGFD 192 (333)
T ss_dssp TTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCS
T ss_pred HhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHhcCCc
Confidence 4566778878888888899999999999999987655532 35566666777764
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=86.06 E-value=5.6 Score=35.43 Aligned_cols=58 Identities=24% Similarity=0.269 Sum_probs=42.3
Q ss_pred HHHHh-CCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020528 59 DAEEK-GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119 (325)
Q Consensus 59 ~a~~~-g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 119 (325)
.+..+ ..+++|.+.+|...+|..|.+++..++..|.+++++.. +..+++.++.+|++.
T Consensus 156 ~al~~~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~---~~~~~~~~~~~ga~~ 214 (343)
T 2eih_A 156 QMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAG---SEDKLRRAKALGADE 214 (343)
T ss_dssp HHHTTTSCCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHHTCSE
T ss_pred HHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHhcCCCE
Confidence 34444 46778888888888899999999999999987655533 456666667777653
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=86.02 E-value=6.8 Score=34.91 Aligned_cols=59 Identities=24% Similarity=0.209 Sum_probs=42.2
Q ss_pred HHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 020528 59 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAK-GYRLIITMPASMSLERRMVLLAFGAELV 120 (325)
Q Consensus 59 ~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~-g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 120 (325)
.+.++..+++|.+.+|+..+|..|.+++..++.. |.+++++.. ++.+++.++.+|++.+
T Consensus 161 ~~l~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~---~~~~~~~~~~~g~~~~ 220 (347)
T 1jvb_A 161 RAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDV---REEAVEAAKRAGADYV 220 (347)
T ss_dssp HHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEES---SHHHHHHHHHHTCSEE
T ss_pred HHHHhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcC---CHHHHHHHHHhCCCEE
Confidence 4445566788878888888779999999999988 987554432 4566666777777543
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=86.00 E-value=6 Score=35.46 Aligned_cols=56 Identities=20% Similarity=0.213 Sum_probs=42.3
Q ss_pred HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 020528 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 120 (325)
+...+++|.+.+|+..+|..|.+++..++..|.+++++.. +..+++.++.+|++.+
T Consensus 156 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~---~~~~~~~~~~~g~~~~ 211 (354)
T 2j8z_A 156 LVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAG---SQKKLQMAEKLGAAAG 211 (354)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES---CHHHHHHHHHHTCSEE
T ss_pred HhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEE
Confidence 4566788878788777899999999999999987655533 4567777777887643
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=85.90 E-value=8.7 Score=34.35 Aligned_cols=58 Identities=29% Similarity=0.414 Sum_probs=43.1
Q ss_pred HHH-HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020528 59 DAE-EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119 (325)
Q Consensus 59 ~a~-~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 119 (325)
.+. +...+++|.+.+|...+|..|.+++..++..|.+++++.. +..+++.++.+|++.
T Consensus 160 ~al~~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~---~~~~~~~~~~~ga~~ 218 (351)
T 1yb5_A 160 RALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAG---TEEGQKIVLQNGAHE 218 (351)
T ss_dssp HHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSE
T ss_pred HHHHHhhCCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeC---ChhHHHHHHHcCCCE
Confidence 344 3566788888888888899999999999999987655533 456666777777754
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=85.77 E-value=3.7 Score=36.92 Aligned_cols=62 Identities=15% Similarity=0.087 Sum_probs=45.0
Q ss_pred HHHHh-CCCCCC-CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEE
Q 020528 59 DAEEK-GLIRPG-ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELV 120 (325)
Q Consensus 59 ~a~~~-g~~~~g-~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~ 120 (325)
.+..+ +.+++| .+.+|.+.+|..|.+++..|+.+|.+.+++...... ..+.+.++.+|++.+
T Consensus 156 ~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~v 220 (364)
T 1gu7_A 156 LMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQV 220 (364)
T ss_dssp HHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEE
T ss_pred HHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHHhcCCeEE
Confidence 34444 567888 787777777999999999999999987777654433 344566678898643
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=85.76 E-value=4.5 Score=36.00 Aligned_cols=58 Identities=21% Similarity=0.304 Sum_probs=42.2
Q ss_pred HHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 020528 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (325)
Q Consensus 61 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 121 (325)
.+...+++|.+.+|...+|.-|.+++..|+..|.+++++.... .+++.++.+|++.+.
T Consensus 137 ~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~---~~~~~~~~lga~~~~ 194 (340)
T 3gms_A 137 TETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNN---KHTEELLRLGAAYVI 194 (340)
T ss_dssp HTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSS---TTHHHHHHHTCSEEE
T ss_pred HHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCH---HHHHHHHhCCCcEEE
Confidence 3566778888888887778999999999999998766665432 345566667776443
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=85.68 E-value=4.5 Score=36.30 Aligned_cols=60 Identities=27% Similarity=0.356 Sum_probs=46.5
Q ss_pred HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEE
Q 020528 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVL 121 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~ 121 (325)
+.+.+++|.+.+|.+.+|..|.+++..|+.+|.+.++++..... ..+.+.++.+|++-++
T Consensus 161 ~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi 221 (357)
T 1zsy_A 161 DFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVI 221 (357)
T ss_dssp HSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHHHTTCSEEE
T ss_pred HHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHHhcCCcEEE
Confidence 44667888787777777999999999999999998877765543 4567788889986543
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=85.35 E-value=4.4 Score=36.23 Aligned_cols=50 Identities=22% Similarity=0.296 Sum_probs=36.9
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 123 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 123 (325)
..+|.+.+|.-|.+++..|+.+|.+++++.+ +..+++.++.+|++.+...
T Consensus 167 ~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~---~~~~~~~~~~~Ga~~~~~~ 216 (349)
T 3pi7_A 167 AFVMTAGASQLCKLIIGLAKEEGFRPIVTVR---RDEQIALLKDIGAAHVLNE 216 (349)
T ss_dssp EEEESSTTSHHHHHHHHHHHHHTCEEEEEES---CGGGHHHHHHHTCSEEEET
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCCEEEEC
Confidence 5667778899999999999999997666543 3456677778888654433
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=85.23 E-value=8.6 Score=30.94 Aligned_cols=54 Identities=35% Similarity=0.524 Sum_probs=38.1
Q ss_pred HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020528 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 118 (325)
+...+++|++.+|+..+|..|.+++..++..|.+++++.. +..+.+.++.+|++
T Consensus 32 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~---~~~~~~~~~~~g~~ 85 (198)
T 1pqw_A 32 EVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAG---SDAKREMLSRLGVE 85 (198)
T ss_dssp TTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEES---SHHHHHHHHTTCCS
T ss_pred HHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCC
Confidence 3456778877777777889999999999988987655432 35555556666653
|
| >3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=85.19 E-value=4.3 Score=35.96 Aligned_cols=63 Identities=24% Similarity=0.174 Sum_probs=45.5
Q ss_pred HHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCC--CHHHHHHHH----HcCCEEEEeC
Q 020528 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM--SLERRMVLL----AFGAELVLTD 123 (325)
Q Consensus 61 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~--~~~~~~~~~----~~Ga~v~~~~ 123 (325)
++.|.+.+|.+..++.-.+|.+.|++.+++++|++++++.|+.. +..-++.++ ..|+.+..+.
T Consensus 138 e~~g~l~~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~ 206 (307)
T 3tpf_A 138 EWNKMQNGIAKVAFIGDSNNMCNSWLITAAILGFEISIAMPKNYKISPEIWEFAMKQALISGAKISLGY 206 (307)
T ss_dssp HTTCCGGGCCEEEEESCSSHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEES
T ss_pred HHhCCCCCCCEEEEEcCCCccHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 34565544545555555689999999999999999999999873 333334333 7799988876
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=85.15 E-value=7.4 Score=34.26 Aligned_cols=58 Identities=26% Similarity=0.237 Sum_probs=41.8
Q ss_pred HHHH-hCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020528 59 DAEE-KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119 (325)
Q Consensus 59 ~a~~-~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 119 (325)
.+.. ...+++|.+.+|+..+|.-|.+++..++..|.+++++.. +..+++.++.+|++.
T Consensus 130 ~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~---~~~~~~~~~~~g~~~ 188 (327)
T 1qor_A 130 YLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVG---TAQKAQSALKAGAWQ 188 (327)
T ss_dssp HHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEES---SHHHHHHHHHHTCSE
T ss_pred HHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCE
Confidence 3443 566788878888887899999999999999987655533 356666666667643
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=85.00 E-value=7.8 Score=34.26 Aligned_cols=58 Identities=22% Similarity=0.256 Sum_probs=41.4
Q ss_pred HHHH-hCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020528 59 DAEE-KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119 (325)
Q Consensus 59 ~a~~-~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 119 (325)
.+.. .+.+++|.+.+|+..+|..|.+++..++..|.+++++.. +..+++.++.+|++.
T Consensus 135 ~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~---~~~~~~~~~~~g~~~ 193 (333)
T 1wly_A 135 YLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVS---TEEKAETARKLGCHH 193 (333)
T ss_dssp HHHHTTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHHTCSE
T ss_pred HHHHHhhCCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCCE
Confidence 3443 566788878788777899999999999999987655533 355666666677653
|
| >1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2 | Back alignment and structure |
|---|
Probab=84.98 E-value=4 Score=33.52 Aligned_cols=76 Identities=21% Similarity=0.309 Sum_probs=54.6
Q ss_pred CCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEe-------cC--CCCHHHHHHH
Q 020528 42 MEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITM-------PA--SMSLERRMVL 112 (325)
Q Consensus 42 ~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~-------p~--~~~~~~~~~~ 112 (325)
.+|.--+-+......+.+|.+.|. ++.||..++|.++..++-.. -| +.++|. |. ..+++..+.+
T Consensus 29 ~~~G~eNT~~tl~la~era~e~~I----k~iVVASssG~TA~k~~e~~--~~-~lVvVTh~~GF~~pg~~e~~~e~~~~L 101 (206)
T 1t57_A 29 EEPGKENTERVLELVGERADQLGI----RNFVVASVSGETALRLSEMV--EG-NIVSVTHHAGFREKGQLELEDEARDAL 101 (206)
T ss_dssp SSCSGGGHHHHHHHHHHHHHHHTC----CEEEEECSSSHHHHHHHTTC--CS-EEEEECCCTTSSSTTCCSSCHHHHHHH
T ss_pred cCCCcccHHHHHHHHHHHHHHcCC----CEEEEEeCCCHHHHHHHHHc--cC-CEEEEeCcCCCCCCCCCcCCHHHHHHH
Confidence 356666777788888889999886 25555555588886655432 45 777776 32 3689999999
Q ss_pred HHcCCEEEEeCC
Q 020528 113 LAFGAELVLTDP 124 (325)
Q Consensus 113 ~~~Ga~v~~~~~ 124 (325)
+..|.+|+.-..
T Consensus 102 ~~~G~~V~t~tH 113 (206)
T 1t57_A 102 LERGVNVYAGSH 113 (206)
T ss_dssp HHHTCEEECCSC
T ss_pred HhCCCEEEEeec
Confidence 999999987654
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=84.54 E-value=10 Score=33.87 Aligned_cols=54 Identities=22% Similarity=0.386 Sum_probs=40.8
Q ss_pred HhCCCCCC--CeEEEecCCChhHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHH-cCCE
Q 020528 62 EKGLIRPG--ESVLIEPTSGNTGIGLAFMAAAKGY-RLIITMPASMSLERRMVLLA-FGAE 118 (325)
Q Consensus 62 ~~g~~~~g--~~~vv~~ssGN~g~alA~~a~~~g~-~~~i~~p~~~~~~~~~~~~~-~Ga~ 118 (325)
+.+.+++| .+.+|+..+|.-|.+++..++..|. +++++.. +..+++.++. +|++
T Consensus 152 ~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~---~~~~~~~~~~~~g~~ 209 (357)
T 2zb4_A 152 EKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICG---THEKCILLTSELGFD 209 (357)
T ss_dssp HHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEES---CHHHHHHHHHTSCCS
T ss_pred HhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeC---CHHHHHHHHHHcCCc
Confidence 56677888 8888888889999999999999998 6655533 3556666665 7764
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.43 E-value=8.7 Score=34.18 Aligned_cols=58 Identities=22% Similarity=0.254 Sum_probs=41.3
Q ss_pred HHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020528 59 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119 (325)
Q Consensus 59 ~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 119 (325)
.+.++..+++|.+.+|+..+|..|.+++..++..|.+++++... ..+.+.++.+|++.
T Consensus 160 ~~l~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~---~~~~~~~~~~g~~~ 217 (347)
T 2hcy_A 160 KALKSANLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGG---EGKEELFRSIGGEV 217 (347)
T ss_dssp HHHHTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECS---TTHHHHHHHTTCCE
T ss_pred HHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCC---HHHHHHHHHcCCce
Confidence 44555557788788888888999999999999999876655432 23445566677653
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=84.32 E-value=9.4 Score=34.22 Aligned_cols=59 Identities=22% Similarity=0.167 Sum_probs=42.7
Q ss_pred HHHHh--CCCCCCCeEEEecCCChhHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 020528 59 DAEEK--GLIRPGESVLIEPTSGNTGIGLAFMAAAK-GYRLIITMPASMSLERRMVLLAFGAELVL 121 (325)
Q Consensus 59 ~a~~~--g~~~~g~~~vv~~ssGN~g~alA~~a~~~-g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 121 (325)
.+.++ ..+++|.+.+|... |..|..++..|+.+ |.+++++.+ ++.|++.++.+||+.++
T Consensus 175 ~al~~~~~~~~~g~~VlV~Ga-G~vG~~avqlak~~~Ga~Vi~~~~---~~~~~~~~~~lGa~~vi 236 (359)
T 1h2b_A 175 RAVKKAARTLYPGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDV---KEEKLKLAERLGADHVV 236 (359)
T ss_dssp HHHHHHHTTCCTTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEES---SHHHHHHHHHTTCSEEE
T ss_pred HHHHhhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHHHHhCCCEEE
Confidence 44544 66788877666665 88999998999998 987554432 56788888889986443
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=84.32 E-value=2.8 Score=39.18 Aligned_cols=57 Identities=28% Similarity=0.331 Sum_probs=46.5
Q ss_pred CCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 020528 64 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 123 (325)
Q Consensus 64 g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 123 (325)
..+++|.+.+|...+|..|.+.+..|+.+|.+.+++.. +..|++.++.+|++.+...
T Consensus 224 ~~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~---~~~~~~~~~~lGa~~vi~~ 280 (456)
T 3krt_A 224 AGMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVS---SPQKAEICRAMGAEAIIDR 280 (456)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHHTCCEEEET
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEEC---CHHHHHHHHhhCCcEEEec
Confidence 46788877777777799999999999999998877763 6888999999999765543
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=83.94 E-value=3.7 Score=38.13 Aligned_cols=55 Identities=24% Similarity=0.322 Sum_probs=45.2
Q ss_pred CCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 020528 64 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (325)
Q Consensus 64 g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 121 (325)
..+++|.+.+|...+|.-|.+++..|+..|.+.+++.. +..+++.++.+|++.+.
T Consensus 216 ~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~---~~~~~~~~~~lGa~~~i 270 (447)
T 4a0s_A 216 AQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVS---SAQKEAAVRALGCDLVI 270 (447)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCCCEE
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhcCCCEEE
Confidence 56788878888777799999999999999998777753 67888889999996543
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=83.69 E-value=2 Score=37.94 Aligned_cols=59 Identities=20% Similarity=0.104 Sum_probs=44.4
Q ss_pred HHHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 020528 58 ADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (325)
Q Consensus 58 ~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 121 (325)
..+.+...+++|.+.+|.+. |..|.+++..|+.+|.+++++. +..|++.++.+|++.+.
T Consensus 132 ~~al~~~~~~~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~----~~~~~~~~~~lGa~~v~ 190 (315)
T 3goh_A 132 WQAFEKIPLTKQREVLIVGF-GAVNNLLTQMLNNAGYVVDLVS----ASLSQALAAKRGVRHLY 190 (315)
T ss_dssp HHHHTTSCCCSCCEEEEECC-SHHHHHHHHHHHHHTCEEEEEC----SSCCHHHHHHHTEEEEE
T ss_pred HHHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEE----ChhhHHHHHHcCCCEEE
Confidence 34556777888877777666 9999999999999999766654 34466777888887655
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=83.69 E-value=9.6 Score=32.36 Aligned_cols=34 Identities=18% Similarity=0.279 Sum_probs=22.9
Q ss_pred CCeEEEecCCCh--hHHHHHHHHHHcCCeEEEEecC
Q 020528 69 GESVLIEPTSGN--TGIGLAFMAAAKGYRLIITMPA 102 (325)
Q Consensus 69 g~~~vv~~ssGN--~g~alA~~a~~~g~~~~i~~p~ 102 (325)
|+..|||..+|+ -|.++|....+.|.++++.-..
T Consensus 6 gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~ 41 (256)
T 4fs3_A 6 NKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRK 41 (256)
T ss_dssp TCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECC
Confidence 346788875553 6677777777888876665443
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=83.23 E-value=5.9 Score=35.94 Aligned_cols=59 Identities=25% Similarity=0.286 Sum_probs=44.0
Q ss_pred HHHHhCC-CCCCCeEEEecCCChhHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHcCCEEEE
Q 020528 59 DAEEKGL-IRPGESVLIEPTSGNTGIGLAFMAAAKGY-RLIITMPASMSLERRMVLLAFGAELVL 121 (325)
Q Consensus 59 ~a~~~g~-~~~g~~~vv~~ssGN~g~alA~~a~~~g~-~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 121 (325)
.+.+... +++|.+.+|.. +|..|.+++..|+.+|. +++++.+ ++.+++.++.+|++.++
T Consensus 185 ~al~~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~---~~~~~~~~~~lGa~~vi 245 (380)
T 1vj0_A 185 HAFDEYPESFAGKTVVIQG-AGPLGLFGVVIARSLGAENVIVIAG---SPNRLKLAEEIGADLTL 245 (380)
T ss_dssp HHHHTCSSCCBTCEEEEEC-CSHHHHHHHHHHHHTTBSEEEEEES---CHHHHHHHHHTTCSEEE
T ss_pred HHHHhcCCCCCCCEEEEEC-cCHHHHHHHHHHHHcCCceEEEEcC---CHHHHHHHHHcCCcEEE
Confidence 4445556 77887777777 89999999999999994 7665543 56788888889986443
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=82.48 E-value=8.6 Score=34.60 Aligned_cols=57 Identities=21% Similarity=0.280 Sum_probs=41.0
Q ss_pred HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 020528 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 121 (325)
+...+++|.+.+|.+ +|.-|.+++..|+.+|.+.++.+. .++.+++.++.+|++.++
T Consensus 184 ~~~~~~~g~~VlV~G-aG~vG~~a~qlak~~Ga~~Vi~~~--~~~~~~~~a~~lGa~~vi 240 (371)
T 1f8f_A 184 NALKVTPASSFVTWG-AGAVGLSALLAAKVCGASIIIAVD--IVESRLELAKQLGATHVI 240 (371)
T ss_dssp TTTCCCTTCEEEEES-CSHHHHHHHHHHHHHTCSEEEEEE--SCHHHHHHHHHHTCSEEE
T ss_pred hccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEC--CCHHHHHHHHHcCCCEEe
Confidence 456678887777765 688999999999999985333332 256778888888886443
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=82.16 E-value=6 Score=36.22 Aligned_cols=54 Identities=30% Similarity=0.393 Sum_probs=40.1
Q ss_pred CCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 020528 65 LIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (325)
Q Consensus 65 ~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 121 (325)
.+++|.+.+|.+ .|.-|.+.+..|+.+|..-++.+. .++.|++.++.+|++.++
T Consensus 210 ~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~--~~~~~~~~~~~lGa~~vi 263 (404)
T 3ip1_A 210 GIRPGDNVVILG-GGPIGLAAVAILKHAGASKVILSE--PSEVRRNLAKELGADHVI 263 (404)
T ss_dssp CCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEC--SCHHHHHHHHHHTCSEEE
T ss_pred CCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHcCCCEEE
Confidence 578887777765 588999999999999994444433 357888888888986544
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=81.98 E-value=4.2 Score=36.33 Aligned_cols=59 Identities=15% Similarity=0.129 Sum_probs=42.1
Q ss_pred HHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 020528 59 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (325)
Q Consensus 59 ~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 121 (325)
.+.++..+++|.+.+|.+ +|.-|.+++..|+.+|.+++++.. ++.+++.++.+|++.+.
T Consensus 167 ~~l~~~~~~~g~~VlV~G-aG~vG~~a~qla~~~Ga~Vi~~~~---~~~~~~~~~~lGa~~v~ 225 (348)
T 3two_A 167 SPLKFSKVTKGTKVGVAG-FGGLGSMAVKYAVAMGAEVSVFAR---NEHKKQDALSMGVKHFY 225 (348)
T ss_dssp HHHHHTTCCTTCEEEEES-CSHHHHHHHHHHHHTTCEEEEECS---SSTTHHHHHHTTCSEEE
T ss_pred HHHHhcCCCCCCEEEEEC-CcHHHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHhcCCCeec
Confidence 444555678887777754 589999999999999997655533 34456677788886655
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=81.63 E-value=11 Score=33.26 Aligned_cols=58 Identities=24% Similarity=0.248 Sum_probs=42.0
Q ss_pred HHH-HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH-HcCCEE
Q 020528 59 DAE-EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLL-AFGAEL 119 (325)
Q Consensus 59 ~a~-~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~-~~Ga~v 119 (325)
.+. +...+++|.+.+|...+|.-|.+++..++..|.+++++.. +..+++.++ .+|++.
T Consensus 145 ~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~---~~~~~~~~~~~~g~~~ 204 (345)
T 2j3h_A 145 AGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAG---SKEKVDLLKTKFGFDD 204 (345)
T ss_dssp HHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTSCCSE
T ss_pred HHHHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHHcCCce
Confidence 344 4566788878888887899999999999999987555432 456667776 577743
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=81.53 E-value=12 Score=33.28 Aligned_cols=51 Identities=27% Similarity=0.292 Sum_probs=37.2
Q ss_pred CCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020528 65 LIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119 (325)
Q Consensus 65 ~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 119 (325)
.+++|.+.+|... |..|.+++..++.+|.+++++. .+..+++.++.+|++.
T Consensus 161 ~~~~g~~VlV~Ga-G~vG~~~~~~a~~~Ga~Vi~~~---~~~~~~~~~~~lGa~~ 211 (339)
T 1rjw_A 161 GAKPGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVD---IGDEKLELAKELGADL 211 (339)
T ss_dssp TCCTTCEEEEECC-STTHHHHHHHHHHTTCEEEEEC---SCHHHHHHHHHTTCSE
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHCCCCE
Confidence 4677777777666 6699999999999998655443 2467777777888753
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=81.41 E-value=11 Score=33.60 Aligned_cols=58 Identities=24% Similarity=0.268 Sum_probs=42.3
Q ss_pred HHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 020528 59 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120 (325)
Q Consensus 59 ~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 120 (325)
.+.+...+++|.+.+|.+ +|.-|.+++..|+.+|.++ +.+. .+..+++.++.+|++.+
T Consensus 159 ~al~~~~~~~g~~VlV~G-aG~vG~~a~qla~~~Ga~V-i~~~--~~~~~~~~~~~lGa~~~ 216 (352)
T 1e3j_A 159 HACRRAGVQLGTTVLVIG-AGPIGLVSVLAAKAYGAFV-VCTA--RSPRRLEVAKNCGADVT 216 (352)
T ss_dssp HHHHHHTCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEE-EEEE--SCHHHHHHHHHTTCSEE
T ss_pred HHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCEE-EEEc--CCHHHHHHHHHhCCCEE
Confidence 344555677887777765 5889999999999999983 4333 35778888889998643
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=81.32 E-value=14 Score=33.53 Aligned_cols=57 Identities=26% Similarity=0.228 Sum_probs=42.4
Q ss_pred HHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHcCCEE
Q 020528 59 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGY-RLIITMPASMSLERRMVLLAFGAEL 119 (325)
Q Consensus 59 ~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~-~~~i~~p~~~~~~~~~~~~~~Ga~v 119 (325)
.+.+...+++|.+.+|.. +|.-|..++..|+.+|. +++++.+ +..+++.++.+|+++
T Consensus 176 ~al~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~---~~~~~~~a~~lGa~~ 233 (398)
T 2dph_A 176 HGCVSAGVKPGSHVYIAG-AGPVGRCAAAGARLLGAACVIVGDQ---NPERLKLLSDAGFET 233 (398)
T ss_dssp HHHHHTTCCTTCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEEES---CHHHHHHHHTTTCEE
T ss_pred HHHHHcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcC---CHHHHHHHHHcCCcE
Confidence 445566778887766665 58899999999999998 5554432 567888889999974
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=81.30 E-value=12 Score=31.60 Aligned_cols=54 Identities=15% Similarity=0.255 Sum_probs=40.4
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 124 (325)
++.+|+..+|.-|.++|......|.+++++.... .......++..|.++..+..
T Consensus 5 k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~-~~~~~~~l~~~~~~~~~~~~ 58 (255)
T 2q2v_A 5 KTALVTGSTSGIGLGIAQVLARAGANIVLNGFGD-PAPALAEIARHGVKAVHHPA 58 (255)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSC-CHHHHHHHHTTSCCEEEECC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc-hHHHHHHHHhcCCceEEEeC
Confidence 4778999999999999999888999877664433 35555666667877776654
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=81.12 E-value=8.4 Score=33.06 Aligned_cols=73 Identities=5% Similarity=-0.061 Sum_probs=51.2
Q ss_pred CCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHHHHHh
Q 020528 69 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRDK 141 (325)
Q Consensus 69 g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 141 (325)
|+..|||.+++--|.++|....+.|.+++++-.........+.+...|.+++.+..+ .+.++..+...+..++
T Consensus 7 gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~ 80 (258)
T 4gkb_A 7 DKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAFLDALAQRQPRATYLPVELQDDAQCRDAVAQTIAT 80 (258)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHHHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHHHH
Confidence 347889999988999999999999999888877665666677777777766665432 2344444444444444
|
| >1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A | Back alignment and structure |
|---|
Probab=81.03 E-value=11 Score=33.35 Aligned_cols=62 Identities=19% Similarity=0.246 Sum_probs=44.3
Q ss_pred HHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCC--CHHHHHHHH----HcCCEEEEeC
Q 020528 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM--SLERRMVLL----AFGAELVLTD 123 (325)
Q Consensus 61 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~--~~~~~~~~~----~~Ga~v~~~~ 123 (325)
++.|.++ |.+..++.-.+|.+.|++.+++++|++++++.|+.. +..-+..++ ..|+++..+.
