Citrus Sinensis ID: 020533

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-----
Protein Sequence
MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDTLMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQSEQQNSQIGAQTRTELLLKTWLGTDTPQ
Secondary Structure (PSIPRED)
ccccccccEEEEEcccHHHHHHHHHHHHcccccEEEEccccccccccccccccEEEEccccccccccccccccccccccHHHHHHHHHHHHHHccccccEEEcEEEEEEEEEcccccEEEEEEEccccccEEEEEEEccEEEEcccccccccccccccccccccccccccEEEccccccccccccccEEEEEcccccHHHHHHHHHccccEEEEEEEcccEEEccccccHHHHHHHHccHHHHHHHHHHHHHHHHccccccccccccccccHHHccccccEEEcHHHHHHHHccEEEEEcccEEEccccccEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHcccEEEEEcccHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHHEEEEcccHHHcccccccccccccccccHHHHHHHHHHHHHHcccccEEEEEEEEEEEEEcccccEEEEEEEEccccccEEEEEEEEEEEEEEccccccccccccccccccccccHcccEEEEccccccccHccccEEEEEEccccHHHHHHHHHHccccEEEEEcccEEEEcHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccHHHccccccccccccccccccccEEEccccHHHHcccEEEEEccEEEEcccccEEEEEEccccccccc
Coil and Loop (DISEMBL)
MKEQAAGVEVIMVGAGTSGLATAACLslqsipyviLERENCYASIWKKYSYDRLRLHLAKQfcqlphlpfpssypmfvsRAQFIEHLDHYvshfnigpsiryqrsvesasydeatNMWNvkasnllspgreieeYYSGRFLVVasgettnpftpdirglcsfcssatgtgevihstqykngkpyggknvlvvgsgnsGMEIALDLANHAAktslvvrspvhvLSREMVYLGVVLFkyvpfgwvDTLMVMLSRLVygdlskygipkpregpffmkaaygkypvidagtcekiksgqiqseqqnSQIGAQTRTELLLKTwlgtdtpq
Flexible Loop (DISEMBL)
MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHstqykngkpygGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDTLMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIqseqqnsqigaqTRTELLlktwlgtdtpq
Low Complexity Region (SEG)
MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDTLMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQSEQQNSQIGAQTRTELLLKTWLGTDTPQ
Disordered region (IsUnstruct)
******GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDTLMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKI********************ELLLKTWL******
Disordered Region (DISOPRED)
******G***IMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDTLMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQSEQQNSQIGAQTRTELLLKTWLG**T**
Disordered Region (DISEMBL)
MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDTLMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKS*************AQTRTELLLKTWLGTDTPQ
Disordered Region (DISPRO)
*****AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDTLMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQSEQQNSQIGAQTRTELLLKTWLG*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDTLMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQSEQQNSQIGAQTRTELLLKTWLGTDTPQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	325	2.2.26 [Sep-21-2011]
Q9FVQ0	383	Flavin-containing monooxy	yes	no	0.852	0.723	0.503	5e-83
Q9SVU0	426	Flavin-containing monooxy	no	no	0.855	0.652	0.465	9e-76
O64489	421	Flavin-containing monooxy	no	no	0.846	0.653	0.496	3e-74
Q9LPL3	391	Putative flavin-containin	no	no	0.907	0.754	0.456	4e-74
Q9LKC0	424	Flavin-containing monooxy	no	no	0.855	0.655	0.482	9e-74
O23024	437	Flavin-containing monooxy	no	no	0.858	0.638	0.458	3e-72
Q8VZ59	417	Flavin-containing monooxy	no	no	0.849	0.661	0.465	4e-70
O49312	431	Putative flavin-containin	no	no	0.849	0.640	0.471	9e-68
Q9SVQ1	415	Flavin-containing monooxy	no	no	0.849	0.665	0.448	2e-67
Q9SZY8	414	Flavin-containing monooxy	no	no	0.836	0.657	0.431	2e-66

>sp|Q9FVQ0|YUC10_ARATH Flavin-containing monooxygenase YUCCA10 OS=Arabidopsis thaliana GN=YUC10 PE=2 SV=1

 Score =  308 bits (788), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 145/288 (50%), Positives = 209/288 (72%), Gaps = 11/288 (3%)

Query: 10  VIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLP 69
           V++VGAG +GLAT+ CL+  SIP VILE+E+ YAS+WKK +YDRL+LHLAK+FCQLP +P
Sbjct: 5   VVIVGAGPAGLATSVCLNQHSIPNVILEKEDIYASLWKKRAYDRLKLHLAKEFCQLPFMP 64

Query: 70  FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPG 129
                P F+S+  F+ +LD YV+ F+I P  RY R+V+S+++DE+ N W V A N ++  
Sbjct: 65  HGREVPTFMSKELFVNYLDAYVARFDINP--RYNRTVKSSTFDESNNKWRVVAENTVTG- 121

Query: 130 REIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNV 189
            E E Y+S  FLVVA+GE  +   P + G+ +F       GE++HS++YK+G+ +  KNV
Sbjct: 122 -ETEVYWS-EFLVVATGENGDGNIPMVEGIDTF------GGEIMHSSEYKSGRDFKDKNV 173

Query: 190 LVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDTLMVM 249
           LVVG GNSGMEI+ DL N  A T++++R+P HV+++E+++LG+ L KY P   VDTL+  
Sbjct: 174 LVVGGGNSGMEISFDLCNFGANTTILIRTPRHVVTKEVIHLGMTLLKYAPVAMVDTLVTT 233

Query: 250 LSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQ 297
           +++++YGDLSKYG+ +P++GPF  K   GK PVID GT EKI+ G+IQ
Sbjct: 234 MAKILYGDLSKYGLFRPKQGPFATKLFTGKAPVIDVGTVEKIRDGEIQ 281

Involved in auxin biosynthesis.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 3EC: .EC: -

>sp|Q9SVU0|YUC8_ARATH Flavin-containing monooxygenase YUCCA8 OS=Arabidopsis thaliana GN=YUC8 PE=2 SV=1

 Score =  283 bits (725), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 136/292 (46%), Positives = 198/292 (67%), Gaps = 14/292 (4%)

Query: 11  IMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPF 70
           ++VGAG SGLATAACL  Q++P+V+LER +C AS+W+K +YDRL+LHL KQFCQLP +PF
Sbjct: 26  VIVGAGPSGLATAACLHEQNVPFVVLERADCIASLWQKRTYDRLKLHLPKQFCQLPKMPF 85

Query: 71  PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130
           P  +P + ++ QFI++L+ Y + F I P  ++   V++A +DE + +W VK  +  S   
Sbjct: 86  PEDFPEYPTKRQFIDYLESYATRFEINP--KFNECVQTARFDETSGLWRVKTVS-KSEST 142

Query: 131 EIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVL 190
           + E  Y  R+LVVA+GE      P+I GL  F      +GEVIH+  YK+G+ + GK VL
Sbjct: 143 QTEVEYICRWLVVATGENAERVMPEIDGLSEF------SGEVIHACDYKSGEKFAGKKVL 196

Query: 191 VVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV-----YLGVVLFKYVPFGWVDT 245
           VVG GNSGME++LDLANH AK S+VVRS +HV+ RE++      L + + ++ P   VD 
Sbjct: 197 VVGCGNSGMEVSLDLANHFAKPSMVVRSSLHVMPREVMGKSTFELAMKMLRWFPLWLVDK 256

Query: 246 LMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQ 297
           ++++LS +V G++ KYG+ +P  GP  +K+  GK PV+D G  EKI+ G+I 
Sbjct: 257 ILLVLSWMVLGNIEKYGLKRPEMGPMELKSVKGKTPVLDIGAIEKIRLGKIN 308

Involved in auxin biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|O64489|YUC9_ARATH Flavin-containing monooxygenase YUCCA9 OS=Arabidopsis thaliana GN=YUC9 PE=2 SV=1

 Score =  278 bits (712), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 145/292 (49%), Positives = 203/292 (69%), Gaps = 17/292 (5%)

Query: 11  IMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPF 70
           ++VGAG SGLATAACL  Q +P+V++ER +C AS+W+K +YDRL+LHL K+FCQLP +PF
Sbjct: 26  VIVGAGPSGLATAACLHDQGVPFVVVERSDCIASLWQKRTYDRLKLHLPKKFCQLPKMPF 85

Query: 71  PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130
           P  YP + ++ QFI++L+ Y + F+I P   + +SVESA +DE + +W V+ +   S G 
Sbjct: 86  PDHYPEYPTKRQFIDYLESYANRFDIKPE--FNKSVESARFDETSGLWRVRTT---SDGE 140

Query: 131 EIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVL 190
           E+E  Y  R+LVVA+GE      P+I GL +        GEVIH+ +YK+G+ + GK VL
Sbjct: 141 EME--YICRWLVVATGENAERVVPEINGLMT-----EFDGEVIHACEYKSGEKFRGKRVL 193

Query: 191 VVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV-----YLGVVLFKYVPFGWVDT 245
           VVG GNSGME++LDLANH A TS+VVRS VHVL RE++      + V++ K++P   VD 
Sbjct: 194 VVGCGNSGMEVSLDLANHNAITSMVVRSSVHVLPREIMGKSTFGISVMMMKWLPLWLVDK 253

Query: 246 LMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQ 297
           L+++LS LV G LS YG+ +P  GP  +K+  GK PV+D G  EKIKSG ++
Sbjct: 254 LLLILSWLVLGSLSNYGLKRPDIGPMELKSMTGKTPVLDIGALEKIKSGDVE 305

Involved in auxin biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|Q9LPL3|YUC11_ARATH Putative flavin-containing monooxygenase YUCCA11 OS=Arabidopsis thaliana GN=YUC11 PE=3 SV=1

 Score =  278 bits (711), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 140/307 (45%), Positives = 201/307 (65%), Gaps = 12/307 (3%)

Query: 3   EQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQF 62
           E+   + V+++GAG +GLAT+ACL+  +IP +++ER+ C AS+WK+ SYDRL+LHLAKQF
Sbjct: 2   EKEIKILVLIIGAGPAGLATSACLNRLNIPNIVVERDVCSASLWKRRSYDRLKLHLAKQF 61

Query: 63  CQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKA 122
           CQLPH+PFPS+ P FVS+  FI +LD Y + FN+ P  RY R+V+SA + +    W VK 
Sbjct: 62  CQLPHMPFPSNTPTFVSKLGFINYLDEYATRFNVNP--RYNRNVKSAYFKDG--QWIVKV 117

Query: 123 SNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGK 182
            N  +    + E YS +F+V A+GE      P+I GL       +  G+ +HS++YKNG+
Sbjct: 118 VNKTTA---LIEVYSAKFMVAATGENGEGVIPEIPGLVE-----SFQGKYLHSSEYKNGE 169

Query: 183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGW 242
            + GK+VLVVG GNSGMEIA DL+   A  S+VVRS VHVL+R +V +G+ L ++ P   
Sbjct: 170 KFAGKDVLVVGCGNSGMEIAYDLSKCNANVSIVVRSQVHVLTRCIVRIGMSLLRFFPVKL 229

Query: 243 VDTLMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQSEQQN 302
           VD L ++L+ L + + S+YG+ +P  GPF  K   G+   ID G   +IKSG+IQ     
Sbjct: 230 VDRLCLLLAELRFRNTSRYGLVRPNNGPFLNKLITGRSATIDVGCVGEIKSGKIQVVTSI 289

Query: 303 SQIGAQT 309
            +I  +T
Sbjct: 290 KRIEGKT 296

Involved in auxin biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|Q9LKC0|YUC5_ARATH Flavin-containing monooxygenase YUCCA5 OS=Arabidopsis thaliana GN=YUC5 PE=2 SV=1

 Score =  277 bits (708), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 141/292 (48%), Positives = 202/292 (69%), Gaps = 14/292 (4%)

Query: 11  IMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPF 70
           ++VGAG SGLATAACL  + +P+V+LER +C AS+W+K +YDR++LHL K+ CQLP +PF
Sbjct: 26  VIVGAGPSGLATAACLREEGVPFVVLERADCIASLWQKRTYDRIKLHLPKKVCQLPKMPF 85

Query: 71  PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130
           P  YP + ++ QFIE+L+ Y + F I P  ++   V+SA YDE + +W +K ++  S G 
Sbjct: 86  PEDYPEYPTKRQFIEYLESYANKFEITP--QFNECVQSARYDETSGLWRIKTTSSSSSGS 143

Query: 131 EIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVL 190
           E+E  Y  R+LVVA+GE      P+I GL     +    GEVIHS +YK+G+ Y GK+VL
Sbjct: 144 EME--YICRWLVVATGENAEKVVPEIDGL-----TTEFEGEVIHSCEYKSGEKYRGKSVL 196

Query: 191 VVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV-----YLGVVLFKYVPFGWVDT 245
           VVG GNSGME++LDLANH A  S+VVRS VHVL RE++      + ++L K+ P   VD 
Sbjct: 197 VVGCGNSGMEVSLDLANHNANASMVVRSSVHVLPREILGKSSFEISMMLMKWFPLWLVDK 256

Query: 246 LMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQ 297
           ++++L+ L+ G+L+KYG+ +P  GP  +K   GK PV+D G  EKIKSG+++
Sbjct: 257 ILLILAWLILGNLTKYGLKRPTMGPMELKIVSGKTPVLDIGAMEKIKSGEVE 308

Involved in auxin biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|O23024|YUC3_ARATH Flavin-containing monooxygenase YUCCA3 OS=Arabidopsis thaliana GN=YUC3 PE=2 SV=1

 Score =  272 bits (695), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 134/292 (45%), Positives = 189/292 (64%), Gaps = 13/292 (4%)

Query: 11  IMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPF 70
           ++VGAG SGLA AA L  + +P++ILER NC AS+W+  +YDRL+LHL KQFCQLP+ PF
Sbjct: 38  VIVGAGPSGLAVAAGLKREGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNYPF 97

Query: 71  PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130
           P  +P + ++ QFI++L+ Y ++F+I P  ++  +V+SA YDE   +W VK  + +    
Sbjct: 98  PDEFPEYPTKFQFIQYLESYAANFDINP--KFNETVQSAKYDETFGLWRVKTISNMGQLG 155

Query: 131 EIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVL 190
             E  Y  R++VVA+GE      PD  GL  F       G+V+H+  YK+G  Y GK VL
Sbjct: 156 SCEFEYICRWIVVATGENAEKVVPDFEGLEDF------GGDVLHAGDYKSGGRYQGKKVL 209

Query: 191 VVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREM-----VYLGVVLFKYVPFGWVDT 245
           VVG GNSGME++LDL NH A  S+VVRS VHVL RE+       LGV + KY+P    D 
Sbjct: 210 VVGCGNSGMEVSLDLYNHGANPSMVVRSAVHVLPREIFGKSTFELGVTMMKYMPVWLADK 269

Query: 246 LMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQ 297
            ++ L+R++ G+  KYG+ +P+ GP  +K   GK PV+D G   KI+SG+I+
Sbjct: 270 TILFLARIILGNTDKYGLKRPKIGPLELKNKEGKTPVLDIGALPKIRSGKIK 321

Involved in auxin biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|Q8VZ59|YUC6_ARATH Flavin-containing monooxygenase YUCCA6 OS=Arabidopsis thaliana GN=YUC6 PE=2 SV=1

 Score =  265 bits (676), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 136/292 (46%), Positives = 182/292 (62%), Gaps = 16/292 (5%)

Query: 11  IMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPF 70
           ++VGAG SGLATAACL  + I  V+LER NC AS+W+  +YDRL LHL KQFC+LP +PF
Sbjct: 33  VIVGAGPSGLATAACLKERGITSVLLERSNCIASLWQLKTYDRLHLHLPKQFCELPIIPF 92

Query: 71  PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130
           P  +P + ++ QFIE+L+ Y   F+I P   + ++VESA++DE   MW V      S G 
Sbjct: 93  PGDFPTYPTKQQFIEYLEDYARRFDIKPE--FNQTVESAAFDENLGMWRVT-----SVGE 145

Query: 131 EIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVL 190
           E    Y  R+LV A+GE   P  P   G+  F ++    G V H+  YK G  + GK VL
Sbjct: 146 EGTTEYVCRWLVAATGENAEPVVPRFEGMDKFAAA----GVVKHTCHYKTGGDFAGKRVL 201

Query: 191 VVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV-----YLGVVLFKYVPFGWVDT 245
           VVG GNSGME+ LDL N  A+ SLVVR  VHVL REM+      L + L K++P   VD 
Sbjct: 202 VVGCGNSGMEVCLDLCNFGAQPSLVVRDAVHVLPREMLGTSTFGLSMFLLKWLPIRLVDR 261

Query: 246 LMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQ 297
            ++++SR + GD +  G+ +PR GP  +K   GK PV+D GT  KIK+G I+
Sbjct: 262 FLLVVSRFILGDTTLLGLNRPRLGPLELKNISGKTPVLDVGTLAKIKTGDIK 313

Involved in auxin biosynthesis. Required for the formation of floral organs and vascular tissues.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|O49312|YUC7_ARATH Putative flavin-containing monooxygenase YUCCA7 OS=Arabidopsis thaliana GN=YUC7 PE=3 SV=1

 Score =  257 bits (656), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 139/295 (47%), Positives = 191/295 (64%), Gaps = 19/295 (6%)

Query: 11  IMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPF 70
           ++VGAG SGLA AA L  Q +P+VILER NC AS+W+  +YDRL+LHL KQFCQLP+LPF
Sbjct: 33  VIVGAGPSGLAVAADLKRQEVPFVILERANCIASLWQNRTYDRLKLHLPKQFCQLPNLPF 92

Query: 71  PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKA---SNLLS 127
           P   P + ++ QFIE+L+ Y +HF++ P  ++  +V+SA YD+   +W V+    S LL 
Sbjct: 93  PEDIPEYPTKYQFIEYLESYATHFDLRP--KFNETVQSAKYDKRFGLWRVQTVLRSELLG 150

Query: 128 PGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGK 187
                E  Y  R+LVVA+GE      P+  GL  F       G+V+H+  YK+G+ Y GK
Sbjct: 151 ---YCEFEYICRWLVVATGENAEKVVPEFEGLEDF------GGDVLHAGDYKSGERYRGK 201

Query: 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV-----YLGVVLFKYVPFGW 242
            VLVVG GNSGME++LDL NH A  S+VVRS VHVL RE++      L V + K++P   
Sbjct: 202 RVLVVGCGNSGMEVSLDLCNHDASPSMVVRSSVHVLPREVLGKSTFELSVTMMKWMPVWL 261

Query: 243 VDTLMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQ 297
           VD  +++L+RL+ G+  KYG+ +P  GP  +K   GK PV+D G    IKSG+I+
Sbjct: 262 VDKTLLVLTRLLLGNTDKYGLKRPEIGPLELKNTAGKTPVLDIGAISMIKSGKIK 316

Involved in auxin biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|Q9SVQ1|YUC2_ARATH Flavin-containing monooxygenase YUCCA2 OS=Arabidopsis thaliana GN=YUC2 PE=2 SV=1

 Score =  255 bits (652), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 131/292 (44%), Positives = 183/292 (62%), Gaps = 16/292 (5%)

Query: 11  IMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPF 70
           I+VG+G SGLATAACL  + IP +ILER  C AS+W+  +YDRLRLHL K FC+LP +PF
Sbjct: 29  IIVGSGPSGLATAACLKSRDIPSLILERSTCIASLWQHKTYDRLRLHLPKDFCELPLMPF 88

Query: 71  PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130
           PSSYP + ++ QF+++L+ Y  HF++ P   + ++VE A +D    +W V+ +       
Sbjct: 89  PSSYPTYPTKQQFVQYLESYAEHFDLKPV--FNQTVEEAKFDRRCGLWRVRTTG--GKKD 144

Query: 131 EIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVL 190
           E  EY S R+LVVA+GE      P+I G+  F       G ++H++ YK+G+ +  K +L
Sbjct: 145 ETMEYVS-RWLVVATGENAEEVMPEIDGIPDF------GGPILHTSSYKSGEIFSEKKIL 197

Query: 191 VVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVV-----LFKYVPFGWVDT 245
           VVG GNSGME+ LDL N  A  SLVVR  VHVL +EM+ +        L K+ P   VD 
Sbjct: 198 VVGCGNSGMEVCLDLCNFNALPSLVVRDSVHVLPQEMLGISTFGISTSLLKWFPVHVVDR 257

Query: 246 LMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQ 297
            ++ +SRLV GD  + G+ +P+ GP   K   GK PV+D GT  KI+SG I+
Sbjct: 258 FLLRMSRLVLGDTDRLGLVRPKLGPLERKIKCGKTPVLDVGTLAKIRSGHIK 309

Involved in auxin biosynthesis. Required for the formation of floral organs and vascular tissues.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|Q9SZY8|YUC1_ARATH Flavin-containing monooxygenase YUCCA1 OS=Arabidopsis thaliana GN=YUC1 PE=2 SV=1

 Score =  253 bits (645), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 126/292 (43%), Positives = 189/292 (64%), Gaps = 20/292 (6%)

Query: 11  IMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPF 70
           I++GAG SGLAT+ACLS + +P +ILER +  AS+WK  +YDRLRLHL K FC+LP L F
Sbjct: 22  IIIGAGPSGLATSACLSSRGVPSLILERSDSIASLWKSKTYDRLRLHLPKHFCRLPLLDF 81

Query: 71  PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130
           P  YP + S+ +F+ +L+ Y SHF I P  R+ ++V++A+YD ++  W VK         
Sbjct: 82  PEYYPKYPSKNEFLAYLESYASHFRIAP--RFNKNVQNAAYDSSSGFWRVKT-------H 132

Query: 131 EIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVL 190
           +  EY S ++L+VA+GE  +P+ P+I G   F       G+++H+++YK+G+ +  + VL
Sbjct: 133 DNTEYLS-KWLIVATGENADPYFPEIPGRKKFSG-----GKIVHASEYKSGEEFRRQKVL 186

Query: 191 VVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV-----YLGVVLFKYVPFGWVDT 245
           VVG GNSGMEI+LDL  H A   LVVR+ VHVL RE++      +G+ L K +P   VD 
Sbjct: 187 VVGCGNSGMEISLDLVRHNASPHLVVRNTVHVLPREILGVSTFGVGMTLLKCLPLRLVDK 246

Query: 246 LMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQ 297
            +++++ L +G+  + G+ +P+ GP  +K   GK PV+D G    I+SG IQ
Sbjct: 247 FLLLMANLSFGNTDRLGLRRPKTGPLELKNVTGKSPVLDVGAMSLIRSGMIQ 298

Catalyze N-oxidation of tryptamine to form N-hydroxyl tryptamine in auxin biosynthesis. Involved during embryogenesis and seedling development. Required for the formation of floral organs and vascular tissues.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	325
224129714	377	flavine-containing monoxygenase [Populus	0.849	0.732	0.682	1e-110
381216459	381	YUC7 [Fragaria vesca]	0.858	0.732	0.647	1e-104
290467591	374	YUCCA-like protein [Coffea arabica]	0.873	0.759	0.649	1e-102
255559338	377	monooxygenase, putative [Ricinus communi	0.867	0.748	0.636	1e-98
225436805	377	PREDICTED: flavin-containing monooxygena	0.852	0.734	0.628	5e-98
356503887	1043	PREDICTED: auxin response factor 7-like,	0.852	0.265	0.600	7e-97
225436807	393	PREDICTED: flavin-containing monooxygena	0.858	0.709	0.621	3e-96
388513013	384	unknown [Medicago truncatula]	0.852	0.721	0.619	1e-94
388519329	388	unknown [Lotus japonicus]	0.852	0.713	0.600	2e-94
359806440	390	uncharacterized protein LOC100777958 [Gl	0.855	0.712	0.591	2e-93

>gi|224129714|ref|XP_002320653.1| flavine-containing monoxygenase [Populus trichocarpa] gi|222861426|gb|EEE98968.1| flavine-containing monoxygenase [Populus trichocarpa]

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 196/287 (68%), Positives = 232/287 (80%), Gaps = 11/287 (3%)

Query: 11  IMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPF 70
           I+VGAG SGLAT+ACL+  SIP+++LERE+CYAS+WKKYSYDRLRLHL KQFC+LP + F
Sbjct: 7   IIVGAGPSGLATSACLNQHSIPHILLEREDCYASLWKKYSYDRLRLHLRKQFCELPRMSF 66

Query: 71  PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130
           P SYP +V + QF+++LD YVSHF I P   YQRSVE AS+DE    WNVKA N+ S   
Sbjct: 67  PDSYPTYVPKDQFLQYLDDYVSHFKISP--MYQRSVEFASFDEEAKKWNVKARNVSS--G 122

Query: 131 EIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVL 190
           EIEEY S RFLVVASGET+NPF P+  GL +F      TGEV+HST++KNGK Y  KNVL
Sbjct: 123 EIEEY-SARFLVVASGETSNPFIPEFEGLNTF------TGEVLHSTEFKNGKTYCDKNVL 175

Query: 191 VVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDTLMVML 250
           VVGSGNSGMEIALDLANH A+TS+ +RSP+H+LSREMVYLG+ + KY   G VD +MVML
Sbjct: 176 VVGSGNSGMEIALDLANHGARTSIAIRSPIHILSREMVYLGLNMLKYFSCGMVDKVMVML 235

Query: 251 SRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQ 297
           S+LVYGDLSK+GI +P+EGPFFMK AYGKYPV D GTC KIKSG+IQ
Sbjct: 236 SKLVYGDLSKHGIKRPKEGPFFMKVAYGKYPVFDVGTCNKIKSGEIQ 282

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|381216459|gb|AFG16920.1| YUC7 [Fragaria vesca]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 187/289 (64%), Positives = 227/289 (78%), Gaps = 10/289 (3%)

Query: 10  VIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLP 69
           VI+VGAG SGLA A CLS   IPY++LERE+C+AS+WKKYSYDRL LHL KQFC+LPH+ 
Sbjct: 6   VIIVGAGPSGLAVAGCLSRLEIPYLLLEREDCFASLWKKYSYDRLHLHLQKQFCELPHMS 65

Query: 70  FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKA-SNLLSP 128
           FPSS P +V + QFI++LD YV+HF I P   YQR+VESA+YDE +  W VKA +N    
Sbjct: 66  FPSSCPTYVPKKQFIQYLDDYVAHFKISP--MYQRNVESATYDEGSERWVVKAMNNDEGC 123

Query: 129 GREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKN 188
           G E+E +  GRFLVVA+GE TNP+ P+I GL SF       GEV+HST++K+G  +  KN
Sbjct: 124 GGEVEVFL-GRFLVVATGEATNPYVPEIEGLSSF------DGEVLHSTRFKSGVEFKNKN 176

Query: 189 VLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDTLMV 248
           VLVVGSGNSGMEIALDLANH A+TS++VRSPVH LS+ MVYL +VL +Y+    VDTLMV
Sbjct: 177 VLVVGSGNSGMEIALDLANHGARTSIIVRSPVHFLSKRMVYLALVLLRYLSLSKVDTLMV 236

Query: 249 MLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQ 297
           +LS+LVYGDL+KYGI +P+EGPFFMK  YGKYP ID GTC KIKSG+IQ
Sbjct: 237 LLSKLVYGDLAKYGIARPKEGPFFMKIKYGKYPAIDVGTCSKIKSGEIQ 285

Source: Fragaria vesca

Species: Fragaria vesca

Genus: Fragaria

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|290467591|gb|ADD25898.1| YUCCA-like protein [Coffea arabica]

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 193/297 (64%), Positives = 226/297 (76%), Gaps = 13/297 (4%)

Query: 2   KEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQ 61
           KEQ     VI+VGAG SGLATAACL+  SIP ++LERE+C+AS+WKKYSYDRL LHLAKQ
Sbjct: 4   KEQV----VIVVGAGPSGLATAACLNNLSIPNIVLEREDCFASLWKKYSYDRLHLHLAKQ 59

Query: 62  FCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVK 121
           FCQLP  PFP++YP +V R QF+ +LD YVSHFNI P   YQRSVESA YDEA   W VK
Sbjct: 60  FCQLPLKPFPTTYPTYVPRDQFLRYLDDYVSHFNICP--LYQRSVESARYDEAAEAWIVK 117

Query: 122 ASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNG 181
           A NL S   E  E YS + LVVA+GET++ F P + GL ++       GEVIHST+YKNG
Sbjct: 118 ARNLGSSDSEEMEEYSSKCLVVATGETSDAFIPQLEGLNTYL------GEVIHSTRYKNG 171

Query: 182 KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFG 241
           K Y  KNVLVVGSGNSGMEIA DL+N+ AKTS+ VRSP+H+LSR MVY+G VL KY    
Sbjct: 172 KSYENKNVLVVGSGNSGMEIAFDLSNYGAKTSIAVRSPLHILSRGMVYIGPVLLKYFSLN 231

Query: 242 WVDTLMVMLSRLVY-GDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQ 297
            VD L++MLS+L Y GDLS+YGI +P EGPF MK  YGKYPVID GTC+KIKSG+IQ
Sbjct: 232 TVDWLVLMLSKLWYGGDLSRYGIKRPEEGPFTMKVKYGKYPVIDVGTCQKIKSGEIQ 288

Source: Coffea arabica

Species: Coffea arabica

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559338|ref|XP_002520689.1| monooxygenase, putative [Ricinus communis] gi|223540074|gb|EEF41651.1| monooxygenase, putative [Ricinus communis]

 Score =  365 bits (938), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 189/297 (63%), Positives = 233/297 (78%), Gaps = 15/297 (5%)

Query: 1   MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAK 60
           M+EQ A    I+VGAG SGLAT+ACL+L SIP++ILERE+C AS+WKKYSYDRL LHL K
Sbjct: 1   MQEQIA----IIVGAGPSGLATSACLNLYSIPHIILEREDCCASLWKKYSYDRLHLHLKK 56

Query: 61  QFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNV 120
           QF +LPH+ FPSS P ++S+ QFI++LD YVSHF I P   YQR VE A+YD+ T  W +
Sbjct: 57  QFSELPHMSFPSSCPTYISKDQFIQYLDGYVSHFKISP--LYQRCVELATYDQGTKKWIL 114

Query: 121 KASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKN 180
           K  N+ S   ++E+Y S RFL+VASGET +PF PD+ GL SF      +G+ +HSTQ+KN
Sbjct: 115 KVRNVNSG--DVEDY-SARFLIVASGETCDPFIPDVEGLNSF------SGDALHSTQFKN 165

Query: 181 GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPF 240
           GK Y  KNVLVVGSGNSGMEIALDL NH AKTS+VVRSPVH+LSREMVYL + + KY P 
Sbjct: 166 GKAYRNKNVLVVGSGNSGMEIALDLVNHGAKTSIVVRSPVHILSREMVYLALAMLKYFPL 225

Query: 241 GWVDTLMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQ 297
           G VD+L+V+LS++V+GDL+KYG+ +  EGPFFMK AYGKYP+ID GT  KIKSG+IQ
Sbjct: 226 GLVDSLLVLLSKVVFGDLTKYGMSRATEGPFFMKVAYGKYPIIDVGTFNKIKSGEIQ 282

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436805|ref|XP_002269763.1| PREDICTED: flavin-containing monooxygenase YUCCA10 [Vitis vinifera]

 Score =  363 bits (933), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 181/288 (62%), Positives = 219/288 (76%), Gaps = 11/288 (3%)

Query: 10  VIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLP 69
           VI+VGAG SGLA A CL   SIPY+ILERE+C AS+WKK +YDRL LHL KQ+C LPH+ 
Sbjct: 6   VIIVGAGPSGLAMAGCLCQLSIPYLILEREDCCASLWKKKAYDRLHLHLPKQYCTLPHME 65

Query: 70  FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPG 129
            P+ +P + SR QF+++LD Y  HFNI P   Y+RSVES S+DE+   WNV   N     
Sbjct: 66  MPADWPKYPSRQQFVQYLDDYADHFNIRP--MYRRSVESGSFDESRGKWNVGVRN--GES 121

Query: 130 REIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNV 189
            E+EEY SG FLVVASGET++ F PDI GL +F       G+VIHSTQYKNGK +    V
Sbjct: 122 GELEEY-SGLFLVVASGETSDAFVPDIDGLSTF------IGKVIHSTQYKNGKEFADMKV 174

Query: 190 LVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDTLMVM 249
           LVVGSGNSGMEIALDL+N  AKTS+VVRSP+H+LSREMV LG+ L KY+P+  VD+LMV+
Sbjct: 175 LVVGSGNSGMEIALDLSNCGAKTSIVVRSPLHMLSREMVNLGLALLKYIPYNMVDSLMVI 234

Query: 250 LSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQ 297
           LS+LVYGDL+KYGI +P EGPFF+K  YGKYPV++ GT  KIKSG+IQ
Sbjct: 235 LSKLVYGDLNKYGITRPEEGPFFLKVKYGKYPVVNTGTFGKIKSGEIQ 282

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503887|ref|XP_003520732.1| PREDICTED: auxin response factor 7-like, partial [Glycine max]

 Score =  360 bits (923), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 173/288 (60%), Positives = 224/288 (77%), Gaps = 11/288 (3%)

Query: 10  VIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLP 69
           VI+VGAG SG++ AAC + QSIPY+ILERE+C AS+WKKYSY+RL LHL KQ+CQLPH P
Sbjct: 30  VIIVGAGPSGISAAACFTKQSIPYIILEREDCSASLWKKYSYERLHLHLRKQYCQLPHKP 89

Query: 70  FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPG 129
           FP+S+P +V + QF+++LD YVSHF I P   Y+R+VE A YD+  + W V A N     
Sbjct: 90  FPASFPPYVPKKQFLQYLDDYVSHFGITP--LYRRTVELAEYDQGCHNWRVMALN--GDS 145

Query: 130 REIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNV 189
            ++EEY  GRFLVVA+GETT+PF P+++GL  F       G++IHST +++GK +  ++V
Sbjct: 146 GQLEEY-RGRFLVVATGETTDPFVPELQGLSGF------PGKLIHSTGFRSGKDFKDQHV 198

Query: 190 LVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDTLMVM 249
           LVVGSGNSGMEIALDL NH AKTS++VRSPVH LSREMV LG+ L KY+    VD+LMVM
Sbjct: 199 LVVGSGNSGMEIALDLVNHGAKTSILVRSPVHFLSREMVSLGLFLLKYLSLSTVDSLMVM 258

Query: 250 LSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQ 297
           LS ++YGD++KYG+ +P EGPF+MK  YGKYPVID GT +KIKSG+++
Sbjct: 259 LSTMIYGDVTKYGVARPNEGPFYMKVKYGKYPVIDVGTYKKIKSGELK 306

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436807|ref|XP_002269844.1| PREDICTED: flavin-containing monooxygenase YUCCA10-like [Vitis vinifera]

 Score =  357 bits (917), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 179/288 (62%), Positives = 221/288 (76%), Gaps = 9/288 (3%)

Query: 10  VIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLP 69
           VI+VGAG SGLATAA L+L SIP ++LERE+C+A +W+K SYDRL LHL KQ C+L H+P
Sbjct: 21  VIVVGAGPSGLATAASLNLLSIPNIVLEREDCFAPLWQKKSYDRLHLHLPKQACELAHMP 80

Query: 70  FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPG 129
            P+SYP + SR QFI++L  YVSHF I P   Y R VESAS+DE T  W VK   +    
Sbjct: 81  MPTSYPTYPSRLQFIQYLRDYVSHFGISPV--YHRLVESASFDEVTEKWKVKVRVINGGS 138

Query: 130 REIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNV 189
            EIEEY S RFLVVASGET++ F P++ GL SF       GEV+HSTQYK GK Y  K V
Sbjct: 139 DEIEEY-SCRFLVVASGETSDAFIPEVEGLSSF------KGEVLHSTQYKCGKEYAEKTV 191

Query: 190 LVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDTLMVM 249
           LVVGSGNSGMEIALDL+N+ AKTS+VVRSPVH+LS+E+++LG+ L +Y+PF  V+ L VM
Sbjct: 192 LVVGSGNSGMEIALDLSNYGAKTSIVVRSPVHILSKEIMHLGLFLARYLPFNMVEYLTVM 251

Query: 250 LSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQ 297
           LS+++YGDL+KYGI +  EGPF +KA YGKYP+ID GT +KIKSG+IQ
Sbjct: 252 LSKIMYGDLTKYGIIRHEEGPFTVKAKYGKYPIIDLGTYKKIKSGEIQ 299

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513013|gb|AFK44568.1| unknown [Medicago truncatula]

 Score =  352 bits (903), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 179/289 (61%), Positives = 219/289 (75%), Gaps = 12/289 (4%)

Query: 10  VIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLP 69
           V ++GAGTSGLATAACL+ QSIP++ILERENC+AS+W+ Y+YDR+ LHL KQ C+LPH P
Sbjct: 6   VTIIGAGTSGLATAACLTKQSIPFIILERENCFASLWQNYTYDRVHLHLRKQLCELPHFP 65

Query: 70  FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASY-DEATNMWNVKASNLLSP 128
           FP SYP +V + QFIE+L +YV++FNI P   Y R+VE A Y D+    W VKA N  S 
Sbjct: 66  FPPSYPHYVPKKQFIEYLGNYVNNFNINPI--YNRAVELAEYVDDDEKKWRVKAENKSS- 122

Query: 129 GREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKN 188
             E+EEY S RFLVVASGET  P  P + GL +F       G+VIHST+YKNGK +  ++
Sbjct: 123 -GEVEEY-SARFLVVASGETAEPRVPVVEGLENF------KGKVIHSTRYKNGKEFKDEH 174

Query: 189 VLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDTLMV 248
           VLVVGSGNSGMEIALDLAN  AK S++VRSPVH+LSR+M+Y G VL  Y+    V+ L+V
Sbjct: 175 VLVVGSGNSGMEIALDLANFGAKPSIIVRSPVHILSRDMMYYGGVLLNYLSPSTVEKLVV 234

Query: 249 MLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQ 297
           + SR+VYGDLSKYGIP P EGPF MK  YGK+PVID GT +KIKSG+IQ
Sbjct: 235 IASRIVYGDLSKYGIPFPSEGPFTMKMKYGKFPVIDVGTVKKIKSGEIQ 283

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519329|gb|AFK47726.1| unknown [Lotus japonicus]

 Score =  351 bits (901), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 173/288 (60%), Positives = 215/288 (74%), Gaps = 11/288 (3%)

Query: 10  VIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLP 69
           VI+VG GTSG+ATA+CL+ +SI Y++LERE+C+AS+W+KY+YDRL LHL KQ C+LPH P
Sbjct: 6   VIIVGGGTSGIATASCLTKKSISYIMLEREDCFASLWQKYTYDRLHLHLRKQSCELPHFP 65

Query: 70  FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPG 129
           FP SYP +V + QFIE+LD+YV HFNI P   Y R+VE A +D +   W VKA N  S  
Sbjct: 66  FPPSYPHYVPKKQFIEYLDNYVKHFNINP--LYHRAVELAEHDNSHQNWRVKAKNRTS-- 121

Query: 130 REIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNV 189
             +EEY +G+FLVVA+GET  P  P++ GL  F       G+VIHST YKNGK +  +NV
Sbjct: 122 GHVEEY-AGKFLVVATGETAEPRIPEVEGLEGF------KGKVIHSTGYKNGKEFKNQNV 174

Query: 190 LVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDTLMVM 249
           LVVGSGNSGMEI+LDLAN  AK S++VRSPVH L+R+M+Y    L +Y+    V+ L+VM
Sbjct: 175 LVVGSGNSGMEISLDLANLGAKPSIIVRSPVHFLTRDMMYYAGELLRYLSLSTVENLVVM 234

Query: 250 LSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQ 297
            SR+VYGDLSKYGIP P EGPF MK  YGK+PVID GT  KIKSG+IQ
Sbjct: 235 ASRIVYGDLSKYGIPVPTEGPFTMKMKYGKFPVIDVGTVNKIKSGEIQ 282

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806440|ref|NP_001241501.1| uncharacterized protein LOC100777958 [Glycine max] gi|255640068|gb|ACU20325.1| unknown [Glycine max]

 Score =  348 bits (894), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 171/289 (59%), Positives = 218/289 (75%), Gaps = 11/289 (3%)

Query: 9   EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHL 68
           +VI++GAGTSG+ATA CL+ QSIPY++LERE+C+AS+W+KY+YDRL LHL KQ C+LPHL
Sbjct: 6   KVIIIGAGTSGIATAGCLTKQSIPYIMLEREDCFASLWQKYTYDRLHLHLRKQVCELPHL 65

Query: 69  PFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSP 128
           PFP SYP +V R QFI++L +YV+HF I P   YQR+VE   YD    +W VKA N  S 
Sbjct: 66  PFPKSYPHYVPRKQFIDYLGNYVNHFEIKP--LYQRAVELVEYDGWKGIWRVKAQNRRSG 123

Query: 129 GREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKN 188
             E+EEY +G++LVVASGET  P  P I+GL SF       G+VIHST YKNG  +  K+
Sbjct: 124 --ELEEY-AGKYLVVASGETAEPRLPQIQGLESF------NGKVIHSTAYKNGNEFKNKH 174

Query: 189 VLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDTLMV 248
           VLVVGSGNSGMEIALDL+N  AK S++VRSPVH LSR+M+Y   ++  Y+    V+ ++V
Sbjct: 175 VLVVGSGNSGMEIALDLSNFGAKPSIIVRSPVHFLSRDMMYYASLMLNYLSLSTVEKVLV 234

Query: 249 MLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQ 297
           M+S++VYGDLS+YGIP P EGPF MK  Y K+P+ID GT +KIKS +IQ
Sbjct: 235 MVSKVVYGDLSEYGIPYPSEGPFTMKMKYAKFPIIDVGTVKKIKSREIQ 283

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	325
TAIR|locus:2028558	383	YUC10 "AT1G48910" [Arabidopsis	0.852	0.723	0.510	1e-75
TAIR|locus:2149524	424	YUC5 "AT5G43890" [Arabidopsis	0.855	0.655	0.482	2.3e-71
TAIR|locus:2020250	421	YUC9 "AT1G04180" [Arabidopsis	0.846	0.653	0.496	4.8e-71
TAIR|locus:2117783	426	YUC8 "AT4G28720" [Arabidopsis	0.852	0.650	0.467	8e-69
TAIR|locus:2026967	391	YUC11 "AT1G21430" [Arabidopsis	0.904	0.751	0.461	5.1e-67
TAIR|locus:2197863	437	YUC3 "YUCCA 3" [Arabidopsis th	0.855	0.636	0.470	8.2e-67
TAIR|locus:2046545	431	YUC7 "AT2G33230" [Arabidopsis	0.849	0.640	0.477	1.5e-65
TAIR|locus:2119340	415	YUC2 "YUCCA2" [Arabidopsis tha	0.849	0.665	0.455	3.8e-62
TAIR|locus:2131322	414	YUC1 "YUCCA 1" [Arabidopsis th	0.836	0.657	0.434	2.1e-61
TAIR|locus:2147962	411	YUC4 "AT5G11320" [Arabidopsis	0.861	0.681	0.359	3.1e-44

TAIR|locus:2028558 YUC10 "AT1G48910" [Arabidopsis thaliana (taxid:3702)]

 Score = 763 (273.6 bits), Expect = 1.0e-75, P = 1.0e-75
 Identities = 147/288 (51%), Positives = 211/288 (73%)

Query:    10 VIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLP 69
             V++VGAG +GLAT+ CL+  SIP VILE+E+ YAS+WKK +YDRL+LHLAK+FCQLP +P
Sbjct:     5 VVIVGAGPAGLATSVCLNQHSIPNVILEKEDIYASLWKKRAYDRLKLHLAKEFCQLPFMP 64

Query:    70 FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPG 129
                  P F+S+  F+ +LD YV+ F+I P  RY R+V+S+++DE+ N W V A N ++ G
Sbjct:    65 HGREVPTFMSKELFVNYLDAYVARFDINP--RYNRTVKSSTFDESNNKWRVVAENTVT-G 121

Query:   130 REIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNV 189
              E E Y+S  FLVVA+GE  +   P + G+ +F     G GE++HS++YK+G+ +  KNV
Sbjct:   122 -ETEVYWS-EFLVVATGENGDGNIPMVEGIDTF-----G-GEIMHSSEYKSGRDFKDKNV 173

Query:   190 LVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDTLMVM 249
             LVVG GNSGMEI+ DL N  A T++++R+P HV+++E+++LG+ L KY P   VDTL+  
Sbjct:   174 LVVGGGNSGMEISFDLCNFGANTTILIRTPRHVVTKEVIHLGMTLLKYAPVAMVDTLVTT 233

Query:   250 LSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQ 297
             +++++YGDLSKYG+ +P++GPF  K   GK PVID GT EKI+ G+IQ
Sbjct:   234 MAKILYGDLSKYGLFRPKQGPFATKLFTGKAPVIDVGTVEKIRDGEIQ 281

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0022603 "regulation of anatomical structure morphogenesis" evidence=IGI

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

TAIR|locus:2149524 YUC5 "AT5G43890" [Arabidopsis thaliana (taxid:3702)]

 Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
 Identities = 141/292 (48%), Positives = 202/292 (69%)

Query:    11 IMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPF 70
             ++VGAG SGLATAACL  + +P+V+LER +C AS+W+K +YDR++LHL K+ CQLP +PF
Sbjct:    26 VIVGAGPSGLATAACLREEGVPFVVLERADCIASLWQKRTYDRIKLHLPKKVCQLPKMPF 85

Query:    71 PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130
             P  YP + ++ QFIE+L+ Y + F I P  ++   V+SA YDE + +W +K ++  S G 
Sbjct:    86 PEDYPEYPTKRQFIEYLESYANKFEITP--QFNECVQSARYDETSGLWRIKTTSSSSSGS 143

Query:   131 EIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVL 190
             E+E  Y  R+LVVA+GE      P+I GL     +    GEVIHS +YK+G+ Y GK+VL
Sbjct:   144 EME--YICRWLVVATGENAEKVVPEIDGL-----TTEFEGEVIHSCEYKSGEKYRGKSVL 196

Query:   191 VVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV-----YLGVVLFKYVPFGWVDT 245
             VVG GNSGME++LDLANH A  S+VVRS VHVL RE++      + ++L K+ P   VD 
Sbjct:   197 VVGCGNSGMEVSLDLANHNANASMVVRSSVHVLPREILGKSSFEISMMLMKWFPLWLVDK 256

Query:   246 LMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQ 297
             ++++L+ L+ G+L+KYG+ +P  GP  +K   GK PV+D G  EKIKSG+++
Sbjct:   257 ILLILAWLILGNLTKYGLKRPTMGPMELKIVSGKTPVLDIGAMEKIKSGEVE 308

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009851 "auxin biosynthetic process" evidence=IMP

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

TAIR|locus:2020250 YUC9 "AT1G04180" [Arabidopsis thaliana (taxid:3702)]

 Score = 719 (258.2 bits), Expect = 4.8e-71, P = 4.8e-71
 Identities = 145/292 (49%), Positives = 203/292 (69%)

Query:    11 IMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPF 70
             ++VGAG SGLATAACL  Q +P+V++ER +C AS+W+K +YDRL+LHL K+FCQLP +PF
Sbjct:    26 VIVGAGPSGLATAACLHDQGVPFVVVERSDCIASLWQKRTYDRLKLHLPKKFCQLPKMPF 85

Query:    71 PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130
             P  YP + ++ QFI++L+ Y + F+I P   + +SVESA +DE + +W V+ +   S G 
Sbjct:    86 PDHYPEYPTKRQFIDYLESYANRFDIKPE--FNKSVESARFDETSGLWRVRTT---SDGE 140

Query:   131 EIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVL 190
             E+E  Y  R+LVVA+GE      P+I GL +        GEVIH+ +YK+G+ + GK VL
Sbjct:   141 EME--YICRWLVVATGENAERVVPEINGLMTEFD-----GEVIHACEYKSGEKFRGKRVL 193

Query:   191 VVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVY-----LGVVLFKYVPFGWVDT 245
             VVG GNSGME++LDLANH A TS+VVRS VHVL RE++      + V++ K++P   VD 
Sbjct:   194 VVGCGNSGMEVSLDLANHNAITSMVVRSSVHVLPREIMGKSTFGISVMMMKWLPLWLVDK 253

Query:   246 LMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQ 297
             L+++LS LV G LS YG+ +P  GP  +K+  GK PV+D G  EKIKSG ++
Sbjct:   254 LLLILSWLVLGSLSNYGLKRPDIGPMELKSMTGKTPVLDIGALEKIKSGDVE 305

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2117783 YUC8 "AT4G28720" [Arabidopsis thaliana (taxid:3702)]

 Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
 Identities = 136/291 (46%), Positives = 198/291 (68%)

Query:    11 IMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPF 70
             ++VGAG SGLATAACL  Q++P+V+LER +C AS+W+K +YDRL+LHL KQFCQLP +PF
Sbjct:    26 VIVGAGPSGLATAACLHEQNVPFVVLERADCIASLWQKRTYDRLKLHLPKQFCQLPKMPF 85

Query:    71 PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130
             P  +P + ++ QFI++L+ Y + F I P  ++   V++A +DE + +W VK  +  S   
Sbjct:    86 PEDFPEYPTKRQFIDYLESYATRFEINP--KFNECVQTARFDETSGLWRVKTVSK-SEST 142

Query:   131 EIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVL 190
             + E  Y  R+LVVA+GE      P+I GL  F      +GEVIH+  YK+G+ + GK VL
Sbjct:   143 QTEVEYICRWLVVATGENAERVMPEIDGLSEF------SGEVIHACDYKSGEKFAGKKVL 196

Query:   191 VVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV-----YLGVVLFKYVPFGWVDT 245
             VVG GNSGME++LDLANH AK S+VVRS +HV+ RE++      L + + ++ P   VD 
Sbjct:   197 VVGCGNSGMEVSLDLANHFAKPSMVVRSSLHVMPREVMGKSTFELAMKMLRWFPLWLVDK 256

Query:   246 LMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQI 296
             ++++LS +V G++ KYG+ +P  GP  +K+  GK PV+D G  EKI+ G+I
Sbjct:   257 ILLVLSWMVLGNIEKYGLKRPEMGPMELKSVKGKTPVLDIGAIEKIRLGKI 307

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009851 "auxin biosynthetic process" evidence=TAS

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IGI

TAIR|locus:2026967 YUC11 "AT1G21430" [Arabidopsis thaliana (taxid:3702)]

 Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
 Identities = 142/308 (46%), Positives = 202/308 (65%)

Query:     3 EQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQF 62
             E+   + V+++GAG +GLAT+ACL+  +IP +++ER+ C AS+WK+ SYDRL+LHLAKQF
Sbjct:     2 EKEIKILVLIIGAGPAGLATSACLNRLNIPNIVVERDVCSASLWKRRSYDRLKLHLAKQF 61

Query:    63 CQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKA 122
             CQLPH+PFPS+ P FVS+  FI +LD Y + FN+ P  RY R+V+SA + +    W VK 
Sbjct:    62 CQLPHMPFPSNTPTFVSKLGFINYLDEYATRFNVNP--RYNRNVKSAYFKDG--QWIVKV 117

Query:   123 SNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLC-SFCSSATGTGEVIHSTQYKNG 181
              N  +    + E YS +F+V A+GE      P+I GL  SF       G+ +HS++YKNG
Sbjct:   118 VNKTTA---LIEVYSAKFMVAATGENGEGVIPEIPGLVESF------QGKYLHSSEYKNG 168

Query:   182 KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFG 241
             + + GK+VLVVG GNSGMEIA DL+   A  S+VVRS VHVL+R +V +G+ L ++ P  
Sbjct:   169 EKFAGKDVLVVGCGNSGMEIAYDLSKCNANVSIVVRSQVHVLTRCIVRIGMSLLRFFPVK 228

Query:   242 WVDTLMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQSEQQ 301
              VD L ++L+ L + + S+YG+ +P  GPF  K   G+   ID G   +IKSG+IQ    
Sbjct:   229 LVDRLCLLLAELRFRNTSRYGLVRPNNGPFLNKLITGRSATIDVGCVGEIKSGKIQVVTS 288

Query:   302 NSQIGAQT 309
               +I  +T
Sbjct:   289 IKRIEGKT 296

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0022603 "regulation of anatomical structure morphogenesis" evidence=IGI

TAIR|locus:2197863 YUC3 "YUCCA 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
 Identities = 138/293 (47%), Positives = 192/293 (65%)

Query:    11 IMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPF 70
             ++VGAG SGLA AA L  + +P++ILER NC AS+W+  +YDRL+LHL KQFCQLP+ PF
Sbjct:    38 VIVGAGPSGLAVAAGLKREGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNYPF 97

Query:    71 PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKA-SNLLSPG 129
             P  +P + ++ QFI++L+ Y ++F+I P  ++  +V+SA YDE   +W VK  SN+   G
Sbjct:    98 PDEFPEYPTKFQFIQYLESYAANFDINP--KFNETVQSAKYDETFGLWRVKTISNMGQLG 155

Query:   130 REIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNV 189
                E  Y  R++VVA+GE      PD  GL  F     G G+V+H+  YK+G  Y GK V
Sbjct:   156 -SCEFEYICRWIVVATGENAEKVVPDFEGLEDF-----G-GDVLHAGDYKSGGRYQGKKV 208

Query:   190 LVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV-----YLGVVLFKYVPFGWVD 244
             LVVG GNSGME++LDL NH A  S+VVRS VHVL RE+       LGV + KY+P    D
Sbjct:   209 LVVGCGNSGMEVSLDLYNHGANPSMVVRSAVHVLPREIFGKSTFELGVTMMKYMPVWLAD 268

Query:   245 TLMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQ 297
               ++ L+R++ G+  KYG+ +P+ GP  +K   GK PV+D G   KI+SG+I+
Sbjct:   269 KTILFLARIILGNTDKYGLKRPKIGPLELKNKEGKTPVLDIGALPKIRSGKIK 321

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009851 "auxin biosynthetic process" evidence=IMP

TAIR|locus:2046545 YUC7 "AT2G33230" [Arabidopsis thaliana (taxid:3702)]

 Score = 667 (239.9 bits), Expect = 1.5e-65, P = 1.5e-65
 Identities = 141/295 (47%), Positives = 193/295 (65%)

Query:    11 IMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPF 70
             ++VGAG SGLA AA L  Q +P+VILER NC AS+W+  +YDRL+LHL KQFCQLP+LPF
Sbjct:    33 VIVGAGPSGLAVAADLKRQEVPFVILERANCIASLWQNRTYDRLKLHLPKQFCQLPNLPF 92

Query:    71 PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKA---SNLLS 127
             P   P + ++ QFIE+L+ Y +HF++ P  ++  +V+SA YD+   +W V+    S LL 
Sbjct:    93 PEDIPEYPTKYQFIEYLESYATHFDLRP--KFNETVQSAKYDKRFGLWRVQTVLRSELLG 150

Query:   128 PGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGK 187
                E E  Y  R+LVVA+GE      P+  GL  F     G G+V+H+  YK+G+ Y GK
Sbjct:   151 YC-EFE--YICRWLVVATGENAEKVVPEFEGLEDF-----G-GDVLHAGDYKSGERYRGK 201

Query:   188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV-----YLGVVLFKYVPFGW 242
              VLVVG GNSGME++LDL NH A  S+VVRS VHVL RE++      L V + K++P   
Sbjct:   202 RVLVVGCGNSGMEVSLDLCNHDASPSMVVRSSVHVLPREVLGKSTFELSVTMMKWMPVWL 261

Query:   243 VDTLMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQ 297
             VD  +++L+RL+ G+  KYG+ +P  GP  +K   GK PV+D G    IKSG+I+
Sbjct:   262 VDKTLLVLTRLLLGNTDKYGLKRPEIGPLELKNTAGKTPVLDIGAISMIKSGKIK 316

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009684 "indoleacetic acid biosynthetic process" evidence=IMP

TAIR|locus:2119340 YUC2 "YUCCA2" [Arabidopsis thaliana (taxid:3702)]

 Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
 Identities = 133/292 (45%), Positives = 186/292 (63%)

Query:    11 IMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPF 70
             I+VG+G SGLATAACL  + IP +ILER  C AS+W+  +YDRLRLHL K FC+LP +PF
Sbjct:    29 IIVGSGPSGLATAACLKSRDIPSLILERSTCIASLWQHKTYDRLRLHLPKDFCELPLMPF 88

Query:    71 PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130
             PSSYP + ++ QF+++L+ Y  HF++ P   + ++VE A +D    +W V+ +       
Sbjct:    89 PSSYPTYPTKQQFVQYLESYAEHFDLKPV--FNQTVEEAKFDRRCGLWRVRTTG--GKKD 144

Query:   131 EIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVL 190
             E  EY S R+LVVA+GE      P+I G+  F     G G ++H++ YK+G+ +  K +L
Sbjct:   145 ETMEYVS-RWLVVATGENAEEVMPEIDGIPDF-----G-GPILHTSSYKSGEIFSEKKIL 197

Query:   191 VVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYL---GVV--LFKYVPFGWVDT 245
             VVG GNSGME+ LDL N  A  SLVVR  VHVL +EM+ +   G+   L K+ P   VD 
Sbjct:   198 VVGCGNSGMEVCLDLCNFNALPSLVVRDSVHVLPQEMLGISTFGISTSLLKWFPVHVVDR 257

Query:   246 LMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQ 297
              ++ +SRLV GD  + G+ +P+ GP   K   GK PV+D GT  KI+SG I+
Sbjct:   258 FLLRMSRLVLGDTDRLGLVRPKLGPLERKIKCGKTPVLDVGTLAKIRSGHIK 309

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009851 "auxin biosynthetic process" evidence=IMP

TAIR|locus:2131322 YUC1 "YUCCA 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 127/292 (43%), Positives = 191/292 (65%)

Query:    11 IMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPF 70
             I++GAG SGLAT+ACLS + +P +ILER +  AS+WK  +YDRLRLHL K FC+LP L F
Sbjct:    22 IIIGAGPSGLATSACLSSRGVPSLILERSDSIASLWKSKTYDRLRLHLPKHFCRLPLLDF 81

Query:    71 PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130
             P  YP + S+ +F+ +L+ Y SHF I P  R+ ++V++A+YD ++  W VK         
Sbjct:    82 PEYYPKYPSKNEFLAYLESYASHFRIAP--RFNKNVQNAAYDSSSGFWRVKT-------H 132

Query:   131 EIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVL 190
             +  EY S ++L+VA+GE  +P+ P+I G   F    +G G+++H+++YK+G+ +  + VL
Sbjct:   133 DNTEYLS-KWLIVATGENADPYFPEIPGRKKF----SG-GKIVHASEYKSGEEFRRQKVL 186

Query:   191 VVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYL-----GVVLFKYVPFGWVDT 245
             VVG GNSGMEI+LDL  H A   LVVR+ VHVL RE++ +     G+ L K +P   VD 
Sbjct:   187 VVGCGNSGMEISLDLVRHNASPHLVVRNTVHVLPREILGVSTFGVGMTLLKCLPLRLVDK 246

Query:   246 LMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQ 297
              +++++ L +G+  + G+ +P+ GP  +K   GK PV+D G    I+SG IQ
Sbjct:   247 FLLLMANLSFGNTDRLGLRRPKTGPLELKNVTGKSPVLDVGAMSLIRSGMIQ 298

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009851 "auxin biosynthetic process" evidence=RCA;IMP

GO:0022603 "regulation of anatomical structure morphogenesis" evidence=IGI

GO:2000024 "regulation of leaf development" evidence=IGI

GO:0009911 "positive regulation of flower development" evidence=IGI

GO:0010229 "inflorescence development" evidence=IGI;RCA

GO:0048825 "cotyledon development" evidence=IGI;RCA

GO:0048827 "phyllome development" evidence=IGI

TAIR|locus:2147962 YUC4 "AT5G11320" [Arabidopsis thaliana (taxid:3702)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 107/298 (35%), Positives = 160/298 (53%)

Query:    11 IMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPF 70
             I+VGAG SGLA AACLS + +P VILER +C AS+W+K +YDRL+LHL K FC+LP +PF
Sbjct:    18 IIVGAGPSGLAVAACLSNRGVPSVILERTDCLASLWQKRTYDRLKLHLPKHFCELPLMPF 77

Query:    71 PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130
             P ++P + S+  FI +++ Y + FNI P   + ++VE A +D+A+ +WNVK  +    G 
Sbjct:    78 PKNFPKYPSKQLFISYVESYAARFNIKPV--FNQTVEKAEFDDASGLWNVKTQD----G- 130

Query:   131 EIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVL 190
                  Y+  +LVVA+GE   P  P+I GL  F      T      + + N K      V+
Sbjct:   131 ----VYTSTWLVVATGENAEPVFPNIPGLKKFTGPVVHTSAYKSGSAFANRKVL----VV 182

Query:   191 VVGSGNSGMEIALDLAN---HAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDTLM 247
               G+    + + L   N   H    + V   P          + + L K+ P   VD  +
Sbjct:   183 GCGNSGMEVSLDLCRYNALPHMVVRNSVHVLPRDFFGLSTFGIAMTLLKWFPLKLVDKFL 242

Query:   248 VMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQSEQQNSQI 305
             ++L+    G+    G+ +P+ GP  +K   GK PV+D G    I+SGQI+  Q   +I
Sbjct:   243 LLLANSTLGNTDLLGLRRPKTGPIELKNVTGKTPVLDVGAISLIRSGQIKVTQAVKEI 300

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009851 "auxin biosynthetic process" evidence=RCA;IDA;IMP

GO:0022603 "regulation of anatomical structure morphogenesis" evidence=IGI

GO:2000024 "regulation of leaf development" evidence=IGI

GO:0009911 "positive regulation of flower development" evidence=IGI

GO:0010229 "inflorescence development" evidence=IGI;RCA

GO:0048825 "cotyledon development" evidence=IGI;RCA

GO:0048827 "phyllome development" evidence=IGI

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005654 "nucleoplasm" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0047434 "indolepyruvate decarboxylase activity" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FVQ0	YUC10_ARATH	1, ., 1, 4, ., 1, 3, ., -	0.5034	0.8523	0.7232	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.14.13	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: FML12 flavine-containing monoxygenase (377 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	325
COG2072	443	COG2072, TrkA, Predicted flavoprotein involved in	3e-48
pfam00743	532	pfam00743, FMO-like, Flavin-binding monooxygenase-	1e-21
TIGR04046	400	TIGR04046, MSMEG_0569_nitr, flavin-dependent oxido	1e-15
pfam13738	202	pfam13738, Pyr_redox_3, Pyridine nucleotide-disulp	5e-14
pfam13434	335	pfam13434, K_oxygenase, L-lysine 6-monooxygenase (	2e-12
PLN02172	461	PLN02172, PLN02172, flavin-containing monooxygenas	3e-10
TIGR04018	316	TIGR04018, Bthiol_YpdA, putative bacillithiol syst	2e-09
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	6e-09
COG0492	305	COG0492, TrxB, Thioredoxin reductase [Posttranslat	1e-05
pfam00070	82	pfam00070, Pyr_redox, Pyridine nucleotide-disulphi	7e-05
COG3486	436	COG3486, IucD, Lysine/ornithine N-monooxygenase [S	1e-04
PRK15317	517	PRK15317, PRK15317, alkyl hydroperoxide reductase	3e-04
TIGR01292	299	TIGR01292, TRX_reduct, thioredoxin-disulfide reduc	3e-04
TIGR03140	515	TIGR03140, AhpF, alkyl hydroperoxide reductase sub	0.002
COG1231	450	COG1231, COG1231, Monoamine oxidase [Amino acid tr	0.002

>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

 Score =  167 bits (424), Expect = 3e-48
 Identities = 87/292 (29%), Positives = 131/292 (44%), Gaps = 22/292 (7%)

Query: 8   VEVIMVGAGTSGLATAACLSLQSIP-YVILERENCYASIWKKYSYDRLRLHLAKQFCQLP 66
            +V ++GAG SGLA A  L    +P +VI E+ +     W+   Y  LRL   K     P
Sbjct: 9   TDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFP 68

Query: 67  HLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLL 126
            LPF      F   A+  +++  Y+  + +   IR+   VE A +DE T  W V  S+  
Sbjct: 69  FLPFRWD-EAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSD-- 125

Query: 127 SPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGG 186
             G   E   +  F+VVA+G  + P+ PD  GL  F       G ++HS  + N +   G
Sbjct: 126 --GGTGE--LTADFVVVATGHLSEPYIPDFAGLDEF------KGRILHSADWPNPEDLRG 175

Query: 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDTL 246
           K VLV+G+G S ++IA +LA   A  +L  RSP H+L +    LG  +   +        
Sbjct: 176 KRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHILPKP--LLGEEVGGRLALRRALPA 233

Query: 247 MVMLSRLVYGDLSK---YGIPKPREGPFFMKA---AYGKYPVIDAGTCEKIK 292
              L R    D        +P        ++A   A  ++ V+DAG  E + 
Sbjct: 234 GWALRRGRVLDALLPGAGYLPAFPAPDKRVEALLRAALRFLVLDAGVREDLG 285

Length = 443

>gnl|CDD|109787 pfam00743, FMO-like, Flavin-binding monooxygenase-like

 Score = 94.9 bits (236), Expect = 1e-21
 Identities = 67/228 (29%), Positives = 112/228 (49%), Gaps = 21/228 (9%)

Query: 10  VIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK---------KYSYDRLRLHLAK 60
           V ++GAG SGL++  C   + +     ER +    +W+            Y  +  + +K
Sbjct: 4   VAVIGAGVSGLSSIKCCLEEGLEPTCFERSDDIGGLWRFTEHVEEGRASIYKSVVTNSSK 63

Query: 61  QFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASY--DEATN-M 117
           +       PFP  YP F+  ++F+E+L  +  HF++   I+++ +V S +   D +T+  
Sbjct: 64  EMSCFSDFPFPEDYPNFMHNSKFLEYLRMFAKHFDLLKYIQFKTTVCSVTKRPDFSTSGQ 123

Query: 118 WNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQ 177
           W V        G++    +    ++V +G  TNP  P    L SF       G+  HS  
Sbjct: 124 WEVVTE---HEGKQESAVFDA--VMVCTGHHTNPHLP----LESFPGINKFKGQYFHSRD 174

Query: 178 YKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSR 225
           YK+ + + GK VLV+G GNSG +IA++L+  AA+  L  R+   VLSR
Sbjct: 175 YKHPEGFQGKRVLVIGLGNSGGDIAVELSRTAAQVFLSTRTGSWVLSR 222

This family includes FMO proteins, cyclohexanone mono-oxygenase and a number of different mono-oxygenases. Length = 532

>gnl|CDD|234447 TIGR04046, MSMEG_0569_nitr, flavin-dependent oxidoreductase, MSMEG_0569 family

 Score = 76.6 bits (189), Expect = 1e-15
 Identities = 58/201 (28%), Positives = 92/201 (45%), Gaps = 28/201 (13%)

Query: 10  VIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLP 69
           V+++GAG +GL+ +  L    I +V+LE+     S W+   +D   L      C+LP  P
Sbjct: 3   VVIIGAGQAGLSVSYYLKQAGIDHVVLEKHTVAHS-WRDERWDSFCLVTPNWQCRLPGHP 61

Query: 70  FPSSYPM-FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSP 128
           +  + P  F+ + + + +LD Y   FN  P +R    V S     A   + V  S     
Sbjct: 62  YDGTDPDGFMVKDEIVAYLDGYARSFN--PPVREGTEVTSLRKHGAGG-FRVSTS----- 113

Query: 129 GREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEV--IHSTQYKNGK--PY 184
                  ++   +V+A+G    P  P +        +     +V  +HS++Y+N    P 
Sbjct: 114 ----AGAFTADQVVIATGGYHVPVIPPL--------AERLPADVLQLHSSEYRNPDQLPD 161

Query: 185 GGKNVLVVGSGNSGMEIALDL 205
           G   VLVVGSG SG +IA DL
Sbjct: 162 GA--VLVVGSGQSGCQIAEDL 180

Members of this protein family belong to a conserved seven-gene biosynthetic cluster found sparsely in Cyanobacteria, Proteobacteria, and Actinobacteria. Distant homologies to characterized proteins suggest that members are enzymes dependent on a flavinoid cofactor. Length = 400

>gnl|CDD|222355 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase

 Score = 69.3 bits (170), Expect = 5e-14
 Identities = 47/219 (21%), Positives = 81/219 (36%), Gaps = 34/219 (15%)

Query: 13  VGAGTSGLATAACLSLQSI-PYVILERENCYASIWKKYSYDRLRLHLAKQF--------- 62
           VGAG +G+A A  L      P +I++R       W+K+ Y  +RLH    F         
Sbjct: 3   VGAGAAGMAFADHLLDLGDAPVIIVDRGAQPGGHWRKW-YPFVRLHQPSFFYGDFGMPDL 61

Query: 63  --CQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNV 120
               +   P         S A+   +L+     + +   IR    V +   D     + V
Sbjct: 62  NALSIDTSPKWDGKAELASGAEIAAYLEDLARRYGL--PIRLSTRVTAVERDGGR--FVV 117

Query: 121 KASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKN 180
           + ++         E     ++V A+G  + P  P   G  +         E +H      
Sbjct: 118 RLTD--------GETVRADYVVDATGAFSVPKPPGFPGADA---------EGVHLVDVLE 160

Query: 181 GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219
                GK V V+G G++ ++ AL+L +     + + R P
Sbjct: 161 RIDLKGKTVAVIGGGHTAIDAALNLLDLGKDVTWITRRP 199

Length = 202

>gnl|CDD|222125 pfam13434, K_oxygenase, L-lysine 6-monooxygenase (NADPH-requiring)

 Score = 66.4 bits (163), Expect = 2e-12
 Identities = 43/147 (29%), Positives = 63/147 (42%), Gaps = 21/147 (14%)

Query: 77  FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYY 136
           F SR +F ++L    S      ++R+   VE    D++  +  V   +    G E    Y
Sbjct: 91  FPSRREFNDYLQWAASQL---ENVRFGAEVEEVEPDDSGFLLRVHTRD---TGTEQT--Y 142

Query: 137 SGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKP--YGGKNVLVVGS 194
             R LV+ +G  T P+ P+       C+       V HS++Y   KP    GK + VVG 
Sbjct: 143 LARNLVLGTG--TTPYIPE-------CAKPLPGERVFHSSEYLLRKPRLLAGKRITVVGG 193

Query: 195 GNSGMEIALDLAN--HAAKTSLVVRSP 219
           G S  EI LDL       + + V R P
Sbjct: 194 GQSAAEIFLDLLRRQPGYQLTWVTRRP 220

This is family of Rossmann fold oxidoreductases that catalyzes the NADPH-dependent hydroxylation of lysine at the N6 position, EC:1.14.13.59. Length = 335

>gnl|CDD|215116 PLN02172, PLN02172, flavin-containing monooxygenase FMO GS-OX

 Score = 60.6 bits (147), Expect = 3e-10
 Identities = 61/247 (24%), Positives = 99/247 (40%), Gaps = 55/247 (22%)

Query: 10  VIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYS------------------- 50
           V ++GAG +GL  A  L  +    V+ ERE     +W  Y+                   
Sbjct: 13  VAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWV-YTPKSESDPLSLDPTRSIVHS 71