T Consensus 148 e~~g~l~-gl~va~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~ 215 (315)
T 1pvv_A 148 EKKGTIK-GVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLH 215 (315)
T ss_dssp HHHSCCT-TCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEES
T ss_pred HHhCCcC-CcEEEEECCCcchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 3456543 334444444489999999999999999999999973 333334443 7899988876
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.02 E-value=8.5 Score=34.72 Aligned_cols=53 Identities=23% Similarity=0.194 Sum_probs=40.6
Q ss_pred CCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q 020528 66 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 122 (325)
Q Consensus 66 ~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~ 122 (325)
+++|.+.+|...+|.-|.+++..|+..|.+++++. +..+++.++.+|++.+.-
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~----~~~~~~~~~~lGa~~v~~ 233 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC----SQDASELVRKLGADDVID 233 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE----CGGGHHHHHHTTCSEEEE
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe----ChHHHHHHHHcCCCEEEE
Confidence 77887877877789999999999999998765543 235677788899875543
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=81.02 E-value=7.3 Score=34.74 Aligned_cols=50 Identities=30% Similarity=0.333 Sum_probs=38.3
Q ss_pred CCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 020528 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120 (325)
Q Consensus 68 ~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 120 (325)
+|.+.+|.+.+|.-|.+++..|+.+|.+++++. .+..+++.++.+|++.+
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~---~~~~~~~~~~~lGa~~v 199 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTA---SRNETIEWTKKMGADIV 199 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEC---CSHHHHHHHHHHTCSEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHhcCCcEE
Confidence 677777877889999999999999998655553 24677788888887543
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=80.81 E-value=10 Score=33.77 Aligned_cols=56 Identities=36% Similarity=0.408 Sum_probs=40.6
Q ss_pred HHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHcCCEE
Q 020528 59 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGY-RLIITMPASMSLERRMVLLAFGAEL 119 (325)
Q Consensus 59 ~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~-~~~i~~p~~~~~~~~~~~~~~Ga~v 119 (325)
.+.++..+ +|.+.+|... |..|.+++..++.+|. +++++.+ +..+++.++.+|++.
T Consensus 159 ~~l~~~~~-~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~---~~~~~~~~~~~Ga~~ 215 (348)
T 2d8a_A 159 DTVLAGPI-SGKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEP---SDFRRELAKKVGADY 215 (348)
T ss_dssp HHHTTSCC-TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECS---CHHHHHHHHHHTCSE
T ss_pred HHHHhcCC-CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECC---CHHHHHHHHHhCCCE
Confidence 44455566 7877777666 9999999999999998 6655533 466777777888753
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=80.45 E-value=12 Score=33.15 Aligned_cols=61 Identities=18% Similarity=0.243 Sum_probs=37.7
Q ss_pred HHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 020528 59 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAK-GYRLIITMPASMSLERRMVLLAFGAELVLTD 123 (325)
Q Consensus 59 ~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~-g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 123 (325)
.+.+...+++|.+.+|. ++|..|...+..++.+ |.+++++. .++.|++..+.+|++..+-.
T Consensus 154 ~~l~~~~~~~g~~VlV~-GaG~~g~~a~~~a~~~~g~~Vi~~~---~~~~r~~~~~~~Ga~~~i~~ 215 (348)
T 4eez_A 154 KAIKVSGVKPGDWQVIF-GAGGLGNLAIQYAKNVFGAKVIAVD---INQDKLNLAKKIGADVTINS 215 (348)
T ss_dssp HHHHHHTCCTTCEEEEE-CCSHHHHHHHHHHHHTSCCEEEEEE---SCHHHHHHHHHTTCSEEEEC
T ss_pred eeecccCCCCCCEEEEE-cCCCccHHHHHHHHHhCCCEEEEEE---CcHHHhhhhhhcCCeEEEeC
Confidence 34444456788676665 4565665555555544 66655553 35677888888888765543
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=80.25 E-value=9.3 Score=32.77 Aligned_cols=55 Identities=11% Similarity=0.002 Sum_probs=41.0
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 124 (325)
+..+|+..+|--|.++|......|.+++++-...........+...|.++..+..
T Consensus 32 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 86 (273)
T 3uf0_A 32 RTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDGVKEVADEIADGGGSAEAVVA 86 (273)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTHHHHHHHHHHTTTCEEEEEEC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHHHHhcCCcEEEEEe
Confidence 4788999999999999999999999987776332223445566777888777654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 325 | ||||
| d1z7wa1 | 320 | c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (C | 1e-109 | |
| d1o58a_ | 293 | c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cystei | 1e-89 | |
| d1y7la1 | 310 | c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (C | 1e-88 | |
| d1ve1a1 | 302 | c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (C | 6e-84 | |
| d1jbqa_ | 355 | c.79.1.1 (A:) Cystathionine beta-synthase {Human ( | 9e-82 | |
| d1fcja_ | 302 | c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cystei | 7e-81 | |
| d2bhsa1 | 292 | c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (C | 2e-71 | |
| d1wkva1 | 382 | c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (C | 2e-65 | |
| d1tdja1 | 331 | c.79.1.1 (A:5-335) Threonine deaminase {Escherichi | 4e-49 | |
| d1v71a1 | 318 | c.79.1.1 (A:6-323) Hypothetical protein C320.14 (S | 3e-40 | |
| d1ve5a1 | 310 | c.79.1.1 (A:2-311) Threonine deaminase {Thermus th | 1e-38 | |
| d1tyza_ | 338 | c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de | 2e-38 | |
| d1v8za1 | 386 | c.79.1.1 (A:1-386) Tryptophan synthase, beta-subun | 8e-35 | |
| d1j0aa_ | 325 | c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de | 2e-34 | |
| d1f2da_ | 341 | c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de | 5e-33 | |
| d1e5xa_ | 477 | c.79.1.1 (A:) Threonine synthase {Mouse-ear cress | 1e-29 | |
| d1qopb_ | 390 | c.79.1.1 (B:) Tryptophan synthase, beta-subunit {S | 1e-28 | |
| d1v7ca_ | 351 | c.79.1.1 (A:) Threonine synthase {Thermus thermoph | 3e-28 | |
| d1p5ja_ | 319 | c.79.1.1 (A:) L-serine dehydratase {Human (Homo sa | 8e-26 |
| >d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 320 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 319 bits (817), Expect = e-109
Identities = 259/319 (81%), Positives = 293/319 (91%)
Query: 6 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGL 65
S IAKDVTELIG TPLVYLN + +GCV R+AAKLEMMEPCSSVKDRIG+SMI+DAE+KGL
Sbjct: 1 SRIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGL 60
Query: 66 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 125
I+PGESVLIEPTSGNTG+GLAF AAAKGY+LIITMPASMS ERR++LLAFG ELVLTDPA
Sbjct: 61 IKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 120
Query: 126 RGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGT 185
+GMKGA+ KAEEI KTPN Y+LQQFENPANPKIHYETTGPEIWKGTGGKID VSGIGT
Sbjct: 121 KGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGT 180
Query: 186 GGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDE 245
GGT+TGAGKYLKE N +KLYGVEPVESA+LSGGKPGPHKIQGIGAGFIP VL+V+L+DE
Sbjct: 181 GGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDE 240
Query: 246 TVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERY 305
VQ+SS+E+I+ A+ LALKEGLLVGISSGAA AAAI++A+RPENAGKL V +FPSFGERY
Sbjct: 241 VVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENAGKLFVAIFPSFGERY 300
Query: 306 LSSVLFESVKKEAESMVFE 324
LS+VLF++ +KEAE+M FE
Sbjct: 301 LSTVLFDATRKEAEAMTFE 319
|
| >d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Thermotoga maritima [TaxId: 2336]
Score = 267 bits (684), Expect = 1e-89
Identities = 154/301 (51%), Positives = 202/301 (67%), Gaps = 10/301 (3%)
Query: 10 KDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPG 69
+ LIG TP+V L+ I +RI KLE P SVKDR MI DAE++GL++ G
Sbjct: 2 HMMERLIGSTPIVRLDSID----SRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNG 57
Query: 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMK 129
++EPTSGN GI +A + A +G+R+I+TMP +MS+ERR VL GAELVLT GMK
Sbjct: 58 ---IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMK 114
Query: 130 GAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTV 189
GAV+KA EI +T +++L QFENP N H TTGPEI K +IDA V+G+GTGGT+
Sbjct: 115 GAVEKALEISRET-GAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTI 173
Query: 190 TGAGKYLKEHNPE-IKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQ 248
+G G+ LK +K+ VEP +S VLSGG+PG H IQGIGAGF+P +LD +++DE +
Sbjct: 174 SGVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIGAGFVPKILDRSVIDEVIT 233
Query: 249 ISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSS 308
+ EEA E A+ LA KEGLLVGISSGA AAA+++A++ +V V P ERYLS
Sbjct: 234 VEDEEAYEMARYLAKKEGLLVGISSGANVAAALKVAQKLG-PDARVVTVAPDHAERYLSI 292
Query: 309 V 309
+
Sbjct: 293 L 293
|
| >d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]} Length = 310 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Haemophilus influenzae [TaxId: 727]
Score = 266 bits (679), Expect = 1e-88
Identities = 161/312 (51%), Positives = 210/312 (67%), Gaps = 11/312 (3%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
I D + IG TPLV L + K+E P SVK RIG +M+ AE+ G +
Sbjct: 2 IYADNSYSIGNTPLVRLKHFGHNG--NVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTLT 59
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
G +++ TSGNTGI LA++AAA+GY++ +TMP +MSLER+ +L G LVLT+ A+G
Sbjct: 60 KG-KEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKG 118
Query: 128 MKGAVQKAEEIRDKTPNSYV-LQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTG 186
MKGA+ KAEEI P+ YV L+QFENPANP+IH ETTGPEIWK T GK+D +V+G+GTG
Sbjct: 119 MKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGTG 178
Query: 187 GTVTGAGKYLKE-HNPEIKLYGVEPVESAVLSGGKPG------PHKIQGIGAGFIPGVLD 239
G++TG + +K +I VEPVES V+S G PHKIQGIGAGFIP LD
Sbjct: 179 GSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEEVKPGPHKIQGIGAGFIPKNLD 238
Query: 240 VNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFP 299
++++D + S+ A+ TA+ L +EG+L GISSGAA AAA ++AK PE A KLIVV+ P
Sbjct: 239 LSIIDRVETVDSDTALATARRLMAEEGILAGISSGAAVAAADRLAKLPEFADKLIVVILP 298
Query: 300 SFGERYLSSVLF 311
S ERYLS+ LF
Sbjct: 299 SASERYLSTALF 310
|
| >d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]} Length = 302 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Thermus thermophilus [TaxId: 274]
Score = 253 bits (647), Expect = 6e-84
Identities = 156/301 (51%), Positives = 212/301 (70%), Gaps = 3/301 (0%)
Query: 12 VTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPG-E 70
V IGKTP+V L ++V+ +A + KLE + P S+KDR + MI DAEE+G++RPG
Sbjct: 3 VEGAIGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSG 62
Query: 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKG 130
V++EPTSGNTGIGLA +AA++GYRLI+TMPA MS ER+ VL AFGAELVLTDP R M
Sbjct: 63 QVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLA 122
Query: 131 AVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVT 190
A ++A ++++ +++ QF+NPAN + HYETTGPE+++ G+IDA V G GTGGT+T
Sbjct: 123 AREEALRLKEE-LGAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTIT 181
Query: 191 GAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQIS 250
G G+YLKE P +K+ VEP S VLSGGK G H QG+G GFIP LD++LLD +Q+
Sbjct: 182 GVGRYLKERIPHVKVIAVEPARSNVLSGGKMGQHGFQGMGPGFIPENLDLSLLDGVIQVW 241
Query: 251 SEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVL 310
E+A A+ LA +EGL +G+SSG AA+Q+A+ GK + + P G +YLS+ L
Sbjct: 242 EEDAFPLARRLAREEGLFLGMSSGGIVWAALQVARE-LGPGKRVACISPDGGWKYLSTPL 300
Query: 311 F 311
+
Sbjct: 301 Y 301
|
| >d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 355 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Cystathionine beta-synthase species: Human (Homo sapiens) [TaxId: 9606]
Score = 250 bits (638), Expect = 9e-82
Identities = 126/315 (40%), Positives = 182/315 (57%), Gaps = 12/315 (3%)
Query: 8 IAKDVTELIGKTPLVYLNRIVD--GCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGL 65
I D+ + IG TP+V +N+I G + AK E SVKDRI MI DAE G
Sbjct: 34 ILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGT 93
Query: 66 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 125
++P +IEPTSGNTGIGLA AA +GYR II MP MS E+ VL A GAE+V T
Sbjct: 94 LKP-GDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTN 152
Query: 126 RGM---KGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSG 182
+ V A ++++ PNS++L Q+ N +NP HY+TT EI + GK+D LV+
Sbjct: 153 ARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVAS 212
Query: 183 IGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGK-----PGPHKIQGIGAGFIPGV 237
+GTGGT+TG + LKE P ++ GV+P S + + ++++GIG FIP V
Sbjct: 213 VGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTYEVEGIGYDFIPTV 272
Query: 238 LDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVV 297
LD ++D+ + + EEA A++L +EGLL G S+G+ A A++ A+ + G+ VV+
Sbjct: 273 LDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKAAQELQ-EGQRCVVI 331
Query: 298 FPSFGERYLSSVLFE 312
P Y++ L +
Sbjct: 332 LPDSVRNYMTKFLSD 346
|
| >d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]} Length = 302 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Salmonella typhimurium [TaxId: 90371]
Score = 246 bits (627), Expect = 7e-81
Identities = 163/306 (53%), Positives = 215/306 (70%), Gaps = 13/306 (4%)
Query: 6 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGL 65
S I +D + IG TPLV LNRI + RI AK+E P SVK RIG +MI DAE++G+
Sbjct: 1 SKIYEDNSLTIGHTPLVRLNRIGN---GRILAKVESRNPSFSVKCRIGANMIWDAEKRGV 57
Query: 66 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 125
++PG L+EPT+GNTGI LA++AAA+GY+L +TMP +MS+ERR +L A GA LVLT+ A
Sbjct: 58 LKPGV-ELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGA 116
Query: 126 RGMKGAVQKAEEIRDKT-PNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIG 184
+GMKGA+QKAEEI +LQQF NPANP+IH +TTGPEIW+ T G++D +SG+G
Sbjct: 117 KGMKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVG 176
Query: 185 TGGTVTGAGKY--LKEHNPEIKLYGVEPVESAVLSGGK------PGPHKIQGIGAGFIPG 236
TGGT+TG +Y + ++ VEP +S V++ PGPHKIQGIGAGFIPG
Sbjct: 177 TGGTLTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGEEIKPGPHKIQGIGAGFIPG 236
Query: 237 VLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVV 296
LD+ L+D+ V I++EEAI TA+ L +EG+L GISSGAA AAA+++ + K IVV
Sbjct: 237 NLDLKLIDKVVGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQEDESFTNKNIVV 296
Query: 297 VFPSFG 302
+ PS G
Sbjct: 297 ILPSSG 302
|
| >d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Escherichia coli, isoform B (CysM) [TaxId: 562]
Score = 221 bits (564), Expect = 2e-71
Identities = 123/300 (41%), Positives = 183/300 (61%), Gaps = 11/300 (3%)
Query: 12 VTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGES 71
+ + IG TPLV L R+ + + KLE P SVKDR SMI +AE++G I+PG+
Sbjct: 3 LEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDV 62
Query: 72 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGA 131
+ IE TSGNTGI LA +AA KGYR+ + MP +MS ERR + A+GAEL+L +GM+GA
Sbjct: 63 L-IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGA 121
Query: 132 VQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTG 191
+ +L QF NP NP HY TTGPEIW+ TGG+I VS +GT GT+TG
Sbjct: 122 -RDLALEMANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITG 180
Query: 192 AGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISS 251
++++E + + + G++P E + + G + P ++PG+ + +L+DE + I
Sbjct: 181 VSRFMREQSKPVTIVGLQPEEGSSIPGIRRWPT-------EYLPGIFNASLVDEVLDIHQ 233
Query: 252 EEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLF 311
+A T + LA++EG+ G+SSG A A A+++AK N ++V + G+RYLS+ +F
Sbjct: 234 RDAENTMRELAVREGIFCGVSSGGAVAGALRVAK--ANPDAVVVAIICDRGDRYLSTGVF 291
|
| >d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Archaeon Aeropyrum pernix [TaxId: 56636]
Score = 208 bits (531), Expect = 2e-65
Identities = 81/304 (26%), Positives = 136/304 (44%), Gaps = 19/304 (6%)
Query: 11 DVTELIGKTPLVYLNRIV-DGCVARIAAKLEMMEPCS-SVKDRIGYSMIADAEEKGLIRP 68
D E TPLV + +G R+ KLE P S SVKDR +I+ + +
Sbjct: 88 DFFERGKPTPLVRSRLQLPNGV--RVWLKLEWYNPFSLSVKDRPAVEIISRLSRR--VEK 143
Query: 69 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGM 128
G S++ + TS N G+ L+ +A GYR + +P + +++ GA++++ A
Sbjct: 144 G-SLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAPST 202
Query: 129 KGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWK---GTGGKIDALVSGIGT 185
+ + K + QF N AN + H T EI+ G + + +GT
Sbjct: 203 VHLLPR-VMKDSKNEGFVHVNQFYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGT 261
Query: 186 GGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDE 245
G ++ A YL+ +P I+ V+P + + G + + +LD++
Sbjct: 262 SGHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPGIRRVETGM------LWINMLDIS--YT 313
Query: 246 TVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERY 305
+++ EEA+E +A +GL++G S GAA A + A + VVV P G +Y
Sbjct: 314 LAEVTLEEAMEAVVEVARSDGLVIGPSGGAAVKALAKKAAEGDLEPGDYVVVVPDTGFKY 373
Query: 306 LSSV 309
LS V
Sbjct: 374 LSLV 377
|
| >d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]} Length = 331 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine deaminase species: Escherichia coli [TaxId: 562]
Score = 165 bits (417), Expect = 4e-49
Identities = 68/320 (21%), Positives = 116/320 (36%), Gaps = 26/320 (8%)
Query: 5 KSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKG 64
++V+ V E TPL + ++ I K E +P S K R Y+M+A E+
Sbjct: 14 RAVLRAPVYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQ 73
Query: 65 LIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 124
+I ++GN G+AF +A G + +I MP + + + + FG E++L
Sbjct: 74 KAHG----VITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLHGA 129
Query: 125 ARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIG 184
A + + F++P I + T +D + +G
Sbjct: 130 NFDEAKAKAIELSQQ---QGFTWVPPFDHP--MVIAGQGTLALELLQQDAHLDRVFVPVG 184
Query: 185 TGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQ---------GIGAGFIP 235
GG G +K+ P+IK+ VE +SA L H + G+ I
Sbjct: 185 GGGLAAGVAVLIKQLMPQIKVIAVEAEDSACLKAALDAGHPVDLPRVGLFAEGVAVKRIG 244
Query: 236 GV---LDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGK 292
L LD+ + + S+ K L + S A A + G+
Sbjct: 245 DETFRLCQEYLDDIITVDSDAICAAMKDLFEDVRAVAEPSGALALAGMKKYIALHNIRGE 304
Query: 293 LIVVVFP-----SFGERYLS 307
+ + G RY+S
Sbjct: 305 RLAHILSGANVNFHGLRYVS 324
|
| >d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 141 bits (355), Expect = 3e-40
Identities = 56/301 (18%), Positives = 122/301 (40%), Gaps = 23/301 (7%)
Query: 9 AKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRP 68
++ + + KTP++ + + VA + K E + + K R + ++
Sbjct: 12 SERIKKFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLN----EAQ 67
Query: 69 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGM 128
++ ++ +SGN +A A G I MP + +G ++++ D +
Sbjct: 68 RKAGVLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDRYKDD 127
Query: 129 KGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGT 188
+ + A+EI ++ + + +++P + T E+++ G +DAL +G GG
Sbjct: 128 R--EKMAKEISEREGLTII-PPYDHP-HVLAGQGTAAKELFE-EVGPLDALFVCLGGGGL 182
Query: 189 VTGAGKYLKEHNPEIKLYGVEPVESAVLS------------GGKPGPHKIQGIGAGFIPG 236
++G+ + P ++YGVEP K Q G
Sbjct: 183 LSGSALAARHFAPNCEVYGVEPEAGNDGQQSFRKGSIVHIDTPKTIADGAQTQHLGNYTF 242
Query: 237 VLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVV 296
+ +D+ + +S EE I+ K A + ++V + + AAA + ++ + K I +
Sbjct: 243 SIIKEKVDDILTVSDEELIDCLKFYAARMKIVVEPTGCLSFAAARAMKEKLK--NKRIGI 300
Query: 297 V 297
+
Sbjct: 301 I 301
|
| >d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]} Length = 310 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine deaminase species: Thermus thermophilus [TaxId: 274]
Score = 137 bits (344), Expect = 1e-38
Identities = 54/304 (17%), Positives = 111/304 (36%), Gaps = 28/304 (9%)
Query: 9 AKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRP 68
+ + +TPL+ + R+ K E ++ S K R S E
Sbjct: 10 FRRIAPYTHRTPLLTSRLLDGLLGKRLLLKAEHLQKTGSFKARGALSKALALENP----- 64
Query: 69 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGM 128
L+ +SGN G+A+ A G + ++ MP S ++ A+GAE+V
Sbjct: 65 --KGLLAVSSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDRGVTAKN 122
Query: 129 KGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIW--KGTGGKIDALVSGIGTG 186
+ V +A + ++ F++P + G A+++ +G G
Sbjct: 123 REEVARA---LQEETGYALIHPFDDPLVIAGQGTAGLELLAQAGRMGVFPGAVLAPVGGG 179
Query: 187 GTVTGAGKYLKEHNPEIKLYGVEPVESA-------------VLSGGKPGPHKIQGIGAGF 233
G + G +K +P + GVEP + + + + ++ + G
Sbjct: 180 GLLAGLATAVKALSPTTLVLGVEPEAADDAKRSLEAGRILRLEAPPRTRADGVRTLSLGE 239
Query: 234 IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKL 293
+ +D + +S E +E +LL + +V + AA ++ R +
Sbjct: 240 RTFPILRERVDGILTVSEEALLEAERLLFTRTKQVVEPTGALPLAAVLEHGARL---PQT 296
Query: 294 IVVV 297
+ ++
Sbjct: 297 LALL 300
|
| >d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: 1-aminocyclopropane-1-carboxylate deaminase species: Pseudomonas sp., strain ACP [TaxId: 306]
Score = 137 bits (344), Expect = 2e-38
Identities = 54/315 (17%), Positives = 92/315 (29%), Gaps = 32/315 (10%)
Query: 12 VTELIGKTPLVYLNRIVD--GCVARIAAKLEMMEPCSSV---KDRIGYSMIADAEEKGLI 66
G TP+ L R+ G + AK E + K R +I +A +G
Sbjct: 9 YPLTFGPTPIQPLARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQGCD 68
Query: 67 RPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERR----------MVLLAFG 116
V I N +A +AA G + ++ ++ +L
Sbjct: 69 TL---VSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGAD 125
Query: 117 AELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIW-----KG 171
LV G + + + A E +P G
Sbjct: 126 VRLVPDGFDIGFRRSWEDALESVRAAGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAE 185
Query: 172 TGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGA 231
G K D +V TG T G ++ GV+ + + Q
Sbjct: 186 LGFKFDYVVVCSVTGSTQAGMVVGFAADGRADRVIGVDASAKPAQTREQITRIARQTAEK 245
Query: 232 GFIPG-------VLDVNLLDETVQISSEEAIETAKLLALKEGLLVG-ISSGAATAAAIQI 283
+ VLD + +E +E +L A EG+L + G + I++
Sbjct: 246 VGLERDIMRADVVLDERFAGPEYGLPNEGTLEAIRLCARTEGMLTDPVYEGKSMHGMIEM 305
Query: 284 AKRPE-NAGKLIVVV 297
+ E G ++
Sbjct: 306 VRNGEFPEGSRVLYA 320
|
| >d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 386 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Tryptophan synthase, beta-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 128 bits (322), Expect = 8e-35
Identities = 69/337 (20%), Positives = 120/337 (35%), Gaps = 50/337 (14%)
Query: 19 TPLVYLNRIVDGC-VARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPT 77
TPL Y R+ + A+I K E + + K A+ G R ++ E
Sbjct: 51 TPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTR----LIAETG 106
Query: 78 SGNTGIGLAFMAAAKGYRLIITMPA---SMSLERRMVLLAFGAELVLTDP-ARGMKGAVQ 133
+G G+ A A G ++ I M A + GA ++ + +R +K A+
Sbjct: 107 AGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAIN 166
Query: 134 KAEEIRDKTP------NSYVLQQFENPANPKIHYETTGPEI---WKGTGGKIDALVSGIG 184
+A T V+ P + G E G++ ++
Sbjct: 167 EALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACV 226
Query: 185 TGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSG--------GKPGP------------- 223
GG+ Y ++ ++KL GVE + SG G+ G
Sbjct: 227 GGGSNAMGIFYPFVNDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEE 286
Query: 224 ----------HKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISS 273
+ G G L E V ++ EEA++ L+ EG++ + S
Sbjct: 287 GQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELSRTEGIIPALES 346
Query: 274 GAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVL 310
A A A+++AK + ++I+V G++ L VL