Query: 51  --YDRLRLHLAKQFCQLPHLPF----------PSSYPMFVSRAQFIEHLDHYVSHFNIGP 98
             Y+ LR +L ++       PF             YP   S  + + +L  +   F I  
Sbjct: 72  SVYESLRTNLPRECMGYRDFPFVPRFDDESRDSRRYP---SHREVLAYLQDFAREFKIEE 128

Query: 99  SIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRG 158
            +R++   E    +     W V++ N  S G   +E +    +VV +G  T P    I G
Sbjct: 129 MVRFE--TEVVRVEPVDGKWRVQSKN--SGGFSKDEIFDA--VVVCNGHYTEPNVAHIPG 182

Query: 159 LCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRS 218
           + S+       G+ IHS  Y+   P+  + V+V+G+  SG +I+ D+A         V  
Sbjct: 183 IKSW------PGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAK--------VAK 228

Query: 219 PVHVLSR 225
            VH+ SR
Sbjct: 229 EVHIASR 235

Length = 461

>gnl|CDD|188533 TIGR04018, Bthiol_YpdA, putative bacillithiol system oxidoreductase, YpdA family

 Score = 57.2 bits (139), Expect = 2e-09
 Identities = 57/226 (25%), Positives = 89/226 (39%), Gaps = 60/226 (26%)

Query: 9   EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSY----------DRLRLHL 58
           +VI++GAG  GLA A       + Y+I+E+ N   SI   Y Y          +RL    
Sbjct: 1   DVIIIGAGPCGLACAIEAQKAGLSYLIIEKGNLVNSI---YRYPTNMTFFSTSERL---- 53

Query: 59  AKQFCQLPHLPFPSSYPMFVSRAQFIEHLDHY---VSHFNIGPSIRYQRSVESASYDEAT 115
                ++  +PF S  P    +    E L++Y      F +  +IR    V      +  
Sbjct: 54  -----EIGGIPFISENP----KPTRNEALEYYRRVAERFKL--NIRLYEEVLKVKKTDGG 102

Query: 116 NMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGE---- 171
             + V               Y  + ++VA+G    P   ++             GE    
Sbjct: 103 --FEVTTEKGT---------YQAKNVIVATGYYDIPNLLNV------------PGEDLPK 139

Query: 172 VIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVR 217
           V H   YK   PY G+ V+VVG  NS ++ AL+L    A+ ++V R
Sbjct: 140 VSH--YYKEAHPYFGQKVVVVGGSNSAVDAALELYRKGAEVTMVHR 183

Members of this protein family, including YpdA from Bacillus subtilis, are apparent oxidoreductases present only in species with an active bacillithiol system. They have been suggested actually to be thiol disulfide oxidoreductases (TDOR), although the evidence is incomplete [Unknown function, Enzymes of unknown specificity]. Length = 316

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 55.8 bits (135), Expect = 6e-09
 Identities = 44/214 (20%), Positives = 73/214 (34%), Gaps = 44/214 (20%)

Query: 10  VIMVGAGTSGLATAACLSLQSIPYVILEREN--CYAS--IWKKYSYDRLRLHLAKQFCQL 65
           V+++G G +GLA A  L+   +   ++ERE   CY    + KK   +             
Sbjct: 2   VVIIGGGPAGLAAAIRLARLGLKVALIEREGGTCYNRGCLPKKLLLE------------- 48

Query: 66  PHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNL 125
                       +  A  +   +     F +   +     V      E T         +
Sbjct: 49  -------VAE-GLELAIGLALPEEVYKEFGV--EVLLGTEVVDIDRGEKT---------V 89

Query: 126 LSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYG 185
           +    E     +   L++A+G    P  P I G+            VI S +        
Sbjct: 90  VLKDVETGREITYDKLIIATG--ARPRIPGIPGVEVA-----TLRGVIDSDEILELLELP 142

Query: 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219
            K V+VVG G  G+E+A  LA    + ++V R  
Sbjct: 143 -KRVVVVGGGYIGLELAAALAKLGKEVTVVERRD 175

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 9/84 (10%)

Query: 136 YSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSG 195
           Y  + +++A+G         + G   F       G+ +      +G  + GK+V+V+G G
Sbjct: 102 YEAKAVIIATG--AGARKLGVPGEEEF------EGKGVSYCATCDGF-FKGKDVVVIGGG 152

Query: 196 NSGMEIALDLANHAAKTSLVVRSP 219
           +S +E AL L+  A K +LV R  
Sbjct: 153 DSAVEEALYLSKIAKKVTLVHRRD 176

Length = 305

>gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase

 Score = 40.6 bits (96), Expect = 7e-05
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219
            V+VVG G  G+E A  LA   +K ++V R  
Sbjct: 1   RVVVVGGGYIGLEFASALAKLGSKVTVVERRD 32

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 82

>gnl|CDD|226017 COG3486, IucD, Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 36/135 (26%), Positives = 53/135 (39%), Gaps = 28/135 (20%)

Query: 77  FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVE---SASYDEATNMWNVKASNLLSPGREIE 133
            + R ++ ++     S     PS+R+   V    S   D    ++ V A+          
Sbjct: 94  HIPRREYNDYCQWAASQL---PSLRFGEEVTDISSLDGDAVVRLFVVTANG--------- 141

Query: 134 EYYSGRFLVVASGETTNPFTPD-IRGLCSFCSSATGTGEVIHSTQYKNGKP--YGGKNVL 190
             Y  R LV+  G  T P+ P   R L            V HS++Y    P     ++V 
Sbjct: 142 TVYRARNLVLGVG--TQPYIPPCFRSLIG--------ERVFHSSEYLERHPELLQKRSVT 191

Query: 191 VVGSGNSGMEIALDL 205
           V+GSG S  EI LDL
Sbjct: 192 VIGSGQSAAEIFLDL 206

Length = 436

>gnl|CDD|237942 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional

 Score = 42.1 bits (100), Expect = 3e-04
 Identities = 14/22 (63%), Positives = 17/22 (77%)

Query: 186 GKNVLVVGSGNSGMEIALDLAN 207
           GK V V+G GNSG+E A+DLA 
Sbjct: 351 GKRVAVIGGGNSGVEAAIDLAG 372

Length = 517

>gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 16/34 (47%), Positives = 20/34 (58%)

Query: 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVR 217
           +  K V VVG G+S +E AL L   A K +LV R
Sbjct: 138 FKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHR 171

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070) [Energy metabolism, Electron transport]. Length = 299

>gnl|CDD|234119 TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 15/27 (55%), Positives = 21/27 (77%)

Query: 180 NGKPYGGKNVLVVGSGNSGMEIALDLA 206
           +G  + GK+V V+G GNSG+E A+DLA
Sbjct: 346 DGPFFKGKDVAVIGGGNSGIEAAIDLA 372

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions]. Length = 515

>gnl|CDD|224152 COG1231, COG1231, Monoamine oxidase [Amino acid transport and metabolism]

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 19/92 (20%), Positives = 28/92 (30%), Gaps = 9/92 (9%)

Query: 7  GVEVIMVGAGTSGLATAACLSLQSIPYVILE-RENCYASIWKKYSYDRLRLHLAKQFCQL 65
            +VI+VGAG +GL+ A  L        ILE R+          +       L  Q+   
Sbjct: 7  TADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARAGGE-YTDLGGQYINP 65

Query: 66 PH-------LPFPSSYPMFVSRAQFIEHLDHY 90
           H         F      F+     +      
Sbjct: 66 THDALLAYAKEFGVPLEPFIRDGDNVIGYVGS 97

Length = 450

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	325
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	100.0
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	100.0
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	100.0
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	100.0
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	100.0
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	99.93
PRK10262	321	thioredoxin reductase; Provisional	99.93
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	99.91
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	99.9
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	99.89
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	99.89
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	99.89
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	99.89
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	99.88
PLN02507	499	glutathione reductase	99.88
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	99.87
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	99.87
PRK06116	450	glutathione reductase; Validated	99.87
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	99.86
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	99.86
PRK14694	468	putative mercuric reductase; Provisional	99.86
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	99.85
PRK14727	479	putative mercuric reductase; Provisional	99.85
TIGR02053	463	MerA mercuric reductase. This model represents the	99.84
PTZ00052	499	thioredoxin reductase; Provisional	99.84
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	99.84
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	99.84
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	99.84
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	99.83
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	99.83
PRK06370	463	mercuric reductase; Validated	99.83
PRK13748	561	putative mercuric reductase; Provisional	99.83
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	99.83
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	99.83
PRK13512	438	coenzyme A disulfide reductase; Provisional	99.83
PRK12831	464	putative oxidoreductase; Provisional	99.83
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	99.83
PRK12779	944	putative bifunctional glutamate synthase subunit b	99.82
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	99.82
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	99.82
PRK14989	847	nitrite reductase subunit NirD; Provisional	99.82
PRK07845	466	flavoprotein disulfide reductase; Reviewed	99.81
PTZ00058	561	glutathione reductase; Provisional	99.81
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	99.81
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	99.81
PRK09564	444	coenzyme A disulfide reductase; Reviewed	99.81
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	99.81
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	99.81
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	99.8
PLN02546	558	glutathione reductase	99.8
PRK07846	451	mycothione reductase; Reviewed	99.79
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	99.79
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	99.78
PTZ00153	659	lipoamide dehydrogenase; Provisional	99.77
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	99.77
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	99.77
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	99.76
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	99.76
PLN02852	491	ferredoxin-NADP+ reductase	99.76
PRK12770	352	putative glutamate synthase subunit beta; Provisio	99.75
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	99.75
PRK12814	652	putative NADPH-dependent glutamate synthase small	99.75
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	99.75
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	99.73
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	99.73
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	99.72
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	99.72
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	99.72
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	99.72
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	99.71
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	99.7
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	99.69
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	99.68
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	99.67
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	99.66
PRK09897	534	hypothetical protein; Provisional	99.66
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	99.64
PRK13984	604	putative oxidoreductase; Provisional	99.62
PTZ00188	506	adrenodoxin reductase; Provisional	99.58
PRK06567	1028	putative bifunctional glutamate synthase subunit b	99.58
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	99.58
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	99.57
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	99.57
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	99.51
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	99.47
COG2081	408	Predicted flavoproteins [General function predicti	99.47
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	99.47
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	99.44
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	99.41
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.39
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	99.37
PRK06847	375	hypothetical protein; Provisional	99.35
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	99.34
PRK08244	493	hypothetical protein; Provisional	99.33
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	99.33
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	99.33
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	99.32
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.31
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	99.3
PRK10157	428	putative oxidoreductase FixC; Provisional	99.3
PLN02463	447	lycopene beta cyclase	99.29
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.29
PRK08132	547	FAD-dependent oxidoreductase; Provisional	99.29
PRK06184	502	hypothetical protein; Provisional	99.28
PRK06834	488	hypothetical protein; Provisional	99.27
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	99.27
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.26
PRK08013	400	oxidoreductase; Provisional	99.26
PRK06126	545	hypothetical protein; Provisional	99.26
PRK07190	487	hypothetical protein; Provisional	99.26
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	99.26
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.25
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.24
PRK07045	388	putative monooxygenase; Reviewed	99.22
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	99.22
PRK06185	407	hypothetical protein; Provisional	99.22
PRK10015	429	oxidoreductase; Provisional	99.21
PRK06753	373	hypothetical protein; Provisional	99.21
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	99.21
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.21
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.2
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	99.2
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	99.19
PRK08163	396	salicylate hydroxylase; Provisional	99.18
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	99.18
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	99.17
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	99.16
PRK07538	413	hypothetical protein; Provisional	99.16
PRK07588	391	hypothetical protein; Provisional	99.16
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	99.16
PRK11445	351	putative oxidoreductase; Provisional	99.16
PRK08294	634	phenol 2-monooxygenase; Provisional	99.16
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	99.15
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	99.15
PLN02697	529	lycopene epsilon cyclase	99.14
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.14
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	99.13
PRK09126	392	hypothetical protein; Provisional	99.13
TIGR00275	400	flavoprotein, HI0933 family. The model when search	99.12
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	99.12
PRK07236	386	hypothetical protein; Provisional	99.1
PRK06996	398	hypothetical protein; Provisional	99.09
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	99.07
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.07
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	99.07
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	99.07
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	99.06
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.06
PRK06475	400	salicylate hydroxylase; Provisional	99.06
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	99.06
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	99.05
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.04
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	99.02
PRK05868	372	hypothetical protein; Validated	99.0
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	98.97
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.97
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	98.96
PLN02661	357	Putative thiazole synthesis	98.96
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.96
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.95
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	98.95
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	98.94
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	98.94
PRK11728	393	hydroxyglutarate oxidase; Provisional	98.94
PLN02985	514	squalene monooxygenase	98.91
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.9
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	98.9
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	98.89
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	98.89
PTZ00383	497	malate:quinone oxidoreductase; Provisional	98.88
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.87
PRK13339	497	malate:quinone oxidoreductase; Reviewed	98.87
PRK07121	492	hypothetical protein; Validated	98.87
PRK08274	466	tricarballylate dehydrogenase; Validated	98.87
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	98.86
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	98.84
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	98.83
COG0579	429	Predicted dehydrogenase [General function predicti	98.82
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	98.81
TIGR02053	463	MerA mercuric reductase. This model represents the	98.8
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	98.8
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.79
PRK08275	554	putative oxidoreductase; Provisional	98.79
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	98.79
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	98.79
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	98.78
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.78
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	98.78
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.77
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	98.77
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	98.77
PLN02464	627	glycerol-3-phosphate dehydrogenase	98.77
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	98.75
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	98.74
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	98.73
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.73
PRK12839	572	hypothetical protein; Provisional	98.73
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	98.72
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.72
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	98.72
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	98.72
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.72
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	98.71
PRK07208	479	hypothetical protein; Provisional	98.71
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.7
PRK07804	541	L-aspartate oxidase; Provisional	98.7
PRK05257	494	malate:quinone oxidoreductase; Validated	98.69
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	98.69
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	98.68
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	98.68
PRK13977	576	myosin-cross-reactive antigen; Provisional	98.67
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	98.66
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.66
PRK06175	433	L-aspartate oxidase; Provisional	98.65
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.65
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	98.65
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	98.63
PRK06370	463	mercuric reductase; Validated	98.63
PRK08401	466	L-aspartate oxidase; Provisional	98.63
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.63
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.63
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.62
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	98.62
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.62
PLN02815	594	L-aspartate oxidase	98.61
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.61
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.61
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	98.6
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.59
KOG2755	334	consensus Oxidoreductase [General function predict	98.59
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.59
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	98.58
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	98.58
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.58
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	98.57
PRK06116	450	glutathione reductase; Validated	98.57
PRK09077	536	L-aspartate oxidase; Provisional	98.56
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	98.56
PTZ00367	567	squalene epoxidase; Provisional	98.56
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	98.55
PRK07233	434	hypothetical protein; Provisional	98.55
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	98.55
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.55
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.54
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	98.54
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	98.53
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	98.53
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	98.52
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.52
PRK07846	451	mycothione reductase; Reviewed	98.51
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.51
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	98.51
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	98.51
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	98.49
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	98.49
PRK07395	553	L-aspartate oxidase; Provisional	98.49
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	98.49
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	98.48
PRK11883	451	protoporphyrinogen oxidase; Reviewed	98.48
PRK08071	510	L-aspartate oxidase; Provisional	98.48
PLN02676	487	polyamine oxidase	98.48
PLN02507	499	glutathione reductase	98.47
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.47
PLN02576	496	protoporphyrinogen oxidase	98.46
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.46
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.46
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.46
PRK14727	479	putative mercuric reductase; Provisional	98.45
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	98.45
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	98.45
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.44
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.44
PLN02268	435	probable polyamine oxidase	98.44
PRK14694	468	putative mercuric reductase; Provisional	98.43
PRK12416	463	protoporphyrinogen oxidase; Provisional	98.43
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	98.42
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	98.42
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	98.4
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.39
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	98.39
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	98.39
PRK13748	561	putative mercuric reductase; Provisional	98.38
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	98.38
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	98.38
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	98.36
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	98.36
PLN02568	539	polyamine oxidase	98.35
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	98.34
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.34
PTZ00058	561	glutathione reductase; Provisional	98.33
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	98.33
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.33
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	98.33
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	98.32
PTZ00153	659	lipoamide dehydrogenase; Provisional	98.31
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	98.3
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.29
PTZ00052	499	thioredoxin reductase; Provisional	98.28
COG3349	485	Uncharacterized conserved protein [Function unknow	98.28
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	98.28
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	98.28
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	98.27
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	98.27
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	98.26
PRK07512	513	L-aspartate oxidase; Provisional	98.25
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	98.22
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.22
PRK10262	321	thioredoxin reductase; Provisional	98.18
PLN02546	558	glutathione reductase	98.18
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	98.17
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	98.16
KOG2852	380	consensus Possible oxidoreductase [General functio	98.14
PLN02529	738	lysine-specific histone demethylase 1	98.13
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.1
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.1
COG2907	447	Predicted NAD/FAD-binding protein [General functio	98.05
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	98.01
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	98.01
KOG2853	509	consensus Possible oxidoreductase [General functio	98.01
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	98.0
PLN02328	808	lysine-specific histone demethylase 1 homolog	98.0
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.96
PLN02487	569	zeta-carotene desaturase	97.95
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	97.91
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	97.9
PLN02612	567	phytoene desaturase	97.89
PLN03000	881	amine oxidase	97.89
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	97.88
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	97.87
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	97.86
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	97.82
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	97.79
PLN02976	1713	amine oxidase	97.79
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	97.78
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.76
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	97.74
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.73
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	97.7
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	97.7
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	97.7
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.7
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	97.67
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	97.65
PRK12831	464	putative oxidoreductase; Provisional	97.6
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.58
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	97.5
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.46
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	97.45
PRK02106	560	choline dehydrogenase; Validated	97.43
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	97.43
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.41
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	97.39
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	97.33
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	97.32
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	97.29
COG2081	408	Predicted flavoproteins [General function predicti	97.27
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	97.26
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.22
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	97.22
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.2
COG3573	552	Predicted oxidoreductase [General function predict	97.19
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.17
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	97.12
KOG2960	328	consensus Protein involved in thiamine biosynthesi	97.07
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	97.06
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	96.95
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	96.94
PRK12779	944	putative bifunctional glutamate synthase subunit b	96.9
PLN02785	587	Protein HOTHEAD	96.78
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	96.76
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	96.67
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	96.66
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	96.64
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	96.61
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	96.6
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	96.5
PRK13984	604	putative oxidoreductase; Provisional	96.39
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.31
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	96.29
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	96.28
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	96.26
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	96.26
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	96.21
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	96.2
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	96.17
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.09
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.05
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	96.0
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	95.97
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	95.95
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	95.94
KOG4405	547	consensus GDP dissociation inhibitor [Signal trans	95.93
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.89
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	95.77
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.76
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	95.74
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	95.74
PLN02463	447	lycopene beta cyclase	95.65
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	95.6
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	95.55
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	95.5
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	95.43
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	95.42
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	95.41
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.4
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	95.38
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	95.33
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	95.3
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	95.26
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	95.2
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.19
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.18
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	95.18
PRK06719	157	precorrin-2 dehydrogenase; Validated	95.14
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	95.12
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.12
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	95.09
PTZ00188	506	adrenodoxin reductase; Provisional	95.07
PRK06719	157	precorrin-2 dehydrogenase; Validated	95.05
PRK04148	134	hypothetical protein; Provisional	95.04
PLN02852	491	ferredoxin-NADP+ reductase	94.98
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	94.96
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	94.91
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	94.84
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	94.81
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	94.8
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	94.79
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	94.75
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	94.75
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	94.72
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	94.68
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.68
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	94.66
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	94.66
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	94.59
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	94.57
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	94.49
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	94.46
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	94.44
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	94.44
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.43
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.42
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.35
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.29
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	94.24
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	94.22
PRK07236	386	hypothetical protein; Provisional	94.21
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	94.21
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	94.2
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	94.19
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	94.12
PRK06567	1028	putative bifunctional glutamate synthase subunit b	94.07
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	94.05
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	94.01
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	94.0
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	93.98
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	93.85
PRK06847	375	hypothetical protein; Provisional	93.84
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	93.82
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	93.81
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	93.79
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	93.78
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	93.73
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	93.7
PRK08306	296	dipicolinate synthase subunit A; Reviewed	93.69
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	93.69
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	93.68
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	93.68
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	93.66
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	93.59
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	93.56
PRK05868	372	hypothetical protein; Validated	93.52
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	93.51
PRK08163	396	salicylate hydroxylase; Provisional	93.5
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	93.49
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	93.42
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.39
PRK11883	451	protoporphyrinogen oxidase; Reviewed	93.38
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	93.34
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	93.34
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	93.28
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	93.28
PRK06753	373	hypothetical protein; Provisional	93.23
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	93.22
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	93.22
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	93.22
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	93.19
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	93.17
PRK07417	279	arogenate dehydrogenase; Reviewed	93.12
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.1
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.07
PRK07233	434	hypothetical protein; Provisional	93.07
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	93.06
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	93.06
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	93.04
PRK05562	223	precorrin-2 dehydrogenase; Provisional	93.03
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	93.0
PRK15116	268	sulfur acceptor protein CsdL; Provisional	92.99
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	92.99
PTZ00082	321	L-lactate dehydrogenase; Provisional	92.99

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=100.00  E-value=6.3e-53  Score=396.63  Aligned_cols=296  Identities=30%  Similarity=0.495  Sum_probs=189.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC---------CCCceEeecCCCccCCCCCCCCCCCCCCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY---------SYDRLRLHLAKQFCQLPHLPFPSSYPMFV   78 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~---------~y~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (325)
                      ++|+|||||++||++|++|.+.|+++++||+++.+||+|+..         .|+++..|+++.++.|+++|+|++++.|+
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~   81 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP   81 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence            689999999999999999999999999999999999999853         58999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCC---CCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCC
Q 020533           79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEA---TNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPD  155 (325)
Q Consensus        79 ~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~  155 (325)
                      ++.++.+||++||++|+|..+|+|+++|+++++.++   .++|.|++++..    +..+ -.||+||+|||+++.|++|.
T Consensus        82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g----~~~~-~~fD~VvvatG~~~~P~~P~  156 (531)
T PF00743_consen   82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDG----KEET-EEFDAVVVATGHFSKPNIPE  156 (531)
T ss_dssp             BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTT----EEEE-EEECEEEEEE-SSSCESB--
T ss_pred             CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCC----eEEE-EEeCeEEEcCCCcCCCCCCh
Confidence            999999999999999999999999999999998653   368999886432    3345 67999999999999999995


Q ss_pred             --CCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhH-HH--
Q 020533          156 --IRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV-YL--  230 (325)
Q Consensus       156 --~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~-~~--  230 (325)
                        +||++.|      +|.++||.+|+++..++||+|+|||+|+||+|+|.+++..+++|+++.|++.|++||... ..  
T Consensus       157 ~~~~G~e~F------~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~  230 (531)
T PF00743_consen  157 PSFPGLEKF------KGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPF  230 (531)
T ss_dssp             ---CTGGGH------CSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC----------------
T ss_pred             hhhhhhhcC------CeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccccccccccccccc
Confidence              9999999      999999999999999999999999999999999999999999999999999999999753 11  


Q ss_pred             --------HHHHHhhCCHHHHHHHHHHHHHHHhcCccccCCCCCCCCchhhhhccCceeeeChhhhhhhhCCceEEecCC
Q 020533          231 --------GVVLFKYVPFGWVDTLMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQSEQQN  302 (325)
Q Consensus       231 --------~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~~~~~i  302 (325)
                              ...+.+.+|..+.+.+........+ +...+|+. |...      ..++.|++++++.+.|.+|+|+++++|
T Consensus       231 D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~-~~~~~gl~-p~~~------~~~~~~~ind~l~~~i~~G~i~vk~~I  302 (531)
T PF00743_consen  231 DMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRF-DHENYGLK-PKHR------FFSQHPTINDELPNRIRSGRIKVKPDI  302 (531)
T ss_dssp             ----------------------------------------------------------------------------EE-E
T ss_pred             ccccccccccccccccccccccccccccccccc-cccccccc-cccc------ccccccccccccccccccccccccccc
Confidence                    1112223444333333322222222 23345552 4332      225678999999999999999999999


Q ss_pred             eeeecCceEEeeeccee-cCCC
Q 020533          303 SQIGAQTRTELLLKTWL-GTDT  323 (325)
Q Consensus       303 ~~~~~~~~v~~~dg~~~-~~d~  323 (325)
                      ++|++++ |.|.||+.+ +.|+
T Consensus       303 ~~~~~~~-v~F~DGs~~e~vD~  323 (531)
T PF00743_consen  303 KRFTENS-VIFEDGSTEEDVDV  323 (531)
T ss_dssp             EEE-SSE-EEETTSEEEEE-SE
T ss_pred             ccccccc-cccccccccccccc
Confidence            9999975 679999975 5774

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.9e-43  Score=326.10  Aligned_cols=304  Identities=29%  Similarity=0.422  Sum_probs=239.5

Q ss_pred             CCCCeEEEECCChHHHHHHHHHHhcCCC-eEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHH
Q 020533            5 AAGVEVIMVGAGTSGLATAACLSLQSIP-YVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF   83 (325)
Q Consensus         5 ~~~~~v~IIGaG~~Gl~~a~~L~~~g~~-v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (325)
                      ...+||+|||||++||++|+.|.++|.+ ++||||++.+||+|+.++|++++++.++..+.|+++|++ +...++...++
T Consensus         6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~-~~~~~~~~~~~   84 (443)
T COG2072           6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFR-WDEAFAPFAEI   84 (443)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccC-CcccCCCcccH
Confidence            3568999999999999999999999998 999999999999999999999999999999999999998 55677888889


Q ss_pred             HHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccc
Q 020533           84 IEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC  163 (325)
Q Consensus        84 ~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~  163 (325)
                      .+|+.++++++++..++.+++.|..++++++++.|+|++.++..     .+ +.||+||+|||.++.|++|.|+|.+.| 
T Consensus        85 ~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~-----~~-~~a~~vV~ATG~~~~P~iP~~~G~~~f-  157 (443)
T COG2072          85 KDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGT-----GE-LTADFVVVATGHLSEPYIPDFAGLDEF-  157 (443)
T ss_pred             HHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCe-----ee-EecCEEEEeecCCCCCCCCCCCCccCC-
Confidence            99999999999999999999999999999988899999998743     34 679999999999999999999999999 


Q ss_pred             cCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhH----HHHHHHHhhCC
Q 020533          164 SSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV----YLGVVLFKYVP  239 (325)
Q Consensus       164 ~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~----~~~~~~~~~~p  239 (325)
                           .|.++|+++|++..+++||+|+|||+|+||+|++.+|++.|++||+++|++.+++|+...    .....+...+|
T Consensus       158 -----~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~~~~~~~~~~~~~~~~~~~~~~~  232 (443)
T COG2072         158 -----KGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHILPKPLLGEEVGGRLALRRALP  232 (443)
T ss_pred             -----CceEEchhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCceecccccccchHHHHHHhhhCc
Confidence                 999999999999999999999999999999999999999999999999999999998764    22333334344


Q ss_pred             HHHHHHHHH---HHHHHHhcC-----c-------cccCCCC-CCCCchh--hh---hccCceeeeChhhhhhhhCCceEE
Q 020533          240 FGWVDTLMV---MLSRLVYGD-----L-------SKYGIPK-PREGPFF--MK---AAYGKYPVIDAGTCEKIKSGQIQS  298 (325)
Q Consensus       240 ~~~~~~~~~---~~~~~~~~~-----~-------~~~~~~~-~~~~~~~--~~---~~~~~~~~~~~~~~~~l~~g~v~~  298 (325)
                      ..+......   .+.......     .       .+..+.. .....+.  ..   ...+++...+..++..+..+++.+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~  312 (443)
T COG2072         233 AGWALRRGRVLDALLPGAGYLPAFPAPDKRVEALLRAALRFLVLDAGVREDLGPDYAPGDGRLVPDGDLFEAGASGDVEV  312 (443)
T ss_pred             cceehhhhhhhhhhhhhhcccccCCCchHHHHHhhhhhhhccccccChHhhcCCCCCccccccccccchhhhhhhcccce
Confidence            433211110   000000000     0       0000000 0000000  00   112345778889999999999999


Q ss_pred             ecC-CeeeecCceEEeeecceecCC
Q 020533          299 EQQ-NSQIGAQTRTELLLKTWLGTD  322 (325)
Q Consensus       299 ~~~-i~~~~~~~~v~~~dg~~~~~d  322 (325)
                      ++. |+.+++.+ +....++..+.|
T Consensus       313 ~~~~i~~~~~~~-~~~~~~~~~e~d  336 (443)
T COG2072         313 VTEIIDRFTEGG-ILLDSGREEEAD  336 (443)
T ss_pred             eeccccccCCcc-eecCCCccccce
Confidence            999 88887764 444445545444

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=100.00  E-value=1.1e-39  Score=303.47  Aligned_cols=202  Identities=26%  Similarity=0.439  Sum_probs=183.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC--------------------CCCceEeecCCCccCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY--------------------SYDRLRLHLAKQFCQL   65 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~--------------------~y~~~~~~~~~~~~~~   65 (325)
                      ..++|+|||||++||++|++|++.|++++|||+++.+||.|+..                    .|++++.+.|+..+.|
T Consensus         9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f   88 (461)
T PLN02172          9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY   88 (461)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence            45799999999999999999999999999999999999999652                    4888999999999999


Q ss_pred             CCCCCCCC-------CCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEe
Q 020533           66 PHLPFPSS-------YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSG  138 (325)
Q Consensus        66 ~~~~~~~~-------~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~a  138 (325)
                      +++|++..       .+.||++.++.+||+++++++++..+|+|+++|++++..+  +.|.|++.+..+   ...+ ..|
T Consensus        89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~--~~w~V~~~~~~~---~~~~-~~~  162 (461)
T PLN02172         89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD--GKWRVQSKNSGG---FSKD-EIF  162 (461)
T ss_pred             CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC--CeEEEEEEcCCC---ceEE-EEc
Confidence            99987653       3679999999999999999999998899999999998864  789999875422   1245 689


Q ss_pred             CeEEEcccCCCCCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEec
Q 020533          139 RFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRS  218 (325)
Q Consensus       139 d~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~  218 (325)
                      |+||+|||+++.|++|++||++.|      .|.++|+..|+.+..+++|+|+|||+|+||+|+|.+|+..+.+|++++|+
T Consensus       163 d~VIvAtG~~~~P~~P~ipG~~~f------~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~  236 (461)
T PLN02172        163 DAVVVCNGHYTEPNVAHIPGIKSW------PGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRA  236 (461)
T ss_pred             CEEEEeccCCCCCcCCCCCCcccC------CceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEee
Confidence            999999999999999999999999      99999999999999999999999999999999999999999999999998


Q ss_pred             C
Q 020533          219 P  219 (325)
Q Consensus       219 ~  219 (325)
                      +
T Consensus       237 ~  237 (461)
T PLN02172        237 S  237 (461)
T ss_pred             c
Confidence            6

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.1e-38  Score=291.47  Aligned_cols=200  Identities=35%  Similarity=0.563  Sum_probs=183.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC--------C-CCceEeecCCCccCCCCCCCCCCCCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY--------S-YDRLRLHLAKQFCQLPHLPFPSSYPMF   77 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~--------~-y~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (325)
                      ..+|+|||||+|||++|+.|.+.|+++++|||.+++||+|...        . |..++++.++.++.++++|+++..+.+
T Consensus         6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~~   85 (448)
T KOG1399|consen    6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPRY   85 (448)
T ss_pred             CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCccc
Confidence            4689999999999999999999999999999999999999987        5 999999999999999999999986655


Q ss_pred             -CCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCC
Q 020533           78 -VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDI  156 (325)
Q Consensus        78 -~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~  156 (325)
                       |+..++.+||++||++|+|..+|+|+++|..++...+ +.|.|.+.+..+.   ..+ ..||.|++|||++..|++|.+
T Consensus        86 ~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~-gkW~V~~~~~~~~---~~~-~ifd~VvVctGh~~~P~~P~~  160 (448)
T KOG1399|consen   86 FPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDK-GKWRVTTKDNGTQ---IEE-EIFDAVVVCTGHYVEPRIPQI  160 (448)
T ss_pred             CCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccC-CceeEEEecCCcc---eeE-EEeeEEEEcccCcCCCCCCcC
Confidence             8888999999999999999999999999988877542 7999999876431   246 789999999999977999999


Q ss_pred             CC--ccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEe
Q 020533          157 RG--LCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVR  217 (325)
Q Consensus       157 ~g--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r  217 (325)
                      +|  ++.|      .|.++||.+|+.+..+++|+|+|||+|+||+|++.+++..+.+|+++.+
T Consensus       161 ~g~~~~~f------~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~  217 (448)
T KOG1399|consen  161 PGPGIESF------KGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVV  217 (448)
T ss_pred             CCCchhhc------CCcceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeee
Confidence            88  7799      9999999999999999999999999999999999999999999988876

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=100.00  E-value=1.8e-34  Score=242.26  Aligned_cols=191  Identities=34%  Similarity=0.588  Sum_probs=138.2

Q ss_pred             EEECCChHHHHHHHHHHhcCCC-eEEEecCCCCCCccCCCCCCceEeecCCCc---cCCCCCCCC--------CCCCCCC
Q 020533           11 IMVGAGTSGLATAACLSLQSIP-YVILERENCYASIWKKYSYDRLRLHLAKQF---CQLPHLPFP--------SSYPMFV   78 (325)
Q Consensus        11 ~IIGaG~~Gl~~a~~L~~~g~~-v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~---~~~~~~~~~--------~~~~~~~   78 (325)
                      +||||||+||++|..|.++|.+ ++|||+++.+||.|.. .++..++..+...   +.++.+...        .+...++
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRR-YYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFP   79 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHC-H-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSE
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEE-eCCCCccccCccccccccCCcccccccccCCCCCCCcccC
Confidence            7999999999999999999998 9999999999999984 2333333333222   222221110        0124678


Q ss_pred             CHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCC
Q 020533           79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRG  158 (325)
Q Consensus        79 ~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g  158 (325)
                      +..++.+|++++++++++.  ++++++|+++++++  +.|.|+++++       .+ +.|++||+|||.++.|+.|.+||
T Consensus        80 ~~~~v~~yl~~~~~~~~l~--i~~~~~V~~v~~~~--~~w~v~~~~~-------~~-~~a~~VVlAtG~~~~p~~p~~~g  147 (203)
T PF13738_consen   80 SGEEVLDYLQEYAERFGLE--IRFNTRVESVRRDG--DGWTVTTRDG-------RT-IRADRVVLATGHYSHPRIPDIPG  147 (203)
T ss_dssp             BHHHHHHHHHHHHHHTTGG--EETS--EEEEEEET--TTEEEEETTS--------E-EEEEEEEE---SSCSB---S-TT
T ss_pred             CHHHHHHHHHHHHhhcCcc--cccCCEEEEEEEec--cEEEEEEEec-------ce-eeeeeEEEeeeccCCCCcccccc
Confidence            9999999999999999987  59999999999986  5599999875       57 89999999999989999999999


Q ss_pred             ccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCee
Q 020533          159 LCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHV  222 (325)
Q Consensus       159 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~  222 (325)
                       ..+       ...+|+.++.+...+++|+|+|||+|+||+|++..|++.|.+|++++|+|.|+
T Consensus       148 -~~~-------~~~~h~~~~~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~~~  203 (203)
T PF13738_consen  148 -SAF-------RPIIHSADWRDPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPIWY  203 (203)
T ss_dssp             -GGC-------SEEEEGGG-STTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS----
T ss_pred             -ccc-------cceEehhhcCChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCCCC
Confidence             333       37899999998889999999999999999999999999999999999999774

...

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=99.93  E-value=5.4e-24  Score=189.25  Aligned_cols=175  Identities=25%  Similarity=0.378  Sum_probs=137.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHHH
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHL   87 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl   87 (325)
                      +||+|||||++||++|..|++.|++|+|||+++ .||.|....          ....++.+      +...+..++.+++
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~----------~~~~~~~~------~~~~~~~~~~~~l   63 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTTT----------EVENYPGF------PEGISGPELMEKM   63 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeecc----------cccccCCC------CCCCChHHHHHHH
Confidence            589999999999999999999999999999987 677654321          01111111      1224556899999


Q ss_pred             HHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccCCC
Q 020533           88 DHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSAT  167 (325)
Q Consensus        88 ~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~~~  167 (325)
                      .+.++++++..  ++ ++|++++.++  +.|.|++.++       .+ +.||+||+|||  +.|..|.+||.+.|     
T Consensus        64 ~~~~~~~gv~~--~~-~~v~~v~~~~--~~~~v~~~~~-------~~-~~~d~liiAtG--~~~~~~~i~g~~~~-----  123 (300)
T TIGR01292        64 KEQAVKFGAEI--IY-EEVIKVDLSD--RPFKVKTGDG-------KE-YTAKAVIIATG--ASARKLGIPGEDEF-----  123 (300)
T ss_pred             HHHHHHcCCeE--EE-EEEEEEEecC--CeeEEEeCCC-------CE-EEeCEEEECCC--CCcccCCCCChhhc-----
Confidence            99999998664  66 8899998754  6788887643       56 89999999999  56788889998777     


Q ss_pred             CCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533          168 GTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       168 ~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                       .+..++.....+....++++|+|||+|.+|+|+|..|++.+.+|+++.|.+.
T Consensus       124 -~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~  175 (300)
T TIGR01292       124 -LGRGVSYCATCDGPFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDK  175 (300)
T ss_pred             -CCccEEEeeecChhhcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcc
Confidence             5666665544444556789999999999999999999999999999999873

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK10262 thioredoxin reductase; Provisional

Probab=99.93  E-value=5.3e-24  Score=191.23  Aligned_cols=177  Identities=18%  Similarity=0.302  Sum_probs=138.2

Q ss_pred             CCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHH
Q 020533            5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI   84 (325)
Q Consensus         5 ~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (325)
                      ...+||+||||||+||++|..|+++|+++++||+. ..||.+...          ...+.++.     . +...+.+++.
T Consensus         4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~~----------~~~~~~~~-----~-~~~~~~~~~~   66 (321)
T PRK10262          4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTT----------TEVENWPG-----D-PNDLTGPLLM   66 (321)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceecC----------ceECCCCC-----C-CCCCCHHHHH
Confidence            35689999999999999999999999999999965 567764421          01111111     1 2335667889


Q ss_pred             HHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCcccccc
Q 020533           85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS  164 (325)
Q Consensus        85 ~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~  164 (325)
                      +++.+.+..++...  +++ +|.+++..+  +.|+++...        .. +.||+||+|||  +.|+.|++||.+.|  
T Consensus        67 ~~~~~~~~~~~~~~--~~~-~v~~v~~~~--~~~~v~~~~--------~~-~~~d~vilAtG--~~~~~~~i~g~~~~--  128 (321)
T PRK10262         67 ERMHEHATKFETEI--IFD-HINKVDLQN--RPFRLTGDS--------GE-YTCDALIIATG--ASARYLGLPSEEAF--  128 (321)
T ss_pred             HHHHHHHHHCCCEE--Eee-EEEEEEecC--CeEEEEecC--------CE-EEECEEEECCC--CCCCCCCCCCHHHc--
Confidence            99999999887643  554 566777654  678776532        35 88999999999  66888999998888  


Q ss_pred             CCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533          165 SATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       165 ~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                          .+..+|.+.+.+.....+++|+|||+|.+|+|+|..|++.+.+|+++.|++.
T Consensus       129 ----~~~~v~~~~~~~~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~  180 (321)
T PRK10262        129 ----KGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG  180 (321)
T ss_pred             ----CCCcEEEeecCCHHHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCc
Confidence                7777888777766667899999999999999999999999999999999873

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=1.9e-22  Score=177.26  Aligned_cols=173  Identities=24%  Similarity=0.395  Sum_probs=135.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCC-eEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIP-YVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~-v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      .+||+||||||+||+||.++.+.+.+ ++|+|+. ..||....      ..       ....+|   .++.-.+..++.+
T Consensus         3 ~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~-~~gg~~~~------~~-------~venyp---g~~~~~~g~~L~~   65 (305)
T COG0492           3 IYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGG-EPGGQLTK------TT-------DVENYP---GFPGGILGPELME   65 (305)
T ss_pred             eeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecC-CcCCcccc------ce-------eecCCC---CCccCCchHHHHH
Confidence            58999999999999999999999999 5555554 45532111      00       011111   1122346778888


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~  165 (325)
                      -+.+.++.++...  .. ..|.+++...  ..|.|++.+        .+ +++++||+|||  ..++.|.+||.++|   
T Consensus        66 ~~~~~a~~~~~~~--~~-~~v~~v~~~~--~~F~v~t~~--------~~-~~ak~vIiAtG--~~~~~~~~~~e~e~---  126 (305)
T COG0492          66 QMKEQAEKFGVEI--VE-DEVEKVELEG--GPFKVKTDK--------GT-YEAKAVIIATG--AGARKLGVPGEEEF---  126 (305)
T ss_pred             HHHHHHhhcCeEE--EE-EEEEEEeecC--ceEEEEECC--------Ce-EEEeEEEECcC--CcccCCCCCcchhh---
Confidence            8999999888763  33 6777777654  278888887        45 89999999999  66777888888888   


Q ss_pred             CCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          166 ATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       166 ~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                         .|+.+|.+..++. .+++|+|+|||+|+||+|-|..|++.+.+||+++|++
T Consensus       127 ---~g~gv~yc~~cdg-~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~  176 (305)
T COG0492         127 ---EGKGVSYCATCDG-FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRD  176 (305)
T ss_pred             ---cCCceEEeeecCc-cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCc
Confidence               8999999999887 8999999999999999999999999999999999998

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=99.90  E-value=1.6e-22  Score=192.48  Aligned_cols=176  Identities=19%  Similarity=0.269  Sum_probs=142.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      ..+||+||||||+|+++|.+|++.|++++|+++.  +||.|... +            .+..++   . ..+....++.+
T Consensus       210 ~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~-~------------~~~~~~---~-~~~~~~~~l~~  270 (517)
T PRK15317        210 DPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDT-M------------GIENFI---S-VPETEGPKLAA  270 (517)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeecc-C------------cccccC---C-CCCCCHHHHHH
Confidence            4689999999999999999999999999999864  88887531 0            111111   0 12356779999


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~  165 (325)
                      ++.+.++++++..  +++++|.+++..+  +.|.|++.++       .+ +.+|.||+|||  +.|+.|++||.+.|   
T Consensus       271 ~l~~~~~~~gv~i--~~~~~V~~I~~~~--~~~~V~~~~g-------~~-i~a~~vViAtG--~~~r~~~ipG~~~~---  333 (517)
T PRK15317        271 ALEEHVKEYDVDI--MNLQRASKLEPAA--GLIEVELANG-------AV-LKAKTVILATG--ARWRNMNVPGEDEY---  333 (517)
T ss_pred             HHHHHHHHCCCEE--EcCCEEEEEEecC--CeEEEEECCC-------CE-EEcCEEEECCC--CCcCCCCCCCHHHh---
Confidence            9999999998665  8899999998864  6788887553       46 89999999999  56777889998888   


Q ss_pred             CCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533          166 ATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       166 ~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                         .+..+|.....+...+++|+|+|||+|++|+|+|..|+..+.+|+++.|.+.
T Consensus       334 ---~~~~v~~~~~~~~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~  385 (517)
T PRK15317        334 ---RNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPE  385 (517)
T ss_pred             ---cCceEEEeeccCchhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcc
Confidence               7777777655555567899999999999999999999999999999999873

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=99.89  E-value=7e-23  Score=183.76  Aligned_cols=207  Identities=27%  Similarity=0.399  Sum_probs=131.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcC-CCeEEEecCCCCCCccCCCC-CCceEeecC--CCccCCCCCCCCCCC--------
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQS-IPYVILERENCYASIWKKYS-YDRLRLHLA--KQFCQLPHLPFPSSY--------   74 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g-~~v~v~e~~~~~Gg~w~~~~-y~~~~~~~~--~~~~~~~~~~~~~~~--------   74 (325)
                      .+|+++||.||++|++|..|.+.+ .++..||+.+.+  .|...+ .++.+++++  +.+..+.+-.-+..+        
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f--~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~   79 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF--SWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHG   79 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS----TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC--CcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcC
Confidence            379999999999999999999986 899999998864  477543 456555544  222122111111111        


Q ss_pred             ---------CCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCC--CcEEEEEeecCCCCceeEEEEEeCeEEE
Q 020533           75 ---------PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEAT--NMWNVKASNLLSPGREIEEYYSGRFLVV  143 (325)
Q Consensus        75 ---------~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~--~~~~v~~~~~~~~~~~~~~~~~ad~vIi  143 (325)
                               ..+|++.++.+|+++.+++++..  ++|+++|++|++....  ..|.|++.+..+   .... +.|+.||+
T Consensus        80 rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~--v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g---~~~~-~~ar~vVl  153 (341)
T PF13434_consen   80 RLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQ--VRYGSEVTSIEPDDDGDEDLFRVTTRDSDG---DGET-YRARNVVL  153 (341)
T ss_dssp             -HHHHHHH--SS-BHHHHHHHHHHHHCCGTTT--EEESEEEEEEEEEEETTEEEEEEEEEETTS----EEE-EEESEEEE
T ss_pred             ChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCc--eEECCEEEEEEEecCCCccEEEEEEeecCC---CeeE-EEeCeEEE
Confidence                     15689999999999999999743  5999999999987643  359999975332   2267 99999999


Q ss_pred             cccCCCCCCCCCCCCccccccCCCCCccEEecCCCCCC--CCCCCCeEEEECcCCCHHHHHHHHhhccC--eEEEEEecC
Q 020533          144 ASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNG--KPYGGKNVLVVGSGNSGMEIALDLANHAA--KTSLVVRSP  219 (325)
Q Consensus       144 AtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~v~VvG~G~s~~e~a~~l~~~~~--~v~~~~r~~  219 (325)
                      |+|  ..|.+|+.......      ...++|++++...  ...++++|+|||+|.||+|++..|.+.+.  +|+++.|++
T Consensus       154 a~G--~~P~iP~~~~~~~~------~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~  225 (341)
T PF13434_consen  154 ATG--GQPRIPEWFQDLPG------SPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSP  225 (341)
T ss_dssp             ------EE---GGGGGGTT-------TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSS
T ss_pred             CcC--CCCCCCcchhhcCC------CCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCC
Confidence            999  78888864322112      3689999988664  35678999999999999999999999875  799999999


Q ss_pred             CeeechhhHHH
Q 020533          220 VHVLSREMVYL  230 (325)
Q Consensus       220 ~~~~p~~~~~~  230 (325)
                       .+.|.++..+
T Consensus       226 -~~~~~d~s~f  235 (341)
T PF13434_consen  226 -GFFPMDDSPF  235 (341)
T ss_dssp             -S-EB----CC
T ss_pred             -ccCCCccccc
Confidence             6778776544

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=99.89  E-value=1.7e-21  Score=185.15  Aligned_cols=175  Identities=19%  Similarity=0.294  Sum_probs=135.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      ..+||+||||||+|+++|..|++.|.+++|+|.  .+||.+... .         .+..+...       .+....++.+
T Consensus       211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~~~-~---------~~~~~~~~-------~~~~~~~l~~  271 (515)
T TIGR03140       211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVKDT-V---------GIENLISV-------PYTTGSQLAA  271 (515)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccccC-c---------Cccccccc-------CCCCHHHHHH
Confidence            458999999999999999999999999999975  588876531 0         00001000       1235678889


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~  165 (325)
                      ++.+.++++++..  +.+++|.+++.++  +.|.+++.++       .. +.||++|+|||  +.|+.|++||.+.+   
T Consensus       272 ~l~~~l~~~gv~i--~~~~~V~~I~~~~--~~~~v~~~~g-------~~-i~~d~lIlAtG--a~~~~~~ipG~~~~---  334 (515)
T TIGR03140       272 NLEEHIKQYPIDL--MENQRAKKIETED--GLIVVTLESG-------EV-LKAKSVIVATG--ARWRKLGVPGEKEY---  334 (515)
T ss_pred             HHHHHHHHhCCeE--EcCCEEEEEEecC--CeEEEEECCC-------CE-EEeCEEEECCC--CCcCCCCCCCHHHc---
Confidence            9999998888655  8899999998654  5688877543       46 89999999999  55777889997666   


Q ss_pred             CCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          166 ATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       166 ~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                         .+..++.....+.....+++|+|||+|++|+|+|..|+..+.+||++.+.+
T Consensus       335 ---~~~~v~~~~~~~~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~  385 (515)
T TIGR03140       335 ---IGKGVAYCPHCDGPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFAD  385 (515)
T ss_pred             ---CCCeEEEeeccChhhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCC
Confidence               555555544444344568999999999999999999999999999999887

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=99.89  E-value=9e-22  Score=188.47  Aligned_cols=174  Identities=21%  Similarity=0.386  Sum_probs=135.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      .|||+||||||+||++|..|++.|++|+|||++ .+||.+....             ....++  .  ....+..++.++
T Consensus         4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~~~-------------~i~~~p--g--~~~~~~~~l~~~   65 (555)
T TIGR03143         4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITITS-------------EVVNYP--G--ILNTTGPELMQE   65 (555)
T ss_pred             cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEecc-------------ccccCC--C--CcCCCHHHHHHH
Confidence            589999999999999999999999999999996 5777654210             000111  0  022456788899


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA  166 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~~  166 (325)
                      +.+.++++++.   .++++|.+++.++  ..+.|.+.+        .. +.+++||+|||  +.|+.|++||.+.+    
T Consensus        66 l~~~~~~~gv~---~~~~~V~~i~~~~--~~~~V~~~~--------g~-~~a~~lVlATG--a~p~~~~ipG~~~~----  125 (555)
T TIGR03143        66 MRQQAQDFGVK---FLQAEVLDVDFDG--DIKTIKTAR--------GD-YKTLAVLIATG--ASPRKLGFPGEEEF----  125 (555)
T ss_pred             HHHHHHHcCCE---EeccEEEEEEecC--CEEEEEecC--------CE-EEEeEEEECCC--CccCCCCCCCHHHh----
Confidence            99999998865   3578888887653  456676643        35 78899999999  67888999998777    


Q ss_pred             CCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533          167 TGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       167 ~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                        .+..++.+...+...+.+++|+|||+|.+|+|+|..|++.|.+|+++.|.+.
T Consensus       126 --~~~~v~~~~~~~~~~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~  177 (555)
T TIGR03143       126 --TGRGVAYCATCDGEFFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD  177 (555)
T ss_pred             --CCceEEEEeecChhhcCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence              6766766555554556799999999999999999999999999999999884

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=99.89  E-value=7.5e-22  Score=185.83  Aligned_cols=201  Identities=14%  Similarity=0.163  Sum_probs=126.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC-CCCCceEeecCC-CccCCCCCC-C-CCCCCCCCCHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAK-QFCQLPHLP-F-PSSYPMFVSRA   81 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~-~~y~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~   81 (325)
                      .++||+||||||+|+.+|..|++.|.+|+|||+++.+||+|.. .+.|+..+.... .+..+...+ + ........+..
T Consensus         4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (461)
T PRK05249          4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITFA   83 (461)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCHH
Confidence            3589999999999999999999999999999999889998854 333332111000 000000000 0 00001122344


Q ss_pred             HHHHH-----------HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533           82 QFIEH-----------LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (325)
Q Consensus        82 ~~~~y-----------l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~  150 (325)
                      ++.++           +...+++.++..  +.+ ++..++    .+.+.|...++     +... +++|+||+|||  +.
T Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~~~~v~~--~~g-~~~~~~----~~~~~v~~~~g-----~~~~-~~~d~lviATG--s~  148 (461)
T PRK05249         84 DLLARADHVINKQVEVRRGQYERNRVDL--IQG-RARFVD----PHTVEVECPDG-----EVET-LTADKIVIATG--SR  148 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCEE--EEE-EEEEec----CCEEEEEeCCC-----ceEE-EEcCEEEEcCC--CC
Confidence            44443           333344445432  333 233332    24566665432     1247 89999999999  77


Q ss_pred             CCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHHH
Q 020533          151 PFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYL  230 (325)
Q Consensus       151 p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~~  230 (325)
                      |..|++++.+.        ..++++..... ....+++++|||+|.+|+|+|..+++.|.+|+++.|++ .++|..+.++
T Consensus       149 p~~p~~~~~~~--------~~v~~~~~~~~-~~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~~~  218 (461)
T PRK05249        149 PYRPPDVDFDH--------PRIYDSDSILS-LDHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRD-RLLSFLDDEI  218 (461)
T ss_pred             CCCCCCCCCCC--------CeEEcHHHhhc-hhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CcCCcCCHHH
Confidence            88887665432        13444443333 23357999999999999999999999999999999998 5666554444


Q ss_pred             H
Q 020533          231 G  231 (325)
Q Consensus       231 ~  231 (325)
                      .
T Consensus       219 ~  219 (461)
T PRK05249        219 S  219 (461)
T ss_pred             H
Confidence            3

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.88  E-value=1.8e-21  Score=183.22  Aligned_cols=196  Identities=19%  Similarity=0.236  Sum_probs=122.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccC-CCCCCceEeecCCCccC----CCCCCCCCCCCCCCCH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHLAKQFCQ----LPHLPFPSSYPMFVSR   80 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~-~~~y~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~   80 (325)
                      ..|||+||||||+|+++|..|++.|.+|+|+|+.. +||+|. ..+.|+..+......+.    ...+.+... ......
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~-~~~~~~   80 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAE-NVGIDF   80 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccC-CCccCH
Confidence            46899999999999999999999999999999987 899774 44555432221111110    011111100 112355


Q ss_pred             HHHHHHHHHH-----------HHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533           81 AQFIEHLDHY-----------VSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (325)
Q Consensus        81 ~~~~~yl~~~-----------a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~  149 (325)
                      .++.+|....           +++.++..  +.+ ++..++    ...++|...++  +    .. ++||+||+|||  +
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~--~~g-~~~~~~----~~~~~v~~~~~--~----~~-~~~d~lViAtG--s  144 (462)
T PRK06416         81 KKVQEWKNGVVNRLTGGVEGLLKKNKVDI--IRG-EAKLVD----PNTVRVMTEDG--E----QT-YTAKNIILATG--S  144 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEE-EEEEcc----CCEEEEecCCC--c----EE-EEeCEEEEeCC--C
Confidence            6666664443           33344332  333 333332    23344543221  1    56 89999999999  5


Q ss_pred             CCCCCCCCCccccccCCCCCccEE-ecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhH
Q 020533          150 NPFTPDIRGLCSFCSSATGTGEVI-HSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV  228 (325)
Q Consensus       150 ~p~~p~~~g~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~  228 (325)
                      .|..|  ||.+.       .+..+ ++.+... ....+++++|||+|.+|+|+|..+++.|.+||++.|.+ .++|..+.
T Consensus       145 ~p~~~--pg~~~-------~~~~v~~~~~~~~-~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~~~  213 (462)
T PRK06416        145 RPREL--PGIEI-------DGRVIWTSDEALN-LDEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALP-RILPGEDK  213 (462)
T ss_pred             CCCCC--CCCCC-------CCCeEEcchHhhC-ccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-CcCCcCCH
Confidence            66543  45542       33333 3333322 22346899999999999999999999999999999998 56665443


Q ss_pred             HH
Q 020533          229 YL  230 (325)
Q Consensus       229 ~~  230 (325)
                      .+
T Consensus       214 ~~  215 (462)
T PRK06416        214 EI  215 (462)
T ss_pred             HH
Confidence            33

>PLN02507 glutathione reductase

Probab=99.88  E-value=1.8e-21  Score=184.01  Aligned_cols=197  Identities=15%  Similarity=0.141  Sum_probs=122.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEec---------CCCCCCccC-CCCCCceEeecCCCcc----CCCCCCCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILER---------ENCYASIWK-KYSYDRLRLHLAKQFC----QLPHLPFPS   72 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~---------~~~~Gg~w~-~~~y~~~~~~~~~~~~----~~~~~~~~~   72 (325)
                      +|||+||||||+|+.+|..+++.|.+|+|+|+         .+.+||+|. ..++|+..+......+    ....+....
T Consensus        25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~~~  104 (499)
T PLN02507         25 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGWEI  104 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCccc
Confidence            58999999999999999999999999999996         356899874 3555543331111110    000010000


Q ss_pred             CCCCCCCHHHHHHHHHH-----------HHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeE
Q 020533           73 SYPMFVSRAQFIEHLDH-----------YVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFL  141 (325)
Q Consensus        73 ~~~~~~~~~~~~~yl~~-----------~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~v  141 (325)
                      ....-....++.+++..           .....++.   .+..++..++    ...+.|+..++     +..+ +.||+|
T Consensus       105 ~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~---~i~g~a~~vd----~~~v~V~~~~g-----~~~~-~~~d~L  171 (499)
T PLN02507        105 NEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVK---LYEGEGKIVG----PNEVEVTQLDG-----TKLR-YTAKHI  171 (499)
T ss_pred             CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcE---EEEEEEEEec----CCEEEEEeCCC-----cEEE-EEcCEE
Confidence            00001233343433322           23333432   2223333332    24566765543     2246 899999


Q ss_pred             EEcccCCCCCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCe
Q 020533          142 VVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVH  221 (325)
Q Consensus       142 IiAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~  221 (325)
                      |+|||  +.|..|.+||.+..          .++.+... ....+++++|||+|.+|+|+|..++..|.+|+++.|.+ .
T Consensus       172 IIATG--s~p~~p~ipG~~~~----------~~~~~~~~-l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~-~  237 (499)
T PLN02507        172 LIATG--SRAQRPNIPGKELA----------ITSDEALS-LEELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKE-L  237 (499)
T ss_pred             EEecC--CCCCCCCCCCccce----------echHHhhh-hhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecC-C
Confidence            99999  78888888886432          22222211 12236899999999999999999999999999999988 4


Q ss_pred             eechhhHHH
Q 020533          222 VLSREMVYL  230 (325)
Q Consensus       222 ~~p~~~~~~  230 (325)
                      ++|..+.++
T Consensus       238 ~l~~~d~~~  246 (499)
T PLN02507        238 PLRGFDDEM  246 (499)
T ss_pred             cCcccCHHH
Confidence            555444433

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=99.87  E-value=3.5e-21  Score=180.20  Aligned_cols=192  Identities=17%  Similarity=0.248  Sum_probs=117.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC-CCCCceEeecCCCc----cCCCCCCCCCCCCCCCCHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQF----CQLPHLPFPSSYPMFVSRA   81 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~-~~y~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~   81 (325)
                      +|||+||||||+|+.+|..|++.|.+|+|+|+. .+||+|.. .+.|+..+......    .....+..+..........
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   80 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWP   80 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-ccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHH
Confidence            589999999999999999999999999999996 58997753 34443211110000    0001111110000011222


Q ss_pred             HHHHH-----------HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533           82 QFIEH-----------LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (325)
Q Consensus        82 ~~~~y-----------l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~  150 (325)
                      ++.++           +...+++.++..  +.++.+    ..+ .+  +|.+..        .. +.||+||+|||  +.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~--~~g~~~----~~~-~~--~v~v~~--------~~-~~~d~vIiAtG--s~  140 (450)
T TIGR01421        81 ELKEKRDAYVDRLNGIYQKNLEKNKVDV--IFGHAR----FTK-DG--TVEVNG--------RD-YTAPHILIATG--GK  140 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEEEEE----Ecc-CC--EEEECC--------EE-EEeCEEEEecC--CC
Confidence            33333           233333444332  554432    111 12  344421        56 89999999999  77


Q ss_pred             CCCC-CCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHH
Q 020533          151 PFTP-DIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVY  229 (325)
Q Consensus       151 p~~p-~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~  229 (325)
                      |..| ++||.+..          +.+..+.. ....+++++|||+|.+|+|+|..++..|.+||++.|.+ .++|..+..
T Consensus       141 p~~p~~i~g~~~~----------~~~~~~~~-~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~-~il~~~d~~  208 (450)
T TIGR01421       141 PSFPENIPGAELG----------TDSDGFFA-LEELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHE-RVLRSFDSM  208 (450)
T ss_pred             CCCCCCCCCCcee----------EcHHHhhC-ccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CCCcccCHH
Confidence            8888 78886531          12222211 11236899999999999999999999999999999998 455655444


Q ss_pred             HH
Q 020533          230 LG  231 (325)
Q Consensus       230 ~~  231 (325)
                      +.
T Consensus       209 ~~  210 (450)
T TIGR01421       209 IS  210 (450)
T ss_pred             HH
Confidence            43

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=99.87  E-value=1.4e-21  Score=180.02  Aligned_cols=206  Identities=17%  Similarity=0.210  Sum_probs=136.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccC-CCCCCceEeecCCCcc-CCCCC--CCCCCCCC-CCCH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHLAKQFC-QLPHL--PFPSSYPM-FVSR   80 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~-~~~y~~~~~~~~~~~~-~~~~~--~~~~~~~~-~~~~   80 (325)
                      ..||++|||+||+|..+|.++++.|.+++++|+...+||++- ..+.|+..+......+ .+...  .+...... -.+.
T Consensus         3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id~   82 (454)
T COG1249           3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKIDF   82 (454)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcCH
Confidence            469999999999999999999999999999999988999874 3444443222111111 00000  00000000 1233


Q ss_pred             HHHHHHHHH-----------HHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533           81 AQFIEHLDH-----------YVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (325)
Q Consensus        81 ~~~~~yl~~-----------~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~  149 (325)
                      .++.+..++           ..+..++..  ..+ +.   +..   +..+|.+... +.    .+ ++++++|+|||  +
T Consensus        83 ~~~~~~k~~v~~~~~~~~~~l~~~~~V~v--i~G-~a---~f~---~~~~v~V~~~-~~----~~-~~a~~iiIATG--S  145 (454)
T COG1249          83 EKLLARKDKVVRLLTGGVEGLLKKNGVDV--IRG-EA---RFV---DPHTVEVTGE-DK----ET-ITADNIIIATG--S  145 (454)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHhhCCCEE--EEE-EE---EEC---CCCEEEEcCC-Cc----eE-EEeCEEEEcCC--C
Confidence            333333333           333333321  111 11   111   1233544443 11    67 99999999999  8


Q ss_pred             CCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHH
Q 020533          150 NPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVY  229 (325)
Q Consensus       150 ~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~  229 (325)
                      +|..|+++|++..        .++.+.+..... .-+++++|||+|.+|+|+|..++++|.+||+++|++ .+||..+.+
T Consensus       146 ~p~~~~~~~~~~~--------~~~~s~~~l~~~-~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~-~iLp~~D~e  215 (454)
T COG1249         146 RPRIPPGPGIDGA--------RILDSSDALFLL-ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGD-RILPGEDPE  215 (454)
T ss_pred             CCcCCCCCCCCCC--------eEEechhhcccc-cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CCCCcCCHH
Confidence            9999999988753        355555544434 567999999999999999999999999999999999 899999998


Q ss_pred             HHHHHHhhC
Q 020533          230 LGVVLFKYV  238 (325)
Q Consensus       230 ~~~~~~~~~  238 (325)
                      ++..+.+.+
T Consensus       216 i~~~~~~~l  224 (454)
T COG1249         216 ISKELTKQL  224 (454)
T ss_pred             HHHHHHHHH
Confidence            887665544

>PRK06116 glutathione reductase; Validated

Probab=99.87  E-value=4.1e-21  Score=180.20  Aligned_cols=188  Identities=21%  Similarity=0.231  Sum_probs=117.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC-CCCCceEeecCCCcc----C-CCCCCCCCCCCCCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQFC----Q-LPHLPFPSSYPMFVS   79 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~-~~y~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~   79 (325)
                      .++||+||||||+|+++|..|+++|.+|+|+|+. .+||+|.. .+.|+..+.......    . ...+.+... .....
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~-~~~~~   80 (450)
T PRK06116          3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVT-ENKFD   80 (450)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCC-CCCcC
Confidence            3589999999999999999999999999999996 78998743 333332111000000    0 000000000 00112


Q ss_pred             HHHHHHH-----------HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCC
Q 020533           80 RAQFIEH-----------LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET  148 (325)
Q Consensus        80 ~~~~~~y-----------l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~  148 (325)
                      ..++.++           +.+...+.++..  ..+ ++..++      ..+|++ ++       .+ ++||+||+|||  
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~--~~g-~~~~v~------~~~v~~-~g-------~~-~~~d~lViATG--  140 (450)
T PRK06116         81 WAKLIANRDAYIDRLHGSYRNGLENNGVDL--IEG-FARFVD------AHTVEV-NG-------ER-YTADHILIATG--  140 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEE-EEEEcc------CCEEEE-CC-------EE-EEeCEEEEecC--
Confidence            2233222           233344445432  333 344332      134555 22       57 89999999999  


Q ss_pred             CCCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhh
Q 020533          149 TNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREM  227 (325)
Q Consensus       149 ~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~  227 (325)
                      +.|..|++||.+..          +++..... ....+++|+|||+|.+|+|+|..+++.|.+|+++.|.+ .+++...
T Consensus       141 s~p~~p~i~g~~~~----------~~~~~~~~-~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~~~  207 (450)
T PRK06116        141 GRPSIPDIPGAEYG----------ITSDGFFA-LEELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGD-APLRGFD  207 (450)
T ss_pred             CCCCCCCCCCccee----------EchhHhhC-ccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CCccccC
Confidence            77888888886532          33332222 12246899999999999999999999999999999988 4555433

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=99.86  E-value=2e-20  Score=175.14  Aligned_cols=190  Identities=15%  Similarity=0.160  Sum_probs=119.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC-CCCCceEeecCCCc----cCCCCCCCCCCCCCCCCH-
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQF----CQLPHLPFPSSYPMFVSR-   80 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~-~~y~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-   80 (325)
                      +|||+||||||+|+++|..+++.|.+|+|+|+. .+||++.. .+.|+..+......    .....+..... ..-... 
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~~   79 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVG-KARFDWK   79 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCC-CCCcCHH
Confidence            589999999999999999999999999999995 78998753 34443321111000    00011110000 001111 


Q ss_pred             ----------HHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533           81 ----------AQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (325)
Q Consensus        81 ----------~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~  150 (325)
                                .++.++++..+++.++..  .. .++..++.    ....+. .+   +    .. +++|+||+|||  +.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~l~~~gV~~--~~-g~~~~v~~----~~v~v~-~~---g----~~-~~~d~lIiATG--s~  141 (446)
T TIGR01424        80 KLLQKKDDEIARLSGLYKRLLANAGVEL--LE-GRARLVGP----NTVEVL-QD---G----TT-YTAKKILIAVG--GR  141 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCcEE--EE-EEEEEecC----CEEEEe-cC---C----eE-EEcCEEEEecC--Cc
Confidence                      233344555555666542  33 35555532    233332 11   1    56 89999999999  78


Q ss_pred             CCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhH
Q 020533          151 PFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV  228 (325)
Q Consensus       151 p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~  228 (325)
                      |..|++||.+..          +.+.+... ....+++++|||+|.+|+|+|..+++.|.+|+++.+.+ .++|..+.
T Consensus       142 p~~p~i~G~~~~----------~~~~~~~~-l~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~-~~l~~~d~  207 (446)
T TIGR01424       142 PQKPNLPGHELG----------ITSNEAFH-LPTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGE-LILRGFDD  207 (446)
T ss_pred             CCCCCCCCccce----------echHHhhc-ccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCC-CCCcccCH
Confidence            888889886531          11111111 11247899999999999999999999999999999988 45554433

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.86  E-value=2.4e-20  Score=174.48  Aligned_cols=185  Identities=17%  Similarity=0.181  Sum_probs=118.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC-CCCccCC-CCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC-YASIWKK-YSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI   84 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~-~Gg~w~~-~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (325)
                      ++||+||||||+|+++|..|++.|.+|+|+|+++. +||++.. .+.|...+.....      .        ..+..++.
T Consensus         3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~------~--------~~~~~~~~   68 (438)
T PRK07251          3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAE------K--------NLSFEQVM   68 (438)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhh------c--------CCCHHHHH
Confidence            58999999999999999999999999999999874 6887532 2222111110000      0        01122222


Q ss_pred             HHHH-----------HHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533           85 EHLD-----------HYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (325)
Q Consensus        85 ~yl~-----------~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~  153 (325)
                      ++..           +...+.++..  +.++ ...+    +..  +|.+.....    ..+ +.+|+||+|||  +.|+.
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~gV~~--~~g~-~~~~----~~~--~v~v~~~~~----~~~-~~~d~vViATG--s~~~~  132 (438)
T PRK07251         69 ATKNTVTSRLRGKNYAMLAGSGVDL--YDAE-AHFV----SNK--VIEVQAGDE----KIE-LTAETIVINTG--AVSNV  132 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCEE--EEEE-EEEc----cCC--EEEEeeCCC----cEE-EEcCEEEEeCC--CCCCC
Confidence            2222           2233334332  2222 2211    112  344433211    157 89999999999  67888


Q ss_pred             CCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHHH
Q 020533          154 PDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYL  230 (325)
Q Consensus       154 p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~~  230 (325)
                      |++||.+..      . .++++..... ....+++|+|||+|.+|+|+|..+++.|.+|+++.|++ .++|+....+
T Consensus       133 p~i~G~~~~------~-~v~~~~~~~~-~~~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~~~~~  200 (438)
T PRK07251        133 LPIPGLADS------K-HVYDSTGIQS-LETLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAS-TILPREEPSV  200 (438)
T ss_pred             CCCCCcCCC------C-cEEchHHHhc-chhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-ccCCCCCHHH
Confidence            999997654      2 2444443333 22347899999999999999999999999999999998 5667654443

>PRK14694 putative mercuric reductase; Provisional

Probab=99.86  E-value=2.3e-20  Score=175.78  Aligned_cols=198  Identities=17%  Similarity=0.239  Sum_probs=128.0

Q ss_pred             CCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCcc-------C-CCCCCCCCCC--
Q 020533            5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFC-------Q-LPHLPFPSSY--   74 (325)
Q Consensus         5 ~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~-------~-~~~~~~~~~~--   74 (325)
                      ..++||+|||||++|+++|..|++.|.+|+|||+. .+||+|.+.   +|   +|+..+       . ....++....  
T Consensus         4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n~---Gc---iPsk~l~~~a~~~~~~~~~~~~~g~~~   76 (468)
T PRK14694          4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVNI---GC---VPSKIMIRAAHIAHLRRESPFDDGLSA   76 (468)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceecC---Cc---cccHHHHHHHHHHHHHhhccccCCccc
Confidence            35789999999999999999999999999999997 699998742   22   111110       0 0000100000  


Q ss_pred             -CCCCCHHHHHHHHHHHHHHcC-------CCc--ee-eeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEE
Q 020533           75 -PMFVSRAQFIEHLDHYVSHFN-------IGP--SI-RYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVV  143 (325)
Q Consensus        75 -~~~~~~~~~~~yl~~~a~~~~-------l~~--~i-~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIi  143 (325)
                       ..-.+..++.++.++..+.+.       +..  .+ .+..++..++    ...|.|++.++.     ..+ ++||+||+
T Consensus        77 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id----~~~~~V~~~~g~-----~~~-~~~d~lVi  146 (468)
T PRK14694         77 QAPVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVD----ERTLTVTLNDGG-----EQT-VHFDRAFI  146 (468)
T ss_pred             CCCccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEec----CCEEEEEecCCC-----eEE-EECCEEEE
Confidence             011344556555554433221       100  00 2223444443    356888886642     157 89999999


Q ss_pred             cccCCCCCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeee
Q 020533          144 ASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVL  223 (325)
Q Consensus       144 AtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~  223 (325)
                      |||  +.|..|++||++..        .++++.+... ....+++++|||+|.+|+|+|..|++.|.+|+++.+.  .++
T Consensus       147 ATG--s~p~~p~i~G~~~~--------~~~~~~~~~~-l~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~--~~l  213 (468)
T PRK14694        147 GTG--ARPAEPPVPGLAET--------PYLTSTSALE-LDHIPERLLVIGASVVALELAQAFARLGSRVTVLARS--RVL  213 (468)
T ss_pred             eCC--CCCCCCCCCCCCCC--------ceEcchhhhc-hhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEECC--CCC
Confidence            999  78899999998654        2344433222 2234789999999999999999999999999999874  466


Q ss_pred             chhhHHHHH
Q 020533          224 SREMVYLGV  232 (325)
Q Consensus       224 p~~~~~~~~  232 (325)
                      |..+.++..
T Consensus       214 ~~~~~~~~~  222 (468)
T PRK14694        214 SQEDPAVGE  222 (468)
T ss_pred             CCCCHHHHH
Confidence            655444433

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.85  E-value=5.4e-21  Score=178.92  Aligned_cols=193  Identities=19%  Similarity=0.251  Sum_probs=124.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC-CCCCccCCC-CCCceEeecCCCccCCCCCCCCCCCC-CCCCHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN-CYASIWKKY-SYDRLRLHLAKQFCQLPHLPFPSSYP-MFVSRAQF   83 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~-~~Gg~w~~~-~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   83 (325)
                      +|||+||||||+|+++|..|+++|.+|+|+|+.+ .+||+|... +.+...+..+.      .  ...++. ......++
T Consensus         3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~------~--~~~~~~~~~~~~~~~   74 (441)
T PRK08010          3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDA------Q--QHTDFVRAIQRKNEV   74 (441)
T ss_pred             cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHh------c--cCCCHHHHHHHHHHH
Confidence            5899999999999999999999999999999986 479987532 22211100000      0  000110 01111233


Q ss_pred             HHHHHHH-----HHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCC
Q 020533           84 IEHLDHY-----VSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRG  158 (325)
Q Consensus        84 ~~yl~~~-----a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g  158 (325)
                      .+++.+.     .+..++.  +. ..++..++    .+.+.|...++     . .+ +.+|+||+|||  +.|..|++||
T Consensus        75 ~~~~~~~~~~~~~~~~gv~--~~-~g~~~~i~----~~~~~v~~~~g-----~-~~-~~~d~lviATG--s~p~~p~i~G  138 (441)
T PRK08010         75 VNFLRNKNFHNLADMPNID--VI-DGQAEFIN----NHSLRVHRPEG-----N-LE-IHGEKIFINTG--AQTVVPPIPG  138 (441)
T ss_pred             HHHHHHhHHHHHhhcCCcE--EE-EEEEEEec----CCEEEEEeCCC-----e-EE-EEeCEEEEcCC--CcCCCCCCCC
Confidence            3333321     1111322  12 22343332    24566665442     1 46 89999999999  7888899999


Q ss_pred             ccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHHHHH
Q 020533          159 LCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGV  232 (325)
Q Consensus       159 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~~~~  232 (325)
                      .+.+      .+ ++++..+.. ....+++++|||+|.+|+|+|..+++.|.+|+++.|++ .++|..+..+..
T Consensus       139 ~~~~------~~-v~~~~~~~~-~~~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~~~~~~~  203 (441)
T PRK08010        139 ITTT------PG-VYDSTGLLN-LKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAAS-LFLPREDRDIAD  203 (441)
T ss_pred             ccCC------CC-EEChhHhhc-ccccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCC-CCCCCcCHHHHH
Confidence            8765      44 444443333 23356899999999999999999999999999999988 677876555443

>PRK14727 putative mercuric reductase; Provisional

Probab=99.85  E-value=1e-20  Score=178.44  Aligned_cols=212  Identities=19%  Similarity=0.209  Sum_probs=126.8

Q ss_pred             CCCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC-CCCceEeecCCCcc----CCCCCCCCCCCC
Q 020533            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY-SYDRLRLHLAKQFC----QLPHLPFPSSYP   75 (325)
Q Consensus         1 M~~~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~-~y~~~~~~~~~~~~----~~~~~~~~~~~~   75 (325)
                      |...+.++||+|||||++|+++|..|+++|.+|+++|+.+.+||+|.+. +.|+..+..+....    ..+.+.++...+
T Consensus        10 ~~~~~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~   89 (479)
T PRK14727         10 MTRSKLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAP   89 (479)
T ss_pred             cccCCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCC
Confidence            3445567999999999999999999999999999999998899999753 33432211110000    011111110101


Q ss_pred             CCCCHHHHHHHHHHHHHHcC---CCceeee--CeEEE--EEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCC
Q 020533           76 MFVSRAQFIEHLDHYVSHFN---IGPSIRY--QRSVE--SASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET  148 (325)
Q Consensus        76 ~~~~~~~~~~yl~~~a~~~~---l~~~i~~--~~~V~--~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~  148 (325)
                       -.....+..+......+..   ....+..  +.++.  ...+.+ .+.+.|+..++     +..+ ++||+||+|||  
T Consensus        90 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~-~~~v~v~~~~g-----~~~~-~~~d~lViATG--  159 (479)
T PRK14727         90 -SIDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKD-GNTLVVRLHDG-----GERV-LAADRCLIATG--  159 (479)
T ss_pred             -ccCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEec-CCEEEEEeCCC-----ceEE-EEeCEEEEecC--
Confidence             1123333333322222110   0000000  11111  122222 35566765443     2257 89999999999  


Q ss_pred             CCCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhH
Q 020533          149 TNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV  228 (325)
Q Consensus       149 ~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~  228 (325)
                      +.|..|++||.+..        ..+++.+... ....+++++|||+|.+|+|+|..+.+.|.+|+++.|.  .++|..+.
T Consensus       160 s~p~~p~i~G~~~~--------~~~~~~~~l~-~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~--~~l~~~d~  228 (479)
T PRK14727        160 STPTIPPIPGLMDT--------PYWTSTEALF-SDELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS--TLLFREDP  228 (479)
T ss_pred             CCCCCCCCCCcCcc--------ceecchHHhc-cccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC--CCCCcchH
Confidence            78999999997542        2233222211 1234689999999999999999999999999999885  36666555


Q ss_pred             HHHHH
Q 020533          229 YLGVV  233 (325)
Q Consensus       229 ~~~~~  233 (325)
                      .+...
T Consensus       229 ~~~~~  233 (479)
T PRK14727        229 LLGET  233 (479)
T ss_pred             HHHHH
Confidence            44443

>TIGR02053 MerA mercuric reductase

Probab=99.84  E-value=6e-21  Score=179.74  Aligned_cols=196  Identities=18%  Similarity=0.242  Sum_probs=122.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC-CCCCceEeecCCCcc------CCCCCC--CCCCCCC-C
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQFC------QLPHLP--FPSSYPM-F   77 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~-~~y~~~~~~~~~~~~------~~~~~~--~~~~~~~-~   77 (325)
                      |||+||||||+|+++|..|++.|.+|+|+|+.. +||+|.+ .+.|+..+.......      .+....  ..-++.. .
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~   79 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELL   79 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHH
Confidence            699999999999999999999999999999976 8998753 233322111000000      010000  0001110 1


Q ss_pred             CCHHHHHHHH-----HHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCC
Q 020533           78 VSRAQFIEHL-----DHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF  152 (325)
Q Consensus        78 ~~~~~~~~yl-----~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~  152 (325)
                      ....++..++     ...++++++..  ..+ ++..+      +..+|.+.++     + .. +.+|+||+|||  +.|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~gv~~--~~g-~~~~~------~~~~v~v~~g-----~-~~-~~~~~lIiATG--s~p~  141 (463)
T TIGR02053        80 EGKREVVEELRHEKYEDVLSSYGVDY--LRG-RARFK------DPKTVKVDLG-----R-EV-RGAKRFLIATG--ARPA  141 (463)
T ss_pred             HHHHHHHHHHhhhhHHHHHHhCCcEE--EEE-EEEEc------cCCEEEEcCC-----e-EE-EEeCEEEEcCC--CCCC
Confidence            1122333322     23344455432  332 22221      1234555432     1 45 78999999999  7888


Q ss_pred             CCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHHHHH
Q 020533          153 TPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGV  232 (325)
Q Consensus       153 ~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~~~~  232 (325)
                      .|++||.+.+        .++++.+.... ...+++++|||+|.+|+|+|..|++.|.+|+++.|.+ .++|..+.++..
T Consensus       142 ~p~i~G~~~~--------~~~~~~~~~~~-~~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~~~~~  211 (463)
T TIGR02053       142 IPPIPGLKEA--------GYLTSEEALAL-DRIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSD-RLLPREEPEISA  211 (463)
T ss_pred             CCCCCCcccC--------ceECchhhhCc-ccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC-cCCCccCHHHHH
Confidence            9999998754        24444443332 2235899999999999999999999999999999998 577766555443

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PTZ00052 thioredoxin reductase; Provisional

Probab=99.84  E-value=1.2e-20  Score=178.54  Aligned_cols=202  Identities=15%  Similarity=0.201  Sum_probs=123.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC--------CCCCcc-CCCCCCceEeecCCCccC-C----CCCCCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN--------CYASIW-KKYSYDRLRLHLAKQFCQ-L----PHLPFPS   72 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~--------~~Gg~w-~~~~y~~~~~~~~~~~~~-~----~~~~~~~   72 (325)
                      .|||+||||||+|+.+|..|+++|.+|+|+|+..        .+||++ +..++|+..+........ +    ..+.+. 
T Consensus         5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~-   83 (499)
T PTZ00052          5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWK-   83 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCC-
Confidence            5899999999999999999999999999999732        488876 344555322111100000 0    001111 


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcC----CCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCC
Q 020533           73 SYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDE----ATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET  148 (325)
Q Consensus        73 ~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~----~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~  148 (325)
                       ...-....++.+++.+.++.++...  ....++..++...    ..+.++|.+.+...    ... ++||+||+|||  
T Consensus        84 -~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~v~~i~g~a~~~~~~~v~v~~~~~----~~~-i~~d~lIIATG--  153 (499)
T PTZ00052         84 -TSSSFNWGKLVTTVQNHIRSLNFSY--RTGLRSSKVEYINGLAKLKDEHTVSYGDNSQ----EET-ITAKYILIATG--  153 (499)
T ss_pred             -CCCCcCHHHHHHHHHHHHHHhhHHH--HHHhhhcCcEEEEEEEEEccCCEEEEeeCCC----ceE-EECCEEEEecC--
Confidence             0113456788888887776654322  2222111111100    01224455543221    157 89999999999  


Q ss_pred             CCCCCCC-CCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhh
Q 020533          149 TNPFTPD-IRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREM  227 (325)
Q Consensus       149 ~~p~~p~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~  227 (325)
                      +.|..|. +||.+.+         .+.+.+... ....+++++|||+|.+|+|+|..|++.|.+||++.++  .++|..+
T Consensus       154 s~p~~p~~i~G~~~~---------~~~~~~~~~-~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~--~~l~~~d  221 (499)
T PTZ00052        154 GRPSIPEDVPGAKEY---------SITSDDIFS-LSKDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS--IPLRGFD  221 (499)
T ss_pred             CCCCCCCCCCCccce---------eecHHHHhh-hhcCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC--cccccCC
Confidence            7788874 8886543         222222222 1224579999999999999999999999999999874  3455554


Q ss_pred             HHHH
Q 020533          228 VYLG  231 (325)
Q Consensus       228 ~~~~  231 (325)
                      ..+.
T Consensus       222 ~~~~  225 (499)
T PTZ00052        222 RQCS  225 (499)
T ss_pred             HHHH
Confidence            4443

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=99.84  E-value=1.3e-19  Score=170.79  Aligned_cols=195  Identities=14%  Similarity=0.194  Sum_probs=117.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC-CCCCceEeecCCCccC----CCCCCCCCCCCCCCCHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQFCQ----LPHLPFPSSYPMFVSRA   81 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~-~~y~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~   81 (325)
                      .|||+|||||++|+++|..|++.|.+|+|+|+ +.+||+|.. .++|+..+......+.    ...+..... ....+..
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~-~~~~~~~   78 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVE-NVSVDWE   78 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCC-CCcCCHH
Confidence            38999999999999999999999999999999 789998754 3444322111111100    000000000 0112333


Q ss_pred             HHHHHHHH-----------HHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533           82 QFIEHLDH-----------YVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (325)
Q Consensus        82 ~~~~yl~~-----------~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~  150 (325)
                      .+.++...           ..++.++..  .. .++..+    +...+.+...++     . .+ +++|+||+|||  +.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~-g~~~~~----~~~~~~v~~~~g-----~-~~-~~~d~lVlAtG--~~  142 (461)
T TIGR01350        79 KMQKRKNKVVKKLVGGVKGLLKKNKVTV--IK-GEAKFL----DPGTVLVTGENG-----E-ET-LTAKNIIIATG--SR  142 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEE--EE-EEEEEc----cCCEEEEecCCC-----c-EE-EEeCEEEEcCC--CC
Confidence            33333322           223334321  22 222222    124455554332     1 46 89999999999  67


Q ss_pred             CCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhH
Q 020533          151 PFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV  228 (325)
Q Consensus       151 p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~  228 (325)
                      |+.|++| . .+      .+..+++..........+++++|||+|.+|+|+|..+.+.|.+|+++.|.+ .++|....
T Consensus       143 p~~~~~~-~-~~------~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~~~  211 (461)
T TIGR01350       143 PRSLPGP-F-DF------DGEVVITSTGALNLKEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLD-RILPGEDA  211 (461)
T ss_pred             CCCCCCC-C-CC------CCceEEcchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC-CCCCCCCH
Confidence            7777765 1 12      222333332222223356899999999999999999999999999999998 56665443

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=99.84  E-value=7.3e-20  Score=172.62  Aligned_cols=199  Identities=14%  Similarity=0.191  Sum_probs=118.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEec------CCCCCCccCCC-CCCceEee-cCCCccCC----CCCCCCCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILER------ENCYASIWKKY-SYDRLRLH-LAKQFCQL----PHLPFPSSY   74 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~------~~~~Gg~w~~~-~y~~~~~~-~~~~~~~~----~~~~~~~~~   74 (325)
                      .||++||||||+|+++|..+++.|.+|+|+|+      ...+||+|... ++|...+. .......+    ..+..... 
T Consensus         4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~-   82 (475)
T PRK06327          4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVD-   82 (475)
T ss_pred             ceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCC-
Confidence            58999999999999999999999999999998      36789988643 23321110 00000000    00000000 


Q ss_pred             CCCCCHHHHHHH-----------HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEE
Q 020533           75 PMFVSRAQFIEH-----------LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVV  143 (325)
Q Consensus        75 ~~~~~~~~~~~y-----------l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIi  143 (325)
                      ..-....++.+.           +.+..+..++.   .+..++..++...  ..++|.+....+     .+ +++|+||+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~g~~~~~~~~~--~~~~v~v~~~~~-----~~-~~~d~lVi  151 (475)
T PRK06327         83 GVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKIT---VLKGRGSFVGKTD--AGYEIKVTGEDE-----TV-ITAKHVII  151 (475)
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE---EEEEEEEEecCCC--CCCEEEEecCCC-----eE-EEeCEEEE
Confidence            000122222222           22233334433   2334444444332  457777753221     57 89999999


Q ss_pred             cccCCCCCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeee
Q 020533          144 ASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVL  223 (325)
Q Consensus       144 AtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~  223 (325)
                      |||  +.|+.|  |+.+ +      .+..+++++........+++|+|||+|.+|+|+|..+++.|.+|+++.|++ .++
T Consensus       152 ATG--s~p~~~--p~~~-~------~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l  219 (475)
T PRK06327        152 ATG--SEPRHL--PGVP-F------DNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALP-AFL  219 (475)
T ss_pred             eCC--CCCCCC--CCCC-C------CCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC-ccC
Confidence            999  566533  3322 2      233333333222223357899999999999999999999999999999998 556


Q ss_pred             chhhHH
Q 020533          224 SREMVY  229 (325)
Q Consensus       224 p~~~~~  229 (325)
                      |..+.+
T Consensus       220 ~~~d~~  225 (475)
T PRK06327        220 AAADEQ  225 (475)
T ss_pred             CcCCHH
Confidence            654333

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.84  E-value=2.7e-19  Score=168.58  Aligned_cols=203  Identities=14%  Similarity=0.144  Sum_probs=115.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC-CCCCceEeecCCCccC-----CCCCCCCCCCCCCCCH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQFCQ-----LPHLPFPSSYPMFVSR   80 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~-~~y~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~   80 (325)
                      ++||+||||||+|+++|..|++.|.+|+|+|++ .+||++.. .+.|+..+........     ...+....  ......
T Consensus         4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~--~~~~~~   80 (466)
T PRK07818          4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISG--EVTFDY   80 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCc--CcccCH
Confidence            589999999999999999999999999999986 57887654 3333211110000000     00000000  011233


Q ss_pred             HHHHHHHHHHHHHcCCCceeeeC-eEEEEEEE---cCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCC
Q 020533           81 AQFIEHLDHYVSHFNIGPSIRYQ-RSVESASY---DEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDI  156 (325)
Q Consensus        81 ~~~~~yl~~~a~~~~l~~~i~~~-~~V~~i~~---~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~  156 (325)
                      ..+.++.++..++..-.....+. ..|+.++-   ..+.+.+.|...++     +..+ ++||+||+|||  +.|..|  
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g-----~~~~-~~~d~lViATG--s~p~~~--  150 (466)
T PRK07818         81 GAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDG-----GTET-VTFDNAIIATG--SSTRLL--  150 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEecCC-----CeeE-EEcCEEEEeCC--CCCCCC--
Confidence            33333333332211000000110 12222221   11124444544332     1157 89999999999  666553  


Q ss_pred             CCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHHHH
Q 020533          157 RGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLG  231 (325)
Q Consensus       157 ~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~~~  231 (325)
                      ||.+.       .+.++.+.+... ....+++++|||+|.+|+|+|..+++.|.+|+++.+.+ .++|..+.++.
T Consensus       151 pg~~~-------~~~v~~~~~~~~-~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~-~~l~~~d~~~~  216 (466)
T PRK07818        151 PGTSL-------SENVVTYEEQIL-SRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLD-RALPNEDAEVS  216 (466)
T ss_pred             CCCCC-------CCcEEchHHHhc-cccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCC-CcCCccCHHHH
Confidence            55432       233443332111 22346899999999999999999999999999999988 67776554443

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=99.83  E-value=4.4e-20  Score=174.14  Aligned_cols=205  Identities=19%  Similarity=0.208  Sum_probs=124.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC-CCCceEeecCCCccC----CCCCCCCCCCCCCCCH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY-SYDRLRLHLAKQFCQ----LPHLPFPSSYPMFVSR   80 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~-~y~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~   80 (325)
                      ..|||+||||||+|+++|..|++.|.+|+|+|+. .+||+|... +.|+..+......+.    ...+..... ......
T Consensus         3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~   80 (472)
T PRK05976          3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVS-GPALDF   80 (472)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCC-CCccCH
Confidence            4689999999999999999999999999999996 789998643 333221111000000    000000000 001122


Q ss_pred             HH-------HHHHHH----HHHHHcCCCceeeeCeEEEEEEEc---CCCCcEEEEEeecCCCCceeEEEEEeCeEEEccc
Q 020533           81 AQ-------FIEHLD----HYVSHFNIGPSIRYQRSVESASYD---EATNMWNVKASNLLSPGREIEEYYSGRFLVVASG  146 (325)
Q Consensus        81 ~~-------~~~yl~----~~a~~~~l~~~i~~~~~V~~i~~~---~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG  146 (325)
                      .+       +.+++.    +.+++.++.   .+..++..++..   ++.+.+.|...++.     ..+ ++||+||+|||
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~---~~~g~a~~i~~~~~~~~~~~~~v~~~~g~-----~~~-~~~d~lViATG  151 (472)
T PRK05976         81 AKVQERKDGIVDRLTKGVAALLKKGKID---VFHGIGRILGPSIFSPMPGTVSVETETGE-----NEM-IIPENLLIATG  151 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCE---EEEEEEEEeCCCCCcCCceEEEEEeCCCc-----eEE-EEcCEEEEeCC
Confidence            22       222232    333444544   233445555432   12235666654431     157 89999999999


Q ss_pred             CCCCCCCCCCCCccccccCCCCCcc-EEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeech
Q 020533          147 ETTNPFTPDIRGLCSFCSSATGTGE-VIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSR  225 (325)
Q Consensus       147 ~~~~p~~p~~~g~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~  225 (325)
                        +.|..|  |+.+ +      .+. ++++.+... ....+++++|||+|.+|+|+|..|++.|.+|+++.|.+ .++|.
T Consensus       152 --s~p~~~--p~~~-~------~~~~~~~~~~~~~-~~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~-~il~~  218 (472)
T PRK05976        152 --SRPVEL--PGLP-F------DGEYVISSDEALS-LETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAAD-RILPT  218 (472)
T ss_pred             --CCCCCC--CCCC-C------CCceEEcchHhhC-ccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecC-ccCCc
Confidence              566543  3332 1      222 444433332 22346899999999999999999999999999999998 67787


Q ss_pred             hhHHHHHHH
Q 020533          226 EMVYLGVVL  234 (325)
Q Consensus       226 ~~~~~~~~~  234 (325)
                      .+..+...+
T Consensus       219 ~~~~~~~~l  227 (472)
T PRK05976        219 EDAELSKEV  227 (472)
T ss_pred             CCHHHHHHH
Confidence            665554443

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.83  E-value=5e-20  Score=173.38  Aligned_cols=203  Identities=16%  Similarity=0.096  Sum_probs=123.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC-CCCCceEeecC-CCcc---CCCCCCCCCCCCCCCCHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLA-KQFC---QLPHLPFPSSYPMFVSRA   81 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~-~~y~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~   81 (325)
                      +|||+||||||+|+.+|..|++.|.+|+|+|+.+.+||+|.. .++|+..+... ....   ....+..... ....+..
T Consensus         4 ~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~~   82 (471)
T PRK06467          4 KTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFG-EPKIDID   82 (471)
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccC-CCCcCHH
Confidence            589999999999999999999999999999998889997744 34554221100 0000   0000000000 0112334


Q ss_pred             HHHHHHHHH-----------HHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533           82 QFIEHLDHY-----------VSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (325)
Q Consensus        82 ~~~~yl~~~-----------a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~  150 (325)
                      ++.++....           ++..++..  +. .++..++    .+...|...++     +..+ ++||+||+|||  +.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~gV~~--~~-g~a~~~~----~~~v~v~~~~g-----~~~~-~~~d~lViATG--s~  147 (471)
T PRK06467         83 KMRARKEKVVKQLTGGLAGMAKGRKVTV--VN-GLGKFTG----GNTLEVTGEDG-----KTTV-IEFDNAIIAAG--SR  147 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEE--EE-EEEEEcc----CCEEEEecCCC-----ceEE-EEcCEEEEeCC--CC
Confidence            444444332           33335432  32 2232221    23344443322     1257 89999999999  66


Q ss_pred             CCC-CCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHH
Q 020533          151 PFT-PDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVY  229 (325)
Q Consensus       151 p~~-p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~  229 (325)
                      |.. |.+++..         ..++.+.+.... ...+++++|||+|.+|+|+|..+++.|.+||++.+.+ .++|..+.+
T Consensus       148 p~~~p~~~~~~---------~~v~~~~~~~~~-~~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~-~il~~~d~~  216 (471)
T PRK06467        148 PIQLPFIPHDD---------PRIWDSTDALEL-KEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFD-QVIPAADKD  216 (471)
T ss_pred             CCCCCCCCCCC---------CcEEChHHhhcc-ccCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCC-CCCCcCCHH
Confidence            753 4444422         123433333322 2246899999999999999999999999999999998 678876666


Q ss_pred             HHHHHHh
Q 020533          230 LGVVLFK  236 (325)
Q Consensus       230 ~~~~~~~  236 (325)
                      +...+.+
T Consensus       217 ~~~~~~~  223 (471)
T PRK06467        217 IVKVFTK  223 (471)
T ss_pred             HHHHHHH
Confidence            5554443

>PRK06370 mercuric reductase; Validated

Probab=99.83  E-value=3.8e-20  Score=174.19  Aligned_cols=195  Identities=15%  Similarity=0.204  Sum_probs=121.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC-CCCCceEeecCCCcc----CCCCCCCCCCCCCCCCHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQFC----QLPHLPFPSSYPMFVSRA   81 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~-~~y~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~   81 (325)
                      ++||+||||||+|+++|..|++.|.+|+|+|+. .+||+|.. .+.|+..+.......    ....+.++..........
T Consensus         5 ~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   83 (463)
T PRK06370          5 RYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVDFK   83 (463)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccCHH
Confidence            589999999999999999999999999999996 57887643 222221110000000    000011110000112334


Q ss_pred             HHHHHHHHHH-----------HHc-CCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533           82 QFIEHLDHYV-----------SHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (325)
Q Consensus        82 ~~~~yl~~~a-----------~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~  149 (325)
                      ++.++..+.+           ++. ++.  ++.++.+.    .   +..+|++..        .+ +++|+||+|||  +
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~--v~~g~~~~----~---~~~~v~v~~--------~~-~~~d~lViATG--s  143 (463)
T PRK06370         84 AVMARKRRIRARSRHGSEQWLRGLEGVD--VFRGHARF----E---SPNTVRVGG--------ET-LRAKRIFINTG--A  143 (463)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHhcCCCcE--EEEEEEEE----c---cCCEEEECc--------EE-EEeCEEEEcCC--C
Confidence            4444433332           222 332  24444321    1   112344422        56 89999999999  7


Q ss_pred             CCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHH
Q 020533          150 NPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVY  229 (325)
Q Consensus       150 ~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~  229 (325)
                      .|..|++||.+..        .++++.+..+ ....+++|+|||+|.+|+|+|..+++.|.+|+++.|.+ .++|..+.+
T Consensus       144 ~p~~p~i~G~~~~--------~~~~~~~~~~-~~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~-~~l~~~~~~  213 (463)
T PRK06370        144 RAAIPPIPGLDEV--------GYLTNETIFS-LDELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGP-RLLPREDED  213 (463)
T ss_pred             CCCCCCCCCCCcC--------ceEcchHhhC-ccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-CCCcccCHH
Confidence            8999999997653        2444443332 22347999999999999999999999999999999998 677765544


Q ss_pred             HHH
Q 020533          230 LGV  232 (325)
Q Consensus       230 ~~~  232 (325)
                      +..
T Consensus       214 ~~~  216 (463)
T PRK06370        214 VAA  216 (463)
T ss_pred             HHH
Confidence            443

>PRK13748 putative mercuric reductase; Provisional

Probab=99.83  E-value=7e-20  Score=176.55  Aligned_cols=202  Identities=17%  Similarity=0.184  Sum_probs=124.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC-CCCCceEeecCCCcc----CCCC-CCCCCCCCCCCCH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQFC----QLPH-LPFPSSYPMFVSR   80 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~-~~y~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~   80 (325)
                      ++||+||||||+|+++|..|++.|.+|+|||++ .+||+|.+ .++|+..+..+....    ..+. ..++.. ......
T Consensus        98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~-~~~~~~  175 (561)
T PRK13748         98 PLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAAT-VPTIDR  175 (561)
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCC-CCccCH
Confidence            589999999999999999999999999999998 79999864 334432211110000    0000 011101 111234


Q ss_pred             HHHHHHHHHHHHHcC-------C----CceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533           81 AQFIEHLDHYVSHFN-------I----GPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (325)
Q Consensus        81 ~~~~~yl~~~a~~~~-------l----~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~  149 (325)
                      ..+.++..+...++.       +    ... .+..++..++    ...+.|+..++     +..+ ++||+||+|||  +
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~g~~~~~~----~~~~~v~~~~g-----~~~~-~~~d~lviAtG--s  242 (561)
T PRK13748        176 SRLLAQQQARVDELRHAKYEGILDGNPAIT-VLHGEARFKD----DQTLIVRLNDG-----GERV-VAFDRCLIATG--A  242 (561)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHhccCCeE-EEEEEEEEec----CCEEEEEeCCC-----ceEE-EEcCEEEEcCC--C
Confidence            455554443332211       0    011 1222333222    24566665432     1157 89999999999  7


Q ss_pred             CCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHH
Q 020533          150 NPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVY  229 (325)
Q Consensus       150 ~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~  229 (325)
                      .|..|++||.+..        .++++.+... ....+++++|||+|.+|+|+|..+++.|.+|+++.|..  ++|..+.+
T Consensus       243 ~p~~p~i~g~~~~--------~~~~~~~~~~-~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~--~l~~~d~~  311 (561)
T PRK13748        243 SPAVPPIPGLKET--------PYWTSTEALV-SDTIPERLAVIGSSVVALELAQAFARLGSKVTILARST--LFFREDPA  311 (561)
T ss_pred             CCCCCCCCCCCcc--------ceEccHHHhh-cccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc--cccccCHH
Confidence            8899999997653        1233222111 22346899999999999999999999999999999854  56665555


Q ss_pred             HHHHH
Q 020533          230 LGVVL  234 (325)
Q Consensus       230 ~~~~~  234 (325)
                      ++..+
T Consensus       312 ~~~~l  316 (561)
T PRK13748        312 IGEAV  316 (561)
T ss_pred             HHHHH
Confidence            54433

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=99.83  E-value=4.4e-20  Score=173.80  Aligned_cols=203  Identities=17%  Similarity=0.172  Sum_probs=124.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC-CCCCceEeecCCC----ccCCCCCCCCCCCCCCCCHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQ----FCQLPHLPFPSSYPMFVSRA   81 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~-~~y~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~   81 (325)
                      .|||+|||||++|+++|..|++.|.+|+|+|+ +.+||+|.. .++|+..+.....    ...++.+..... ....+..
T Consensus         3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~-~~~~~~~   80 (460)
T PRK06292          3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHAD-GPKIDFK   80 (460)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcC-CCccCHH
Confidence            48999999999999999999999999999999 679999864 2222211100000    000111111111 1345677


Q ss_pred             HHHHHHHHHHHHcCCCc-eeee---CeEEE-E-EEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCC
Q 020533           82 QFIEHLDHYVSHFNIGP-SIRY---QRSVE-S-ASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPD  155 (325)
Q Consensus        82 ~~~~yl~~~a~~~~l~~-~i~~---~~~V~-~-i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~  155 (325)
                      ++.+++++..+.+.-.. .-.+   +-++. . ....   +.+++.+ ++       .+ +.+|+||+|||.  .  .|.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~---~~~~v~v-~~-------~~-~~~d~lIiATGs--~--~p~  144 (460)
T PRK06292         81 KVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFV---DPNTVEV-NG-------ER-IEAKNIVIATGS--R--VPP  144 (460)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEc---cCCEEEE-Cc-------EE-EEeCEEEEeCCC--C--CCC
Confidence            78887777666542111 0000   11111 0 1111   1233444 21       57 899999999995  3  456


Q ss_pred             CCCccccccCCCCCc-cEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHHHHHHH
Q 020533          156 IRGLCSFCSSATGTG-EVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVL  234 (325)
Q Consensus       156 ~~g~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~~~~~~  234 (325)
                      +||.+.+      .+ .++++.+.. .....+++++|||+|.+|+|+|..+++.|.+|+++.|.+ .++|..+.++...+
T Consensus       145 ipg~~~~------~~~~~~~~~~~~-~~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~~~~~~~  216 (460)
T PRK06292        145 IPGVWLI------LGDRLLTSDDAF-ELDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGD-RILPLEDPEVSKQA  216 (460)
T ss_pred             CCCCccc------CCCcEECchHHh-CccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CcCcchhHHHHHHH
Confidence            6666433      22 233333322 223457999999999999999999999999999999988 67776555554443


Q ss_pred             H
Q 020533          235 F  235 (325)
Q Consensus       235 ~  235 (325)
                      .
T Consensus       217 ~  217 (460)
T PRK06292        217 Q  217 (460)
T ss_pred             H
Confidence            3

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=99.83  E-value=1.3e-19  Score=166.35  Aligned_cols=168  Identities=20%  Similarity=0.330  Sum_probs=115.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            8 VEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      ++|+|||||++|+.+|..|++.  ..+++|+++++..-       |....+              +..........++..
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~-------y~~~~l--------------~~~~~~~~~~~~~~~   61 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDE-------YNKPDL--------------SHVFSQGQRADDLTR   61 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCC-------cCcCcC--------------cHHHhCCCCHHHhhc
Confidence            4899999999999999999886  45899999987421       211100              000011122234443


Q ss_pred             H-HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCcccccc
Q 020533           86 H-LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS  164 (325)
Q Consensus        86 y-l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~  164 (325)
                      + ..++++++++..  +++++|++++.+.    +.|++..        .. +.||+||+|||  +.|..|++||.+.   
T Consensus        62 ~~~~~~~~~~gv~~--~~~~~V~~id~~~----~~v~~~~--------~~-~~yd~LVlATG--~~~~~p~i~G~~~---  121 (377)
T PRK04965         62 QSAGEFAEQFNLRL--FPHTWVTDIDAEA----QVVKSQG--------NQ-WQYDKLVLATG--ASAFVPPIPGREL---  121 (377)
T ss_pred             CCHHHHHHhCCCEE--ECCCEEEEEECCC----CEEEECC--------eE-EeCCEEEECCC--CCCCCCCCCCCce---
Confidence            2 456667777554  8889999997653    3565432        56 89999999999  6788888888642   


Q ss_pred             CCCCCccEEecCCCCC-----CCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeec
Q 020533          165 SATGTGEVIHSTQYKN-----GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLS  224 (325)
Q Consensus       165 ~~~~~g~~~~~~~~~~-----~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p  224 (325)
                             +++.....+     .....+++|+|||+|.+|+|+|..|.+.+.+|+++.+.+ .++|
T Consensus       122 -------v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~-~~l~  178 (377)
T PRK04965        122 -------MLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAA-SLLA  178 (377)
T ss_pred             -------EEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCC-cccc
Confidence                   122111111     111357899999999999999999999999999999988 4444

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=99.83  E-value=6.4e-19  Score=164.57  Aligned_cols=178  Identities=17%  Similarity=0.194  Sum_probs=113.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            8 VEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      ++|+|||||++|+.+|..|++.  +.+|+|+|+++.++       |..+         .++...  .  .......+...
T Consensus         2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~-------~~~~---------~lp~~~--~--~~~~~~~~~~~   61 (438)
T PRK13512          2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS-------FANC---------ALPYYI--G--EVVEDRKYALA   61 (438)
T ss_pred             CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc-------cccC---------Ccchhh--c--CccCCHHHccc
Confidence            4799999999999999999887  57999999998644       1110         000000  0  01111222222


Q ss_pred             HH-HHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCcccccc
Q 020533           86 HL-DHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS  164 (325)
Q Consensus        86 yl-~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~  164 (325)
                      +. .++.++.++..  +.+++|++++.+.  ..  |.+.++.++  +..+ +.||+||+|||  +.|+.|++++..    
T Consensus        62 ~~~~~~~~~~~i~v--~~~~~V~~Id~~~--~~--v~~~~~~~~--~~~~-~~yd~lviAtG--s~~~~~~~~~~~----  126 (438)
T PRK13512         62 YTPEKFYDRKQITV--KTYHEVIAINDER--QT--VTVLNRKTN--EQFE-ESYDKLILSPG--ASANSLGFESDI----  126 (438)
T ss_pred             CCHHHHHHhCCCEE--EeCCEEEEEECCC--CE--EEEEECCCC--cEEe-eecCEEEECCC--CCCCCCCCCCCC----
Confidence            21 23445566544  8889999998754  33  554443221  2246 78999999999  777776654321    


Q ss_pred             CCCCCccEEecCCCCCC-------CCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhH
Q 020533          165 SATGTGEVIHSTQYKNG-------KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV  228 (325)
Q Consensus       165 ~~~~~g~~~~~~~~~~~-------~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~  228 (325)
                             ++....+.+.       ....+++++|||+|.+|+|+|..|++.|.+|+++.|++ .++|..+.
T Consensus       127 -------~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~-~l~~~~d~  189 (438)
T PRK13512        127 -------TFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSD-KINKLMDA  189 (438)
T ss_pred             -------eEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEeccc-ccchhcCH
Confidence                   1211111110       12246899999999999999999999999999999998 45554433

>PRK12831 putative oxidoreductase; Provisional

Probab=99.83  E-value=6.1e-20  Score=172.08  Aligned_cols=171  Identities=23%  Similarity=0.300  Sum_probs=120.9

Q ss_pred             CCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHH
Q 020533            5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI   84 (325)
Q Consensus         5 ~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (325)
                      ...++|+||||||+||++|..|+++|++|+|||+.+.+||.+.+.               ++.+.++        .+++.
T Consensus       138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~g---------------ip~~~l~--------~~~~~  194 (464)
T PRK12831        138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYG---------------IPEFRLP--------KETVV  194 (464)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeec---------------CCCccCC--------ccHHH
Confidence            346899999999999999999999999999999999999876421               2211111        23466


Q ss_pred             HHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCcccccc
Q 020533           85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS  164 (325)
Q Consensus        85 ~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~  164 (325)
                      ++..+.++++++..  ++++.+..          .+..++..      .. +.||.||+|||. +.|+.+++||.+.   
T Consensus       195 ~~~~~~~~~~gv~i--~~~~~v~~----------~v~~~~~~------~~-~~~d~viiAtGa-~~~~~l~ipG~~~---  251 (464)
T PRK12831        195 KKEIENIKKLGVKI--ETNVVVGK----------TVTIDELL------EE-EGFDAVFIGSGA-GLPKFMGIPGENL---  251 (464)
T ss_pred             HHHHHHHHHcCCEE--EcCCEECC----------cCCHHHHH------hc-cCCCEEEEeCCC-CCCCCCCCCCcCC---
Confidence            67777788888654  88876521          12222210      24 578999999995 2577788888753   


Q ss_pred             CCCCCccEEecCCC----------C---CCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechh
Q 020533          165 SATGTGEVIHSTQY----------K---NGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSRE  226 (325)
Q Consensus       165 ~~~~~g~~~~~~~~----------~---~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~  226 (325)
                          .| ++...++          .   +.....+++|+|||+|++|+|+|..+.+.|.+|++++|+...-+|..
T Consensus       252 ----~g-V~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~  321 (464)
T PRK12831        252 ----NG-VFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPAR  321 (464)
T ss_pred             ----cC-cEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCC
Confidence                12 2222111          1   11235689999999999999999999999999999999875455543

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=99.83  E-value=3.5e-19  Score=167.85  Aligned_cols=199  Identities=19%  Similarity=0.180  Sum_probs=119.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC--------CCCCccCC-CCCCceEeecCCCccC----CCCCCCCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN--------CYASIWKK-YSYDRLRLHLAKQFCQ----LPHLPFPSS   73 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~--------~~Gg~w~~-~~y~~~~~~~~~~~~~----~~~~~~~~~   73 (325)
                      +|||+|||+|++|+.+|..+++.|.+|+++|+..        .+||+|.+ .++|+..+........    ...+.+...
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~   81 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE   81 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence            4899999999999999999999999999999731        58998754 5666443221111100    000101000


Q ss_pred             CCCCCCHHHHHHHHHHHHHH-----------cCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEE
Q 020533           74 YPMFVSRAQFIEHLDHYVSH-----------FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLV  142 (325)
Q Consensus        74 ~~~~~~~~~~~~yl~~~a~~-----------~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vI  142 (325)
                      ........++.++..+...+           .++.   .+..+..-+    +.+...|...++     +... +.+|+||
T Consensus        82 ~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~---~i~G~a~f~----~~~~v~v~~~~g-----~~~~-~~~d~lV  148 (484)
T TIGR01438        82 ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVN---YENAYAEFV----DKHRIKATNKKG-----KEKI-YSAERFL  148 (484)
T ss_pred             CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcE---EEEEEEEEc----CCCEEEEeccCC-----CceE-EEeCEEE
Confidence            00112333444444333322           2322   121222111    123333332222     1157 8999999


Q ss_pred             EcccCCCCCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCee
Q 020533          143 VASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHV  222 (325)
Q Consensus       143 iAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~  222 (325)
                      +|||  +.|..|++||.+..         .+.+.+... ....+++++|||+|.+|+|+|..+++.|.+|+++.|.  .+
T Consensus       149 IATG--s~p~~p~ipG~~~~---------~~~~~~~~~-~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~--~~  214 (484)
T TIGR01438       149 IATG--ERPRYPGIPGAKEL---------CITSDDLFS-LPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS--IL  214 (484)
T ss_pred             EecC--CCCCCCCCCCccce---------eecHHHhhc-ccccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec--cc
Confidence            9999  78888999987543         123322222 1224578999999999999999999999999999984  46


Q ss_pred             echhhHHHHH
Q 020533          223 LSREMVYLGV  232 (325)
Q Consensus       223 ~p~~~~~~~~  232 (325)
                      +|..+.++..
T Consensus       215 l~~~d~~~~~  224 (484)
T TIGR01438       215 LRGFDQDCAN  224 (484)
T ss_pred             ccccCHHHHH
Confidence            6665555443

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=99.82  E-value=1.6e-19  Score=180.70  Aligned_cols=169  Identities=20%  Similarity=0.263  Sum_probs=122.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      ..++|+|||||||||+||..|+++|++|+|||+.+.+||..++.               ++         .|....++.+
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yG---------------IP---------~~rlp~~vi~  360 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYG---------------IP---------EFRLPNQLID  360 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEcc---------------CC---------CCcChHHHHH
Confidence            46899999999999999999999999999999999999975532               22         2233346667


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~  165 (325)
                      ...+.++.+|+..  +.++.+-          ..+++++.       .. ..||.|++|||. ..|+.+++||.+.    
T Consensus       361 ~~i~~l~~~Gv~f--~~n~~vG----------~dit~~~l-------~~-~~yDAV~LAtGA-~~pr~l~IpG~dl----  415 (944)
T PRK12779        361 DVVEKIKLLGGRF--VKNFVVG----------KTATLEDL-------KA-AGFWKIFVGTGA-GLPTFMNVPGEHL----  415 (944)
T ss_pred             HHHHHHHhhcCeE--EEeEEec----------cEEeHHHh-------cc-ccCCEEEEeCCC-CCCCcCCCCCCcC----
Confidence            7677777788654  6666541          12444432       34 578999999996 3678888988643    


Q ss_pred             CCCCccEEecCCCC---------------CCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhh
Q 020533          166 ATGTGEVIHSTQYK---------------NGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREM  227 (325)
Q Consensus       166 ~~~~g~~~~~~~~~---------------~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~  227 (325)
                         .| ++...++.               ......||+|+|||+|++|+|+|..+.+.|++|++++|++...+|...
T Consensus       416 ---~G-V~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~  488 (944)
T PRK12779        416 ---LG-VMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARV  488 (944)
T ss_pred             ---cC-cEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCcccccccH
Confidence               22 12111111               012346899999999999999999999999999999998754555433

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=99.82  E-value=1.2e-19  Score=179.77  Aligned_cols=170  Identities=20%  Similarity=0.228  Sum_probs=117.5

Q ss_pred             EEEECCChHHHHHHHHHHhc---CCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533           10 VIMVGAGTSGLATAACLSLQ---SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus        10 v~IIGaG~~Gl~~a~~L~~~---g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      |+|||+|++|+.+|..|++.   +++|+|||+++.++       |..+.+  +.            ......+.+++...
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~-------y~r~~L--~~------------~l~g~~~~~~l~~~   59 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN-------YNRILL--SS------------VLQGEADLDDITLN   59 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC-------cccccc--cH------------HHCCCCCHHHccCC
Confidence            68999999999999999875   46999999998754       221111  00            00011122333333


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA  166 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~~  166 (325)
                      ..++.++.++..  +++++|++++...    +.|++.++       .+ +.||+||+|||  +.|+.|++||.+..    
T Consensus        60 ~~~~~~~~gv~~--~~g~~V~~Id~~~----k~V~~~~g-------~~-~~yD~LVlATG--s~p~~p~ipG~~~~----  119 (785)
T TIGR02374        60 SKDWYEKHGITL--YTGETVIQIDTDQ----KQVITDAG-------RT-LSYDKLILATG--SYPFILPIPGADKK----  119 (785)
T ss_pred             CHHHHHHCCCEE--EcCCeEEEEECCC----CEEEECCC-------cE-eeCCEEEECCC--CCcCCCCCCCCCCC----
Confidence            344556667554  8899999997653    56777653       56 89999999999  77999999997642    


Q ss_pred             CCCccEEecCCCCCC-----CCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeech
Q 020533          167 TGTGEVIHSTQYKNG-----KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSR  225 (325)
Q Consensus       167 ~~~g~~~~~~~~~~~-----~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~  225 (325)
                         + ++......+.     ....+++++|||+|.+|+|+|..|.+.|.+|+++.+.+ +++++
T Consensus       120 ---~-v~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~-~ll~~  178 (785)
T TIGR02374       120 ---G-VYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAP-GLMAK  178 (785)
T ss_pred             ---C-EEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCC-chhhh
Confidence               2 2222211111     11247899999999999999999999999999999988 44443

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=99.82  E-value=5.1e-19  Score=166.41  Aligned_cols=203  Identities=15%  Similarity=0.157  Sum_probs=117.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhc-CCCeEEEecC--------CCCCCccCC-CCCCceEeecCCCcc----CCCCCCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQ-SIPYVILERE--------NCYASIWKK-YSYDRLRLHLAKQFC----QLPHLPFP   71 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~-g~~v~v~e~~--------~~~Gg~w~~-~~y~~~~~~~~~~~~----~~~~~~~~   71 (325)
                      .+|||+|||+|++|..+|..+++. |.+|+|+|+.        ..+||++-+ .+.|+..+.......    ....+...
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~   81 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE   81 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence            468999999999999999999997 9999999984        579998754 344432221111000    00000000


Q ss_pred             CC-CCCCCCHHHHHHHHHHHHHHc------------CCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCC-CceeEEEEE
Q 020533           72 SS-YPMFVSRAQFIEHLDHYVSHF------------NIGPSIRYQRSVESASYDEATNMWNVKASNLLSP-GREIEEYYS  137 (325)
Q Consensus        72 ~~-~~~~~~~~~~~~yl~~~a~~~------------~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~-~~~~~~~~~  137 (325)
                      .. ...-....++.++.+...++.            ++.  +..+. .   ... +.+  +|.+.....+ +.+... ++
T Consensus        82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~--~i~G~-a---~f~-~~~--~v~V~~~~~~~~~~~~~-~~  151 (486)
T TIGR01423        82 FDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLT--FFLGW-G---ALE-DKN--VVLVRESADPKSAVKER-LQ  151 (486)
T ss_pred             ccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeE--EEEEE-E---EEc-cCC--EEEEeeccCCCCCcceE-EE
Confidence            00 000123334444443332221            211  11111 1   111 122  3444321100 001257 99


Q ss_pred             eCeEEEcccCCCCCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhc---cCeEEE
Q 020533          138 GRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANH---AAKTSL  214 (325)
Q Consensus       138 ad~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~---~~~v~~  214 (325)
                      ||+||+|||  +.|..|++||.+..          +.+.+... ....+++++|||+|.+|+|+|..+...   |.+||+
T Consensus       152 ~d~lIIATG--s~p~~p~i~G~~~~----------~~~~~~~~-~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtl  218 (486)
T TIGR01423       152 AEHILLATG--SWPQMLGIPGIEHC----------ISSNEAFY-LDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTL  218 (486)
T ss_pred             CCEEEEecC--CCCCCCCCCChhhe----------echhhhhc-cccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEE
Confidence            999999999  77888999986532          22211111 122468999999999999999877655   899999


Q ss_pred             EEecCCeeechhhHHHHH
Q 020533          215 VVRSPVHVLSREMVYLGV  232 (325)
Q Consensus       215 ~~r~~~~~~p~~~~~~~~  232 (325)
                      +.|.+ .++|..+.++..
T Consensus       219 i~~~~-~il~~~d~~~~~  235 (486)
T TIGR01423       219 CYRNN-MILRGFDSTLRK  235 (486)
T ss_pred             EecCC-ccccccCHHHHH
Confidence            99998 566765555443

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=99.82  E-value=2.8e-19  Score=177.33  Aligned_cols=171  Identities=19%  Similarity=0.222  Sum_probs=119.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhc----CCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHH
Q 020533            8 VEVIMVGAGTSGLATAACLSLQ----SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF   83 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~----g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (325)
                      .+|+|||+|++|+.+|..|+++    +++|+||++++.++       |..+.+.  ..   +.         . ...+++
T Consensus         4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~-------Y~r~~L~--~~---~~---------~-~~~~~l   61 (847)
T PRK14989          4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA-------YDRVHLS--SY---FS---------H-HTAEEL   61 (847)
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc-------ccCCcch--Hh---Hc---------C-CCHHHc
Confidence            4899999999999999999764    47999999998753       3322211  00   00         0 112233


Q ss_pred             HHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccc
Q 020533           84 IEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC  163 (325)
Q Consensus        84 ~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~  163 (325)
                      .....++.++.++..  +.+++|.+++...    ..|.+.++       .. ++||+||+|||  +.|..|++||.+.. 
T Consensus        62 ~~~~~~~~~~~gI~~--~~g~~V~~Id~~~----~~V~~~~G-------~~-i~yD~LVIATG--s~p~~p~ipG~~~~-  124 (847)
T PRK14989         62 SLVREGFYEKHGIKV--LVGERAITINRQE----KVIHSSAG-------RT-VFYDKLIMATG--SYPWIPPIKGSETQ-  124 (847)
T ss_pred             cCCCHHHHHhCCCEE--EcCCEEEEEeCCC----cEEEECCC-------cE-EECCEEEECCC--CCcCCCCCCCCCCC-
Confidence            333445556667554  8888999887643    45666543       56 89999999999  78999999997642 


Q ss_pred             cCCCCCccEEecCCCCCC-----CCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeech
Q 020533          164 SSATGTGEVIHSTQYKNG-----KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSR  225 (325)
Q Consensus       164 ~~~~~~g~~~~~~~~~~~-----~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~  225 (325)
                            + ++......+.     ....+++++|||+|.+|+|+|..|.+.|.+|+++.+.+ +++|+
T Consensus       125 ------~-v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~-~ll~~  183 (847)
T PRK14989        125 ------D-CFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAP-MLMAE  183 (847)
T ss_pred             ------C-eEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccc-cchhh
Confidence                  2 2222111111     12257899999999999999999999999999999988 45553

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=99.81  E-value=3.9e-18  Score=160.46  Aligned_cols=202  Identities=14%  Similarity=0.108  Sum_probs=120.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC-CCCCceEeecCCCc----cCCCCCCCCCC--CCCCCCH
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQF----CQLPHLPFPSS--YPMFVSR   80 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~-~~y~~~~~~~~~~~----~~~~~~~~~~~--~~~~~~~   80 (325)
                      ++|+|||+|++|+.+|..++++|.+|+++|++. +||++.. .+.|+..+......    .....+.....  .......
T Consensus         2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~   80 (466)
T PRK07845          2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVDL   80 (466)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccCH
Confidence            489999999999999999999999999999875 8887754 33332211100000    00000000000  0001122


Q ss_pred             HHHHHH-----------HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533           81 AQFIEH-----------LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (325)
Q Consensus        81 ~~~~~y-----------l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~  149 (325)
                      ..+.++           +.+.++++++..  +. .++..++...+.....|+..++     +..+ +.||+||+|||  +
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~--~~-g~~~~~~~~~~~~~v~V~~~~g-----~~~~-~~~d~lViATG--s  149 (466)
T PRK07845         81 PAVNARVKALAAAQSADIRARLEREGVRV--IA-GRGRLIDPGLGPHRVKVTTADG-----GEET-LDADVVLIATG--A  149 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCEE--EE-EEEEEeecccCCCEEEEEeCCC-----ceEE-EecCEEEEcCC--C
Confidence            233333           333344455432  33 3444433111234555655433     1147 89999999999  6


Q ss_pred             CCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHH
Q 020533          150 NPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVY  229 (325)
Q Consensus       150 ~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~  229 (325)
                      .|..|+.++.+.        ..++++.+..+. ...+++++|||+|.+|+|+|..|++.|.+|+++.+.+ .++|..+..
T Consensus       150 ~p~~~p~~~~~~--------~~v~~~~~~~~~-~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~~  219 (466)
T PRK07845        150 SPRILPTAEPDG--------ERILTWRQLYDL-DELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRD-RVLPGEDAD  219 (466)
T ss_pred             CCCCCCCCCCCC--------ceEEeehhhhcc-cccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-cCCCCCCHH
Confidence            676655443321        134444443332 2346899999999999999999999999999999988 577765544


Q ss_pred             HH
Q 020533          230 LG  231 (325)
Q Consensus       230 ~~  231 (325)
                      ..
T Consensus       220 ~~  221 (466)
T PRK07845        220 AA  221 (466)
T ss_pred             HH
Confidence            43

>PTZ00058 glutathione reductase; Provisional

Probab=99.81  E-value=4.5e-19  Score=168.68  Aligned_cols=204  Identities=17%  Similarity=0.219  Sum_probs=121.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC-CCCCceEeecCCCccC----CCCCCCCCCCCCCCCH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQFCQ----LPHLPFPSSYPMFVSR   80 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~-~~y~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~   80 (325)
                      .+|||+|||||++|+.+|..+++.|.+|+|+|++ .+||++-+ .+.|+..+........    ...+.....  .-...
T Consensus        47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~--~~~d~  123 (561)
T PTZ00058         47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQ--FSFNL  123 (561)
T ss_pred             ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccccCCCCCchhhhhcccHHHHHHHHhcCCCcc--CccCH
Confidence            4689999999999999999999999999999997 68987643 4444433222111110    000000000  01122


Q ss_pred             HHHHHH-----------HHHHHHHcCCCceeeeCe-EEEE---EE----------E-cCCCCcEEEEEe---ecCCCCce
Q 020533           81 AQFIEH-----------LDHYVSHFNIGPSIRYQR-SVES---AS----------Y-DEATNMWNVKAS---NLLSPGRE  131 (325)
Q Consensus        81 ~~~~~y-----------l~~~a~~~~l~~~i~~~~-~V~~---i~----------~-~~~~~~~~v~~~---~~~~~~~~  131 (325)
                      ..+.++           +.+..++.++..  ..++ ++.+   +.          . ..++...+|...   ...++   
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~--~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g---  198 (561)
T PTZ00058        124 PLLVERRDKYIRRLNDIYRQNLKKDNVEY--FEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDG---  198 (561)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCcEE--EEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCC---
Confidence            222222           223334444432  3332 1111   00          0 001112223210   01111   


Q ss_pred             eEEEEEeCeEEEcccCCCCCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCe
Q 020533          132 IEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAK  211 (325)
Q Consensus       132 ~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~  211 (325)
                       .+ ++||+||+|||  +.|..|++||.+.          ++.+..+.+...  +++|+|||+|.+|+|+|..++..|.+
T Consensus       199 -~~-i~ad~lVIATG--S~P~~P~IpG~~~----------v~ts~~~~~l~~--pk~VvIIGgG~iGlE~A~~l~~~G~~  262 (561)
T PTZ00058        199 -QV-IEGKNILIAVG--NKPIFPDVKGKEF----------TISSDDFFKIKE--AKRIGIAGSGYIAVELINVVNRLGAE  262 (561)
T ss_pred             -cE-EECCEEEEecC--CCCCCCCCCCcee----------EEEHHHHhhccC--CCEEEEECCcHHHHHHHHHHHHcCCc
Confidence             56 89999999999  7888899988642          234433333222  79999999999999999999999999


Q ss_pred             EEEEEecCCeeechhhHHHHHHH
Q 020533          212 TSLVVRSPVHVLSREMVYLGVVL  234 (325)
Q Consensus       212 v~~~~r~~~~~~p~~~~~~~~~~  234 (325)
                      ||++.|.+ .++|..+.++...+
T Consensus       263 Vtli~~~~-~il~~~d~~i~~~l  284 (561)
T PTZ00058        263 SYIFARGN-RLLRKFDETIINEL  284 (561)
T ss_pred             EEEEEecc-cccccCCHHHHHHH
Confidence            99999988 67776665554433

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.81  E-value=6e-19  Score=165.98  Aligned_cols=201  Identities=16%  Similarity=0.165  Sum_probs=118.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC-CCCCceEeecCCCccC-CCC---CCCCCCCCCCCCHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQFCQ-LPH---LPFPSSYPMFVSRA   81 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~-~~y~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~   81 (325)
                      +|||+||||||+|+++|..+++.|.+|+|+|+++.+||++.+ .+.|+..+......+. ...   ..+.-....-....
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~~   82 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNLA   82 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCHH
Confidence            489999999999999999999999999999988889998643 3344322111111110 000   00000000111222


Q ss_pred             HHHHHHHH-----------HHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533           82 QFIEHLDH-----------YVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (325)
Q Consensus        82 ~~~~yl~~-----------~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~  150 (325)
                      ++.++...           ..+..++..  ..+.    .+.. +.+.+.|...++     +..+ ++||+||+|||  +.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~g~----a~~~-~~~~v~v~~~~g-----~~~~-~~~d~lVIATG--s~  147 (466)
T PRK06115         83 QMMKQKDESVEALTKGVEFLFRKNKVDW--IKGW----GRLD-GVGKVVVKAEDG-----SETQ-LEAKDIVIATG--SE  147 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEEE----EEEc-cCCEEEEEcCCC-----ceEE-EEeCEEEEeCC--CC
Confidence            32222222           222223221  2211    1222 124444544332     1257 89999999999  55


Q ss_pred             CCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHHH
Q 020533          151 PFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYL  230 (325)
Q Consensus       151 p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~~  230 (325)
                      |.  .+||.+..      ...++++..... ....+++++|||+|.+|+|+|..+++.|.+|+++.|.+ .++|..+.+.
T Consensus       148 p~--~ipg~~~~------~~~~~~~~~~~~-~~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~-~il~~~d~~~  217 (466)
T PRK06115        148 PT--PLPGVTID------NQRIIDSTGALS-LPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLD-RICPGTDTET  217 (466)
T ss_pred             CC--CCCCCCCC------CCeEECHHHHhC-CccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC-CCCCCCCHHH
Confidence            53  35665421      122444433332 22357999999999999999999999999999999988 6777655444


Q ss_pred             HH
Q 020533          231 GV  232 (325)
Q Consensus       231 ~~  232 (325)
                      ..
T Consensus       218 ~~  219 (466)
T PRK06115        218 AK  219 (466)
T ss_pred             HH
Confidence            43

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=99.81  E-value=3.6e-19  Score=164.32  Aligned_cols=171  Identities=18%  Similarity=0.253  Sum_probs=109.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCC--CeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSI--PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~--~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      .+|+|||||++|+.+|..|++.+.  +|+|+++++...       |...  ..++.+..-   ...+  ..+...     
T Consensus         4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~-------y~r~--~l~~~~~~~---~~~~--~~~~~~-----   64 (396)
T PRK09754          4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP-------YERP--PLSKSMLLE---DSPQ--LQQVLP-----   64 (396)
T ss_pred             CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC-------CCCC--CCCHHHHCC---CCcc--ccccCC-----
Confidence            579999999999999999999876  799999987542       2111  011100000   0000  000000     


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~  165 (325)
                        .++..+.++.  ++.++.|..++.+.    ..|.+.++       .+ +.||+||+|||  +.|+.|++++...    
T Consensus        65 --~~~~~~~~i~--~~~g~~V~~id~~~----~~v~~~~g-------~~-~~yd~LViATG--s~~~~~p~~~~~~----  122 (396)
T PRK09754         65 --ANWWQENNVH--LHSGVTIKTLGRDT----RELVLTNG-------ES-WHWDQLFIATG--AAARPLPLLDALG----  122 (396)
T ss_pred             --HHHHHHCCCE--EEcCCEEEEEECCC----CEEEECCC-------CE-EEcCEEEEccC--CCCCCCCCCCcCC----
Confidence              1222345544  47888899887653    44666543       56 89999999999  6666665554321    


Q ss_pred             CCCCccEEecCCCCC-----CCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeec
Q 020533          166 ATGTGEVIHSTQYKN-----GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLS  224 (325)
Q Consensus       166 ~~~~g~~~~~~~~~~-----~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p  224 (325)
                          ..++......+     .....+++++|||+|.+|+|+|..|.+.|.+||++.+.+ .+++
T Consensus       123 ----~~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~~l~  181 (396)
T PRK09754        123 ----ERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAA-TVMG  181 (396)
T ss_pred             ----CCEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-cchh
Confidence                11222111111     112257899999999999999999999999999999988 4444

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=99.81  E-value=1.6e-18  Score=162.62  Aligned_cols=176  Identities=18%  Similarity=0.289  Sum_probs=117.4

Q ss_pred             eEEEECCChHHHHHHHHHHhcC--CCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            9 EVIMVGAGTSGLATAACLSLQS--IPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g--~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      +|+|||||++|+++|..|++.+  .+|+|||+++..+  |...              .++.+.    ...+....++..+
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~--~~~~--------------~~~~~~----~~~~~~~~~~~~~   61 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS--FGAC--------------GLPYFV----GGFFDDPNTMIAR   61 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce--eecC--------------CCceEe----ccccCCHHHhhcC
Confidence            7999999999999999999875  4899999998653  1100              000000    0011223344444


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA  166 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~~  166 (325)
                      ..+.++++++.  ++++++|++++.++  ..  |++.+..++  .... +.||+||+|||  +.|..|.+||.+.-    
T Consensus        62 ~~~~~~~~gv~--~~~~~~V~~id~~~--~~--v~~~~~~~~--~~~~-~~yd~lviAtG--~~~~~~~i~g~~~~----  126 (444)
T PRK09564         62 TPEEFIKSGID--VKTEHEVVKVDAKN--KT--ITVKNLKTG--SIFN-DTYDKLMIATG--ARPIIPPIKNINLE----  126 (444)
T ss_pred             CHHHHHHCCCe--EEecCEEEEEECCC--CE--EEEEECCCC--CEEE-ecCCEEEECCC--CCCCCCCCCCcCCC----
Confidence            45556667755  47899999998754  33  444432111  1123 34999999999  77888888887531    


Q ss_pred             CCCccEEecCCCCCC-------CCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeec
Q 020533          167 TGTGEVIHSTQYKNG-------KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLS  224 (325)
Q Consensus       167 ~~~g~~~~~~~~~~~-------~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p  224 (325)
                          .+++...+.+.       ....+++|+|||+|.+|+|+|..+.+.|.+|+++.+.+ .++|
T Consensus       127 ----~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~  186 (444)
T PRK09564        127 ----NVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLED-RILP  186 (444)
T ss_pred             ----CEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCc-ccCc
Confidence                23433332211       12357899999999999999999999999999999887 4444

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=99.81  E-value=4.4e-19  Score=165.00  Aligned_cols=182  Identities=19%  Similarity=0.218  Sum_probs=112.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      .+++|+|||||++|+.+|+.|.+.+.+|+|||+++..-       |..+               ++..........++..
T Consensus         9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~-------~~~~---------------l~~~~~g~~~~~~~~~   66 (424)
T PTZ00318          9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHML-------FTPL---------------LPQTTTGTLEFRSICE   66 (424)
T ss_pred             CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcc-------hhhh---------------HHHhcccCCChHHhHH
Confidence            35789999999999999999987788999999987421       1100               0000011122334444


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecC----CCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccc
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLL----SPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCS  161 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~----~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~  161 (325)
                      .+...++.++..   ....+|++++.++  ....+......    .   ...+ +.||+||+|||  +.+..|.+||.++
T Consensus        67 ~~~~~~~~~~~~---~i~~~V~~Id~~~--~~v~~~~~~~~~~~~~---~g~~-i~yD~LViAtG--s~~~~~~ipG~~e  135 (424)
T PTZ00318         67 PVRPALAKLPNR---YLRAVVYDVDFEE--KRVKCGVVSKSNNANV---NTFS-VPYDKLVVAHG--ARPNTFNIPGVEE  135 (424)
T ss_pred             HHHHHhccCCeE---EEEEEEEEEEcCC--CEEEEecccccccccC---CceE-ecCCEEEECCC--cccCCCCCCCHHH
Confidence            455556555543   5667899998754  44444221110    1   1157 89999999999  7788888888754


Q ss_pred             cccCCCCCccEEecCCC-------------CC-C--CCCCCCeEEEECcCCCHHHHHHHHhhc--------------cCe
Q 020533          162 FCSSATGTGEVIHSTQY-------------KN-G--KPYGGKNVLVVGSGNSGMEIALDLANH--------------AAK  211 (325)
Q Consensus       162 ~~~~~~~~g~~~~~~~~-------------~~-~--~~~~~~~v~VvG~G~s~~e~a~~l~~~--------------~~~  211 (325)
                      ..  .. -..+-+...+             .+ +  ...+.++++|||+|.+|+|+|..|+..              +.+
T Consensus       136 ~~--~~-~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~  212 (424)
T PTZ00318        136 RA--FF-LKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECK  212 (424)
T ss_pred             cC--CC-CCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCE
Confidence            20  00 0000000000             00 0  011235899999999999999999863              578


Q ss_pred             EEEEEecCCeeec
Q 020533          212 TSLVVRSPVHVLS  224 (325)
Q Consensus       212 v~~~~r~~~~~~p  224 (325)
                      |+++++.+ .++|
T Consensus       213 Vtlv~~~~-~ll~  224 (424)
T PTZ00318        213 VTVLEAGS-EVLG  224 (424)
T ss_pred             EEEEcCCC-cccc
Confidence            99999987 3444

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=99.81  E-value=2.5e-19  Score=161.33  Aligned_cols=223  Identities=18%  Similarity=0.210  Sum_probs=144.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcC--CCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI   84 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g--~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (325)
                      +++|||||||++|+.+|..|.++.  .+++++|+++..-       +..+.               ++-...-.+..++.
T Consensus         3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl-------~~plL---------------~eva~g~l~~~~i~   60 (405)
T COG1252           3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL-------FTPLL---------------YEVATGTLSESEIA   60 (405)
T ss_pred             CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc-------cchhh---------------hhhhcCCCChhhee
Confidence            468999999999999999999974  8999999998521       11000               00011223344555


Q ss_pred             HHHHHHHHHcC-CCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccc
Q 020533           85 EHLDHYVSHFN-IGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC  163 (325)
Q Consensus        85 ~yl~~~a~~~~-l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~  163 (325)
                      .-++..+...+ +.   ....+|++|+.+.    -+|++.+.       .. +.||+||+|+|  +.+..+.+||..+++
T Consensus        61 ~p~~~~~~~~~~v~---~~~~~V~~ID~~~----k~V~~~~~-------~~-i~YD~LVvalG--s~~~~fgi~G~~E~a  123 (405)
T COG1252          61 IPLRALLRKSGNVQ---FVQGEVTDIDRDA----KKVTLADL-------GE-ISYDYLVVALG--SETNYFGIPGAAEYA  123 (405)
T ss_pred             ccHHHHhcccCceE---EEEEEEEEEcccC----CEEEeCCC-------cc-ccccEEEEecC--CcCCcCCCCCHHHhC
Confidence            55666666444 22   4556899998765    45777763       56 89999999999  889999999987651


Q ss_pred             -------cCCCCCccEEecCCCCC-CCC-CCCCeEEEECcCCCHHHHHHHHhhccC-------------eEEEEEecCCe
Q 020533          164 -------SSATGTGEVIHSTQYKN-GKP-YGGKNVLVVGSGNSGMEIALDLANHAA-------------KTSLVVRSPVH  221 (325)
Q Consensus       164 -------~~~~~~g~~~~~~~~~~-~~~-~~~~~v~VvG~G~s~~e~a~~l~~~~~-------------~v~~~~r~~~~  221 (325)
                             ++...+.++....+-.+ ... ..-.+++|||+|.+|+|+|.+|++...             +|+++++.| .
T Consensus       124 ~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p-~  202 (405)
T COG1252         124 FGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGP-R  202 (405)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCc-h
Confidence                   00000001110000000 000 112379999999999999999987632             677777777 4


Q ss_pred             eechhhHHHHHHHHhhCCHHHHHHHHHHHHHHHhcCccccCCCCCCCCchhhhhccCceeeeChhhhhhhhCCceEEecC
Q 020533          222 VLSREMVYLGVVLFKYVPFGWVDTLMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQSEQQ  301 (325)
Q Consensus       222 ~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~~~~~  301 (325)
                      +||.....++                                                     ....+.|.+-+|++..+
T Consensus       203 ILp~~~~~l~-----------------------------------------------------~~a~~~L~~~GV~v~l~  229 (405)
T COG1252         203 ILPMFPPKLS-----------------------------------------------------KYAERALEKLGVEVLLG  229 (405)
T ss_pred             hccCCCHHHH-----------------------------------------------------HHHHHHHHHCCCEEEcC
Confidence            5554333222                                                     22445577778888887


Q ss_pred             --CeeeecCceEEeeecc-eecCCC
Q 020533          302 --NSQIGAQTRTELLLKT-WLGTDT  323 (325)
Q Consensus       302 --i~~~~~~~~v~~~dg~-~~~~d~  323 (325)
                        |+++++++ |++++|. ++++||
T Consensus       230 ~~Vt~v~~~~-v~~~~g~~~I~~~t  253 (405)
T COG1252         230 TPVTEVTPDG-VTLKDGEEEIPADT  253 (405)
T ss_pred             CceEEECCCc-EEEccCCeeEecCE
Confidence              88988876 7788887 488876

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=99.80  E-value=6e-19  Score=165.02  Aligned_cols=165  Identities=19%  Similarity=0.226  Sum_probs=115.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      ..++|+|||||++||++|..|++.|++|+|||+.+.+||.+...               ++.         +....++.+
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g---------------ip~---------~~~~~~~~~  187 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYG---------------IPE---------FRLPKEIVV  187 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeec---------------CCC---------ccCCHHHHH
Confidence            46799999999999999999999999999999999999875421               111         111235555


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~  165 (325)
                      ...+.++++++..  ++++.+.          ..+.+.+        .. ..+|+||+|||. +.|..|.+||.+.    
T Consensus       188 ~~~~~l~~~gv~~--~~~~~v~----------~~v~~~~--------~~-~~yd~viiAtGa-~~p~~~~ipG~~~----  241 (449)
T TIGR01316       188 TEIKTLKKLGVTF--RMNFLVG----------KTATLEE--------LF-SQYDAVFIGTGA-GLPKLMNIPGEEL----  241 (449)
T ss_pred             HHHHHHHhCCcEE--EeCCccC----------CcCCHHH--------HH-hhCCEEEEeCCC-CCCCcCCCCCCCC----
Confidence            5555666677543  6666431          1233332        23 468999999995 2678888888753    