Sbjct: 347 AHAVAYAMKLAKE-MSRDEIIIVNLSGRGDKDLDIVL 382
|
| >d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 325 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: 1-aminocyclopropane-1-carboxylate deaminase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 126 bits (316), Expect = 2e-34
Identities = 54/298 (18%), Positives = 104/298 (34%), Gaps = 18/298 (6%)
Query: 12 VTELIGKTPLVYLNRIVDGCVARIAAKLEMM--EPCSSVKDRIGYSMIADAEEKGLIRPG 69
V + +TP+ YL I A + K + + K R ++ DA KG
Sbjct: 15 VELIPWETPIQYLPNISREIGADVYIKRDDLTGLGIGGNKIRKLEYLLGDALSKGADVV- 73
Query: 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMK 129
+ + N A G I+ + L+ +L A+
Sbjct: 74 --ITVGAVHSNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDAKDSF 131
Query: 130 GAVQKAEEIRD----KTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGT 185
++ AEEI + + YV+ + Y EI + K D++V G+
Sbjct: 132 ELMKYAEEIAEELKREGRKPYVIPPGGASPIGTLGYVRAVGEIATQSEVKFDSIVVAAGS 191
Query: 186 GGTVTGAGKYLKEHNPEIKLYGVEPVESA-----VLSGGKPGPHKIQGIGAGFIPGVLDV 240
GGT+ G L N +I+ G+ L ++ G+ P
Sbjct: 192 GGTLAGLSLGLSILNEDIRPVGIAVGRFGEVMTSKLDNLIKEAAELLGVKVEVRP--ELY 249
Query: 241 NLLDETVQISSEEAIETAKLLALKEGLLVG-ISSGAATAAAIQIAKRPENAGKLIVVV 297
+ + E + + + +EG+++ + +G A + +A++ E G+ I+ +
Sbjct: 250 DYSFGEYGKITGEVAQIIRKVGTREGIILDPVYTGKAFYGLVDLARKGE-LGEKILFI 306
|
| >d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: 1-aminocyclopropane-1-carboxylate deaminase species: Yeast (Hansenula saturnus) [TaxId: 4906]
Score = 122 bits (307), Expect = 5e-33
Identities = 48/316 (15%), Positives = 89/316 (28%), Gaps = 33/316 (10%)
Query: 12 VTELIGKTPLVYLNRIVD--GCVARIAAKLEMMEPCSSV---KDRIGYSMIADAEEKGLI 66
G +P+ LNR+ G + AK E + K R ++ D E
Sbjct: 9 YPLTFGPSPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDYT 68
Query: 67 RPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPAR 126
V I N +A +AA G + ++ + + + +
Sbjct: 69 HL---VSIGGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIM 125
Query: 127 GMKG---------------AVQKAEEIRDKTPNSYVLQQFENPANPKIHY---ETTGPEI 168
G A E + + +
Sbjct: 126 GADVRVIEDGFDIGMRKSFANALQELEDAGHKPYPIPAGCSEHKYGGLGFVGFADEVINQ 185
Query: 169 WKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESA-----VLSGGKPGP 223
G K D +V TG T G + ++ + + ++ ++
Sbjct: 186 EVELGIKFDKIVVCCVTGSTTAGILAGMAQYGRQDDVIAIDASFTSEKTKEQTLRIANNT 245
Query: 224 HKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVG-ISSGAATAAAIQ 282
K+ G+ F LD + +E IE + A +EG+L + G + I
Sbjct: 246 AKLIGVEHEFKDFTLDTRFAYPCYGVPNEGTIEAIRTCAEQEGVLTDPVYEGKSMQGLIA 305
Query: 283 IAKRPE-NAGKLIVVV 297
+ K G ++ V
Sbjct: 306 LIKEDYFKPGANVLYV 321
|
| >d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 477 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine synthase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 115 bits (289), Expect = 1e-29
Identities = 48/342 (14%), Positives = 102/342 (29%), Gaps = 34/342 (9%)
Query: 12 VTELIGKTPLVYLNRIVD--GCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPG 69
V+ G + L + R + + K + S KD +++ ++
Sbjct: 115 VSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRP 174
Query: 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMK 129
+ ++G+T L+ A+ G I+ +PA+ ++ +
Sbjct: 175 VVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKI-SMAQLVQPIANGAFVLSIDTDFD 233
Query: 130 GAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTV 189
G ++ EI + P L N + + + D ++ G G +
Sbjct: 234 GCMKLIREITAELP--IYLANSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNI 291
Query: 190 TGAGKYLKEH------NPEIKLYGVEPVES-----AVLSGGKPGPHKIQGIGAGFIPGVL 238
K K + ++ + + SG K +
Sbjct: 292 YAFYKGFKMCQELGLVDRIPRMVCAQAANANPLYLHYKSGWKDFKPMTASTTFASAIQIG 351
Query: 239 DVNLLDET----------VQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE 288
D +D V+ ++EE + A A G+ + +G A A ++ +
Sbjct: 352 DPVSIDRAVYALKKCNGIVEEATEEELMDAMAQADSTGMFICPHTGVALTALFKLRNQGV 411
Query: 289 NAGKLIVVV--------FPSFGERYLSSVLFESVKKEAESMV 322
A VV F Y S+ + + + + V
Sbjct: 412 IAPTDRTVVVSTAHGLKFTQSKIDYHSNAIPDMACRFSNPPV 453
|
| >d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]} Length = 390 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Tryptophan synthase, beta-subunit species: Salmonella typhimurium [TaxId: 90371]
Score = 111 bits (279), Expect = 1e-28
Identities = 61/325 (18%), Positives = 98/325 (30%), Gaps = 52/325 (16%)
Query: 19 TPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTS 78
T L I G + K E + + K A+ G E +
Sbjct: 56 TALTKCQNITAGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEII----AETGA 111
Query: 79 GNTGIGLAFMAAAKGYRLIITMPASM---SLERRMVLLAFGAELVLTDPARGMKGAVQKA 135
G G+ A +A G + I M A + GAE++ G
Sbjct: 112 GQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHS--GSATLKDAC 169
Query: 136 -EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTG-----------GKIDALVSGI 183
E +RD + + A Y T E + G G++ V
Sbjct: 170 NEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIAC 229
Query: 184 GTGGTVTGAGKYLKEHNPEIKLYGVEP--------VESAVLSGGKPG------------- 222
GG+ ++ + L GVEP A L G+ G
Sbjct: 230 VGGGSNAIGMFADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTA 289
Query: 223 ----------PHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGIS 272
+ G L+ + V I+ +EA+E K L EG++ +
Sbjct: 290 DGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALE 349
Query: 273 SGAATAAAIQIAKRPENAGKLIVVV 297
S A A A+++ + +L+VV
Sbjct: 350 SSHALAHALKMMREQPEKEQLLVVN 374
|
| >d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]} Length = 351 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine synthase species: Thermus thermophilus [TaxId: 274]
Score = 109 bits (273), Expect = 3e-28
Identities = 53/315 (16%), Positives = 95/315 (30%), Gaps = 26/315 (8%)
Query: 12 VTELIGKTPLVYLNRIV--DGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPG 69
++ L G TPL+ L R+ AK E + P S KDR ++ A E G
Sbjct: 22 ISLLEGSTPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKAVEGGAQAV- 80
Query: 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMK 129
++GNT A AA G I+ +PA ++ ++
Sbjct: 81 ----ACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVEGNFDD 136
Query: 130 GAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTV 189
+ + +T E+ G +G G +
Sbjct: 137 ALRLTQKLTEAFPVA----LVNSVNPHRLEGQKTLAFEVVDELGDAPHYHALPVGNAGNI 192
Query: 190 TGAGKYLKE------HNPEIKLYGVEPVESAVLSGGKPGPHK--------IQGIGAGFIP 235
T K ++ G + +A L G+P I +
Sbjct: 193 TAHWMGYKAYHALGKAKRLPRMLGFQAAGAAPLVLGRPVERPETLATAIRIGNPASWQGA 252
Query: 236 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE-NAGKLI 294
++ EE + + LA +EG+ +S AA A ++ + +
Sbjct: 253 VRAKEESGGVIEAVTDEEILFAYRYLAREEGIFCEPASAAAMAGVFKLLREGRLEPESTV 312
Query: 295 VVVFPSFGERYLSSV 309
V+ G + ++
Sbjct: 313 VLTLTGHGLKDPATA 327
|
| >d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 319 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: L-serine dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Score = 102 bits (255), Expect = 8e-26
Identities = 47/302 (15%), Positives = 86/302 (28%), Gaps = 26/302 (8%)
Query: 15 LIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLI 74
L KTP+ + + K++ +P S K R ++G +
Sbjct: 4 LHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQGCAH-----FV 58
Query: 75 EPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQK 134
++GN G+ A+ A G I +P + L GA + +
Sbjct: 59 CSSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKVVGELLDEAF--EL 116
Query: 135 AEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGK 194
A+ + P + F++P + H +S G G
Sbjct: 117 AKALAKNNPGWVYIPPFDDPLIWEGHASIVKELKETLWEKPGAIALSVGGGGLLCGVVQG 176
Query: 195 YLKEHNPEIKLYG------------VEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNL 242
+ ++ + + L + G L
Sbjct: 177 LQECGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAKALGVKTVGSQALKLFQEH 236
Query: 243 LDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAI-------QIAKRPENAGKLIV 295
+ IS +EA+ + E +LV + GAA AA Q+ +V
Sbjct: 237 PIFSEVISDQEAVAAIEKFVDDEKILVEPACGAALAAVYSHVIQKLQLEGNLRTPLPSLV 296
Query: 296 VV 297
V+
Sbjct: 297 VI 298
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 325 | |||
| d1z7wa1 | 320 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 100.0 | |
| d1ve1a1 | 302 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 100.0 | |
| d1jbqa_ | 355 | Cystathionine beta-synthase {Human (Homo sapiens) | 100.0 | |
| d1o58a_ | 293 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 100.0 | |
| d2bhsa1 | 292 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 100.0 | |
| d1y7la1 | 310 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 100.0 | |
| d1wkva1 | 382 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 100.0 | |
| d1v71a1 | 318 | Hypothetical protein C320.14 (SPCC320.14, SPCC330. | 100.0 | |
| d1fcja_ | 302 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 100.0 | |
| d1p5ja_ | 319 | L-serine dehydratase {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1tdja1 | 331 | Threonine deaminase {Escherichia coli [TaxId: 562] | 100.0 | |
| d1ve5a1 | 310 | Threonine deaminase {Thermus thermophilus [TaxId: | 100.0 | |
| d1v7ca_ | 351 | Threonine synthase {Thermus thermophilus [TaxId: 2 | 100.0 | |
| d1e5xa_ | 477 | Threonine synthase {Mouse-ear cress (Arabidopsis t | 100.0 | |
| d1v8za1 | 386 | Tryptophan synthase, beta-subunit {Archaeon Pyroco | 100.0 | |
| d1qopb_ | 390 | Tryptophan synthase, beta-subunit {Salmonella typh | 100.0 | |
| d1j0aa_ | 325 | 1-aminocyclopropane-1-carboxylate deaminase {Archa | 100.0 | |
| d1tyza_ | 338 | 1-aminocyclopropane-1-carboxylate deaminase {Pseud | 100.0 | |
| d1f2da_ | 341 | 1-aminocyclopropane-1-carboxylate deaminase {Yeast | 100.0 | |
| d1vb3a1 | 428 | Threonine synthase {Escherichia coli [TaxId: 562]} | 99.97 | |
| d1kl7a_ | 511 | Threonine synthase {Baker's yeast (Saccharomyces c | 99.87 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 95.6 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 95.52 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 95.51 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 95.31 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 94.99 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 94.6 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 94.46 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 94.45 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 94.19 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 93.99 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 93.94 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 93.8 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 93.68 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 93.57 | |
| d1vp8a_ | 190 | Hypothetical protein AF0103 {Archaeoglobus fulgidu | 93.32 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 92.74 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 92.62 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 92.31 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 91.64 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 91.07 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 90.74 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 90.48 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 90.29 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 89.44 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 88.85 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 87.79 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 86.71 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 86.68 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 86.59 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 86.23 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 85.43 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 84.95 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 84.72 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 84.6 | |
| d1t57a_ | 186 | Hypothetical protein MTH1675 {Methanobacterium the | 84.11 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 84.09 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 82.93 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 82.24 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 82.03 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 81.79 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 81.72 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 81.67 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 81.62 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 81.43 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 80.99 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 80.65 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 80.52 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 80.46 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 80.33 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 80.08 |
| >d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=1.1e-71 Score=510.57 Aligned_cols=318 Identities=81% Similarity=1.278 Sum_probs=294.8
Q ss_pred chhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHH
Q 020528 7 VIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLA 86 (325)
Q Consensus 7 ~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA 86 (325)
++.+.|.+.+|+|||+++++|++.++++||+|+|++|||||||||++.+++.+++++|.++++...||++||||||.|+|
T Consensus 2 ~i~~~i~~~iG~TPLv~~~~l~~~~g~~i~~K~E~~nptGSfKdRgA~~~i~~a~~~g~~~~~~~~vv~aSsGN~g~a~A 81 (320)
T d1z7wa1 2 RIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLA 81 (320)
T ss_dssp CCCSSGGGGSSCCCEEECCGGGTTCSSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHH
T ss_pred chhhhhhhhcCCCCeEECCCcccccCCEEEEEeCCCCCccCcHHHHHHHHHHHHHHcCCCCCCCceEEeeCCchHHHHHH
Confidence 45677899999999999999999889999999999999999999999999999999999888778999999999999999
Q ss_pred HHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHH
Q 020528 87 FMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGP 166 (325)
Q Consensus 87 ~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~ 166 (325)
++|+.+|++|+||+|.+++..|+++++.+||+|+.++...+.......+.+...+.++++++++|+|+.|++.||+|++.
T Consensus 82 ~~a~~~g~~~~iv~p~~~~~~k~~~i~~~Ga~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~g~~t~~~ 161 (320)
T d1z7wa1 82 FTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGP 161 (320)
T ss_dssp HHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHCTTEEECCTTTCTHHHHHHHHTHHH
T ss_pred HHHHhhccceEEeehhhhhhhhhhhhhccCcceEEeeccccccccchhHHHHHHhCCCceecccccccchHHHhhhhHHH
Confidence 99999999999999999999999999999999999986433444455555555666689999999999998999999999
Q ss_pred HHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCCcccccCCCCCCccccccccCCeE
Q 020528 167 EIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDET 246 (325)
Q Consensus 167 Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~ 246 (325)
||++|+.+.||+||+|+|+||+++|++++|+..+|.+++++|||.+++.+..+.+.++.+++++.+.+|+.+..+.+|++
T Consensus 162 EI~~q~~~~~D~vv~~vGgGg~~~Gi~~~~k~~~~~~~~igve~~~s~~~~~~~~~~~~~~gig~~~~~~~~~~~~id~~ 241 (320)
T d1z7wa1 162 EIWKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDEV 241 (320)
T ss_dssp HHHHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEGGGCGGGTCCCCCCSCTTSCCSSCCTTCCGGGCSEE
T ss_pred HHHHhccCCCCEEEeCCCCCcccchhhhhhhhhhcceeeecccccCCccccCCCCCCceeeeccCCcCcchhhhhhccee
Confidence 99999977899999999999999999999999999999999999999999888888888999999988999999999999
Q ss_pred EEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhHHHHHHhcCCCCC
Q 020528 247 VQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFESVKKEAESMVFE 324 (325)
Q Consensus 247 ~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~~~~~~~~~~~~~ 324 (325)
+.|+|+|+++++++|+++||+++||+||++++++++++++...++++||+|+||+|+||+|+++||+|++++++++.+
T Consensus 242 ~~V~d~e~~~a~~~l~~~eGi~ve~ssga~~aaa~k~a~~~~~~~~~VV~i~~d~G~kYlst~~~d~~~~e~~~~~~~ 319 (320)
T d1z7wa1 242 VQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENAGKLFVAIFPSFGERYLSTVLFDATRKEAEAMTFE 319 (320)
T ss_dssp EEECHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHTSGGGTTCEEEEEECBBGGGGTTSGGGHHHHHHHHTCCCC
T ss_pred eccCHHHHHHHHHHHHHHCCEEEehHHHHHHHHHHHHHhhccCCCCEEEEEECCCchhhcccccCHHHHHHHhcCCCC
Confidence 999999999999999999999999999999999999887655678999999999999999999999999999999876
|
| >d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.1e-65 Score=465.63 Aligned_cols=299 Identities=52% Similarity=0.849 Sum_probs=275.6
Q ss_pred HHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCC-eEEEecCCChhHHHHHHHH
Q 020528 11 DVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGE-SVLIEPTSGNTGIGLAFMA 89 (325)
Q Consensus 11 ~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~-~~vv~~ssGN~g~alA~~a 89 (325)
+|...+|+|||+++++|++..|++||+|+|++|||||||+|++.+++.++.++|.+++++ ++|+++|+||||.|+|++|
T Consensus 2 ri~~~ig~TPLi~~~~l~~~~g~~i~~K~E~~~ptGSfK~Rga~~~i~~a~~~g~~~~~~~~~vv~~SsGN~g~a~A~~a 81 (302)
T d1ve1a1 2 RVEGAIGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSGQVIVEPTSGNTGIGLAMIA 81 (302)
T ss_dssp CGGGGCCCCCEEECCSSSCTTSCEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTSCCTTSCCEEEESCCSHHHHHHHHHH
T ss_pred cccCccCCCCeEECcccchhhCCEEEEEeCCCCcccCcHHHHHHHHHHHHHHhCCCCCCCCcEEEEecCCcchhhhhhhh
Confidence 577889999999999999888999999999999999999999999999999999887763 6899999999999999999
Q ss_pred HHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHHH
Q 020528 90 AAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIW 169 (325)
Q Consensus 90 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~ 169 (325)
+.+|++|++|+|+.++..|++.++.+|++++.+....+..+....+.+..++. ++++++||+|+.+++.|++|++.||+
T Consensus 82 ~~~g~~~~iv~p~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~t~~~EI~ 160 (302)
T d1ve1a1 82 ASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLAAREEALRLKEEL-GAFMPDQFKNPANVRAHYETTGPELY 160 (302)
T ss_dssp HHHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHHH-TCBCCCTTTCHHHHHHHHHTHHHHHH
T ss_pred hccCcceeEeeecccchheeehhhhhhhcchhcccccchHHHHHHhhhhhhcc-CccccccCccchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999997655566666666666665 78999999999988889999999999
Q ss_pred hhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCCcccccCCCCCCccccccccCCeEEEe
Q 020528 170 KGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQI 249 (325)
Q Consensus 170 ~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~v 249 (325)
+|++++||+||+|+|+||+++|++++|+...|+++||+|||++++.+..+....+.+++++.+..|+.+..+..++.+.|
T Consensus 161 ~q~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~iigve~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~V 240 (302)
T d1ve1a1 161 EALEGRIDAFVYGSGTGGTITGVGRYLKERIPHVKVIAVEPARSNVLSGGKMGQHGFQGMGPGFIPENLDLSLLDGVIQV 240 (302)
T ss_dssp HHTTTCCSEEEEECSSSHHHHHHHHHHHTTCTTCEEEEEEEGGGCTTTTCCCCCCSCTTSCCSSCCTTCCGGGCSEEEEE
T ss_pred HHcCCCCCeEEEeecCcHHHHHHHHHHHhcCCCCEEEEEEecccceeeeccccCcccCccCCCcCCchhhhhcceeeeec
Confidence 99987899999999999999999999999999999999999999998877777777889988888888888999999999
Q ss_pred CHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhh
Q 020528 250 SSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLF 311 (325)
Q Consensus 250 ~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~ 311 (325)
+|+|+++++++|++++|+++||+||++++++++++++. .++++||+|+||+|+||+|+.+|
T Consensus 241 ~d~ea~~a~~~l~~~eGi~v~~ssgaa~aaal~~~~~~-~~~~~Vv~i~~g~G~kY~st~~f 301 (302)
T d1ve1a1 241 WEEDAFPLARRLAREEGLFLGMSSGGIVWAALQVAREL-GPGKRVACISPDGGWKYLSTPLY 301 (302)
T ss_dssp CHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHHH-CTTCEEEEEECBBSGGGTTSTTT
T ss_pred CHHHHHHHHHHHHHHcCCEEeccHHHHHHHHHHHhHHh-CccCeEEEEECCCCchhcChhhc
Confidence 99999999999999999999999999999999987653 47899999999999999999766
|
| >d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Cystathionine beta-synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4e-65 Score=473.04 Aligned_cols=311 Identities=41% Similarity=0.628 Sum_probs=272.9
Q ss_pred cchhHHHhhhhCCCCceecccccCCCC--ceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHH
Q 020528 6 SVIAKDVTELIGKTPLVYLNRIVDGCV--ARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGI 83 (325)
Q Consensus 6 ~~~~~~i~~~~~~TPL~~~~~l~~~~~--~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~ 83 (325)
.+++..|.+.||+|||+++++|++.+| ++||+|+|++|||||||||++.+++.+|.++|.++++ ++||++|+||||.
T Consensus 32 ~~~~~~i~~~IG~TPLv~l~~ls~~~G~~~~i~~K~E~~nptGSfKdRga~~~i~~a~~~g~~~~~-~~vv~aSsGN~g~ 110 (355)
T d1jbqa_ 32 PKILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKPG-DTIIEPTSGNTGI 110 (355)
T ss_dssp CSEESSGGGGSSCCCEEECCSHHHHTTCCSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHHTCSCTT-CEEEEECSSHHHH
T ss_pred ccccccHHHhcCCCCcEECcchhHHhCCCCEEEEEECCCCCccCHHHHHHHHHHHHHHHcCCcccC-ceEEEecccchhh
Confidence 456778889999999999999997655 6899999999999999999999999999999987765 6799999999999
Q ss_pred HHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChh---HHHHHHHHHHHhCCCeEEeCCCCCCcchHhH
Q 020528 84 GLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMK---GAVQKAEEIRDKTPNSYVLQQFENPANPKIH 160 (325)
Q Consensus 84 alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g 160 (325)
|+|++|+++|++|+||||.++++.|+++|+.+||+|+.++...... +......+...+.+..++.+++.++.+.++|
T Consensus 111 a~A~~a~~~Gi~~~iv~p~~~~~~k~~~i~~~GA~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag 190 (355)
T d1jbqa_ 111 GLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAH 190 (355)
T ss_dssp HHHHHHHHHTCEEEEEECSCCCHHHHHHHHHTTCEEEECCC-------CCHHHHHHHHHHHSTTEECCCTTTCTHHHHHH
T ss_pred HHHHHHHhccCCeEEEeeccchHHHHHHHHhcCCeEEEecccccchhhhhhhhHHHHHHHhccccccccccCcccchhhh
Confidence 9999999999999999999999999999999999999997643322 3444445555565578888999998888899
Q ss_pred HhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccC-----CCCCCcccccCCCCCCc
Q 020528 161 YETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSG-----GKPGPHKIQGIGAGFIP 235 (325)
Q Consensus 161 ~~t~~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~-----~~~~~~~~~gl~~~~~~ 235 (325)
|+|++.||++|+.++||+||+|+|+||+++|++.+|++.++.+||++|+|++++.+.. .......+++++.+..+
T Consensus 191 ~~t~~~EI~~ql~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~kii~vep~gs~~~~~~~~~~~~~~~~~i~gi~~~~~~ 270 (355)
T d1jbqa_ 191 YDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTYEVEGIGYDFIP 270 (355)
T ss_dssp HHTHHHHHHHHHTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEETTCSCSSSGGGGCCSCCCCSCCSCCCSSCC
T ss_pred cccchhhhhhhcCCCCCeeEecccCCchHHHHHHHHhhcCCcceEEeecccCCcccccccccccccccccccccccccch
Confidence 9999999999998889999999999999999999999999999999999999976532 22334567788887777
Q ss_pred cccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhHHHH
Q 020528 236 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFESVK 315 (325)
Q Consensus 236 ~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~~~~ 315 (325)
.......+++.+.|+|+|+++++++|++++|+++||++|++++++++++++. .++++||+|+||+|.||+|++++|+|+
T Consensus 271 ~~~~~~~~~~~~~v~D~ea~~~~~~L~~~eGi~vepSsaa~laa~l~~~~~~-~~g~~VVvvlcd~G~kY~s~~~~d~~~ 349 (355)
T d1jbqa_ 271 TVLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKAAQEL-QEGQRCVVILPDSVRNYMTKFLSDRWM 349 (355)
T ss_dssp TTCCGGGCCEEEEECHHHHHHHHHHHHHHSCCCBCHHHHHHHHHHHHHGGGC-CTTCEEEEEECBBGGGGTTTTTCHHHH
T ss_pred hhhhhhheeeeccCCHHHHHHHHHHHHHHhCcEEeHHHHHHHHHHHHHHHhc-CCcCEEEEEECCCCccccccccCHHHH
Confidence 7788889999999999999999999999999999999999999999988764 478999999999999999998888887
Q ss_pred HHh
Q 020528 316 KEA 318 (325)
Q Consensus 316 ~~~ 318 (325)
+..