Q ss_pred             CCCCccEEecCCCC--------------CCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeec
Q 020533          166 ATGTGEVIHSTQYK--------------NGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLS  224 (325)
Q Consensus       166 ~~~~g~~~~~~~~~--------------~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p  224 (325)
                         .+ +++..++.              ......+++|+|||+|++|+|+|..+.+.|.+||+++|++..-+|
T Consensus       242 ---~g-v~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~  310 (449)
T TIGR01316       242 ---CG-VYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMT  310 (449)
T ss_pred             ---CC-cEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCC
Confidence               22 23222111              112346899999999999999999999999999999998743333

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PLN02546 glutathione reductase

Probab=99.80  E-value=1.4e-19  Score=172.12  Aligned_cols=195  Identities=15%  Similarity=0.157  Sum_probs=120.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEec---------CCCCCCccCC-CCCCceEeecCCCcc----CCCCCCCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILER---------ENCYASIWKK-YSYDRLRLHLAKQFC----QLPHLPFPS   72 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~---------~~~~Gg~w~~-~~y~~~~~~~~~~~~----~~~~~~~~~   72 (325)
                      .|||+|||+|++|+.+|..++++|.+|+|+|+         ...+||++-+ .+.|.-.+.......    ....+.+..
T Consensus        79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~~  158 (558)
T PLN02546         79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWKY  158 (558)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCccc
Confidence            48999999999999999999999999999996         2467887754 333332211110000    000000000


Q ss_pred             CCCCCCCHHH-----------HHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeE
Q 020533           73 SYPMFVSRAQ-----------FIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFL  141 (325)
Q Consensus        73 ~~~~~~~~~~-----------~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~v  141 (325)
                      ....-.....           +.+++.+..++.++..  +. .+++.++.    .  +|.+. +       .. +.||+|
T Consensus       159 ~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~--i~-G~a~~vd~----~--~V~v~-G-------~~-~~~D~L  220 (558)
T PLN02546        159 ETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTL--IE-GRGKIVDP----H--TVDVD-G-------KL-YTARNI  220 (558)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEE--EE-eEEEEccC----C--EEEEC-C-------EE-EECCEE
Confidence            0000112222           2333444444445432  22 23333321    2  34442 1       57 899999


Q ss_pred             EEcccCCCCCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCe
Q 020533          142 VVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVH  221 (325)
Q Consensus       142 IiAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~  221 (325)
                      |+|||  +.|..|++||.+..          +++..... ....+++|+|||+|.+|+|+|..++..+.+|+++.|.+ .
T Consensus       221 VIATG--s~p~~P~IpG~~~v----------~~~~~~l~-~~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~-~  286 (558)
T PLN02546        221 LIAVG--GRPFIPDIPGIEHA----------IDSDAALD-LPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQK-K  286 (558)
T ss_pred             EEeCC--CCCCCCCCCChhhc----------cCHHHHHh-ccccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecc-c
Confidence            99999  88889999987532          22222211 22357899999999999999999999999999999988 5


Q ss_pred             eechhhHHHHHH
Q 020533          222 VLSREMVYLGVV  233 (325)
Q Consensus       222 ~~p~~~~~~~~~  233 (325)
                      ++|..+.++...
T Consensus       287 il~~~d~~~~~~  298 (558)
T PLN02546        287 VLRGFDEEVRDF  298 (558)
T ss_pred             cccccCHHHHHH
Confidence            667655554433

>PRK07846 mycothione reductase; Reviewed

Probab=99.79  E-value=1.4e-18  Score=162.74  Aligned_cols=197  Identities=14%  Similarity=0.140  Sum_probs=117.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC-CCCCceEeecCCCccC----CCCCCCCCCCCCCCCHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQFCQ----LPHLPFPSSYPMFVSRA   81 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~-~~y~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~   81 (325)
                      +||++|||+||+|..+|..  ..|.+|+|+|+. .+||++-+ .+.|+..+........    ...+..... ..-....
T Consensus         1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~-~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~~   76 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKG-TFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAE-LDGVRWP   76 (451)
T ss_pred             CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCC-CCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCC-CCcCCHH
Confidence            3899999999999998876  459999999985 58887654 3444332111111100    000000000 0123455


Q ss_pred             HHHHHHHHHHHHcC---CCce-e-eeCeEEEE--EEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533           82 QFIEHLDHYVSHFN---IGPS-I-RYQRSVES--ASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (325)
Q Consensus        82 ~~~~yl~~~a~~~~---l~~~-i-~~~~~V~~--i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p  154 (325)
                      ++.++.....+++.   .... + ..+.++..  ....   +..+|++.++       .+ ++||+||+|||  +.|..|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~---~~~~V~v~~g-------~~-~~~d~lViATG--s~p~~p  143 (451)
T PRK07846         77 DIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFI---GPKTLRTGDG-------EE-ITADQVVIAAG--SRPVIP  143 (451)
T ss_pred             HHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEe---cCCEEEECCC-------CE-EEeCEEEEcCC--CCCCCC
Confidence            66666655544431   1100 0 01111111  0111   2234655432       46 89999999999  788999


Q ss_pred             CCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHHH
Q 020533          155 DIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYL  230 (325)
Q Consensus       155 ~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~~  230 (325)
                      ++||.+..        .+..+.+... ....+++++|||+|.+|+|+|..+++.|.+|+++.|++ .++|..+.++
T Consensus       144 ~i~g~~~~--------~~~~~~~~~~-l~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~ll~~~d~~~  209 (451)
T PRK07846        144 PVIADSGV--------RYHTSDTIMR-LPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSG-RLLRHLDDDI  209 (451)
T ss_pred             CCCCcCCc--------cEEchHHHhh-hhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-ccccccCHHH
Confidence            99886432        1222222221 22346899999999999999999999999999999998 4555544433

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=4.4e-18  Score=137.70  Aligned_cols=177  Identities=16%  Similarity=0.256  Sum_probs=135.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC----CCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN----CYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQ   82 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~----~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (325)
                      ..+|+|||+||++..+|.++++..++.++||-..    ..||..          ......-.||.|      |.-....+
T Consensus         8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQL----------tTTT~veNfPGF------Pdgi~G~~   71 (322)
T KOG0404|consen    8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQL----------TTTTDVENFPGF------PDGITGPE   71 (322)
T ss_pred             eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCcee----------eeeeccccCCCC------CcccccHH
Confidence            3489999999999999999999999999999643    123321          111111122222      23356789


Q ss_pred             HHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCc-c-
Q 020533           83 FIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGL-C-  160 (325)
Q Consensus        83 ~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~-~-  160 (325)
                      +.+.+++.++++|..   .+...|.+++...  ..|.+.++.        +. +.+|.||+|||.  ..+...+||. + 
T Consensus        72 l~d~mrkqs~r~Gt~---i~tEtVskv~~ss--kpF~l~td~--------~~-v~~~avI~atGA--sAkRl~~pg~ge~  135 (322)
T KOG0404|consen   72 LMDKMRKQSERFGTE---IITETVSKVDLSS--KPFKLWTDA--------RP-VTADAVILATGA--SAKRLHLPGEGEG  135 (322)
T ss_pred             HHHHHHHHHHhhcce---eeeeehhhccccC--CCeEEEecC--------Cc-eeeeeEEEeccc--ceeeeecCCCCcc
Confidence            999999999999987   5667788888765  678888765        56 899999999995  4444556665 3 


Q ss_pred             ccccCCCCCccEEecCCCCCCCC--CCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCe
Q 020533          161 SFCSSATGTGEVIHSTQYKNGKP--YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVH  221 (325)
Q Consensus       161 ~~~~~~~~~g~~~~~~~~~~~~~--~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~  221 (325)
                      .|      ..+-+.++..++...  +++|-.+|||+|.+|+|-|..|...+++|++++|+++.
T Consensus       136 ~f------WqrGiSaCAVCDGaapifrnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~f  192 (322)
T KOG0404|consen  136 EF------WQRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHF  192 (322)
T ss_pred             hH------HhcccchhhcccCcchhhcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhh
Confidence            36      667777777777554  89999999999999999999999999999999999953

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=99.78  E-value=2.9e-18  Score=169.72  Aligned_cols=171  Identities=25%  Similarity=0.322  Sum_probs=117.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      ..++|+||||||+||++|..|+++|++|+|||+.+.+||.++..               ++.         +....++.+
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~---------------IP~---------~Rlp~evL~  593 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNI---------------IPQ---------FRIPAELIQ  593 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeee---------------ccc---------ccccHHHHH
Confidence            45799999999999999999999999999999999999876531               111         111234455


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~  165 (325)
                      +..+.+.++++.  +++++.+ .+..           +..       .. ..+|+||+|||.. .+..+.++|.+.    
T Consensus       594 ~die~l~~~GVe--~~~gt~V-di~l-----------e~L-------~~-~gYDaVILATGA~-~~~~l~IpG~~~----  646 (1019)
T PRK09853        594 HDIEFVKAHGVK--FEFGCSP-DLTV-----------EQL-------KN-EGYDYVVVAIGAD-KNGGLKLEGGNQ----  646 (1019)
T ss_pred             HHHHHHHHcCCE--EEeCcee-EEEh-----------hhh-------ee-ccCCEEEECcCCC-CCCCCCCCCccC----
Confidence            555666677754  4888766 2211           111       34 5689999999963 344456776541    


Q ss_pred             CCCCccEEecCCCCC------CCCCCCCeEEEECcCCCHHHHHHHHhhcc--CeEEEEEecCCeeechhhHHHHH
Q 020533          166 ATGTGEVIHSTQYKN------GKPYGGKNVLVVGSGNSGMEIALDLANHA--AKTSLVVRSPVHVLSREMVYLGV  232 (325)
Q Consensus       166 ~~~~g~~~~~~~~~~------~~~~~~~~v~VvG~G~s~~e~a~~l~~~~--~~v~~~~r~~~~~~p~~~~~~~~  232 (325)
                           .++++.++..      .....+++|+|||+|++|+|+|..+.+.+  .+|++++|++...+|....++..
T Consensus       647 -----gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA~~eEle~  716 (1019)
T PRK09853        647 -----NVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWREEYEE  716 (1019)
T ss_pred             -----CceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccccHHHHHH
Confidence                 1222221111      12235899999999999999999998884  48999999986677766554433

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=99.77  E-value=1.4e-18  Score=167.48  Aligned_cols=210  Identities=14%  Similarity=0.130  Sum_probs=125.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecC-CCCCCccCC-CCCCceEeecC-------C-----CccCCCC--CC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERE-NCYASIWKK-YSYDRLRLHLA-------K-----QFCQLPH--LP   69 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~-~~~Gg~w~~-~~y~~~~~~~~-------~-----~~~~~~~--~~   69 (325)
                      .+|||+|||+|++|+.+|..+++.|.+|+|||+. +.+||++-+ .+.|+..+...       +     ..+.+..  ++
T Consensus       115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~~  194 (659)
T PTZ00153        115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAFK  194 (659)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeecccc
Confidence            3689999999999999999999999999999975 468997744 33332211100       0     0011110  00


Q ss_pred             ------CC--CC--CCCCCCHHHHHHHHHHHHHHcCC--Cc-----eeeeCeEEEEEEEcCC--CCcEEEEEeecCCCCc
Q 020533           70 ------FP--SS--YPMFVSRAQFIEHLDHYVSHFNI--GP-----SIRYQRSVESASYDEA--TNMWNVKASNLLSPGR  130 (325)
Q Consensus        70 ------~~--~~--~~~~~~~~~~~~yl~~~a~~~~l--~~-----~i~~~~~V~~i~~~~~--~~~~~v~~~~~~~~~~  130 (325)
                            .+  +.  ...-.....+.++.+...++..-  ..     .+...++.+.+.....  .+..+|+...  .+  
T Consensus       195 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~~--~g--  270 (659)
T PTZ00153        195 NGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSEK--SG--  270 (659)
T ss_pred             ccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEcc--CC--
Confidence                  00  00  01123556666766665554310  00     0011122222222110  0112233321  11  


Q ss_pred             eeEEEEEeCeEEEcccCCCCCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccC
Q 020533          131 EIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAA  210 (325)
Q Consensus       131 ~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~  210 (325)
                        .+ +.+|+||+|||  +.|..|++++.+..        .++.+.+... ....+++|+|||+|.+|+|+|..++..|.
T Consensus       271 --~~-i~ad~lIIATG--S~P~~P~~~~~~~~--------~V~ts~d~~~-l~~lpk~VvIVGgG~iGvE~A~~l~~~G~  336 (659)
T PTZ00153        271 --KE-FKVKNIIIATG--STPNIPDNIEVDQK--------SVFTSDTAVK-LEGLQNYMGIVGMGIIGLEFMDIYTALGS  336 (659)
T ss_pred             --EE-EECCEEEEcCC--CCCCCCCCCCCCCC--------cEEehHHhhh-hhhcCCceEEECCCHHHHHHHHHHHhCCC
Confidence              57 89999999999  78888776554322        3444433322 22347899999999999999999999999


Q ss_pred             eEEEEEecCCeeechhhHHHHHHH
Q 020533          211 KTSLVVRSPVHVLSREMVYLGVVL  234 (325)
Q Consensus       211 ~v~~~~r~~~~~~p~~~~~~~~~~  234 (325)
                      +||++.+.+ .++|..+.++...+
T Consensus       337 eVTLIe~~~-~ll~~~d~eis~~l  359 (659)
T PTZ00153        337 EVVSFEYSP-QLLPLLDADVAKYF  359 (659)
T ss_pred             eEEEEeccC-cccccCCHHHHHHH
Confidence            999999998 67776666554443

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=99.77  E-value=2.8e-18  Score=170.09  Aligned_cols=169  Identities=24%  Similarity=0.326  Sum_probs=118.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      ..++|+||||||+||++|..|+++|++|+|||+.+.+||.+.+               .++.+.+|         .++.+
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~---------------gip~~rlp---------~~~~~  485 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKY---------------GIPEFRLP---------KKIVD  485 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeee---------------cCCCCCCC---------HHHHH
Confidence            4679999999999999999999999999999999989987542               12222111         23455


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~  165 (325)
                      ...+.++++++..  +.++.+.          ..+++++.       .. ..||+||+|||. +.|+.|++||.+.    
T Consensus       486 ~~~~~l~~~gv~~--~~~~~v~----------~~v~~~~l-------~~-~~ydavvlAtGa-~~~~~l~ipG~~~----  540 (752)
T PRK12778        486 VEIENLKKLGVKF--ETDVIVG----------KTITIEEL-------EE-EGFKGIFIASGA-GLPNFMNIPGENS----  540 (752)
T ss_pred             HHHHHHHHCCCEE--ECCCEEC----------CcCCHHHH-------hh-cCCCEEEEeCCC-CCCCCCCCCCCCC----
Confidence            5555666777544  7776541          11333322       34 578999999995 2577788888653    


Q ss_pred             CCCCccEEecCCCC-------------CCCCCCCCeEEEECcCCCHHHHHHHHhhccCe-EEEEEecCCeeechhh
Q 020533          166 ATGTGEVIHSTQYK-------------NGKPYGGKNVLVVGSGNSGMEIALDLANHAAK-TSLVVRSPVHVLSREM  227 (325)
Q Consensus       166 ~~~~g~~~~~~~~~-------------~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~-v~~~~r~~~~~~p~~~  227 (325)
                         .| ++++.++.             ......+++|+|||+|++|+|+|..+.+.|.+ ||+++|++...+|...
T Consensus       541 ---~g-V~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~  612 (752)
T PRK12778        541 ---NG-VMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARL  612 (752)
T ss_pred             ---CC-cEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCH
Confidence               12 22222111             11234689999999999999999999999987 9999998755555543

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=99.77  E-value=5.8e-18  Score=159.08  Aligned_cols=197  Identities=15%  Similarity=0.182  Sum_probs=118.2

Q ss_pred             eEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccC-CCCCCceEeecCCCccC----CCCCCCCCC-CCCCCCHHH
Q 020533            9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHLAKQFCQ----LPHLPFPSS-YPMFVSRAQ   82 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~-~~~y~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~   82 (325)
                      +|+||||||+|+++|..|++.|.+|+|+|+++ +||++. ..+.|+..+......+.    ...+..+.. .....+..+
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~-~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~   80 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD-LGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQ   80 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc-ccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHH
Confidence            79999999999999999999999999999975 677654 33444322110000000    000000000 001223445


Q ss_pred             HHHHHHHHHHH-----------cCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCC
Q 020533           83 FIEHLDHYVSH-----------FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNP  151 (325)
Q Consensus        83 ~~~yl~~~a~~-----------~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p  151 (325)
                      +.++..+..++           .++.   .+..++..+    +.+...|...++      ..+ ++||+||+|||  +.|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~g~a~~~----~~~~v~v~~~~~------~~~-~~~d~lviATG--s~p  144 (458)
T PRK06912         81 MQARKSQIVTQLVQGIQYLMKKNKIK---VIQGKASFE----TDHRVRVEYGDK------EEV-VDAEQFIIAAG--SEP  144 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCcE---EEEEEEEEc----cCCEEEEeeCCC------cEE-EECCEEEEeCC--CCC
Confidence            54444433332           2222   122222222    124444544221      157 89999999999  677


Q ss_pred             CCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHHHH
Q 020533          152 FTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLG  231 (325)
Q Consensus       152 ~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~~~  231 (325)
                      ..|++++.+..        .++++.+... ....+++++|||+|.+|+|+|..+.+.|.+|+++.|.+ .++|..+.++.
T Consensus       145 ~~~p~~~~~~~--------~v~~~~~~~~-~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~-~ll~~~d~e~~  214 (458)
T PRK06912        145 TELPFAPFDGK--------WIINSKHAMS-LPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAP-QLLPGEDEDIA  214 (458)
T ss_pred             CCCCCCCCCCC--------eEEcchHHhC-ccccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CcCccccHHHH
Confidence            76666664321        2444433322 22346899999999999999999999999999999998 67776555444


Q ss_pred             H
Q 020533          232 V  232 (325)
Q Consensus       232 ~  232 (325)
                      .
T Consensus       215 ~  215 (458)
T PRK06912        215 H  215 (458)
T ss_pred             H
Confidence            3

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=99.76  E-value=3.6e-18  Score=160.45  Aligned_cols=167  Identities=20%  Similarity=0.271  Sum_probs=117.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      ..++|+|||||++|+++|..|+++|++|+|+|+.+.+||.+...               ++         .+....++.+
T Consensus       139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~g---------------ip---------~~~~~~~~~~  194 (457)
T PRK11749        139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYG---------------IP---------EFRLPKDIVD  194 (457)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeecc---------------CC---------CccCCHHHHH
Confidence            45799999999999999999999999999999999998875421               11         1112236667


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~  165 (325)
                      +..+.++++++..  ++++.+..          .+.+.+        .. +.||+||+|||.. .|..+.+||.+.    
T Consensus       195 ~~~~~l~~~gv~~--~~~~~v~~----------~v~~~~--------~~-~~~d~vvlAtGa~-~~~~~~i~G~~~----  248 (457)
T PRK11749        195 REVERLLKLGVEI--RTNTEVGR----------DITLDE--------LR-AGYDAVFIGTGAG-LPRFLGIPGENL----  248 (457)
T ss_pred             HHHHHHHHcCCEE--EeCCEECC----------ccCHHH--------HH-hhCCEEEEccCCC-CCCCCCCCCccC----
Confidence            7777777777544  77766511          122222        23 6789999999953 466667887653    


Q ss_pred             CCCCccEEecCCCCC--------CCCCCCCeEEEECcCCCHHHHHHHHhhccC-eEEEEEecCCeeechh
Q 020533          166 ATGTGEVIHSTQYKN--------GKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSPVHVLSRE  226 (325)
Q Consensus       166 ~~~~g~~~~~~~~~~--------~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~-~v~~~~r~~~~~~p~~  226 (325)
                         .+ +++..++..        .....+++|+|||+|++|+|+|..+.+.|. +|++++|++...+|..
T Consensus       249 ---~g-v~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~  314 (457)
T PRK11749        249 ---GG-VYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPAS  314 (457)
T ss_pred             ---CC-cEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCC
Confidence               22 233221111        112368999999999999999999999987 8999999875556544

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.76  E-value=9.4e-18  Score=144.09  Aligned_cols=219  Identities=17%  Similarity=0.167  Sum_probs=138.1

Q ss_pred             CCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC-CCCCceEeecCCC----ccCCCCCCCCCCCCCC
Q 020533            3 EQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQ----FCQLPHLPFPSSYPMF   77 (325)
Q Consensus         3 ~~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~-~~y~~~~~~~~~~----~~~~~~~~~~~~~~~~   77 (325)
                      .....+|.+|||||.+|+++|++.+..|.++.++|..-.+||++-. .+.|.-.+.....    +.+..++.++.....-
T Consensus        16 ~~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~   95 (478)
T KOG0405|consen   16 ADVKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGS   95 (478)
T ss_pred             ccccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccC
Confidence            3345789999999999999999999999999999999889998743 3333322221111    1111122222211111


Q ss_pred             CCHHHHHHHHHHHHHHc-CCCceeeeCeEEEEEEE---cCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533           78 VSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASY---DEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (325)
Q Consensus        78 ~~~~~~~~yl~~~a~~~-~l~~~i~~~~~V~~i~~---~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~  153 (325)
                      ..+..+.+--.++..++ ++..+..-+..|.-++-   -..++...|...++     .... ++++++++|+|  +.|.+
T Consensus        96 fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~-----~~~~-Ytak~iLIAtG--g~p~~  167 (478)
T KOG0405|consen   96 FDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDG-----TKIV-YTAKHILIATG--GRPII  167 (478)
T ss_pred             CcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCC-----eeEE-EecceEEEEeC--CccCC
Confidence            22333333222222221 11111122223332211   11234455555554     2256 89999999999  88999


Q ss_pred             CCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHHHHHH
Q 020533          154 PDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVV  233 (325)
Q Consensus       154 p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~~~~~  233 (325)
                      |++||.+.-          +.|..+.+ .+..+||++|||+|++|+|+|.-++.+|.+++++.|.. .+|..++..++..
T Consensus       168 PnIpG~E~g----------idSDgff~-Lee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~-kvLR~FD~~i~~~  235 (478)
T KOG0405|consen  168 PNIPGAELG----------IDSDGFFD-LEEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQE-KVLRGFDEMISDL  235 (478)
T ss_pred             CCCCchhhc----------cccccccc-hhhcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecc-hhhcchhHHHHHH
Confidence            999997642          55555554 34457999999999999999999999999999999999 6777777766665


Q ss_pred             HHhhCCHH
Q 020533          234 LFKYVPFG  241 (325)
Q Consensus       234 ~~~~~p~~  241 (325)
                      +...+..+
T Consensus       236 v~~~~~~~  243 (478)
T KOG0405|consen  236 VTEHLEGR  243 (478)
T ss_pred             HHHHhhhc
Confidence            55544443

>PLN02852 ferredoxin-NADP+ reductase

Probab=99.76  E-value=1.1e-17  Score=156.05  Aligned_cols=170  Identities=18%  Similarity=0.147  Sum_probs=113.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHh--cCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSL--QSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF   83 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~--~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (325)
                      .+++|+||||||+|+++|..|++  .|++|+|||+.+.+||.+++..-                       +.++....+
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gva-----------------------P~~~~~k~v   81 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVA-----------------------PDHPETKNV   81 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccC-----------------------CCcchhHHH
Confidence            45789999999999999999987  69999999999999987664210                       123333456


Q ss_pred             HHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccc
Q 020533           84 IEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC  163 (325)
Q Consensus        84 ~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~  163 (325)
                      ...+.++++..++..  +.|.++.          ..++.++        .. ..||.||+|||.. .++.+++||.+.  
T Consensus        82 ~~~~~~~~~~~~v~~--~~nv~vg----------~dvtl~~--------L~-~~yDaVIlAtGa~-~~~~l~IpG~d~--  137 (491)
T PLN02852         82 TNQFSRVATDDRVSF--FGNVTLG----------RDVSLSE--------LR-DLYHVVVLAYGAE-SDRRLGIPGEDL--  137 (491)
T ss_pred             HHHHHHHHHHCCeEE--EcCEEEC----------ccccHHH--------Hh-hhCCEEEEecCCC-CCCCCCCCCCCC--
Confidence            666666666655432  4554441          1133332        23 4689999999953 235567888653  


Q ss_pred             cCCCCCccEEecCCC----------CC--CCCCCCCeEEEECcCCCHHHHHHHHhhc--------------------c-C
Q 020533          164 SSATGTGEVIHSTQY----------KN--GKPYGGKNVLVVGSGNSGMEIALDLANH--------------------A-A  210 (325)
Q Consensus       164 ~~~~~~g~~~~~~~~----------~~--~~~~~~~~v~VvG~G~s~~e~a~~l~~~--------------------~-~  210 (325)
                           .| ++...++          ..  .....+++|+|||+|++|+|+|..|.+.                    + .
T Consensus       138 -----~g-V~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~  211 (491)
T PLN02852        138 -----PG-VLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVR  211 (491)
T ss_pred             -----CC-eEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCC
Confidence                 22 2222211          00  0123589999999999999999998775                    4 4


Q ss_pred             eEEEEEecCCeeechhhH
Q 020533          211 KTSLVVRSPVHVLSREMV  228 (325)
Q Consensus       211 ~v~~~~r~~~~~~p~~~~  228 (325)
                      +|++++|++..-++....
T Consensus       212 ~V~iv~RRg~~~~~ft~~  229 (491)
T PLN02852        212 KVYLVGRRGPVQAACTAK  229 (491)
T ss_pred             EEEEEEcCChHhCCCCHH
Confidence            699999998655544333

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=99.75  E-value=1.6e-17  Score=150.92  Aligned_cols=176  Identities=20%  Similarity=0.247  Sum_probs=114.9

Q ss_pred             CCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHH
Q 020533            4 QAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF   83 (325)
Q Consensus         4 ~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (325)
                      +...++|+|||+|++|+++|..|++.|++++++|+.+.+||.+...               ++..        ..+.+.+
T Consensus        15 ~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~---------------~~~~--------~~~~~~~   71 (352)
T PRK12770         15 PPTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFG---------------IPEF--------RIPIERV   71 (352)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeec---------------Cccc--------ccCHHHH
Confidence            3346799999999999999999999999999999999988765321               0000        1123344


Q ss_pred             HHHHHHHHHHcCCCceeeeCeEEEEEEE--cCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccc
Q 020533           84 IEHLDHYVSHFNIGPSIRYQRSVESASY--DEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCS  161 (325)
Q Consensus        84 ~~yl~~~a~~~~l~~~i~~~~~V~~i~~--~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~  161 (325)
                      ...+.++.+ .++.  ++.++.+..+..  ......|.......     +... +.||+||+|||. ..|..|++||.+.
T Consensus        72 ~~~~~~l~~-~~i~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~d~lviAtGs-~~~~~~~ipg~~~  141 (352)
T PRK12770         72 REGVKELEE-AGVV--FHTRTKVCCGEPLHEEEGDEFVERIVSL-----EELV-KKYDAVLIATGT-WKSRKLGIPGEDL  141 (352)
T ss_pred             HHHHHHHHh-CCeE--EecCcEEeeccccccccccccccccCCH-----HHHH-hhCCEEEEEeCC-CCCCcCCCCCccc
Confidence            445555444 4654  477877765432  11112232221111     1135 689999999995 2467788888653


Q ss_pred             cccCCCCCccEEecC--------------CCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCe-EEEEEecCC
Q 020533          162 FCSSATGTGEVIHST--------------QYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAK-TSLVVRSPV  220 (325)
Q Consensus       162 ~~~~~~~~g~~~~~~--------------~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~-v~~~~r~~~  220 (325)
                             .+ ++.+.              .+.....+.+++++|||+|.+|+|+|..+...|.+ |+++.|++.
T Consensus       142 -------~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~  207 (352)
T PRK12770        142 -------PG-VYSALEYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTI  207 (352)
T ss_pred             -------cC-ceeHHHHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecch
Confidence                   11 22111              01111234589999999999999999999988886 999998763

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=1.2e-17  Score=143.40  Aligned_cols=177  Identities=19%  Similarity=0.265  Sum_probs=134.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      ..|||+|||+||+|-++|.+.+++|++.-++-  +++||.-...             +.+..+-    .-.+...+++..
T Consensus       210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a--erfGGQvldT-------------~~IENfI----sv~~teGpkl~~  270 (520)
T COG3634         210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVA--ERFGGQVLDT-------------MGIENFI----SVPETEGPKLAA  270 (520)
T ss_pred             CCceEEEEcCCcchhHHHHHHHhhcchhhhhh--hhhCCeeccc-------------cchhhee----ccccccchHHHH
Confidence            46899999999999999999999999886552  3456542210             1111110    012345678899


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcC-CCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCcccccc
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDE-ATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS  164 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~-~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~  164 (325)
                      .|.+..++|++..  .--.+.++++... ..+...|+++++       .. +.++.+|+|||+.  .+-..+||.++|  
T Consensus       271 ale~Hv~~Y~vDi--mn~qra~~l~~a~~~~~l~ev~l~nG-------av-LkaktvIlstGAr--WRn~nvPGE~e~--  336 (520)
T COG3634         271 ALEAHVKQYDVDV--MNLQRASKLEPAAVEGGLIEVELANG-------AV-LKARTVILATGAR--WRNMNVPGEDEY--  336 (520)
T ss_pred             HHHHHHhhcCchh--hhhhhhhcceecCCCCccEEEEecCC-------ce-eccceEEEecCcc--hhcCCCCchHHH--
Confidence            9999999998764  4444555665532 234677888876       56 8999999999954  444579999999  


Q ss_pred             CCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          165 SATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       165 ~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                          +..-+..+..++...|+||+|+|||+|+||+|.|-+|+....+||++.-.+
T Consensus       337 ----rnKGVayCPHCDGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~  387 (520)
T COG3634         337 ----RNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP  387 (520)
T ss_pred             ----hhCCeeeCCCCCCcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecch
Confidence                888888899999999999999999999999999999999999999988776

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=99.75  E-value=8.8e-18  Score=163.60  Aligned_cols=171  Identities=18%  Similarity=0.251  Sum_probs=117.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      ..++|+|||||++||++|..|++.|++|+|||+++.+||.|+..               ++.         +....++.+
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~g---------------ip~---------~~~~~~~~~  247 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYG---------------IPR---------FRLPESVID  247 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeec---------------CCC---------CCCCHHHHH
Confidence            35799999999999999999999999999999999999987532               111         112234555


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~  165 (325)
                      +..+.+..+++..  ++++.+. .         .++..+        .. ..+|.||+|||.. .+..+.+||.+.    
T Consensus       248 ~~~~~l~~~Gv~i--~~~~~v~-~---------dv~~~~--------~~-~~~DaVilAtGa~-~~~~~~ipG~~~----  301 (652)
T PRK12814        248 ADIAPLRAMGAEF--RFNTVFG-R---------DITLEE--------LQ-KEFDAVLLAVGAQ-KASKMGIPGEEL----  301 (652)
T ss_pred             HHHHHHHHcCCEE--EeCCccc-C---------ccCHHH--------HH-hhcCEEEEEcCCC-CCCCCCCCCcCc----
Confidence            5666667777543  7776541 1         122222        22 3589999999953 234567888643    


Q ss_pred             CCCCccEEecCCCC-----CCCCCCCCeEEEECcCCCHHHHHHHHhhccC-eEEEEEecCCeeechhhHHH
Q 020533          166 ATGTGEVIHSTQYK-----NGKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSPVHVLSREMVYL  230 (325)
Q Consensus       166 ~~~~g~~~~~~~~~-----~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~-~v~~~~r~~~~~~p~~~~~~  230 (325)
                         .+ ++....+.     ......+++|+|||+|++|+|+|..+.+.|. +|++++|++...+|....++
T Consensus       302 ---~g-v~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~ei  368 (652)
T PRK12814        302 ---PG-VISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRAEI  368 (652)
T ss_pred             ---CC-cEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHH
Confidence               23 22221111     1234568999999999999999999999986 69999999865677654433

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=99.75  E-value=1.8e-17  Score=167.30  Aligned_cols=170  Identities=18%  Similarity=0.222  Sum_probs=118.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      ..++|+||||||+||++|..|+++|++|+|||+.+.+||..+..               ++         .+....++.+
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~g---------------ip---------~~rl~~e~~~  484 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYG---------------IP---------SFRLPRDIID  484 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeecc---------------CC---------ccCCCHHHHH
Confidence            35799999999999999999999999999999999988764321               11         2222346667


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~  165 (325)
                      ...+.++++|+..  ++++.+.        ..  ++.+...      .. ..||.||+|||. ..|+.+++||.+.    
T Consensus       485 ~~~~~l~~~Gv~~--~~~~~vg--------~~--~~~~~l~------~~-~~yDaViIATGa-~~pr~l~IpG~~l----  540 (1006)
T PRK12775        485 REVQRLVDIGVKI--ETNKVIG--------KT--FTVPQLM------ND-KGFDAVFLGVGA-GAPTFLGIPGEFA----  540 (1006)
T ss_pred             HHHHHHHHCCCEE--EeCCccC--------Cc--cCHHHHh------hc-cCCCEEEEecCC-CCCCCCCCCCcCC----
Confidence            7777777888654  7775431        11  2222210      13 468999999995 2477788998642    


Q ss_pred             CCCCccEEecCCC--------------CCCCCCCCCeEEEECcCCCHHHHHHHHhhccC-eEEEEEecCCeeechhh
Q 020533          166 ATGTGEVIHSTQY--------------KNGKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSPVHVLSREM  227 (325)
Q Consensus       166 ~~~~g~~~~~~~~--------------~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~-~v~~~~r~~~~~~p~~~  227 (325)
                         .+ +++..++              .+.....||+|+|||+|++|+|+|..+.+.|. .|++++|+...-+|...
T Consensus       541 ---~g-V~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a~~  613 (1006)
T PRK12775        541 ---GQ-VYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPARI  613 (1006)
T ss_pred             ---CC-cEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCCCCH
Confidence               22 3333211              11223468999999999999999999999987 58999988755555443

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=99.73  E-value=5.6e-17  Score=148.27  Aligned_cols=168  Identities=17%  Similarity=0.269  Sum_probs=108.6

Q ss_pred             eEEEECCChHHHHHHHHHHhc---CCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            9 EVIMVGAGTSGLATAACLSLQ---SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~---g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      +|+|||||++|+.+|.+|.++   +.+|+|+|+++..-       |..+               .+..........++..
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~-------~~~~---------------~~~~~~g~~~~~~~~~   58 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTP-------YSGM---------------LPGMIAGHYSLDEIRI   58 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCc-------ccch---------------hhHHHheeCCHHHhcc
Confidence            489999999999999999754   67999999887521       1100               0000011223345655


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~  165 (325)
                      .+.+.++++++.   ....+|++++.+.  .  .|.+.++       .+ +++|+||+|||  +.+..|.+||..+.   
T Consensus        59 ~~~~~~~~~gv~---~~~~~v~~id~~~--~--~V~~~~g-------~~-~~yD~LviAtG--~~~~~~~i~g~~~~---  118 (364)
T TIGR03169        59 DLRRLARQAGAR---FVIAEATGIDPDR--R--KVLLANR-------PP-LSYDVLSLDVG--STTPLSGVEGAADL---  118 (364)
T ss_pred             cHHHHHHhcCCE---EEEEEEEEEeccc--C--EEEECCC-------Cc-ccccEEEEccC--CCCCCCCCCccccc---
Confidence            666777777765   3345888887754  2  5666653       46 89999999999  78888888885432   


Q ss_pred             CCCCccEEec----CC----CCCC--CCCCCCeEEEECcCCCHHHHHHHHhhc----c--CeEEEEEecCCeeec
Q 020533          166 ATGTGEVIHS----TQ----YKNG--KPYGGKNVLVVGSGNSGMEIALDLANH----A--AKTSLVVRSPVHVLS  224 (325)
Q Consensus       166 ~~~~g~~~~~----~~----~~~~--~~~~~~~v~VvG~G~s~~e~a~~l~~~----~--~~v~~~~r~~~~~~p  224 (325)
                         . ..+.+    ..    ....  ....+++|+|||+|.+|+|+|..|+..    +  .+|+++ +.+ .+++
T Consensus       119 ---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~-~~l~  187 (364)
T TIGR03169       119 ---A-VPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGA-SLLP  187 (364)
T ss_pred             ---c-cccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCC-cccc
Confidence               0 00000    00    0000  012357999999999999999999853    3  478888 444 3444

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.73  E-value=9.7e-17  Score=141.26  Aligned_cols=204  Identities=25%  Similarity=0.365  Sum_probs=139.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcC-CCeEEEecCCCCCCccCCCC-CCceEeecC-----------CCccCCCCCCCC-
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQS-IPYVILERENCYASIWKKYS-YDRLRLHLA-----------KQFCQLPHLPFP-   71 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g-~~v~v~e~~~~~Gg~w~~~~-y~~~~~~~~-----------~~~~~~~~~~~~-   71 (325)
                      ..+|++.||-||+-|+.|+.|...+ .+...+||.+.+-  |...+ .++..++++           ...++|-.+-.. 
T Consensus         4 ~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~--WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h   81 (436)
T COG3486           4 EVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFS--WHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEH   81 (436)
T ss_pred             cceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCC--cCCCcccCCccccccchhhhccccCCCCchHHHHHHHHc
Confidence            3589999999999999999999975 6899999998753  66543 344444332           111111000000 


Q ss_pred             -------CCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEc
Q 020533           72 -------SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVA  144 (325)
Q Consensus        72 -------~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiA  144 (325)
                             ..-..++++.|+.+|+++.+.++   ..++|+++|+.|...+.+.....-.. +.++    .. ++|+.||++
T Consensus        82 ~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l---~~~rfg~~V~~i~~~~~d~~~~~~~~-t~~~----~~-y~ar~lVlg  152 (436)
T COG3486          82 GRLYEFLNYETFHIPRREYNDYCQWAASQL---PSLRFGEEVTDISSLDGDAVVRLFVV-TANG----TV-YRARNLVLG  152 (436)
T ss_pred             chHhhhhhhhcccccHHHHHHHHHHHHhhC---CccccCCeeccccccCCcceeEEEEE-cCCC----cE-EEeeeEEEc
Confidence                   00125689999999999999998   34499999996633222233331111 1111    46 999999999


Q ss_pred             ccCCCCCCCCC-CCCccccccCCCCCccEEecCCCCC-CCCCCCCe-EEEECcCCCHHHHHHHHhhc----cCeEEEEEe
Q 020533          145 SGETTNPFTPD-IRGLCSFCSSATGTGEVIHSTQYKN-GKPYGGKN-VLVVGSGNSGMEIALDLANH----AAKTSLVVR  217 (325)
Q Consensus       145 tG~~~~p~~p~-~~g~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~-v~VvG~G~s~~e~a~~l~~~----~~~v~~~~r  217 (325)
                      +|  .+|.+|+ +..+.        ..+++|++++.+ ..+...|+ |+|||+|.||+|+..+|...    ..++.|+.|
T Consensus       153 ~G--~~P~IP~~f~~l~--------~~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR  222 (436)
T COG3486         153 VG--TQPYIPPCFRSLI--------GERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITR  222 (436)
T ss_pred             cC--CCcCCChHHhCcC--------ccceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeec
Confidence            99  8899985 33332        348999999875 34455555 99999999999999998765    235889999


Q ss_pred             cCCeeechhhHHHH
Q 020533          218 SPVHVLSREMVYLG  231 (325)
Q Consensus       218 ~~~~~~p~~~~~~~  231 (325)
                      +. -++|.+...++
T Consensus       223 ~~-gf~p~d~Skf~  235 (436)
T COG3486         223 SS-GFLPMDYSKFG  235 (436)
T ss_pred             cC-CCCccccchhh
Confidence            99 67787665443

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=99.72  E-value=5.7e-17  Score=140.99  Aligned_cols=215  Identities=13%  Similarity=0.121  Sum_probs=136.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC-CCCCceEeecCCCccCCCCCC-CC----CCCCCCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQFCQLPHLP-FP----SSYPMFVS   79 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~-~~y~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~   79 (325)
                      ..+||+|||+||+|..||...++.|++.+++|++..+||++.. .+.|+-.+-..+.+|+.-... +.    +-++.-..
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~d  117 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLD  117 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecC
Confidence            4699999999999999999999999999999999999998753 444443333333332221110 00    00011223


Q ss_pred             HHHHHHHHHHHHHHcC--CCceeeeC-eEEEEEE---EcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533           80 RAQFIEHLDHYVSHFN--IGPSIRYQ-RSVESAS---YDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (325)
Q Consensus        80 ~~~~~~yl~~~a~~~~--l~~~i~~~-~~V~~i~---~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~  153 (325)
                      .+.+.+.....++++.  +..  .|. .+|+-+.   ...+.+..++.-.++     +... +.++.+|+|||  |  .+
T Consensus       118 l~~~~~~k~~~vk~Lt~gi~~--lfkknkV~~~kG~gsf~~p~~V~v~k~dg-----~~~i-i~aKnIiiATG--S--eV  185 (506)
T KOG1335|consen  118 LQAMMKAKDNAVKQLTGGIEN--LFKKNKVTYVKGFGSFLDPNKVSVKKIDG-----EDQI-IKAKNIIIATG--S--EV  185 (506)
T ss_pred             HHHHHHHHHHHHHHHhhHHHH--HhhhcCeEEEeeeEeecCCceEEEeccCC-----CceE-EeeeeEEEEeC--C--cc
Confidence            3344444444433321  111  111 1222211   111123333333333     3367 99999999999  3  24


Q ss_pred             CCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHHHHHH
Q 020533          154 PDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVV  233 (325)
Q Consensus       154 p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~~~~~  233 (325)
                      +++||++-       ....+-|++-.-....-+++++|||+|.+|.|+..-..++|++||++.-.+ .+.|..+.+++..
T Consensus       186 ~~~PGI~I-------DekkIVSStgALsL~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~-~i~~~mD~Eisk~  257 (506)
T KOG1335|consen  186 TPFPGITI-------DEKKIVSSTGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLD-QIGGVMDGEISKA  257 (506)
T ss_pred             CCCCCeEe-------cCceEEecCCccchhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehh-hhccccCHHHHHH
Confidence            46778764       344455555544466678999999999999999999999999999999998 6888888888776


Q ss_pred             HHhhCCH
Q 020533          234 LFKYVPF  240 (325)
Q Consensus       234 ~~~~~p~  240 (325)
                      +.+.+..
T Consensus       258 ~qr~L~k  264 (506)
T KOG1335|consen  258 FQRVLQK  264 (506)
T ss_pred             HHHHHHh
Confidence            6665544

>TIGR03452 mycothione_red mycothione reductase

Probab=99.72  E-value=7.8e-17  Score=151.03  Aligned_cols=192  Identities=14%  Similarity=0.177  Sum_probs=110.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC-CCCCceEeecCCCcc----CCCCCCCCCCCCCCCCHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQFC----QLPHLPFPSSYPMFVSRA   81 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~-~~y~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~   81 (325)
                      +||++|||+|++|..+|..  ..|.+|+++|++ .+||++-+ .+.|+..+.......    ....+..... ..-....
T Consensus         2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~-~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~-~~~~d~~   77 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKG-TFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAE-IDSVRWP   77 (452)
T ss_pred             CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCC-CCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCC-CCccCHH
Confidence            5899999999999998654  469999999985 58887743 344433221111100    0000111000 0112445


Q ss_pred             HHHHHHHH-HHHHc-C--C---------CceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCC
Q 020533           82 QFIEHLDH-YVSHF-N--I---------GPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET  148 (325)
Q Consensus        82 ~~~~yl~~-~a~~~-~--l---------~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~  148 (325)
                      ++.++..+ ..+.. .  .         ...+..++.+    ..   +.++|++.++       .+ ++||+||+|||  
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~----~~---~~~~V~~~~g-------~~-~~~d~lIiATG--  140 (452)
T TIGR03452        78 DIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHAR----FV---GPRTLRTGDG-------EE-ITGDQIVIAAG--  140 (452)
T ss_pred             HHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEE----Ee---cCCEEEECCC-------cE-EEeCEEEEEEC--
Confidence            55555433 22211 0  0         0111222111    11   2355666442       46 89999999999  


Q ss_pred             CCCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhH
Q 020533          149 TNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV  228 (325)
Q Consensus       149 ~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~  228 (325)
                      +.|..|+..+...        -.+..+.+... ....+++++|||+|.+|+|+|..+++.|.+|+++.+.+ .++|..+.
T Consensus       141 s~p~~p~~~~~~~--------~~~~~~~~~~~-l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~-~ll~~~d~  210 (452)
T TIGR03452       141 SRPYIPPAIADSG--------VRYHTNEDIMR-LPELPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRST-KLLRHLDE  210 (452)
T ss_pred             CCCCCCCCCCCCC--------CEEEcHHHHHh-hhhcCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC-ccccccCH
Confidence            7787776433211        11222222221 11236899999999999999999999999999999988 35554443


Q ss_pred             H
Q 020533          229 Y  229 (325)
Q Consensus       229 ~  229 (325)
                      +
T Consensus       211 ~  211 (452)
T TIGR03452       211 D  211 (452)
T ss_pred             H
Confidence            3

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=99.72  E-value=5.6e-17  Score=161.35  Aligned_cols=169  Identities=22%  Similarity=0.292  Sum_probs=110.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      .++|+||||||+||+||..|+++|++|+|||+.+.+||..+..               ++.+         ....++.++
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~---------------IP~~---------rlp~e~l~~  592 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNI---------------IPEF---------RISAESIQK  592 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeec---------------cccc---------CCCHHHHHH
Confidence            5799999999999999999999999999999999999875321               1111         111244444


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA  166 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~~  166 (325)
                      ..+.+..+++..  ++++..          .  +.....       .. ..+|+||+|||.. .+..+.++|....    
T Consensus       593 ~ie~l~~~GVe~--~~g~~~----------d--~~ve~l-------~~-~gYDaVIIATGA~-~~~~l~I~G~~~~----  645 (1012)
T TIGR03315       593 DIELVKFHGVEF--KYGCSP----------D--LTVAEL-------KN-QGYKYVILAIGAW-KHGPLRLEGGGER----  645 (1012)
T ss_pred             HHHHHHhcCcEE--EEeccc----------c--eEhhhh-------hc-ccccEEEECCCCC-CCCCCCcCCCCcc----
Confidence            455556666543  554310          0  111111       34 5689999999963 2334456664321    


Q ss_pred             CCCccEEecCCC----CC--CCCCCCCeEEEECcCCCHHHHHHHHhhc-cC-eEEEEEecCCeeechhhHHHH
Q 020533          167 TGTGEVIHSTQY----KN--GKPYGGKNVLVVGSGNSGMEIALDLANH-AA-KTSLVVRSPVHVLSREMVYLG  231 (325)
Q Consensus       167 ~~~g~~~~~~~~----~~--~~~~~~~~v~VvG~G~s~~e~a~~l~~~-~~-~v~~~~r~~~~~~p~~~~~~~  231 (325)
                           ++.+.++    ..  .....+++|+|||+|++|+|+|..+.+. |. +|++++|+....+|....++.
T Consensus       646 -----v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa~~eEl~  713 (1012)
T TIGR03315       646 -----VLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASREELE  713 (1012)
T ss_pred             -----eeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCccccccCHHHHH
Confidence                 2221111    11  1224589999999999999999998886 64 799999988666676554443

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.72  E-value=1.1e-16  Score=156.36  Aligned_cols=170  Identities=16%  Similarity=0.201  Sum_probs=114.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      ..++|+||||||+||++|..|++.|++|+|||+.+.+||.+...               ++.         +....++.+
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~g---------------ip~---------~~l~~~~~~  381 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFG---------------IPA---------FKLDKSLLA  381 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeec---------------CCC---------ccCCHHHHH
Confidence            45799999999999999999999999999999999999876532               111         111234555


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~  165 (325)
                      ...+.++++|+..  ++++.|..          .+....        .. ..||.|++|||.+ .+..+.+||.+.    
T Consensus       382 ~~~~~~~~~Gv~~--~~~~~v~~----------~i~~~~--------~~-~~~DavilAtGa~-~~~~l~i~g~~~----  435 (654)
T PRK12769        382 RRREIFSAMGIEF--ELNCEVGK----------DISLES--------LL-EDYDAVFVGVGTY-RSMKAGLPNEDA----  435 (654)
T ss_pred             HHHHHHHHCCeEE--ECCCEeCC----------cCCHHH--------HH-hcCCEEEEeCCCC-CCCCCCCCCCCC----
Confidence            5566677777544  77776521          011111        22 4689999999963 333456666543    


Q ss_pred             CCCCccEE-------------ecCCCCC--CCCCCCCeEEEECcCCCHHHHHHHHhhccC-eEEEEEecCCeeechhhH
Q 020533          166 ATGTGEVI-------------HSTQYKN--GKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSPVHVLSREMV  228 (325)
Q Consensus       166 ~~~~g~~~-------------~~~~~~~--~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~-~v~~~~r~~~~~~p~~~~  228 (325)
                         .|...             ......+  .....+++|+|||+|++|+|+|..+.+.|. +|++++|++...+|....
T Consensus       436 ---~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~  511 (654)
T PRK12769        436 ---PGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKK  511 (654)
T ss_pred             ---CCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCHH
Confidence               22110             0000101  123568999999999999999999999986 699999987655665444

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=99.71  E-value=7.2e-16  Score=156.51  Aligned_cols=176  Identities=14%  Similarity=0.129  Sum_probs=112.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      .+||+||||||+||++|..|++.|.+|+|+|+.+.+||.+....   .         ..         +. .+..++.+.
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~---~---------~~---------~g-~~~~~~~~~  220 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEA---E---------TI---------DG-KPAADWAAA  220 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccc---c---------cc---------CC-ccHHHHHHH
Confidence            47999999999999999999999999999999999998765321   0         00         00 122233333


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEe--------ecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKAS--------NLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRG  158 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~--------~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g  158 (325)
                      +.+.+..++ ...++.+++|.++....  ....+...        .....+ .... +.++.||+|||  +.++.|++||
T Consensus       221 ~~~~l~~~~-~v~v~~~t~V~~i~~~~--~v~~v~~~~~~~~~~~~~~~~~-~~~~-i~a~~VILATG--a~~r~~pipG  293 (985)
T TIGR01372       221 TVAELTAMP-EVTLLPRTTAFGYYDHN--TVGALERVTDHLDAPPKGVPRE-RLWR-IRAKRVVLATG--AHERPLVFAN  293 (985)
T ss_pred             HHHHHhcCC-CcEEEcCCEEEEEecCC--eEEEEEEeeeccccccCCcccc-ceEE-EEcCEEEEcCC--CCCcCCCCCC
Confidence            333333342 13447888888774321  11111100        000000 1136 89999999999  6677788888


Q ss_pred             ccccccCCCCCccEEecC---CCCC-CCCCCCCeEEEECcCCCHHHHHHHHhhccC-eEEEEEecC
Q 020533          159 LCSFCSSATGTGEVIHST---QYKN-GKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSP  219 (325)
Q Consensus       159 ~~~~~~~~~~~g~~~~~~---~~~~-~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~-~v~~~~r~~  219 (325)
                      .+.       .| ++...   .+.. .....+++|+|||+|.+|+|+|..|++.|. .|+++.+++
T Consensus       294 ~~~-------pg-V~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~  351 (985)
T TIGR01372       294 NDR-------PG-VMLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARA  351 (985)
T ss_pred             CCC-------CC-cEEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCc
Confidence            653       23 22211   1111 123468999999999999999999999995 577777665

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=99.70  E-value=4e-16  Score=146.58  Aligned_cols=169  Identities=17%  Similarity=0.235  Sum_probs=116.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      ..++|+|||+|++|+++|..|+++|++|+|+|+.+.+||.++..               ++.         +....++.+
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~g---------------ip~---------~~~~~~~~~  195 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFG---------------IPS---------FKLDKAVLS  195 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeec---------------Ccc---------ccCCHHHHH
Confidence            45799999999999999999999999999999999999876531               111         111235666


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~  165 (325)
                      +..+.++++|+..  ++++++..          .+..++        .. ..+|.||+|||... +..+++||.+.    
T Consensus       196 ~~~~~~~~~Gv~~--~~~~~v~~----------~~~~~~--------~~-~~~D~vilAtGa~~-~~~~~i~g~~~----  249 (467)
T TIGR01318       196 RRREIFTAMGIEF--HLNCEVGR----------DISLDD--------LL-EDYDAVFLGVGTYR-SMRGGLPGEDA----  249 (467)
T ss_pred             HHHHHHHHCCCEE--ECCCEeCC----------ccCHHH--------HH-hcCCEEEEEeCCCC-CCcCCCCCcCC----
Confidence            7777788888654  78877621          011111        23 46899999999532 22345777543    


Q ss_pred             CCCCccEEecC--------------CCC--CCCCCCCCeEEEECcCCCHHHHHHHHhhccC-eEEEEEecCCeeechhhH
Q 020533          166 ATGTGEVIHST--------------QYK--NGKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSPVHVLSREMV  228 (325)
Q Consensus       166 ~~~~g~~~~~~--------------~~~--~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~-~v~~~~r~~~~~~p~~~~  228 (325)
                         .| +++..              ...  ......+++++|||+|++|+|+|..+.+.|. +||+++|++...+|....
T Consensus       250 ---~g-V~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~~  325 (467)
T TIGR01318       250 ---PG-VLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPGSRR  325 (467)
T ss_pred             ---CC-cEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCCCHH
Confidence               12 11110              000  0122468999999999999999999999985 799999988666665544

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=99.69  E-value=1.2e-16  Score=150.66  Aligned_cols=159  Identities=21%  Similarity=0.250  Sum_probs=107.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      ..++|+|||||++|+++|..|++.|++|+|||+.+.+||.++..               ++         .+....++.+
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g---------------ip---------~~~~~~~~~~  197 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYG---------------IP---------DFKLEKEVID  197 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeec---------------CC---------cccCCHHHHH
Confidence            35799999999999999999999999999999999999875431               11         1112234555


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~  165 (325)
                      ...+.+.++++..  ++++.+.. +         +....        .. ..+|.||+|||.. .+..+.+||.+.    
T Consensus       198 ~~~~~~~~~gv~~--~~~~~v~~-~---------~~~~~--------~~-~~~d~vvlAtGa~-~~~~l~ipG~~~----  251 (471)
T PRK12810        198 RRIELMEAEGIEF--RTNVEVGK-D---------ITAEE--------LL-AEYDAVFLGTGAY-KPRDLGIPGRDL----  251 (471)
T ss_pred             HHHHHHHhCCcEE--EeCCEECC-c---------CCHHH--------HH-hhCCEEEEecCCC-CCCcCCCCCccC----
Confidence            5556677777554  77776521 0         11111        23 5789999999952 356667888643    


Q ss_pred             CCCCccEEecC-------------CCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccC-eEEEEEec
Q 020533          166 ATGTGEVIHST-------------QYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRS  218 (325)
Q Consensus       166 ~~~~g~~~~~~-------------~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~-~v~~~~r~  218 (325)
                         .| +....             .........+++|+|||+|++|+|+|..+.+.|. +|+...+.
T Consensus       252 ---~g-V~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~  314 (471)
T PRK12810        252 ---DG-VHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIM  314 (471)
T ss_pred             ---CC-cEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEcccc
Confidence               22 22211             0111124568999999999999999999888875 68854443

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=3.1e-15  Score=128.30  Aligned_cols=209  Identities=19%  Similarity=0.252  Sum_probs=136.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEec--CCCCCCccCCCCCCceEee---cCCCccC-----------CCCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILER--ENCYASIWKKYSYDRLRLH---LAKQFCQ-----------LPHLP   69 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~--~~~~Gg~w~~~~y~~~~~~---~~~~~~~-----------~~~~~   69 (325)
                      ..||++|||||.+||++|+..+..|.+|.++|-  -.-.|..|.-.   +...|   +|+.+++           -..+.
T Consensus        18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlG---GTCvNVGCIPKKLMHQAallG~al~da~kyG   94 (503)
T KOG4716|consen   18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLG---GTCVNVGCIPKKLMHQAALLGEALHDARKYG   94 (503)
T ss_pred             CCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccC---ceeeecccccHHHHHHHHHHHHHHHHHHhhC
Confidence            468999999999999999999999999999982  22245555532   11222   1222111           01111


Q ss_pred             CCCCC-CCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCc----EEEEEeecCCCCceeEEEEEeCeEEEc
Q 020533           70 FPSSY-PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNM----WNVKASNLLSPGREIEEYYSGRFLVVA  144 (325)
Q Consensus        70 ~~~~~-~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~----~~v~~~~~~~~~~~~~~~~~ad~vIiA  144 (325)
                      |.-+- ..-+.+..+.+-.++.....+.--++.++.  ..+.+...-+.    .++...+..+   +.+. ++|+.+++|
T Consensus        95 W~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~Lre--KkV~Y~NsygeFv~~h~I~at~~~g---k~~~-~ta~~fvIa  168 (503)
T KOG4716|consen   95 WNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLRE--KKVEYINSYGEFVDPHKIKATNKKG---KERF-LTAENFVIA  168 (503)
T ss_pred             CCCccccccccHHHHHHHHHHHhhhccceEEEEecc--ceeeeeecceeecccceEEEecCCC---ceEE-eecceEEEE
Confidence            11111 234566778888888777766544333332  23333322222    3344443322   2366 999999999


Q ss_pred             ccCCCCCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeec
Q 020533          145 SGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLS  224 (325)
Q Consensus       145 tG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p  224 (325)
                      ||  .+|+.|++||..++         .+.|.+... ..+.+.+.+|||+|+.|.|+|..|+..|..||+..|+-  +|.
T Consensus       169 tG--~RPrYp~IpG~~Ey---------~ITSDDlFs-l~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI--~Lr  234 (503)
T KOG4716|consen  169 TG--LRPRYPDIPGAKEY---------GITSDDLFS-LPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSI--LLR  234 (503)
T ss_pred             ec--CCCCCCCCCCceee---------eeccccccc-ccCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEEe--ecc
Confidence            99  88999999998765         355655554 44556678899999999999999999999999999984  666


Q ss_pred             hhhHHHHHHHHhh
Q 020533          225 REMVYLGVVLFKY  237 (325)
Q Consensus       225 ~~~~~~~~~~~~~  237 (325)
                      -++.+++..+...
T Consensus       235 GFDqdmae~v~~~  247 (503)
T KOG4716|consen  235 GFDQDMAELVAEH  247 (503)
T ss_pred             cccHHHHHHHHHH
Confidence            6666555544443

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.67  E-value=8.7e-16  Score=149.59  Aligned_cols=169  Identities=15%  Similarity=0.192  Sum_probs=116.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      ..++|+|||+|++||++|..|++.|++|+|||+.+.+||.|++.               .+.+.         ...++.+
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~g---------------ip~~~---------l~~~~~~  364 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFG---------------IPPFK---------LDKTVLS  364 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeecc---------------CCccc---------CCHHHHH
Confidence            46899999999999999999999999999999999999987643               11111         1134555


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~  165 (325)
                      ...+.++.+|+..  ++++++..          .+...+        .. ..+|.|++|||.. .+..+.+||.+.    
T Consensus       365 ~~~~~~~~~Gv~~--~~~~~v~~----------~~~~~~--------l~-~~~DaV~latGa~-~~~~~~i~g~~~----  418 (639)
T PRK12809        365 QRREIFTAMGIDF--HLNCEIGR----------DITFSD--------LT-SEYDAVFIGVGTY-GMMRADLPHEDA----  418 (639)
T ss_pred             HHHHHHHHCCeEE--EcCCccCC----------cCCHHH--------HH-hcCCEEEEeCCCC-CCCCCCCCCCcc----
Confidence            5666777788654  77776521          011221        23 4689999999964 334456777543    


Q ss_pred             CCCCccEEec-----------CCCCC-----CCCCCCCeEEEECcCCCHHHHHHHHhhccC-eEEEEEecCCeeechhhH
Q 020533          166 ATGTGEVIHS-----------TQYKN-----GKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSPVHVLSREMV  228 (325)
Q Consensus       166 ~~~~g~~~~~-----------~~~~~-----~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~-~v~~~~r~~~~~~p~~~~  228 (325)
                         .|. ++.           .....     .....+|+|+|||+|.+|+|+|..+.+.|. +||+++|++...+|....
T Consensus       419 ---~gv-~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~~~  494 (639)
T PRK12809        419 ---PGV-IQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRK  494 (639)
T ss_pred             ---CCc-EeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHH
Confidence               221 110           00000     123468999999999999999999888885 799999987555665543

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=99.66  E-value=2.3e-15  Score=135.22  Aligned_cols=170  Identities=24%  Similarity=0.314  Sum_probs=119.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC--CeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI--PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI   84 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~--~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (325)
                      ...++|||+|++|..|+..+++.|+  +++++-+...+-       |+..++  ++.....              ...+.
T Consensus        74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~p-------ydr~~L--s~~~~~~--------------~~~~a  130 (478)
T KOG1336|consen   74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLP-------YDRARL--SKFLLTV--------------GEGLA  130 (478)
T ss_pred             cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCc-------ccchhc--ccceeec--------------ccccc
Confidence            4579999999999999999999987  778877665421       222111  1111000              01111


Q ss_pred             HHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCcccccc
Q 020533           85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS  164 (325)
Q Consensus        85 ~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~  164 (325)
                      ....++.+.++++.  ++++.|+.++...    -+|.+.++       +. +.++++++|||  +.++.|++||.+..  
T Consensus       131 ~r~~e~Yke~gIe~--~~~t~v~~~D~~~----K~l~~~~G-------e~-~kys~LilATG--s~~~~l~~pG~~~~--  192 (478)
T KOG1336|consen  131 KRTPEFYKEKGIEL--ILGTSVVKADLAS----KTLVLGNG-------ET-LKYSKLIIATG--SSAKTLDIPGVELK--  192 (478)
T ss_pred             ccChhhHhhcCceE--EEcceeEEeeccc----cEEEeCCC-------ce-eecceEEEeec--CccccCCCCCcccc--
Confidence            22233456677766  9999999998765    45777765       67 89999999999  68889999998632  


Q ss_pred             CCCCCccEEecC-CCCCC-----CCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeech
Q 020533          165 SATGTGEVIHST-QYKNG-----KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSR  225 (325)
Q Consensus       165 ~~~~~g~~~~~~-~~~~~-----~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~  225 (325)
                             .+++. +..+.     ..-.+++|+|+|+|..|+|++..|...+.+||++.+.+ |.+|+
T Consensus       193 -------nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~-~~~~~  251 (478)
T KOG1336|consen  193 -------NVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEP-WLLPR  251 (478)
T ss_pred             -------ceeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHHHHhcCceEEEEccCc-cchhh
Confidence                   22221 11111     11237889999999999999999999999999999999 77776

>PRK09897 hypothetical protein; Provisional

Probab=99.66  E-value=3.6e-15  Score=140.75  Aligned_cols=190  Identities=15%  Similarity=0.197  Sum_probs=118.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhcC--CCeEEEecCCCCC-Cc-cCCCCC-CceEeecCC--------CccCCCCC------
Q 020533            8 VEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYA-SI-WKKYSY-DRLRLHLAK--------QFCQLPHL------   68 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g--~~v~v~e~~~~~G-g~-w~~~~y-~~~~~~~~~--------~~~~~~~~------   68 (325)
                      ++|+|||||++|+++|.+|.+.+  ++|+|||++..+| |. |....- +-+..+...        .+..+...      
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~   81 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL   81 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence            58999999999999999998764  5899999988887 43 443211 111112110        11111000      


Q ss_pred             ---C---CCCCCCCCCCHHHHHHHHHHHHHHc-------CCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEE
Q 020533           69 ---P---FPSSYPMFVSRAQFIEHLDHYVSHF-------NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY  135 (325)
Q Consensus        69 ---~---~~~~~~~~~~~~~~~~yl~~~a~~~-------~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~  135 (325)
                         .   ...+...|+++..+.+|+.+..+.+       +....++.+++|++++..+  +.|.|++.++.      .. 
T Consensus        82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~--~g~~V~t~~gg------~~-  152 (534)
T PRK09897         82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITN--AGVMLATNQDL------PS-  152 (534)
T ss_pred             HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeC--CEEEEEECCCC------eE-
Confidence               0   0001135778877777777654432       3334557788999998765  66888775431      46 


Q ss_pred             EEeCeEEEcccCCCCCCCCCCCCccccccCCCCCccEEecCCCCC--CCCCCCCeEEEECcCCCHHHHHHHHhhcc----
Q 020533          136 YSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKN--GKPYGGKNVLVVGSGNSGMEIALDLANHA----  209 (325)
Q Consensus       136 ~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~v~VvG~G~s~~e~a~~l~~~~----  209 (325)
                      +.+|.||+|+|+.. |..+  ++...|          + ...|..  .....+.+|+|+|.|.|++|++..|...+    
T Consensus       153 i~aD~VVLAtGh~~-p~~~--~~~~~y----------i-~~pw~~~~~~~i~~~~V~I~GtGLt~iD~v~~Lt~~gG~F~  218 (534)
T PRK09897        153 ETFDLAVIATGHVW-PDEE--EATRTY----------F-PSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFI  218 (534)
T ss_pred             EEcCEEEECCCCCC-CCCC--hhhccc----------c-CCCCcchhhcCCCCCeEEEECCCHHHHHHHHHHHhcCCcee
Confidence            88999999999632 2211  111111          1 122221  12334689999999999999999987552    


Q ss_pred             -----------------CeEEEEEecCC
Q 020533          210 -----------------AKTSLVVRSPV  220 (325)
Q Consensus       210 -----------------~~v~~~~r~~~  220 (325)
                                       .+++++.|++.
T Consensus       219 ~~~~~~~~l~y~~sg~~~~I~a~SRrGl  246 (534)
T PRK09897        219 EDDKQHVVFHRDNASEKLNITLMSRTGI  246 (534)
T ss_pred             ccCCCcceeeecCCCCCceEEEEeCCCC
Confidence                             36899999873

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=99.64  E-value=3.6e-15  Score=140.70  Aligned_cols=162  Identities=22%  Similarity=0.249  Sum_probs=109.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      ..++|+|||||++|+++|..|++.|++|+|||+.+.+||...+.               ++         .+....++..
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~g---------------ip---------~~~~~~~~~~  197 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYG---------------IP---------NMKLDKAIVD  197 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeecc---------------CC---------CccCCHHHHH
Confidence            34799999999999999999999999999999999988764321               11         1111234555


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~  165 (325)
                      +..+.++++++..  ++++.+. .+         +..+.        .. ..||.||+|||.. .|..+++||.+.    
T Consensus       198 ~~~~~~~~~Gv~~--~~~~~v~-~~---------~~~~~--------~~-~~~d~VilAtGa~-~~~~l~i~G~~~----  251 (485)
T TIGR01317       198 RRIDLLSAEGIDF--VTNTEIG-VD---------ISADE--------LK-EQFDAVVLAGGAT-KPRDLPIPGREL----  251 (485)
T ss_pred             HHHHHHHhCCCEE--ECCCEeC-Cc---------cCHHH--------HH-hhCCEEEEccCCC-CCCcCCCCCcCC----
Confidence            5556667777654  7777763 10         11111        23 5789999999953 367778888642    


Q ss_pred             CCCCccEE-----ecC-------CC--CCCCCCCCCeEEEECcCCCHHHHHHHHhhcc-CeEEEEEecCC
Q 020533          166 ATGTGEVI-----HST-------QY--KNGKPYGGKNVLVVGSGNSGMEIALDLANHA-AKTSLVVRSPV  220 (325)
Q Consensus       166 ~~~~g~~~-----~~~-------~~--~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~-~~v~~~~r~~~  220 (325)
                         .|...     +..       ..  .......+|+|+|||+|++|+|+|..+.+.+ .+|+++.+.+.
T Consensus       252 ---~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~  318 (485)
T TIGR01317       252 ---KGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPK  318 (485)
T ss_pred             ---CCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence               22111     000       00  0112256899999999999999988888876 47999988773

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK13984 putative oxidoreductase; Provisional

Probab=99.62  E-value=5.6e-15  Score=143.52  Aligned_cols=157  Identities=18%  Similarity=0.242  Sum_probs=105.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      ..++|+|||+|++|+++|..|.++|++|+|||+.+..||.+...               ++.         +....++..
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~---------------i~~---------~~~~~~~~~  337 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYG---------------IPS---------YRLPDEALD  337 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeec---------------CCc---------ccCCHHHHH
Confidence            46789999999999999999999999999999999988865421               111         111234445


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~  165 (325)
                      ...+.++++++..  +++++|..   +       +..+.        .. ..||+||+|||. ..|+.+++||.+..   
T Consensus       338 ~~~~~~~~~gv~~--~~~~~v~~---~-------~~~~~--------~~-~~yD~vilAtGa-~~~r~l~i~G~~~~---  392 (604)
T PRK13984        338 KDIAFIEALGVKI--HLNTRVGK---D-------IPLEE--------LR-EKHDAVFLSTGF-TLGRSTRIPGTDHP---  392 (604)
T ss_pred             HHHHHHHHCCcEE--ECCCEeCC---c-------CCHHH--------HH-hcCCEEEEEcCc-CCCccCCCCCcCCc---
Confidence            5555667777554  77777621   0       11111        23 578999999995 23566778886531   


Q ss_pred             CCCCccEEecCCCCC----------CCCCCCCeEEEECcCCCHHHHHHHHhhccC------eEEEEE
Q 020533          166 ATGTGEVIHSTQYKN----------GKPYGGKNVLVVGSGNSGMEIALDLANHAA------KTSLVV  216 (325)
Q Consensus       166 ~~~~g~~~~~~~~~~----------~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~------~v~~~~  216 (325)
                          + +++..++..          .....+++|+|||+|.+|+|+|..+++.+.      +|+++.
T Consensus       393 ----g-v~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~  454 (604)
T PRK13984        393 ----D-VIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS  454 (604)
T ss_pred             ----C-eEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence                2 222211110          012347899999999999999999998753      677764

>PTZ00188 adrenodoxin reductase; Provisional

Probab=99.58  E-value=3.8e-14  Score=130.57  Aligned_cols=44  Identities=20%  Similarity=0.167  Sum_probs=38.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHH-hcCCCeEEEecCCCCCCccCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLS-LQSIPYVILERENCYASIWKKY   49 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~-~~g~~v~v~e~~~~~Gg~w~~~   49 (325)
                      ..++|+||||||+|+++|..|+ +.|++|+|||+.+.+||.+++.
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~G   82 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYG   82 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEe
Confidence            4578999999999999999875 5699999999999999988753

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=99.58  E-value=1.5e-14  Score=141.90  Aligned_cols=39  Identities=10%  Similarity=0.171  Sum_probs=35.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg   44 (325)
                      ..++|+||||||+||++|+.|++.|++|++||+.+..|+
T Consensus       382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl  420 (1028)
T PRK06567        382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLL  420 (1028)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccccccc
Confidence            567999999999999999999999999999999876554

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=99.58  E-value=1.8e-14  Score=138.74  Aligned_cols=167  Identities=20%  Similarity=0.272  Sum_probs=111.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      ...+|+|||+||+||++|..|+++|++|+++|+.+.+||.++..               ++.+.         ...++.+
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~g---------------ip~~~---------~~~~~~~  191 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYG---------------IPAYR---------LPREVLD  191 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec---------------CCCcc---------CCHHHHH
Confidence            45789999999999999999999999999999999999876431               11111         1234445