T Consensus 350 ~~~ 352 (355)
T d1jbqa_ 350 LQK 352 (355)
T ss_dssp HHT
T ss_pred HHC
Confidence 653
|
| >d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.2e-65 Score=465.00 Aligned_cols=291 Identities=53% Similarity=0.783 Sum_probs=267.7
Q ss_pred hHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHH
Q 020528 9 AKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFM 88 (325)
Q Consensus 9 ~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~ 88 (325)
+++|..++|+|||+++++|+ .+||+|+|++|||||||||++.+++.++.++|..+ ..|+++|+||||.|+|++
T Consensus 1 ~~~i~~~ig~TPL~~~~~l~----~~i~~K~E~~nptGSfK~Rga~~~i~~a~~~g~~~---~~vv~~SsGN~g~a~A~~ 73 (293)
T d1o58a_ 1 HHMMERLIGSTPIVRLDSID----SRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLK---NGIVEPTSGNMGIAIAMI 73 (293)
T ss_dssp CCHHHHHSCCCCEEECTTTC----TTEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTCCT---TCEEEECSSHHHHHHHHH
T ss_pred CchhhhhcCCCCcEECCCCC----CEEEEEECCCCCccChHHHHHHHHHHHHHHcCCCC---cceEEecCcchhhHHHHh
Confidence 35788999999999998764 57999999999999999999999999999999755 349999999999999999
Q ss_pred HHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHH
Q 020528 89 AAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEI 168 (325)
Q Consensus 89 a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei 168 (325)
|+.+|++|+||+|++++..|+++++.+||+|+.++.+.+......++.+++++. +++|+++|+|+.+++.|+.+++.||
T Consensus 74 a~~~g~~~~i~~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~t~~~Ei 152 (293)
T d1o58a_ 74 GAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVEKALEISRET-GAHMLNQFENPYNVYSHQFTTGPEI 152 (293)
T ss_dssp HHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHH-CCBCCCTTTCHHHHHHHHHTHHHHH
T ss_pred hhhccceeEeeccccccHHHeeccccCCcEEEEecCcchhhHHHHHHHHHHhcc-CCEEeeeccccceeeeccccHHHhh
Confidence 999999999999999999999999999999999987555556777777887776 7899999999988888999999999
Q ss_pred HhhhCCCCCEEEEecCCchhHHHHHHHHHhhCC-CcEEEEEecCCCccccCCCCCCcccccCCCCCCccccccccCCeEE
Q 020528 169 WKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNP-EIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETV 247 (325)
Q Consensus 169 ~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~-~~~vigV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~ 247 (325)
++|+.++||+||+|+|+||+++|++++||+..+ .+|+|+|||++++++..+.+..+.+++++.+..|+.+++..+|+++
T Consensus 153 ~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~~ii~vep~~~~~l~~~~~~~~~i~~i~~~~~~~~~~~~~~d~~v 232 (293)
T d1o58a_ 153 LKQMDYQIDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIGAGFVPKILDRSVIDEVI 232 (293)
T ss_dssp HHHTTTCCSEEEEECSSSHHHHHHHHHHHHHHGGGSEEEEEEETTSCTTTTCCCCCCCCTTSCCSSCCTTCCGGGCCEEE
T ss_pred hhhcCCCCCEEEEecCcchhHHHHHHHHHHHCCCCCeEEEEecCCCccccCCCcCCcccccCCCCccchhhhhhhCcEEE
Confidence 999988899999999999999999999999765 5999999999999998888888889999999889999999999999
Q ss_pred EeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcch
Q 020528 248 QISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSS 308 (325)
Q Consensus 248 ~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~ 308 (325)
.|+|+|+++++++|++++|+++||++|++++++++++++. .++++||+|+||+|+||+|+
T Consensus 233 ~v~d~e~~~a~~~l~~~eGi~~epssaa~~aa~~~~a~~~-~~~~~Vv~i~~d~g~kYls~ 292 (293)
T d1o58a_ 233 TVEDEEAYEMARYLAKKEGLLVGISSGANVAAALKVAQKL-GPDARVVTVAPDHAERYLSI 292 (293)
T ss_dssp EECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHTS-CTTCCEEEEECBBGGGCTTT
T ss_pred EECHHHHHHHHHHHHHHcCCEEeHHHHHHHHHHHHHHHHc-CCcCEEEEEECCCCcccccC
Confidence 9999999999999999999999999999999999988764 47889999999999999996
|
| >d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Escherichia coli, isoform B (CysM) [TaxId: 562]
Probab=100.00 E-value=1.2e-64 Score=458.34 Aligned_cols=290 Identities=43% Similarity=0.753 Sum_probs=261.1
Q ss_pred HHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHH
Q 020528 11 DVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAA 90 (325)
Q Consensus 11 ~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~ 90 (325)
.|.+.||+|||+++++|++.+|++||+|+|++|||||||||++.+++.++.++|.+.++ .+||++|+||||+|+|++|+
T Consensus 2 ~i~~~IG~TPL~~~~~l~~~~g~~iy~K~E~~~ptGSfK~Rga~~~i~~a~~~g~~~~~-~~vv~aSsGN~g~a~A~~a~ 80 (292)
T d2bhsa1 2 TLEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPG-DVLIEATSGNTGIALAMIAA 80 (292)
T ss_dssp CGGGGSSCCCEEECSSSSCCSSCEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTSCCTT-SEEEEECCSHHHHHHHHHHH
T ss_pred chhcccCCCceEECCccChhhCCEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhCCcCCC-ceeeeecccchhHHHHHHHH
Confidence 36778999999999999999999999999999999999999999999999999987765 67999999999999999999
Q ss_pred HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHHHh
Q 020528 91 AKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWK 170 (325)
Q Consensus 91 ~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~ 170 (325)
++|++|+||||+++++.|+++++.+||+|+.++.+.++.++..++.+..++. +.++.+||+|+.++++|+.++++||++
T Consensus 81 ~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~Ei~~ 159 (292)
T d2bhsa1 81 LKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLALEMANRG-EGKLLDQFNNPDNPYAHYTTTGPEIWQ 159 (292)
T ss_dssp HHTCEEEEEEESCCCHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHHT-SSEECCTTTCTHHHHHHHHTHHHHHHH
T ss_pred hcCcceEeeeccCchhhhhHHHHHhCCCcceeecccchHHHHHHHhhccccc-cccccCCCchhcchhhHHHHHHHHhHH
Confidence 9999999999999999999999999999999987655566666666666665 788899999999888999999999999
Q ss_pred hhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCCcccccCCCCCCccccccccCCeEEEeC
Q 020528 171 GTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQIS 250 (325)
Q Consensus 171 ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~v~ 250 (325)
|+++.||+||+|+|+||+++|+++++|+..++++|++|||++++++......+ ....++.+....+|+++.|+
T Consensus 160 q~~~~~d~vv~~~G~Gg~~~G~~~~~k~~~~~~~i~~Vep~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~v~ 232 (292)
T d2bhsa1 160 QTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEEGSSIPGIRRWP-------TEYLPGIFNASLVDEVLDIH 232 (292)
T ss_dssp HTTTCCCEEEEECSSSHHHHHHHHHHHTSSSCCEEEEEEECTTCCCTTCCCCC-------TTTCCTTCCGGGCSEEEEEC
T ss_pred hcCCCCCcccccCCCccchhhhhhhhhhccCcceEEEeccccccccccccccc-------cccccccccccccceEEEcC
Confidence 99878999999999999999999999999999999999999998775432211 22335556677889999999
Q ss_pred HHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhh
Q 020528 251 SEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLF 311 (325)
Q Consensus 251 d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~ 311 (325)
|+|+++++++|+++||+++||+||+++++++++.+.+ ++++||+|+||+|+||+|+.+|
T Consensus 233 d~ea~~a~~~L~~~eGi~vepSsgaalaa~~~~~~~~--~~~~VV~il~~~G~kYlst~~~ 291 (292)
T d2bhsa1 233 QRDAENTMRELAVREGIFCGVSSGGAVAGALRVAKAN--PDAVVVAIICDRGDRYLSTGVF 291 (292)
T ss_dssp HHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHTC--TTCEEEEEECBBSGGGGGGTCC
T ss_pred HHHHHHHHHHHHHHcCeEEeHHHHHHHHHHHHHHHHC--cCCeEEEEECCCCccccccccc
Confidence 9999999999999999999999999999999998764 7889999999999999999876
|
| >d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Haemophilus influenzae [TaxId: 727]
Probab=100.00 E-value=9.6e-63 Score=449.42 Aligned_cols=301 Identities=53% Similarity=0.826 Sum_probs=264.6
Q ss_pred hhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHH
Q 020528 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAF 87 (325)
Q Consensus 8 ~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 87 (325)
++++++..||+|||+++++|+. +.+||+|+|++|||||||||+|.+++.++.+.|.+.++ ++||++||||||.|+|+
T Consensus 2 ~y~~~~~~ig~TPLv~~~~l~~--~~~I~lK~E~~nptGSfK~RgA~~~i~~a~~~g~~~~~-~~vv~~SsGN~g~a~A~ 78 (310)
T d1y7la1 2 IYADNSYSIGNTPLVRLKHFGH--NGNVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTLTKG-KEIVDATSGNTGIALAY 78 (310)
T ss_dssp CCSSGGGGCCCCCEEECSSSSS--TTCEEEEETTSSGGGBTHHHHHHHHHHHHHHTTSSCTT-CEEEESCCSHHHHHHHH
T ss_pred ccchhhhhcCCCCeEECCCCCC--CCEEEEEECCCCCcCcCHHHHHHHHHHHHHHcCCCCCC-ceeeeecCCCchHHHHH
Confidence 4678899999999999998875 47899999999999999999999999999999988776 67999999999999999
Q ss_pred HHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHH-hCCCeEEeCCCCCCcchHhHHhchHH
Q 020528 88 MAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRD-KTPNSYVLQQFENPANPKIHYETTGP 166 (325)
Q Consensus 88 ~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~n~~~~~~g~~t~~~ 166 (325)
+|+++|++|+||+|.+++..|+++++.+||+|+.+++..+.++......+... ...+.+++++|+|+.+...|+.+++.
T Consensus 79 ~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 158 (310)
T d1y7la1 79 VAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKGMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGP 158 (310)
T ss_dssp HHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHCTTTEECCCTTTCTHHHHHHHHTHHH
T ss_pred HHHHhhccccccchhhhhhhhhhhHHHhCCceEeccCccccchhhHHHHHHHHhhcCccccCCCCcchhhHHHhhhhHHH
Confidence 99999999999999999999999999999999999964332333333333322 33467899999999887889999999
Q ss_pred HHHhhhCCCCCEEEEecCCchhHHHHHHHHHh-hCCCcEEEEEecCCCccccC------CCCCCcccccCCCCCCccccc
Q 020528 167 EIWKGTGGKIDALVSGIGTGGTVTGAGKYLKE-HNPEIKLYGVEPVESAVLSG------GKPGPHKIQGIGAGFIPGVLD 239 (325)
Q Consensus 167 Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~-~~~~~~vigV~~~~~~~~~~------~~~~~~~~~gl~~~~~~~~~~ 239 (325)
||++|+.+.||+||+|+|+||+++|+++++|. ..|.+++++|+|.+++.+.. ....++.+.+++.+..|..+.
T Consensus 159 Ei~~~~~~~~d~vv~~~G~Gg~~~G~~~~lk~~~~~~~~~i~ve~~~~~~~~~~~~~~~~~~~~~~~~gig~~~~~~~~~ 238 (310)
T d1y7la1 159 EIWKDTDGKVDVVVAGVGTGGSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEEVKPGPHKIQGIGAGFIPKNLD 238 (310)
T ss_dssp HHHHHTTTCEEEEEEECSSSHHHHHHHHHHHHTSCCCCEEEEEEETTSCHHHHHHHTCCCCCCCCSCTTSCCSSCCTTCC
T ss_pred HHHHhcCCCCCEEEecCcCCcchhHHHHHHHHhhcccceeccccccCchhhhhhhcCCccccCCceeeecccccccHHHh
Confidence 99999988899999999999999999999985 67999999999999976531 223456778888888888899
Q ss_pred cccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhh
Q 020528 240 VNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLF 311 (325)
Q Consensus 240 ~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~ 311 (325)
+...++++.|+|+|+++++++|++++|+++||++|+++++++++++..+.++++||+|+||+|+||+|+.+|
T Consensus 239 ~~~~~~~~~v~d~ea~~~~~~l~~~eGi~vepssaa~laaa~~~a~~~~~~~~~vV~vlcd~g~kY~~t~~~ 310 (310)
T d1y7la1 239 LSIIDRVETVDSDTALATARRLMAEEGILAGISSGAAVAAADRLAKLPEFADKLIVVILPSASERYLSTALF 310 (310)
T ss_dssp GGGCCEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHTSGGGTTCEEEEEECBBCSSCCCTTTC
T ss_pred hhhcceeccCCHHHHHHHHHHHHHHcCCEEeHHHHHHHHHHHHHHhhccCCcCEEEEEECCCcchhcCCCCC
Confidence 999999999999999999999999999999999999999999998776567899999999999999999765
|
| >d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=100.00 E-value=8.5e-60 Score=437.21 Aligned_cols=294 Identities=26% Similarity=0.349 Sum_probs=248.6
Q ss_pred cchhHHHhhhhC---CCCceecccccCCCCceEEEEeCCCCCCC-ChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChh
Q 020528 6 SVIAKDVTELIG---KTPLVYLNRIVDGCVARIAAKLEMMEPCS-SVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNT 81 (325)
Q Consensus 6 ~~~~~~i~~~~~---~TPL~~~~~l~~~~~~~l~~K~E~~nptG-S~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~ 81 (325)
.+++++..+.++ +|||+++ +++...|++||+|+|++|||| |||||++.+++.+|.++ ++++ .+||++|+|||
T Consensus 80 ~~~~~~~l~~~~~~~PTPLvrl-~l~~~~G~~IylKlE~~NPtGgSfKdR~A~~~i~~A~~~--~~~g-~~VVeaSSGN~ 155 (382)
T d1wkva1 80 EMVFPSPLDFFERGKPTPLVRS-RLQLPNGVRVWLKLEWYNPFSLSVKDRPAVEIISRLSRR--VEKG-SLVADATSSNF 155 (382)
T ss_dssp TCEESSHHHHHHHSCSCCEEEC-CCCCSTTEEEEEEEGGGSTTTSBTTHHHHHHHHHHHTTT--SCTT-CEEEEECCHHH
T ss_pred ceEeCCHHHHhcCCCCCCEEEC-CCCCCCCCEEEEEecCCCCCCCccHHHHHHHHHHHHHhc--cCCC-CEEEEeCCcHH
Confidence 355566666554 5999997 566667889999999999986 99999999999988643 4455 56999999999
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHH
Q 020528 82 GIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHY 161 (325)
Q Consensus 82 g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~ 161 (325)
|+|+|++|+.+|++|+||||.++++.|+++++.+||+|+.++...+..+...++.+.+++. ++++++||.|+.+++.||
T Consensus 156 GiAlA~~aa~lGik~~Iv~P~~~~~~K~~~ira~GAeVi~~~~~~~~~~~~~~a~~~a~~~-~~~~~~q~~N~~~~~~h~ 234 (382)
T d1wkva1 156 GVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAPSTVHLLPRVMKDSKNE-GFVHVNQFYNDANFEAHM 234 (382)
T ss_dssp HHHHHHHHHHTTCEEEEEEETTSCHHHHHHHHHTTCEEEEETTCSSSGGGHHHHHHHHHHH-CCEECCTTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEeeccccccccccccccCcceeecCcchhhHHHHHHHhhhcccc-Cccccccccccceeeehh
Confidence 9999999999999999999999999999999999999999987655566667777777766 789999999999989999
Q ss_pred hchHHHHHhhhC---CCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCCcccccCCCCCCcccc
Q 020528 162 ETTGPEIWKGTG---GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVL 238 (325)
Q Consensus 162 ~t~~~Ei~~ql~---~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~ 238 (325)
++++.||++|+. ..+|+||+|+|+||+++|+++++|+.+|++|+|+|||.+++.+.+. ..++.+..+..
T Consensus 235 ~ttg~EI~eQl~~~~~~~d~vv~~vGtGG~~~Gi~~~lk~~~p~vkiigVep~~~~~i~g~-------~~i~~g~~~~~- 306 (382)
T d1wkva1 235 RGTAREIFVQSRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPGI-------RRVETGMLWIN- 306 (382)
T ss_dssp HTHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHCTTCEEEEEEECTTCCCTTC-------CCGGGCCSHHH-
T ss_pred hcchHHHHHHhhcCCCceeEEEEecccccccccceeehhhhCCccceeEeccccccccccc-------cccccCccCcc-
Confidence 999999999983 3689999999999999999999999999999999999998766321 12222222211
Q ss_pred ccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhHH
Q 020528 239 DVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFES 313 (325)
Q Consensus 239 ~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~~ 313 (325)
..+..++++.|+|+|+++++++|+++||+++|||||+++++++++++++..+++++|+|+||+|+||+|+ +|+.
T Consensus 307 ~~d~~~~i~~Vsd~Eai~a~r~La~~EGI~vgpSSGaavaaa~k~a~~~~~~~~~vVvIlcD~G~rYlst-iyN~ 380 (382)
T d1wkva1 307 MLDISYTLAEVTLEEAMEAVVEVARSDGLVIGPSGGAAVKALAKKAAEGDLEPGDYVVVVPDTGFKYLSL-VQNA 380 (382)
T ss_dssp HSCCCCEEEEECHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHHTTCSCSEEEEEEECBBGGGCHHH-HHHH
T ss_pred ccccceEEEEECHHHHHHHHHHHHHHcCCEEcHHHHHHHHHHHHHHhhccCCCCCEEEEECCCCccchHh-hccC
Confidence 1245678999999999999999999999999999999999999998876656778999999999999999 4443
|
| >d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=100.00 E-value=5.2e-60 Score=432.86 Aligned_cols=298 Identities=19% Similarity=0.278 Sum_probs=257.0
Q ss_pred ccchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHH
Q 020528 5 KSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIG 84 (325)
Q Consensus 5 ~~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 84 (325)
+..++++|..++++|||+++++|++.+|.+||+|+|++|||||||||++.+++.++.+.+. ...|+++|+||||+|
T Consensus 8 i~~a~~ri~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGSfKdRga~~~~~~~~~~~~----~~~vv~~ssGN~g~a 83 (318)
T d1v71a1 8 VASASERIKKFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLNEAQR----KAGVLTFSSGNHAQA 83 (318)
T ss_dssp HHHHHHHHTTTSCCCCEECCHHHHHHHTSEEEEEEGGGSGGGBTHHHHHHHHHTTCCHHHH----HHCEEECCSSHHHHH
T ss_pred HHHHHHHHhccCCCCCEEEchhhhHHHCCEEEEEeCCCCCCCCHHHHHHHHHHHHhhhccc----cceeeeeccchhhHH
Confidence 4567899999999999999999998888999999999999999999999999988765543 256999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhch
Q 020528 85 LAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETT 164 (325)
Q Consensus 85 lA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~ 164 (325)
+|++|+.+|++|+||+|++.+..|+++++.+||+|+.+++ +++++...+++++++. +++|++||+|+.+ +.||.++
T Consensus 84 ~A~~a~~~g~~~~i~~p~~~~~~k~~~l~~~Ga~vi~~~~--~~~~~~~~a~~~a~~~-g~~~~~~~~~~~~-~~g~~t~ 159 (318)
T d1v71a1 84 IALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDR--YKDDREKMAKEISERE-GLTIIPPYDHPHV-LAGQGTA 159 (318)
T ss_dssp HHHHHHHTTCCEEEEEETTCCHHHHHHHHHTTCEEEEECT--TTTCHHHHHHHHHHHH-TCBCCCSSSSHHH-HHHHTHH
T ss_pred HHHhhcccccceeecccccccHHHHHHHHHcCCcEEeccC--CchHHHHHHHHHHHhc-CCEecCCcccccc-ccccchH
Confidence 9999999999999999999999999999999999999985 5677888888988887 7999999998876 7899999
Q ss_pred HHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCC-----CCCcccccCCCCC--
Q 020528 165 GPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGK-----PGPHKIQGIGAGF-- 233 (325)
Q Consensus 165 ~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~-----~~~~~~~gl~~~~-- 233 (325)
++||++|+ +.+|+||+|+|+||+++|++.++|..+|++++++|++++++++. .+. ...+..+++..+.
T Consensus 160 ~~Ei~~q~-~~~d~vvv~~G~GG~~~Gi~~~~~~~~~~~~ii~v~~~~~~~~~~s~~~~~~~~~~~~~~~a~~~~~~~~~ 238 (318)
T d1v71a1 160 AKELFEEV-GPLDALFVCLGGGGLLSGSALAARHFAPNCEVYGVEPEAGNDGQQSFRKGSIVHIDTPKTIADGAQTQHLG 238 (318)
T ss_dssp HHHHHHHH-CCCSEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEGGGCHHHHHHHHTSCCCCCCCCCSCTTSCCSSCC
T ss_pred HHHHHHhc-CCCCEEEEcCCchHHHHHHHHHHHhhCCCceeecccccchhhhhhccccccccccCCCCccccccccCCcc
Confidence 99999999 57999999999999999999999999999999999999887642 111 1122333443332
Q ss_pred -CccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhH
Q 020528 234 -IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFE 312 (325)
Q Consensus 234 -~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~ 312 (325)
.++.+.++.+|+++.|+|+|+++++++++++||+++||++|+++|+++++.++ .++++||+|+|| ||.+++ .|.
T Consensus 239 ~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~egi~~eps~a~~lAa~~~~~~~--~~~~~Vv~il~G-GN~d~~--~~~ 313 (318)
T d1v71a1 239 NYTFSIIKEKVDDILTVSDEELIDCLKFYAARMKIVVEPTGCLSFAAARAMKEK--LKNKRIGIIISG-GNVDIE--RYA 313 (318)
T ss_dssp HHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHTCCCCCGGGGHHHHHHHHTGGG--GTTCEEEEEECB-CCCCHH--HHH
T ss_pred hHHHHHHHhccCceeeECHHHHHHHHHHHHHHcCcEEeHHHHHHHHHHHHhHHH--cCCCcEEEEeCC-CCCCHH--HHH
Confidence 24455677899999999999999999999999999999999999999988665 468899999975 776665 477
Q ss_pred HHHH
Q 020528 313 SVKK 316 (325)
Q Consensus 313 ~~~~ 316 (325)
+++.
T Consensus 314 ~~~~ 317 (318)
T d1v71a1 314 HFLS 317 (318)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 6654
|
| >d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.9e-58 Score=419.50 Aligned_cols=291 Identities=53% Similarity=0.811 Sum_probs=250.3
Q ss_pred cchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHH
Q 020528 6 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGL 85 (325)
Q Consensus 6 ~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~al 85 (325)
++++++|++.+|+|||++++++. +.+||+|+|++|||||||+|++.+++.++++.|++.++ .+++++|+||||.|+
T Consensus 1 ~k~~~~i~~~ig~TPLi~L~~l~---~~~i~~K~E~~~ptGSfK~Rga~~~i~~a~~~g~~~~~-~~vv~assGn~g~a~ 76 (302)
T d1fcja_ 1 SKIYEDNSLTIGHTPLVRLNRIG---NGRILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPG-VELVEPTNGNTGIAL 76 (302)
T ss_dssp CCEESSGGGGCCCCCEEECSSSS---SSCEEEEETTSSGGGBTHHHHHHHHHHHHHHHTCCCTT-CEEEEECSSHHHHHH
T ss_pred CchHhHHHHhhCCCCcEECCccC---CCEEEEEecCCCCCCCCHHHHHHHHHHHHHHcCCCCCC-ceEEEeccccchhHH
Confidence 35788999999999999877653 46899999999999999999999999999999998776 679999999999999
Q ss_pred HHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHH---HHhCCCeEEeCCCCCCcchHhHHh
Q 020528 86 AFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEI---RDKTPNSYVLQQFENPANPKIHYE 162 (325)
Q Consensus 86 A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~---~~~~~~~~~~~~~~n~~~~~~g~~ 162 (325)
|++|+.+|++|+||+|.++++.|+.+++.+|++|+.+++. +++....++.. .++..+.++.++++++.++..|++
T Consensus 77 A~~a~~~g~~~~i~~p~~~~~~k~~~~~~~ga~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (302)
T d1fcja_ 77 AYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGA--KGMKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEK 154 (302)
T ss_dssp HHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG--GHHHHHHHHHHHHHHTSTTTEEECCTTTCTHHHHHHHH
T ss_pred HHHHHHhccCCceEEeecCcHHHHHHHHHhccceEEeccc--cccchhhhHHHHHHhhhccceeccccccccchhHHHHh
Confidence 9999999999999999999999999999999999999964 33333333222 223336788889888888888999
Q ss_pred chHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcE--EEEEecCCCcccc------CCCCCCcccccCCCCCC
Q 020528 163 TTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIK--LYGVEPVESAVLS------GGKPGPHKIQGIGAGFI 234 (325)
Q Consensus 163 t~~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~--vigV~~~~~~~~~------~~~~~~~~~~gl~~~~~ 234 (325)
+++.||++|+++.||+||+|+|+||+++|++.++|...+.++ ++++++..+..+. ......+.+++|+.+..
T Consensus 155 ti~~Ei~e~~~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~~~~v~~~~~~s~~~~~~~~~~~~~~~~~~~~gig~~~~ 234 (302)
T d1fcja_ 155 TTGPEIWEDTDGQVDVFISGVGTGGTLTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGEEIKPGPHKIQGIGAGFI 234 (302)
T ss_dssp THHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHTTTCCTTCEEEEEEETTSCHHHHHHTTCCCCCCCCSCTTSCCSSC
T ss_pred HHHHHHHHhcCCCCCEEEEcCCCccccccceeeeeeccccccccccccccccchhhhccccccccccCCceecccCCCcC
Confidence 999999999987899999999999999999999999988754 5556666665432 11233456788988888
Q ss_pred ccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCC
Q 020528 235 PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFG 302 (325)
Q Consensus 235 ~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g 302 (325)
|+.+++.++|+++.|+|+|+++++++|++++|+++||++|++++++++++++...++++||+|+||+|
T Consensus 235 ~~~l~~~~~d~~~~Vsd~ea~~a~~~l~~~~gi~~epssaa~laaa~~l~~~~~~~~~~vvvilc~~G 302 (302)
T d1fcja_ 235 PGNLDLKLIDKVVGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQEDESFTNKNIVVILPSSG 302 (302)
T ss_dssp CTTCCGGGCSEEEEECHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTSGGGTTCCEEEEECBCC
T ss_pred chhhhcccCcEEEEECHHHHHHHHHHHHHHcCCEEcHHHHHHHHHHHHHHHhcCCCcCeEEEEeCCCC
Confidence 99999999999999999999999999999999999999999999999987765567889999999987
|
| >d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: L-serine dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7e-59 Score=425.54 Aligned_cols=291 Identities=19% Similarity=0.172 Sum_probs=253.7
Q ss_pred hCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCe
Q 020528 16 IGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYR 95 (325)
Q Consensus 16 ~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~ 95 (325)
.-+|||+++++|++.+|.+||+|+|++|||||||||++.+++..+.++|. ++||++|+||||+|+|++|+++|++
T Consensus 5 ~~~TPl~~~~~L~~~~g~~i~~K~E~~nptGSfK~R~a~~~~~~a~~~g~-----~~vv~aSsGN~g~a~A~~a~~~G~~ 79 (319)
T d1p5ja_ 5 HVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQGC-----AHFVCSSAGNAGMAAAYAARQLGVP 79 (319)
T ss_dssp SCCCCEEEEHHHHHHHTSCEEEECGGGSGGGBTTHHHHHHHHHHHHHTTC-----CEEEECCSSHHHHHHHHHHHHHTCC
T ss_pred ceeCCcEEhHHhHHHHCCEEEEEeCCCCCCCCcHHHHHHHHHHHHHHcCC-----CEEEEeCCCcHHHHHHHHhhhcccc
Confidence 44799999999998888999999999999999999999999999999987 6899999999999999999999999
Q ss_pred EEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHHHhhhCCC
Q 020528 96 LIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 175 (325)
Q Consensus 96 ~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~ql~~~ 175 (325)
|+||||++++..|+++++.+|++|+.+++ +++++.+.++++++++++++|+++|+|+.+ +.|+.+++.||++|+...