Q ss_pred             HHHHHHHHcCCCceeeeCeEE-EEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCcccccc
Q 020533           86 HLDHYVSHFNIGPSIRYQRSV-ESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS  164 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V-~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~  164 (325)
                      ...+.+.++++..  .+++.+ ..+..+           .        .. ..+|.||+|+|... +..+.++|.+.   
T Consensus       192 ~~l~~~~~~Gv~~--~~~~~~~~~~~~~-----------~--------~~-~~~D~Vi~AtG~~~-~~~~~i~g~~~---  245 (564)
T PRK12771        192 AEIQRILDLGVEV--RLGVRVGEDITLE-----------Q--------LE-GEFDAVFVAIGAQL-GKRLPIPGEDA---  245 (564)
T ss_pred             HHHHHHHHCCCEE--EeCCEECCcCCHH-----------H--------HH-hhCCEEEEeeCCCC-CCcCCCCCCcc---
Confidence            5555667777543  676654 221111           1        12 35799999999632 23345666432   


Q ss_pred             CCCCCccEEecCCC-----CCCCCCCCCeEEEECcCCCHHHHHHHHhhcc-CeEEEEEecCCeeechhh
Q 020533          165 SATGTGEVIHSTQY-----KNGKPYGGKNVLVVGSGNSGMEIALDLANHA-AKTSLVVRSPVHVLSREM  227 (325)
Q Consensus       165 ~~~~~g~~~~~~~~-----~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~-~~v~~~~r~~~~~~p~~~  227 (325)
                          .|.+ +...+     .......+++|+|||+|.+|+|++..+.+.+ .+|++++|.+...+|...
T Consensus       246 ----~gv~-~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~~~  309 (564)
T PRK12771        246 ----AGVL-DAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPAHD  309 (564)
T ss_pred             ----CCcE-EHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCCCH
Confidence                2322 21111     1113456899999999999999999998888 679999998754455443

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.57  E-value=2.1e-13  Score=123.43  Aligned_cols=199  Identities=19%  Similarity=0.226  Sum_probs=128.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhcC---CCeEEEecCCCCCC-ccCCCCCCceEeecCCCccCC--CCCC------------
Q 020533            8 VEVIMVGAGTSGLATAACLSLQS---IPYVILERENCYAS-IWKKYSYDRLRLHLAKQFCQL--PHLP------------   69 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g---~~v~v~e~~~~~Gg-~w~~~~y~~~~~~~~~~~~~~--~~~~------------   69 (325)
                      ++|+|||+|++|+++|.+|.+.-   ..+.|||+.+.+|+ +-+...-+..++|++..-++.  ++.|            
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~   81 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ   81 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence            68999999999999999999862   24999999998875 333333333444544332221  2211            


Q ss_pred             -------CCCCCCCCCCHHHHHHHHHHHHHHcCCCc----eeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEe
Q 020533           70 -------FPSSYPMFVSRAQFIEHLDHYVSHFNIGP----SIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSG  138 (325)
Q Consensus        70 -------~~~~~~~~~~~~~~~~yl~~~a~~~~l~~----~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~a  138 (325)
                             ...+-+.|+++..+.+|+.+....+--..    .....++.+++...++.+.|.+...++       .. ..|
T Consensus        82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g-------~~-~~a  153 (474)
T COG4529          82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADG-------PS-EIA  153 (474)
T ss_pred             ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCC-------Ce-eee
Confidence                   12234578899999999888765441111    124556777777765557788887775       45 689


Q ss_pred             CeEEEcccCCCCCCCCCCCCccccccCCCCCc-cEEecCCCCCC---CCCCCCeEEEECcCCCHHHHHHHHhhccC--eE
Q 020533          139 RFLVVASGETTNPFTPDIRGLCSFCSSATGTG-EVIHSTQYKNG---KPYGGKNVLVVGSGNSGMEIALDLANHAA--KT  212 (325)
Q Consensus       139 d~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~g-~~~~~~~~~~~---~~~~~~~v~VvG~G~s~~e~a~~l~~~~~--~v  212 (325)
                      |.+|+|||+. .|..+.  -...+      .+ .-+++..|...   ....+.+|+|+|+|.+.+|....|...|.  ++
T Consensus       154 d~~Vlatgh~-~~~~~~--~~~~~------~~~~~~ia~~~~~~~ld~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~I  224 (474)
T COG4529         154 DIIVLATGHS-APPADP--AARDL------KGSPRLIADPYPANALDGVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPI  224 (474)
T ss_pred             eEEEEeccCC-CCCcch--hhhcc------CCCcceeccccCCcccccccCCCceEEecCCchhHHHHHHHhccCCccce
Confidence            9999999963 332222  11222      11 11333333321   22345679999999999999999999874  69


Q ss_pred             EEEEecCCeeech
Q 020533          213 SLVVRSPVHVLSR  225 (325)
Q Consensus       213 ~~~~r~~~~~~p~  225 (325)
                      |++.|++  ++|+
T Consensus       225 t~iSRrG--l~~~  235 (474)
T COG4529         225 TAISRRG--LVPR  235 (474)
T ss_pred             EEEeccc--cccC
Confidence            9999998  4444

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=99.57  E-value=5.7e-14  Score=131.13  Aligned_cols=158  Identities=18%  Similarity=0.307  Sum_probs=100.5

Q ss_pred             HHHHHHHhc--CCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCC-CCCHHHHHHH-HHHHHHHcCC
Q 020533           21 ATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPM-FVSRAQFIEH-LDHYVSHFNI   96 (325)
Q Consensus        21 ~~a~~L~~~--g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~y-l~~~a~~~~l   96 (325)
                      ++|.+|++.  ..+|+|||+++..+       |..  +       .+     +..... .....++..| ..++++++++
T Consensus         1 saA~~l~~~~~~~~Vtlid~~~~~~-------~~~--~-------~l-----~~~~~g~~~~~~~~~~~~~~~~~~~~gv   59 (427)
T TIGR03385         1 SAASRVRRLDKESDIIVFEKTEDVS-------FAN--C-------GL-----PYVIGGVIDDRNKLLAYTPEVFIKKRGI   59 (427)
T ss_pred             CHHHHHHhhCCCCcEEEEEcCCcee-------EEc--C-------CC-----CeEeccccCCHHHcccCCHHHHHHhcCC
Confidence            368888876  46899999998542       100  0       00     000001 1112233333 2345577776


Q ss_pred             CceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEE--eCeEEEcccCCCCCCCCCCCCccccccCCCCCccEEe
Q 020533           97 GPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS--GRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIH  174 (325)
Q Consensus        97 ~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~--ad~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~  174 (325)
                      ..  +++++|++++..+  +  +|.+.+..++    .. +.  ||+||+|||  +.|..|++||++.-        .+++
T Consensus        60 ~~--~~~~~V~~id~~~--~--~v~~~~~~~~----~~-~~~~yd~lIiATG--~~p~~~~i~G~~~~--------~v~~  118 (427)
T TIGR03385        60 DV--KTNHEVIEVNDER--Q--TVVVRNNKTN----ET-YEESYDYLILSPG--ASPIVPNIEGINLD--------IVFT  118 (427)
T ss_pred             eE--EecCEEEEEECCC--C--EEEEEECCCC----CE-EecCCCEEEECCC--CCCCCCCCCCcCCC--------CEEE
Confidence            54  7899999997644  3  4544433221    35 66  999999999  68888889887521        1232


Q ss_pred             cCCCCCC-------CCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533          175 STQYKNG-------KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       175 ~~~~~~~-------~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                      .....+.       ....+++|+|||+|.+|+|+|..|++.|.+|+++.+.+.
T Consensus       119 ~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~  171 (427)
T TIGR03385       119 LRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSER  171 (427)
T ss_pred             ECCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence            2221110       124578999999999999999999999999999999884

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=99.51  E-value=9.5e-14  Score=128.47  Aligned_cols=158  Identities=23%  Similarity=0.328  Sum_probs=112.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+||||||+||++|..|+++|+.|++||+.+..||.-.+               ..+         .|....++.+.
T Consensus       123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y---------------GIP---------~~kl~k~i~d~  178 (457)
T COG0493         123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY---------------GIP---------DFKLPKDILDR  178 (457)
T ss_pred             CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe---------------cCc---------hhhccchHHHH
Confidence            478999999999999999999999999999999999987443               222         33334467788


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA  166 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~~  166 (325)
                      ..++.++.|+.  ++.++++-.          .++.+..       .  -.+|.|++|+|. ..|+..++||.+.     
T Consensus       179 ~i~~l~~~Gv~--~~~~~~vG~----------~it~~~L-------~--~e~Dav~l~~G~-~~~~~l~i~g~d~-----  231 (457)
T COG0493         179 RLELLERSGVE--FKLNVRVGR----------DITLEEL-------L--KEYDAVFLATGA-GKPRPLDIPGEDA-----  231 (457)
T ss_pred             HHHHHHHcCeE--EEEcceECC----------cCCHHHH-------H--HhhCEEEEeccc-cCCCCCCCCCcCC-----
Confidence            88888888844  477777621          1333322       1  234999999996 4666667888752     


Q ss_pred             CCCccEEecCC------------C--CCCCCCCCCeEEEECcCCCHHHHHHHHhhccC-eEEEEEec
Q 020533          167 TGTGEVIHSTQ------------Y--KNGKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRS  218 (325)
Q Consensus       167 ~~~g~~~~~~~------------~--~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~-~v~~~~r~  218 (325)
                        .| +....+            +  .....-.+|+|+|||+|.|++|++......|. +|+.++|.
T Consensus       232 --~g-v~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~  295 (457)
T COG0493         232 --KG-VAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYRE  295 (457)
T ss_pred             --Cc-chHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEeccc
Confidence              12 111111            1  11222346999999999999999999999987 68888643

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=99.47  E-value=7.4e-13  Score=124.71  Aligned_cols=175  Identities=19%  Similarity=0.224  Sum_probs=126.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHh---cCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSL---QSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF   83 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~---~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (325)
                      +.+++|||.|.+|..+...+++   .-+++++|-..+++.       |+...++.        .+      +.-.+.+++
T Consensus         3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~n-------Y~Ri~Ls~--------vl------~~~~~~edi   61 (793)
T COG1251           3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPN-------YNRILLSS--------VL------AGEKTAEDI   61 (793)
T ss_pred             ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCcc-------ccceeecc--------cc------CCCccHHHH
Confidence            3579999999999999999998   356899998887643       54443321        00      011123455


Q ss_pred             HHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccc
Q 020533           84 IEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC  163 (325)
Q Consensus        84 ~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~  163 (325)
                      .-.-.++++++++.  ++.+.+|+.++++.    -+|+++.+       .. +.+|.+|+|||  |.|++|++||.+.+ 
T Consensus        62 ~l~~~dwy~~~~i~--L~~~~~v~~idr~~----k~V~t~~g-------~~-~~YDkLilATG--S~pfi~PiPG~~~~-  124 (793)
T COG1251          62 SLNRNDWYEENGIT--LYTGEKVIQIDRAN----KVVTTDAG-------RT-VSYDKLIIATG--SYPFILPIPGSDLP-  124 (793)
T ss_pred             hccchhhHHHcCcE--EEcCCeeEEeccCc----ceEEccCC-------cE-eecceeEEecC--ccccccCCCCCCCC-
Confidence            55556778888855  49999999998765    55777765       66 89999999999  89999999998764 


Q ss_pred             cCCCCCccEEecCCCCCC-----CCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhh
Q 020533          164 SSATGTGEVIHSTQYKNG-----KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREM  227 (325)
Q Consensus       164 ~~~~~~g~~~~~~~~~~~-----~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~  227 (325)
                            + ++....+.+.     .....++-+|||+|.-|+|+|..|...|-++++++-++ ++|-+..
T Consensus       125 ------~-v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~-~lMerQL  185 (793)
T COG1251         125 ------G-VFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAP-TLMERQL  185 (793)
T ss_pred             ------C-eeEEecHHHHHHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCceEEEeecc-hHHHHhh
Confidence                  2 3332322221     11234567999999999999999999999999999888 4544443

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.47  E-value=1.8e-13  Score=121.02  Aligned_cols=135  Identities=16%  Similarity=0.211  Sum_probs=94.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC--------ccCC-C--CCCceEeecC---CCc----cCCCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS--------IWKK-Y--SYDRLRLHLA---KQF----CQLPHL   68 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg--------~w~~-~--~y~~~~~~~~---~~~----~~~~~~   68 (325)
                      .+||+||||||+||.||..+++.|.+|+|||+++.+|-        -++. |  .++....+.|   ..+    ..|...
T Consensus         3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~   82 (408)
T COG2081           3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPE   82 (408)
T ss_pred             cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHH
Confidence            57999999999999999999999999999999997662        2221 1  1112222222   111    111110


Q ss_pred             CCC-------------CCCCCCC---CHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCcee
Q 020533           69 PFP-------------SSYPMFV---SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREI  132 (325)
Q Consensus        69 ~~~-------------~~~~~~~---~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~  132 (325)
                      .+.             +.-+.||   ....+.+-|...+++.++..  +.+++|.+++.++  ..+.+.+.++       
T Consensus        83 d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i--~~~~~v~~v~~~~--~~f~l~t~~g-------  151 (408)
T COG2081          83 DFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTI--RTRSRVSSVEKDD--SGFRLDTSSG-------  151 (408)
T ss_pred             HHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEE--EecceEEeEEecC--ceEEEEcCCC-------
Confidence            000             0112333   56889999999999998665  9999999999876  6788888875       


Q ss_pred             EEEEEeCeEEEcccCCCCCCC
Q 020533          133 EEYYSGRFLVVASGETTNPFT  153 (325)
Q Consensus       133 ~~~~~ad~vIiAtG~~~~p~~  153 (325)
                      .+ ++||.+|+|||..|.|.+
T Consensus       152 ~~-i~~d~lilAtGG~S~P~l  171 (408)
T COG2081         152 ET-VKCDSLILATGGKSWPKL  171 (408)
T ss_pred             CE-EEccEEEEecCCcCCCCC
Confidence            47 999999999998777743

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=99.47  E-value=1.1e-12  Score=104.96  Aligned_cols=126  Identities=21%  Similarity=0.253  Sum_probs=92.2

Q ss_pred             EEECCChHHHHHHHHHHhc-----CCCeEEEecCCCC-CCccCCCCCCceEeecCCCccCC-CCCC---C----------
Q 020533           11 IMVGAGTSGLATAACLSLQ-----SIPYVILERENCY-ASIWKKYSYDRLRLHLAKQFCQL-PHLP---F----------   70 (325)
Q Consensus        11 ~IIGaG~~Gl~~a~~L~~~-----g~~v~v~e~~~~~-Gg~w~~~~y~~~~~~~~~~~~~~-~~~~---~----------   70 (325)
                      +|||+|++|++++.+|.++     ..+|+|||+++.. |+.|.....+...+|++...++. +..+   +          
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~   80 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD   80 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence            6999999999999999987     4589999997764 46888766666777776554443 2211   0          


Q ss_pred             ---CCCCCCCCCHHHHHHHHHHHHHHc------CCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeE
Q 020533           71 ---PSSYPMFVSRAQFIEHLDHYVSHF------NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFL  141 (325)
Q Consensus        71 ---~~~~~~~~~~~~~~~yl~~~a~~~------~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~v  141 (325)
                         ......|+++..+.+||.+..+..      ++.. .+...+|++++..+  +.|.|.+.++       .. +.||.|
T Consensus        81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v-~~~~~~V~~i~~~~--~~~~v~~~~g-------~~-~~~d~V  149 (156)
T PF13454_consen   81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITV-RHVRAEVVDIRRDD--DGYRVVTADG-------QS-IRADAV  149 (156)
T ss_pred             cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEE-EEEeeEEEEEEEcC--CcEEEEECCC-------CE-EEeCEE
Confidence               112247899999999999887764      2222 13456888988876  6688888775       56 899999


Q ss_pred             EEcccC
Q 020533          142 VVASGE  147 (325)
Q Consensus       142 IiAtG~  147 (325)
                      |+|||+
T Consensus       150 vLa~Gh  155 (156)
T PF13454_consen  150 VLATGH  155 (156)
T ss_pred             EECCCC
Confidence            999995

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=99.44  E-value=7.3e-13  Score=115.61  Aligned_cols=165  Identities=22%  Similarity=0.215  Sum_probs=107.4

Q ss_pred             CCCCCeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHH
Q 020533            4 QAAGVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRA   81 (325)
Q Consensus         4 ~~~~~~v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (325)
                      +....+|+|||+||||+.+|..|.++  +++|.|+|+.+.+.|..++..-                       |.++.-.
T Consensus        17 qs~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVA-----------------------PDHpEvK   73 (468)
T KOG1800|consen   17 QSSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVA-----------------------PDHPEVK   73 (468)
T ss_pred             ccCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccC-----------------------CCCcchh
Confidence            33456999999999999999999985  6899999999999887664311                       1223333


Q ss_pred             HHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccc
Q 020533           82 QFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCS  161 (325)
Q Consensus        82 ~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~  161 (325)
                      .+..-+.+.+++..+..  ..|.+|   ..       .+.+..        -+ -.+|.||+|.|+ ..++..+|||.+.
T Consensus        74 nvintFt~~aE~~rfsf--~gNv~v---G~-------dvsl~e--------L~-~~ydavvLaYGa-~~dR~L~IPGe~l  131 (468)
T KOG1800|consen   74 NVINTFTKTAEHERFSF--FGNVKV---GR-------DVSLKE--------LT-DNYDAVVLAYGA-DGDRRLDIPGEEL  131 (468)
T ss_pred             hHHHHHHHHhhccceEE--Eeccee---cc-------cccHHH--------Hh-hcccEEEEEecC-CCCcccCCCCccc
Confidence            34455566666643322  333333   00       123332        23 467899999997 4566778999862


Q ss_pred             cccCCCCCccEEecCC---C----C----CCCCCCCCeEEEECcCCCHHHHHHHHhhc----------------------
Q 020533          162 FCSSATGTGEVIHSTQ---Y----K----NGKPYGGKNVLVVGSGNSGMEIALDLANH----------------------  208 (325)
Q Consensus       162 ~~~~~~~~g~~~~~~~---~----~----~~~~~~~~~v~VvG~G~s~~e~a~~l~~~----------------------  208 (325)
                             .+ ++-+..   |    +    ...++.+.+|+|||.|+.|+|+|..|...                      
T Consensus       132 -------~~-V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~  203 (468)
T KOG1800|consen  132 -------SG-VISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSN  203 (468)
T ss_pred             -------cc-ceehhhhhhhccCCCcccccCcccccceEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCC
Confidence                   22 111111   1    0    13456789999999999999999987532                      


Q ss_pred             cCeEEEEEecCCe
Q 020533          209 AAKTSLVVRSPVH  221 (325)
Q Consensus       209 ~~~v~~~~r~~~~  221 (325)
                      -.+|+++.|++..
T Consensus       204 VkdV~lvgRRgp~  216 (468)
T KOG1800|consen  204 VKDVKLVGRRGPL  216 (468)
T ss_pred             cceEEEEeccCcc
Confidence            1368888888743

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=99.41  E-value=3.7e-12  Score=112.96  Aligned_cols=203  Identities=18%  Similarity=0.139  Sum_probs=126.8

Q ss_pred             CCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHH
Q 020533            5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI   84 (325)
Q Consensus         5 ~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (325)
                      .++++|+|+|+|-+|.++++.|...-++|+|+..++.+-=+|.                      .|...-.-..-..+.
T Consensus        53 ~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPL----------------------LpS~~vGTve~rSIv  110 (491)
T KOG2495|consen   53 GKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPL----------------------LPSTTVGTVELRSIV  110 (491)
T ss_pred             CCCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeec----------------------cCCccccceeehhhh
Confidence            3568999999999999999999999999999998875322211                      111111222334566


Q ss_pred             HHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCcccccc
Q 020533           85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS  164 (325)
Q Consensus        85 ~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~  164 (325)
                      +-+...+.+-.-..+ .+..+...++.+.  +...+.....++.. .... +.+|+||+|+|  ..++.+.+||..+.. 
T Consensus       111 EPIr~i~r~k~~~~~-y~eAec~~iDp~~--k~V~~~s~t~~~~~-~e~~-i~YDyLViA~G--A~~~TFgipGV~e~~-  182 (491)
T KOG2495|consen  111 EPIRAIARKKNGEVK-YLEAECTKIDPDN--KKVHCRSLTADSSD-KEFV-IGYDYLVIAVG--AEPNTFGIPGVEENA-  182 (491)
T ss_pred             hhHHHHhhccCCCce-EEecccEeecccc--cEEEEeeeccCCCc-ceee-ecccEEEEecc--CCCCCCCCCchhhch-
Confidence            666666665432221 4555566665543  44333332222211 3367 89999999999  778888999876530 


Q ss_pred             CCCCCccEEecCCC-------------C---CCCCCCCCeEEEECcCCCHHHHHHHHhhc--------------cCeEEE
Q 020533          165 SATGTGEVIHSTQY-------------K---NGKPYGGKNVLVVGSGNSGMEIALDLANH--------------AAKTSL  214 (325)
Q Consensus       165 ~~~~~g~~~~~~~~-------------~---~~~~~~~~~v~VvG~G~s~~e~a~~l~~~--------------~~~v~~  214 (325)
                        ..-..+-++++.             .   +++..+--+++|||||++|+|+|.+|+..              -.+||+
T Consensus       183 --~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtL  260 (491)
T KOG2495|consen  183 --HFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTL  260 (491)
T ss_pred             --hhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEe
Confidence              001112221111             1   11112234689999999999999999853              137898


Q ss_pred             EEecCCeeechhhHHHHHHHHhhCCH
Q 020533          215 VVRSPVHVLSREMVYLGVVLFKYVPF  240 (325)
Q Consensus       215 ~~r~~~~~~p~~~~~~~~~~~~~~p~  240 (325)
                      +.-.| ++|+..+..+..+..+.+..
T Consensus       261 iEA~d-~iL~mFdkrl~~yae~~f~~  285 (491)
T KOG2495|consen  261 IEAAD-HILNMFDKRLVEYAENQFVR  285 (491)
T ss_pred             eccch-hHHHHHHHHHHHHHHHHhhh
Confidence            98888 78888877776665555443

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.39  E-value=1.7e-12  Score=119.22  Aligned_cols=134  Identities=19%  Similarity=0.285  Sum_probs=74.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC------ccCCC------CCCceEee---cCCCcc----CCC--
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS------IWKKY------SYDRLRLH---LAKQFC----QLP--   66 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg------~w~~~------~y~~~~~~---~~~~~~----~~~--   66 (325)
                      |||+|||||+|||.||..|++.|.+|+|+||++.+|-      ..+.|      .+......   .+..+.    .|+  
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~   80 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE   80 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence            6999999999999999999999999999999998762      22211      00111111   000000    000  


Q ss_pred             ---------CCCC--CCCCCCCC---CHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCcee
Q 020533           67 ---------HLPF--PSSYPMFV---SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREI  132 (325)
Q Consensus        67 ---------~~~~--~~~~~~~~---~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~  132 (325)
                               ..+.  .++.+.||   ...++.+.|...+++.++..  +++++|.+++.++ ++.|.|.+++.       
T Consensus        81 d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i--~~~~~V~~i~~~~-~~~f~v~~~~~-------  150 (409)
T PF03486_consen   81 DLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEI--HFNTRVKSIEKKE-DGVFGVKTKNG-------  150 (409)
T ss_dssp             HHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EE--E-S--EEEEEEET-TEEEEEEETTT-------
T ss_pred             HHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEE--EeCCEeeeeeecC-CceeEeeccCc-------
Confidence                     0000  00111222   46788889999999988665  9999999998865 34488888432       


Q ss_pred             EEEEEeCeEEEcccCCCCCC
Q 020533          133 EEYYSGRFLVVASGETTNPF  152 (325)
Q Consensus       133 ~~~~~ad~vIiAtG~~~~p~  152 (325)
                      .. +.||.||+|||..+.|.
T Consensus       151 ~~-~~a~~vILAtGG~S~p~  169 (409)
T PF03486_consen  151 GE-YEADAVILATGGKSYPK  169 (409)
T ss_dssp             EE-EEESEEEE----SSSGG
T ss_pred             cc-ccCCEEEEecCCCCccc
Confidence            67 99999999999776554

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=99.37  E-value=6e-12  Score=111.37  Aligned_cols=128  Identities=16%  Similarity=0.196  Sum_probs=86.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCC----------CCc---------eEeecC-CCccCCCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYS----------YDR---------LRLHLA-KQFCQLPH   67 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~----------y~~---------~~~~~~-~~~~~~~~   67 (325)
                      +||+|||||++|+++|..|++.|++|+|+|+.+..+..|....          ...         ...... ....   .
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~   77 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSV---E   77 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEE---E
Confidence            5899999999999999999999999999999987654332210          000         000000 0000   0


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533           68 LPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                      .+.+.......++.++.+.|.+.+.+.++..  +++++|+++..++  +.+.+.+...      ..+ +++|+||+|+|.
T Consensus        78 ~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~--~~~~~v~~~~~~~--~~~~~~~~~~------~~~-~~a~~vv~a~G~  146 (295)
T TIGR02032        78 IPIETELAYVIDRDAFDEQLAERAQEAGAEL--RLGTTVLDVEIHD--DRVVVIVRGG------EGT-VTAKIVIGADGS  146 (295)
T ss_pred             eccCCCcEEEEEHHHHHHHHHHHHHHcCCEE--EeCcEEeeEEEeC--CEEEEEEcCc------cEE-EEeCEEEECCCc
Confidence            1111111123578899999999998887554  8999999998765  4555554432      157 899999999997


Q ss_pred             CC
Q 020533          148 TT  149 (325)
Q Consensus       148 ~~  149 (325)
                      ++
T Consensus       147 ~s  148 (295)
T TIGR02032       147 RS  148 (295)
T ss_pred             ch
Confidence            65

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK06847 hypothetical protein; Provisional

Probab=99.35  E-value=5e-11  Score=109.42  Aligned_cols=134  Identities=19%  Similarity=0.201  Sum_probs=87.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC----ccCC--------------------CCCCceEeecC--C
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS----IWKK--------------------YSYDRLRLHLA--K   60 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg----~w~~--------------------~~y~~~~~~~~--~   60 (325)
                      ..||+|||||++||++|..|.+.|++|+|+|+++....    ....                    .......+..+  .
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g~   83 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDGT   83 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCCC
Confidence            46899999999999999999999999999999874321    0000                    00111111111  0


Q ss_pred             CccCCCCCCC-CCCC--CCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEE
Q 020533           61 QFCQLPHLPF-PSSY--PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS  137 (325)
Q Consensus        61 ~~~~~~~~~~-~~~~--~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~  137 (325)
                      ....++.... ...+  .....+.++.++|.+.+.+.++.  ++++++|++++.++  +.+.+.+.++       .+ +.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~--~~~~v~~~~g-------~~-~~  151 (375)
T PRK06847         84 LLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGAD--VRLGTTVTAIEQDD--DGVTVTFSDG-------TT-GR  151 (375)
T ss_pred             EEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCE--EEeCCEEEEEEEcC--CEEEEEEcCC-------CE-EE
Confidence            0111111000 0011  12456789999999999887754  49999999998754  5677777654       56 89


Q ss_pred             eCeEEEcccCCCCCC
Q 020533          138 GRFLVVASGETTNPF  152 (325)
Q Consensus       138 ad~vIiAtG~~~~p~  152 (325)
                      +|.||.|+|.++..+
T Consensus       152 ad~vI~AdG~~s~~r  166 (375)
T PRK06847        152 YDLVVGADGLYSKVR  166 (375)
T ss_pred             cCEEEECcCCCcchh
Confidence            999999999876543

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=99.34  E-value=2.2e-11  Score=112.27  Aligned_cols=135  Identities=16%  Similarity=0.155  Sum_probs=86.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecC-CC---CCCccCC--------------CCCCceEeecCCCccCCCCCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERE-NC---YASIWKK--------------YSYDRLRLHLAKQFCQLPHLP   69 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~-~~---~Gg~w~~--------------~~y~~~~~~~~~~~~~~~~~~   69 (325)
                      |||+||||||+|+++|+.|++.|++|+|+|++ +.   .|+....              +.+.+..+..+.........+
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIP   80 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccC
Confidence            69999999999999999999999999999997 32   1221110              112223332222100000111


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecC---CCCceeEEEEEeCeEEEccc
Q 020533           70 FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLL---SPGREIEEYYSGRFLVVASG  146 (325)
Q Consensus        70 ~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~---~~~~~~~~~~~ad~vIiAtG  146 (325)
                      .+..+.....+..+.++|.+.+.+.|...  +. ++|+++..++  +.+.|++.++.   ++  +..+ +++|.||.|+|
T Consensus        81 ~~~~~~~~~~r~~fd~~L~~~a~~~G~~v--~~-~~v~~v~~~~--~~~~v~~~~~~~~~~~--~~~~-i~a~~VI~AdG  152 (388)
T TIGR02023        81 SEDGYVGMVRREVFDSYLRERAQKAGAEL--IH-GLFLKLERDR--DGVTLTYRTPKKGAGG--EKGS-VEADVVIGADG  152 (388)
T ss_pred             CCCCceEeeeHHHHHHHHHHHHHhCCCEE--Ee-eEEEEEEEcC--CeEEEEEEeccccCCC--cceE-EEeCEEEECCC
Confidence            11111123788999999999999888654  44 4688887654  67888776421   11  2257 89999999999


Q ss_pred             CCCC
Q 020533          147 ETTN  150 (325)
Q Consensus       147 ~~~~  150 (325)
                      .+|.
T Consensus       153 ~~S~  156 (388)
T TIGR02023       153 ANSP  156 (388)
T ss_pred             CCcH
Confidence            7663

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK08244 hypothetical protein; Provisional

Probab=99.33  E-value=4.1e-11  Score=114.00  Aligned_cols=134  Identities=19%  Similarity=0.231  Sum_probs=86.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC-------------------ccCC-----CCCCceEeecCCCc
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS-------------------IWKK-----YSYDRLRLHLAKQF   62 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg-------------------~w~~-----~~y~~~~~~~~~~~   62 (325)
                      ++||+||||||+||++|..|++.|++|+|+||.+....                   .|..     ..+...........
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~   81 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTR   81 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEeccccc
Confidence            37999999999999999999999999999999874321                   1100     00111111100000


Q ss_pred             cCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEE
Q 020533           63 CQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLV  142 (325)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vI  142 (325)
                      ..+...+.+..+....++..+.+.|.+.+++.++.  +++++++++++.++  +.+++++.+.++.    .+ +++|+||
T Consensus        82 ~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~--v~~~~~v~~i~~~~--~~v~v~~~~~~g~----~~-i~a~~vV  152 (493)
T PRK08244         82 LDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVE--IFRGAEVLAVRQDG--DGVEVVVRGPDGL----RT-LTSSYVV  152 (493)
T ss_pred             CCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCe--EEeCCEEEEEEEcC--CeEEEEEEeCCcc----EE-EEeCEEE
Confidence            11111111111112356788999999988887755  59999999998765  4566766543221    57 8999999


Q ss_pred             EcccCCC
Q 020533          143 VASGETT  149 (325)
Q Consensus       143 iAtG~~~  149 (325)
                      .|+|.+|
T Consensus       153 gADG~~S  159 (493)
T PRK08244        153 GADGAGS  159 (493)
T ss_pred             ECCCCCh
Confidence            9999876

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=99.33  E-value=4e-12  Score=123.41  Aligned_cols=158  Identities=20%  Similarity=0.245  Sum_probs=105.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      ..++|+|||+||+||++|.+|.+.|+.|+|+||.+++||...+.               +|         ..-....+.+
T Consensus      1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~yg---------------ip---------nmkldk~vv~ 1839 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYG---------------IP---------NMKLDKFVVQ 1839 (2142)
T ss_pred             cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeec---------------CC---------ccchhHHHHH
Confidence            35799999999999999999999999999999999999975432               21         1122234556


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~  165 (325)
                      .--+...+-|+..  ..|+++-.          .+..+.        -. -..|.+|+|+|. ..|+..++||.+.-  .
T Consensus      1840 rrv~ll~~egi~f--~tn~eigk----------~vs~d~--------l~-~~~daiv~a~gs-t~prdlpv~grd~k--g 1895 (2142)
T KOG0399|consen 1840 RRVDLLEQEGIRF--VTNTEIGK----------HVSLDE--------LK-KENDAIVLATGS-TTPRDLPVPGRDLK--G 1895 (2142)
T ss_pred             HHHHHHHhhCceE--Eeeccccc----------cccHHH--------Hh-hccCeEEEEeCC-CCCcCCCCCCcccc--c
Confidence            6666677777654  55555411          022221        11 245889999996 57777788887641  0


Q ss_pred             CCCCccEEecCC--C------CCCCCCCCCeEEEECcCCCHHHHHHHHhhccCe
Q 020533          166 ATGTGEVIHSTQ--Y------KNGKPYGGKNVLVVGSGNSGMEIALDLANHAAK  211 (325)
Q Consensus       166 ~~~~g~~~~~~~--~------~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~  211 (325)
                      +...-+.+|...  .      -+....+||+|+|||+|.+|-|+...-.++|.+
T Consensus      1896 v~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~ 1949 (2142)
T KOG0399|consen 1896 VHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCK 1949 (2142)
T ss_pred             cHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhccc
Confidence            000111222110  0      111345799999999999999999999999865

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=99.33  E-value=5.1e-11  Score=114.46  Aligned_cols=138  Identities=18%  Similarity=0.270  Sum_probs=90.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC------------------------CCCceEeecC--
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY------------------------SYDRLRLHLA--   59 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~------------------------~y~~~~~~~~--   59 (325)
                      ..+||+||||||+|+++|..|++.|++|+|+||.+.+....+..                        ..........  
T Consensus         9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g   88 (538)
T PRK06183          9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKG   88 (538)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCC
Confidence            46899999999999999999999999999999997554221110                        0111222111  


Q ss_pred             CCccCCCC-CCCCCCCC--CCCCHHHHHHHHHHHHHHc-CCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEE
Q 020533           60 KQFCQLPH-LPFPSSYP--MFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY  135 (325)
Q Consensus        60 ~~~~~~~~-~~~~~~~~--~~~~~~~~~~yl~~~a~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~  135 (325)
                      .....+.. ...+..++  ....+.++.++|.+.+.++ ++  .++++++|++++.++  +.+++++++.++   +..+ 
T Consensus        89 ~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv--~v~~g~~v~~i~~~~--~~v~v~~~~~~G---~~~~-  160 (538)
T PRK06183         89 RCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHV--RVRFGHEVTALTQDD--DGVTVTLTDADG---QRET-  160 (538)
T ss_pred             CEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCc--EEEcCCEEEEEEEcC--CeEEEEEEcCCC---CEEE-
Confidence            11111111 00001111  2346778888998888775 54  459999999998865  567787764322   2367 


Q ss_pred             EEeCeEEEcccCCCCC
Q 020533          136 YSGRFLVVASGETTNP  151 (325)
Q Consensus       136 ~~ad~vIiAtG~~~~p  151 (325)
                      +++|+||.|+|.+|.-
T Consensus       161 i~ad~vVgADG~~S~v  176 (538)
T PRK06183        161 VRARYVVGCDGANSFV  176 (538)
T ss_pred             EEEEEEEecCCCchhH
Confidence            8999999999987743

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=99.32  E-value=3.8e-11  Score=110.81  Aligned_cols=129  Identities=19%  Similarity=0.202  Sum_probs=84.7

Q ss_pred             eEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCc----eEe-----ecCCCc--cCCCCCCCCCCCC-C
Q 020533            9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDR----LRL-----HLAKQF--CQLPHLPFPSSYP-M   76 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~----~~~-----~~~~~~--~~~~~~~~~~~~~-~   76 (325)
                      ||+|||||++|+++|..|++.|++|+|+|+++.+|+.+....+..    +.+     +.-...  +.++........+ .
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG   80 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence            799999999999999999999999999999987776332221111    000     000000  0011110000111 1


Q ss_pred             CCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533           77 FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (325)
Q Consensus        77 ~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~  149 (325)
                      ...+.++.+++.+.+.+.++.   .+.++|..+..+. .+.|.|++.++       .+ ++++.||.|+|..+
T Consensus        81 ~i~~~~l~~~l~~~~~~~gv~---~~~~~v~~i~~~~-~~~~~v~~~~g-------~~-~~a~~VI~A~G~~s  141 (388)
T TIGR01790        81 SVDSTRLHEELLQKCPEGGVL---WLERKAIHAEADG-VALSTVYCAGG-------QR-IQARLVIDARGFGP  141 (388)
T ss_pred             EEcHHHHHHHHHHHHHhcCcE---EEccEEEEEEecC-CceeEEEeCCC-------CE-EEeCEEEECCCCch
Confidence            257789999999998888753   4567888887652 46688877653       46 89999999999765

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.31  E-value=1.9e-11  Score=105.81  Aligned_cols=137  Identities=18%  Similarity=0.205  Sum_probs=86.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC-ccCCC-CCCceEeecC-CCc---cCCCCCCCCCCCCCCCCH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS-IWKKY-SYDRLRLHLA-KQF---CQLPHLPFPSSYPMFVSR   80 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg-~w~~~-~y~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~   80 (325)
                      .+||+||||||+|+++|..|++.|++|+|+|++..+|| .|... .++...+..+ ..+   ..++....... .....+
T Consensus        25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g-~~~vd~  103 (257)
T PRK04176         25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDG-LYVADS  103 (257)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCc-ceeccH
Confidence            58999999999999999999999999999999988765 45322 1221111100 000   01111111111 112466


Q ss_pred             HHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEee------cCCCCceeEEEEEeCeEEEcccCCC
Q 020533           81 AQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASN------LLSPGREIEEYYSGRFLVVASGETT  149 (325)
Q Consensus        81 ~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~------~~~~~~~~~~~~~ad~vIiAtG~~~  149 (325)
                      .++...|.+.+.+.+...  +++++|.++..+++...+-+....      +.+.  +... +.|+.||+|||+.+
T Consensus       104 ~~l~~~L~~~A~~~Gv~I--~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~--~~~~-i~Ak~VI~ATG~~a  173 (257)
T PRK04176        104 VEAAAKLAAAAIDAGAKI--FNGVSVEDVILREDPRVAGVVINWTPVEMAGLHV--DPLT-IEAKAVVDATGHDA  173 (257)
T ss_pred             HHHHHHHHHHHHHcCCEE--EcCceeceeeEeCCCcEEEEEEccccccccCCCC--CcEE-EEcCEEEEEeCCCc
Confidence            788888998898888654  899999998765422222232221      1110  2257 99999999999754

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=99.30  E-value=1.3e-11  Score=112.08  Aligned_cols=135  Identities=21%  Similarity=0.227  Sum_probs=85.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC----------------------CC--CC--ceEeecC--
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK----------------------YS--YD--RLRLHLA--   59 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~----------------------~~--y~--~~~~~~~--   59 (325)
                      +||+||||||+|+++|..|+++|++|+|||+++........                      ..  ..  .......  
T Consensus         2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~   81 (356)
T PF01494_consen    2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGIS   81 (356)
T ss_dssp             EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETT
T ss_pred             ceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccC
Confidence            69999999999999999999999999999998754321110                      00  00  0111111  


Q ss_pred             ---------CCccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCc
Q 020533           60 ---------KQFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR  130 (325)
Q Consensus        60 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~  130 (325)
                               .....+. ............+.++.+.|.+.+++.+  ..+++++++++++.+.  +..++.+.....+  
T Consensus        82 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~l~~~L~~~~~~~g--v~i~~~~~v~~~~~d~--~~~~~~~~~~~~g--  154 (356)
T PF01494_consen   82 DSRIWVENPQIREDME-IDTKGPYGHVIDRPELDRALREEAEERG--VDIRFGTRVVSIEQDD--DGVTVVVRDGEDG--  154 (356)
T ss_dssp             TSEEEEEEEEEEEECH-STSGSSCEEEEEHHHHHHHHHHHHHHHT--EEEEESEEEEEEEEET--TEEEEEEEETCTC--
T ss_pred             Cccceeeecccceeee-ccccCCcchhhhHHHHHHhhhhhhhhhh--hhheeeeecccccccc--cccccccccccCC--
Confidence                     0000010 0000111123467899999999999988  4559999999998776  5566666555333  


Q ss_pred             eeEEEEEeCeEEEcccCCCC
Q 020533          131 EIEEYYSGRFLVVASGETTN  150 (325)
Q Consensus       131 ~~~~~~~ad~vIiAtG~~~~  150 (325)
                      +..+ +++|.||.|.|.+|.
T Consensus       155 ~~~~-i~adlvVgADG~~S~  173 (356)
T PF01494_consen  155 EEET-IEADLVVGADGAHSK  173 (356)
T ss_dssp             EEEE-EEESEEEE-SGTT-H
T ss_pred             ceeE-EEEeeeecccCcccc
Confidence            3357 999999999998763

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.30  E-value=6.3e-11  Score=110.50  Aligned_cols=131  Identities=17%  Similarity=0.130  Sum_probs=83.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCc------cCCCC----CCceE---------------eecCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI------WKKYS----YDRLR---------------LHLAKQ   61 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~------w~~~~----y~~~~---------------~~~~~~   61 (325)
                      .+||+||||||+|+++|..|+++|++|+|+||.+.+|..      .....    ++...               ......
T Consensus         5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (428)
T PRK10157          5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKS   84 (428)
T ss_pred             cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCC
Confidence            589999999999999999999999999999998765421      11100    11000               000000


Q ss_pred             cc--CCCCCC--CCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEE
Q 020533           62 FC--QLPHLP--FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS  137 (325)
Q Consensus        62 ~~--~~~~~~--~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~  137 (325)
                      ..  .+....  .+........+.++.++|.+.+++.|+..  +.+++|+++..++  +.+.+...++       .+ +.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i--~~~~~V~~i~~~~--g~v~~v~~~g-------~~-i~  152 (428)
T PRK10157         85 AMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQL--ITGIRVDNLVQRD--GKVVGVEADG-------DV-IE  152 (428)
T ss_pred             ceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEE--ECCCEEEEEEEeC--CEEEEEEcCC-------cE-EE
Confidence            00  010000  00011122467889999999999888654  8999999987654  4443333221       56 89


Q ss_pred             eCeEEEcccCCC
Q 020533          138 GRFLVVASGETT  149 (325)
Q Consensus       138 ad~vIiAtG~~~  149 (325)
                      |+.||+|+|..+
T Consensus       153 A~~VI~A~G~~s  164 (428)
T PRK10157        153 AKTVILADGVNS  164 (428)
T ss_pred             CCEEEEEeCCCH
Confidence            999999999754

>PLN02463 lycopene beta cyclase

Probab=99.29  E-value=5.5e-11  Score=110.78  Aligned_cols=127  Identities=14%  Similarity=0.137  Sum_probs=84.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC-----CCccCC------------CCCCceEeecCCCccCCCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY-----ASIWKK------------YSYDRLRLHLAKQFCQLPHL   68 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~-----Gg~w~~------------~~y~~~~~~~~~~~~~~~~~   68 (325)
                      ..+||+||||||+|+++|..|++.|++|+|+|+++..     .|.|..            ..++...+..+....    .
T Consensus        27 ~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~----~  102 (447)
T PLN02463         27 RVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKK----K  102 (447)
T ss_pred             cCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCC----c
Confidence            3579999999999999999999999999999997632     233321            011111111100000    0


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCC
Q 020533           69 PFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET  148 (325)
Q Consensus        69 ~~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~  148 (325)
                      ..... -....+.++.+++.+.+...++.   ...++|++++..+  +.+.|++.++       .+ +.||.||.|+|..
T Consensus       103 ~~~~~-y~~V~R~~L~~~Ll~~~~~~GV~---~~~~~V~~I~~~~--~~~~V~~~dG-------~~-i~A~lVI~AdG~~  168 (447)
T PLN02463        103 DLDRP-YGRVNRKKLKSKMLERCIANGVQ---FHQAKVKKVVHEE--SKSLVVCDDG-------VK-IQASLVLDATGFS  168 (447)
T ss_pred             cccCc-ceeEEHHHHHHHHHHHHhhcCCE---EEeeEEEEEEEcC--CeEEEEECCC-------CE-EEcCEEEECcCCC
Confidence            00001 12357889999999988887764   3357899988764  5678887764       56 8999999999976


Q ss_pred             CC
Q 020533          149 TN  150 (325)
Q Consensus       149 ~~  150 (325)
                      +.
T Consensus       169 s~  170 (447)
T PLN02463        169 RC  170 (447)
T ss_pred             cC
Confidence            53

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.29  E-value=3.8e-11  Score=103.59  Aligned_cols=141  Identities=21%  Similarity=0.252  Sum_probs=87.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC-CccCCCC-CCceEeecC-CCccCCCCCCCCCCCC--CCCCH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA-SIWKKYS-YDRLRLHLA-KQFCQLPHLPFPSSYP--MFVSR   80 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~G-g~w~~~~-y~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~   80 (325)
                      ..+||+||||||+||++|+.|++.|++|+|+||+..+| ++|.... ++.+.+..+ ..+..-...++.....  ....+
T Consensus        20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~   99 (254)
T TIGR00292        20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADS   99 (254)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeH
Confidence            35899999999999999999999999999999999886 4665431 222211111 0011101111111111  12356


Q ss_pred             HHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCC-CcEEEEEeec----CCCCceeEEEEEeCeEEEcccCCC
Q 020533           81 AQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEAT-NMWNVKASNL----LSPGREIEEYYSGRFLVVASGETT  149 (325)
Q Consensus        81 ~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~-~~~~v~~~~~----~~~~~~~~~~~~ad~vIiAtG~~~  149 (325)
                      .++.+.|.+.+.+.+..  ++++++|.++..+++. ...-|.+...    .+...++.. +.++.||.|||+.+
T Consensus       100 ~el~~~L~~~a~e~GV~--I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~-i~Ak~VVdATG~~a  170 (254)
T TIGR00292       100 AEFISTLASKALQAGAK--IFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLT-QRSRVVVDATGHDA  170 (254)
T ss_pred             HHHHHHHHHHHHHcCCE--EECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEE-EEcCEEEEeecCCc
Confidence            78889999999888855  4899999998876532 1112222211    000002267 99999999999643

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=99.29  E-value=1.2e-10  Score=112.07  Aligned_cols=140  Identities=17%  Similarity=0.248  Sum_probs=89.2

Q ss_pred             CCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC--------------CCC----------CceE-ee
Q 020533            3 EQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK--------------YSY----------DRLR-LH   57 (325)
Q Consensus         3 ~~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~--------------~~y----------~~~~-~~   57 (325)
                      ..+..+||+||||||+||++|..|.+.|++|+|+|+++.+....+.              ...          .... ..
T Consensus        19 ~~~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~   98 (547)
T PRK08132         19 DDPARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFL   98 (547)
T ss_pred             CCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEe
Confidence            3445689999999999999999999999999999999855321110              000          0000 00


Q ss_pred             cCCCccCCCCCCCC-CCCC--CCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEE
Q 020533           58 LAKQFCQLPHLPFP-SSYP--MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEE  134 (325)
Q Consensus        58 ~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~  134 (325)
                      .......+...+.. ..++  ...++..+.++|.+.+.+++. ..++++++|++++.++  +.++++++..++.    .+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~-v~v~~~~~v~~i~~~~--~~v~v~~~~~~g~----~~  171 (547)
T PRK08132         99 RDEEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPN-IDLRWKNKVTGLEQHD--DGVTLTVETPDGP----YT  171 (547)
T ss_pred             CCCeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCC-cEEEeCCEEEEEEEcC--CEEEEEEECCCCc----EE
Confidence            11111111111100 1111  124677888999988877632 4569999999998765  5677766543221    47


Q ss_pred             EEEeCeEEEcccCCCC
Q 020533          135 YYSGRFLVVASGETTN  150 (325)
Q Consensus       135 ~~~ad~vIiAtG~~~~  150 (325)
                       +.+|+||.|+|.+|.
T Consensus       172 -i~ad~vVgADG~~S~  186 (547)
T PRK08132        172 -LEADWVIACDGARSP  186 (547)
T ss_pred             -EEeCEEEECCCCCcH
Confidence             899999999997764

>PRK06184 hypothetical protein; Provisional

Probab=99.28  E-value=1.2e-10  Score=111.08  Aligned_cols=134  Identities=18%  Similarity=0.274  Sum_probs=86.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC------ccCC------------------CCCCceEeecC-CC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS------IWKK------------------YSYDRLRLHLA-KQ   61 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg------~w~~------------------~~y~~~~~~~~-~~   61 (325)
                      .+||+||||||+||++|..|++.|++|+|+||.+.+..      .+..                  ..++....... ..
T Consensus         3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~   82 (502)
T PRK06184          3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGS   82 (502)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCce
Confidence            47999999999999999999999999999999875421      1100                  01111111111 00


Q ss_pred             ccCCCCCC-------CCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEE
Q 020533           62 FCQLPHLP-------FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEE  134 (325)
Q Consensus        62 ~~~~~~~~-------~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~  134 (325)
                      ........       .+.......++..+.+.|.+.+.+.++  .+++++++++++.++  +.+++++....++    .+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv--~i~~~~~v~~i~~~~--~~v~v~~~~~~~~----~~  154 (502)
T PRK06184         83 VAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGH--RVEFGCELVGFEQDA--DGVTARVAGPAGE----ET  154 (502)
T ss_pred             EEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCC--EEEeCcEEEEEEEcC--CcEEEEEEeCCCe----EE
Confidence            00000000       000111234577788888888888775  459999999998765  5577776443222    67


Q ss_pred             EEEeCeEEEcccCCC
Q 020533          135 YYSGRFLVVASGETT  149 (325)
Q Consensus       135 ~~~ad~vIiAtG~~~  149 (325)
                       +++|+||.|+|.+|
T Consensus       155 -i~a~~vVgADG~~S  168 (502)
T PRK06184        155 -VRARYLVGADGGRS  168 (502)
T ss_pred             -EEeCEEEECCCCch
Confidence             89999999999876

>PRK06834 hypothetical protein; Provisional

Probab=99.27  E-value=1e-10  Score=110.68  Aligned_cols=132  Identities=20%  Similarity=0.297  Sum_probs=85.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC-------CccCC--------CCCCceE-----ee---cCCCcc
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA-------SIWKK--------YSYDRLR-----LH---LAKQFC   63 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~G-------g~w~~--------~~y~~~~-----~~---~~~~~~   63 (325)
                      .+||+||||||+|+++|..|++.|++|+|+|+.+...       +.+..        ..++.+.     ..   ......
T Consensus         3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~   82 (488)
T PRK06834          3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRL   82 (488)
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEec
Confidence            4799999999999999999999999999999986421       11110        0000000     00   000000


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEE
Q 020533           64 QLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVV  143 (325)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIi  143 (325)
                      .+...+....+.....+..+.+.|.+.+++.++.  ++++++|++++.++  +.+.+++.++       .+ +++|+||.
T Consensus        83 ~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~--i~~~~~v~~v~~~~--~~v~v~~~~g-------~~-i~a~~vVg  150 (488)
T PRK06834         83 DISDFPTRHNYGLALWQNHIERILAEWVGELGVP--IYRGREVTGFAQDD--TGVDVELSDG-------RT-LRAQYLVG  150 (488)
T ss_pred             ccccCCCCCCccccccHHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEcC--CeEEEEECCC-------CE-EEeCEEEE
Confidence            1111111111123346788889999988888754  59999999998765  5677766442       46 89999999


Q ss_pred             cccCCCC
Q 020533          144 ASGETTN  150 (325)
Q Consensus       144 AtG~~~~  150 (325)
                      |+|.+|.
T Consensus       151 ADG~~S~  157 (488)
T PRK06834        151 CDGGRSL  157 (488)
T ss_pred             ecCCCCC
Confidence            9998763

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=99.27  E-value=6.4e-11  Score=109.46  Aligned_cols=132  Identities=17%  Similarity=0.137  Sum_probs=87.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC--CCCC----ceE--------eecCCCccCCCCC----
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK--YSYD----RLR--------LHLAKQFCQLPHL----   68 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~--~~y~----~~~--------~~~~~~~~~~~~~----   68 (325)
                      ++||+||||||||++||+.|++.|++|+++|+.+.+|.--..  ..++    .+.        ..+......++..    
T Consensus         3 ~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~   82 (396)
T COG0644           3 EYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAI   82 (396)
T ss_pred             eeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEE
Confidence            589999999999999999999999999999999877742111  0000    000        0000000001100    


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCC
Q 020533           69 PFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET  148 (325)
Q Consensus        69 ~~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~  148 (325)
                      ..+........+..+.++|.+.|++.|...  +.++++..+..++  +.+.+....++      .+ +++++||.|+|..
T Consensus        83 ~~~~~~~y~v~R~~fd~~La~~A~~aGae~--~~~~~~~~~~~~~--~~~~~~~~~~~------~e-~~a~~vI~AdG~~  151 (396)
T COG0644          83 EVPVGEGYIVDRAKFDKWLAERAEEAGAEL--YPGTRVTGVIRED--DGVVVGVRAGD------DE-VRAKVVIDADGVN  151 (396)
T ss_pred             ecCCCceEEEEhHHhhHHHHHHHHHcCCEE--EeceEEEEEEEeC--CcEEEEEEcCC------EE-EEcCEEEECCCcc
Confidence            000010122467889999999999999776  9999999998875  44444444421      57 8999999999964


Q ss_pred             C
Q 020533          149 T  149 (325)
Q Consensus       149 ~  149 (325)
                      +
T Consensus       152 s  152 (396)
T COG0644         152 S  152 (396)
T ss_pred             h
Confidence            3

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.26  E-value=1.3e-10  Score=108.27  Aligned_cols=137  Identities=18%  Similarity=0.281  Sum_probs=83.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC-----C----------------ccCC---C--CCCceEeecC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA-----S----------------IWKK---Y--SYDRLRLHLA   59 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~G-----g----------------~w~~---~--~y~~~~~~~~   59 (325)
                      ..+||+|||||++|+++|..|++.|++|+|+|+.+...     .                .|..   .  ....+.+...
T Consensus        17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~   96 (415)
T PRK07364         17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDA   96 (415)
T ss_pred             cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeC
Confidence            46899999999999999999999999999999987542     1                1110   0  0111111100


Q ss_pred             C--CccCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEE
Q 020533           60 K--QFCQLPHLPFPSSY-PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYY  136 (325)
Q Consensus        60 ~--~~~~~~~~~~~~~~-~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~  136 (325)
                      .  ....+......... .....+..+.+.|.+.+...+ ...+++++++++++.++  +.+.|++.+.++    ..+ +
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~v~i~~~~~v~~v~~~~--~~~~v~~~~~~~----~~~-i  168 (415)
T PRK07364         97 DYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCP-NITWLCPAEVVSVEYQQ--DAATVTLEIEGK----QQT-L  168 (415)
T ss_pred             CCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCC-CcEEEcCCeeEEEEecC--CeeEEEEccCCc----ceE-E
Confidence            0  01111111111110 111233467777777776652 13458899999997765  567787764322    157 8


Q ss_pred             EeCeEEEcccCCCC
Q 020533          137 SGRFLVVASGETTN  150 (325)
Q Consensus       137 ~ad~vIiAtG~~~~  150 (325)
                      +||.||.|+|.+|.
T Consensus       169 ~adlvIgADG~~S~  182 (415)
T PRK07364        169 QSKLVVAADGARSP  182 (415)
T ss_pred             eeeEEEEeCCCCch
Confidence            99999999998764

>PRK08013 oxidoreductase; Provisional

Probab=99.26  E-value=7.7e-11  Score=109.16  Aligned_cols=133  Identities=17%  Similarity=0.232  Sum_probs=85.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC-------------------------CccCCC------CCCceE
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA-------------------------SIWKKY------SYDRLR   55 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~G-------------------------g~w~~~------~y~~~~   55 (325)
                      .+||+||||||+|+++|..|++.|++|+|+|+.+...                         |.|..-      .+..+.
T Consensus         3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~   82 (400)
T PRK08013          3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGME   82 (400)
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEE
Confidence            4799999999999999999999999999999987522                         111110      111122


Q ss_pred             eecCCCcc--CCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCcee
Q 020533           56 LHLAKQFC--QLPHLPFPSSY-PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREI  132 (325)
Q Consensus        56 ~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~  132 (325)
                      +..+....  .+......... .....+..+.+.|.+.+.... ...++++++|++++.++  +.+.+++.++       
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~v~i~~~~~v~~i~~~~--~~v~v~~~~g-------  152 (400)
T PRK08013         83 VWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSS-DITLLAPAELQQVAWGE--NEAFLTLKDG-------  152 (400)
T ss_pred             EEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCC-CcEEEcCCeeEEEEecC--CeEEEEEcCC-------
Confidence            21111000  01100000000 113567888888888887752 13459999999998765  4567776553       


Q ss_pred             EEEEEeCeEEEcccCCCC
Q 020533          133 EEYYSGRFLVVASGETTN  150 (325)
Q Consensus       133 ~~~~~ad~vIiAtG~~~~  150 (325)
                      .+ +++|.||.|+|.+|.
T Consensus       153 ~~-i~a~lvVgADG~~S~  169 (400)
T PRK08013        153 SM-LTARLVVGADGANSW  169 (400)
T ss_pred             CE-EEeeEEEEeCCCCcH
Confidence            56 899999999998764

>PRK06126 hypothetical protein; Provisional

Probab=99.26  E-value=2.1e-10  Score=110.51  Aligned_cols=142  Identities=18%  Similarity=0.210  Sum_probs=88.5

Q ss_pred             CCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC-----C-----------------CCC------c
Q 020533            2 KEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-----Y-----------------SYD------R   53 (325)
Q Consensus         2 ~~~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~-----~-----------------~y~------~   53 (325)
                      ...+..++|+||||||+||++|..|+++|++|+|+|+.+.....-+.     +                 .++      .
T Consensus         2 ~~~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~   81 (545)
T PRK06126          2 MENTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDI   81 (545)
T ss_pred             CCCCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCc
Confidence            33455689999999999999999999999999999998743211000     0                 000      0


Q ss_pred             eEee--cCCCccCCCCCC------C--------CC-CCCCCCCHHHHHHHHHHHHHHc-CCCceeeeCeEEEEEEEcCCC
Q 020533           54 LRLH--LAKQFCQLPHLP------F--------PS-SYPMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEAT  115 (325)
Q Consensus        54 ~~~~--~~~~~~~~~~~~------~--------~~-~~~~~~~~~~~~~yl~~~a~~~-~l~~~i~~~~~V~~i~~~~~~  115 (325)
                      ....  .......+....      .        .. ......++..+.+.|.+.+.+. ++  .++++++|++++.++  
T Consensus        82 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v--~i~~~~~v~~i~~~~--  157 (545)
T PRK06126         82 AYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGV--TLRYGHRLTDFEQDA--  157 (545)
T ss_pred             eEEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCc--eEEeccEEEEEEECC--
Confidence            0000  000010010000      0        00 0012356777888888888765 44  459999999998765  


Q ss_pred             CcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533          116 NMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (325)
Q Consensus       116 ~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~  150 (325)
                      +.+++++.+..++  +..+ +.+|+||.|+|.+|.
T Consensus       158 ~~v~v~~~~~~~g--~~~~-i~ad~vVgADG~~S~  189 (545)
T PRK06126        158 DGVTATVEDLDGG--ESLT-IRADYLVGCDGARSA  189 (545)
T ss_pred             CeEEEEEEECCCC--cEEE-EEEEEEEecCCcchH
Confidence            5566776653332  3357 899999999998763

>PRK07190 hypothetical protein; Provisional

Probab=99.26  E-value=1.6e-10  Score=109.23  Aligned_cols=131  Identities=17%  Similarity=0.214  Sum_probs=84.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC------------------------CCCceEeecCCCc
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY------------------------SYDRLRLHLAKQF   62 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~------------------------~y~~~~~~~~~~~   62 (325)
                      .+||+||||||+||++|..|++.|++|+|+|+.+.....-+..                        .+...........
T Consensus         5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~   84 (487)
T PRK07190          5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKF   84 (487)
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCce
Confidence            4799999999999999999999999999999987543211110                        0000000000111


Q ss_pred             cC-----CCCCC-CCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEE
Q 020533           63 CQ-----LPHLP-FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYY  136 (325)
Q Consensus        63 ~~-----~~~~~-~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~  136 (325)
                      ..     +...+ .........++..+.+.|.+.+.+.++.  ++++++|++++.++  +.+.+.+.++       .+ +
T Consensus        85 i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~--v~~~~~v~~l~~~~--~~v~v~~~~g-------~~-v  152 (487)
T PRK07190         85 ISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAA--VKRNTSVVNIELNQ--AGCLTTLSNG-------ER-I  152 (487)
T ss_pred             EeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEcC--CeeEEEECCC-------cE-E
Confidence            00     00000 0000112246778888888888888755  49999999998865  4566665442       57 8


Q ss_pred             EeCeEEEcccCCC
Q 020533          137 SGRFLVVASGETT  149 (325)
Q Consensus       137 ~ad~vIiAtG~~~  149 (325)
                      +|++||.|+|.+|
T Consensus       153 ~a~~vVgADG~~S  165 (487)
T PRK07190        153 QSRYVIGADGSRS  165 (487)
T ss_pred             EeCEEEECCCCCH
Confidence            9999999999766

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.26  E-value=1.8e-12  Score=108.28  Aligned_cols=152  Identities=21%  Similarity=0.248  Sum_probs=86.0

Q ss_pred             eEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH---
Q 020533            9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE---   85 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---   85 (325)
                      ||+|||||++|+.+|..|++.+.+++++|+.+..+.....  .       +...       ..   ........+..   
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~--~-------~~~~-------~~---~~~~~~~~~~~~~~   61 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGC--I-------PSPL-------LV---EIAPHRHEFLPARL   61 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSH--H-------HHHH-------HH---HHHHHHHHHHHHHH
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEeccccccccccc--c-------cccc-------cc---cccccccccccccc
Confidence            7999999999999999999999999999887743210000  0       0000       00   00000001110   


Q ss_pred             -HHHHHHHHcCCCceeeeCeEEEEEEEcCCC---CcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccc
Q 020533           86 -HLDHYVSHFNIGPSIRYQRSVESASYDEAT---NMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCS  161 (325)
Q Consensus        86 -yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~---~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~  161 (325)
                       .+.+.+...++.  +++++++.+++.....   ..+.+.......    ..+ +.||+||+|||  +.|+.|.+||.+.
T Consensus        62 ~~~~~~~~~~~v~--~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~----~~~-~~~d~lviAtG--~~~~~~~i~g~~~  132 (201)
T PF07992_consen   62 FKLVDQLKNRGVE--IRLNAKVVSIDPESKRVVCPAVTIQVVETGD----GRE-IKYDYLVIATG--SRPRTPNIPGEEV  132 (201)
T ss_dssp             GHHHHHHHHHTHE--EEHHHTEEEEEESTTEEEETCEEEEEEETTT----EEE-EEEEEEEEEST--EEEEEESSTTTTT
T ss_pred             cccccccccceEE--EeeccccccccccccccccCcccceeeccCC----ceE-ecCCeeeecCc--cccceeecCCCcc
Confidence             122222334433  3688899999776521   123333322221    277 99999999999  7788888888632


Q ss_pred             cccCCCCCccEEecCCCCCCCCCCCCeEEEEC
Q 020533          162 FCSSATGTGEVIHSTQYKNGKPYGGKNVLVVG  193 (325)
Q Consensus       162 ~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG  193 (325)
                      ..    ....+.++..+..... ..++|+|||
T Consensus       133 ~~----~~~~~~~~~~~~~~~~-~~~~v~VvG  159 (201)
T PF07992_consen  133 AY----FLRGVDDAQRFLELLE-SPKRVAVVG  159 (201)
T ss_dssp             EC----BTTSEEHHHHHHTHSS-TTSEEEEES
T ss_pred             cc----cccccccccccccccc-ccccccccc
Confidence            10    0123344443333222 245999999

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=99.25  E-value=1.3e-10  Score=107.41  Aligned_cols=134  Identities=14%  Similarity=0.225  Sum_probs=85.9

Q ss_pred             CCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC----C--------------------ccCCC------CCCce
Q 020533            5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA----S--------------------IWKKY------SYDRL   54 (325)
Q Consensus         5 ~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~G----g--------------------~w~~~------~y~~~   54 (325)
                      ...+||+||||||+|+++|..|+++|++|+|+|+.+...    +                    .|...      .+..+
T Consensus         4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~   83 (392)
T PRK08773          4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRM   83 (392)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEE
Confidence            345899999999999999999999999999999986421    1                    11100      01111


Q ss_pred             EeecCC--CccCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCce
Q 020533           55 RLHLAK--QFCQLPHLPF-PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE  131 (325)
Q Consensus        55 ~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~  131 (325)
                      .+....  ....+..... .........+..+.+.|.+.+++.++.  ++++++|++++.++  +.+.|++.++      
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~--i~~~~~v~~i~~~~--~~v~v~~~~g------  153 (392)
T PRK08773         84 RVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQ--LHCPARVVALEQDA--DRVRLRLDDG------  153 (392)
T ss_pred             EEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCE--EEcCCeEEEEEecC--CeEEEEECCC------
Confidence            111100  0011111000 001111245678888888888887754  49999999998765  5677776543      


Q ss_pred             eEEEEEeCeEEEcccCCCC
Q 020533          132 IEEYYSGRFLVVASGETTN  150 (325)
Q Consensus       132 ~~~~~~ad~vIiAtG~~~~  150 (325)
                       .+ +.+|.||.|+|.++.
T Consensus       154 -~~-~~a~~vV~AdG~~S~  170 (392)
T PRK08773        154 -RR-LEAALAIAADGAAST  170 (392)
T ss_pred             -CE-EEeCEEEEecCCCch
Confidence             46 899999999997663

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.24  E-value=9.8e-11  Score=108.02  Aligned_cols=133  Identities=19%  Similarity=0.300  Sum_probs=86.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC------------------CccCCC-----CCCceEeecCCC-
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA------------------SIWKKY-----SYDRLRLHLAKQ-   61 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~G------------------g~w~~~-----~y~~~~~~~~~~-   61 (325)
                      ..+||+|||||++|+++|..|++.|++|+|+|+.+..+                  |.|..-     .+..+.+..... 
T Consensus         6 ~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~   85 (388)
T PRK07494          6 EHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGR   85 (388)
T ss_pred             CCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCC
Confidence            35799999999999999999999999999999986432                  112110     111222211110 


Q ss_pred             cc-----CCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEE
Q 020533           62 FC-----QLPHLPFPS-SYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY  135 (325)
Q Consensus        62 ~~-----~~~~~~~~~-~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~  135 (325)
                      ..     .+....... .+....++..+.+.|.+.+.+++...  +++++|++++.++  +.|.|++.++       .+ 
T Consensus        86 ~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~--~~~~~v~~i~~~~--~~~~v~~~~g-------~~-  153 (388)
T PRK07494         86 LIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT--RFGDEAESVRPRE--DEVTVTLADG-------TT-  153 (388)
T ss_pred             CCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE--EECCeeEEEEEcC--CeEEEEECCC-------CE-
Confidence            00     000000000 11112567788888888887775433  8899999998754  6688877653       56 


Q ss_pred             EEeCeEEEcccCCCC
Q 020533          136 YSGRFLVVASGETTN  150 (325)
Q Consensus       136 ~~ad~vIiAtG~~~~  150 (325)
                      +.+|.||.|+|.+|.
T Consensus       154 ~~a~~vI~AdG~~S~  168 (388)
T PRK07494        154 LSARLVVGADGRNSP  168 (388)
T ss_pred             EEEeEEEEecCCCch
Confidence            899999999997663

>PRK07045 putative monooxygenase; Reviewed

Probab=99.22  E-value=3.6e-10  Score=104.32  Aligned_cols=136  Identities=21%  Similarity=0.254  Sum_probs=85.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC----CC--ccCCC-------------------CCCceEeecCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY----AS--IWKKY-------------------SYDRLRLHLAK   60 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~----Gg--~w~~~-------------------~y~~~~~~~~~   60 (325)
                      .++||+||||||+|+++|..|++.|++|+|+|+.+..    ++  .+...                   ....+......
T Consensus         4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g   83 (388)
T PRK07045          4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDK   83 (388)
T ss_pred             ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCC
Confidence            3579999999999999999999999999999998754    21  11110                   01111111111


Q ss_pred             C-ccCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEe
Q 020533           61 Q-FCQLPHLPF-PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSG  138 (325)
Q Consensus        61 ~-~~~~~~~~~-~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~a  138 (325)
                      . ...++.... +..+....++.++.+.|.+.+.... ...++++++|++++.+++...+.|++.++       .+ +.+
T Consensus        84 ~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~-gv~i~~~~~v~~i~~~~~~~~~~v~~~~g-------~~-~~~  154 (388)
T PRK07045         84 ELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLP-NVRLRFETSIERIERDADGTVTSVTLSDG-------ER-VAP  154 (388)
T ss_pred             cEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCC-CeeEEeCCEEEEEEECCCCcEEEEEeCCC-------CE-EEC
Confidence            1 111111000 0111112467788888887765432 24469999999998875333456776543       46 899


Q ss_pred             CeEEEcccCCCC
Q 020533          139 RFLVVASGETTN  150 (325)
Q Consensus       139 d~vIiAtG~~~~  150 (325)
                      |.||.|+|.+|.
T Consensus       155 ~~vIgADG~~S~  166 (388)
T PRK07045        155 TVLVGADGARSM  166 (388)
T ss_pred             CEEEECCCCChH
Confidence            999999998763

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=99.22  E-value=9.1e-11  Score=95.54  Aligned_cols=137  Identities=20%  Similarity=0.246  Sum_probs=86.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC-CccCCC-CCCceEeecCCCcc-CCCCCCCCCCCC--CCCCHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA-SIWKKY-SYDRLRLHLAKQFC-QLPHLPFPSSYP--MFVSRA   81 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~G-g~w~~~-~y~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~   81 (325)
                      ..||+|+|||||||+||++|++.|++|+||||+-.+| |.|.-. .++.+...-+.... +--..++.+.-.  .-....
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~  109 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSA  109 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHH
Confidence            3699999999999999999999999999999998886 588654 35555554442211 000111111111  123556


Q ss_pred             HHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCC------cEEEEEeecCCCCceeEEEEEeCeEEEcccCC
Q 020533           82 QFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATN------MWNVKASNLLSPGREIEEYYSGRFLVVASGET  148 (325)
Q Consensus        82 ~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~------~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~  148 (325)
                      ++..-+...+-+.+...  .-.+.|+.+-..++..      .|+-....+-+-  .+.. +++++||-|||+-
T Consensus       110 e~~skl~~~a~~aGaki--~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhv--DPl~-i~a~~VvDaTGHd  177 (262)
T COG1635         110 EFASKLAARALDAGAKI--FNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHV--DPLT-IRAKAVVDATGHD  177 (262)
T ss_pred             HHHHHHHHHHHhcCcee--eecceEEEEEEecCCceEEEEEecchhhhccccc--Ccce-eeEEEEEeCCCCc
Confidence            67777777777777543  6677888775544321      233222221111  2357 8999999999963

>PRK06185 hypothetical protein; Provisional

Probab=99.22  E-value=2.5e-10  Score=106.00  Aligned_cols=135  Identities=19%  Similarity=0.357  Sum_probs=84.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC-----CCc--------------cCCC---C---CCceEeecCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY-----ASI--------------WKKY---S---YDRLRLHLAK   60 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~-----Gg~--------------w~~~---~---y~~~~~~~~~   60 (325)
                      ..+||+|||||++|+++|..|++.|++|+|+|+++..     |..              |..-   .   +..+......
T Consensus         5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~   84 (407)
T PRK06185          5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGG   84 (407)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECC
Confidence            3589999999999999999999999999999997642     211              2110   0   1111111111


Q ss_pred             C-c--cCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHc-CCCceeeeCeEEEEEEEcCCCCcE-EEEEeecCCCCceeEEE
Q 020533           61 Q-F--CQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMW-NVKASNLLSPGREIEEY  135 (325)
Q Consensus        61 ~-~--~~~~~~~~~~~~~~~~~~~~~~~yl~~~a~~~-~l~~~i~~~~~V~~i~~~~~~~~~-~v~~~~~~~~~~~~~~~  135 (325)
                      . .  ..+...+.+..+..+.++.++.++|.+.+.+. ++  .++++++|+++..++  +.+ .|.+...++   + .+ 
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v--~i~~~~~v~~~~~~~--~~v~~v~~~~~~g---~-~~-  155 (407)
T PRK06185         85 RTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNF--TLRMGAEVTGLIEEG--GRVTGVRARTPDG---P-GE-  155 (407)
T ss_pred             eEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCc--EEEeCCEEEEEEEeC--CEEEEEEEEcCCC---c-EE-
Confidence            1 0  11111111111223457788888888888765 44  458999999998764  333 344443221   1 47 


Q ss_pred             EEeCeEEEcccCCC
Q 020533          136 YSGRFLVVASGETT  149 (325)
Q Consensus       136 ~~ad~vIiAtG~~~  149 (325)
                      ++++.||.|+|.+|
T Consensus       156 i~a~~vI~AdG~~S  169 (407)
T PRK06185        156 IRADLVVGADGRHS  169 (407)
T ss_pred             EEeCEEEECCCCch
Confidence            89999999999876

>PRK10015 oxidoreductase; Provisional

Probab=99.21  E-value=3.3e-10  Score=105.65  Aligned_cols=132  Identities=14%  Similarity=0.135  Sum_probs=82.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC------ccCCCC----CCceEee------c---------CC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS------IWKKYS----YDRLRLH------L---------AK   60 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg------~w~~~~----y~~~~~~------~---------~~   60 (325)
                      .++||+||||||+|+++|+.|++.|++|+|+||.+.+|.      ......    .+.+...      .         ..
T Consensus         4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~   83 (429)
T PRK10015          4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEE   83 (429)
T ss_pred             cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCC
Confidence            358999999999999999999999999999999876542      111110    1111000      0         00


Q ss_pred             CccCCCC--CC--CCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEE
Q 020533           61 QFCQLPH--LP--FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYY  136 (325)
Q Consensus        61 ~~~~~~~--~~--~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~  136 (325)
                      ....+..  ..  .+........+..+.++|.+.+++.+...  +.+++|+.+..++  +.+.....+.       .+ +
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i--~~~~~V~~i~~~~--~~v~~v~~~~-------~~-i  151 (429)
T PRK10015         84 SAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQF--IPGVRVDALVREG--NKVTGVQAGD-------DI-L  151 (429)
T ss_pred             CceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEE--ECCcEEEEEEEeC--CEEEEEEeCC-------eE-E
Confidence            0000000  00  00000122467888889999999888654  8899999987654  4444322221       57 8


Q ss_pred             EeCeEEEcccCCC
Q 020533          137 SGRFLVVASGETT  149 (325)
Q Consensus       137 ~ad~vIiAtG~~~  149 (325)
                      .|+.||+|+|..+
T Consensus       152 ~A~~VI~AdG~~s  164 (429)
T PRK10015        152 EANVVILADGVNS  164 (429)
T ss_pred             ECCEEEEccCcch
Confidence            9999999999754

>PRK06753 hypothetical protein; Provisional

Probab=99.21  E-value=2.7e-10  Score=104.50  Aligned_cols=127  Identities=18%  Similarity=0.237  Sum_probs=82.0

Q ss_pred             eEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC------------------------CCCCceEeecCCCccC
Q 020533            9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK------------------------YSYDRLRLHLAKQFCQ   64 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~------------------------~~y~~~~~~~~~~~~~   64 (325)
                      +|+|||||++|+++|..|++.|++|+|+|+++.+......                        ...+......+... .
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~-~   80 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGT-L   80 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCC-E
Confidence            7999999999999999999999999999998754311000                        00111111111000 0


Q ss_pred             CCCCCCCCC-CCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEE
Q 020533           65 LPHLPFPSS-YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVV  143 (325)
Q Consensus        65 ~~~~~~~~~-~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIi  143 (325)
                      +...++... .....++..+.+.|.+.+..    ..++++++|++++.++  +.+.|++.++       .+ +.+|.||.
T Consensus        81 ~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~----~~i~~~~~v~~i~~~~--~~v~v~~~~g-------~~-~~~~~vig  146 (373)
T PRK06753         81 LNKVKLKSNTLNVTLHRQTLIDIIKSYVKE----DAIFTGKEVTKIENET--DKVTIHFADG-------ES-EAFDLCIG  146 (373)
T ss_pred             EeecccccCCccccccHHHHHHHHHHhCCC----ceEEECCEEEEEEecC--CcEEEEECCC-------CE-EecCEEEE
Confidence            000111100 11235778888888776543    3469999999998654  6688877654       56 89999999


Q ss_pred             cccCCCC
Q 020533          144 ASGETTN  150 (325)
Q Consensus       144 AtG~~~~  150 (325)
                      |.|.+|.
T Consensus       147 adG~~S~  153 (373)
T PRK06753        147 ADGIHSK  153 (373)
T ss_pred             CCCcchH
Confidence            9997764

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=99.21  E-value=8.3e-11  Score=98.62  Aligned_cols=124  Identities=17%  Similarity=0.182  Sum_probs=84.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCcc------------------------
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFC------------------------   63 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~------------------------   63 (325)
                      .+|+|||+|++|++||..|+..|.+|+||||...+||.-..++-++...+....++                        
T Consensus         2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~   81 (331)
T COG3380           2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWT   81 (331)
T ss_pred             CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeecc
Confidence            36999999999999999999999999999999999997666554444433322222                        


Q ss_pred             ----CCCCC---CCCCC--CCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEE
Q 020533           64 ----QLPHL---PFPSS--YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEE  134 (325)
Q Consensus        64 ----~~~~~---~~~~~--~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~  134 (325)
                          .+..-   +.++.  +..-+.-..+.+||.     .++.+  .++++|+.+-+.+  +.|+++.+++.      ..
T Consensus        82 ~~~~~~~~~~~~~~~d~~pyvg~pgmsalak~LA-----tdL~V--~~~~rVt~v~~~~--~~W~l~~~~g~------~~  146 (331)
T COG3380          82 PAVWTFTGDGSPPRGDEDPYVGEPGMSALAKFLA-----TDLTV--VLETRVTEVARTD--NDWTLHTDDGT------RH  146 (331)
T ss_pred             ccccccccCCCCCCCCCCccccCcchHHHHHHHh-----ccchh--hhhhhhhhheecC--CeeEEEecCCC------cc
Confidence                12111   11111  122233344444433     24444  9999999998874  88999997754      44


Q ss_pred             EEEeCeEEEcccC
Q 020533          135 YYSGRFLVVASGE  147 (325)
Q Consensus       135 ~~~ad~vIiAtG~  147 (325)
                       ..+|.||+|.=.
T Consensus       147 -~~~d~vvla~PA  158 (331)
T COG3380         147 -TQFDDVVLAIPA  158 (331)
T ss_pred             -cccceEEEecCC
Confidence             789999999864

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.21  E-value=2.3e-10  Score=106.04  Aligned_cols=131  Identities=20%  Similarity=0.313  Sum_probs=85.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhcC--CCeEEEecCCCCCC---------------------ccCC-----CCCCceEeecC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYAS---------------------IWKK-----YSYDRLRLHLA   59 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g--~~v~v~e~~~~~Gg---------------------~w~~-----~~y~~~~~~~~   59 (325)
                      +||+||||||+|+++|..|++.|  ++|+|+|+.+....                     .|..     ..+..+.....
T Consensus         2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~   81 (403)
T PRK07333          2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDS   81 (403)
T ss_pred             CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeC
Confidence            79999999999999999999995  99999999864211                     1100     00111111110


Q ss_pred             CC-------ccCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCce
Q 020533           60 KQ-------FCQLPHL-PFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE  131 (325)
Q Consensus        60 ~~-------~~~~~~~-~~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~  131 (325)
                      ..       ...+... .....+.....+.++.+.|.+.+.+.++.  ++++++|++++.++  +.+.|++.++      
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~--~~v~v~~~~g------  151 (403)
T PRK07333         82 RTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGID--LREATSVTDFETRD--EGVTVTLSDG------  151 (403)
T ss_pred             CCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEcC--CEEEEEECCC------
Confidence            00       0011000 00111112357889999999998887754  49999999998765  5677777553      


Q ss_pred             eEEEEEeCeEEEcccCCCC
Q 020533          132 IEEYYSGRFLVVASGETTN  150 (325)
Q Consensus       132 ~~~~~~ad~vIiAtG~~~~  150 (325)
                       .. +.+|.||.|+|.++.
T Consensus       152 -~~-~~ad~vI~AdG~~S~  168 (403)
T PRK07333        152 -SV-LEARLLVAADGARSK  168 (403)
T ss_pred             -CE-EEeCEEEEcCCCChH
Confidence             46 899999999997653

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.20  E-value=1.4e-10  Score=107.72  Aligned_cols=133  Identities=15%  Similarity=0.242  Sum_probs=83.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC-------------CC--------------ccCCC----C--CCc
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY-------------AS--------------IWKKY----S--YDR   53 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~-------------Gg--------------~w~~~----~--y~~   53 (325)
                      .+||+|||||++|+++|..|++.|++|+|+|+.+..             +.              .|..-    .  +..
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~   81 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSE   81 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcccee
Confidence            379999999999999999999999999999998621             10              11100    0  011


Q ss_pred             eEeecCCCc--cCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCc
Q 020533           54 LRLHLAKQF--CQLPHLPFP-SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR  130 (325)
Q Consensus        54 ~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~  130 (325)
                      +........  ..+...... ........+..+.+.|.+.+.+.++  .+++++++++++.++  +.|.|++.++     
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv--~v~~~~~v~~i~~~~--~~v~v~~~~g-----  152 (405)
T PRK05714         82 MQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDI--GLLANARLEQMRRSG--DDWLLTLADG-----  152 (405)
T ss_pred             EEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCC--EEEcCCEEEEEEEcC--CeEEEEECCC-----
Confidence            111111100  011100000 0001123456777777777776664  458999999998765  5688877653     


Q ss_pred             eeEEEEEeCeEEEcccCCCCC
Q 020533          131 EIEEYYSGRFLVVASGETTNP  151 (325)
Q Consensus       131 ~~~~~~~ad~vIiAtG~~~~p  151 (325)
                        .+ +.+|.||.|+|.+|.-
T Consensus       153 --~~-~~a~~vVgAdG~~S~v  170 (405)
T PRK05714        153 --RQ-LRAPLVVAADGANSAV  170 (405)
T ss_pred             --CE-EEeCEEEEecCCCchh
Confidence              46 8999999999987743

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=99.20  E-value=2.2e-10  Score=105.48  Aligned_cols=131  Identities=15%  Similarity=0.192  Sum_probs=83.9

Q ss_pred             eEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC--------CccCC-----------CC-----------CCceEeec
Q 020533            9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYA--------SIWKK-----------YS-----------YDRLRLHL   58 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~G--------g~w~~-----------~~-----------y~~~~~~~   58 (325)
                      ||+|||||++|+++|..|+++|++|+|+||.+..+        .....           ..           +..+....
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~   80 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD   80 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence            69999999999999999999999999999997532        10100           00           11111111


Q ss_pred             CCCc--cCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEE
Q 020533           59 AKQF--CQLPHLPFPS-SYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY  135 (325)
Q Consensus        59 ~~~~--~~~~~~~~~~-~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~  135 (325)
                      ....  ..+....... .......+.++.+.|.+.+.+.+ ...++++++|++++.++  +.+.++++++       .. 
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~v~~~~~v~~i~~~~--~~~~v~~~~g-------~~-  149 (385)
T TIGR01988        81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYP-NVTLLCPARVVELPRHS--DHVELTLDDG-------QQ-  149 (385)
T ss_pred             CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCC-CcEEecCCeEEEEEecC--CeeEEEECCC-------CE-
Confidence            1100  0011000000 01122567788888888888776 13459999999998765  6677777653       46 


Q ss_pred             EEeCeEEEcccCCCC
Q 020533          136 YSGRFLVVASGETTN  150 (325)
Q Consensus       136 ~~ad~vIiAtG~~~~  150 (325)
                      +.+|.||.|+|.++.
T Consensus       150 ~~~~~vi~adG~~S~  164 (385)
T TIGR01988       150 LRARLLVGADGANSK  164 (385)
T ss_pred             EEeeEEEEeCCCCCH
Confidence            899999999997664

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>TIGR02028 ChlP geranylgeranyl reductase

Probab=99.19  E-value=5.1e-10  Score=103.47  Aligned_cols=136  Identities=15%  Similarity=0.134  Sum_probs=83.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC------------------CCCCceEeecCCCc-cCCCCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK------------------YSYDRLRLHLAKQF-CQLPHL   68 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~------------------~~y~~~~~~~~~~~-~~~~~~   68 (325)
                      +||+||||||+|+++|..|++.|++|+|+|++...+..+..                  +...+..+..+... ..+...
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~   80 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRT   80 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccC
Confidence            48999999999999999999999999999998653321111                  01112222222111 001100


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEc-CCCCcEEEEEeecC----CCCceeEEEEEeCeEEE
Q 020533           69 PFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYD-EATNMWNVKASNLL----SPGREIEEYYSGRFLVV  143 (325)
Q Consensus        69 ~~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~-~~~~~~~v~~~~~~----~~~~~~~~~~~ad~vIi  143 (325)
                      .....+-....+..+.++|.+.+.+.|...  +.+ ++.+++.. ...+.+.|++...+    ++  +..+ ++|+.||.
T Consensus        81 ~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v--~~~-~~~~i~~~~~~~~~~~v~~~~~~~~~~~g--~~~~-i~a~~VIg  154 (398)
T TIGR02028        81 LKEHEYIGMLRREVLDSFLRRRAADAGATL--ING-LVTKLSLPADADDPYTLHYISSDSGGPSG--TRCT-LEVDAVIG  154 (398)
T ss_pred             CCCCCceeeeeHHHHHHHHHHHHHHCCcEE--Ecc-eEEEEEeccCCCceEEEEEeeccccccCC--CccE-EEeCEEEE
Confidence            001111123688999999999999988654  555 46666542 22355777654321    01  2257 89999999


Q ss_pred             cccCCC
Q 020533          144 ASGETT  149 (325)
Q Consensus       144 AtG~~~  149 (325)
                      |+|..|
T Consensus       155 ADG~~S  160 (398)
T TIGR02028       155 ADGANS  160 (398)
T ss_pred             CCCcch
Confidence            999765

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK08163 salicylate hydroxylase; Provisional

Probab=99.18  E-value=2.1e-10  Score=106.11  Aligned_cols=134  Identities=23%  Similarity=0.248  Sum_probs=84.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCc------cCC--------CCC----------CceEeec---C
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI------WKK--------YSY----------DRLRLHL---A   59 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~------w~~--------~~y----------~~~~~~~---~   59 (325)
                      +.||+|||||++||++|..|++.|++|+|+||.+.++..      |..        ...          .......   .
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~   83 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDA   83 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCCC
Confidence            469999999999999999999999999999998765421      100        000          0111100   0


Q ss_pred             CCccCCCCCC-CCCCC--C-CCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEE
Q 020533           60 KQFCQLPHLP-FPSSY--P-MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY  135 (325)
Q Consensus        60 ~~~~~~~~~~-~~~~~--~-~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~  135 (325)
                      .....++... ....+  + ....+.++.+.|.+.+.+.+ ...+++++++++++.++  +.+.+++.++       .+ 
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~v~~~~~~~v~~i~~~~--~~v~v~~~~g-------~~-  152 (396)
T PRK08163         84 EEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHP-LVEFRTSTHVVGIEQDG--DGVTVFDQQG-------NR-  152 (396)
T ss_pred             CEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcC-CcEEEeCCEEEEEecCC--CceEEEEcCC-------CE-
Confidence            0000000000 00000  1 12467788888888877654 13458999999998654  5677776553       56 


Q ss_pred             EEeCeEEEcccCCCCC
Q 020533          136 YSGRFLVVASGETTNP  151 (325)
Q Consensus       136 ~~ad~vIiAtG~~~~p  151 (325)
                      +.+|.||.|+|.+|..
T Consensus       153 ~~ad~vV~AdG~~S~~  168 (396)
T PRK08163        153 WTGDALIGCDGVKSVV  168 (396)
T ss_pred             EecCEEEECCCcChHH
Confidence            8999999999987644

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=99.18  E-value=3.6e-10  Score=104.23  Aligned_cols=134  Identities=21%  Similarity=0.287  Sum_probs=88.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC-CC---C----------------CccC---C---CCCCceEeecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN-CY---A----------------SIWK---K---YSYDRLRLHLAK   60 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~-~~---G----------------g~w~---~---~~y~~~~~~~~~   60 (325)
                      .+||+||||||+|+++|..|++.|++|+|+|+.+ ..   |                |.+.   .   ..+.........
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~   81 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG   81 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence            4799999999999999999999999999999982 11   1                0100   0   011111222111


Q ss_pred             C-ccCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEe
Q 020533           61 Q-FCQLPHLPFP-SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSG  138 (325)
Q Consensus        61 ~-~~~~~~~~~~-~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~a  138 (325)
                      . ...+...... .......++.++.+.|.+.+.+.+. ..++++++|+.++.++  +.+++++.. ++     .+ +.|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-v~~~~~~~v~~~~~~~--~~v~v~l~~-dG-----~~-~~a  151 (387)
T COG0654          82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPN-VTLRFGAEVEAVEQDG--DGVTVTLSF-DG-----ET-LDA  151 (387)
T ss_pred             ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCC-cEEEcCceEEEEEEcC--CceEEEEcC-CC-----cE-Eec
Confidence            1 1111111111 1112345788999999999988762 3459999999999876  566677773 22     57 999


Q ss_pred             CeEEEcccCCCC
Q 020533          139 RFLVVASGETTN  150 (325)
Q Consensus       139 d~vIiAtG~~~~  150 (325)
                      |.||.|.|.+|.
T Consensus       152 ~llVgADG~~S~  163 (387)
T COG0654         152 DLLVGADGANSA  163 (387)
T ss_pred             CEEEECCCCchH
Confidence            999999998763

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=99.17  E-value=3.1e-10  Score=104.79  Aligned_cols=133  Identities=18%  Similarity=0.314  Sum_probs=83.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC----C---------------------CccCCC------CCCce
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY----A---------------------SIWKKY------SYDRL   54 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~----G---------------------g~w~~~------~y~~~   54 (325)
                      +.+||+|||||++|+++|..|++.|++|+|+|+.+..    +                     |.|..-      .+..+
T Consensus         4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~   83 (391)
T PRK08020          4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRL   83 (391)
T ss_pred             ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceE
Confidence            3589999999999999999999999999999987521    1                     112110      01111


Q ss_pred             Eee-cCCCccCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHc-CCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCce
Q 020533           55 RLH-LAKQFCQLPHLPFPS-SYPMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE  131 (325)
Q Consensus        55 ~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~yl~~~a~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~  131 (325)
                      ... .......+....... .......+..+.+.|.+.+... ++.  ++++++|++++.++  +.|.|++.++      
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~--i~~~~~v~~i~~~~--~~~~v~~~~g------  153 (391)
T PRK08020         84 ETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVT--LRCPASLQALQRDD--DGWELTLADG------  153 (391)
T ss_pred             EEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcE--EEcCCeeEEEEEcC--CeEEEEECCC------
Confidence            110 000000011000000 0011245677888888877765 544  48899999987654  5688877653      


Q ss_pred             eEEEEEeCeEEEcccCCCC
Q 020533          132 IEEYYSGRFLVVASGETTN  150 (325)
Q Consensus       132 ~~~~~~ad~vIiAtG~~~~  150 (325)
                       .+ +++|.||.|+|.+|.
T Consensus       154 -~~-~~a~~vI~AdG~~S~  170 (391)
T PRK08020        154 -EE-IQAKLVIGADGANSQ  170 (391)
T ss_pred             -CE-EEeCEEEEeCCCCch
Confidence             46 899999999998764

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=99.16  E-value=4.1e-10  Score=103.85  Aligned_cols=130  Identities=14%  Similarity=0.196  Sum_probs=82.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC---CccCCCC----------------CC-----------ceEe
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA---SIWKKYS----------------YD-----------RLRL   56 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~G---g~w~~~~----------------y~-----------~~~~   56 (325)
                      ++||+|||||++|+++|..|++.|++|+|+|+.+...   ..|..+.                .+           .+.+
T Consensus         5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~   84 (388)
T PRK07608          5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRV   84 (388)
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEE
Confidence            5799999999999999999999999999999987642   2222110                00           0000


Q ss_pred             ecCCCccCCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHcC-CCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCcee
Q 020533           57 HLAKQFCQLPHLPFPSSYP---MFVSRAQFIEHLDHYVSHFN-IGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREI  132 (325)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~yl~~~a~~~~-l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~  132 (325)
                      ... ....+....+....+   ....+..+.+.|.+.+.+.+ +.  ++ +++|++++.++  +.+.|++.++       
T Consensus        85 ~~~-~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~--~~-~~~v~~i~~~~--~~~~v~~~~g-------  151 (388)
T PRK07608         85 FGD-AHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLT--WF-PARAQGLEVDP--DAATLTLADG-------  151 (388)
T ss_pred             EEC-CCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcE--EE-cceeEEEEecC--CeEEEEECCC-------
Confidence            000 000000000001111   11357788888888888776 43  25 88999887654  5677777653       


Q ss_pred             EEEEEeCeEEEcccCCCC
Q 020533          133 EEYYSGRFLVVASGETTN  150 (325)
Q Consensus       133 ~~~~~ad~vIiAtG~~~~  150 (325)
                      .+ +++|.||.|+|.++.
T Consensus       152 ~~-~~a~~vI~adG~~S~  168 (388)
T PRK07608        152 QV-LRADLVVGADGAHSW  168 (388)
T ss_pred             CE-EEeeEEEEeCCCCch
Confidence            46 899999999998664

>PRK07538 hypothetical protein; Provisional

Probab=99.16  E-value=2.6e-09  Score=99.45  Aligned_cols=137  Identities=18%  Similarity=0.224  Sum_probs=83.7

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC----Cc--cCC--------CCC----------CceEeecCC--C
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA----SI--WKK--------YSY----------DRLRLHLAK--Q   61 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~G----g~--w~~--------~~y----------~~~~~~~~~--~   61 (325)
                      +||+|||||++||++|..|++.|++|+|||+.+.+.    |.  +..        ..+          .........  .
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~   80 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQR   80 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCE
Confidence            379999999999999999999999999999987542    11  000        000          111111100  0


Q ss_pred             ccCCCCCCCCC--CCCC-CCCHHHHHHHHHHHHHH-cCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEE
Q 020533           62 FCQLPHLPFPS--SYPM-FVSRAQFIEHLDHYVSH-FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS  137 (325)
Q Consensus        62 ~~~~~~~~~~~--~~~~-~~~~~~~~~yl~~~a~~-~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~  137 (325)
                      ....+ .....  .++. ...+.++.+.|.+.+.+ .+. ..++++++|++++.++  +...+.+.++..+  +..+ +.
T Consensus        81 ~~~~~-~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~-~~i~~~~~v~~~~~~~--~~~~~~~~~~~~g--~~~~-~~  153 (413)
T PRK07538         81 IWSEP-RGLAAGYDWPQYSIHRGELQMLLLDAVRERLGP-DAVRTGHRVVGFEQDA--DVTVVFLGDRAGG--DLVS-VR  153 (413)
T ss_pred             Eeecc-CCcccCCCCceEEEEHHHHHHHHHHHHHhhcCC-cEEEcCCEEEEEEecC--CceEEEEeccCCC--ccce-EE
Confidence            00000 00000  1111 25678888888877654 453 3469999999998765  3355555543222  2257 89


Q ss_pred             eCeEEEcccCCCCC
Q 020533          138 GRFLVVASGETTNP  151 (325)
Q Consensus       138 ad~vIiAtG~~~~p  151 (325)
                      +|.||.|+|.+|.-
T Consensus       154 adlvIgADG~~S~v  167 (413)
T PRK07538        154 GDVLIGADGIHSAV  167 (413)
T ss_pred             eeEEEECCCCCHHH
Confidence            99999999987743

>PRK07588 hypothetical protein; Provisional

Probab=99.16  E-value=3.2e-10  Score=104.75  Aligned_cols=132  Identities=14%  Similarity=0.118  Sum_probs=83.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC--C-c---cCCC------------------CCCceEeecCC--C
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA--S-I---WKKY------------------SYDRLRLHLAK--Q   61 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~G--g-~---w~~~------------------~y~~~~~~~~~--~   61 (325)
                      .||+|||||++|+++|..|++.|++|+|+|+.+...  | .   |...                  ....+.+....  .
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~   80 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRR   80 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCE
Confidence            379999999999999999999999999999887542  1 1   1110                  01111111111  1


Q ss_pred             ccCCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEe
Q 020533           62 FCQLPHLPFPSSYP---MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSG  138 (325)
Q Consensus        62 ~~~~~~~~~~~~~~---~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~a  138 (325)
                      ...++...+.....   ...++.++.+.|.+.+.. +  ..++++++|++++.++  +.|+|+++++       .+ +.+
T Consensus        81 ~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~-~--v~i~~~~~v~~i~~~~--~~v~v~~~~g-------~~-~~~  147 (391)
T PRK07588         81 KADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDG-Q--VETIFDDSIATIDEHR--DGVRVTFERG-------TP-RDF  147 (391)
T ss_pred             EEEecHHHccccCCCceEEEEHHHHHHHHHHhhhc-C--eEEEeCCEEeEEEECC--CeEEEEECCC-------CE-EEe
Confidence            11111111111111   134567777777664432 3  4569999999998765  6688887764       46 789


Q ss_pred             CeEEEcccCCCCCC
Q 020533          139 RFLVVASGETTNPF  152 (325)
Q Consensus       139 d~vIiAtG~~~~p~  152 (325)
                      |.||.|+|.+|.-+
T Consensus       148 d~vIgADG~~S~vR  161 (391)
T PRK07588        148 DLVIGADGLHSHVR  161 (391)
T ss_pred             CEEEECCCCCccch
Confidence            99999999876543

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=99.16  E-value=5.1e-10  Score=102.63  Aligned_cols=121  Identities=24%  Similarity=0.303  Sum_probs=83.4

Q ss_pred             eEEEECCChHHHHHHHHH--HhcCCCeEEEecCCCC--CC--ccCC-------------CCCCceEeecCCCccCCCCCC
Q 020533            9 EVIMVGAGTSGLATAACL--SLQSIPYVILERENCY--AS--IWKK-------------YSYDRLRLHLAKQFCQLPHLP   69 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L--~~~g~~v~v~e~~~~~--Gg--~w~~-------------~~y~~~~~~~~~~~~~~~~~~   69 (325)
                      ||+|||||++|+++|.+|  .+.|.+|+|+|+++..  ..  +|..             ..|++..+..+.......   
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~---   77 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILI---   77 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEc---
Confidence            799999999999999999  7789999999998766  22  2321             112222222221111110   


Q ss_pred             CCCCCC-CCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCC
Q 020533           70 FPSSYP-MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET  148 (325)
Q Consensus        70 ~~~~~~-~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~  148 (325)
                         ..+ ....+..+.+++.+.+...+ .  ++++++|.+++...  ..+.|++.++       .+ ++|+.||.|+|..
T Consensus        78 ---~~~Y~~i~~~~f~~~l~~~~~~~~-~--~~~~~~V~~i~~~~--~~~~v~~~~g-------~~-i~a~~VvDa~g~~  141 (374)
T PF05834_consen   78 ---DYPYCMIDRADFYEFLLERAAAGG-V--IRLNARVTSIEETG--DGVLVVLADG-------RT-IRARVVVDARGPS  141 (374)
T ss_pred             ---ccceEEEEHHHHHHHHHHHhhhCC-e--EEEccEEEEEEecC--ceEEEEECCC-------CE-EEeeEEEECCCcc
Confidence               011 13678899999998888444 2  38999999998875  4677777765       57 9999999999953

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK11445 putative oxidoreductase; Provisional

Probab=99.16  E-value=7.2e-10  Score=100.83  Aligned_cols=132  Identities=14%  Similarity=0.152  Sum_probs=81.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC---------CCccCCC---------CC-CceEeecCCC----ccC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCY---------ASIWKKY---------SY-DRLRLHLAKQ----FCQ   64 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~---------Gg~w~~~---------~y-~~~~~~~~~~----~~~   64 (325)
                      +||+||||||+|+++|..|++. ++|+++|+.+..         |+....+         .. +......+..    ...
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~   80 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTID   80 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEec
Confidence            7999999999999999999999 999999988743         2211100         00 0000000000    000


Q ss_pred             CCC-CCCCCCCC-CCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEE
Q 020533           65 LPH-LPFPSSYP-MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLV  142 (325)
Q Consensus        65 ~~~-~~~~~~~~-~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vI  142 (325)
                      +.. ........ ....+.++.+.|.+.+ ..++  .+++++++.+++.++  +.|.|.+....    +..+ +++|.||
T Consensus        81 ~~~~~~~~~~~~~~~i~R~~~~~~L~~~~-~~gv--~v~~~~~v~~i~~~~--~~~~v~~~~~g----~~~~-i~a~~vV  150 (351)
T PRK11445         81 LANSLTRNYQRSYINIDRHKFDLWLKSLI-PASV--EVYHNSLCRKIWRED--DGYHVIFRADG----WEQH-ITARYLV  150 (351)
T ss_pred             ccccchhhcCCCcccccHHHHHHHHHHHH-hcCC--EEEcCCEEEEEEEcC--CEEEEEEecCC----cEEE-EEeCEEE
Confidence            100 00000101 1267888888888744 4454  459999999998765  56888764321    1147 8999999


Q ss_pred             EcccCCCC
Q 020533          143 VASGETTN  150 (325)
Q Consensus       143 iAtG~~~~  150 (325)
                      .|+|..|.
T Consensus       151 ~AdG~~S~  158 (351)
T PRK11445        151 GADGANSM  158 (351)
T ss_pred             ECCCCCcH
Confidence            99998764

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=99.16  E-value=1.3e-09  Score=106.13  Aligned_cols=143  Identities=20%  Similarity=0.217  Sum_probs=88.9

Q ss_pred             CCCCeEEEECCChHHHHHHHHHHhc-CCCeEEEecCCCCC--C----ccCC----------------C--CCCceEeecC
Q 020533            5 AAGVEVIMVGAGTSGLATAACLSLQ-SIPYVILERENCYA--S----IWKK----------------Y--SYDRLRLHLA   59 (325)
Q Consensus         5 ~~~~~v~IIGaG~~Gl~~a~~L~~~-g~~v~v~e~~~~~G--g----~w~~----------------~--~y~~~~~~~~   59 (325)
                      +.++||+||||||+||++|..|++. |++|+|+|+.+..-  |    .+..                .  ....+....+
T Consensus        30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~  109 (634)
T PRK08294         30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKP  109 (634)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcC
Confidence            3468999999999999999999995 99999999886321  1    0100                0  0011111111


Q ss_pred             C-----Ccc---CCCCCCCC-CCCC-CCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCC-CCcEEEEEeecC--
Q 020533           60 K-----QFC---QLPHLPFP-SSYP-MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEA-TNMWNVKASNLL--  126 (325)
Q Consensus        60 ~-----~~~---~~~~~~~~-~~~~-~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~-~~~~~v~~~~~~--  126 (325)
                      .     ...   .+...+.. ..++ ...++..+.+.|.+.+.+.+....+++++++++++.+++ ....+|++++.+  
T Consensus       110 ~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~  189 (634)
T PRK08294        110 DPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGE  189 (634)
T ss_pred             CCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCC
Confidence            0     000   00000000 0111 235677889999998887765445689999999987642 234677776531  


Q ss_pred             -CCCceeEEEEEeCeEEEcccCCCC
Q 020533          127 -SPGREIEEYYSGRFLVVASGETTN  150 (325)
Q Consensus       127 -~~~~~~~~~~~ad~vIiAtG~~~~  150 (325)
                       .+  +..+ ++||+||.|.|.+|.
T Consensus       190 ~~g--~~~t-v~A~~lVGaDGa~S~  211 (634)
T PRK08294        190 HEG--EEET-VRAKYVVGCDGARSR  211 (634)
T ss_pred             CCC--ceEE-EEeCEEEECCCCchH
Confidence             11  2367 999999999998774

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=99.15  E-value=3.6e-10  Score=105.83  Aligned_cols=136  Identities=17%  Similarity=0.278  Sum_probs=84.1

Q ss_pred             CeEEEECCChHHHHHHHHHHh----cCCCeEEEecCC--CCC--------C---------------------ccCCC---
Q 020533            8 VEVIMVGAGTSGLATAACLSL----QSIPYVILEREN--CYA--------S---------------------IWKKY---   49 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~----~g~~v~v~e~~~--~~G--------g---------------------~w~~~---   49 (325)
                      +||+||||||+|+++|..|++    .|++|+|+|+++  ..-        |                     .|..-   
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~   80 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD   80 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence            689999999999999999998    799999999943  211        1                     11100   


Q ss_pred             ---CCCceEeecCCC--ccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCC-CceeeeCeEEEEEEEc-----CCCCcE
Q 020533           50 ---SYDRLRLHLAKQ--FCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNI-GPSIRYQRSVESASYD-----EATNMW  118 (325)
Q Consensus        50 ---~y~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~yl~~~a~~~~l-~~~i~~~~~V~~i~~~-----~~~~~~  118 (325)
                         .+..+.......  ...++............++..+.+.|.+.+.+.+- ...++++++|++++..     +....+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v  160 (437)
T TIGR01989        81 RIQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWV  160 (437)
T ss_pred             cCCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCce
Confidence               011111111111  11111111000111124678888888888877641 2455999999999763     223456


Q ss_pred             EEEEeecCCCCceeEEEEEeCeEEEcccCCCCC
Q 020533          119 NVKASNLLSPGREIEEYYSGRFLVVASGETTNP  151 (325)
Q Consensus       119 ~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p  151 (325)
                      +|++.++       .+ +++|.||.|.|.+|.-
T Consensus       161 ~v~~~~g-------~~-i~a~llVgADG~~S~v  185 (437)
T TIGR01989       161 HITLSDG-------QV-LYTKLLIGADGSNSNV  185 (437)
T ss_pred             EEEEcCC-------CE-EEeeEEEEecCCCChh
Confidence            7776553       57 8999999999987744

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=99.15  E-value=8.6e-10  Score=103.21  Aligned_cols=138  Identities=12%  Similarity=0.122  Sum_probs=84.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC----CCccCCC--------------CCCceEeecCCCc-cCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY----ASIWKKY--------------SYDRLRLHLAKQF-CQLP   66 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~----Gg~w~~~--------------~y~~~~~~~~~~~-~~~~   66 (325)
                      ..+||+||||||+|+++|..|++.|++|+|+|++...    ||.....              ...++++..+... ..+.
T Consensus        38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~  117 (450)
T PLN00093         38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIG  117 (450)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEec
Confidence            3589999999999999999999999999999987531    2210000              0111222221110 0111


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcC-CCCcEEEEEeecC----CCCceeEEEEEeCeE
Q 020533           67 HLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDE-ATNMWNVKASNLL----SPGREIEEYYSGRFL  141 (325)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~-~~~~~~v~~~~~~----~~~~~~~~~~~ad~v  141 (325)
                      ....+..+-....+..+.++|.+.+.+.|...  +.+ ++.+++... ..+.+.|++.+..    ++  +..+ +.+|.|
T Consensus       118 ~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~--~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g--~~~~-v~a~~V  191 (450)
T PLN00093        118 KTLKPHEYIGMVRREVLDSFLRERAQSNGATL--ING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAG--TPKT-LEVDAV  191 (450)
T ss_pred             ccCCCCCeEEEecHHHHHHHHHHHHHHCCCEE--Eec-eEEEEEeccCCCCcEEEEEEeccccccCC--CccE-EEeCEE
Confidence            00001111112688999999999999988654  544 577776432 2355777765421    01  2257 899999


Q ss_pred             EEcccCCC
Q 020533          142 VVASGETT  149 (325)
Q Consensus       142 IiAtG~~~  149 (325)
                      |.|+|..|
T Consensus       192 IgADG~~S  199 (450)
T PLN00093        192 IGADGANS  199 (450)
T ss_pred             EEcCCcch
Confidence            99999765

>PLN02697 lycopene epsilon cyclase

Probab=99.14  E-value=1.6e-09  Score=102.66  Aligned_cols=130  Identities=17%  Similarity=0.210  Sum_probs=82.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC---CccCCCCCCceEe------ecCCCccCCCCCC-CCCCC-
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA---SIWKKYSYDRLRL------HLAKQFCQLPHLP-FPSSY-   74 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~G---g~w~~~~y~~~~~------~~~~~~~~~~~~~-~~~~~-   74 (325)
                      ..+||+||||||+|+++|..|++.|++|+++|+.....   |+|... ...+.+      ..+.....++... ..... 
T Consensus       107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~-l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~  185 (529)
T PLN02697        107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDE-FKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRA  185 (529)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhH-HHhcCcHHHHHhhcCCcEEEecCCceeeccCc
Confidence            35899999999999999999999999999999864433   455321 100000      0000000011000 00000 


Q ss_pred             CCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEE-EeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533           75 PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVK-ASNLLSPGREIEEYYSGRFLVVASGETT  149 (325)
Q Consensus        75 ~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~-~~~~~~~~~~~~~~~~ad~vIiAtG~~~  149 (325)
                      -....+..+.+.|.+.+.+.++.   .++++|+.+..++  +.+.+. ..++       .+ +.++.||+|+|..+
T Consensus       186 Yg~V~R~~L~~~Ll~~a~~~GV~---~~~~~V~~I~~~~--~~~~vv~~~dG-------~~-i~A~lVI~AdG~~S  248 (529)
T PLN02697        186 YGRVSRTLLHEELLRRCVESGVS---YLSSKVDRITEAS--DGLRLVACEDG-------RV-IPCRLATVASGAAS  248 (529)
T ss_pred             ccEEcHHHHHHHHHHHHHhcCCE---EEeeEEEEEEEcC--CcEEEEEEcCC-------cE-EECCEEEECCCcCh
Confidence            01367888999999988887754   4778899887654  445443 3332       56 89999999999876

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.14  E-value=6.6e-10  Score=102.03  Aligned_cols=131  Identities=15%  Similarity=0.247  Sum_probs=85.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC-------C----------------CccCC-----CCCCceEeecC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCY-------A----------------SIWKK-----YSYDRLRLHLA   59 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~-------G----------------g~w~~-----~~y~~~~~~~~   59 (325)
                      +||+|||||++|+++|..|++.|++|+|+|+.+..       +                |.|..     ..+..+....+
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~   81 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDN   81 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEEC
Confidence            68999999999999999999999999999986321       1                12211     01122222111


Q ss_pred             C--CccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEE
Q 020533           60 K--QFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS  137 (325)
Q Consensus        60 ~--~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~  137 (325)
                      .  ....+... ..........+.++.+.|.+.+.+.+. ..++++++++++..++  +.+.|.+.+        .+ +.
T Consensus        82 ~g~~~~~~~~~-~~~~~g~~v~r~~L~~~L~~~~~~~~~-v~~~~~~~v~~i~~~~--~~v~v~~~~--------~~-~~  148 (374)
T PRK06617         82 KASEILDLRND-ADAVLGYVVKNSDFKKILLSKITNNPL-ITLIDNNQYQEVISHN--DYSIIKFDD--------KQ-IK  148 (374)
T ss_pred             CCceEEEecCC-CCCCcEEEEEHHHHHHHHHHHHhcCCC-cEEECCCeEEEEEEcC--CeEEEEEcC--------CE-Ee
Confidence            1  11111110 000111235788999999998887752 3458899999997765  567777743        35 89


Q ss_pred             eCeEEEcccCCCCC
Q 020533          138 GRFLVVASGETTNP  151 (325)
Q Consensus       138 ad~vIiAtG~~~~p  151 (325)
                      +|.||.|+|.+|.-
T Consensus       149 adlvIgADG~~S~v  162 (374)
T PRK06617        149 CNLLIICDGANSKV  162 (374)
T ss_pred             eCEEEEeCCCCchh
Confidence            99999999987754

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=99.13  E-value=1.1e-09  Score=101.11  Aligned_cols=137  Identities=17%  Similarity=0.142  Sum_probs=81.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC---C----C--------------ccCC-----CCCCceEeecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY---A----S--------------IWKK-----YSYDRLRLHLAK   60 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~---G----g--------------~w~~-----~~y~~~~~~~~~   60 (325)
                      ++||+||||||+|+++|..|++.|++|+|+|+.+..   +    +              .|..     .....+.+....
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g   81 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDG   81 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECC
Confidence            478999999999999999999999999999998741   1    1              1100     011112211111


Q ss_pred             CccCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeC
Q 020533           61 QFCQLPHLPFPSS-YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGR  139 (325)
Q Consensus        61 ~~~~~~~~~~~~~-~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad  139 (325)
                      ....++....... .....++.++.+.|.+.+...+..  +++++++++++..+ .....|++....    +..+ +++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~--v~~~~~v~~i~~~~-~~~~~V~~~~~G----~~~~-i~ad  153 (392)
T PRK08243         82 RRHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGP--IRFEASDVALHDFD-SDRPYVTYEKDG----EEHR-LDCD  153 (392)
T ss_pred             EEEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCe--EEEeeeEEEEEecC-CCceEEEEEcCC----eEEE-EEeC
Confidence            1111111000000 001123556666676666666655  49999999887522 234456653211    2357 8999


Q ss_pred             eEEEcccCCCCC
Q 020533          140 FLVVASGETTNP  151 (325)
Q Consensus       140 ~vIiAtG~~~~p  151 (325)
                      .||.|.|.+|.-
T Consensus       154 ~vVgADG~~S~v  165 (392)
T PRK08243        154 FIAGCDGFHGVS  165 (392)
T ss_pred             EEEECCCCCCch
Confidence            999999987754

>PRK09126 hypothetical protein; Provisional

Probab=99.13  E-value=8.1e-10  Score=102.08  Aligned_cols=132  Identities=17%  Similarity=0.196  Sum_probs=79.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC--------CC---ccCC--------CCCC-----------ceEe
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY--------AS---IWKK--------YSYD-----------RLRL   56 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~--------Gg---~w~~--------~~y~-----------~~~~   56 (325)
                      ++||+||||||+|+++|..|+++|++|+|+||.+..        |.   .+..        ..++           ...+
T Consensus         3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~   82 (392)
T PRK09126          3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKV   82 (392)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEE
Confidence            479999999999999999999999999999998642        21   0100        0010           1111


Q ss_pred             ecCCCc--cCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHH-cCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCcee
Q 020533           57 HLAKQF--CQLPHLPF-PSSYPMFVSRAQFIEHLDHYVSH-FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREI  132 (325)
Q Consensus        57 ~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~yl~~~a~~-~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~  132 (325)
                      ......  ..++.... ........++..+.+.+.+.+.. .++  .++++++|++++.++  +.+.|++.++       
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~--~i~~~~~v~~~~~~~--~~~~v~~~~g-------  151 (392)
T PRK09126         83 LNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGI--ELLTGTRVTAVRTDD--DGAQVTLANG-------  151 (392)
T ss_pred             EcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCc--EEEcCCeEEEEEEcC--CeEEEEEcCC-------
Confidence            111000  01100000 00011113455666666555533 454  459999999998754  5677777553       


Q ss_pred             EEEEEeCeEEEcccCCCC
Q 020533          133 EEYYSGRFLVVASGETTN  150 (325)
Q Consensus       133 ~~~~~ad~vIiAtG~~~~  150 (325)
                      .+ +.+|.||.|+|.++.
T Consensus       152 ~~-~~a~~vI~AdG~~S~  168 (392)
T PRK09126        152 RR-LTARLLVAADSRFSA  168 (392)
T ss_pred             CE-EEeCEEEEeCCCCch
Confidence            46 899999999997654

>TIGR00275 flavoprotein, HI0933 family

Probab=99.12  E-value=6.9e-10  Score=102.59  Aligned_cols=126  Identities=22%  Similarity=0.360  Sum_probs=83.7

Q ss_pred             EEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecC-----CCc-cCCC-----------CCC----
Q 020533           11 IMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLA-----KQF-CQLP-----------HLP----   69 (325)
Q Consensus        11 ~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~-----~~~-~~~~-----------~~~----   69 (325)
                      +|||||++|+++|..|++.|.+|+|+|+++.+|+.+....-  -+++..     ..+ ..++           .+.    
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~--grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~   78 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGG--GRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDL   78 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCC--ceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHH
Confidence            69999999999999999999999999999988865432110  011100     000 0000           000    


Q ss_pred             ----------C--CCCCCCCC---CHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEE
Q 020533           70 ----------F--PSSYPMFV---SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEE  134 (325)
Q Consensus        70 ----------~--~~~~~~~~---~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~  134 (325)
                                +  ......|+   ...++.+.+.+.+++.++.  ++++++|++++.++  +.|.+++..        .+
T Consensus        79 ~~~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~--i~~~~~V~~i~~~~--~~~~v~~~~--------~~  146 (400)
T TIGR00275        79 IDFFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVE--ILTNSKVKSIKKDD--NGFGVETSG--------GE  146 (400)
T ss_pred             HHHHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCE--EEeCCEEEEEEecC--CeEEEEECC--------cE
Confidence                      0  00011222   3578888999999888865  49999999997654  567776632        46


Q ss_pred             EEEeCeEEEcccCCCCC
Q 020533          135 YYSGRFLVVASGETTNP  151 (325)
Q Consensus       135 ~~~ad~vIiAtG~~~~p  151 (325)
                       +.+|.||+|+|.++.|
T Consensus       147 -i~ad~VIlAtG~~s~p  162 (400)
T TIGR00275       147 -YEADKVILATGGLSYP  162 (400)
T ss_pred             -EEcCEEEECCCCcccC
Confidence             8999999999986654

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=99.12  E-value=4.5e-10  Score=103.38  Aligned_cols=130  Identities=19%  Similarity=0.212  Sum_probs=82.0

Q ss_pred             eEEEECCChHHHHHHHHHHhcC-CCeEEEecCCCCCC----------ccCC--------CCC----------CceEeecC
Q 020533            9 EVIMVGAGTSGLATAACLSLQS-IPYVILERENCYAS----------IWKK--------YSY----------DRLRLHLA   59 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g-~~v~v~e~~~~~Gg----------~w~~--------~~y----------~~~~~~~~   59 (325)
                      ||+||||||+|+++|..|+++| ++|+|+|+.+...-          .+..        ..+          ....+...
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~   80 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ   80 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence            7999999999999999999999 99999999764311          0100        000          01111000


Q ss_pred             CC--ccCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHc-CCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEE
Q 020533           60 KQ--FCQLPHLPFPSSYP-MFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY  135 (325)
Q Consensus        60 ~~--~~~~~~~~~~~~~~-~~~~~~~~~~yl~~~a~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~  135 (325)
                      ..  ...+....+..... ....+.++.+.|.+.+... ++.  ++++++|+++..++  +.|+|++.++       .+ 
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~--~~~~~~v~~i~~~~--~~~~v~~~~g-------~~-  148 (382)
T TIGR01984        81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQ--LYCPARYKEIIRNQ--DYVRVTLDNG-------QQ-  148 (382)
T ss_pred             CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcE--EEcCCeEEEEEEcC--CeEEEEECCC-------CE-
Confidence            00  00000000000000 1245778888898888774 644  48899999998765  5677877543       46 


Q ss_pred             EEeCeEEEcccCCCC
Q 020533          136 YSGRFLVVASGETTN  150 (325)
Q Consensus       136 ~~ad~vIiAtG~~~~  150 (325)
                      +.||.||.|+|.+|.
T Consensus       149 ~~ad~vV~AdG~~S~  163 (382)
T TIGR01984       149 LRAKLLIAADGANSK  163 (382)
T ss_pred             EEeeEEEEecCCChH
Confidence            899999999997763

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK07236 hypothetical protein; Provisional

Probab=99.10  E-value=1e-09  Score=101.21  Aligned_cols=136  Identities=14%  Similarity=0.145  Sum_probs=79.3

Q ss_pred             CCCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC----CC-c-cCCC---------CCCceEeecCCC---c
Q 020533            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY----AS-I-WKKY---------SYDRLRLHLAKQ---F   62 (325)
Q Consensus         1 M~~~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~----Gg-~-w~~~---------~y~~~~~~~~~~---~   62 (325)
                      |..+. ..+|+|||||++||++|..|++.|++|+|+|+.+..    |+ . ...+         ..+......+..   +
T Consensus         1 ~~~~~-~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~   79 (386)
T PRK07236          1 MTHMS-GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIY   79 (386)
T ss_pred             CCCCC-CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEE
Confidence            44433 479999999999999999999999999999998632    11 0 0000         000000000000   0


Q ss_pred             cCCCCCCCC-CCCC-CCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCe
Q 020533           63 CQLPHLPFP-SSYP-MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRF  140 (325)
Q Consensus        63 ~~~~~~~~~-~~~~-~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~  140 (325)
                      ......... ...+ .......+.+.|.+   .+. ...++++++|++++.++  +.++|++.++       .+ +.+|.
T Consensus        80 ~~~~g~~~~~~~~~~~~~~~~~l~~~L~~---~~~-~~~i~~~~~v~~i~~~~--~~v~v~~~~g-------~~-~~ad~  145 (386)
T PRK07236         80 LDRDGRVVQRRPMPQTQTSWNVLYRALRA---AFP-AERYHLGETLVGFEQDG--DRVTARFADG-------RR-ETADL  145 (386)
T ss_pred             EeCCCCEeeccCCCccccCHHHHHHHHHH---hCC-CcEEEcCCEEEEEEecC--CeEEEEECCC-------CE-EEeCE
Confidence            000000000 0000 12234455554443   232 23469999999998764  5688887764       56 89999


Q ss_pred             EEEcccCCCCC
Q 020533          141 LVVASGETTNP  151 (325)
Q Consensus       141 vIiAtG~~~~p  151 (325)
                      ||.|.|.+|.-
T Consensus       146 vIgADG~~S~v  156 (386)
T PRK07236        146 LVGADGGRSTV  156 (386)
T ss_pred             EEECCCCCchH
Confidence            99999987754

>PRK06996 hypothetical protein; Provisional

Probab=99.09  E-value=1.6e-09  Score=100.39  Aligned_cols=132  Identities=16%  Similarity=0.235  Sum_probs=85.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcC----CCeEEEecCCCCC---------------------CccCCCCCC--ceEeec
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQS----IPYVILERENCYA---------------------SIWKKYSYD--RLRLHL   58 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g----~~v~v~e~~~~~G---------------------g~w~~~~y~--~~~~~~   58 (325)
                      ..+||+||||||+|+++|..|++.|    ++|+|+|+.+...                     |.|....++  ......
T Consensus        10 ~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~   89 (398)
T PRK06996         10 PDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQ   89 (398)
T ss_pred             CCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEec
Confidence            4579999999999999999999987    4699999975321                     122221111  111111


Q ss_pred             CCC----ccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEE
Q 020533           59 AKQ----FCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEE  134 (325)
Q Consensus        59 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~  134 (325)
                      ...    ......+..+. .....++.++.+.|.+.+...++  .+++++++++++.+.  ..+++++.+++++    .+
T Consensus        90 ~~~~g~~~~~~~~~~~~~-~g~~v~r~~l~~~L~~~~~~~g~--~~~~~~~v~~~~~~~--~~v~v~~~~~~g~----~~  160 (398)
T PRK06996         90 RGHFGRTLIDRDDHDVPA-LGYVVRYGSLVAALARAVRGTPV--RWLTSTTAHAPAQDA--DGVTLALGTPQGA----RT  160 (398)
T ss_pred             CCCCceEEecccccCCCc-CEEEEEhHHHHHHHHHHHHhCCC--EEEcCCeeeeeeecC--CeEEEEECCCCcc----eE
Confidence            010    01111111111 01125678899999999888875  458999999987654  6688877654332    57


Q ss_pred             EEEeCeEEEcccC
Q 020533          135 YYSGRFLVVASGE  147 (325)
Q Consensus       135 ~~~ad~vIiAtG~  147 (325)
                       +++|+||.|+|.
T Consensus       161 -i~a~lvIgADG~  172 (398)
T PRK06996        161 -LRARIAVQAEGG  172 (398)
T ss_pred             -EeeeEEEECCCC
Confidence             899999999995

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=99.07  E-value=2.4e-10  Score=93.60  Aligned_cols=135  Identities=17%  Similarity=0.253  Sum_probs=76.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC-ccCC-CCCCceEeecCCCcc----CCCCCCCCCCCCCCCCH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS-IWKK-YSYDRLRLHLAKQFC----QLPHLPFPSSYPMFVSR   80 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg-~w~~-~~y~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~   80 (325)
                      .+||+||||||+||++|+.|++.|++|++||++..+|| .|.. ..++.+..+.+...+    ..+..++.+. -...+.
T Consensus        17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g-~~v~d~   95 (230)
T PF01946_consen   17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDG-YYVADS   95 (230)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSE-EEES-H
T ss_pred             cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCe-EEEEcH
Confidence            57999999999999999999999999999999988875 7865 356666666543321    1111111111 112466


Q ss_pred             HHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCc-------EEEEEeecCCCCceeEEEEEeCeEEEcccCC
Q 020533           81 AQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNM-------WNVKASNLLSPGREIEEYYSGRFLVVASGET  148 (325)
Q Consensus        81 ~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~-------~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~  148 (325)
                      .++...|...+-+.|...  +-.+.|+.+-..++ ++       |+.....+.+-  .+.. ++++.||-|||+-
T Consensus        96 ~~~~s~L~s~a~~aGaki--fn~~~vEDvi~r~~-~rV~GvViNWt~V~~~glHv--DPl~-i~ak~ViDaTGHd  164 (230)
T PF01946_consen   96 VEFTSTLASKAIDAGAKI--FNLTSVEDVIVRED-DRVAGVVINWTPVEMAGLHV--DPLT-IRAKVVIDATGHD  164 (230)
T ss_dssp             HHHHHHHHHHHHTTTEEE--EETEEEEEEEEECS-CEEEEEEEEEHHHHTT--T---B-EE-EEESEEEE---SS
T ss_pred             HHHHHHHHHHHhcCCCEE--EeeeeeeeeEEEcC-CeEEEEEEEehHHhHhhcCC--Ccce-EEEeEEEeCCCCc
Confidence            778888887777777543  66677887755442 22       21111111111  2367 9999999999963

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.07  E-value=1.6e-09  Score=100.16  Aligned_cols=132  Identities=17%  Similarity=0.222  Sum_probs=79.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhc---CCCeEEEecCCCC-----C------CccCC--------CCCC----------ce
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQ---SIPYVILERENCY-----A------SIWKK--------YSYD----------RL   54 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~---g~~v~v~e~~~~~-----G------g~w~~--------~~y~----------~~   54 (325)
                      .+||+||||||+|+++|..|+++   |++|+|+|+....     +      +.+..        ..++          .+
T Consensus         3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~   82 (395)
T PRK05732          3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHI   82 (395)
T ss_pred             cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEE
Confidence            47999999999999999999998   9999999995211     1      01100        0011          11


Q ss_pred             EeecCCCcc--CCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHc-CCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCc
Q 020533           55 RLHLAKQFC--QLPHLPFPSSY-PMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR  130 (325)
Q Consensus        55 ~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~yl~~~a~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~  130 (325)
                      .........  .+......... .....+.++.+.|.+.+... ++  .++++++|+++..++  +.|.|++.++     
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~--~~~~~~~v~~i~~~~--~~~~v~~~~g-----  153 (395)
T PRK05732         83 HVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGV--TLHCPARVANVERTQ--GSVRVTLDDG-----  153 (395)
T ss_pred             EEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCc--EEEcCCEEEEEEEcC--CeEEEEECCC-----
Confidence            110000000  00000000000 01234566777777766553 43  458899999987654  6688877653     


Q ss_pred             eeEEEEEeCeEEEcccCCCC
Q 020533          131 EIEEYYSGRFLVVASGETTN  150 (325)
Q Consensus       131 ~~~~~~~ad~vIiAtG~~~~  150 (325)
                        .. +.+|.||.|+|.++.
T Consensus       154 --~~-~~a~~vI~AdG~~S~  170 (395)
T PRK05732        154 --ET-LTGRLLVAADGSHSA  170 (395)
T ss_pred             --CE-EEeCEEEEecCCChh
Confidence              46 899999999997653

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=99.07  E-value=2.1e-09  Score=99.19  Aligned_cols=136  Identities=15%  Similarity=0.104  Sum_probs=79.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC------C--CccCC--------C----------CCCceEeecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY------A--SIWKK--------Y----------SYDRLRLHLAK   60 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~------G--g~w~~--------~----------~y~~~~~~~~~   60 (325)
                      .+||+||||||+|+++|..|++.|++|+|+|+.+..      +  ..+..        .          .+..+......
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~   81 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDG   81 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCC
Confidence            379999999999999999999999999999998741      1  11110        0          01111111111


Q ss_pred             CccCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEe-ecCCCCceeEEEEEe
Q 020533           61 QFCQLPHLPFPSSYPM-FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKAS-NLLSPGREIEEYYSG  138 (325)
Q Consensus        61 ~~~~~~~~~~~~~~~~-~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~-~~~~~~~~~~~~~~a  138 (325)
                      ....++.......... ...+..+...|.+.+...+..  ++++++++.+...+ .....|++. ++     +..+ +++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~--~~~~~~~v~~~~~~-~~~~~V~~~~~g-----~~~~-i~a  152 (390)
T TIGR02360        82 QRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLT--TVYDADDVRLHDLA-GDRPYVTFERDG-----ERHR-LDC  152 (390)
T ss_pred             EEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCe--EEEeeeeEEEEecC-CCccEEEEEECC-----eEEE-EEe
Confidence            1111111000000000 123456666677767666654  48888877765422 234556664 33     2247 899


Q ss_pred             CeEEEcccCCCCC
Q 020533          139 RFLVVASGETTNP  151 (325)
Q Consensus       139 d~vIiAtG~~~~p  151 (325)
                      |.||.|.|.+|.-
T Consensus       153 dlvIGADG~~S~V  165 (390)
T TIGR02360       153 DFIAGCDGFHGVS  165 (390)
T ss_pred             CEEEECCCCchhh
Confidence            9999999987743

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=99.07  E-value=2.1e-09  Score=99.78  Aligned_cols=133  Identities=17%  Similarity=0.241  Sum_probs=80.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecC-CC--CC---------------------CccCCC------CCCceEe
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERE-NC--YA---------------------SIWKKY------SYDRLRL   56 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~-~~--~G---------------------g~w~~~------~y~~~~~   56 (325)
                      .+||+||||||+|+++|..|++.|++|+|+|+. +.  ++                     |.|..-      .+..+..
T Consensus         4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~   83 (405)
T PRK08850          4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV   83 (405)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence            479999999999999999999999999999986 21  11                     112110      0111111


Q ss_pred             ecCCCc--cCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeE
Q 020533           57 HLAKQF--CQLPHLPFPS-SYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIE  133 (325)
Q Consensus        57 ~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~  133 (325)
                      ......  ..+....... .+.....+..+.+.|.+.+.... ...++++++|++++.++  +.+.|++.++       .
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~-~v~v~~~~~v~~i~~~~--~~~~v~~~~g-------~  153 (405)
T PRK08850         84 WEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQD-NVTLLMPARCQSIAVGE--SEAWLTLDNG-------Q  153 (405)
T ss_pred             EeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCC-CeEEEcCCeeEEEEeeC--CeEEEEECCC-------C
Confidence            111100  0011000000 00111335567777777666542 13458999999998765  5577777653       5


Q ss_pred             EEEEeCeEEEcccCCCC
Q 020533          134 EYYSGRFLVVASGETTN  150 (325)
Q Consensus       134 ~~~~ad~vIiAtG~~~~  150 (325)
                      + +.+|.||.|+|.+|.
T Consensus       154 ~-~~a~lvIgADG~~S~  169 (405)
T PRK08850        154 A-LTAKLVVGADGANSW  169 (405)
T ss_pred             E-EEeCEEEEeCCCCCh
Confidence            6 899999999997664

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=99.06  E-value=2e-10  Score=78.03  Aligned_cols=51  Identities=24%  Similarity=0.436  Sum_probs=44.0

Q ss_pred             EECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCc
Q 020533           12 MVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQF   62 (325)
Q Consensus        12 IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~   62 (325)
                      |||||++||++|..|++.|++|+|+|+++.+||.+....+++..++.....
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~d~g~~~   51 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPGYRFDLGAHY   51 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETTEEEETSS-S
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECCEEEeeccEE
Confidence            899999999999999999999999999999999998877777777665443

...