T Consensus 80 ~~i~~p~~~~~~k~~~~~~~Ga~v~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~g~~~~~~Ei~~q~~~~ 156 (319)
T d1p5ja_ 80 ATIVVPGTTPALTIERLKNEGATCKVVGE--LLDEAFELAKALAKNNPGWVYIPPFDDPLI-WEGHASIVKELKETLWEK 156 (319)
T ss_dssp EEEEECTTCCHHHHHHHHHTTCEEEECCS--CHHHHHHHHHHHHHHSTTEEECCSSCCHHH-HHHHTHHHHHHHHHCSSC
T ss_pred ceeccccccccccccccccceeccccccc--cchhHHHHHHHHhhccCccccccccccccc-ccccchhhhhhhccccCC
Confidence 99999999999999999999999999985 689999999999988878899999999887 789999999999999778
Q ss_pred CCEEEEecCCchhHHHHHHHHHhhC-CCcEEEEEecCCCcccc----CCCC-----CCcccccCCCCCC---cccccccc
Q 020528 176 IDALVSGIGTGGTVTGAGKYLKEHN-PEIKLYGVEPVESAVLS----GGKP-----GPHKIQGIGAGFI---PGVLDVNL 242 (325)
Q Consensus 176 ~D~iv~pvG~Gg~~aGi~~~~k~~~-~~~~vigV~~~~~~~~~----~~~~-----~~~~~~gl~~~~~---~~~~~~~~ 242 (325)
||++|+|+|+||+++|++.++++.. +++++++|+|++++++. .+.+ ..+..++++.+.. ++.+.+++
T Consensus 157 ~d~vv~~vg~Gg~~~g~~~~~~~~~~~~~~~i~ve~~~~~~~~~s~~~g~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~ 236 (319)
T d1p5ja_ 157 PGAIALSVGGGGLLCGVVQGLQECGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAKALGVKTVGSQALKLFQEH 236 (319)
T ss_dssp CSEEEEECSSSHHHHHHHHHHHHTTCTTCCEEEEEETTSCHHHHHHHHTSCCCCSCCCCSCGGGCCSSCCHHHHHHHHHS
T ss_pred CceeeecccCCcchhhhHHHHHHhccCCeeeeecccccccccchhhhccccccccccccccccccccccccccchhhhhc
Confidence 9999999999999999999999875 78999999999998754 2222 2344567765542 22344577
Q ss_pred CCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHh-----cC--CCCCCEEEEEeCCCCCCCcchhhhHHHH
Q 020528 243 LDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAK-----RP--ENAGKLIVVVFPSFGERYLSSVLFESVK 315 (325)
Q Consensus 243 ~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~-----~~--~~~~~~vv~i~t~~g~~~~~~~~~~~~~ 315 (325)
.|+.+.|+|+|+++++++|+++||+++||+||+++|++++.+. ++ ..+++++|+++|+|||.|+|+ ++.|.
T Consensus 237 ~~~~~~V~d~e~~~a~~~l~~~egi~~epssa~~~aal~~~~~~~~~~~~~~~~~~~~vVvv~~~G~n~d~~~--l~~~~ 314 (319)
T d1p5ja_ 237 PIFSEVISDQEAVAAIEKFVDDEKILVEPACGAALAAVYSHVIQKLQLEGNLRTPLPSLVVIVCGGSNISLAQ--LRALK 314 (319)
T ss_dssp CEEEEEECHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHTTHHHHHHHTTSSCSSCSCEEEECCBCSSCCHHH--HHHHH
T ss_pred cceeeecCHHHHHHHHHHHHHHcCEEEeHHHHHHHHHHHHHHHHHHHHhccccCCCCCEEEEEcCCCCCCHHH--HHHHH
Confidence 8999999999999999999999999999999999999976421 11 246678999999999999887 45544
Q ss_pred H
Q 020528 316 K 316 (325)
Q Consensus 316 ~ 316 (325)
+
T Consensus 315 e 315 (319)
T d1p5ja_ 315 E 315 (319)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine deaminase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.5e-58 Score=425.39 Aligned_cols=288 Identities=23% Similarity=0.281 Sum_probs=252.7
Q ss_pred HHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHH
Q 020528 11 DVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAA 90 (325)
Q Consensus 11 ~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~ 90 (325)
+|.+.+++|||+++++|++.+|.+||+|+|++|||||||||++.+++..+.+++. ..+|+++|+||||.|+|++|+
T Consensus 20 ~v~~~~~~TPL~~~~~L~~~lg~~i~~K~E~~nptGS~KdRga~~~i~~~~~~~~----~~~vv~assGN~g~a~A~~a~ 95 (331)
T d1tdja1 20 PVYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQK----AHGVITASAGNHAQGVAFSSA 95 (331)
T ss_dssp CGGGTCCCCCEEECHHHHHHTTSEEEEECGGGSTTSSSTHHHHHHHHHTTTTSSC----SSSCEEEECSSSHHHHHHHHH
T ss_pred ccceeccCCceeEHHHhhHHHCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhCC----CCeeeecccchhHHHHHHhhc
Confidence 5678899999999999998888999999999999999999999999998776554 357999999999999999999
Q ss_pred HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHHHh
Q 020528 91 AKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWK 170 (325)
Q Consensus 91 ~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~ 170 (325)
.+|++|+|++|+.++..|+++++.+||+|+.++. ++++....+.+..++. +++|+++++|+.+ +.||.+++.||++
T Consensus 96 ~~g~~~~i~~p~~~~~~k~~~l~~~Ga~vi~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~g~~t~~~Ei~~ 171 (331)
T d1tdja1 96 RLGVKALIVMPTATADIKVDAVRGFGGEVLLHGA--NFDEAKAKAIELSQQQ-GFTWVPPFDHPMV-IAGQGTLALELLQ 171 (331)
T ss_dssp HTTCCEEEECCSSCCHHHHHHHHHHSCEEECCCS--SHHHHHHHHHHHHHHH-CCEECCSSCCHHH-HHHHHHHHHHHHH
T ss_pred cccccceeeccccchhHHHHHHHhcCCEEEEcCc--ccccchhhhhhhhhcC-CCccccccCChHH-hhhhhhHHHHHHH
Confidence 9999999999999999999999999999999985 5777888888887776 7999999999987 7899999999999
Q ss_pred hhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----CCcccccCCCCCC---cccc
Q 020528 171 GTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKP-----GPHKIQGIGAGFI---PGVL 238 (325)
Q Consensus 171 ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~-----~~~~~~gl~~~~~---~~~~ 238 (325)
|. +.||+||+|+|+||+++|++.+|++.+|++|||+|||++++++. .+++ ..+...++..+.+ ++.+
T Consensus 172 q~-~~~D~vv~~~G~GG~~aG~~~~~~~~~~~~~ii~ve~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~~~ 250 (331)
T d1tdja1 172 QD-AHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSACLKAALDAGHPVDLPRVGLFAEGVAVKRIGDETFRL 250 (331)
T ss_dssp HC-TTCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEETTTCHHHHHHHHTSCCCCSCCCSSSSTTCCSSCCCHHHHH
T ss_pred hc-CCCCEEEEeCChhHHHHHHHHHHHHhCCCcEEEEecccccchHHHHHhCCCeeecCCCCceeccccCCCCCHHHHHH
Confidence 98 67999999999999999999999999999999999999998764 2222 1233455554433 2334
Q ss_pred ccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcch
Q 020528 239 DVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSS 308 (325)
Q Consensus 239 ~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~ 308 (325)
.++++|+++.|+|+|++++++.|++++|+++||+||+++|++++++++...++++||+|+| |||.+++.
T Consensus 251 ~~~~~d~~~~V~d~e~~~a~~~la~~eGi~~eps~~~alAal~~~~~~~~~~g~~Vv~vlt-Ggnid~~~ 319 (331)
T d1tdja1 251 CQEYLDDIITVDSDAICAAMKDLFEDVRAVAEPSGALALAGMKKYIALHNIRGERLAHILS-GANVNFHG 319 (331)
T ss_dssp HTTSCCEEEEECHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHTCCSCEEEEECC-CCCCCTTH
T ss_pred hhccCCEEEEecHHHHHHHHHHHHHHcCcEEeHHHHHHHHHHHHHHhhccCCcCeEEEEeC-CCCCCcch
Confidence 5678999999999999999999999999999999999999999987776667899999996 57877775
|
| >d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine deaminase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=6.7e-58 Score=417.39 Aligned_cols=288 Identities=22% Similarity=0.288 Sum_probs=246.5
Q ss_pred ccchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHH
Q 020528 5 KSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIG 84 (325)
Q Consensus 5 ~~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 84 (325)
...++++|...+|+|||+++++|++.+|.+||+|+|++|||||||||+|.+++.++.+ ..+|+++|+||||.|
T Consensus 6 i~~a~~~i~~~ig~TPL~~~~~L~~~~g~~i~~K~E~~nPtGSfKdRgA~~~~~~~~~-------~~~vv~aSsGN~g~a 78 (310)
T d1ve5a1 6 LYAAFRRIAPYTHRTPLLTSRLLDGLLGKRLLLKAEHLQKTGSFKARGALSKALALEN-------PKGLLAVSSGNHAQG 78 (310)
T ss_dssp HHHHHHHHGGGSCCCCEEECHHHHHHTTSEEEEEEGGGSGGGBTHHHHHHHHHHHSSS-------CCCEEEECSSHHHHH
T ss_pred HHHHHHHHhCcCCCCceeEhhhhhHHhCCEEEEEeCCCCCcCCcHHHHHHHHHHHhcc-------cCCccccCchhhHHH
Confidence 3567899999999999999999998888999999999999999999999877665321 145899999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhch
Q 020528 85 LAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETT 164 (325)
Q Consensus 85 lA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~ 164 (325)
+|++|+.+|++|+||||++.+..|+++++.+|++++.+++ ++++....+++.+++. +++|++||+||.+ +.|+.++
T Consensus 79 ~A~~aa~~G~~~~i~vp~~~~~~~~~~~~~~Ga~vi~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~np~~-~~g~~t~ 154 (310)
T d1ve5a1 79 VAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDRGV--TAKNREEVARALQEET-GYALIHPFDDPLV-IAGQGTA 154 (310)
T ss_dssp HHHHHHHHTCCEEEECCCC--CCHHHHHHHTTCEEECTTC--CTTTHHHHHHHHHHHH-CCEECCSSSSHHH-HHHHHHH
T ss_pred HHHHHHHcCCeEEEeecccchHHHHHHHhhhccccceeec--cchhHHHHHHHHHHhc-CCcCCCCCCChhh-Hhhhhhh
Confidence 9999999999999999999999999999999999999986 4678888888888886 7999999999988 7899999
Q ss_pred HHHHHhhhC---CCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC------CCcccccCCC
Q 020528 165 GPEIWKGTG---GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKP------GPHKIQGIGA 231 (325)
Q Consensus 165 ~~Ei~~ql~---~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~------~~~~~~gl~~ 231 (325)
+.||++|+. ..||+|++|+|+||+++|++.++++.++.+++++||+.+++++. .+++ ..+...++..
T Consensus 155 ~~Ei~~q~~~~~~~~d~vv~~~g~Gg~~~g~~~~~~~~~~~~~ii~ve~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 234 (310)
T d1ve5a1 155 GLELLAQAGRMGVFPGAVLAPVGGGGLLAGLATAVKALSPTTLVLGVEPEAADDAKRSLEAGRILRLEAPPRTRADGVRT 234 (310)
T ss_dssp HHHHHHHHHHHTCCCSEEEEECSSSHHHHHHHHHHHHHCTTSEEEEEEEGGGCHHHHHHHHTSCCCCSSCCCCSCGGGCC
T ss_pred HHHHHHHHHhcCCceeeeeeccCcchhhhhhhhhhhccCCccceEEEEeeccchhhhhhccccccccCccccccccccCC
Confidence 999999973 46999999999999999999999999999999999999998763 1221 1223344433
Q ss_pred ---CCCccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcc
Q 020528 232 ---GFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLS 307 (325)
Q Consensus 232 ---~~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~ 307 (325)
+..++.+.++.+|+++.|+|+|+++++++|+++||+++||+||+++|+++++.++ .+++||+++| |||.+++
T Consensus 235 ~~~g~~~~~~~~~~~d~~v~V~d~e~~~a~~~La~~eGi~vepssaa~lAa~~~~~~~---~~~~Vvvvl~-GgN~d~~ 309 (310)
T d1ve5a1 235 LSLGERTFPILRERVDGILTVSEEALLEAERLLFTRTKQVVEPTGALPLAAVLEHGAR---LPQTLALLLS-GGNRDFS 309 (310)
T ss_dssp SSCCTTTHHHHHHHCCEEEEECHHHHHHHHHHHHHHTCBCCCGGGGHHHHHHHHHGGG---SCSEEEEEEC-BCCCCCC
T ss_pred CCcchhhHHHhcccCCeEEEECHHHHHHHHHHHHHHcCCEEcHHHHHHHHHHHHhhHh---cCCCEEEEeC-CCCccCC
Confidence 3344556677899999999999999999999999999999999999999987654 4589999997 5787664
|
| >d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine synthase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=7e-53 Score=390.29 Aligned_cols=290 Identities=21% Similarity=0.229 Sum_probs=244.4
Q ss_pred hHHHhhhhCCCCceecccc--cCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHH
Q 020528 9 AKDVTELIGKTPLVYLNRI--VDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLA 86 (325)
Q Consensus 9 ~~~i~~~~~~TPL~~~~~l--~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA 86 (325)
.+.|++++|+|||++++++ +...|++||+|+|++|||||||||++.+++.++.++|. ++++++|+||||.++|
T Consensus 19 ~~~i~~~~gnTPLv~l~~~~l~~~~g~~i~~K~E~~nptGSfK~R~a~~~i~~a~~~g~-----~~iv~~SsGN~g~a~a 93 (351)
T d1v7ca_ 19 TPVISLLEGSTPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKAVEGGA-----QAVACASTGNTAASAA 93 (351)
T ss_dssp SCCCCSCCCCCCEEECCCCHHHHTTTEEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTC-----SEEEEECSSHHHHHHH
T ss_pred CCccccCCCCCCCeECCCcchhhccCCEEEEEEcCCCCccChHHHHHHHHHHHHHhcCC-----CeeeeeccccHHHHHH
Confidence 3457888899999998864 46678899999999999999999999999999999886 6799999999999999
Q ss_pred HHHHHcCCeEEEEecCCC-CHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchH
Q 020528 87 FMAAAKGYRLIITMPASM-SLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTG 165 (325)
Q Consensus 87 ~~a~~~g~~~~i~~p~~~-~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~ 165 (325)
++|+++|++|+|+||.+. +..+..+++.+||+|+.+++ +++++.+.+++++++. ++++.++ .|+.+ +.||.+++
T Consensus 94 ~~a~~~g~~~~i~~p~~~~~~~~~~~~~~~Ga~vi~~~~--~~~~~~~~a~~l~~~~-~~~~~~~-~~~~~-~~g~~t~~ 168 (351)
T d1v7ca_ 94 AYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVEG--NFDDALRLTQKLTEAF-PVALVNS-VNPHR-LEGQKTLA 168 (351)
T ss_dssp HHHHHHTCEEEEEEETTCSCHHHHHHHHHTTCEEEEEES--CHHHHHHHHHHHHHHS-SCEECST-TSHHH-HHHHTHHH
T ss_pred HHHhhhcccceeecCCchHHHHHHHhhhcCCCceEeecc--ccchhhhhHHHHhhhh-ccccccc-cCchh-hhhhhhHH
Confidence 999999999999999875 57788889999999999985 5889999999999887 6666544 45554 78999999
Q ss_pred HHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhh------CCCcEEEEEecCCCccccCCCCCC---cccc--cCCCC--
Q 020528 166 PEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEH------NPEIKLYGVEPVESAVLSGGKPGP---HKIQ--GIGAG-- 232 (325)
Q Consensus 166 ~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~------~~~~~vigV~~~~~~~~~~~~~~~---~~~~--gl~~~-- 232 (325)
+||++|+...+|++++++|+||+++|++.+++.. .+.+++++|++.++..+....+.. +... .+...
T Consensus 169 ~Ei~eQl~~~~d~~~~~~g~gg~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (351)
T d1v7ca_ 169 FEVVDELGDAPHYHALPVGNAGNITAHWMGYKAYHALGKAKRLPRMLGFQAAGAAPLVLGRPVERPETLATAIRIGNPAS 248 (351)
T ss_dssp HHHHHHHSSCCSEEEEECSSSHHHHHHHHHHHHHHHTTSCSSCCEEEEEEEGGGCHHHHTSCCSSCCCSCGGGCCSSCTT
T ss_pred HHHHHHHhhhccceeeeecccCCcchhHHHHHHHhhcccccCCcceeeeeccccchhhhcccccCCcccccccccccCcc
Confidence 9999999888999999999999999999988765 367899999999987664332211 1111 11111
Q ss_pred -CCccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCC-CCCCEEEEEeCCCCCCCcch
Q 020528 233 -FIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE-NAGKLIVVVFPSFGERYLSS 308 (325)
Q Consensus 233 -~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~i~t~~g~~~~~~ 308 (325)
..+..+.+...+.++.|+|+|+++++++++++||+++||+||++++++++++++++ .++++||+++||+|+||+|+
T Consensus 249 ~~~~~~~~~~~~~~~~~V~d~ea~~a~~~l~~~eGi~v~pssg~alAa~~~~~~~~~~~~~~~VV~i~tg~G~k~~~~ 326 (351)
T d1v7ca_ 249 WQGAVRAKEESGGVIEAVTDEEILFAYRYLAREEGIFCEPASAAAMAGVFKLLREGRLEPESTVVLTLTGHGLKDPAT 326 (351)
T ss_dssp HHHHHHHHHHHTCEEEEECHHHHHHHHHHHHHHTCCCBCHHHHHHHHHHHHHHHTTCSCSSEEEEEEECBBGGGCGGG
T ss_pred cchhhhhhhccCcEEEEEchHHHHHHHHHHHHHcCcEECHHHHHHHHHHHHHHHhCCCCCCCeEEEEeCCCcccCHHH
Confidence 11223345667889999999999999999999999999999999999999988865 56889999999999999997
|
| >d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine synthase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=9.6e-52 Score=396.34 Aligned_cols=298 Identities=17% Similarity=0.140 Sum_probs=243.1
Q ss_pred cccchhHHHhhhhCCCCceecccccCC-CC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChh
Q 020528 4 EKSVIAKDVTELIGKTPLVYLNRIVDG-CV-ARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNT 81 (325)
Q Consensus 4 ~~~~~~~~i~~~~~~TPL~~~~~l~~~-~~-~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~ 81 (325)
|+......|++++|+|||+++++|++. +| .+||+|+|++|||||||||++.+++..+.+.+....+..+|+++|+|||
T Consensus 107 p~~~~~~~v~lgeG~TPLv~~~~L~~~~lG~~~ly~K~E~~nPTGSfKDRga~~~i~~a~~~~~~~~~~~~vv~aSsGNt 186 (477)
T d1e5xa_ 107 PEIDDDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDT 186 (477)
T ss_dssp TTCCGGGCCCCCCCCCCEEECHHHHHHHHCCSSEEEEETTSSTTSBTTHHHHHHHHHHHHHHHHTTCCCCEEEECCCSHH
T ss_pred CCCCCCCccccCCCCCceEEchhhhHhhCCCceEEEEECCCCCCcccHHHHHHHHHHHHHHhccccCCcceEEeecCchH
Confidence 334445668999999999999999864 44 5899999999999999999999999998876655555578999999999
Q ss_pred HHHHHHHHHHcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhH
Q 020528 82 GIGLAFMAAAKGYRLIITMPAS-MSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIH 160 (325)
Q Consensus 82 g~alA~~a~~~g~~~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g 160 (325)
|+|+|++|+++|++|+||+|.+ .+..|+.+++.+||+|+.+++ +++++.+.+++++++. + +|+.++.|+.+ +.|
T Consensus 187 g~AlAa~aa~~Gi~~~I~~P~~~~s~~k~~~~~~~GA~V~~v~g--~~dda~~~~~e~a~~~-~-~~~~~~~N~~~-~~g 261 (477)
T d1e5xa_ 187 SAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDT--DFDGCMKLIREITAEL-P-IYLANSLNSLR-LEG 261 (477)
T ss_dssp HHHHHHHHHHHTCCEEEEEEGGGCCHHHHHHHHHTTCEEEEEES--CHHHHHHHHHHHHHHS-C-EEEGGGSHHHH-HHH
T ss_pred HHHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHhcCcccccccc--CchhhHHHhhhhcccc-c-eeccccccccc-chh
Confidence 9999999999999999999986 788999999999999999986 6899999999998886 4 45566678876 679
Q ss_pred HhchHHHHHhhhCC-CCCEEEEecCCchhHHHHHHHHHhhC------CCcEEEEEecCCCcccc----CCCCC-------
Q 020528 161 YETTGPEIWKGTGG-KIDALVSGIGTGGTVTGAGKYLKEHN------PEIKLYGVEPVESAVLS----GGKPG------- 222 (325)
Q Consensus 161 ~~t~~~Ei~~ql~~-~~D~iv~pvG~Gg~~aGi~~~~k~~~------~~~~vigV~~~~~~~~~----~~~~~------- 222 (325)
++++++||++|+.+ .||++++|+|+||+++|++.+++++. ..+++++|++++++++. .+...
T Consensus 262 ~~t~~~Ei~~ql~~~~pd~v~vp~G~gg~~~g~~~g~~~l~~~G~~~~~P~~~~v~a~~~~~~~~~~~~g~~~~~~~~~~ 341 (477)
T d1e5xa_ 262 QKTAAIEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFKMCQELGLVDRIPRMVCAQAANANPLYLHYKSGWKDFKPMTAS 341 (477)
T ss_dssp HTHHHHHHHHHTTSCCCSEEEEECSSTHHHHHHHHHHHHHHHTTSSSCCCEEEEEEETTSSTHHHHHHTTTTTCCC----
T ss_pred hhHHHHHHHHhhccccceeeeecccCCcchhhHHHHHHHHhhcCccccCceEEEEeccchhhHHHHHHcCCCcccccccc
Confidence 99999999999964 59999999999999999999998763 35799999999998753 22211
Q ss_pred CcccccCCCCCCccccc------cccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCC-CCCCEEE
Q 020528 223 PHKIQGIGAGFIPGVLD------VNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE-NAGKLIV 295 (325)
Q Consensus 223 ~~~~~gl~~~~~~~~~~------~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv 295 (325)
.+...++..+. |..+. .+.-+.++.|+|+|+.++++ +++++|+++||+||+++++++++.+++. .++++||
T Consensus 342 ~T~a~~i~i~~-p~~~~~~l~~~~~~~g~~~~VsDeei~~a~~-l~~~eGi~vePssA~alAal~kl~~~g~i~~~~~VV 419 (477)
T d1e5xa_ 342 TTFASAIQIGD-PVSIDRAVYALKKCNGIVEEATEEELMDAMA-QADSTGMFICPHTGVALTALFKLRNQGVIAPTDRTV 419 (477)
T ss_dssp -------------CCCHHHHHHHHHTTCEEEEECHHHHHHHHH-HHHHTTCCCCHHHHHHHHHHHHHHHTTSSCTTCCEE
T ss_pred ccccccccccc-ccchHHHHHHHhhcCceEEecCHHHHHHHHH-HHHHCCcEEChHHHHHHHHHHHHHHhCCCCCCCcEE
Confidence 12233333332 33332 23345688999999999987 5688999999999999999999988765 5789999
Q ss_pred EEeCCCCCCCcch
Q 020528 296 VVFPSFGERYLSS 308 (325)
Q Consensus 296 ~i~t~~g~~~~~~ 308 (325)
+++|++|.||.+.
T Consensus 420 vl~Tg~glKf~~~ 432 (477)
T d1e5xa_ 420 VVSTAHGLKFTQS 432 (477)
T ss_dssp EEECBCGGGGHHH
T ss_pred EEeCcCcccCHHH
Confidence 9999999999875
|
| >d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Tryptophan synthase, beta-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=3.9e-50 Score=376.35 Aligned_cols=291 Identities=23% Similarity=0.290 Sum_probs=226.9
Q ss_pred HhhhhC-CCCceecccccCCC-CceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHH
Q 020528 12 VTELIG-KTPLVYLNRIVDGC-VARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMA 89 (325)
Q Consensus 12 i~~~~~-~TPL~~~~~l~~~~-~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a 89 (325)
+..++| +|||+++++|++.+ +++||+|+|++|||||||||++.+++..|.+.|. .+.++++|+||||+++|++|
T Consensus 43 ~~~~~~rpTPLi~~~~Ls~~lgg~~Iy~K~E~lnptGS~KdR~a~~~i~~a~~~G~----~~~v~~~s~Gn~g~a~A~aa 118 (386)
T d1v8za1 43 LKTWAGRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGK----TRLIAETGAGQHGVATAMAG 118 (386)
T ss_dssp HHHTTCCSCCEEECHHHHHHHTSSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTC----CEEEEEESSSHHHHHHHHHH
T ss_pred HHhcCCCCCcceEhHhhHHhcCCCeEEEEeccCCCCCCccchHHHHHHHHHhhcCC----ceeEeecccchHHHHHHHHH
Confidence 345677 59999999999765 5899999999999999999999999999999997 36788899999999999999
Q ss_pred HHcCCeEEEEecCC---CCHHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHHHH-HhCCCeEE-----eCCCCCCcchHh
Q 020528 90 AAKGYRLIITMPAS---MSLERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIR-DKTPNSYV-----LQQFENPANPKI 159 (325)
Q Consensus 90 ~~~g~~~~i~~p~~---~~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~-~~~~~~~~-----~~~~~n~~~~~~ 159 (325)
+.+|++|+||||.. .+..|+.+++.+||+|+.++.. .++.++...+.+.. ......++ .+++.++.++..
T Consensus 119 a~~G~~~~i~mp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (386)
T d1v8za1 119 ALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRD 198 (386)
T ss_dssp HHTTCEEEEEEEHHHHTTCHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHH
T ss_pred HHcCCcccccccchhhhhhHHHHHHHHhcCCeEEEecCCcchHHHHHHHHHHHHHhhhhhhhhccccccCccccchhhhc
Confidence 99999999999954 5568999999999999999753 35666666665443 33222222 234455555567
Q ss_pred HHhchHHHHHhhh----CCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccC--------CCCC-----
Q 020528 160 HYETTGPEIWKGT----GGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSG--------GKPG----- 222 (325)
Q Consensus 160 g~~t~~~Ei~~ql----~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~--------~~~~----- 222 (325)
++.+++.|+.+|+ +..||+||+|+|+|++++|++.++++ .+++++|+|+|.++..... +.+.
T Consensus 199 ~~~~~~~Ei~~q~~~~~g~~pd~vv~~vGgG~~~~g~~~~~~~-~~~v~iigvep~g~~~~~~~~~~~~~~g~~~~~~~~ 277 (386)
T d1v8za1 199 FQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFVN-DKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGM 277 (386)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGTT-CTTSEEEEEEEEETBGGGTBSCCHHHHCEEEEETTE
T ss_pred cchhhhhhHHHHHHHhcCCCCCEEEECCCChHHHHHHHHHhhh-ccCceEEEEecCcccccccccccccccCccccccch
Confidence 8999999998886 35699999999999999999887655 7899999999988765431 1000
Q ss_pred -------------Ccc--cccCCCCCC-c--cccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHH
Q 020528 223 -------------PHK--IQGIGAGFI-P--GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIA 284 (325)
Q Consensus 223 -------------~~~--~~gl~~~~~-~--~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~ 284 (325)
.+. ..++..... + ..+.....++.+.|+|+|+++++++|+++|||+++|+||+|+|++++++
T Consensus 278 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~VtD~E~~~a~~~La~~EGI~~~~~sa~alA~a~kla 357 (386)
T d1v8za1 278 LSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLA 357 (386)
T ss_dssp EEEECBCTTSCBCCCCCSSTTSCCSBCCHHHHHHHHTTSEEEEEEEHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHH
T ss_pred hheeccCCCCcccccccccccccccccchHHHHHHhcCceEEEEECHHHHHHHHHHHHHhcCCeeccHHHHHHHHHHHHH
Confidence 000 001110000 0 0111233457899999999999999999999999999999999999998
Q ss_pred hcCCCCCCEEEEEeCCCCCCCcch
Q 020528 285 KRPENAGKLIVVVFPSFGERYLSS 308 (325)
Q Consensus 285 ~~~~~~~~~vv~i~t~~g~~~~~~ 308 (325)
++. .++++||+++||+|+||+++
T Consensus 358 ~~~-~~~~~VV~iltG~G~kD~~~ 380 (386)
T d1v8za1 358 KEM-SRDEIIIVNLSGRGDKDLDI 380 (386)
T ss_dssp HTS-CTTCEEEEEECBBSGGGHHH
T ss_pred HHc-CCCCEEEEEeCCCccccHHH
Confidence 764 58999999999999999997
|
| >d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Tryptophan synthase, beta-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.7e-48 Score=364.25 Aligned_cols=293 Identities=20% Similarity=0.244 Sum_probs=225.7
Q ss_pred HHhhhhCC-CCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHH
Q 020528 11 DVTELIGK-TPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMA 89 (325)
Q Consensus 11 ~i~~~~~~-TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a 89 (325)
.+..++|+ |||+++++|++.+|++||+|+|++|||||||||++..++..|++.|+ .+.++++|+||||.|+|++|
T Consensus 47 ~~~~~~grpTPL~~~~~Ls~~lg~~IylK~E~lnptGS~K~R~a~~~i~~A~~~G~----~~iv~easaGN~g~a~A~aa 122 (390)
T d1qopb_ 47 LLKNYAGRPTALTKCQNITAGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGK----SEIIAETGAGQHGVASALAS 122 (390)
T ss_dssp HHHHTTCCSCCEEECHHHHTTSSEEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTC----CEEEEEESSSHHHHHHHHHH
T ss_pred HHHhcCCCCchhhEhHhhhhhhCCEEEEEEecCCcccccchhHHHHHHHHHhhcCC----ceeeeehhHHHHHHHHHHHH
Confidence 34566776 99999999999899999999999999999999999999999999997 36778899999999999999
Q ss_pred HHcCCeEEEEecCCC---CHHHHHHHHHcCCEEEEeCC-CCChhHHHHHHHHHH-HhCCCeEEeCCCCC-Cc----chHh
Q 020528 90 AAKGYRLIITMPASM---SLERRMVLLAFGAELVLTDP-ARGMKGAVQKAEEIR-DKTPNSYVLQQFEN-PA----NPKI 159 (325)
Q Consensus 90 ~~~g~~~~i~~p~~~---~~~~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a~~~~-~~~~~~~~~~~~~n-~~----~~~~ 159 (325)
+++|++|+||||... +..++.+|+.|||+|+.++. ..++.+....+.+.. ...+..++.....+ +. ....
T Consensus 123 a~~Gl~~~I~mp~~~~~~k~~~v~~m~~~GAeVv~v~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (390)
T d1qopb_ 123 ALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVRE 202 (390)
T ss_dssp HHHTCEEEEEEEHHHHHHCHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHH
T ss_pred HhccCceEEeecccccccchHHHHHHHhcCceEEEecCCchhhhHhHHHHHHHHhhhhhhhhhccccccccccccccccc
Confidence 999999999999864 46779999999999999974 334566666655443 34334444433222 21 1245
Q ss_pred HHhchHHHHHhhh----CCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCC--------CC------
Q 020528 160 HYETTGPEIWKGT----GGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGG--------KP------ 221 (325)
Q Consensus 160 g~~t~~~Ei~~ql----~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~--------~~------ 221 (325)
++.+++.|+.+|+ +..||+||+|+|+|++++|++.+|++ .+.+++++++|.+......+ .+
T Consensus 203 ~~~~iG~e~~~q~~~~~g~~pD~vv~~vGgGs~~~G~~~~f~~-~~~~~~ig~ep~~~g~~~~~~~a~~~~g~~g~~~~~ 281 (390)
T d1qopb_ 203 FQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFADFIN-DTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGM 281 (390)
T ss_dssp TTTHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGTT-CTTSEEEEEEEEETBGGGTBSCCHHHHSEEEEETEE
T ss_pred hhhhhcchhHHHHHHHcCCccceEEecccccchhhheeccccc-ccceeEeccccccccccccccccccccCcccccccc
Confidence 8899999998875 45699999999999999999999876 56799999998866433211 10
Q ss_pred --------------CCcccccCCCCCC-c--cccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHH
Q 020528 222 --------------GPHKIQGIGAGFI-P--GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIA 284 (325)
Q Consensus 222 --------------~~~~~~gl~~~~~-~--~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~ 284 (325)
......++....+ | ..+.....++.+.|+|+|+++++++|++.|||+++|+++.|++++++++
T Consensus 282 ~~~~~~~~~g~~~~~~s~a~gl~~~~~~~~~~~l~~~g~~~~~~vtD~Ea~~a~~~La~~EGI~~a~Esa~Ava~Ai~~a 361 (390)
T d1qopb_ 282 KAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMM 361 (390)
T ss_dssp EEEECBCTTSCBCCCCCSSGGGCCSSCCHHHHHHHHTTSSEEEEEEHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHH
T ss_pred cccccccCCCccccccccccccccccchhHHHHHHhcCceEEEEECHHHHHHHHHHHHHhcCCeecCchHHHHHHHHHHh
Confidence 0011112211111 1 1122334578999999999999999999999999999999999999987
Q ss_pred hcCCCCCCEEEEEeCCCCCCCcch
Q 020528 285 KRPENAGKLIVVVFPSFGERYLSS 308 (325)
Q Consensus 285 ~~~~~~~~~vv~i~t~~g~~~~~~ 308 (325)
++...++++||+++||+|+|++++
T Consensus 362 ~~~~~~~~~VVv~lsG~G~kD~~~ 385 (390)
T d1qopb_ 362 REQPEKEQLLVVNLSGRGDKDIFT 385 (390)
T ss_dssp HHSTTSCEEEEEEECBBCGGGHHH
T ss_pred hhcCCCCCEEEEEECCCCccCHHH
Confidence 765446677877788889999887
|
| >d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: 1-aminocyclopropane-1-carboxylate deaminase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=5.6e-44 Score=326.01 Aligned_cols=289 Identities=19% Similarity=0.185 Sum_probs=217.3
Q ss_pred HHHhhhhCCCCceecccccCCCCceEEEEeCCCC--CCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHH
Q 020528 10 KDVTELIGKTPLVYLNRIVDGCVARIAAKLEMME--PCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAF 87 (325)
Q Consensus 10 ~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~n--ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 87 (325)
.++++.+++|||+++++|++.+|++||+|+|++| ||||||||++.+++.++.++|.- ...++++|+||||.|+|+
T Consensus 13 p~i~l~~~~TPL~~~~~L~~~~G~~v~iK~Ed~~~~~tgS~K~R~~~~~i~~a~~~g~~---~~~~~~~s~gN~g~a~A~ 89 (325)
T d1j0aa_ 13 PRVELIPWETPIQYLPNISREIGADVYIKRDDLTGLGIGGNKIRKLEYLLGDALSKGAD---VVITVGAVHSNHAFVTGL 89 (325)
T ss_dssp CCCCCCCSCCCEEECHHHHHHHTSEEEEEEGGGSCSTTCSTHHHHHHHHHHHHHHTTCS---EEEEECCTTCHHHHHHHH
T ss_pred CcccCCCCCCceeEHHHhHHHHCCEEEEEecCCCCCCcchhHHHHHHHHHHHHHHCCCC---eeEEEeeCcchHHHHHHH
Confidence 3567889999999999999888899999999877 99999999999999999998861 134456788999999999
Q ss_pred HHHHcCCeEEEEecCCCCHHHHHHHHHcC-CEEEEeCCCCCh-hH--HHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhc
Q 020528 88 MAAAKGYRLIITMPASMSLERRMVLLAFG-AELVLTDPARGM-KG--AVQKAEEIRDKTPNSYVLQQFENPANPKIHYET 163 (325)
Q Consensus 88 ~a~~~g~~~~i~~p~~~~~~~~~~~~~~G-a~v~~~~~~~~~-~~--~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t 163 (325)
+|+.+|++|++|+|...+..+..++..++ ..+..++..... .. ....+.....+....+++.++.+......++.+
T Consensus 90 ~a~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (325)
T d1j0aa_ 90 AAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDAKDSFELMKYAEEIAEELKREGRKPYVIPPGGASPIGTLGYVR 169 (325)
T ss_dssp HHHHTTCEEEEEEESCCCSCHHHHHHHHTTCEEEEESCCSTTTHHHHHHHHHHHHTTSSCCEEEECGGGCSHHHHTHHHH
T ss_pred HHhhhcCceEEEeecccccchhhhhccccceeEEeccCcccccchHHHHHHHHHHHhhccCceeeecCCCccccccccch
Confidence 99999999999999987766655555443 344344432222 11 122222322233344444444333334668899
Q ss_pred hHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCC---CcccccCCCCCCcccccc
Q 020528 164 TGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPG---PHKIQGIGAGFIPGVLDV 240 (325)
Q Consensus 164 ~~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~~---~~~~~gl~~~~~~~~~~~ 240 (325)
++.|+.+|....||+||+|+|+|++++|++.+++...+.+++++|++............ ....+....+...+....
T Consensus 170 ~~~e~~~~~~~~~d~vv~~~G~G~~~~gi~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (325)
T d1j0aa_ 170 AVGEIATQSEVKFDSIVVAAGSGGTLAGLSLGLSILNEDIRPVGIAVGRFGEVMTSKLDNLIKEAAELLGVKVEVRPELY 249 (325)
T ss_dssp HHHHHHHHCCCCCSEEEEEESSSHHHHHHHHHHHHTTCCCEEEEEECSSCSSSHHHHHHHHHHHHHHHTTCCCCSCCEEE
T ss_pred hhcccccccccccceeecccccchhhhhHHHHHHhhCccccccccccccchhhhhhhhcccccccccccCCCcccchhhh
Confidence 99999999988899999999999999999999999999999999998877543211000 011122222222333344
Q ss_pred ccCCeEEEeCHHHHHHHHHHHHHHcCCeeec-chHHHHHHHHHHHhcCCCCCCEEEEEeCCCCC
Q 020528 241 NLLDETVQISSEEAIETAKLLALKEGLLVGI-SSGAATAAAIQIAKRPENAGKLIVVVFPSFGE 303 (325)
Q Consensus 241 ~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p-~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~ 303 (325)
+..++.+.|+|+|+++++++|++++||++|| +||++++++.++++++. .+++||+|+|| |.
T Consensus 250 ~~~~~~~~v~d~e~~~a~~~l~~~eGI~~eP~~s~~a~~~l~~~~~~~~-~~~~vv~i~tG-Gl 311 (325)
T d1j0aa_ 250 DYSFGEYGKITGEVAQIIRKVGTREGIILDPVYTGKAFYGLVDLARKGE-LGEKILFIHTG-GI 311 (325)
T ss_dssp ECSTTSTTCCCHHHHHHHHHHHHHHSCCCCTTTHHHHHHHHHHHHHTTC-SCSEEEEEECC-CH
T ss_pred hceecceeechHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHHHHHcCC-CCCeEEEEECC-ch
Confidence 5678889999999999999999999999999 69999999999988764 58999999987 76
|
| >d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: 1-aminocyclopropane-1-carboxylate deaminase species: Pseudomonas sp., strain ACP [TaxId: 306]
Probab=100.00 E-value=1.8e-42 Score=315.34 Aligned_cols=295 Identities=18% Similarity=0.123 Sum_probs=218.5
Q ss_pred ccchhHHHhhhhCCCCceecccccCCCC--ceEEEEeCCCCCCCCh---hhHHHHHHHHHHHHhCCCCCCCeEEEecCCC
Q 020528 5 KSVIAKDVTELIGKTPLVYLNRIVDGCV--ARIAAKLEMMEPCSSV---KDRIGYSMIADAEEKGLIRPGESVLIEPTSG 79 (325)
Q Consensus 5 ~~~~~~~i~~~~~~TPL~~~~~l~~~~~--~~l~~K~E~~nptGS~---K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssG 79 (325)
+.....++++++|+|||+++++|++.+| ++||+|+|++|||||| |||++.+++.+++++|.- ...++++|+|
T Consensus 2 ~~~~~~r~~l~~g~TPL~~~~~L~~~lg~~~~i~~K~E~~~ptgS~~gnK~R~~~~~i~~a~~~g~~---~v~~~~~s~g 78 (338)
T d1tyza_ 2 NLQRFPRYPLTFGPTPIQPLARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQGCD---TLVSIGGIQS 78 (338)
T ss_dssp CGGGSCCCCCSSSSCCEEECHHHHHHTTSSSEEEEEEGGGSCSSTTCCHHHHHHHHHHHHHHHTTCC---EEEEEEETTC
T ss_pred CcccCCccccCCCCCceeEhHHHHHHHCCCCEEEEEECCCCCCcccccCHHHHHHHHHHHHHHCCCC---eEEEEccCCc
Confidence 3445567899999999999999997665 6999999999999999 999999999999999861 1233467889
Q ss_pred hhHHHHHHHHHHcCCeEEEEecCCCC--------HHHHHHHHHcCCEEEEeCCCCCh--h-HHHHHHHHHHHhCCCeEEe
Q 020528 80 NTGIGLAFMAAAKGYRLIITMPASMS--------LERRMVLLAFGAELVLTDPARGM--K-GAVQKAEEIRDKTPNSYVL 148 (325)
Q Consensus 80 N~g~alA~~a~~~g~~~~i~~p~~~~--------~~~~~~~~~~Ga~v~~~~~~~~~--~-~~~~~a~~~~~~~~~~~~~ 148 (325)
|||.|+|++|+.+|++|+|++|...+ ..+.+.++.+|+.++.++...+. . .....+....+...+.++.
T Consensus 79 N~g~A~A~~a~~~g~~~~i~~p~~~~~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T d1tyza_ 79 NQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRLVPDGFDIGFRRSWEDALESVRAAGGKPYAI 158 (338)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEECCSSCCCTTTTTSHHHHHHHHTTCEEECCCC-------CHHHHHHHHHHHTTCCEEEE
T ss_pred hHHHHHHHHHhhccCcEEEEECCCcchhhhhhhhccccceeeeeccccccccCCcchhHHHHHHHHHhhhhhcccceeee
Confidence 99999999999999999999998644 35567889999999999863221 1 1222223333333345555
Q ss_pred CCCCCCcchHhHHhchHHHHHhh-----hCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCC--
Q 020528 149 QQFENPANPKIHYETTGPEIWKG-----TGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKP-- 221 (325)
Q Consensus 149 ~~~~n~~~~~~g~~t~~~Ei~~q-----l~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~-- 221 (325)
.++.++. +..++.+.+.|...| ....||+||+|+|+|++++|+..+|+...+.++++++++..++.......
T Consensus 159 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~iv~~~G~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (338)
T d1tyza_ 159 PAGCSDH-PLGGLGFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQAGMVVGFAADGRADRVIGVDASAKPAQTREQITR 237 (338)
T ss_dssp CGGGTSS-TTTTTHHHHHHHHHHHHHHHHTSCCSEEEEEESSSHHHHHHHHHHHTTTCGGGEEEEECSSCHHHHHHHHHH
T ss_pred cccCccC-ccccccccchHHHHHHHHHhcCCCccEEEEeecChhHHHHHHHHHHHHhhhhcccceeeccchhhhcccccc
Confidence 4433333 345555555544333 34679999999999999999999999999999999999888754321100
Q ss_pred --CCcccccCC---CCCCccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeec-chHHHHHHHHHHHhcCC-CCCCEE
Q 020528 222 --GPHKIQGIG---AGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGI-SSGAATAAAIQIAKRPE-NAGKLI 294 (325)
Q Consensus 222 --~~~~~~gl~---~~~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p-~sg~a~aa~~~~~~~~~-~~~~~v 294 (325)
......... .....+.+..+..++.+.|+|+|+++++++|+++|||++|| +||++++++.++++++. .++++|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~ei~~a~~~l~~~eGI~~eP~~s~~a~a~l~~~~~~~~~~~g~~V 317 (338)
T d1tyza_ 238 IARQTAEKVGLERDIMRADVVLDERFAGPEYGLPNEGTLEAIRLCARTEGMLTDPVYEGKSMHGMIEMVRNGEFPEGSRV 317 (338)
T ss_dssp HHHHHHHHHTCSSCCCGGGCEEECTTSCSBTTBCCHHHHHHHHHHHHHHSCCCCTTTHHHHHHHHHHHHHTTCSCTTCEE
T ss_pred ccccccccccccCcccchhhhhhhhcccceEEEChHHHHHHHHHHHHHhCCcCChHHHHHHHHHHHHHHhcCCCCCcCeE
Confidence 000000011 11123344567788999999999999999999999999999 58999999999988766 578999
Q ss_pred EEEeCCCCCC
Q 020528 295 VVVFPSFGER 304 (325)
Q Consensus 295 v~i~t~~g~~ 304 (325)
|+|+|+ |..
T Consensus 318 v~i~TG-G~~ 326 (338)
T d1tyza_ 318 LYAHLG-GVP 326 (338)
T ss_dssp EEEECC-CGG
T ss_pred EEEECC-chh
Confidence 999977 543
|
| >d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: 1-aminocyclopropane-1-carboxylate deaminase species: Yeast (Hansenula saturnus) [TaxId: 4906]
Probab=100.00 E-value=8.2e-41 Score=305.18 Aligned_cols=295 Identities=18% Similarity=0.185 Sum_probs=221.0
Q ss_pred hHHHhhhhCCCCceecccccCCCC--ceEEEEeCCCCCCCCh---hhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHH
Q 020528 9 AKDVTELIGKTPLVYLNRIVDGCV--ARIAAKLEMMEPCSSV---KDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGI 83 (325)
Q Consensus 9 ~~~i~~~~~~TPL~~~~~l~~~~~--~~l~~K~E~~nptGS~---K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~ 83 (325)
+.++.+++|+|||+++++|++.+| .+||+|+|++||+||| |+|++.+++.++++.|.- ...++++|+||||.
T Consensus 6 ~~~~~l~~~~TPl~~~~~L~~~lg~~~~i~~K~E~~~p~GSf~gnK~R~~~~~i~~a~~~g~~---~i~~~~as~gN~g~ 82 (341)
T d1f2da_ 6 FAKYPLTFGPSPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDYT---HLVSIGGRQSNQTR 82 (341)
T ss_dssp SCCCCCSSSSCCEEECHHHHHHTTTCSEEEEEEGGGSCSSTTCCHHHHHHTTTHHHHHHSCCS---EEEEEEETTCHHHH
T ss_pred ccCccCCCCCCceeEHHHHHHHHCCCCEEEEEECCCCCCCccccChHHHHHHHHHHHHHCCCC---EEEEEccCcchHHH
Confidence 345678899999999999997776 5899999999999999 999999999999998861 12345788899999
Q ss_pred HHHHHHHHcCCeEEEEecCCCCHH-----------HHHHHHHcCCEEEEeCCCCCh--hHHHH-HHHHHHHhCCCeEEeC
Q 020528 84 GLAFMAAAKGYRLIITMPASMSLE-----------RRMVLLAFGAELVLTDPARGM--KGAVQ-KAEEIRDKTPNSYVLQ 149 (325)
Q Consensus 84 alA~~a~~~g~~~~i~~p~~~~~~-----------~~~~~~~~Ga~v~~~~~~~~~--~~~~~-~a~~~~~~~~~~~~~~ 149 (325)
|+|++|+.+|++|++++|.+.+.. ++..++.+|+++..++...+. ..... ............++..
T Consensus 83 a~A~~a~~~g~~~~i~~p~~~~~~k~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (341)
T d1f2da_ 83 MVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRVIEDGFDIGMRKSFANALQELEDAGHKPYPIP 162 (341)
T ss_dssp HHHHHHHHHTCEEEEEEECCSCCCGGGTTTTTTSHHHHHHHHTTCEEEECCCCCCSSCCHHHHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHhcCceEEEccCCCCHHHHHHHHHhhccceechhhccccccccCCchhhHHHHHHHHHHHHHHhhccCccccC
Confidence 999999999999999999886543 456778999999999864322 12233 3333333433444443
Q ss_pred CC--CCCcchHhHHhchHHHHHhhh---CCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCC---
Q 020528 150 QF--ENPANPKIHYETTGPEIWKGT---GGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKP--- 221 (325)
Q Consensus 150 ~~--~n~~~~~~g~~t~~~Ei~~ql---~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~--- 221 (325)
.+ .++.. ..++.+.+.++.+|+ ...||++|+|+|+|++++|+..+++...+.++++++.+...........
T Consensus 163 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (341)
T d1f2da_ 163 AGCSEHKYG-GLGFVGFADEVINQEVELGIKFDKIVVCCVTGSTTAGILAGMAQYGRQDDVIAIDASFTSEKTKEQTLRI 241 (341)
T ss_dssp GGGTTSTTT-TTHHHHHHHHHHHHHHHHTCCCSEEEEEESSSHHHHHHHHHHGGGTCGGGEEEEECSSCHHHHHHHHHHH
T ss_pred Ccccccccc-hhhehhhhHHHHHHHhhccCCceEEEEecccccchhhHHHHHHHhcccccccccccccchhhhhhhhhcc
Confidence 32 23333 456777777776654 4679999999999999999999999999999999999887753221000
Q ss_pred CCccc--ccCCCCCCccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecc-hHHHHHHHHHHHhcCC-CCCCEEEEE
Q 020528 222 GPHKI--QGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGIS-SGAATAAAIQIAKRPE-NAGKLIVVV 297 (325)
Q Consensus 222 ~~~~~--~gl~~~~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~-sg~a~aa~~~~~~~~~-~~~~~vv~i 297 (325)
..... .....+.....+.....+..+.|+|+|+++++++++++|||++||+ ||++++++.++++++. .++++||+|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~eGI~veP~ys~~a~agl~~l~~~~~i~~~~~Vv~i 321 (341)
T d1f2da_ 242 ANNTAKLIGVEHEFKDFTLDTRFAYPCYGVPNEGTIEAIRTCAEQEGVLTDPVYEGKSMQGLIALIKEDYFKPGANVLYV 321 (341)
T ss_dssp HHHHHHHHTCCCCCSCCCEECTTSTTBTTBCCHHHHHHHHHHHHHHSCCCCTTTHHHHHHHHHHHHHTTCSCTTCEEEEE
T ss_pred ccccccccccCCCccccccccccceeEEEEChHHHHHHHHHHHHHhCcccChhhhHHHHHHHHHHHHcCCCCCcCeEEEE
Confidence 00000 0111122233344566788899999999999999999999999995 8999999999988876 578999999
Q ss_pred eCCCCCCCcch
Q 020528 298 FPSFGERYLSS 308 (325)
Q Consensus 298 ~t~~g~~~~~~ 308 (325)
+|| |..++..
T Consensus 322 ~TG-G~~~~~~ 331 (341)
T d1f2da_ 322 HLG-GAPALSA 331 (341)
T ss_dssp ECC-CGGGGGG
T ss_pred ECC-CcccHHH
Confidence 976 6655543
|
| >d1vb3a1 c.79.1.1 (A:1-428) Threonine synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine synthase species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=1.3e-29 Score=235.96 Aligned_cols=274 Identities=14% Similarity=0.086 Sum_probs=203.5
Q ss_pred CCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHc-CCeE
Q 020528 18 KTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAK-GYRL 96 (325)
Q Consensus 18 ~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~-g~~~ 96 (325)
..|+.++. .++|+...+++||+|||||++..+...+...+. .+...|+++||||+|.|++.+++.. ++++
T Consensus 83 ~~p~~~~~-------~~~~~lELfhGPT~aFKD~a~~~~~~~~~~~~~--~~~~~Il~ATSGDTG~Aa~~a~~~~~~i~~ 153 (428)
T d1vb3a1 83 PAPVANVE-------SDVGCLELFHGPTLAFKDFGGRFMAQMLTHIAG--DKPVTILTATSGDTGAAVAHAFYGLPNVKV 153 (428)
T ss_dssp CCCEEEEE-------TTEEEEECCCSTTSBTHHHHHHHHHHHHHHHTT--TCCEEEEEECSSSHHHHHHHHTTTCTTEEE
T ss_pred Cccceecc-------CCceeeeeccCCCcccccchhhHHHHHHhhhcc--cccceeeecCCCCcchhHHHHHhCccccce
Confidence 46666554 369999999999999999999876554443322 2236799999999999999886655 6999
Q ss_pred EEEecCC-CCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCC-----CeEEeCCCCCCcch--HhHHhchHHHH
Q 020528 97 IITMPAS-MSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTP-----NSYVLQQFENPANP--KIHYETTGPEI 168 (325)
Q Consensus 97 ~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~n~~~~--~~g~~t~~~Ei 168 (325)
+|+.|.+ ++..+.++|..+|++|+.+..+.++|+|++.+++++.+.+ +...+ |+.|| +.+|.+.++|+
T Consensus 154 ~vl~P~g~vS~~Q~~Qmtt~g~nv~vi~V~G~fDDcq~lvk~~f~d~~~~~~~~l~s~----NSIN~~Rl~~Q~vyyf~a 229 (428)
T d1vb3a1 154 VILYPRGKISPLQEKLFCTLGGNIETVAIDGDFDACQALVKQAFDDEELKVALGLNSA----NSINISRLLAQICYYFEA 229 (428)
T ss_dssp EEEEETTCSCHHHHHHHHSCCTTEEEEEEESCHHHHHHHHHHGGGCHHHHHHHTEECC----STTSHHHHHHTTHHHHHH
T ss_pred EEEecCCCCcHHHHHHHhhccCCceEEecCCChhHHHHHHHHHhhhhhhhhcCCeeee----cccChhHHhhhHHHHHHH
Confidence 9999976 8888999999999988766555689999999999886531 12222 44443 67999999999
Q ss_pred HhhhCC---CCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcc---ccCCCCCCc-ccccCCCCC---Ccccc
Q 020528 169 WKGTGG---KIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV---LSGGKPGPH-KIQGIGAGF---IPGVL 238 (325)
Q Consensus 169 ~~ql~~---~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~---~~~~~~~~~-~~~gl~~~~---~~~~~ 238 (325)
..|+.. .++.|+||+|++|++.+.+.+.++..|--+++.....+... +..|...+. ....+++++ .|+++
T Consensus 230 ~~ql~~~~~~~~~~~VPtGNfGni~Ag~~Ak~mGLPi~~~i~AtN~Ndil~~f~~tG~y~~~~~~~TlSpAMDI~~pSNf 309 (428)
T d1vb3a1 230 VAQLPQETRNQLVVSVPSGNFGDLTAGLLAKSLGLPVKRFIAATNVNDTVPRFLHDGQWSPKATQATLSNAMDVSQPNNW 309 (428)
T ss_dssp HTTSCTTTTTSEEEEEECSSCHHHHHHHHHHHTTCCCSEEEEEECSCCHHHHHHHHSCCCCCCCCCCSSGGGCCSSCTTH
T ss_pred HHHhccccCCceEEeccHHHHHHHHHHHHhhhcCCceeeeecccccCccchhhhhCCceecccccccCchHhhhcccCCH
Confidence 999853 47789999999999999999999888888888777766532 123332221 123333322 35554
Q ss_pred cc----------ccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcch
Q 020528 239 DV----------NLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSS 308 (325)
Q Consensus 239 ~~----------~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~ 308 (325)
.+ ++......+.|+|....+.+.++++|+++||+||++++++.+.. .++...|++.|.++.|+.+.