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.06  E-value=3.3e-09  Score=97.72  Aligned_cols=133  Identities=11%  Similarity=0.141  Sum_probs=79.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC--C--CCc--------cCC--------CCCCce-----------Ee
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC--Y--ASI--------WKK--------YSYDRL-----------RL   56 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~--~--Gg~--------w~~--------~~y~~~-----------~~   56 (325)
                      +||+||||||+|+++|..|++.|++|+|||+.+.  .  .|.        +..        ..++.+           ..
T Consensus         4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~~   83 (384)
T PRK08849          4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLET   83 (384)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEEE
Confidence            7999999999999999999999999999998751  1  110        100        011111           10


Q ss_pred             e-cCCCccCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEE
Q 020533           57 H-LAKQFCQLPHLPFPSS-YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEE  134 (325)
Q Consensus        57 ~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~  134 (325)
                      . .......+........ ......+..+...|.+.+...+ ...++++++|++++.++  +.++|+++++       .+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~-~i~i~~~~~v~~~~~~~--~~~~v~~~~g-------~~  153 (384)
T PRK08849         84 WEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYP-NLTLMCPEKLADLEFSA--EGNRVTLESG-------AE  153 (384)
T ss_pred             EeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCC-CeEEECCCceeEEEEcC--CeEEEEECCC-------CE
Confidence            0 0000000110000000 0111234456666666555543 24458999999998765  5577887654       56


Q ss_pred             EEEeCeEEEcccCCCCC
Q 020533          135 YYSGRFLVVASGETTNP  151 (325)
Q Consensus       135 ~~~ad~vIiAtG~~~~p  151 (325)
                       +++|.||.|+|.+|.-
T Consensus       154 -~~~~lvIgADG~~S~v  169 (384)
T PRK08849        154 -IEAKWVIGADGANSQV  169 (384)
T ss_pred             -EEeeEEEEecCCCchh
Confidence             8999999999987653

>PRK06475 salicylate hydroxylase; Provisional

Probab=99.06  E-value=2.8e-09  Score=98.75  Aligned_cols=135  Identities=17%  Similarity=0.148  Sum_probs=83.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC---C----------------ccCC---CCCC--ceEeecCCCc-
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA---S----------------IWKK---YSYD--RLRLHLAKQF-   62 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~G---g----------------~w~~---~~y~--~~~~~~~~~~-   62 (325)
                      .+|+|||||++||++|..|++.|++|+|+|+.+.+.   .                .|..   ..+.  .+........ 
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~   82 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR   82 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence            579999999999999999999999999999987532   1                1100   0000  0111000000 


Q ss_pred             --cCCCCCCCCC--CCCC--CCCHHHHHHHHHHHHHHc-CCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEE
Q 020533           63 --CQLPHLPFPS--SYPM--FVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY  135 (325)
Q Consensus        63 --~~~~~~~~~~--~~~~--~~~~~~~~~yl~~~a~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~  135 (325)
                        ..........  ....  ...+.++.+.|.+.+.+. ++  .++++++|++++.++  +.+++++.+..++    .+ 
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i--~v~~~~~v~~~~~~~--~~v~v~~~~~~~~----~~-  153 (400)
T PRK06475         83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGI--EIKLGAEMTSQRQTG--NSITATIIRTNSV----ET-  153 (400)
T ss_pred             eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCc--EEEECCEEEEEecCC--CceEEEEEeCCCC----cE-
Confidence              0000000000  0011  246788888888877654 43  459999999997654  5677777544332    56 


Q ss_pred             EEeCeEEEcccCCCCC
Q 020533          136 YSGRFLVVASGETTNP  151 (325)
Q Consensus       136 ~~ad~vIiAtG~~~~p  151 (325)
                      +.+|.||.|.|.+|.-
T Consensus       154 ~~adlvIgADG~~S~v  169 (400)
T PRK06475        154 VSAAYLIACDGVWSML  169 (400)
T ss_pred             EecCEEEECCCccHhH
Confidence            8999999999988743

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=99.06  E-value=2.9e-09  Score=99.11  Aligned_cols=128  Identities=16%  Similarity=0.188  Sum_probs=79.3

Q ss_pred             eEEEECCChHHHHHHHHHHhcC-CCeEEEecCCCCCCc------cCC--------CCCC--------------ceEeec-
Q 020533            9 EVIMVGAGTSGLATAACLSLQS-IPYVILERENCYASI------WKK--------YSYD--------------RLRLHL-   58 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g-~~v~v~e~~~~~Gg~------w~~--------~~y~--------------~~~~~~-   58 (325)
                      +|+|||||++||++|..|+++| ++|+||||.+.++..      +..        ...+              ...... 
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~   81 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR   81 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence            6999999999999999999998 599999998865421      110        0000              000000 


Q ss_pred             CCCccCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEE
Q 020533           59 AKQFCQLPHLPFPSSYP-MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS  137 (325)
Q Consensus        59 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~  137 (325)
                      ......+.......... ....+.++.+.|.+.+..    ..++++++|++++.++  +.|+|++.++       .+ +.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~----~~v~~~~~v~~i~~~~--~~~~v~~~~g-------~~-~~  147 (414)
T TIGR03219        82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPE----GIASFGKRATQIEEQA--EEVQVLFTDG-------TE-YR  147 (414)
T ss_pred             ecCccceeeeeccccCCcccCCHHHHHHHHHHhCCC----ceEEcCCEEEEEEecC--CcEEEEEcCC-------CE-EE
Confidence            00000000000000111 124567777777665532    2358999999998754  5688888764       46 88


Q ss_pred             eCeEEEcccCCCC
Q 020533          138 GRFLVVASGETTN  150 (325)
Q Consensus       138 ad~vIiAtG~~~~  150 (325)
                      +|.||.|+|.+|.
T Consensus       148 ad~vVgADG~~S~  160 (414)
T TIGR03219       148 CDLLIGADGIKSA  160 (414)
T ss_pred             eeEEEECCCccHH
Confidence            9999999998764

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=99.05  E-value=1.4e-09  Score=100.78  Aligned_cols=168  Identities=23%  Similarity=0.270  Sum_probs=102.8

Q ss_pred             EEEECCChHHHHHHHHHHhc--CCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCC-CCCHHHHHHH
Q 020533           10 VIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPM-FVSRAQFIEH   86 (325)
Q Consensus        10 v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~y   86 (325)
                      ++|||+|++|+.+|..|.+.  +.+++++.+......       ..+              +.+..... .....++...
T Consensus         1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~-------~~~--------------~~~~~~~~~~~~~~~~~~~   59 (415)
T COG0446           1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSY-------YRC--------------PLSLYVGGGIASLEDLRYP   59 (415)
T ss_pred             CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCC-------CCC--------------ccchHHhcccCCHHHhccc
Confidence            58999999999999998885  457888877764321       000              00000000 0011111111


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA  166 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~~  166 (325)
                      .. .....++..  +.+++|.+++...    -.|.+.++        + +.+|++++|||  ..|..++  +  .+    
T Consensus        60 ~~-~~~~~~i~~--~~~~~v~~id~~~----~~v~~~~g--------~-~~yd~LvlatG--a~~~~~~--~--~~----  113 (415)
T COG0446          60 PR-FNRATGIDV--RTGTEVTSIDPEN----KVVLLDDG--------E-IEYDYLVLATG--ARPRPPP--I--SD----  113 (415)
T ss_pred             ch-hHHhhCCEE--eeCCEEEEecCCC----CEEEECCC--------c-ccccEEEEcCC--CcccCCC--c--cc----
Confidence            11 113445444  8888999887654    34555553        4 78999999999  5666554  1  11    


Q ss_pred             CCCccEEecCCCCCCCCC-----CCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhh
Q 020533          167 TGTGEVIHSTQYKNGKPY-----GGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREM  227 (325)
Q Consensus       167 ~~~g~~~~~~~~~~~~~~-----~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~  227 (325)
                        .........+.+...+     ..++++|||+|..|+++|..+.+.|.+|+++.+.+ .++++..
T Consensus       114 --~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~-~~~~~~~  176 (415)
T COG0446         114 --WEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAAD-RLGGQLL  176 (415)
T ss_pred             --cCceEEECCHHHHHHHHHHHhccCeEEEECCcHHHHHHHHHHHHcCCeEEEEEccc-ccchhhh
Confidence              1112222222211111     14899999999999999999999999999999999 5666544

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.04  E-value=8.4e-10  Score=100.16  Aligned_cols=60  Identities=20%  Similarity=0.224  Sum_probs=47.3

Q ss_pred             CCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEE-EEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533           78 VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWN-VKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (325)
Q Consensus        78 ~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~-v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~  150 (325)
                      ....++.+++.+.+++.|...  +.+++|++++.++  +.|+ |.+.+        .. +.+|.||+|+|.++.
T Consensus       144 i~~~~l~~~l~~~~~~~Gv~i--~~~~~V~~i~~~~--~~v~gv~~~~--------g~-i~ad~vV~a~G~~s~  204 (358)
T PF01266_consen  144 IDPRRLIQALAAEAQRAGVEI--RTGTEVTSIDVDG--GRVTGVRTSD--------GE-IRADRVVLAAGAWSP  204 (358)
T ss_dssp             EEHHHHHHHHHHHHHHTT-EE--EESEEEEEEEEET--TEEEEEEETT--------EE-EEECEEEE--GGGHH
T ss_pred             ccccchhhhhHHHHHHhhhhc--cccccccchhhcc--cccccccccc--------cc-cccceeEecccccce
Confidence            356889999999999998555  9999999999876  7787 88776        56 899999999997653

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=99.02  E-value=1e-08  Score=96.22  Aligned_cols=136  Identities=18%  Similarity=0.151  Sum_probs=84.3

Q ss_pred             eEEEECCChHHHHHHHHHHhcC-CCeEEEecCCCCCCccC--------CCC-------CC-c-------------eEee-
Q 020533            9 EVIMVGAGTSGLATAACLSLQS-IPYVILERENCYASIWK--------KYS-------YD-R-------------LRLH-   57 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g-~~v~v~e~~~~~Gg~w~--------~~~-------y~-~-------------~~~~-   57 (325)
                      ||+|||+|.+|+++|..++++| .+|+|+||.+..||.-.        ...       .+ .             ...+ 
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   80 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP   80 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence            7999999999999999999999 99999999987765321        110       00 0             0000 


Q ss_pred             --------cCC---Ccc--CCCC----------CCCCCC-C--CCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEE
Q 020533           58 --------LAK---QFC--QLPH----------LPFPSS-Y--PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASY  111 (325)
Q Consensus        58 --------~~~---~~~--~~~~----------~~~~~~-~--~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~  111 (325)
                              ...   .++  .+..          ...+.. .  .......++.+.|.+.+++.++..  +++++|+++..
T Consensus        81 ~l~~~~~~~~~~~i~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv~i--~~~~~v~~l~~  158 (439)
T TIGR01813        81 ELVRILAEESADAVDWLQDGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGIDT--RLNSKVEDLIQ  158 (439)
T ss_pred             HHHHHHHhccHHHHHHHHhCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCCEE--EeCCEeeEeEE
Confidence                    000   000  0000          000000 0  011345678889999999988654  99999999988


Q ss_pred             cCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533          112 DEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (325)
Q Consensus       112 ~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~  150 (325)
                      +++...+.|...+..+   +... +.++.||+|+|.++.
T Consensus       159 ~~~g~v~Gv~~~~~~g---~~~~-~~a~~VVlAtGg~~~  193 (439)
T TIGR01813       159 DDQGTVVGVVVKGKGK---GIYI-KAAKAVVLATGGFGS  193 (439)
T ss_pred             CCCCcEEEEEEEeCCC---eEEE-EecceEEEecCCCCC
Confidence            6533334455543221   2245 789999999997765

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK05868 hypothetical protein; Validated

Probab=99.00  E-value=9.9e-09  Score=94.12  Aligned_cols=132  Identities=15%  Similarity=0.108  Sum_probs=78.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC--c-c--CCC-------------------CCCceEeecCCC--
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS--I-W--KKY-------------------SYDRLRLHLAKQ--   61 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg--~-w--~~~-------------------~y~~~~~~~~~~--   61 (325)
                      .||+|||||++|+++|..|++.|++|+|+|+.+....  . .  ..+                   .+.......+..  
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~   81 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE   81 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence            4899999999999999999999999999999875431  0 0  000                   111111111110  


Q ss_pred             ccCCCC-CCCCCCC--CC-CCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEE
Q 020533           62 FCQLPH-LPFPSSY--PM-FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS  137 (325)
Q Consensus        62 ~~~~~~-~~~~~~~--~~-~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~  137 (325)
                      ...... .+.....  +. ...+.++.+.+.+.+ ..+  ..++++++|++++.++  +..+|++.++       .+ ++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~-~~~--v~i~~~~~v~~i~~~~--~~v~v~~~dg-------~~-~~  148 (372)
T PRK05868         82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGAT-QPS--VEYLFDDSISTLQDDG--DSVRVTFERA-------AA-RE  148 (372)
T ss_pred             EeecccccccCCCCCCceEEEEHHHHHHHHHHhc-cCC--cEEEeCCEEEEEEecC--CeEEEEECCC-------Ce-EE
Confidence            000000 0000000  00 112455555544322 223  4469999999997653  5677777664       46 78


Q ss_pred             eCeEEEcccCCCCCC
Q 020533          138 GRFLVVASGETTNPF  152 (325)
Q Consensus       138 ad~vIiAtG~~~~p~  152 (325)
                      +|.||.|.|.+|.-+
T Consensus       149 adlvIgADG~~S~vR  163 (372)
T PRK05868        149 FDLVIGADGLHSNVR  163 (372)
T ss_pred             eCEEEECCCCCchHH
Confidence            999999999877543

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.97  E-value=1.7e-08  Score=96.22  Aligned_cols=64  Identities=17%  Similarity=0.138  Sum_probs=47.2

Q ss_pred             CHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533           79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (325)
Q Consensus        79 ~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~  150 (325)
                      ....+...+...+.+.|...  +.+++|+++..++  +.|.|++.+.. +  +..+ ++++.||+|+|.++.
T Consensus       153 d~~rl~~~l~~~a~~~Ga~i--~~~~~V~~i~~~~--~~~~v~~~~~~-g--~~~~-i~a~~VVnAaG~wa~  216 (502)
T PRK13369        153 DDARLVVLNALDAAERGATI--LTRTRCVSARREG--GLWRVETRDAD-G--ETRT-VRARALVNAAGPWVT  216 (502)
T ss_pred             cHHHHHHHHHHHHHHCCCEE--ecCcEEEEEEEcC--CEEEEEEEeCC-C--CEEE-EEecEEEECCCccHH
Confidence            34555566667778888654  8889999998764  56888877654 2  3367 899999999998753

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.97  E-value=1e-08  Score=72.24  Aligned_cols=79  Identities=16%  Similarity=0.242  Sum_probs=64.8

Q ss_pred             eEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHHHH
Q 020533            9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHLD   88 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~   88 (325)
                      +|+|||||+.|+.+|..|.+.|.+|+++++++.+..                                 .-.+++.+++.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~---------------------------------~~~~~~~~~~~   47 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLP---------------------------------GFDPDAAKILE   47 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSST---------------------------------TSSHHHHHHHH
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhh---------------------------------hcCHHHHHHHH
Confidence            589999999999999999999999999999986431                                 11246788888


Q ss_pred             HHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEee
Q 020533           89 HYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASN  124 (325)
Q Consensus        89 ~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~  124 (325)
                      +..++.++..  ++++.+.+++.+++ + ++|++++
T Consensus        48 ~~l~~~gV~v--~~~~~v~~i~~~~~-~-~~V~~~~   79 (80)
T PF00070_consen   48 EYLRKRGVEV--HTNTKVKEIEKDGD-G-VEVTLED   79 (80)
T ss_dssp             HHHHHTTEEE--EESEEEEEEEEETT-S-EEEEEET
T ss_pred             HHHHHCCCEE--EeCCEEEEEEEeCC-E-EEEEEec
Confidence            8888888655  99999999998762 3 6677765

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=98.96  E-value=1.7e-08  Score=96.21  Aligned_cols=63  Identities=17%  Similarity=0.152  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533           80 RAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (325)
Q Consensus        80 ~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~  149 (325)
                      ...+...+...+.+.|...  +.+++|+++..++  +.|.|++.+..++  +..+ +.++.||+|+|.++
T Consensus       154 ~~rl~~~l~~~A~~~Ga~i--~~~~~V~~i~~~~--~~~~v~~~~~~~g--~~~~-i~a~~VVnAaG~wa  216 (508)
T PRK12266        154 DARLVVLNARDAAERGAEI--LTRTRVVSARREN--GLWHVTLEDTATG--KRYT-VRARALVNAAGPWV  216 (508)
T ss_pred             HHHHHHHHHHHHHHcCCEE--EcCcEEEEEEEeC--CEEEEEEEEcCCC--CEEE-EEcCEEEECCCccH
Confidence            3445455566677788654  8889999997754  5688887763322  2257 89999999999875

>PLN02661 Putative thiazole synthesis

Probab=98.96  E-value=4.4e-09  Score=93.61  Aligned_cols=138  Identities=18%  Similarity=0.287  Sum_probs=77.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhc-CCCeEEEecCCCCCC-ccCCCCC-CceEeecCC-CccCCCCCCCC--CCCCCCCCH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQ-SIPYVILERENCYAS-IWKKYSY-DRLRLHLAK-QFCQLPHLPFP--SSYPMFVSR   80 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~-g~~v~v~e~~~~~Gg-~w~~~~y-~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~   80 (325)
                      .+||+|||||++|+++|+.|++. |++|+|+|++..+|| .|....+ ....+..+. .+..--..++.  +.+......
T Consensus        92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~ha  171 (357)
T PLN02661         92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKHA  171 (357)
T ss_pred             cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecch
Confidence            57999999999999999999986 899999999988765 6654321 111111100 00000011111  111111133


Q ss_pred             HHHHHHHHHHHHH-cCCCceeeeCeEEEEEEEcCCCCc------EEEEEeecCCCC-ceeEEEEEeCeEEEcccCC
Q 020533           81 AQFIEHLDHYVSH-FNIGPSIRYQRSVESASYDEATNM------WNVKASNLLSPG-REIEEYYSGRFLVVASGET  148 (325)
Q Consensus        81 ~~~~~yl~~~a~~-~~l~~~i~~~~~V~~i~~~~~~~~------~~v~~~~~~~~~-~~~~~~~~ad~vIiAtG~~  148 (325)
                      .++...|.+.+.+ .++  .++.++.+.++..++ +..      |.....+..++. .+... +.++.||+|||+.
T Consensus       172 ~e~~stLi~ka~~~~gV--kI~~~t~V~DLI~~~-grVaGVVvnw~~v~~~~~~~s~~dp~~-I~AkaVVlATGh~  243 (357)
T PLN02661        172 ALFTSTIMSKLLARPNV--KLFNAVAAEDLIVKG-DRVGGVVTNWALVAQNHDTQSCMDPNV-MEAKVVVSSCGHD  243 (357)
T ss_pred             HHHHHHHHHHHHhcCCC--EEEeCeEeeeEEecC-CEEEEEEeecchhhhccCCCCccceeE-EECCEEEEcCCCC
Confidence            4555555554443 454  448888888887654 222      322222221100 02246 8999999999954

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.96  E-value=3.5e-10  Score=105.49  Aligned_cols=131  Identities=15%  Similarity=0.197  Sum_probs=35.4

Q ss_pred             eEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCC---CceEee----------cCCCccCCCCCCCCC--C
Q 020533            9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSY---DRLRLH----------LAKQFCQLPHLPFPS--S   73 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y---~~~~~~----------~~~~~~~~~~~~~~~--~   73 (325)
                      ||+|||||++|++||..+++.|.+|+|+|+.+.+||......-   ......          ....+......+.+.  .
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~   80 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG   80 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence            7999999999999999999999999999999999997654321   111100          000000000000000  0


Q ss_pred             C--CCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533           74 Y--PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        74 ~--~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                      +  ........+...+.+.+.+.++..  ++++.|.++..++ ..-+.|++.+..+.    .+ +.|+.+|-|||-
T Consensus        81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v--~~~t~v~~v~~~~-~~i~~V~~~~~~g~----~~-i~A~~~IDaTG~  148 (428)
T PF12831_consen   81 WVSNVPFDPEVFKAVLDEMLAEAGVEV--LLGTRVVDVIRDG-GRITGVIVETKSGR----KE-IRAKVFIDATGD  148 (428)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccc--ccccccccccccc-cccccccccccccc----cc-cccccccccccc
Confidence            0  123445566677788887788776  9999999998864 33455666543321    67 999999999994

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.95  E-value=3.7e-08  Score=93.89  Aligned_cols=39  Identities=26%  Similarity=0.383  Sum_probs=36.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg   44 (325)
                      ..+||+|||+|.+|+++|..+++.|.+|+|+||.+..||
T Consensus        60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG   98 (506)
T PRK06481         60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGG   98 (506)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Confidence            367999999999999999999999999999999988776

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=98.95  E-value=9.5e-09  Score=93.97  Aligned_cols=132  Identities=16%  Similarity=0.203  Sum_probs=78.4

Q ss_pred             eEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCCCC--ccCCCCCCc-----------eEeecCCCccCCCCCC--CC
Q 020533            9 EVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYAS--IWKKYSYDR-----------LRLHLAKQFCQLPHLP--FP   71 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~~~Gg--~w~~~~y~~-----------~~~~~~~~~~~~~~~~--~~   71 (325)
                      ||+|||||++|+++|..|.+.  |++|+++|+.+..+|  +|.....+-           +...-+.....++...  +.
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~   80 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK   80 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence            799999999999999999987  999999999988776  443211100           0000000000011000  00


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCC
Q 020533           72 SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNP  151 (325)
Q Consensus        72 ~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p  151 (325)
                      .. .....+.++.+++.+.+.   ..  ++++++|.+++.    +.  |++.++       .+ +.++.||.|.|..+.+
T Consensus        81 ~~-Y~~I~r~~f~~~l~~~l~---~~--i~~~~~V~~v~~----~~--v~l~dg-------~~-~~A~~VI~A~G~~s~~  140 (370)
T TIGR01789        81 TA-YRSMTSTRFHEGLLQAFP---EG--VILGRKAVGLDA----DG--VDLAPG-------TR-INARSVIDCRGFKPSA  140 (370)
T ss_pred             CC-ceEEEHHHHHHHHHHhhc---cc--EEecCEEEEEeC----CE--EEECCC-------CE-EEeeEEEECCCCCCCc
Confidence            00 123456777787765443   22  578889998832    23  444433       57 8999999999965432


Q ss_pred             CCCCCCCcccc
Q 020533          152 FTPDIRGLCSF  162 (325)
Q Consensus       152 ~~p~~~g~~~~  162 (325)
                      .  ...|...|
T Consensus       141 ~--~~~~~Q~f  149 (370)
T TIGR01789       141 H--LKGGFQVF  149 (370)
T ss_pred             c--ccceeeEE
Confidence            2  22466666

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=98.94  E-value=1e-08  Score=94.14  Aligned_cols=64  Identities=16%  Similarity=0.188  Sum_probs=45.6

Q ss_pred             CCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533           78 VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (325)
Q Consensus        78 ~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p  154 (325)
                      .....+...+.+.+.+.+...  +++++|+++..++  +.|.|.+.+        .. +.+|.||+|+|.++....+
T Consensus       146 v~p~~~~~~~~~~~~~~gv~i--~~~~~v~~i~~~~--~~~~v~~~~--------g~-~~a~~vV~A~G~~~~~l~~  209 (376)
T PRK11259        146 LRPELAIKAHLRLAREAGAEL--LFNEPVTAIEADG--DGVTVTTAD--------GT-YEAKKLVVSAGAWVKDLLP  209 (376)
T ss_pred             EcHHHHHHHHHHHHHHCCCEE--ECCCEEEEEEeeC--CeEEEEeCC--------CE-EEeeEEEEecCcchhhhcc
Confidence            344566666666677777554  8899999998754  567777654        35 8899999999987554433

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=98.94  E-value=1e-08  Score=94.31  Aligned_cols=59  Identities=20%  Similarity=0.194  Sum_probs=44.5

Q ss_pred             CHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533           79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (325)
Q Consensus        79 ~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~  150 (325)
                      ....+.+.+.+.++..+...  +.+++|.+++.++  +.|.|.+.+        .+ +.+|.||+|+|.++.
T Consensus       143 ~p~~~~~~l~~~~~~~g~~~--~~~~~V~~i~~~~--~~~~v~~~~--------~~-i~a~~vV~aaG~~~~  201 (380)
T TIGR01377       143 YAEKALRALQELAEAHGATV--RDGTKVVEIEPTE--LLVTVKTTK--------GS-YQANKLVVTAGAWTS  201 (380)
T ss_pred             cHHHHHHHHHHHHHHcCCEE--ECCCeEEEEEecC--CeEEEEeCC--------CE-EEeCEEEEecCcchH
Confidence            45677778888888887654  8899999998754  567776543        35 889999999997643

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=98.94  E-value=1e-08  Score=94.74  Aligned_cols=58  Identities=17%  Similarity=0.167  Sum_probs=44.5

Q ss_pred             CHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533           79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (325)
Q Consensus        79 ~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~  149 (325)
                      ....+.+.|.+.+++.|...  +++++|.+++..+  +.|.|.+.+        .+ +.+|.||+|+|.++
T Consensus       147 d~~~l~~aL~~~~~~~Gv~i--~~~~~V~~i~~~~--~~~~V~~~~--------g~-i~ad~vV~A~G~~s  204 (393)
T PRK11728        147 DYRAVAEAMAELIQARGGEI--RLGAEVTALDEHA--NGVVVRTTQ--------GE-YEARTLINCAGLMS  204 (393)
T ss_pred             CHHHHHHHHHHHHHhCCCEE--EcCCEEEEEEecC--CeEEEEECC--------CE-EEeCEEEECCCcch
Confidence            45677778888888888654  8999999988754  557776643        36 89999999999765

>PLN02985 squalene monooxygenase

Probab=98.91  E-value=4e-08  Score=93.57  Aligned_cols=138  Identities=20%  Similarity=0.190  Sum_probs=77.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC----C---------------ccCC------CCCCceEeecCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA----S---------------IWKK------YSYDRLRLHLAK   60 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~G----g---------------~w~~------~~y~~~~~~~~~   60 (325)
                      ..+||+|||||++|+++|..|++.|++|+|+||.+...    |               .|..      ....++......
T Consensus        42 ~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~~g  121 (514)
T PLN02985         42 GATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYKDG  121 (514)
T ss_pred             CCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEECC
Confidence            45799999999999999999999999999999975211    1               1110      001111111111


Q ss_pred             Cc--cCCCCCC--CCCCC-CCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEE
Q 020533           61 QF--CQLPHLP--FPSSY-PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY  135 (325)
Q Consensus        61 ~~--~~~~~~~--~~~~~-~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~  135 (325)
                      ..  ..++...  .+... .....+.++.+.|.+.+...+ ...+.. .+++++..++ .....|++...++   +..+ 
T Consensus       122 ~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~-~V~i~~-gtvv~li~~~-~~v~gV~~~~~dG---~~~~-  194 (514)
T PLN02985        122 KEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLP-NVRLEE-GTVKSLIEEK-GVIKGVTYKNSAG---EETT-  194 (514)
T ss_pred             EEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCC-CeEEEe-eeEEEEEEcC-CEEEEEEEEcCCC---CEEE-
Confidence            10  1111100  00000 013456788888988887653 122344 4566665443 1112344433222   2256 


Q ss_pred             EEeCeEEEcccCCCC
Q 020533          136 YSGRFLVVASGETTN  150 (325)
Q Consensus       136 ~~ad~vIiAtG~~~~  150 (325)
                      +.+|.||.|+|.+|.
T Consensus       195 ~~AdLVVgADG~~S~  209 (514)
T PLN02985        195 ALAPLTVVCDGCYSN  209 (514)
T ss_pred             EECCEEEECCCCchH
Confidence            789999999998774

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.90  E-value=2.5e-08  Score=95.02  Aligned_cols=132  Identities=16%  Similarity=0.204  Sum_probs=76.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC-CCCCccCCCCCCceE-------eecC---------CCccCCCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN-CYASIWKKYSYDRLR-------LHLA---------KQFCQLPHL   68 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~-~~Gg~w~~~~y~~~~-------~~~~---------~~~~~~~~~   68 (325)
                      .++||+|||||++|++||..+++.|.+|+++|++. .+|+.-......+..       ++..         ....++...
T Consensus         3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~l   82 (618)
T PRK05192          3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRML   82 (618)
T ss_pred             ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeec
Confidence            35899999999999999999999999999999983 555421100000000       0000         000001000


Q ss_pred             CC---CCC--CCCCCCHHHHHHHHHHHHHHc-CCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEE
Q 020533           69 PF---PSS--YPMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLV  142 (325)
Q Consensus        69 ~~---~~~--~~~~~~~~~~~~yl~~~a~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vI  142 (325)
                      ..   |.-  ......+..+...+.+.++.. ++.   .+.++|.++..++ .....|.+.++       .. +.|+.||
T Consensus        83 n~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~---I~q~~V~~Li~e~-grV~GV~t~dG-------~~-I~Ak~VI  150 (618)
T PRK05192         83 NTSKGPAVRALRAQADRKLYRAAMREILENQPNLD---LFQGEVEDLIVEN-GRVVGVVTQDG-------LE-FRAKAVV  150 (618)
T ss_pred             ccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcE---EEEeEEEEEEecC-CEEEEEEECCC-------CE-EECCEEE
Confidence            00   000  011234556677777777765 443   4677788876653 22233555443       57 8999999


Q ss_pred             EcccCCC
Q 020533          143 VASGETT  149 (325)
Q Consensus       143 iAtG~~~  149 (325)
                      +|||.+.
T Consensus       151 lATGTFL  157 (618)
T PRK05192        151 LTTGTFL  157 (618)
T ss_pred             EeeCcch
Confidence            9999654

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=98.90  E-value=1.8e-08  Score=87.28  Aligned_cols=145  Identities=20%  Similarity=0.335  Sum_probs=97.2

Q ss_pred             CCCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC--C---------------------------ccCCCC-
Q 020533            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA--S---------------------------IWKKYS-   50 (325)
Q Consensus         1 M~~~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~G--g---------------------------~w~~~~-   50 (325)
                      |.++....+++|||||.-|+++|++|+++|.++.++|+.+-+-  |                           .|+... 
T Consensus         1 ~~~~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~   80 (399)
T KOG2820|consen    1 SSEMVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPE   80 (399)
T ss_pred             CcccccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChh
Confidence            4556667899999999999999999999999999999876221  1                           122110 


Q ss_pred             CCceEe-------e--------------------------cCCCc-cCCC-CCCCCCCCC-------CCCCHHHHHHHHH
Q 020533           51 YDRLRL-------H--------------------------LAKQF-CQLP-HLPFPSSYP-------MFVSRAQFIEHLD   88 (325)
Q Consensus        51 y~~~~~-------~--------------------------~~~~~-~~~~-~~~~~~~~~-------~~~~~~~~~~yl~   88 (325)
                      ..+..+       .                          .+... -.|| ..++++++.       .+....+-...++
T Consensus        81 ~~g~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~  160 (399)
T KOG2820|consen   81 ESGVKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQ  160 (399)
T ss_pred             hhceeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHH
Confidence            000000       0                          00000 0244 455666554       3456678888899


Q ss_pred             HHHHHcCCCceeeeCeEEEEEEEcCC-CCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCC
Q 020533           89 HYVSHFNIGPSIRYQRSVESASYDEA-TNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPD  155 (325)
Q Consensus        89 ~~a~~~~l~~~i~~~~~V~~i~~~~~-~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~  155 (325)
                      ..+.+.|...  +.+.+|..+...+. .....|.+.++       .. +.++.+|+++|.|....+|.
T Consensus       161 ~~~~~~G~i~--~dg~~v~~~~~~~e~~~~v~V~Tt~g-------s~-Y~akkiI~t~GaWi~klL~~  218 (399)
T KOG2820|consen  161 DKARELGVIF--RDGEKVKFIKFVDEEGNHVSVQTTDG-------SI-YHAKKIIFTVGAWINKLLPT  218 (399)
T ss_pred             HHHHHcCeEE--ecCcceeeEeeccCCCceeEEEeccC-------Ce-eecceEEEEecHHHHhhcCc
Confidence            9999999766  99999999886543 23455666554       46 99999999999886666663

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=98.89  E-value=3.1e-08  Score=97.57  Aligned_cols=61  Identities=15%  Similarity=0.266  Sum_probs=44.1

Q ss_pred             CCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCC
Q 020533           78 VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNP  151 (325)
Q Consensus        78 ~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p  151 (325)
                      .....+.+.+.+.++. ++.  ++++++|++++..+  +.|.|.+.++       .. +.++.||+|+|.++..
T Consensus       405 v~p~~l~~aL~~~a~~-Gv~--i~~~~~V~~i~~~~--~~~~v~t~~g-------~~-~~ad~VV~A~G~~s~~  465 (662)
T PRK01747        405 LCPAELCRALLALAGQ-QLT--IHFGHEVARLERED--DGWQLDFAGG-------TL-ASAPVVVLANGHDAAR  465 (662)
T ss_pred             eCHHHHHHHHHHhccc-CcE--EEeCCEeeEEEEeC--CEEEEEECCC-------cE-EECCEEEECCCCCccc
Confidence            3445666777777766 654  48899999998764  6788776543       45 6899999999987643

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=98.89  E-value=2.5e-08  Score=95.84  Aligned_cols=37  Identities=24%  Similarity=0.511  Sum_probs=33.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY   42 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~   42 (325)
                      ..+||+|||||+.|+++|+.|+++|++|+|+|+++..
T Consensus         5 ~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~   41 (546)
T PRK11101          5 QETDVIIIGGGATGAGIARDCALRGLRCILVERHDIA   41 (546)
T ss_pred             ccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence            3589999999999999999999999999999997643

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=98.88  E-value=2.4e-08  Score=94.24  Aligned_cols=62  Identities=15%  Similarity=0.179  Sum_probs=46.8

Q ss_pred             CHHHHHHHHHHHHHH----cCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533           79 SRAQFIEHLDHYVSH----FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (325)
Q Consensus        79 ~~~~~~~yl~~~a~~----~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~  150 (325)
                      ....+...+.+.+++    .|....++++++|++++..+ ++.|.|++.+        .+ +.||+||+|+|.++.
T Consensus       209 d~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~-~~~~~V~T~~--------G~-i~A~~VVvaAG~~S~  274 (497)
T PTZ00383        209 DYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSN-DSLYKIHTNR--------GE-IRARFVVVSACGYSL  274 (497)
T ss_pred             CHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC-CCeEEEEECC--------CE-EEeCEEEECcChhHH
Confidence            445677777777777    66445569999999998763 3568887764        46 899999999998763

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.87  E-value=2.9e-08  Score=92.55  Aligned_cols=136  Identities=15%  Similarity=0.167  Sum_probs=79.9

Q ss_pred             eEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC-----------C----C-C--------------------
Q 020533            9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY-----------S----Y-D--------------------   52 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~-----------~----y-~--------------------   52 (325)
                      ||+|||+|.+||+||..++++|.+|+|+||.+..||.-...           .    . +                    
T Consensus         1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~   80 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLNDPD   80 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-HH
T ss_pred             CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeecccccccccc
Confidence            79999999999999999999999999999999877632210           0    0 0                    


Q ss_pred             -------------------ceEeec-CCC---ccCCCCCCCC----CCC-----CCCCCHHHHHHHHHHHHHHcCCCcee
Q 020533           53 -------------------RLRLHL-AKQ---FCQLPHLPFP----SSY-----PMFVSRAQFIEHLDHYVSHFNIGPSI  100 (325)
Q Consensus        53 -------------------~~~~~~-~~~---~~~~~~~~~~----~~~-----~~~~~~~~~~~yl~~~a~~~~l~~~i  100 (325)
                                         ++.... ...   ...+......    ...     ........+.+.+.+.+++.++  .+
T Consensus        81 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv--~i  158 (417)
T PF00890_consen   81 LVRAFVENSPEAIDWLEELGVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEAGV--DI  158 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHTTE--EE
T ss_pred             hhhhhhhcccceehhhhhhcccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHhhcCe--ee
Confidence                               000000 000   0000000000    000     1122567888999999999984  45


Q ss_pred             eeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533          101 RYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (325)
Q Consensus       101 ~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~  150 (325)
                      +++++++++..++ ...--|...+...+  +... +.++.||+|||.+..
T Consensus       159 ~~~~~~~~Li~e~-g~V~Gv~~~~~~~g--~~~~-i~A~aVIlAtGG~~~  204 (417)
T PF00890_consen  159 RFNTRVTDLITED-GRVTGVVAENPADG--EFVR-IKAKAVILATGGFGG  204 (417)
T ss_dssp             EESEEEEEEEEET-TEEEEEEEEETTTC--EEEE-EEESEEEE----BGG
T ss_pred             eccceeeeEEEeC-CceeEEEEEECCCC--eEEE-EeeeEEEeccCcccc
Confidence            9999999998864 22233445532222  4467 899999999997664

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=98.87  E-value=5.5e-08  Score=91.57  Aligned_cols=39  Identities=23%  Similarity=0.272  Sum_probs=34.0

Q ss_pred             CCCCeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCCC
Q 020533            5 AAGVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYA   43 (325)
Q Consensus         5 ~~~~~v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~~~G   43 (325)
                      ...+||+|||||++|+++|..|++.  +.+|+|+||.+.+|
T Consensus         4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a   44 (497)
T PRK13339          4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPA   44 (497)
T ss_pred             CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcc
Confidence            3457999999999999999999998  89999999954444

>PRK07121 hypothetical protein; Validated

Probab=98.87  E-value=9.4e-08  Score=90.98  Aligned_cols=38  Identities=24%  Similarity=0.360  Sum_probs=35.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg   44 (325)
                      .+||+|||+|.+|+++|..+++.|.+|+|+||.+..||
T Consensus        20 ~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG   57 (492)
T PRK07121         20 EADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGG   57 (492)
T ss_pred             ccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCC
Confidence            58999999999999999999999999999999987766

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=98.87  E-value=1.3e-07  Score=89.44  Aligned_cols=135  Identities=16%  Similarity=0.223  Sum_probs=80.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC--CCCccCCCCCCceEeecC------------CC----------
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC--YASIWKKYSYDRLRLHLA------------KQ----------   61 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~--~Gg~w~~~~y~~~~~~~~------------~~----------   61 (325)
                      ..+||+|||+|++|+++|..+++.|.+|+|+||.+.  .||.-....  ++.....            ..          
T Consensus         3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~--G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (466)
T PRK08274          3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTR--NLRCMHDAPQDVLVGAYPEEEFWQDLLRVTG   80 (466)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCC--ceeeeCCCchhhccccccHHHHHHHHHHhhC
Confidence            457999999999999999999999999999999874  455211100  0000000            00          


Q ss_pred             ---------------------cc--CCCCCCCCC------CCCC--CCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEE
Q 020533           62 ---------------------FC--QLPHLPFPS------SYPM--FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESAS  110 (325)
Q Consensus        62 ---------------------~~--~~~~~~~~~------~~~~--~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~  110 (325)
                                           +.  .+.......      ....  ......+...|.+.+++.++..  +++++|+++.
T Consensus        81 ~~~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~i--~~~t~v~~l~  158 (466)
T PRK08274         81 GRTDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVEI--RYDAPVTALE  158 (466)
T ss_pred             CCCCHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCEE--EcCCEEEEEE
Confidence                                 00  000000000      0000  0113567778888888888654  9999999998


Q ss_pred             EcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533          111 YDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (325)
Q Consensus       111 ~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~  149 (325)
                      .++ ...+.|......+   +... +.++.||+|||.+.
T Consensus       159 ~~~-g~v~gv~~~~~~g---~~~~-i~a~~VIlAtGg~~  192 (466)
T PRK08274        159 LDD-GRFVGARAGSAAG---GAER-IRAKAVVLAAGGFE  192 (466)
T ss_pred             ecC-CeEEEEEEEccCC---ceEE-EECCEEEECCCCCC
Confidence            753 2223344432211   2256 89999999999754

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=98.86  E-value=8.7e-08  Score=89.11  Aligned_cols=64  Identities=16%  Similarity=0.099  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533           80 RAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (325)
Q Consensus        80 ~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~  150 (325)
                      ...+...+.+.+.+.|...  +++++|++++.++  +.|.+.+.+....  +..+ +++|+||+|+|.++.
T Consensus       196 ~~~~~~~l~~~a~~~G~~i--~~~~~V~~i~~~~--~~~~v~~~~~~~~--~~~~-i~a~~vV~a~G~~s~  259 (410)
T PRK12409        196 IHKFTTGLAAACARLGVQF--RYGQEVTSIKTDG--GGVVLTVQPSAEH--PSRT-LEFDGVVVCAGVGSR  259 (410)
T ss_pred             HHHHHHHHHHHHHhCCCEE--EcCCEEEEEEEeC--CEEEEEEEcCCCC--ccce-EecCEEEECCCcChH
Confidence            3456666777788888654  8899999998754  5677766543210  0146 899999999998753

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=98.84  E-value=4.2e-08  Score=94.94  Aligned_cols=131  Identities=18%  Similarity=0.235  Sum_probs=79.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC--CC-CccCC------C-------------------CC-CceEe
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC--YA-SIWKK------Y-------------------SY-DRLRL   56 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~--~G-g~w~~------~-------------------~y-~~~~~   56 (325)
                      .+.+|+|||||++||++|..|++.|++|+||||.+.  .+ |.+..      +                   .+ ...+.
T Consensus        80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~i  159 (668)
T PLN02927         80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDRI  159 (668)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCccccee
Confidence            457999999999999999999999999999999752  11 11110      0                   00 00000


Q ss_pred             ----ec-CC-CccCCCCCCCCC--CCC--CCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecC
Q 020533           57 ----HL-AK-QFCQLPHLPFPS--SYP--MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLL  126 (325)
Q Consensus        57 ----~~-~~-~~~~~~~~~~~~--~~~--~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~  126 (325)
                          +. .. ....+.......  ..+  ....+.++.+.|.+.   .+. ..++++++|++++.++  +.++|++.++ 
T Consensus       160 ~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~a---lg~-~~i~~g~~V~~I~~~~--d~VtV~~~dG-  232 (668)
T PLN02927        160 NGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARA---VGE-DVIRNESNVVDFEDSG--DKVTVVLENG-  232 (668)
T ss_pred             eeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhh---CCC-CEEEcCCEEEEEEEeC--CEEEEEECCC-
Confidence                00 00 001111111000  011  124677777777443   332 2357889999998754  6677777664 


Q ss_pred             CCCceeEEEEEeCeEEEcccCCCC
Q 020533          127 SPGREIEEYYSGRFLVVASGETTN  150 (325)
Q Consensus       127 ~~~~~~~~~~~ad~vIiAtG~~~~  150 (325)
                            .+ +.+|.||.|.|.+|.
T Consensus       233 ------~t-i~aDlVVGADG~~S~  249 (668)
T PLN02927        233 ------QR-YEGDLLVGADGIWSK  249 (668)
T ss_pred             ------CE-EEcCEEEECCCCCcH
Confidence                  46 889999999998773

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=98.83  E-value=3.2e-08  Score=88.00  Aligned_cols=145  Identities=17%  Similarity=0.235  Sum_probs=88.5

Q ss_pred             CCCCCCCCeEEEECCChHHHHHHHHHHhc------CCCeEEEecCCCCCCccCCC----------CCCc-----------
Q 020533            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQ------SIPYVILERENCYASIWKKY----------SYDR-----------   53 (325)
Q Consensus         1 M~~~~~~~~v~IIGaG~~Gl~~a~~L~~~------g~~v~v~e~~~~~Gg~w~~~----------~y~~-----------   53 (325)
                      |......+||+||||||+||++|.+|.+.      .++|+|+|+...+||.--..          ..+.           
T Consensus        70 ~~R~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~  149 (621)
T KOG2415|consen   70 MERESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTP  149 (621)
T ss_pred             chhhhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCccccc
Confidence            34445678999999999999999999764      46899999999999832221          0111           


Q ss_pred             -----eEeecCCCccCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecC-
Q 020533           54 -----LRLHLAKQFCQLPHL-PFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLL-  126 (325)
Q Consensus        54 -----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~-  126 (325)
                           +.+-+.+.-...+.. |+...-....+-.++..||-+.|+.+|+++  .-+..+..+-++++....-|.+.+.. 
T Consensus       150 vT~d~~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEi--yPg~aaSevly~edgsVkGiaT~D~GI  227 (621)
T KOG2415|consen  150 VTSDKFKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEI--YPGFAASEVLYDEDGSVKGIATNDVGI  227 (621)
T ss_pred             ccccceeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCcee--ccccchhheeEcCCCcEeeEeeccccc
Confidence                 111111111111111 111122223567899999999999999876  65655666666654444444443321 


Q ss_pred             ---CCCc----eeEEEEEeCeEEEcccCC
Q 020533          127 ---SPGR----EIEEYYSGRFLVVASGET  148 (325)
Q Consensus       127 ---~~~~----~~~~~~~ad~vIiAtG~~  148 (325)
                         +..+    .-.+ ++++.-|.|-|.+
T Consensus       228 ~k~G~pKd~FerGme-~hak~TifAEGc~  255 (621)
T KOG2415|consen  228 SKDGAPKDTFERGME-FHAKVTIFAEGCH  255 (621)
T ss_pred             cCCCCccccccccce-ecceeEEEecccc
Confidence               0000    1146 8899999999964

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=98.82  E-value=1.8e-08  Score=92.13  Aligned_cols=62  Identities=15%  Similarity=0.208  Sum_probs=45.1

Q ss_pred             CHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533           79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (325)
Q Consensus        79 ~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~  150 (325)
                      ...++...+...+.+.|...  +++++|+.++...+ +.+.+.+.+++      .+ ++|++||.|.|.++.
T Consensus       151 ~~~~~t~~l~e~a~~~g~~i--~ln~eV~~i~~~~d-g~~~~~~~~g~------~~-~~ak~Vin~AGl~Ad  212 (429)
T COG0579         151 DPGELTRALAEEAQANGVEL--RLNTEVTGIEKQSD-GVFVLNTSNGE------ET-LEAKFVINAAGLYAD  212 (429)
T ss_pred             cHHHHHHHHHHHHHHcCCEE--EecCeeeEEEEeCC-ceEEEEecCCc------EE-EEeeEEEECCchhHH
Confidence            34566666777777777655  99999999998762 34555555542      55 899999999997653

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.81  E-value=1.2e-07  Score=88.61  Aligned_cols=134  Identities=22%  Similarity=0.274  Sum_probs=87.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC--------CC-----------------------Cce
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY--------SY-----------------------DRL   54 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~--------~y-----------------------~~~   54 (325)
                      ..+||+|||||+.|+.+|+.++.+|++|+++|+++-..|+-...        +|                       |.+
T Consensus        11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~APH~   90 (532)
T COG0578          11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIAPHL   90 (532)
T ss_pred             cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhCccc
Confidence            67899999999999999999999999999999999766643321        00                       000


Q ss_pred             EeecCCCccCCCCCC--CCCC---------------------------------CC---------------CCCCHHHHH
Q 020533           55 RLHLAKQFCQLPHLP--FPSS---------------------------------YP---------------MFVSRAQFI   84 (325)
Q Consensus        55 ~~~~~~~~~~~~~~~--~~~~---------------------------------~~---------------~~~~~~~~~   84 (325)
                      .-..+   .-++.++  .+.+                                 .|               .......+.
T Consensus        91 v~p~~---~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRLv  167 (532)
T COG0578          91 VEPLP---FLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARLV  167 (532)
T ss_pred             cccCc---CeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHHH
Confidence            00000   0000000  0000                                 00               011223444


Q ss_pred             HHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533           85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (325)
Q Consensus        85 ~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~  149 (325)
                      .-...-|.+.|-..  ...++|+++.++.  +.|-|+.++..++  +..+ ++++.||.|||.|.
T Consensus       168 ~~~a~~A~~~Ga~i--l~~~~v~~~~re~--~v~gV~~~D~~tg--~~~~-ira~~VVNAaGpW~  225 (532)
T COG0578         168 AANARDAAEHGAEI--LTYTRVESLRREG--GVWGVEVEDRETG--ETYE-IRARAVVNAAGPWV  225 (532)
T ss_pred             HHHHHHHHhcccch--hhcceeeeeeecC--CEEEEEEEecCCC--cEEE-EEcCEEEECCCccH
Confidence            44455566777655  7888999999876  4899999987766  5578 99999999999764

>TIGR02053 MerA mercuric reductase

Probab=98.80  E-value=2.9e-07  Score=87.01  Aligned_cols=104  Identities=16%  Similarity=0.170  Sum_probs=77.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+..                               .  ...++..+
T Consensus       166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~--~d~~~~~~  212 (463)
T TIGR02053       166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLP-------------------------------R--EEPEISAA  212 (463)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCC-------------------------------c--cCHHHHHH
Confidence            36899999999999999999999999999999875320                               0  12356677


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p  154 (325)
                      +.+..++.++..  +++++|.+++.++  +.+.+++...+++    .+ +.+|.||+|+|  ..|+..
T Consensus       213 l~~~l~~~gV~i--~~~~~V~~i~~~~--~~~~v~~~~~~~~----~~-i~~D~ViiA~G--~~p~~~  269 (463)
T TIGR02053       213 VEEALAEEGIEV--VTSAQVKAVSVRG--GGKIITVEKPGGQ----GE-VEADELLVATG--RRPNTD  269 (463)
T ss_pred             HHHHHHHcCCEE--EcCcEEEEEEEcC--CEEEEEEEeCCCc----eE-EEeCEEEEeEC--CCcCCC
Confidence            788888878655  9999999997653  4455655432221    57 89999999999  556554

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=98.80  E-value=8.2e-08  Score=89.21  Aligned_cols=35  Identities=40%  Similarity=0.552  Sum_probs=31.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhc-CC-CeEEEecCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQ-SI-PYVILEREN   40 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~-g~-~v~v~e~~~   40 (325)
                      ..+||+|||||+.|+++|++|++. |. +|+|+|+..
T Consensus        29 ~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~   65 (407)
T TIGR01373        29 PTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW   65 (407)
T ss_pred             ccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence            468999999999999999999995 85 899999976

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.79  E-value=2.3e-07  Score=87.85  Aligned_cols=105  Identities=16%  Similarity=0.208  Sum_probs=75.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++|+.+.+..                               .  ...++.++
T Consensus       180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~-------------------------------~--~~~~~~~~  226 (472)
T PRK05976        180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILP-------------------------------T--EDAELSKE  226 (472)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCC-------------------------------c--CCHHHHHH
Confidence            36899999999999999999999999999999875310                               0  12356677


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p  154 (325)
                      +.+..++.++..  +++++|.+++..+.++...+...++     +..+ +.+|.||+|+|  ..|+.+
T Consensus       227 l~~~l~~~gI~i--~~~~~v~~i~~~~~~~~~~~~~~~g-----~~~~-i~~D~vi~a~G--~~p~~~  284 (472)
T PRK05976        227 VARLLKKLGVRV--VTGAKVLGLTLKKDGGVLIVAEHNG-----EEKT-LEADKVLVSVG--RRPNTE  284 (472)
T ss_pred             HHHHHHhcCCEE--EeCcEEEEEEEecCCCEEEEEEeCC-----ceEE-EEeCEEEEeeC--CccCCC
Confidence            777788888655  9999999997521122222223332     2257 89999999999  556544

>PRK08275 putative oxidoreductase; Provisional

Probab=98.79  E-value=2.3e-07  Score=89.49  Aligned_cols=145  Identities=10%  Similarity=0.096  Sum_probs=82.8

Q ss_pred             CCCCCCCCeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCC-CCccCCC--CCCc-eE--eecCCCc----------
Q 020533            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCY-ASIWKKY--SYDR-LR--LHLAKQF----------   62 (325)
Q Consensus         1 M~~~~~~~~v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~~~-Gg~w~~~--~y~~-~~--~~~~~~~----------   62 (325)
                      |......+||+|||+|.+|++||..+++.  |.+|+|+||.+.. +|.+...  .... +.  .+.+..+          
T Consensus         3 ~~~~~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~   82 (554)
T PRK08275          3 MNTQEVETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDG   82 (554)
T ss_pred             CCceeEecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCC
Confidence            44444568999999999999999999987  6899999998753 2221100  0000 00  0000000          


Q ss_pred             -----------------------cCCCCCCCCCC---------CC----CCCCHHHHHHHHHHHHHHcCCCceeeeCeEE
Q 020533           63 -----------------------CQLPHLPFPSS---------YP----MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSV  106 (325)
Q Consensus        63 -----------------------~~~~~~~~~~~---------~~----~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V  106 (325)
                                             +..++......         ..    .......+.+.|.+.+++.++..  .+++.+
T Consensus        83 ~~d~~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~i--~~~~~v  160 (554)
T PRK08275         83 IVDQKAVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARVLI--TNRIMA  160 (554)
T ss_pred             CccHHHHHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCCEE--EcceEE
Confidence                                   00000000000         00    01245678888888888877554  999999


Q ss_pred             EEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533          107 ESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (325)
Q Consensus       107 ~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~  150 (325)
                      +++..+++....-+...+...+  +... +.++.||+|||.++.
T Consensus       161 ~~Li~~~~g~v~Gv~~~~~~~g--~~~~-i~Ak~VIlATGG~~~  201 (554)
T PRK08275        161 TRLLTDADGRVAGALGFDCRTG--EFLV-IRAKAVILCCGAAGR  201 (554)
T ss_pred             EEEEEcCCCeEEEEEEEecCCC--cEEE-EECCEEEECCCCccc
Confidence            9997652222222333222121  2356 899999999997653

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=98.79  E-value=8.1e-08  Score=90.74  Aligned_cols=66  Identities=18%  Similarity=0.292  Sum_probs=47.0

Q ss_pred             CHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533           79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (325)
Q Consensus        79 ~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~  150 (325)
                      ....+...+.+.+.+.|..  ++++++|++++.++ ++.|.+++.+..++  +..+ +.+++||+|+|.++.
T Consensus       176 dp~~l~~aL~~~a~~~Gv~--i~~~t~V~~i~~~~-~~~v~v~~~~~~~g--~~~~-i~A~~VV~AAG~~s~  241 (483)
T TIGR01320       176 DFGALTKQLLGYLVQNGTT--IRFGHEVRNLKRQS-DGSWTVTVKNTRTG--GKRT-LNTRFVFVGAGGGAL  241 (483)
T ss_pred             CHHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcC-CCeEEEEEeeccCC--ceEE-EECCEEEECCCcchH
Confidence            4466777777777777754  49999999998753 35688876543222  1246 899999999998763

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=98.79  E-value=4.4e-08  Score=92.42  Aligned_cols=60  Identities=7%  Similarity=0.040  Sum_probs=43.8

Q ss_pred             CHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCC
Q 020533           79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF  152 (325)
Q Consensus        79 ~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~  152 (325)
                      ....+...|.+.+++.|...  +.++.|++++..   +.|.|++.+        .+ +.+|.||+|+|.++...
T Consensus       181 ~P~~l~~~L~~~a~~~Gv~i--~~~t~V~~i~~~---~~~~v~t~~--------g~-v~A~~VV~Atga~s~~l  240 (460)
T TIGR03329       181 QPGLLVRGLRRVALELGVEI--HENTPMTGLEEG---QPAVVRTPD--------GQ-VTADKVVLALNAWMASH  240 (460)
T ss_pred             CHHHHHHHHHHHHHHcCCEE--ECCCeEEEEeeC---CceEEEeCC--------cE-EECCEEEEccccccccc
Confidence            44566677777788888654  899999998742   457776654        35 89999999999876543

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>TIGR00136 gidA glucose-inhibited division protein A

Probab=98.78  E-value=1.2e-07  Score=90.37  Aligned_cols=132  Identities=12%  Similarity=0.139  Sum_probs=78.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCc--cCCC----CCCceE--eecCC---------CccCCCCC--
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI--WKKY----SYDRLR--LHLAK---------QFCQLPHL--   68 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~--w~~~----~y~~~~--~~~~~---------~~~~~~~~--   68 (325)
                      +||+|||||++|+.+|..+++.|.+|+++|++...+|.  ++..    .+..+.  ++...         ...++...  
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~   80 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNS   80 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheeccc
Confidence            68999999999999999999999999999987533221  1100    000000  00000         00001110  


Q ss_pred             ---CCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcc
Q 020533           69 ---PFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVAS  145 (325)
Q Consensus        69 ---~~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAt  145 (325)
                         +..........+..+..++.+.+++.+...  .+..+|+.+..+++.....|.+.++       .. +.|+.||+||
T Consensus        81 skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~--Ile~~Vv~li~e~~g~V~GV~t~~G-------~~-I~Ad~VILAT  150 (617)
T TIGR00136        81 SKGPAVRATRAQIDKVLYRKAMRNALENQPNLS--LFQGEVEDLILEDNDEIKGVVTQDG-------LK-FRAKAVIITT  150 (617)
T ss_pred             CCCCcccccHHhCCHHHHHHHHHHHHHcCCCcE--EEEeEEEEEEEecCCcEEEEEECCC-------CE-EECCEEEEcc
Confidence               100001123466777888888888874222  4566777776543234455666553       46 8999999999


Q ss_pred             cCCC
Q 020533          146 GETT  149 (325)
Q Consensus       146 G~~~  149 (325)
                      |.+.
T Consensus       151 GtfL  154 (617)
T TIGR00136       151 GTFL  154 (617)
T ss_pred             Cccc
Confidence            9763

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.78  E-value=1.5e-07  Score=86.55  Aligned_cols=98  Identities=11%  Similarity=0.154  Sum_probs=76.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+..                               .. ...++.++
T Consensus       141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~-------------------------------~~-~~~~~~~~  188 (377)
T PRK04965        141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLA-------------------------------SL-MPPEVSSR  188 (377)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccc-------------------------------hh-CCHHHHHH
Confidence            46899999999999999999999999999999875320                               00 11356677


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET  148 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~  148 (325)
                      +.+.+++.++..  ++++++.+++.++  +.+.+.+.++       .+ +.+|.||+|+|..
T Consensus       189 l~~~l~~~gV~i--~~~~~v~~i~~~~--~~~~v~~~~g-------~~-i~~D~vI~a~G~~  238 (377)
T PRK04965        189 LQHRLTEMGVHL--LLKSQLQGLEKTD--SGIRATLDSG-------RS-IEVDAVIAAAGLR  238 (377)
T ss_pred             HHHHHHhCCCEE--EECCeEEEEEccC--CEEEEEEcCC-------cE-EECCEEEECcCCC
Confidence            777888888654  8899999987654  5677776553       57 8999999999943

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.78  E-value=1.2e-07  Score=91.28  Aligned_cols=142  Identities=16%  Similarity=0.142  Sum_probs=83.3

Q ss_pred             CCCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC-CCCccCC--CCCCce--------------------Eee
Q 020533            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC-YASIWKK--YSYDRL--------------------RLH   57 (325)
Q Consensus         1 M~~~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~-~Gg~w~~--~~y~~~--------------------~~~   57 (325)
                      |......+||+|||+|.+||+||..+ +.|.+|+|+||.+. .||.-..  ..+...                    ..+
T Consensus         1 ~~~~~~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d   79 (543)
T PRK06263          1 MEDEIMITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLND   79 (543)
T ss_pred             CCcceeccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCC
Confidence            55555678999999999999999999 89999999999864 4442111  000000                    000


Q ss_pred             ----------cC---CCccCCCCCCCC-----------CCCCCC--------CCHHHHHHHHHHHHHHcCCCceeeeCeE
Q 020533           58 ----------LA---KQFCQLPHLPFP-----------SSYPMF--------VSRAQFIEHLDHYVSHFNIGPSIRYQRS  105 (325)
Q Consensus        58 ----------~~---~~~~~~~~~~~~-----------~~~~~~--------~~~~~~~~yl~~~a~~~~l~~~i~~~~~  105 (325)
                                .+   ..+..+ ..++.           .....+        .+..++...|.+.+++.++.  +++++.
T Consensus        80 ~~lv~~~~~~s~~~i~~L~~~-Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~--i~~~t~  156 (543)
T PRK06263         80 PKLVEILVKEAPKRLKDLEKF-GALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERIK--ILEEVM  156 (543)
T ss_pred             HHHHHHHHHHHHHHHHHHHHc-CCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCCE--EEeCeE
Confidence                      00   000000 00010           000001        13567888888888777654  499999


Q ss_pred             EEEEEEcCCCC-cEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533          106 VESASYDEATN-MWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (325)
Q Consensus       106 V~~i~~~~~~~-~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~  150 (325)
                      ++++..++ .+ ..-+...+...+  +... +.++.||+|||.+..
T Consensus       157 v~~Li~~~-~~~v~Gv~~~~~~~g--~~~~-i~AkaVIlATGG~~~  198 (543)
T PRK06263        157 AIKLIVDE-NREVIGAIFLDLRNG--EIFP-IYAKATILATGGAGQ  198 (543)
T ss_pred             eeeeEEeC-CcEEEEEEEEECCCC--cEEE-EEcCcEEECCCCCCC
Confidence            99987654 23 223333331111  2356 899999999997653

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.77  E-value=2.8e-07  Score=87.12  Aligned_cols=103  Identities=15%  Similarity=0.182  Sum_probs=77.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|++|+.+|..|.+.|.+|+++|+.+.+..                               .  ...++.+.
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~--~~~~~~~~  216 (461)
T TIGR01350       170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP-------------------------------G--EDAEVSKV  216 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC-------------------------------C--CCHHHHHH
Confidence            36899999999999999999999999999999875320                               0  11356677


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p  154 (325)
                      +.+.+++.++..  +++++|.+++.++  +.+.+...++     +..+ +.+|.||+|+|  ..|+..
T Consensus       217 ~~~~l~~~gi~i--~~~~~v~~i~~~~--~~v~v~~~~g-----~~~~-i~~D~vi~a~G--~~p~~~  272 (461)
T TIGR01350       217 VAKALKKKGVKI--LTNTKVTAVEKND--DQVVYENKGG-----ETET-LTGEKVLVAVG--RKPNTE  272 (461)
T ss_pred             HHHHHHHcCCEE--EeCCEEEEEEEeC--CEEEEEEeCC-----cEEE-EEeCEEEEecC--CcccCC
Confidence            778888888554  9999999997654  4555555432     1146 89999999999  555544

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.77  E-value=2.6e-07  Score=89.58  Aligned_cols=39  Identities=26%  Similarity=0.377  Sum_probs=34.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg   44 (325)
                      ..+||+|||+|.+||+||..+++.|.+|+|+||....+|
T Consensus        11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g   49 (591)
T PRK07057         11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRS   49 (591)
T ss_pred             ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCC
Confidence            457999999999999999999999999999999764433

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=98.77  E-value=6.8e-08  Score=88.39  Aligned_cols=34  Identities=32%  Similarity=0.534  Sum_probs=31.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      +||+|||||++|+++|++|++.|.+|+|+|+...
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~   34 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR   34 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            5899999999999999999999999999999763

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=98.77  E-value=1e-07  Score=92.91  Aligned_cols=39  Identities=23%  Similarity=0.423  Sum_probs=35.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg   44 (325)
                      ..+||+|||||+.|.++|+.|+++|++|+|+|+++..+|
T Consensus        70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~G  108 (627)
T PLN02464         70 EPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSG  108 (627)
T ss_pred             CccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCC
Confidence            458999999999999999999999999999999874434

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.75  E-value=3.2e-07  Score=88.93  Aligned_cols=44  Identities=23%  Similarity=0.313  Sum_probs=37.8

Q ss_pred             CCCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (325)
Q Consensus         1 M~~~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg   44 (325)
                      |+-....+||+|||+|.+||+||..+++.|.+|+|+||....+|
T Consensus         1 ~~~~~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g   44 (588)
T PRK08958          1 MKLPVREFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRS   44 (588)
T ss_pred             CCCCccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence            45445568999999999999999999999999999999865543

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=98.74  E-value=6.9e-08  Score=87.80  Aligned_cols=64  Identities=20%  Similarity=0.403  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHc-CCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCC
Q 020533           82 QFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNP  151 (325)
Q Consensus        82 ~~~~yl~~~a~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p  151 (325)
                      .+.+-+.+++.+. +.  .++++++|+++++.. ++.|.|++.+..++  +..+ +.+++|+++.|..+.+
T Consensus       182 ~LTr~l~~~l~~~~~~--~~~~~~eV~~i~r~~-dg~W~v~~~~~~~~--~~~~-v~a~FVfvGAGG~aL~  246 (488)
T PF06039_consen  182 ALTRQLVEYLQKQKGF--ELHLNHEVTDIKRNG-DGRWEVKVKDLKTG--EKRE-VRAKFVFVGAGGGALP  246 (488)
T ss_pred             HHHHHHHHHHHhCCCc--EEEecCEeCeeEECC-CCCEEEEEEecCCC--CeEE-EECCEEEECCchHhHH
Confidence            4444444455544 54  459999999999875 67799999876554  3477 9999999999976643

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.73  E-value=3.6e-07  Score=88.76  Aligned_cols=38  Identities=18%  Similarity=0.267  Sum_probs=34.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA   43 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~G   43 (325)
                      ..+||+|||+|.+||+||..+++.|.+|+|+||....+
T Consensus        11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~   48 (598)
T PRK09078         11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTR   48 (598)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCC
Confidence            45899999999999999999999999999999986443

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.73  E-value=8.3e-08  Score=86.84  Aligned_cols=125  Identities=15%  Similarity=0.158  Sum_probs=72.4

Q ss_pred             eEEEECCChHHHHHHHHHHhcCCCeEEE-ecCCCCCCccCCCCCCceEee-----------cCCCc--------cC----
Q 020533            9 EVIMVGAGTSGLATAACLSLQSIPYVIL-ERENCYASIWKKYSYDRLRLH-----------LAKQF--------CQ----   64 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~-e~~~~~Gg~w~~~~y~~~~~~-----------~~~~~--------~~----   64 (325)
                      ||+|||||.||+.||..+++.|.+|+++ .+.+.+|..--   .+++.-.           ....+        .+    
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~C---npsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~l   77 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSC---NPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRML   77 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SS---SSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccc---hhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhcc
Confidence            7999999999999999999999999999 45555543211   1111100           00000        00    


Q ss_pred             -CCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEE
Q 020533           65 -LPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVV  143 (325)
Q Consensus        65 -~~~~~~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIi  143 (325)
                       .+.-|-.........+..+.+++++.++...-..  .++.+|+++..+. ...+-|.+.++       .. +.+|.||+
T Consensus        78 N~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~--i~~~~V~~l~~e~-~~v~GV~~~~g-------~~-~~a~~vVl  146 (392)
T PF01134_consen   78 NRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLT--IIQGEVTDLIVEN-GKVKGVVTKDG-------EE-IEADAVVL  146 (392)
T ss_dssp             STTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEE--EEES-EEEEEECT-TEEEEEEETTS-------EE-EEECEEEE
T ss_pred             cccCCCCccchHhhccHHHHHHHHHHHHhcCCCeE--EEEcccceEEecC-CeEEEEEeCCC-------CE-EecCEEEE
Confidence             0000000001123577889999999988854222  4578899998764 33455666554       67 99999999


Q ss_pred             cccC
Q 020533          144 ASGE  147 (325)
Q Consensus       144 AtG~  147 (325)
                      |||.
T Consensus       147 aTGt  150 (392)
T PF01134_consen  147 ATGT  150 (392)
T ss_dssp             -TTT
T ss_pred             eccc
Confidence            9995

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK12839 hypothetical protein; Provisional

Probab=98.73  E-value=6.6e-07  Score=86.40  Aligned_cols=45  Identities=20%  Similarity=0.414  Sum_probs=39.5

Q ss_pred             CC-CCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCc
Q 020533            1 MK-EQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI   45 (325)
Q Consensus         1 M~-~~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~   45 (325)
                      |+ +++..+||+|||+|.+|+++|..+.+.|.+|+|+|+...+||.
T Consensus         1 ~~~~~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~   46 (572)
T PRK12839          1 MTPSMTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGA   46 (572)
T ss_pred             CCCCcCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcc
Confidence            44 3445789999999999999999999999999999999888774

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=98.72  E-value=4.9e-07  Score=88.03  Aligned_cols=39  Identities=23%  Similarity=0.211  Sum_probs=35.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg   44 (325)
                      ..+||+|||+|.+||+||..+++.|.+|+|+||....+|
T Consensus        28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g   66 (617)
T PTZ00139         28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRS   66 (617)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCC
Confidence            357999999999999999999999999999999876554

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.72  E-value=2.6e-07  Score=85.95  Aligned_cols=105  Identities=17%  Similarity=0.214  Sum_probs=82.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      +.+++|||||+.|+..|..+++.|.+|+|+|+.+++-                         |        ...+++.++
T Consensus       173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL-------------------------p--------~~D~ei~~~  219 (454)
T COG1249         173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL-------------------------P--------GEDPEISKE  219 (454)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-------------------------C--------cCCHHHHHH
Confidence            5689999999999999999999999999999999742                         0        123488899


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDI  156 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~  156 (325)
                      +.+..++.++.  ++.++++..++..+  +...++++++..     .. +.+|.|++|+|  ..|+...+
T Consensus       220 ~~~~l~~~gv~--i~~~~~v~~~~~~~--~~v~v~~~~g~~-----~~-~~ad~vLvAiG--R~Pn~~~L  277 (454)
T COG1249         220 LTKQLEKGGVK--ILLNTKVTAVEKKD--DGVLVTLEDGEG-----GT-IEADAVLVAIG--RKPNTDGL  277 (454)
T ss_pred             HHHHHHhCCeE--EEccceEEEEEecC--CeEEEEEecCCC-----CE-EEeeEEEEccC--CccCCCCC
Confidence            99988886644  49999999998765  336677766532     36 88999999999  66776543

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=98.72  E-value=5.2e-07  Score=87.77  Aligned_cols=37  Identities=19%  Similarity=0.374  Sum_probs=33.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCY   42 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~~~   42 (325)
                      ..+||+|||+|.+||+||..+++.  |.+|+|+||.+..
T Consensus        10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~   48 (608)
T PRK06854         10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIK   48 (608)
T ss_pred             eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcC
Confidence            357999999999999999999998  9999999998743

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=98.72  E-value=4.4e-07  Score=88.50  Aligned_cols=39  Identities=26%  Similarity=0.275  Sum_probs=35.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg   44 (325)
                      ..+||+|||+|.+||+||..+++.|.+|+|+||....+|
T Consensus        49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g   87 (635)
T PLN00128         49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRS   87 (635)
T ss_pred             eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCC
Confidence            357999999999999999999999999999999875554

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.72  E-value=5.8e-07  Score=84.96  Aligned_cols=104  Identities=13%  Similarity=0.141  Sum_probs=78.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+++|||+|+.|+.+|..|++.|.+|+++++.+.+..                               .  ..+++.+.
T Consensus       172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~--~~~~~~~~  218 (462)
T PRK06416        172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILP-------------------------------G--EDKEISKL  218 (462)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCC-------------------------------c--CCHHHHHH
Confidence            36899999999999999999999999999999875320                               0  11366777


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p  154 (325)
                      +.+.+++.++..  +++++|.+++.++  +.+.+.+.++.    +..+ +.+|.||+|+|  ..|+..
T Consensus       219 l~~~l~~~gV~i--~~~~~V~~i~~~~--~~v~v~~~~gg----~~~~-i~~D~vi~a~G--~~p~~~  275 (462)
T PRK06416        219 AERALKKRGIKI--KTGAKAKKVEQTD--DGVTVTLEDGG----KEET-LEADYVLVAVG--RRPNTE  275 (462)
T ss_pred             HHHHHHHcCCEE--EeCCEEEEEEEeC--CEEEEEEEeCC----eeEE-EEeCEEEEeeC--CccCCC
Confidence            888888888554  9999999998654  45666655431    2256 89999999999  555543

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=98.71  E-value=5.6e-08  Score=86.40  Aligned_cols=178  Identities=15%  Similarity=0.187  Sum_probs=96.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCCC--------CccCCCCCCceEeecCCCccCCCCC--------
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYA--------SIWKKYSYDRLRLHLAKQFCQLPHL--------   68 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~~~G--------g~w~~~~y~~~~~~~~~~~~~~~~~--------   68 (325)
                      +...+|||+|.+..+++......  +.++.++...+.+-        ..|.+..-...      ..+.|..+        
T Consensus       178 hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~------k~lrfkqwsGkeRsif  251 (659)
T KOG1346|consen  178 HVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSA------KKLRFKQWSGKERSIF  251 (659)
T ss_pred             cCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCChh------hheeecccCCccceeE
Confidence            45689999999988887776654  56788886655422        13332111000      00000000        


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCC
Q 020533           69 PFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET  148 (325)
Q Consensus        69 ~~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~  148 (325)
                      -.|+  ..|.+.+++-.     +..-|+..  ..+.+|+.++..+    -.|+++++       .+ +.+|.++||||  
T Consensus       252 fepd--~FfvspeDLp~-----~~nGGvAv--l~G~kvvkid~~d----~~V~LnDG-------~~-I~YdkcLIATG--  308 (659)
T KOG1346|consen  252 FEPD--GFFVSPEDLPK-----AVNGGVAV--LRGRKVVKIDEED----KKVILNDG-------TT-IGYDKCLIATG--  308 (659)
T ss_pred             ecCC--cceeChhHCcc-----cccCceEE--EeccceEEeeccc----CeEEecCC-------cE-eehhheeeecC--
Confidence            0011  13445544433     23335443  6777888886544    35777776       67 99999999999  


Q ss_pred             CCCCCCC-CCCc-cccccCCCCCccEEecC-CCCCC-CCC-CCCeEEEECcCCCHHHHHHHHhhc----cCeEEEEEe
Q 020533          149 TNPFTPD-IRGL-CSFCSSATGTGEVIHST-QYKNG-KPY-GGKNVLVVGSGNSGMEIALDLANH----AAKTSLVVR  217 (325)
Q Consensus       149 ~~p~~p~-~~g~-~~~~~~~~~~g~~~~~~-~~~~~-~~~-~~~~v~VvG~G~s~~e~a~~l~~~----~~~v~~~~r  217 (325)
                      ..|...+ +... ++.    ..+-.++|.. +++.. ... .-++|.|||+|..|-|+|..|.+.    |.+|+.+..
T Consensus       309 ~~Pk~l~~~~~A~~ev----k~kit~fr~p~DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~  382 (659)
T KOG1346|consen  309 VRPKKLQVFEEASEEV----KQKITYFRYPADFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFE  382 (659)
T ss_pred             cCcccchhhhhcCHHh----hhheeEEecchHHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeec
Confidence            5565432 2111 011    0011222221 11110 001 136899999999999999999875    445654443

>PRK07208 hypothetical protein; Provisional

Probab=98.71  E-value=4.4e-08  Score=93.01  Aligned_cols=53  Identities=26%  Similarity=0.456  Sum_probs=44.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeec
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHL   58 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~   58 (325)
                      ..+||+|||||++||++|..|.++|++|+|+|+++++||.+....+.+..++.
T Consensus         3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~g~~~d~   55 (479)
T PRK07208          3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKGNRFDI   55 (479)
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccCCceEcc
Confidence            34689999999999999999999999999999999999987765555444433

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.70  E-value=7.1e-07  Score=84.22  Aligned_cols=102  Identities=15%  Similarity=0.133  Sum_probs=75.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+..                               .  ...++.+.
T Consensus       170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~-------------------------------~--~d~e~~~~  216 (458)
T PRK06912        170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP-------------------------------G--EDEDIAHI  216 (458)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc-------------------------------c--ccHHHHHH
Confidence            35899999999999999999999999999999875320                               0  12357777


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p  154 (325)
                      +.+..++.++..  +++++|.+++.++  ..+.+.. ++     +..+ +.+|.||+|+|  ..|+..
T Consensus       217 l~~~L~~~GI~i--~~~~~V~~i~~~~--~~v~~~~-~g-----~~~~-i~~D~vivA~G--~~p~~~  271 (458)
T PRK06912        217 LREKLENDGVKI--FTGAALKGLNSYK--KQALFEY-EG-----SIQE-VNAEFVLVSVG--RKPRVQ  271 (458)
T ss_pred             HHHHHHHCCCEE--EECCEEEEEEEcC--CEEEEEE-CC-----ceEE-EEeCEEEEecC--CccCCC
Confidence            888888888655  9999999987543  3333332 11     1257 89999999999  556554

>PRK07804 L-aspartate oxidase; Provisional

Probab=98.70  E-value=2.4e-07  Score=89.00  Aligned_cols=140  Identities=14%  Similarity=0.061  Sum_probs=82.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCc--------cCCCCC-C-------ce------Eee------
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI--------WKKYSY-D-------RL------RLH------   57 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~--------w~~~~y-~-------~~------~~~------   57 (325)
                      ..+||+|||+|.+||+||..+++.|.+|+|+||....+|.        +..... +       .+      .++      
T Consensus        15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~~   94 (541)
T PRK07804         15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVRS   94 (541)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence            3589999999999999999999999999999998866541        111000 0       00      000      


Q ss_pred             ----cC-------CCccCCCCC-------------CCCCCC--CCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEE
Q 020533           58 ----LA-------KQFCQLPHL-------------PFPSSY--PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASY  111 (325)
Q Consensus        58 ----~~-------~~~~~~~~~-------------~~~~~~--~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~  111 (325)
                          .+       ..-..|...             ..+...  ..-.....+.+.|.+.+++.++.  +++++.|+++..
T Consensus        95 ~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~--i~~~~~v~~Li~  172 (541)
T PRK07804         95 LVAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLD--IREHALALDLLT  172 (541)
T ss_pred             HHHHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCE--EEECeEeeeeEE
Confidence                00       000001100             000000  00124567888898888888854  599999999976


Q ss_pred             cCCCCcEEEEEeec---CCCCceeEEEEEeCeEEEcccCCCC
Q 020533          112 DEATNMWNVKASNL---LSPGREIEEYYSGRFLVVASGETTN  150 (325)
Q Consensus       112 ~~~~~~~~v~~~~~---~~~~~~~~~~~~ad~vIiAtG~~~~  150 (325)
                      +++....-+...+.   ..+  .... +.++.||+|||.++.
T Consensus       173 ~~~g~v~Gv~~~~~~~~~~~--g~~~-i~Ak~VIlATGG~~~  211 (541)
T PRK07804        173 DGTGAVAGVTLHVLGEGSPD--GVGA-VHAPAVVLATGGLGQ  211 (541)
T ss_pred             cCCCeEEEEEEEeccCCCCC--cEEE-EEcCeEEECCCCCCC
Confidence            54222223333311   111  1246 899999999998664

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=98.69  E-value=2e-07  Score=88.31  Aligned_cols=65  Identities=14%  Similarity=0.308  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533           81 AQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (325)
Q Consensus        81 ~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~  150 (325)
                      ..+.+.|.+.+++.+ ...++++++|++++..+ ++.|.+++.+..++  +..+ +.+++||+|+|.++.
T Consensus       183 ~~l~~aL~~~a~~~G-gv~i~~~teV~~I~~~~-dg~~~v~~~~~~~G--~~~~-i~A~~VVvaAGg~s~  247 (494)
T PRK05257        183 GALTRQLVGYLQKQG-NFELQLGHEVRDIKRND-DGSWTVTVKDLKTG--EKRT-VRAKFVFIGAGGGAL  247 (494)
T ss_pred             HHHHHHHHHHHHhCC-CeEEEeCCEEEEEEECC-CCCEEEEEEEcCCC--ceEE-EEcCEEEECCCcchH
Confidence            356666667777665 12459999999998754 34598877642222  1146 899999999998763

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.69  E-value=6.3e-07  Score=86.92  Aligned_cols=38  Identities=21%  Similarity=0.221  Sum_probs=34.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg   44 (325)
                      +.||+|||+|.+||+||..+++.|.+|+|+||.+..||
T Consensus         3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g   40 (589)
T PRK08641          3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRS   40 (589)
T ss_pred             CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence            46999999999999999999999999999999876543

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.68  E-value=6.2e-07  Score=87.66  Aligned_cols=37  Identities=24%  Similarity=0.323  Sum_probs=33.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA   43 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~G   43 (325)
                      .+||+|||+|.+||+||..+++.|.+|+|+|+...++
T Consensus        35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~   71 (640)
T PRK07573         35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPR   71 (640)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            5799999999999999999999999999999876543