T Consensus 310 ERl~~l~~~~~~~l~~~~~~~~dde~~~~i~~~~~~~gyi~DPHTAvg~~a~~~~~----~~~~~~V~LaTAHP~KF~d~ 385 (428)
T d1vb3a1 310 PRVEELFRRKIWQLKELGYAAVDDETTQQTMRELKELGYTSEPHAAVAYRALRDQL----NPGEYGLFLGTAHPAKFKES 385 (428)
T ss_dssp HHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTTC----CTTCEEEEEECBCGGGGHHH
T ss_pred HHHHHHHHhhhhhhcccceeeccHHHHHHHHHHHHHcCceeCCcHHHHHHHHHHhh----CCCCCEEEEECcCchhCHHH
Confidence 42 12233566777777888888889999999999999999986532 35678899999999998876
|
| >d1kl7a_ c.79.1.1 (A:) Threonine synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine synthase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.87 E-value=8.4e-21 Score=179.04 Aligned_cols=286 Identities=14% Similarity=0.070 Sum_probs=200.0
Q ss_pred CCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHH---HHHHh-C-CC---CCCCeEEEecCCChhHHHHHHHHH
Q 020528 19 TPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIA---DAEEK-G-LI---RPGESVLIEPTSGNTGIGLAFMAA 90 (325)
Q Consensus 19 TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~---~a~~~-g-~~---~~g~~~vv~~ssGN~g~alA~~a~ 90 (325)
+||.++. .....++|+-.-++.||.+|||-++..+.. +..++ + .+ +...-.|+++|||.+|.|.+.+++
T Consensus 96 ~pl~~~~---~~~~~~~~vlELfhGPT~aFKD~a~~~l~~~~~~~l~~~~~~~~~~~~~~~~il~aTSGDTG~Aa~~af~ 172 (511)
T d1kl7a_ 96 TPLVQNV---TGDKENLHILELFHGPTYAFKDVALQFVGNLFEYFLQRTNANLPEGEKKQITVVGATSGDTGSAAIYGLR 172 (511)
T ss_dssp SCEECCT---TCSSSCEEEEECCCSTTSBTHHHHHHHHHHHHHHHHHHHHTTSCSSSCCCEEEEEECSSSHHHHHHHHHT
T ss_pred Ccccccc---cCCCCceEEEeeccCCcccccCcchhhHHHHHHHHHHhcccccccccCceEEEEEecCCCccHHHHHHhc
Confidence 6666642 122347999999999999999988876543 33222 1 10 112358999999999999998876
Q ss_pred -HcCCeEEEEecCC-CCHHHHHHHHHcC-CEEEEeCCCCChhHHHHHHHHHHHhCC--CeEEeCCCCCCcchH--hHHhc
Q 020528 91 -AKGYRLIITMPAS-MSLERRMVLLAFG-AELVLTDPARGMKGAVQKAEEIRDKTP--NSYVLQQFENPANPK--IHYET 163 (325)
Q Consensus 91 -~~g~~~~i~~p~~-~~~~~~~~~~~~G-a~v~~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~n~~~~~--~g~~t 163 (325)
+.+++++|+.|.+ ++.-+.++|...+ -+|+.+....++|+|+..+++++.+.+ ..+.+.. -|..||. ..|..
T Consensus 173 ~~~~i~v~vlyP~~~vS~iQ~~Qmtt~~~~Nv~~i~v~G~fDDcq~~vk~~f~d~~~~~~~~l~s-~NSiNw~Rll~Qiv 251 (511)
T d1kl7a_ 173 GKKDVSVFILYPTGRISPIQEEQMTTVPDENVQTLSVTGTFDNCQDIVKAIFGDKEFNSKHNVGA-VNSINWARILAQMT 251 (511)
T ss_dssp TCTTEEEEEEEETTSSCHHHHHHHHHCCCTTEEEEEESSCHHHHHHHHHHHHHCSSCC--CCBCC-CCSCCHHHHHHHHH
T ss_pred CCCCceeEEeccCCCCchHHHHHHhhcCCceEEEEEeccChHHHHHHHHHHHhhhhhhccccccc-ccceeehhhhhhHH
Confidence 6799999999997 7887777777764 477776665689999999999998763 1122222 3666642 23333
Q ss_pred hHHHHHhhh----CCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcc---ccCCCCC-C-cccccCCCCC-
Q 020528 164 TGPEIWKGT----GGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV---LSGGKPG-P-HKIQGIGAGF- 233 (325)
Q Consensus 164 ~~~Ei~~ql----~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~---~~~~~~~-~-~~~~gl~~~~- 233 (325)
.+....-|+ .+++=.++||+|+.|++.+-+.+-++..|--|+|+...++... +..|... . ....++++++
T Consensus 252 yYf~ay~q~~~~~~~~~v~f~VPTGNfGni~Ag~~Ak~MGLPI~klivAtN~NdiL~rf~~tG~y~~~~~v~~T~SPSMD 331 (511)
T d1kl7a_ 252 YYFYSFFQATNGKDSKKVKFVVPSGNFGDILAGYFAKKMGLPIEKLAIATNENDILDRFLKSGLYERSDKVAATLSPAMD 331 (511)
T ss_dssp HHHHHHHHHHSSSSCCCEEEEEECSSSHHHHHHHHHHHHTCCCCCEEEEECSCCHHHHHHHHSEEECCSSCCCCSCGGGC
T ss_pred HHHHHHHHHhhhccCCeeEEEeccCcHHHHHHHHHHHhcCCChheEEEecCCcchHHHHhcCCCCCCcCcccCcCccHHh
Confidence 333333333 2344469999999999999888888777888999999888732 2233221 1 1223333332
Q ss_pred --Ccccccccc---------------------------------------------CCeEEEeCHHHHHHHHHHHHHHc-
Q 020528 234 --IPGVLDVNL---------------------------------------------LDETVQISSEEAIETAKLLALKE- 265 (325)
Q Consensus 234 --~~~~~~~~~---------------------------------------------~d~~~~v~d~e~~~a~~~l~~~~- 265 (325)
+|+++.+-+ .-....++|+|+.+.+++++++.
T Consensus 332 I~vsSNfERLL~~l~~~~~~~gd~~~~~~~v~~~M~~f~~~G~~~l~~~~l~~l~~~F~s~svsD~et~~tIk~vye~~~ 411 (511)
T d1kl7a_ 332 ILISSNFERLLWYLAREYLANGDDLKAGEIVNNWFQELKTNGKFQVDKSIIEGASKDFTSERVSNEETSETIKKIYESSV 411 (511)
T ss_dssp CSSCTTHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHSEEECCHHHHHHHTTTEEEEECCHHHHHHHHHHHHHHCC
T ss_pred hhhhHHHHHHHHHHhcchhcccchhhhHHHHHHHHHHHHhcCCccccchhhhccccceeEEEeCHHHHHHHHHHHHHhcC
Confidence 355443211 01267899999999999999987
Q ss_pred ---CCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcch
Q 020528 266 ---GLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSS 308 (325)
Q Consensus 266 ---gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~ 308 (325)
|++++|+||.++.++.++..+...++...|++.|.+..|+.++
T Consensus 412 n~~gYllDPHTAVG~~aa~k~~~~~~~~~~p~VvLATAHPaKFpda 457 (511)
T d1kl7a_ 412 NPKHYILDPHTAVGVCATERLIAKDNDKSIQYISLSTAHPAKFADA 457 (511)
T ss_dssp SSTTCCCCHHHHHHHHHHHHHHHHHCCTTSEEEEEECBCGGGGHHH
T ss_pred ccCCeEECCcHHHHHHHHHHHHHhccCCCCcEEEEeCcChhhhHHH
Confidence 9999999999999999876554345567899999999999886
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=95.60 E-value=0.039 Score=43.14 Aligned_cols=60 Identities=23% Similarity=0.299 Sum_probs=50.4
Q ss_pred HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 020528 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 124 (325)
+.+.+++|++.+|.+.+|.-|.++...|+..|.+++.+.. +..|.+.++.+|++.++...
T Consensus 23 ~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~---~~~~~~~~~~~Ga~~vi~~~ 82 (182)
T d1v3va2 23 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKIAYLKQIGFDAAFNYK 82 (182)
T ss_dssp TTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEEEETT
T ss_pred HHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCC---CHHHHHHHHhhhhhhhcccc
Confidence 4566788889999999999999999999999999887764 46789999999998766543
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=95.52 E-value=0.31 Score=37.05 Aligned_cols=112 Identities=19% Similarity=0.135 Sum_probs=69.3
Q ss_pred HHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHH
Q 020528 59 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEI 138 (325)
Q Consensus 59 ~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~ 138 (325)
++.++..+++|.+.+|. ++|.-|...+..++.+|.+++++- ..+.|++..+.+|++...+..... ++.
T Consensus 17 ~a~~~~~~~~g~~vlV~-G~G~vG~~~~~~ak~~Ga~vi~v~---~~~~r~~~a~~~ga~~~~~~~~~~-~~~------- 84 (170)
T d1e3ja2 17 HACRRAGVQLGTTVLVI-GAGPIGLVSVLAAKAYGAFVVCTA---RSPRRLEVAKNCGADVTLVVDPAK-EEE------- 84 (170)
T ss_dssp HHHHHHTCCTTCEEEEE-CCSHHHHHHHHHHHHTTCEEEEEE---SCHHHHHHHHHTTCSEEEECCTTT-SCH-------
T ss_pred HHHHHhCCCCCCEEEEE-cccccchhhHhhHhhhcccccccc---hHHHHHHHHHHcCCcEEEeccccc-ccc-------
Confidence 34455557888776665 688999999999999998766553 468888888999986655432100 000
Q ss_pred HHhCCCeEEeCCCCCCcchHhHHhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEE
Q 020528 139 RDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGV 208 (325)
Q Consensus 139 ~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV 208 (325)
...-.++.+..+..+|.+|-++|+..+ +-.+++...+.-+++-+
T Consensus 85 -----------------------~~~~~~~~~~~g~g~D~vid~~g~~~~---~~~a~~~~~~~G~iv~~ 128 (170)
T d1e3ja2 85 -----------------------SSIIERIRSAIGDLPNVTIDCSGNEKC---ITIGINITRTGGTLMLV 128 (170)
T ss_dssp -----------------------HHHHHHHHHHSSSCCSEEEECSCCHHH---HHHHHHHSCTTCEEEEC
T ss_pred -----------------------chhhhhhhcccccCCceeeecCCChHH---HHHHHHHHhcCCceEEE
Confidence 011112222223468988888877544 34455666666666554
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=95.51 E-value=0.019 Score=38.47 Aligned_cols=58 Identities=17% Similarity=0.297 Sum_probs=46.0
Q ss_pred HHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCC
Q 020528 57 IADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGA 117 (325)
Q Consensus 57 ~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga 117 (325)
+....+.+...++.+.+|...+|.-|......|+.+|.+++.... +++|.+.++.+||
T Consensus 20 l~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~---s~~k~~~~~~lGA 77 (77)
T d1o8ca2 20 VMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSG---RESTHEYLKSLGA 77 (77)
T ss_dssp HHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEES---CGGGHHHHHHHTE
T ss_pred HHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEEC---CHHHHHHHHHCCC
Confidence 334556677777878899999999999999999999999887765 4567788888875
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=95.31 E-value=0.044 Score=42.52 Aligned_cols=58 Identities=28% Similarity=0.319 Sum_probs=46.4
Q ss_pred HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q 020528 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 122 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~ 122 (325)
+.+.++||.+.+|.+.+|.-|.++...|+..|.++++... ++.|++.++.+||+.++-
T Consensus 22 ~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~---s~~k~~~~~~lGa~~vi~ 79 (179)
T d1qora2 22 KTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVG---TAQKAQSALKAGAWQVIN 79 (179)
T ss_dssp TTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEES---SHHHHHHHHHHTCSEEEE
T ss_pred HHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeeccc---chHHHHHHHhcCCeEEEE
Confidence 4567889988888888899999999999999988776644 577788888888875443
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.99 E-value=0.1 Score=39.82 Aligned_cols=61 Identities=21% Similarity=0.235 Sum_probs=45.1
Q ss_pred HHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 020528 59 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 123 (325)
Q Consensus 59 ~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 123 (325)
++.++..+++|.+.+| .+.|.-|...+..++.+|.+++++ +..+.|++..+.+||+.....
T Consensus 18 ~al~~~~~~~g~~VlV-~GaG~vG~~~~~~ak~~G~~Vi~~---~~~~~~~~~a~~~Ga~~~i~~ 78 (166)
T d1llua2 18 KGLKQTNARPGQWVAI-SGIGGLGHVAVQYARAMGLHVAAI---DIDDAKLELARKLGASLTVNA 78 (166)
T ss_dssp HHHHHHTCCTTCEEEE-ECCSHHHHHHHHHHHHTTCEEEEE---ESCHHHHHHHHHTTCSEEEET
T ss_pred HHHHHhCCCCCCEEEE-eeccccHHHHHHHHHHcCCcccee---cchhhHHHhhhccCccccccc
Confidence 3444455678866556 567999999999999999876655 346888899999999665543
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.60 E-value=0.17 Score=38.74 Aligned_cols=64 Identities=27% Similarity=0.324 Sum_probs=47.8
Q ss_pred HHHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 020528 58 ADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 58 ~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 124 (325)
.++.++..+++|.+.+| .+.|.-|...+..++.+|.+-++++. ..+.|++..+.+||+.+....
T Consensus 16 ~~a~~~~~~~~gd~VlI-~G~G~iG~~~~~~a~~~G~~~Vi~~d--~~~~rl~~a~~~Ga~~~~~~~ 79 (171)
T d1pl8a2 16 IHACRRGGVTLGHKVLV-CGAGPIGMVTLLVAKAMGAAQVVVTD--LSATRLSKAKEIGADLVLQIS 79 (171)
T ss_dssp HHHHHHHTCCTTCEEEE-ECCSHHHHHHHHHHHHTTCSEEEEEE--SCHHHHHHHHHTTCSEEEECS
T ss_pred HHHHHHhCCCCCCEEEE-ECCCccHHHHHHHHHHcCCceEEecc--CCHHHHHHHHHhCCccccccc
Confidence 35556666788866555 56799999999999999986555554 358888889999997666553
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.46 E-value=0.2 Score=38.21 Aligned_cols=63 Identities=22% Similarity=0.216 Sum_probs=47.5
Q ss_pred HHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 020528 59 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 123 (325)
Q Consensus 59 ~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 123 (325)
++.++..+++|.+.+|...+|..|..++..++..|...++++.. ++.|++.++.+|++.+...
T Consensus 18 ~al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~--~~~~~~~~~~~Ga~~~i~~ 80 (170)
T d1jvba2 18 RAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDV--REEAVEAAKRAGADYVINA 80 (170)
T ss_dssp HHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEES--SHHHHHHHHHHTCSEEEET
T ss_pred HHHHHhCCCCCCEEEEEeccccceeeeeeccccccccccccccc--chhhHHHHHHcCCceeecc
Confidence 44555667888777777767999999999999999866666554 4778888899998654443
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.45 E-value=0.15 Score=39.22 Aligned_cols=57 Identities=30% Similarity=0.457 Sum_probs=45.5
Q ss_pred HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 020528 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 121 (325)
+.+.+++|.+.+|...+|..|.+....|+.+|.++++.+. ++.|.+.++.+|++-++
T Consensus 22 ~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~---~~~~~~~~~~~Ga~~vi 78 (174)
T d1yb5a2 22 HSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAG---TEEGQKIVLQNGAHEVF 78 (174)
T ss_dssp TTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEEE
T ss_pred HHhCCCCCCEEEEEeccccccccccccccccCcccccccc---cccccccccccCccccc
Confidence 4567788888788777799999999999999999777764 46788888999985443
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.19 E-value=0.26 Score=37.31 Aligned_cols=58 Identities=26% Similarity=0.272 Sum_probs=44.1
Q ss_pred hCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 020528 63 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 63 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 124 (325)
+..+++|.+.+|. .+|.-|...+..++..|.+++++ +.++.|++.++.+|++.+....
T Consensus 22 ~~~~~~g~~vlv~-G~G~iG~~a~~~a~~~g~~v~~~---~~~~~r~~~~k~~Ga~~~~~~~ 79 (168)
T d1rjwa2 22 VTGAKPGEWVAIY-GIGGLGHVAVQYAKAMGLNVVAV---DIGDEKLELAKELGADLVVNPL 79 (168)
T ss_dssp HHTCCTTCEEEEE-CCSTTHHHHHHHHHHTTCEEEEE---CSCHHHHHHHHHTTCSEEECTT
T ss_pred HhCCCCCCEEEEe-ecccchhhhhHHHhcCCCeEecc---CCCHHHhhhhhhcCcceecccc
Confidence 3346788666665 67889999999999999986555 3468889999999997766554
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=93.99 E-value=0.087 Score=40.66 Aligned_cols=61 Identities=31% Similarity=0.424 Sum_probs=46.4
Q ss_pred HHHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 020528 58 ADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (325)
Q Consensus 58 ~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 121 (325)
.++.+++.+++|.+.+|.+.+|.-|.+....|+..|.+++++.. ++.|.+.++.+|++.+.
T Consensus 17 ~~al~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~---~~~~~~~~~~lGa~~~i 77 (171)
T d1iz0a2 17 YLALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAAS---RPEKLALPLALGAEEAA 77 (171)
T ss_dssp HHHHHHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEES---SGGGSHHHHHTTCSEEE
T ss_pred HHHHHHhCCCCCCEEEEEeccccchhhhhhhhcccccccccccc---cccccccccccccceee
Confidence 34455677889988777777899999999999999998776654 34577788889986543
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.94 E-value=0.24 Score=38.15 Aligned_cols=58 Identities=34% Similarity=0.483 Sum_probs=46.2
Q ss_pred HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q 020528 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 122 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~ 122 (325)
+.+.+++|.+.+|.+.+|..|..+.-.|+.+|.+.++.+. +..|.+.++.+|++.+..
T Consensus 19 ~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~---~~~~~~~l~~~Ga~~vi~ 76 (183)
T d1pqwa_ 19 EVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAG---SDAKREMLSRLGVEYVGD 76 (183)
T ss_dssp TTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEES---SHHHHHHHHTTCCSEEEE
T ss_pred HHhCCCCCCEEEEECCCCCcccccchhhccccccceeeec---cccccccccccccccccc
Confidence 5567888878788787899999999999999998887764 456788888888865443
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=93.80 E-value=0.4 Score=37.61 Aligned_cols=63 Identities=21% Similarity=0.200 Sum_probs=48.2
Q ss_pred HHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 020528 59 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 59 ~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 124 (325)
++.++..+++|.+.+| .+.|.-|...+..++.+|...++++.. ++.|++..+.+|++.+....
T Consensus 16 ~a~~~a~v~~G~tVlV-~GaG~vGl~a~~~ak~~ga~~Vi~~d~--~~~rl~~a~~~Ga~~~~~~~ 78 (195)
T d1kola2 16 HGAVTAGVGPGSTVYV-AGAGPVGLAAAASARLLGAAVVIVGDL--NPARLAHAKAQGFEIADLSL 78 (195)
T ss_dssp HHHHHTTCCTTCEEEE-ECCSHHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHHTTCEEEETTS
T ss_pred HHHHHhCCCCCCEEEE-ECcCHHHHHHHHHHHhhcccceeeecc--cchhhHhhhhccccEEEeCC
Confidence 4455667789866555 567888988888899999876666643 58899999999998866553
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=93.68 E-value=0.31 Score=37.57 Aligned_cols=62 Identities=26% Similarity=0.260 Sum_probs=44.6
Q ss_pred HHH-HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 020528 59 DAE-EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 123 (325)
Q Consensus 59 ~a~-~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 123 (325)
++. +.+.+++|.+.+|. ++|..|......++.+|.+-++++. .++.|++.++.+||+.+...
T Consensus 18 ~al~~~~~~~~G~~VlV~-GaG~iG~~~~~~ak~~Ga~~Vi~~~--~~~~~~~~a~~lGa~~vi~~ 80 (182)
T d1vj0a2 18 HAFDEYPESFAGKTVVIQ-GAGPLGLFGVVIARSLGAENVIVIA--GSPNRLKLAEEIGADLTLNR 80 (182)
T ss_dssp HHHHTCSSCCBTCEEEEE-CCSHHHHHHHHHHHHTTBSEEEEEE--SCHHHHHHHHHTTCSEEEET
T ss_pred HHHHHHhCCCCCCEEEEE-CCCccchhheecccccccccccccc--cccccccccccccceEEEec
Confidence 444 45677888666665 5688999999999999985444433 26788888899998655544
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=93.57 E-value=0.042 Score=43.32 Aligned_cols=62 Identities=18% Similarity=0.171 Sum_probs=48.8
Q ss_pred HhCCCCCCCeEEEe-cCCChhHHHHHHHHHHcCCeEEEEecCCC-CHHHHHHHHHcCCEEEEeC
Q 020528 62 EKGLIRPGESVLIE-PTSGNTGIGLAFMAAAKGYRLIITMPASM-SLERRMVLLAFGAELVLTD 123 (325)
Q Consensus 62 ~~g~~~~g~~~vv~-~ssGN~g~alA~~a~~~g~~~~i~~p~~~-~~~~~~~~~~~Ga~v~~~~ 123 (325)
+.+.++||.+.+|. +.+|..|.+....|+.+|.++++++.... ...+...++.+||+.++..
T Consensus 22 ~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~ 85 (189)
T d1gu7a2 22 HYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITE 85 (189)
T ss_dssp SSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEH
T ss_pred HHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEec
Confidence 34677888777774 67788999999999999999998887653 4567788899999776653
|
| >d1vp8a_ c.49.1.2 (A:) Hypothetical protein AF0103 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Pyruvate kinase C-terminal domain-like superfamily: PK C-terminal domain-like family: MTH1675-like domain: Hypothetical protein AF0103 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=93.32 E-value=0.31 Score=37.58 Aligned_cols=77 Identities=19% Similarity=0.262 Sum_probs=58.5
Q ss_pred CCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecC---------CCCHHHHHHH
Q 020528 42 MEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA---------SMSLERRMVL 112 (325)
Q Consensus 42 ~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~---------~~~~~~~~~~ 112 (325)
.+|.-.+-+..+...+.+|.+.|. .+.||..++|.++..++-+. .|++++++.-. ..+++..+.+
T Consensus 10 ~~~G~~NT~~~l~~a~~rA~Elgi----~~iVvAStsG~TA~~~~e~~--~g~~lvvVth~~GF~~pg~~e~~~e~~~~L 83 (190)
T d1vp8a_ 10 NKPGRENTEETLRLAVERAKELGI----KHLVVASSYGDTAMKALEMA--EGLEVVVVTYHTGFVREGENTMPPEVEEEL 83 (190)
T ss_dssp SSCSGGGHHHHHHHHHHHHHHHTC----CEEEEECSSSHHHHHHHHHC--TTCEEEEEECCTTSSSTTCCSSCHHHHHHH
T ss_pred cCCCcccHHHHHHHHHHHHHHcCC----CeEEEEeCCcHHHHHHHHHh--cCCeEEEEecccCCCCCCcccCCHHHHHHH
Confidence 355666777788888899999996 35556666699998777665 38898877642 2689999999
Q ss_pred HHcCCEEEEeCC
Q 020528 113 LAFGAELVLTDP 124 (325)
Q Consensus 113 ~~~Ga~v~~~~~ 124 (325)
+..|.+|..-..
T Consensus 84 ~~~G~~V~t~tH 95 (190)
T d1vp8a_ 84 RKRGAKIVRQSH 95 (190)
T ss_dssp HHTTCEEEECCC
T ss_pred HHcCCEEEEecc
Confidence 999999977653
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=92.74 E-value=0.32 Score=37.37 Aligned_cols=59 Identities=22% Similarity=0.131 Sum_probs=44.4
Q ss_pred HHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 020528 59 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120 (325)
Q Consensus 59 ~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 120 (325)
++.+...+++|.+.+| .+.|--|...+..|+.+|.+-++.+.. .+.|++..+.+||+-.
T Consensus 18 ~a~~~a~~~~g~~VlI-~GaG~vGl~~~q~ak~~Ga~~Vi~~d~--~~~r~~~a~~lGa~~~ 76 (174)
T d1jqba2 18 HGAELADIEMGSSVVV-IGIGAVGLMGIAGAKLRGAGRIIGVGS--RPICVEAAKFYGATDI 76 (174)
T ss_dssp HHHHHTTCCTTCCEEE-ECCSHHHHHHHHHHHTTTCSCEEEECC--CHHHHHHHHHHTCSEE
T ss_pred HHHHHhCCCCCCEEEE-EcCCcchhhhhhhhhcccccccccccc--hhhhHHHHHhhCcccc
Confidence 4566777889877666 567889999999999999865555443 5788888888888543
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=92.62 E-value=0.17 Score=39.28 Aligned_cols=60 Identities=20% Similarity=0.306 Sum_probs=46.3
Q ss_pred HHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q 020528 60 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 122 (325)
Q Consensus 60 a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~ 122 (325)
..+.|....+...+|.+.+|.-|.+....|+.+|.+++.+.. ++.|.+.++.+||+.+..
T Consensus 23 l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~---~~~k~~~~~~lGad~vi~ 82 (177)
T d1o89a2 23 LEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSG---RESTHEYLKSLGASRVLP 82 (177)
T ss_dssp HHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEES---CGGGHHHHHHHTEEEEEE
T ss_pred HHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEec---chhHHHHHHhhccccccc
Confidence 445565444447888888899999999999999999888766 456677788899987654
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=92.31 E-value=0.12 Score=39.71 Aligned_cols=62 Identities=26% Similarity=0.329 Sum_probs=48.4
Q ss_pred HHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 020528 57 IADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (325)
Q Consensus 57 ~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 121 (325)
+....+.|...++.+.+|.+.+|--|.+..-.|+.+|.+++..+.. ..|.+.++.+|++.+.
T Consensus 12 ~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s---~~k~~~~~~lGad~vi 73 (167)
T d1tt7a2 12 VHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGN---REAADYLKQLGASEVI 73 (167)
T ss_dssp HHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESS---SSTHHHHHHHTCSEEE
T ss_pred HHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecC---HHHHHHHHhhcccceE
Confidence 3445667776666678888888999999999999999998887664 4567778889998754
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.64 E-value=0.21 Score=38.77 Aligned_cols=62 Identities=27% Similarity=0.331 Sum_probs=49.2
Q ss_pred HHHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q 020528 58 ADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 122 (325)
Q Consensus 58 ~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~ 122 (325)
....+.|...+|.+.+|.+.+|.-|.+.--.|+.+|.+++..... +.|.+.++.+||+.+..
T Consensus 21 ~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s---~~k~~~~~~lGa~~vi~ 82 (176)
T d1xa0a2 21 HRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGK---AAEHDYLRVLGAKEVLA 82 (176)
T ss_dssp HHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESC---TTCHHHHHHTTCSEEEE
T ss_pred HHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCc---hHHHHHHHhcccceeee
Confidence 444567887778889999999999999888899999999887653 45677788899987654
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=91.07 E-value=0.61 Score=35.59 Aligned_cols=56 Identities=20% Similarity=0.211 Sum_probs=43.4
Q ss_pred HHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020528 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119 (325)
Q Consensus 61 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 119 (325)
.+.+.++||.+.+| .+.|--|.+.+..|+.+|.+.++++.. ++.|++..+.+|+.-
T Consensus 21 ~~~~~~~~g~~VlI-~G~G~iG~~~~~~ak~~g~~~v~~~~~--~~~k~~~a~~~Ga~~ 76 (174)
T d1f8fa2 21 INALKVTPASSFVT-WGAGAVGLSALLAAKVCGASIIIAVDI--VESRLELAKQLGATH 76 (174)
T ss_dssp HTTTCCCTTCEEEE-ESCSHHHHHHHHHHHHHTCSEEEEEES--CHHHHHHHHHHTCSE
T ss_pred HHhhCCCCCCEEEE-eCCCHHHhhhhhcccccccceeeeecc--HHHHHHHHHHcCCeE
Confidence 45566788867665 566889999999999999987777653 578888888888743
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.74 E-value=0.44 Score=36.92 Aligned_cols=61 Identities=13% Similarity=0.229 Sum_probs=42.7
Q ss_pred hCCCCCC--CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 020528 63 KGLIRPG--ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 63 ~g~~~~g--~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 124 (325)
.+.+++| .+.+|.+.+|.-|..+...|+.+|.+.++.+... +..+....+.+|++.+.-..
T Consensus 23 ~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~-~e~~~~l~~~~gad~vi~~~ 85 (187)
T d1vj1a2 23 KGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGT-QEKCLFLTSELGFDAAVNYK 85 (187)
T ss_dssp HSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESS-HHHHHHHHHHSCCSEEEETT
T ss_pred HhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccch-HHHHhhhhhcccceEEeecc
Confidence 3555665 4677777789999999999999999877665442 34444455678887766543
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.48 E-value=0.49 Score=35.88 Aligned_cols=58 Identities=21% Similarity=0.196 Sum_probs=41.8
Q ss_pred HHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 020528 59 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120 (325)
Q Consensus 59 ~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 120 (325)
++.++..+++|.+.+| .+.|..|...+..++.+|.+++++-. ++.|++..+.+||+-.
T Consensus 18 ~al~~~~~~~g~~vlI-~GaG~vG~~a~q~ak~~G~~vi~~~~---~~~k~~~a~~lGa~~~ 75 (168)
T d1piwa2 18 SPLVRNGCGPGKKVGI-VGLGGIGSMGTLISKAMGAETYVISR---SSRKREDAMKMGADHY 75 (168)
T ss_dssp HHHHHTTCSTTCEEEE-ECCSHHHHHHHHHHHHHTCEEEEEES---SSTTHHHHHHHTCSEE
T ss_pred HHHHHhCcCCCCEEEE-ECCCCcchhHHHHhhhcccccccccc---chhHHHHhhccCCcEE
Confidence 4555556788877666 45689999999999999998666533 3446777888888543
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=90.29 E-value=0.48 Score=35.93 Aligned_cols=61 Identities=23% Similarity=0.181 Sum_probs=44.4
Q ss_pred HHHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q 020528 58 ADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 122 (325)
Q Consensus 58 ~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~ 122 (325)
..+.++..+++|.+.+|. +.|.-|...+..++.+|.+.+++.. +..+++.++.+|++....
T Consensus 20 y~al~~~~~~~G~~VlI~-GaG~vG~~a~qlak~~Ga~~i~~~~---~~~~~~~a~~lGad~~i~ 80 (168)
T d1uufa2 20 YSPLRHWQAGPGKKVGVV-GIGGLGHMGIKLAHAMGAHVVAFTT---SEAKREAAKALGADEVVN 80 (168)
T ss_dssp HHHHHHTTCCTTCEEEEE-CCSHHHHHHHHHHHHTTCEEEEEES---SGGGHHHHHHHTCSEEEE
T ss_pred HHHHHHhCCCCCCEEEEe-ccchHHHHHHHHhhcccccchhhcc---chhHHHHHhccCCcEEEE
Confidence 345566778899776665 5688999999999999988876543 344667778888865543
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=89.44 E-value=1.7 Score=35.81 Aligned_cols=54 Identities=11% Similarity=0.134 Sum_probs=35.1
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCC--CHHHHHHHHHcCCEEEEeC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM--SLERRMVLLAFGAELVLTD 123 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~--~~~~~~~~~~~Ga~v~~~~ 123 (325)
+..||+.+++.-|.++|..-.+.|.++++.-.... .....+.....|.+++.+.
T Consensus 26 K~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~ 81 (294)
T d1w6ua_ 26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQ 81 (294)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEE
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcCCceEEEE
Confidence 47899999999999999988888888776644321 1112223345566655543
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=88.85 E-value=2.2 Score=34.37 Aligned_cols=73 Identities=18% Similarity=0.229 Sum_probs=43.8
Q ss_pred CCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCC--CHHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHHHHHh
Q 020528 69 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM--SLERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRDK 141 (325)
Q Consensus 69 g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~--~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 141 (325)
|+..|||.+++.-|.++|....+.|.++++.-.... .....+..+.+|.+++.+..+ .+.++..+...+..++
T Consensus 5 gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (251)
T d1vl8a_ 5 GRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEK 80 (251)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 347889999999999999999999988666543211 111223345667776655432 2333444444444443
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=87.79 E-value=2.2 Score=32.01 Aligned_cols=55 Identities=20% Similarity=0.208 Sum_probs=40.6
Q ss_pred CCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q 020528 65 LIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 122 (325)
Q Consensus 65 ~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~ 122 (325)
.++||...+| .+.|.-|...+..++.+|...++++.. ++.|++.++.+|++.+..
T Consensus 29 ~~~~g~~vli-~GaG~vG~~~~~~a~~~g~~~vv~~~~--~~~k~~~~~~~ga~~~i~ 83 (172)
T d1h2ba2 29 TLYPGAYVAI-VGVGGLGHIAVQLLKVMTPATVIALDV--KEEKLKLAERLGADHVVD 83 (172)
T ss_dssp TCCTTCEEEE-ECCSHHHHHHHHHHHHHCCCEEEEEES--SHHHHHHHHHTTCSEEEE
T ss_pred ccCCCCEEEE-eCCChHHHHHHHHHHhhcCcccccccc--hhHHHHHHhhcccceeec
Confidence 3567755444 667999999989999999877666544 468889999999865443
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=86.71 E-value=1.6 Score=35.33 Aligned_cols=74 Identities=18% Similarity=0.176 Sum_probs=53.5
Q ss_pred CCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHHHHHhC
Q 020528 69 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS--LERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRDKT 142 (325)
Q Consensus 69 g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~~ 142 (325)
|+..||+.+++--|.++|....+.|.++++....+.. ......++.+|.+++.+..+ .+.++..+...+..++.
T Consensus 6 GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~ 82 (259)
T d1ja9a_ 6 GKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHF 82 (259)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHHc
Confidence 4578899999999999999999999999877665432 33466788899988877543 23455555555555554
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=86.68 E-value=1.8 Score=34.85 Aligned_cols=59 Identities=24% Similarity=0.238 Sum_probs=45.5
Q ss_pred CCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCC-----CCHHHHHHHHHcCCEEEEeCC
Q 020528 66 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS-----MSLERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 66 ~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~-----~~~~~~~~~~~~Ga~v~~~~~ 124 (325)
.+|+.+.||+..+|--|.++|..-.+.|.+.++++.++ .....++.++..|+++..+.-
T Consensus 6 ~~p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~ 69 (259)
T d2fr1a1 6 WKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAAC 69 (259)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEEC
T ss_pred cCCcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhcccccccccc
Confidence 46777889999999999999999889998766665432 234556778899999887754
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.59 E-value=3.7 Score=33.04 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=25.5
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEe
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITM 100 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~ 100 (325)
+..||+..++--|.++|....+.|.++++.-
T Consensus 11 Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~ 41 (257)
T d1xg5a_ 11 RLALVTGASGGIGAAVARALVQQGLKVVGCA 41 (257)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEE
Confidence 4688898888899999999888998866554
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=86.23 E-value=5.1 Score=32.16 Aligned_cols=74 Identities=12% Similarity=0.204 Sum_probs=45.4
Q ss_pred CCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC---HHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHHHHHhC
Q 020528 69 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS---LERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRDKT 142 (325)
Q Consensus 69 g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~---~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~~ 142 (325)
|+..||+.+++.-|.++|....+.|.++++.-..+.. ..+.......|.+++.+..+ .+.++..+...+..++.
T Consensus 4 gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 81 (260)
T d1x1ta1 4 GKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM 81 (260)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 3477898888889999999999999986665443211 11122234567788776543 23344444444444443
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=85.43 E-value=6.1 Score=31.71 Aligned_cols=55 Identities=13% Similarity=-0.014 Sum_probs=34.6
Q ss_pred CCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCC-CHHHHHHHHHcCCEEEEeC
Q 020528 69 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM-SLERRMVLLAFGAELVLTD 123 (325)
Q Consensus 69 g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~-~~~~~~~~~~~Ga~v~~~~ 123 (325)
|+..|||.+++.-|.++|....+.|.++++.-.... -......++..+.+++.+.
T Consensus 8 gK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~ 63 (259)
T d1xq1a_ 8 AKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSV 63 (259)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEe
Confidence 457889999998999999888888887665533211 1122334455555555443
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=84.95 E-value=0.76 Score=32.48 Aligned_cols=37 Identities=22% Similarity=0.265 Sum_probs=31.7
Q ss_pred CCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCC
Q 020528 67 RPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS 103 (325)
Q Consensus 67 ~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~ 103 (325)
.|+.++|-.-++|..|+-+|.+|+++|++++++-|..
T Consensus 8 ~~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~ 44 (111)
T d1kjqa2 8 RPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYA 44 (111)
T ss_dssp STTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESST
T ss_pred CCCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 3455667888899999999999999999999988764
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=84.72 E-value=0.45 Score=31.45 Aligned_cols=49 Identities=10% Similarity=0.029 Sum_probs=36.7
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 124 (325)
++|..-++|..|+-++.+|+.+|++++++-|...++.. ..-.+++.++-
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~pa~-----~~a~dvIT~e~ 50 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPAAV-----PFQQSVITAEI 50 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCGGGS-----CGGGSEEEESS
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCCccc-----ccccceEEEee
Confidence 46777899999999999999999999999987543321 11236666654
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=84.60 E-value=1.2 Score=33.99 Aligned_cols=58 Identities=21% Similarity=0.212 Sum_probs=44.4
Q ss_pred HHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 020528 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (325)
Q Consensus 61 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 121 (325)
.+...+++|.+.+| .+.|--|...+..++.+|.+.+++... ++.|++..+.+|++.+.
T Consensus 21 ~~~a~v~~G~~VlV-~G~G~iGl~a~~~ak~~Ga~~Vi~~d~--~~~r~~~a~~~Ga~~~i 78 (174)
T d1e3ia2 21 INTAKVTPGSTCAV-FGLGCVGLSAIIGCKIAGASRIIAIDI--NGEKFPKAKALGATDCL 78 (174)
T ss_dssp HTTSCCCTTCEEEE-ECCSHHHHHHHHHHHHTTCSEEEEECS--CGGGHHHHHHTTCSEEE
T ss_pred HHhhCCCCCCEEEE-ECCChHHHHHHHHHHHhCCceeeeecc--chHHHHHHHHhCCCccc
Confidence 45677889866555 578999999999999999877776654 45678888888886544
|
| >d1t57a_ c.49.1.2 (A:) Hypothetical protein MTH1675 {Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Pyruvate kinase C-terminal domain-like superfamily: PK C-terminal domain-like family: MTH1675-like domain: Hypothetical protein MTH1675 species: Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=84.11 E-value=1.5 Score=33.53 Aligned_cols=76 Identities=20% Similarity=0.246 Sum_probs=53.2
Q ss_pred CCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecC---------CCCHHHHHHH
Q 020528 42 MEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA---------SMSLERRMVL 112 (325)
Q Consensus 42 ~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~---------~~~~~~~~~~ 112 (325)
.+|.-.+-+..+...+++|.+.|. ++.||..++|.++..++-+. .-+++++.-. ..+++..+.+
T Consensus 9 ~~~G~~NT~~~l~~a~~ra~elgi----~~iVvAStsG~TA~~~~e~~---~~~lvvVth~~GF~~pg~~e~~~e~~~~L 81 (186)
T d1t57a_ 9 EEPGKENTERVLELVGERADQLGI----RNFVVASVSGETALRLSEMV---EGNIVSVTHHAGFREKGQLELEDEARDAL 81 (186)
T ss_dssp SSCSGGGHHHHHHHHHHHHHHHTC----CEEEEECSSSHHHHHHHTTC---CSEEEEECCCTTSSSTTCCSSCHHHHHHH
T ss_pred cCCCcccHHHHHHHHHHHHHHcCC----CeEEEEeCCcHHHHHHHHhc---CCCEEEEecccCCCCCCCCccCHHHHHHH
Confidence 345666777788888899999996 25555566698886664433 3365555421 2578999999
Q ss_pred HHcCCEEEEeCC
Q 020528 113 LAFGAELVLTDP 124 (325)
Q Consensus 113 ~~~Ga~v~~~~~ 124 (325)
+..|.+|..-..
T Consensus 82 ~~~G~~V~t~tH 93 (186)
T d1t57a_ 82 LERGVNVYAGSH 93 (186)
T ss_dssp HHHTCEEECCSC
T ss_pred HHcCCEEEEecc
Confidence 999999977654
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=84.09 E-value=4 Score=32.82 Aligned_cols=52 Identities=10% Similarity=0.236 Sum_probs=33.1
Q ss_pred CCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHH-HHHHcCCEEEEeC
Q 020528 69 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRM-VLLAFGAELVLTD 123 (325)
Q Consensus 69 g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~-~~~~~Ga~v~~~~ 123 (325)
|+..||+.+++--|.++|......|.++++. .. +..+++ ..+.+|.+.+.+.
T Consensus 6 gK~alITGas~GIG~aia~~la~~Ga~V~~~-~~--~~~~~~~~~~~~~~~~~~~~ 58 (253)
T d1hxha_ 6 GKVALVTGGASGVGLEVVKLLLGEGAKVAFS-DI--NEAAGQQLAAELGERSMFVR 58 (253)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEE-CS--CHHHHHHHHHHHCTTEEEEC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEE-EC--CHHHHHHHHHHhCCCeEEEE
Confidence 3478888888889999998888888875544 22 233322 3344565555544
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=82.93 E-value=1.6 Score=33.14 Aligned_cols=58 Identities=19% Similarity=0.316 Sum_probs=41.0
Q ss_pred HHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 020528 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (325)
Q Consensus 61 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 121 (325)
.+.+.+++|.+ |+..+.|--|......|+.+|..-+|.+.. ++.|++..+.+||+..+
T Consensus 22 ~~~~~~~~g~t-VlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~--~~~kl~~Ak~~GA~~~i 79 (176)
T d1d1ta2 22 VKTGKVKPGST-CVVFGLGGVGLSVIMGCKSAGASRIIGIDL--NKDKFEKAMAVGATECI 79 (176)
T ss_dssp HTTSCCCTTCE-EEEECCSHHHHHHHHHHHHTTCSEEEEECS--CGGGHHHHHHHTCSEEE
T ss_pred HHhhCCCCCCE-EEEECCCchhHHHHHHHHHcCCceEEEecC--cHHHHHHHHhcCCcEEE
Confidence 35566788855 455567889999988999999765555543 46677777778875544
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=82.24 E-value=8.5 Score=30.69 Aligned_cols=43 Identities=7% Similarity=0.107 Sum_probs=32.6
Q ss_pred CCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHH
Q 020528 69 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMV 111 (325)
Q Consensus 69 g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~ 111 (325)
|+..|||.+++--|.++|..-.+.|.+++++.........+..
T Consensus 5 gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~ 47 (254)
T d1sbya1 5 NKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAE 47 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHH
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHH
Confidence 4478888888888999999888889988888766544444443
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=82.03 E-value=1.4 Score=33.49 Aligned_cols=58 Identities=19% Similarity=0.242 Sum_probs=43.9
Q ss_pred HHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 020528 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (325)
Q Consensus 61 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 121 (325)
.+.+.+++|.+.+|. +.|--|......|+.+|...++.+.. ++.|++..+.+||+-..
T Consensus 20 ~~~a~~~~G~~VlV~-GaGgvGl~a~~~ak~~G~~~Vi~~d~--~~~kl~~a~~lGa~~~i 77 (174)
T d1p0fa2 20 VNTAKVTPGSTCAVF-GLGGVGFSAIVGCKAAGASRIIGVGT--HKDKFPKAIELGATECL 77 (174)
T ss_dssp HTTTCCCTTCEEEEE-CCSHHHHHHHHHHHHHTCSEEEEECS--CGGGHHHHHHTTCSEEE
T ss_pred HHhhCCCCCCEEEEE-CCCchhHHHHHHHHHcCCceeeccCC--hHHHHHHHHHcCCcEEE
Confidence 356778898665554 67889999999999999877776654 57778888888886544
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=81.79 E-value=4.9 Score=32.09 Aligned_cols=72 Identities=11% Similarity=0.080 Sum_probs=51.2
Q ss_pred CCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHHHHHh
Q 020528 69 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRDK 141 (325)
Q Consensus 69 g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 141 (325)
|+..||+.+++.-|.++|....+.|.++++.- .+........++.+|.+++.+..+ .+.++..+...+..++
T Consensus 5 gKvalVTGas~GIG~aia~~la~~Ga~V~~~~-~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~ 77 (247)
T d2ew8a1 5 DKLAVITGGANGIGRAIAERFAVEGADIAIAD-LVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVIST 77 (247)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-SSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEE-CCchHHHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 34789999999999999999999999877654 344456667788999888776542 2344555555555444
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=81.72 E-value=7 Score=31.32 Aligned_cols=71 Identities=20% Similarity=0.120 Sum_probs=43.0
Q ss_pred CCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHH----HHH--HHcCCEEEEeCCC-CChhHHHHHHHHHHHh
Q 020528 69 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERR----MVL--LAFGAELVLTDPA-RGMKGAVQKAEEIRDK 141 (325)
Q Consensus 69 g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~----~~~--~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 141 (325)
|+..||+.+++.-|.++|....+.|.++++.-.. ..++ ..+ ...+.+++.+..+ .+.++..+...+..++
T Consensus 4 gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~---~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 80 (258)
T d1iy8a_ 4 DRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVS---SEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER 80 (258)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC---HHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Confidence 3478899999999999999999999886655332 2222 222 2345666655332 2344454444555444
Q ss_pred C
Q 020528 142 T 142 (325)
Q Consensus 142 ~ 142 (325)
.
T Consensus 81 ~ 81 (258)
T d1iy8a_ 81 F 81 (258)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=81.67 E-value=5.7 Score=30.81 Aligned_cols=49 Identities=20% Similarity=0.236 Sum_probs=34.5
Q ss_pred HHHHHHHHHHH-HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEE
Q 020528 51 RIGYSMIADAE-EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIIT 99 (325)
Q Consensus 51 R~a~~~~~~a~-~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~ 99 (325)
+|..+.+..+. .+|.-.-..++|+..+.||-|..+|......|.++++.
T Consensus 7 ~Gv~~~~~~~~~~~g~~~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~ 56 (201)
T d1c1da1 7 VGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVA 56 (201)
T ss_dssp HHHHHHHHHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEe
Confidence 56666666554 34532223367888999999999999999888887644
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=81.62 E-value=7.1 Score=31.40 Aligned_cols=32 Identities=19% Similarity=0.252 Sum_probs=25.5
Q ss_pred CCeEEEecCCChhHHHHHHHHHHcCCeEEEEe
Q 020528 69 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITM 100 (325)
Q Consensus 69 g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~ 100 (325)
|+..||+.+++--|.++|....+.|.++++.-
T Consensus 6 gKvalITGas~GIG~aia~~la~~Ga~V~i~~ 37 (268)
T d2bgka1 6 DKVAIITGGAGGIGETTAKLFVRYGAKVVIAD 37 (268)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEE
Confidence 34788899888899999988888888766543
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=81.43 E-value=3.1 Score=33.77 Aligned_cols=73 Identities=16% Similarity=0.207 Sum_probs=51.4
Q ss_pred CCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHHHHHh
Q 020528 69 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS--LERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRDK 141 (325)
Q Consensus 69 g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 141 (325)
|++.||+.+++.-|.++|....+.|.++++....... ....+.++..|.+++.+..+ .+.++..+...+..+.
T Consensus 18 gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~ 93 (272)
T d1g0oa_ 18 GKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKI 93 (272)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHH
Confidence 3478999999999999999999999998877554322 23456778889888776542 2445555555555444
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=80.99 E-value=1.4 Score=33.21 Aligned_cols=57 Identities=18% Similarity=0.243 Sum_probs=41.3
Q ss_pred HHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 020528 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120 (325)
Q Consensus 61 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 120 (325)
.+++.++||.+.+|.. .|--|......++.+|.+.++.+.. ++.|.+..+.+||+-.
T Consensus 21 ~~~~~~~~G~tVlI~G-aGGvG~~aiq~ak~~G~~~vi~~~~--~~~k~~~ak~lGa~~~ 77 (176)
T d2fzwa2 21 VNTAKLEPGSVCAVFG-LGGVGLAVIMGCKVAGASRIIGVDI--NKDKFARAKEFGATEC 77 (176)
T ss_dssp HTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECS--CGGGHHHHHHHTCSEE
T ss_pred HHhhCCCCCCEEEEec-chhHHHHHHHHHHHHhcCceEEEcc--cHHHHHHHHHhCCcEE
Confidence 3567789997766654 4557888888899999887777644 5666777888887543
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=80.65 E-value=3.1 Score=33.63 Aligned_cols=74 Identities=12% Similarity=0.005 Sum_probs=51.4
Q ss_pred CCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHHHHHhC
Q 020528 69 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRDKT 142 (325)
Q Consensus 69 g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~~ 142 (325)
|++.||+.+++.-|.++|....+.|.++++.-..... ....+.++..|.+++.+..+ .+.++..+...+..++.
T Consensus 6 gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 81 (258)
T d1ae1a_ 6 GTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVF 81 (258)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999987776543211 23456788888888665432 24455555555655554
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=80.52 E-value=1.3 Score=31.80 Aligned_cols=46 Identities=11% Similarity=0.130 Sum_probs=33.5
Q ss_pred EEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 020528 73 LIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (325)
Q Consensus 73 vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 121 (325)
++..+.|+.|..+|-.-...|.+++++ +.++.+++.++..|..++.
T Consensus 3 ~iIiG~G~~G~~la~~L~~~g~~vvvi---d~d~~~~~~~~~~~~~~~~ 48 (134)
T d2hmva1 3 FAVIGLGRFGGSIVKELHRMGHEVLAV---DINEEKVNAYASYATHAVI 48 (134)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCCEEE---ESCHHHHHHTTTTCSEEEE
T ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEe---cCcHHHHHHHHHhCCccee
Confidence 455688999999999999999988876 2356666666666655543
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=80.46 E-value=4.4 Score=32.59 Aligned_cols=75 Identities=11% Similarity=0.140 Sum_probs=50.7
Q ss_pred CCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHH--HHHHHHHcCCEEEEeCCC-CChhHHHHHHHHHHHhCC
Q 020528 69 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLE--RRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRDKTP 143 (325)
Q Consensus 69 g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~--~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~~~ 143 (325)
|+..|||.+++.-|.++|..-.+.|.++++.-....... ..+..+.+|.+++.+..+ .+.++..+...+..++.+
T Consensus 9 gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 86 (260)
T d1h5qa_ 9 NKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLG 86 (260)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 347789999999999999999999999777665543322 233446778888766543 234455555566666653
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=80.33 E-value=4.5 Score=32.65 Aligned_cols=73 Identities=12% Similarity=0.143 Sum_probs=50.5
Q ss_pred CCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCC--CHHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHHHHHh
Q 020528 69 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM--SLERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRDK 141 (325)
Q Consensus 69 g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~--~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 141 (325)
|+..||+.+++--|.++|....+.|.++++.-.... .....+.++..|.+++.+..+ .+.++..+...+..++
T Consensus 7 gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~ 82 (261)
T d1geea_ 7 GKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKE 82 (261)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 347889988888999999999999999877655432 234466788899998877543 2344444445555444
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=80.08 E-value=4.2 Score=32.65 Aligned_cols=74 Identities=14% Similarity=0.120 Sum_probs=49.6
Q ss_pred CCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCC-CHHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHHHHHhC
Q 020528 69 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM-SLERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRDKT 142 (325)
Q Consensus 69 g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~-~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~~ 142 (325)
|+..|||.+++.-|.++|....+.|.++++.-.... -....+.++..|.+++.+..+ .+.++..+...+..++.
T Consensus 2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 77 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERY 77 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHh
Confidence 345689999999999999999999999766643211 123345667888887766542 24455555555655555
|