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.68  E-value=2.5e-08  Score=94.51  Aligned_cols=53  Identities=26%  Similarity=0.465  Sum_probs=45.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLA   59 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~   59 (325)
                      .+||+|||||++||++|..|+++|++|+|+||++.+||..+...+.+.+.+..
T Consensus         3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~Gf~fd~G   55 (487)
T COG1233           3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFDTG   55 (487)
T ss_pred             CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEeccceEeccC
Confidence            47999999999999999999999999999999999999766655555554443

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=98.67  E-value=1.5e-06  Score=82.24  Aligned_cols=42  Identities=21%  Similarity=0.256  Sum_probs=37.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhc----CCCeEEEecCCCCCCccC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQ----SIPYVILERENCYASIWK   47 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~----g~~v~v~e~~~~~Gg~w~   47 (325)
                      .+.+++|||||++||++|..|.+.    |.+|+|+|+++.+||...
T Consensus        21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~   66 (576)
T PRK13977         21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLD   66 (576)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCcc
Confidence            357899999999999999999996    679999999999999543

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.66  E-value=3e-08  Score=93.34  Aligned_cols=39  Identities=28%  Similarity=0.399  Sum_probs=37.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg   44 (325)
                      .+++|+|||||+|||+||++|.+.|++|+|+|.++++||
T Consensus        14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG   52 (501)
T KOG0029|consen   14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG   52 (501)
T ss_pred             CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCc
Confidence            457999999999999999999999999999999999998

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.66  E-value=7.7e-08  Score=67.74  Aligned_cols=38  Identities=34%  Similarity=0.501  Sum_probs=33.5

Q ss_pred             eEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechh
Q 020533          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSRE  226 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~  226 (325)
                      +++|||+|.+|+|+|..|++.+.+||++.|++ +++|..
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~-~~~~~~   38 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSD-RLLPGF   38 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSS-SSSTTS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccc-hhhhhc
Confidence            68999999999999999999999999999999 343433

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK06175 L-aspartate oxidase; Provisional

Probab=98.65  E-value=2.9e-07  Score=86.02  Aligned_cols=38  Identities=21%  Similarity=0.421  Sum_probs=33.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg   44 (325)
                      ..+||+|||+|.+||+||..+. .|.+|+|+||.+..||
T Consensus         3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg   40 (433)
T PRK06175          3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNEC   40 (433)
T ss_pred             ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCC
Confidence            3579999999999999999984 7999999999887665

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.65  E-value=4.3e-07  Score=85.23  Aligned_cols=100  Identities=17%  Similarity=0.158  Sum_probs=75.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+..                               .  ..+++.++
T Consensus       157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~--~~~~~~~~  203 (438)
T PRK07251        157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILP-------------------------------R--EEPSVAAL  203 (438)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCC-------------------------------C--CCHHHHHH
Confidence            45899999999999999999999999999999875320                               0  12356677


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p  154 (325)
                      +.+.+++.++..  +++++|++++.++  +...+... +       .+ +.+|.||+|+|  ..|+..
T Consensus       204 ~~~~l~~~GI~i--~~~~~V~~i~~~~--~~v~v~~~-g-------~~-i~~D~viva~G--~~p~~~  256 (438)
T PRK07251        204 AKQYMEEDGITF--LLNAHTTEVKNDG--DQVLVVTE-D-------ET-YRFDALLYATG--RKPNTE  256 (438)
T ss_pred             HHHHHHHcCCEE--EcCCEEEEEEecC--CEEEEEEC-C-------eE-EEcCEEEEeeC--CCCCcc
Confidence            778888888654  8999999997643  34444322 1       56 89999999999  556543

>TIGR00551 nadB L-aspartate oxidase

Probab=98.65  E-value=6.6e-07  Score=85.04  Aligned_cols=134  Identities=17%  Similarity=0.139  Sum_probs=79.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCcc--CCCCCCce--------------------Eee-------
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW--KKYSYDRL--------------------RLH-------   57 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w--~~~~y~~~--------------------~~~-------   57 (325)
                      .+||+|||+|.+||+||..+++.|. |+|+||.+..+|.-  ....+...                    .++       
T Consensus         2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~   80 (488)
T TIGR00551         2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFV   80 (488)
T ss_pred             CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHH
Confidence            4699999999999999999999997 99999997655421  11000000                    000       


Q ss_pred             ---cC-------CCccCCCCCC-----C---C-CCC-C----CCCCHHHHHHHHHHHHHH-cCCCceeeeCeEEEEEEEc
Q 020533           58 ---LA-------KQFCQLPHLP-----F---P-SSY-P----MFVSRAQFIEHLDHYVSH-FNIGPSIRYQRSVESASYD  112 (325)
Q Consensus        58 ---~~-------~~~~~~~~~~-----~---~-~~~-~----~~~~~~~~~~yl~~~a~~-~~l~~~i~~~~~V~~i~~~  112 (325)
                         .+       ..-..|....     .   . ... +    ...+...+.+.|.+.+++ .++.  +++++.++++..+
T Consensus        81 ~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~--i~~~~~v~~l~~~  158 (488)
T TIGR00551        81 VSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIR--IIEGENALDLLIE  158 (488)
T ss_pred             HHhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcE--EEECeEeeeeecc
Confidence               00       0000010000     0   0 000 0    012456788888888876 4654  5999999998764


Q ss_pred             CCCCcEE-EEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533          113 EATNMWN-VKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (325)
Q Consensus       113 ~~~~~~~-v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~  150 (325)
                      +  +... +...+..    .... +.++.||+|||.++.
T Consensus       159 ~--g~v~Gv~~~~~~----~~~~-i~A~~VVlAtGG~~~  190 (488)
T TIGR00551       159 T--GRVVGVWVWNRE----TVET-CHADAVVLATGGAGK  190 (488)
T ss_pred             C--CEEEEEEEEECC----cEEE-EEcCEEEECCCcccC
Confidence            3  3332 4444421    2256 899999999998764

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.63  E-value=8.7e-07  Score=85.59  Aligned_cols=136  Identities=13%  Similarity=0.115  Sum_probs=80.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccC--CCCC-----------Cc--------e-----Eee---
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK--KYSY-----------DR--------L-----RLH---   57 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~--~~~y-----------~~--------~-----~~~---   57 (325)
                      .+||+|||+|.+||+||..+++.|.+|+|+||.+..+|...  ...+           +.        +     ..+   
T Consensus         5 ~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~~   84 (566)
T PRK06452          5 EYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVDQDA   84 (566)
T ss_pred             cCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCCHHH
Confidence            57999999999999999999999999999999875444211  0000           00        0     000   


Q ss_pred             -------cC---CCc--cCCCCCCCCCC-----------CC-----CCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEE
Q 020533           58 -------LA---KQF--CQLPHLPFPSS-----------YP-----MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESA  109 (325)
Q Consensus        58 -------~~---~~~--~~~~~~~~~~~-----------~~-----~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i  109 (325)
                             .+   ..+  +..++...++.           .+     .-.....+...|.+.+...++.  +++++.++++
T Consensus        85 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~--i~~~~~~~~L  162 (566)
T PRK06452         85 AELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTSGLNVD--FYNEWFSLDL  162 (566)
T ss_pred             HHHHHHHHHHHHHHHHHCCCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHHhCCCE--EEeCcEEEEE
Confidence                   00   000  00000000000           00     0113556777777777766654  5999999999


Q ss_pred             EEcCCCCcE-EEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533          110 SYDEATNMW-NVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (325)
Q Consensus       110 ~~~~~~~~~-~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~  149 (325)
                      ..++  +.. -|...+..++  +... +.++.||+|||.++
T Consensus       163 i~~~--g~v~Gv~~~~~~~g--~~~~-i~AkaVVLATGG~~  198 (566)
T PRK06452        163 VTDN--KKVVGIVAMQMKTL--TPFF-FKTKAVVLATGGMG  198 (566)
T ss_pred             EEEC--CEEEEEEEEECCCC--eEEE-EEeCeEEECCCccc
Confidence            7653  433 2444443222  3356 89999999999765

>PRK06370 mercuric reductase; Validated

Probab=98.63  E-value=7e-07  Score=84.39  Aligned_cols=104  Identities=17%  Similarity=0.176  Sum_probs=77.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+...                                 ...++.++
T Consensus       171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~---------------------------------~~~~~~~~  217 (463)
T PRK06370        171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR---------------------------------EDEDVAAA  217 (463)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc---------------------------------cCHHHHHH
Confidence            468999999999999999999999999999998754200                                 11356677


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p  154 (325)
                      +.+.+++.++..  +++++|.+++.++  +...+.+...+++    .+ +.+|.||+|+|  ..|+..
T Consensus       218 l~~~l~~~GV~i--~~~~~V~~i~~~~--~~~~v~~~~~~~~----~~-i~~D~Vi~A~G--~~pn~~  274 (463)
T PRK06370        218 VREILEREGIDV--RLNAECIRVERDG--DGIAVGLDCNGGA----PE-ITGSHILVAVG--RVPNTD  274 (463)
T ss_pred             HHHHHHhCCCEE--EeCCEEEEEEEcC--CEEEEEEEeCCCc----eE-EEeCEEEECcC--CCcCCC
Confidence            888888888654  9999999997654  3445554432211    57 89999999999  556543

>PRK08401 L-aspartate oxidase; Provisional

Probab=98.63  E-value=4.1e-07  Score=85.91  Aligned_cols=35  Identities=26%  Similarity=0.338  Sum_probs=32.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCY   42 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~   42 (325)
                      +||+|||||.+||++|..+++.|.+|+|+||.+..
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~   36 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKK   36 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            69999999999999999999999999999998643

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.63  E-value=1.9e-06  Score=81.69  Aligned_cols=105  Identities=15%  Similarity=0.147  Sum_probs=77.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+..                               .  ...++.+.
T Consensus       183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~--~d~~~~~~  229 (475)
T PRK06327        183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA-------------------------------A--ADEQVAKE  229 (475)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC-------------------------------c--CCHHHHHH
Confidence            36899999999999999999999999999999875320                               0  12356677


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p  154 (325)
                      +.+..++.++..  +.+++|.+++.++  +...+...++++   +... +.+|.|++|+|  ..|+.+
T Consensus       230 ~~~~l~~~gi~i--~~~~~v~~i~~~~--~~v~v~~~~~~g---~~~~-i~~D~vl~a~G--~~p~~~  287 (475)
T PRK06327        230 AAKAFTKQGLDI--HLGVKIGEIKTGG--KGVSVAYTDADG---EAQT-LEVDKLIVSIG--RVPNTD  287 (475)
T ss_pred             HHHHHHHcCcEE--EeCcEEEEEEEcC--CEEEEEEEeCCC---ceeE-EEcCEEEEccC--CccCCC
Confidence            777777777554  9999999997654  345555544322   2256 89999999999  566654

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.63  E-value=6.2e-07  Score=86.91  Aligned_cols=39  Identities=26%  Similarity=0.529  Sum_probs=36.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg   44 (325)
                      ..+||+|||+|++|+++|..++++|.+|+|+||.+..||
T Consensus         8 ~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG   46 (574)
T PRK12842          8 LTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGG   46 (574)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Confidence            468999999999999999999999999999999987776

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.62  E-value=3.5e-07  Score=84.70  Aligned_cols=96  Identities=16%  Similarity=0.136  Sum_probs=74.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|+.|+.+|..|.+.|.+|+++|+.+.+.+.                                ...+++.++
T Consensus       144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~--------------------------------~~~~~~~~~  191 (396)
T PRK09754        144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR--------------------------------NAPPPVQRY  191 (396)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh--------------------------------hcCHHHHHH
Confidence            468999999999999999999999999999998764211                                012356678


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                      +.+.+++.++..  +++++|++++. +  +.+.+.+.++       .+ +.+|.||+|+|.
T Consensus       192 l~~~l~~~GV~i--~~~~~V~~i~~-~--~~~~v~l~~g-------~~-i~aD~Vv~a~G~  239 (396)
T PRK09754        192 LLQRHQQAGVRI--LLNNAIEHVVD-G--EKVELTLQSG-------ET-LQADVVIYGIGI  239 (396)
T ss_pred             HHHHHHHCCCEE--EeCCeeEEEEc-C--CEEEEEECCC-------CE-EECCEEEECCCC
Confidence            888888888654  99999998865 2  3455665543       56 899999999994

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=98.62  E-value=4.1e-07  Score=84.75  Aligned_cols=33  Identities=21%  Similarity=0.442  Sum_probs=31.3

Q ss_pred             eEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            9 EVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      ||+|||||+.|+++|.+|++.|.+|+|+|+...
T Consensus         2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~   34 (416)
T PRK00711          2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG   34 (416)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence            799999999999999999999999999999753

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.62  E-value=4.5e-07  Score=82.47  Aligned_cols=134  Identities=17%  Similarity=0.300  Sum_probs=95.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhc-------------CCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQ-------------SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSY   74 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~-------------g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~   74 (325)
                      .+|+|+|||+.|..+|..|.+.             .++|+++|+.+.+-                      +        
T Consensus       156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL----------------------p--------  205 (405)
T COG1252         156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL----------------------P--------  205 (405)
T ss_pred             eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc----------------------c--------
Confidence            4799999999999999998753             13899999998753                      1        


Q ss_pred             CCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533           75 PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (325)
Q Consensus        75 ~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p  154 (325)
                         ...+++.+|.++..++.|+..  +.++.|++++.+.      |++.+++      .+ +.++.+|.|+|....|..-
T Consensus       206 ---~~~~~l~~~a~~~L~~~GV~v--~l~~~Vt~v~~~~------v~~~~g~------~~-I~~~tvvWaaGv~a~~~~~  267 (405)
T COG1252         206 ---MFPPKLSKYAERALEKLGVEV--LLGTPVTEVTPDG------VTLKDGE------EE-IPADTVVWAAGVRASPLLK  267 (405)
T ss_pred             ---CCCHHHHHHHHHHHHHCCCEE--EcCCceEEECCCc------EEEccCC------ee-EecCEEEEcCCCcCChhhh
Confidence               112477889999999999776  9999999998765      6666642      36 8999999999976666555


Q ss_pred             CCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCC
Q 020533          155 DIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNS  197 (325)
Q Consensus       155 ~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s  197 (325)
                      .+-|++.-     ..|+++......-.   ...+|-++|....
T Consensus       268 ~l~~~e~d-----r~Grl~V~~~L~~~---~~~~IFa~GD~A~  302 (405)
T COG1252         268 DLSGLETD-----RRGRLVVNPTLQVP---GHPDIFAAGDCAA  302 (405)
T ss_pred             hcChhhhc-----cCCCEEeCCCcccC---CCCCeEEEecccc
Confidence            54234421     04666655444321   1245888876543

>PLN02815 L-aspartate oxidase

Probab=98.61  E-value=8.7e-07  Score=85.71  Aligned_cols=37  Identities=19%  Similarity=0.319  Sum_probs=34.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg   44 (325)
                      .+||+|||+|.+||+||..+++.| +|+|+||.+..||
T Consensus        29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg   65 (594)
T PLN02815         29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHES   65 (594)
T ss_pred             ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCC
Confidence            579999999999999999999999 9999999886665

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.61  E-value=2.7e-07  Score=85.04  Aligned_cols=38  Identities=24%  Similarity=0.418  Sum_probs=34.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA   43 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~G   43 (325)
                      .++||+|||||++|+++|+.|++.|.+|+++|+....+
T Consensus         3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~   40 (387)
T COG0665           3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG   40 (387)
T ss_pred             CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCC
Confidence            45799999999999999999999999999999887543

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.61  E-value=1.6e-06  Score=82.06  Aligned_cols=105  Identities=17%  Similarity=0.153  Sum_probs=77.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++|+.+.+..                               .  ...++.++
T Consensus       172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~-------------------------------~--~d~~~~~~  218 (466)
T PRK07818        172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALP-------------------------------N--EDAEVSKE  218 (466)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCC-------------------------------c--cCHHHHHH
Confidence            36899999999999999999999999999998875320                               0  01356677


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p  154 (325)
                      +.+..++.++..  +++++|.+++.++  +...+.+...++   +..+ +.+|.||+|+|  ..|+..
T Consensus       219 l~~~l~~~gV~i--~~~~~v~~i~~~~--~~~~v~~~~~~g---~~~~-i~~D~vi~a~G--~~pn~~  276 (466)
T PRK07818        219 IAKQYKKLGVKI--LTGTKVESIDDNG--SKVTVTVSKKDG---KAQE-LEADKVLQAIG--FAPRVE  276 (466)
T ss_pred             HHHHHHHCCCEE--EECCEEEEEEEeC--CeEEEEEEecCC---CeEE-EEeCEEEECcC--cccCCC
Confidence            888888888655  9999999997643  445555542111   2257 89999999999  555543

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=98.60  E-value=1.3e-06  Score=84.53  Aligned_cols=36  Identities=25%  Similarity=0.379  Sum_probs=33.0

Q ss_pred             eEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533            9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg   44 (325)
                      ||+|||+|.+|++||..+++.|.+|+|+||....+|
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g   36 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRS   36 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCC
Confidence            799999999999999999999999999999875543

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.59  E-value=7.5e-07  Score=84.18  Aligned_cols=100  Identities=16%  Similarity=0.165  Sum_probs=77.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+..                                 ....++.++
T Consensus       175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~---------------------------------~~d~~~~~~  221 (461)
T PRK05249        175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS---------------------------------FLDDEISDA  221 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC---------------------------------cCCHHHHHH
Confidence            46899999999999999999999999999999875420                                 012356777


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~  153 (325)
                      +.+.+++.++..  +++++|++++.++  +.+.+++.++       .+ +.+|.|++|+|  ..|+.
T Consensus       222 l~~~l~~~gI~v--~~~~~v~~i~~~~--~~~~v~~~~g-------~~-i~~D~vi~a~G--~~p~~  274 (461)
T PRK05249        222 LSYHLRDSGVTI--RHNEEVEKVEGGD--DGVIVHLKSG-------KK-IKADCLLYANG--RTGNT  274 (461)
T ss_pred             HHHHHHHcCCEE--EECCEEEEEEEeC--CeEEEEECCC-------CE-EEeCEEEEeec--CCccc
Confidence            888888877554  8999999997654  4566665432       46 89999999999  45554

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=98.59  E-value=1.2e-07  Score=79.50  Aligned_cols=155  Identities=18%  Similarity=0.329  Sum_probs=91.4

Q ss_pred             eEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            9 EVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      +.+|||||++|.++|.+|+..  ..++.++-.++.+-.+                                ..-..+.+|
T Consensus         1 kfivvgggiagvscaeqla~~~psa~illitass~vksv--------------------------------tn~~~i~~y   48 (334)
T KOG2755|consen    1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSV--------------------------------TNYQKIGQY   48 (334)
T ss_pred             CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHH--------------------------------hhHHHHHHH
Confidence            368999999999999999986  4478888766532111                                011233444


Q ss_pred             HHHHHHHcCCCce------eeeCeEEEEE-EEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCc
Q 020533           87 LDHYVSHFNIGPS------IRYQRSVESA-SYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGL  159 (325)
Q Consensus        87 l~~~a~~~~l~~~------i~~~~~V~~i-~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~  159 (325)
                      ++.    |++...      -.|.+-+.++ .++.  ..-.++++++       .. +.|++|++|+|  ..|.+- ..|.
T Consensus        49 lek----fdv~eq~~~elg~~f~~~~~~v~~~~s--~ehci~t~~g-------~~-~ky~kKOG~tg--~kPklq-~E~~  111 (334)
T KOG2755|consen   49 LEK----FDVKEQNCHELGPDFRRFLNDVVTWDS--SEHCIHTQNG-------EK-LKYFKLCLCTG--YKPKLQ-VEGI  111 (334)
T ss_pred             HHh----cCccccchhhhcccHHHHHHhhhhhcc--ccceEEecCC-------ce-eeEEEEEEecC--CCccee-ecCC
Confidence            433    222110      0111111111 1222  2234666665       56 88999999999  566432 2222


Q ss_pred             cccccCCCCCccEEecCCCCCC-----CCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeec
Q 020533          160 CSFCSSATGTGEVIHSTQYKNG-----KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLS  224 (325)
Q Consensus       160 ~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p  224 (325)
                               ...++-..+..+.     ...+.|+|+|+|.|-+++|.+.++...  +|+|....+ |+..
T Consensus       112 ---------n~~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~El~yElk~~--nv~w~ikd~-~Isa  169 (334)
T KOG2755|consen  112 ---------NPKIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYELKIL--NVTWKIKDE-GISA  169 (334)
T ss_pred             ---------CceEEEEecCcHHHHHHHHHhhcceEEEEecCchhHHHHHHhhcc--eeEEEecch-hhhh
Confidence                     2234443333332     223579999999999999999888644  788888877 4443

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.59  E-value=1.7e-06  Score=83.75  Aligned_cols=39  Identities=21%  Similarity=0.507  Sum_probs=36.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg   44 (325)
                      .++||+|||+|.+||++|..+++.|.+|+|+||.+..||
T Consensus        10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG   48 (584)
T PRK12835         10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGG   48 (584)
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCc
Confidence            368999999999999999999999999999999987776

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.58  E-value=1.4e-06  Score=85.17  Aligned_cols=37  Identities=19%  Similarity=0.301  Sum_probs=34.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA   43 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~G   43 (325)
                      .+||+|||+|.+||+||..+++.|.+|+|+||.+..+
T Consensus         8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~   44 (626)
T PRK07803          8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGK   44 (626)
T ss_pred             eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence            5799999999999999999999999999999987554

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=98.58  E-value=2.9e-06  Score=82.29  Aligned_cols=41  Identities=17%  Similarity=0.529  Sum_probs=37.1

Q ss_pred             CCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCc
Q 020533            5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI   45 (325)
Q Consensus         5 ~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~   45 (325)
                      ...+||+|||+|++|+++|..+.++|.+|+|+|+++..||.
T Consensus        10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~   50 (581)
T PRK06134         10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGT   50 (581)
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCcc
Confidence            34689999999999999999999999999999999877763

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.58  E-value=1.5e-06  Score=82.11  Aligned_cols=105  Identities=14%  Similarity=0.217  Sum_probs=76.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|+.|+.+|..|.+.|.+|+++|+.+.+..                               .  ...++.++
T Consensus       174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~-------------------------------~--~d~~~~~~  220 (466)
T PRK06115        174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP-------------------------------G--TDTETAKT  220 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC-------------------------------C--CCHHHHHH
Confidence            46899999999999999999999999999999875320                               0  11356677


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~  153 (325)
                      +.+..++.++..  +++++|.+++.++  +.+.+.+....++  +... +.+|.|++|+|  ..|+.
T Consensus       221 l~~~l~~~gV~i--~~~~~V~~i~~~~--~~v~v~~~~~~~g--~~~~-i~~D~vi~a~G--~~pn~  278 (466)
T PRK06115        221 LQKALTKQGMKF--KLGSKVTGATAGA--DGVSLTLEPAAGG--AAET-LQADYVLVAIG--RRPYT  278 (466)
T ss_pred             HHHHHHhcCCEE--EECcEEEEEEEcC--CeEEEEEEEcCCC--ceeE-EEeCEEEEccC--Ccccc
Confidence            777888888655  9999999997643  3455555421111  1257 89999999999  45554

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=98.57  E-value=3.1e-06  Score=80.97  Aligned_cols=43  Identities=21%  Similarity=0.417  Sum_probs=37.7

Q ss_pred             CCCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (325)
Q Consensus         1 M~~~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg   44 (325)
                      |.+-...+||+|||+| +|+++|..+++.|.+|+|+||.+..||
T Consensus         1 ~~~~d~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg   43 (513)
T PRK12837          1 MSAWDEEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGG   43 (513)
T ss_pred             CCCCCCccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence            5555557899999999 999999999999999999999886554

>PRK06116 glutathione reductase; Validated

Probab=98.57  E-value=9.8e-07  Score=83.11  Aligned_cols=102  Identities=17%  Similarity=0.096  Sum_probs=77.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+..                               .  ...++.+.
T Consensus       167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~--~~~~~~~~  213 (450)
T PRK06116        167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLR-------------------------------G--FDPDIRET  213 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcc-------------------------------c--cCHHHHHH
Confidence            46899999999999999999999999999998875310                               0  11356777


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p  154 (325)
                      +.+.+++.++..  +++++|.+++.++ ++.+.+.+.++       .+ +.+|.||+|+|  ..|+..
T Consensus       214 l~~~L~~~GV~i--~~~~~V~~i~~~~-~g~~~v~~~~g-------~~-i~~D~Vv~a~G--~~p~~~  268 (450)
T PRK06116        214 LVEEMEKKGIRL--HTNAVPKAVEKNA-DGSLTLTLEDG-------ET-LTVDCLIWAIG--REPNTD  268 (450)
T ss_pred             HHHHHHHCCcEE--ECCCEEEEEEEcC-CceEEEEEcCC-------cE-EEeCEEEEeeC--CCcCCC
Confidence            888888888654  9999999998653 23356665543       56 89999999999  555544

>PRK09077 L-aspartate oxidase; Provisional

Probab=98.56  E-value=1.7e-06  Score=83.21  Aligned_cols=40  Identities=20%  Similarity=0.355  Sum_probs=35.0

Q ss_pred             CCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533            4 QAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (325)
Q Consensus         4 ~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg   44 (325)
                      +...+||+|||+|.+||++|..+++. .+|+|+||....||
T Consensus         5 ~~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g   44 (536)
T PRK09077          5 PEHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEG   44 (536)
T ss_pred             ccccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCC
Confidence            34568999999999999999999886 89999999886665

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=98.56  E-value=8.7e-08  Score=89.89  Aligned_cols=60  Identities=20%  Similarity=0.244  Sum_probs=41.6

Q ss_pred             CCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCC
Q 020533           78 VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET  148 (325)
Q Consensus        78 ~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~  148 (325)
                      ..+.++.++|.+.|.+.|+..  +.+ +|+.+..+++..-..|+++++       .+ +.+|++|-|+|..
T Consensus       151 lDR~~fd~~L~~~A~~~Gv~~--~~g-~V~~v~~~~~g~i~~v~~~~g-------~~-i~ad~~IDASG~~  210 (454)
T PF04820_consen  151 LDRAKFDQFLRRHAEERGVEV--IEG-TVVDVELDEDGRITAVRLDDG-------RT-IEADFFIDASGRR  210 (454)
T ss_dssp             EEHHHHHHHHHHHHHHTT-EE--EET--EEEEEE-TTSEEEEEEETTS-------EE-EEESEEEE-SGGG
T ss_pred             EeHHHHHHHHHHHHhcCCCEE--EeC-EEEEEEEcCCCCEEEEEECCC-------CE-EEEeEEEECCCcc
Confidence            478999999999999999764  444 688888776222234555553       67 9999999999953

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PTZ00367 squalene epoxidase; Provisional

Probab=98.56  E-value=8.8e-07  Score=85.08  Aligned_cols=35  Identities=34%  Similarity=0.437  Sum_probs=32.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ..+||+|||||++|+++|..|++.|++|+|+|+.+
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            35799999999999999999999999999999975

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.55  E-value=8.9e-07  Score=85.77  Aligned_cols=38  Identities=18%  Similarity=0.320  Sum_probs=33.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcC--CCeEEEecCCCCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYAS   44 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g--~~v~v~e~~~~~Gg   44 (325)
                      .+||+|||+|.+||+||..+++.|  .+|+|+||....||
T Consensus         3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg   42 (575)
T PRK05945          3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRS   42 (575)
T ss_pred             cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCch
Confidence            469999999999999999999874  79999999875453

>PRK07233 hypothetical protein; Provisional

Probab=98.55  E-value=2.4e-07  Score=86.73  Aligned_cols=41  Identities=22%  Similarity=0.422  Sum_probs=38.0

Q ss_pred             eEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC
Q 020533            9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY   49 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~   49 (325)
                      +|+|||||++||++|+.|.+.|++|+|+|+++++||.+...
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~   41 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASF   41 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeee
Confidence            58999999999999999999999999999999999976543

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.55  E-value=2.6e-06  Score=82.66  Aligned_cols=38  Identities=24%  Similarity=0.289  Sum_probs=33.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg   44 (325)
                      ..+||+|||+|.+||+||..+++. .+|+|+||....+|
T Consensus         4 ~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g   41 (583)
T PRK08205          4 HRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRS   41 (583)
T ss_pred             eeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCC
Confidence            357999999999999999999976 89999999865443

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.55  E-value=4e-06  Score=80.84  Aligned_cols=40  Identities=23%  Similarity=0.425  Sum_probs=36.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCcc
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW   46 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w   46 (325)
                      ..+||+|||+| +|+++|..+++.|.+|+|+||.+.+||+.
T Consensus        15 ~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~   54 (564)
T PRK12845         15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGST   54 (564)
T ss_pred             ceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcc
Confidence            46899999999 89999999999999999999998888843

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.54  E-value=4.5e-06  Score=80.56  Aligned_cols=44  Identities=23%  Similarity=0.480  Sum_probs=39.3

Q ss_pred             CCCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (325)
Q Consensus         1 M~~~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg   44 (325)
                      |......+||+|||+|++|+++|..++++|.+|+|+||.+.+||
T Consensus         1 ~~~~~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG   44 (557)
T PRK07843          1 MAMTVQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGG   44 (557)
T ss_pred             CCCCCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCc
Confidence            45555678999999999999999999999999999999987765

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=98.54  E-value=2.4e-06  Score=88.92  Aligned_cols=40  Identities=25%  Similarity=0.314  Sum_probs=36.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCc
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI   45 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~   45 (325)
                      ..+||+|||+|.+|++||..+++.|.+|+|+||.+..||.
T Consensus       408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~  447 (1167)
T PTZ00306        408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGN  447 (1167)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCc
Confidence            3589999999999999999999999999999999888774

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=98.53  E-value=2.9e-07  Score=91.91  Aligned_cols=113  Identities=13%  Similarity=0.324  Sum_probs=72.0

Q ss_pred             eEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCC---C-Cc-cCCCC---------------------CCceEeecCC
Q 020533            9 EVIMVGAGTSGLATAACLSLQ--SIPYVILERENCY---A-SI-WKKYS---------------------YDRLRLHLAK   60 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~~~---G-g~-w~~~~---------------------y~~~~~~~~~   60 (325)
                      +|+||||||+||++|..|++.  |++|+|+|+++..   | |. ...+.                     +....+....
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g   81 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHFKG   81 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEECC
Confidence            799999999999999999998  8999999998853   2 11 00110                     0011100000


Q ss_pred             CccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCe
Q 020533           61 QFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRF  140 (325)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~  140 (325)
                      ..  .  ......+ .-..+.++.+.|.+.+.+.++.  ++++++|++++.                     .. ..+|.
T Consensus        82 ~~--~--~~~g~~~-~~i~R~~L~~~L~e~a~~~GV~--i~~g~~v~~i~~---------------------~~-~~~D~  132 (765)
T PRK08255         82 RR--I--RSGGHGF-AGIGRKRLLNILQARCEELGVK--LVFETEVPDDQA---------------------LA-ADADL  132 (765)
T ss_pred             EE--E--EECCeeE-ecCCHHHHHHHHHHHHHHcCCE--EEeCCccCchhh---------------------hh-cCCCE
Confidence            00  0  0000001 1257899999999999998854  489988765421                     22 46899


Q ss_pred             EEEcccCCCC
Q 020533          141 LVVASGETTN  150 (325)
Q Consensus       141 vIiAtG~~~~  150 (325)
                      ||.|+|.+|.
T Consensus       133 VVgADG~~S~  142 (765)
T PRK08255        133 VIASDGLNSR  142 (765)
T ss_pred             EEEcCCCCHH
Confidence            9999997764

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=98.53  E-value=2.5e-06  Score=75.39  Aligned_cols=152  Identities=18%  Similarity=0.253  Sum_probs=112.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      +.+++|||||..||.++.--.+.|-+|+++|-.+.+|+...                                 .++...
T Consensus       211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD---------------------------------~Eisk~  257 (506)
T KOG1335|consen  211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMD---------------------------------GEISKA  257 (506)
T ss_pred             cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccC---------------------------------HHHHHH
Confidence            46899999999999999999999999999999998875421                                 277888


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCC----CCcc-c
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDI----RGLC-S  161 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~----~g~~-~  161 (325)
                      ++....+.++..  .++++|.+++.+. ++...+++++..++  +..+ ++||.+++|+|  .+|..-.+    -|++ .
T Consensus       258 ~qr~L~kQgikF--~l~tkv~~a~~~~-dg~v~i~ve~ak~~--k~~t-le~DvlLVsiG--RrP~t~GLgle~iGi~~D  329 (506)
T KOG1335|consen  258 FQRVLQKQGIKF--KLGTKVTSATRNG-DGPVEIEVENAKTG--KKET-LECDVLLVSIG--RRPFTEGLGLEKIGIELD  329 (506)
T ss_pred             HHHHHHhcCcee--EeccEEEEeeccC-CCceEEEEEecCCC--ceeE-EEeeEEEEEcc--CcccccCCChhhcccccc
Confidence            888888888776  9999999999886 34778888877665  4477 99999999999  56654432    1211 2


Q ss_pred             cccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhcc
Q 020533          162 FCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHA  209 (325)
Q Consensus       162 ~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~  209 (325)
                      +      .++++...++..    +--++-.||.-.-|--+|....+.|
T Consensus       330 ~------r~rv~v~~~f~t----~vP~i~~IGDv~~gpMLAhkAeeeg  367 (506)
T KOG1335|consen  330 K------RGRVIVNTRFQT----KVPHIYAIGDVTLGPMLAHKAEEEG  367 (506)
T ss_pred             c------ccceeccccccc----cCCceEEecccCCcchhhhhhhhhc
Confidence            3      555555443332    1236788888777776666665555

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=98.52  E-value=1.5e-06  Score=84.13  Aligned_cols=39  Identities=18%  Similarity=0.320  Sum_probs=34.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYAS   44 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~~~Gg   44 (325)
                      ..+||+|||+|.+||+||..+++.  |.+|+|+||....+|
T Consensus         3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g   43 (582)
T PRK09231          3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRS   43 (582)
T ss_pred             eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence            357999999999999999999987  479999999876554

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.52  E-value=3.9e-06  Score=79.32  Aligned_cols=103  Identities=17%  Similarity=0.246  Sum_probs=74.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+..                                 ....++.+.
T Consensus       169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~---------------------------------~~d~~~~~~  215 (460)
T PRK06292        169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP---------------------------------LEDPEVSKQ  215 (460)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc---------------------------------chhHHHHHH
Confidence            46899999999999999999999999999999875421                                 012356677


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p  154 (325)
                      +.+..++. +.  +++++++.+++.++. ....++..++     +..+ +.+|.|++|+|  ..|+..
T Consensus       216 ~~~~l~~~-I~--i~~~~~v~~i~~~~~-~~v~~~~~~~-----~~~~-i~~D~vi~a~G--~~p~~~  271 (460)
T PRK06292        216 AQKILSKE-FK--IKLGAKVTSVEKSGD-EKVEELEKGG-----KTET-IEADYVLVATG--RRPNTD  271 (460)
T ss_pred             HHHHHhhc-cE--EEcCCEEEEEEEcCC-ceEEEEEcCC-----ceEE-EEeCEEEEccC--CccCCC
Confidence            77777665 54  489999999976532 2333332222     1257 89999999999  566654

>PRK07846 mycothione reductase; Reviewed

Probab=98.51  E-value=3.4e-06  Score=79.41  Aligned_cols=100  Identities=18%  Similarity=0.199  Sum_probs=72.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+++|||+|+.|+.+|..|++.|.+|+++++.+.+..                               .  ...++.+.
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~-------------------------------~--~d~~~~~~  212 (451)
T PRK07846        166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR-------------------------------H--LDDDISER  212 (451)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc-------------------------------c--cCHHHHHH
Confidence            46899999999999999999999999999999875310                               0  11245555


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p  154 (325)
                      +.+..+ .+  .++++++++.+++.++  +...+.+.++       .+ +.+|.|++|+|  ..|+..
T Consensus       213 l~~l~~-~~--v~i~~~~~v~~i~~~~--~~v~v~~~~g-------~~-i~~D~vl~a~G--~~pn~~  265 (451)
T PRK07846        213 FTELAS-KR--WDVRLGRNVVGVSQDG--SGVTLRLDDG-------ST-VEADVLLVATG--RVPNGD  265 (451)
T ss_pred             HHHHHh-cC--eEEEeCCEEEEEEEcC--CEEEEEECCC-------cE-eecCEEEEEEC--CccCcc
Confidence            555443 34  4558999999997653  3455555432       56 89999999999  555544

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.51  E-value=1.5e-06  Score=81.66  Aligned_cols=100  Identities=17%  Similarity=0.155  Sum_probs=75.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+++|||+|+.|+.+|..|++.|.+|+++++.+.+..                               .  ...++.+.
T Consensus       166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~-------------------------------~--~d~~~~~~  212 (446)
T TIGR01424       166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILR-------------------------------G--FDDDMRAL  212 (446)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCc-------------------------------c--cCHHHHHH
Confidence            45899999999999999999999999999998875310                               0  11356677


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~  153 (325)
                      +.+.+++.++..  +++++|.+++..+  +...+++.++       .+ +.+|.||+|+|  ..|+.
T Consensus       213 l~~~l~~~gV~i--~~~~~v~~i~~~~--~~~~v~~~~g-------~~-i~~D~viva~G--~~pn~  265 (446)
T TIGR01424       213 LARNMEGRGIRI--HPQTSLTSITKTD--DGLKVTLSHG-------EE-IVADVVLFATG--RSPNT  265 (446)
T ss_pred             HHHHHHHCCCEE--EeCCEEEEEEEcC--CeEEEEEcCC-------cE-eecCEEEEeeC--CCcCC
Confidence            778888888654  9999999997643  3455665432       56 89999999999  45554

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=98.51  E-value=4.2e-06  Score=81.00  Aligned_cols=38  Identities=18%  Similarity=0.320  Sum_probs=33.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYAS   44 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~~~Gg   44 (325)
                      .+||+|||+|.+||+||..+++.  |.+|+|+||....++
T Consensus         3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~   42 (580)
T TIGR01176         3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRS   42 (580)
T ss_pred             ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence            57999999999999999999987  579999999886655

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.51  E-value=3.1e-06  Score=82.08  Aligned_cols=38  Identities=24%  Similarity=0.442  Sum_probs=34.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcC---CCeEEEecCCCCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQS---IPYVILERENCYAS   44 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g---~~v~v~e~~~~~Gg   44 (325)
                      .+||+|||+|.+||+||..+++.|   .+|+|+||....++
T Consensus         5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~   45 (577)
T PRK06069          5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRS   45 (577)
T ss_pred             ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCC
Confidence            579999999999999999999998   89999999886554

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=98.49  E-value=4.6e-07  Score=78.28  Aligned_cols=84  Identities=18%  Similarity=0.251  Sum_probs=60.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCC--ceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYD--RLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      +|++|||||++|+.+|..|+++|.+|.|+||++++||.+....-+  ++.++.           +..+ -.+.+...+.+
T Consensus         2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHk-----------YGpH-IFHT~~~~Vwd   69 (374)
T COG0562           2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHK-----------YGPH-IFHTDNKRVWD   69 (374)
T ss_pred             CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEee-----------ccCc-eeecCchHHHH
Confidence            699999999999999999999999999999999999976544221  222211           1100 12345678999


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEE
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESA  109 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i  109 (325)
                      |+.++.+-.      .+.++|..+
T Consensus        70 yv~~F~e~~------~Y~hrVla~   87 (374)
T COG0562          70 YVNQFTEFN------PYQHRVLAL   87 (374)
T ss_pred             HHhhhhhhh------hhccceeEE
Confidence            999988754      455666444

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=98.49  E-value=3.9e-06  Score=81.60  Aligned_cols=33  Identities=27%  Similarity=0.279  Sum_probs=30.8

Q ss_pred             EEEECCChHHHHHHHHHHhcCCCeEEEecCCCC
Q 020533           10 VIMVGAGTSGLATAACLSLQSIPYVILERENCY   42 (325)
Q Consensus        10 v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~   42 (325)
                      |+|||+|.+||+||..+++.|.+|+|+||.+.+
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~   33 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAP   33 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecCCC
Confidence            689999999999999999999999999998844

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK07395 L-aspartate oxidase; Provisional

Probab=98.49  E-value=1.2e-06  Score=84.25  Aligned_cols=39  Identities=26%  Similarity=0.553  Sum_probs=34.2

Q ss_pred             CCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533            5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (325)
Q Consensus         5 ~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg   44 (325)
                      +..+||+|||+|.+|++||..+. .|.+|+|+||.+..||
T Consensus         7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg   45 (553)
T PRK07395          7 PSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTS   45 (553)
T ss_pred             cccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCC
Confidence            34689999999999999999996 4999999999886665

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=98.49  E-value=4e-07  Score=86.05  Aligned_cols=50  Identities=20%  Similarity=0.329  Sum_probs=41.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhc----CCCeEEEecCCCCCCccCCCCCCceEe
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQ----SIPYVILERENCYASIWKKYSYDRLRL   56 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~----g~~v~v~e~~~~~Gg~w~~~~y~~~~~   56 (325)
                      ++||+|||||++||++|+.|.++    |++|+|+|+++++||..+.....+..+
T Consensus         2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~   55 (462)
T TIGR00562         2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLI   55 (462)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEE
Confidence            36899999999999999999998    999999999999999655433334333

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=98.48  E-value=1.3e-06  Score=78.28  Aligned_cols=36  Identities=39%  Similarity=0.511  Sum_probs=32.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA   43 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~G   43 (325)
                      .+|+|||||++||++|..|.++|++++|+|++..+-
T Consensus         3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R   38 (420)
T KOG2614|consen    3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDPR   38 (420)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccc
Confidence            579999999999999999999999999999876543

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=98.48  E-value=1.8e-07  Score=88.10  Aligned_cols=41  Identities=22%  Similarity=0.348  Sum_probs=36.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhcC--CCeEEEecCCCCCCccCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYASIWKK   48 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g--~~v~v~e~~~~~Gg~w~~   48 (325)
                      ++|+|||||++||+||+.|.+.|  ++|+|+|+++++||..+.
T Consensus         1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t   43 (451)
T PRK11883          1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQT   43 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEE
Confidence            37999999999999999999987  899999999999985443

>PRK08071 L-aspartate oxidase; Provisional

Probab=98.48  E-value=2e-06  Score=82.17  Aligned_cols=37  Identities=24%  Similarity=0.418  Sum_probs=33.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg   44 (325)
                      .+||+|||+|.+||+||..+++ |.+|+|+||.+..+|
T Consensus         3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g   39 (510)
T PRK08071          3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNS   39 (510)
T ss_pred             ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCC
Confidence            5799999999999999999976 899999999886555

>PLN02676 polyamine oxidase

Probab=98.48  E-value=2.7e-07  Score=87.44  Aligned_cols=50  Identities=32%  Similarity=0.454  Sum_probs=43.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCCCCCCccCCCCCCceE
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSI-PYVILERENCYASIWKKYSYDRLR   55 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~~~Gg~w~~~~y~~~~   55 (325)
                      ..+||+|||||++||++|+.|.++|. +|+|+|+++++||.+....+++..
T Consensus        25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g~~   75 (487)
T PLN02676         25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGVS   75 (487)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCCeE
Confidence            46799999999999999999999998 699999999999987766555443

>PLN02507 glutathione reductase

Probab=98.47  E-value=2.4e-06  Score=81.35  Aligned_cols=101  Identities=13%  Similarity=0.102  Sum_probs=76.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|+.|+.+|..|++.|.+|+|+++.+.+-.                               .  ...++.++
T Consensus       203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~-------------------------------~--~d~~~~~~  249 (499)
T PLN02507        203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLR-------------------------------G--FDDEMRAV  249 (499)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCc-------------------------------c--cCHHHHHH
Confidence            35899999999999999999999999999998874210                               0  12367777


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p  154 (325)
                      +.+..++.++..  +++++|.+++.++  +...+.+.++       .+ +.+|.|++|+|  ..|+..
T Consensus       250 l~~~l~~~GI~i--~~~~~V~~i~~~~--~~~~v~~~~g-------~~-i~~D~vl~a~G--~~pn~~  303 (499)
T PLN02507        250 VARNLEGRGINL--HPRTNLTQLTKTE--GGIKVITDHG-------EE-FVADVVLFATG--RAPNTK  303 (499)
T ss_pred             HHHHHHhCCCEE--EeCCEEEEEEEeC--CeEEEEECCC-------cE-EEcCEEEEeec--CCCCCC
Confidence            888888888654  9999999997643  4455554432       56 89999999999  455543

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.47  E-value=1.8e-06  Score=81.17  Aligned_cols=96  Identities=16%  Similarity=0.197  Sum_probs=72.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+...                              .  ..+++.++
T Consensus       149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~------------------------------~--~~~~~~~~  196 (444)
T PRK09564        149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPD------------------------------S--FDKEITDV  196 (444)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCch------------------------------h--cCHHHHHH
Confidence            468999999999999999999999999999987743100                              0  12467888


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                      +.+.+++.++..  +++++|.+++.+  .+.+.+...+        .+ +.+|.||+|+|.
T Consensus       197 l~~~l~~~gI~v--~~~~~v~~i~~~--~~~~~v~~~~--------~~-i~~d~vi~a~G~  244 (444)
T PRK09564        197 MEEELRENGVEL--HLNEFVKSLIGE--DKVEGVVTDK--------GE-YEADVVIVATGV  244 (444)
T ss_pred             HHHHHHHCCCEE--EcCCEEEEEecC--CcEEEEEeCC--------CE-EEcCEEEECcCC
Confidence            888888888654  899999998643  2333444332        46 899999999994

>PLN02576 protoporphyrinogen oxidase

Probab=98.46  E-value=3.2e-07  Score=87.50  Aligned_cols=42  Identities=29%  Similarity=0.402  Sum_probs=38.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhc-CCCeEEEecCCCCCCccC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQ-SIPYVILERENCYASIWK   47 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~-g~~v~v~e~~~~~Gg~w~   47 (325)
                      ..+||+|||||++||++|+.|.+. |++|+|+|+++++||...
T Consensus        11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~   53 (496)
T PLN02576         11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNIT   53 (496)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCcee
Confidence            457999999999999999999999 999999999999998543

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.46  E-value=3.5e-06  Score=79.79  Aligned_cols=104  Identities=13%  Similarity=0.135  Sum_probs=75.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++|+.+.+..                               .  ...++.++
T Consensus       174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~-------------------------------~--~d~~~~~~  220 (471)
T PRK06467        174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIP-------------------------------A--ADKDIVKV  220 (471)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCC-------------------------------c--CCHHHHHH
Confidence            36899999999999999999999999999999886420                               0  11356666


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p  154 (325)
                      +.+..++. +  .++++++|.+++..+  +...+++.+..+   +..+ +.+|.||+|+|  ..|+..
T Consensus       221 ~~~~l~~~-v--~i~~~~~v~~i~~~~--~~~~v~~~~~~~---~~~~-i~~D~vi~a~G--~~pn~~  277 (471)
T PRK06467        221 FTKRIKKQ-F--NIMLETKVTAVEAKE--DGIYVTMEGKKA---PAEP-QRYDAVLVAVG--RVPNGK  277 (471)
T ss_pred             HHHHHhhc-e--EEEcCCEEEEEEEcC--CEEEEEEEeCCC---cceE-EEeCEEEEeec--ccccCC
Confidence            66666554 3  458999999987654  445565544322   1257 89999999999  556543

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.46  E-value=3e-06  Score=79.69  Aligned_cols=103  Identities=15%  Similarity=0.036  Sum_probs=76.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|..|+.+|..|++.|.+|+++++.+.+..                               .  -.+++.+.
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~-------------------------------~--~d~~~~~~  212 (450)
T TIGR01421       166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR-------------------------------S--FDSMISET  212 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc-------------------------------c--cCHHHHHH
Confidence            36899999999999999999999999999999876420                               0  12356677


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p  154 (325)
                      +.+..++.++..  +.+++|++++.+. .+...+++.++     + .. +.+|.|++|+|  ..|+..
T Consensus       213 ~~~~l~~~gI~i--~~~~~v~~i~~~~-~~~~~v~~~~g-----~-~~-i~~D~vi~a~G--~~pn~~  268 (450)
T TIGR01421       213 ITEEYEKEGINV--HKLSKPVKVEKTV-EGKLVIHFEDG-----K-SI-DDVDELIWAIG--RKPNTK  268 (450)
T ss_pred             HHHHHHHcCCEE--EcCCEEEEEEEeC-CceEEEEECCC-----c-EE-EEcCEEEEeeC--CCcCcc
Confidence            777777778655  9999999997643 23345555432     1 46 89999999999  555543

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.46  E-value=2.5e-06  Score=80.66  Aligned_cols=101  Identities=17%  Similarity=0.180  Sum_probs=76.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+++|||+|..|+.+|..|++.|.+|+++++.+.+..                               .  ...++.++
T Consensus       177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~--~d~~~~~~  223 (466)
T PRK07845        177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLP-------------------------------G--EDADAAEV  223 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCC-------------------------------C--CCHHHHHH
Confidence            35899999999999999999999999999998875421                               0  12356677


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p  154 (325)
                      +.+..++.++..  +.++++.+++.++  +.+.+.+.++       .+ +.+|.|++|+|  ..|+..
T Consensus       224 l~~~L~~~gV~i--~~~~~v~~v~~~~--~~~~v~~~~g-------~~-l~~D~vl~a~G--~~pn~~  277 (466)
T PRK07845        224 LEEVFARRGMTV--LKRSRAESVERTG--DGVVVTLTDG-------RT-VEGSHALMAVG--SVPNTA  277 (466)
T ss_pred             HHHHHHHCCcEE--EcCCEEEEEEEeC--CEEEEEECCC-------cE-EEecEEEEeec--CCcCCC
Confidence            888888888655  8999999997654  4455665442       56 89999999999  555543

>PRK14727 putative mercuric reductase; Provisional

Probab=98.45  E-value=3.6e-06  Score=79.87  Aligned_cols=98  Identities=14%  Similarity=0.142  Sum_probs=73.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|+.|+.+|..|.+.|.+|+++++...+.                                  ...+++.+.
T Consensus       188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~----------------------------------~~d~~~~~~  233 (479)
T PRK14727        188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLF----------------------------------REDPLLGET  233 (479)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCC----------------------------------cchHHHHHH
Confidence            3689999999999999999999999999998753110                                  012356778


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~  153 (325)
                      +.+.+++.++..  +++++|.+++.++  +.+.+...+        .+ +.+|.||+|+|  ..|+.
T Consensus       234 l~~~L~~~GV~i--~~~~~V~~i~~~~--~~~~v~~~~--------g~-i~aD~VlvA~G--~~pn~  285 (479)
T PRK14727        234 LTACFEKEGIEV--LNNTQASLVEHDD--NGFVLTTGH--------GE-LRAEKLLISTG--RHANT  285 (479)
T ss_pred             HHHHHHhCCCEE--EcCcEEEEEEEeC--CEEEEEEcC--------Ce-EEeCEEEEccC--CCCCc
Confidence            888888888655  8899999997654  455555432        45 78999999999  44543

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=98.45  E-value=3.2e-07  Score=84.65  Aligned_cols=78  Identities=14%  Similarity=0.356  Sum_probs=55.6

Q ss_pred             eEEEECCChHHHHHHHHHHhcC--CCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            9 EVIMVGAGTSGLATAACLSLQS--IPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g--~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      +|+|||||++||++|++|.+++  .+++|||+.+++||.-+.-...+..++....              .|...   .+.
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~--------------~f~~~---~~~   64 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPH--------------HFLAR---KEE   64 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechh--------------heecc---hHH
Confidence            6999999999999999999999  8999999999999986655444444433211              22222   145


Q ss_pred             HHHHHHHcCCCceeeeC
Q 020533           87 LDHYVSHFNIGPSIRYQ  103 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~  103 (325)
                      ..+.+.+.|+...+..+
T Consensus        65 ~l~li~eLGled~l~~~   81 (444)
T COG1232          65 ILDLIKELGLEDKLLWN   81 (444)
T ss_pred             HHHHHHHhCcHHhhccC
Confidence            55666777877644433

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=98.45  E-value=3.3e-07  Score=87.29  Aligned_cols=40  Identities=28%  Similarity=0.388  Sum_probs=37.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK   47 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~   47 (325)
                      .||+|||||++||++|..|+++|++|+|+|+++.+||...
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~   41 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAG   41 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccc
Confidence            5899999999999999999999999999999999998443

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.44  E-value=3.2e-06  Score=79.39  Aligned_cols=99  Identities=19%  Similarity=0.223  Sum_probs=75.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+..                               .+  ..++.+.
T Consensus       158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~~--~~~~~~~  204 (441)
T PRK08010        158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLP-------------------------------RE--DRDIADN  204 (441)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCC-------------------------------Cc--CHHHHHH
Confidence            35899999999999999999999999999999875320                               00  1356777


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~  153 (325)
                      +.+.+++.++..  +++++|.+++.++  +.+.+...+        .+ +.+|.|++|+|  ..|+.
T Consensus       205 l~~~l~~~gV~v--~~~~~v~~i~~~~--~~v~v~~~~--------g~-i~~D~vl~a~G--~~pn~  256 (441)
T PRK08010        205 IATILRDQGVDI--ILNAHVERISHHE--NQVQVHSEH--------AQ-LAVDALLIASG--RQPAT  256 (441)
T ss_pred             HHHHHHhCCCEE--EeCCEEEEEEEcC--CEEEEEEcC--------Ce-EEeCEEEEeec--CCcCC
Confidence            888888888665  8999999997653  445554332        35 78999999999  45554

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.44  E-value=8.1e-06  Score=78.78  Aligned_cols=40  Identities=20%  Similarity=0.389  Sum_probs=36.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCc
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI   45 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~   45 (325)
                      .++||+|||+|.+|+++|..+++.|.+|+|+|+.+..||+
T Consensus         5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~   44 (557)
T PRK12844          5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGS   44 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCce
Confidence            3689999999999999999999999999999999877764

>PLN02268 probable polyamine oxidase

Probab=98.44  E-value=2.6e-07  Score=86.65  Aligned_cols=40  Identities=28%  Similarity=0.392  Sum_probs=36.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK   47 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~   47 (325)
                      .+|+|||||+|||+||+.|.+.|++|+|+|+++++||...
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~   40 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVH   40 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceee
Confidence            3799999999999999999999999999999999999543

>PRK14694 putative mercuric reductase; Provisional

Probab=98.43  E-value=9.8e-06  Score=76.73  Aligned_cols=98  Identities=16%  Similarity=0.219  Sum_probs=72.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++++...+.                                  ...+++.+.
T Consensus       178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~----------------------------------~~~~~~~~~  223 (468)
T PRK14694        178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVLS----------------------------------QEDPAVGEA  223 (468)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCC----------------------------------CCCHHHHHH
Confidence            3689999999999999999999999999998643110                                  012356677


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~  153 (325)
                      +.+..++.++..  ++++++.+++.++  +.+.+.+.+        .+ +.+|.||+|+|  ..|+.
T Consensus       224 l~~~l~~~GI~v--~~~~~v~~i~~~~--~~~~v~~~~--------~~-i~~D~vi~a~G--~~pn~  275 (468)
T PRK14694        224 IEAAFRREGIEV--LKQTQASEVDYNG--REFILETNA--------GT-LRAEQLLVATG--RTPNT  275 (468)
T ss_pred             HHHHHHhCCCEE--EeCCEEEEEEEcC--CEEEEEECC--------CE-EEeCEEEEccC--CCCCc
Confidence            788888888655  8999999987653  444444322        46 89999999999  45554

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=98.43  E-value=5.7e-07  Score=85.01  Aligned_cols=42  Identities=21%  Similarity=0.415  Sum_probs=36.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhc------CCCeEEEecCCCCCCccCCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQ------SIPYVILERENCYASIWKKY   49 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~------g~~v~v~e~~~~~Gg~w~~~   49 (325)
                      ++|+|||||++||++|+.|.+.      |.+|+|+|+++++||..+..
T Consensus         2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~   49 (463)
T PRK12416          2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSV   49 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEE
Confidence            4799999999999999999986      37999999999999965543

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=98.42  E-value=1e-05  Score=78.56  Aligned_cols=40  Identities=23%  Similarity=0.481  Sum_probs=37.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCcc
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW   46 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w   46 (325)
                      ++||+|||+|.+|+++|..++++|.+|+|+|+.+.+||..
T Consensus        16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~   55 (578)
T PRK12843         16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTT   55 (578)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc
Confidence            5799999999999999999999999999999998888754

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=98.42  E-value=8.1e-06  Score=80.12  Aligned_cols=37  Identities=19%  Similarity=0.338  Sum_probs=33.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA   43 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~G   43 (325)
                      .+||+|||+|.+||+||..+++.|.+|+|+|+.+..+
T Consensus         5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~   41 (657)
T PRK08626          5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKR   41 (657)
T ss_pred             eccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence            5799999999999999999999999999999877543

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=98.40  E-value=4e-06  Score=78.44  Aligned_cols=99  Identities=16%  Similarity=0.265  Sum_probs=73.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|++|+.+|..|++.|.+|+++++.+.+..                              +.  ...++.++
T Consensus       137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~------------------------------~~--~~~~~~~~  184 (427)
T TIGR03385       137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILN------------------------------KL--FDEEMNQI  184 (427)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCc------------------------------cc--cCHHHHHH
Confidence            36899999999999999999999999999998875310                              00  11356778


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~  153 (325)
                      +.+.+++.++..  +++++|.+++.++   .. +...++       .+ +.+|.||+|+|  ..|+.
T Consensus       185 ~~~~l~~~gV~v--~~~~~v~~i~~~~---~~-v~~~~g-------~~-i~~D~vi~a~G--~~p~~  235 (427)
T TIGR03385       185 VEEELKKHEINL--RLNEEVDSIEGEE---RV-KVFTSG-------GV-YQADMVILATG--IKPNS  235 (427)
T ss_pred             HHHHHHHcCCEE--EeCCEEEEEecCC---CE-EEEcCC-------CE-EEeCEEEECCC--ccCCH
Confidence            888888888665  8999999987542   22 344332       56 89999999999  44543

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.39  E-value=2.5e-06  Score=79.99  Aligned_cols=96  Identities=16%  Similarity=0.178  Sum_probs=73.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+++|||+|+.|+.+|..|++.|.+|+++++.+.+...                                 ..+++.+.
T Consensus       148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~---------------------------------~d~~~~~~  194 (438)
T PRK13512        148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL---------------------------------MDADMNQP  194 (438)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh---------------------------------cCHHHHHH
Confidence            358999999999999999999999999999998754210                                 11356677


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~  153 (325)
                      +.+..++.++..  +++++|.+++.    .  .+++.++       .. +.+|.|++|+|  ..|+.
T Consensus       195 l~~~l~~~gI~i--~~~~~v~~i~~----~--~v~~~~g-------~~-~~~D~vl~a~G--~~pn~  243 (438)
T PRK13512        195 ILDELDKREIPY--RLNEEIDAING----N--EVTFKSG-------KV-EHYDMIIEGVG--THPNS  243 (438)
T ss_pred             HHHHHHhcCCEE--EECCeEEEEeC----C--EEEECCC-------CE-EEeCEEEECcC--CCcCh
Confidence            788888888654  89999998852    1  3555443       46 88999999999  45543

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=98.39  E-value=5.9e-06  Score=76.58  Aligned_cols=98  Identities=18%  Similarity=0.259  Sum_probs=76.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHHH
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHL   87 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl   87 (325)
                      .+++|||+|+.|+.+|..|++.|++|+++|+.+.+++.-.                              .  +++.+.+
T Consensus       137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~------------------------------~--~~~~~~~  184 (415)
T COG0446         137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL------------------------------D--PEVAEEL  184 (415)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh------------------------------h--HHHHHHH
Confidence            6899999999999999999999999999999998764310                              0  4778889


Q ss_pred             HHHHHHcCCCceeeeCeEEEEEEEcCCCCcEE-EEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533           88 DHYVSHFNIGPSIRYQRSVESASYDEATNMWN-VKASNLLSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        88 ~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~-v~~~~~~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                      .+..+.+++..  ++++++.+++......... +.....       .. +.+|.+++++|.
T Consensus       185 ~~~l~~~gi~~--~~~~~~~~i~~~~~~~~~~~~~~~~~-------~~-~~~d~~~~~~g~  235 (415)
T COG0446         185 AELLEKYGVEL--LLGTKVVGVEGKGNTLVVERVVGIDG-------EE-IKADLVIIGPGE  235 (415)
T ss_pred             HHHHHHCCcEE--EeCCceEEEEcccCcceeeEEEEeCC-------cE-EEeeEEEEeecc
Confidence            99999998554  8999999998764211111 233332       56 899999999994

>TIGR03452 mycothione_red mycothione reductase

Probab=98.39  E-value=4.1e-06  Score=78.86  Aligned_cols=99  Identities=17%  Similarity=0.188  Sum_probs=72.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+..                               .  ...++.+.
T Consensus       169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~-------------------------------~--~d~~~~~~  215 (452)
T TIGR03452       169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR-------------------------------H--LDEDISDR  215 (452)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc-------------------------------c--cCHHHHHH
Confidence            46899999999999999999999999999999875320                               0  11245555


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~  153 (325)
                      +.+..+ .+  ..++++++|.+++.++  +...+++.++       .+ +.+|.|++|+|  ..|+.
T Consensus       216 l~~~~~-~g--I~i~~~~~V~~i~~~~--~~v~v~~~~g-------~~-i~~D~vl~a~G--~~pn~  267 (452)
T TIGR03452       216 FTEIAK-KK--WDIRLGRNVTAVEQDG--DGVTLTLDDG-------ST-VTADVLLVATG--RVPNG  267 (452)
T ss_pred             HHHHHh-cC--CEEEeCCEEEEEEEcC--CeEEEEEcCC-------CE-EEcCEEEEeec--cCcCC
Confidence            655443 35  4458999999997654  4455655432       46 89999999999  55554

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK13748 putative mercuric reductase; Provisional

Probab=98.38  E-value=4.9e-06  Score=80.64  Aligned_cols=99  Identities=15%  Similarity=0.151  Sum_probs=74.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++++...+.                                .  ...++.+.
T Consensus       270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~--------------------------------~--~d~~~~~~  315 (561)
T PRK13748        270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLFF--------------------------------R--EDPAIGEA  315 (561)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcccc--------------------------------c--cCHHHHHH
Confidence            4689999999999999999999999999999753210                                0  12356778


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p  154 (325)
                      +.+..++.++..  +++++|.+++.++  +.+.+...+        .+ +.+|.|++|+|  ..|+..
T Consensus       316 l~~~l~~~gI~i--~~~~~v~~i~~~~--~~~~v~~~~--------~~-i~~D~vi~a~G--~~pn~~  368 (561)
T PRK13748        316 VTAAFRAEGIEV--LEHTQASQVAHVD--GEFVLTTGH--------GE-LRADKLLVATG--RAPNTR  368 (561)
T ss_pred             HHHHHHHCCCEE--EcCCEEEEEEecC--CEEEEEecC--------Ce-EEeCEEEEccC--CCcCCC
Confidence            888888888665  8999999987653  445554432        35 89999999999  556543

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=98.38  E-value=4.4e-07  Score=82.39  Aligned_cols=43  Identities=26%  Similarity=0.417  Sum_probs=37.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCCCCCCccCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSI-PYVILERENCYASIWKK   48 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~~~Gg~w~~   48 (325)
                      ...+|||||||.|||+||.+|.+.|+ +++|+|..+++||.-+.
T Consensus        20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~t   63 (498)
T KOG0685|consen   20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHT   63 (498)
T ss_pred             CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEee
Confidence            34689999999999999999998876 89999999999995554

>TIGR02734 crtI_fam phytoene desaturase

Probab=98.38  E-value=4.2e-07  Score=86.81  Aligned_cols=38  Identities=29%  Similarity=0.421  Sum_probs=35.6

Q ss_pred             EEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccC
Q 020533           10 VIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK   47 (325)
Q Consensus        10 v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~   47 (325)
                      |+|||||++||+||..|++.|++|+|+|+++.+||...
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~   38 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAG   38 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceE
Confidence            68999999999999999999999999999999999544

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=98.36  E-value=9e-06  Score=77.15  Aligned_cols=101  Identities=14%  Similarity=0.062  Sum_probs=74.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHHH
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHL   87 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl   87 (325)
                      .+++|||+|+.|+.+|..|++.|.+|+++++. .+.                               +.  ...++.+++
T Consensus       181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l-------------------------------~~--~d~~~~~~l  226 (484)
T TIGR01438       181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILL-------------------------------RG--FDQDCANKV  226 (484)
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-ccc-------------------------------cc--cCHHHHHHH
Confidence            57999999999999999999999999999874 211                               00  123677788


Q ss_pred             HHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533           88 DHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (325)
Q Consensus        88 ~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~  153 (325)
                      .+..++.++..  ++++.+.+++..+  +...++..++...    .+ +.+|.|++|+|  ..|+.
T Consensus       227 ~~~L~~~gV~i--~~~~~v~~v~~~~--~~~~v~~~~~~~~----~~-i~~D~vl~a~G--~~pn~  281 (484)
T TIGR01438       227 GEHMEEHGVKF--KRQFVPIKVEQIE--AKVKVTFTDSTNG----IE-EEYDTVLLAIG--RDACT  281 (484)
T ss_pred             HHHHHHcCCEE--EeCceEEEEEEcC--CeEEEEEecCCcc----eE-EEeCEEEEEec--CCcCC
Confidence            88888888655  8999888887653  3444555443211    47 89999999999  45554

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>TIGR02730 carot_isom carotene isomerase

Probab=98.36  E-value=5.6e-07  Score=85.73  Aligned_cols=41  Identities=27%  Similarity=0.361  Sum_probs=37.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK   48 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~   48 (325)
                      +||+|||||++||++|..|+++|++|+|+||++.+||....
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~   41 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGY   41 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeE
Confidence            58999999999999999999999999999999999985444

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PLN02568 polyamine oxidase

Probab=98.35  E-value=6.5e-07  Score=85.62  Aligned_cols=42  Identities=21%  Similarity=0.349  Sum_probs=38.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcC-----CCeEEEecCCCCCCccCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQS-----IPYVILERENCYASIWKK   48 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g-----~~v~v~e~~~~~Gg~w~~   48 (325)
                      .+||+|||||++||++|+.|.+.|     ++|+|+|+++++||.+..
T Consensus         5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t   51 (539)
T PLN02568          5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINT   51 (539)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEE
Confidence            468999999999999999999887     899999999999997654

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=98.34  E-value=1.2e-06  Score=79.70  Aligned_cols=39  Identities=21%  Similarity=0.374  Sum_probs=37.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCc
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI   45 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~   45 (325)
                      ..+++|||||++||.||..|++.|+++.++|+++.+||.
T Consensus       124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGr  162 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGR  162 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCccccc
Confidence            357999999999999999999999999999999999986

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.34  E-value=4.8e-06  Score=83.72  Aligned_cols=103  Identities=15%  Similarity=0.144  Sum_probs=76.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+++|||+|+.|+.+|..|.+.|.+|+|+|+.+.+-.                                ..-..+..+.
T Consensus       145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~--------------------------------~~ld~~~~~~  192 (847)
T PRK14989        145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA--------------------------------EQLDQMGGEQ  192 (847)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh--------------------------------hhcCHHHHHH
Confidence            35799999999999999999999999999998875310                                0012356678


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~  153 (325)
                      +.+..++.++..  ++++.+.++..+.......+.+.++       .+ +.+|.||+|+|  ..|+.
T Consensus       193 l~~~L~~~GV~v--~~~~~v~~I~~~~~~~~~~v~~~dG-------~~-i~~D~Vv~A~G--~rPn~  247 (847)
T PRK14989        193 LRRKIESMGVRV--HTSKNTLEIVQEGVEARKTMRFADG-------SE-LEVDFIVFSTG--IRPQD  247 (847)
T ss_pred             HHHHHHHCCCEE--EcCCeEEEEEecCCCceEEEEECCC-------CE-EEcCEEEECCC--cccCc
Confidence            888888888665  9999999987543223344555543       56 89999999999  44543

>PTZ00058 glutathione reductase; Provisional

Probab=98.33  E-value=7.8e-06  Score=78.56  Aligned_cols=103  Identities=15%  Similarity=0.123  Sum_probs=76.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+..                               .  -.+++.+.
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~-------------------------------~--~d~~i~~~  283 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLR-------------------------------K--FDETIINE  283 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccc-------------------------------c--CCHHHHHH
Confidence            46899999999999999999999999999999875320                               0  11356677


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p  154 (325)
                      +.+..++.++..  +++++|.+++.++ .+...+...++  +    .+ +.+|.|++|+|  ..|+..
T Consensus       284 l~~~L~~~GV~i--~~~~~V~~I~~~~-~~~v~v~~~~~--~----~~-i~aD~VlvA~G--r~Pn~~  339 (561)
T PTZ00058        284 LENDMKKNNINI--ITHANVEEIEKVK-EKNLTIYLSDG--R----KY-EHFDYVIYCVG--RSPNTE  339 (561)
T ss_pred             HHHHHHHCCCEE--EeCCEEEEEEecC-CCcEEEEECCC--C----EE-EECCEEEECcC--CCCCcc
Confidence            777788888655  9999999997643 22344443321  1    57 89999999999  455543

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=98.33  E-value=1.5e-06  Score=80.27  Aligned_cols=132  Identities=16%  Similarity=0.128  Sum_probs=75.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecC----------CCCCCccCCCCC---C---ce-EeecCCCccCCCC--
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERE----------NCYASIWKKYSY---D---RL-RLHLAKQFCQLPH--   67 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~----------~~~Gg~w~~~~y---~---~~-~~~~~~~~~~~~~--   67 (325)
                      .+||+|||||.+|+.||...++.|.++.++--+          +.+||.-.....   +   ++ .........+|..  
T Consensus         4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN   83 (621)
T COG0445           4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLN   83 (621)
T ss_pred             CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhcc
Confidence            489999999999999999999999999888654          344443221100   0   00 0000111111111  


Q ss_pred             ---CCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEc
Q 020533           68 ---LPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVA  144 (325)
Q Consensus        68 ---~~~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiA  144 (325)
                         -|--...+.-.....+.+++++..+...--.  .+...|.++..++....+-|.+..+       .. +.|+.||++
T Consensus        84 ~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~--l~q~~v~dli~e~~~~v~GV~t~~G-------~~-~~a~aVVlT  153 (621)
T COG0445          84 SSKGPAVRAPRAQADKWLYRRAMKNELENQPNLH--LLQGEVEDLIVEEGQRVVGVVTADG-------PE-FHAKAVVLT  153 (621)
T ss_pred             CCCcchhcchhhhhhHHHHHHHHHHHHhcCCCce--ehHhhhHHHhhcCCCeEEEEEeCCC-------Ce-eecCEEEEe
Confidence               1111111222344455566666666543222  5666777776654222456666665       67 999999999


Q ss_pred             ccCC
Q 020533          145 SGET  148 (325)
Q Consensus       145 tG~~  148 (325)
                      ||.+
T Consensus       154 TGTF  157 (621)
T COG0445         154 TGTF  157 (621)
T ss_pred             eccc
Confidence            9965

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.33  E-value=7.9e-06  Score=77.46  Aligned_cols=101  Identities=14%  Similarity=0.095  Sum_probs=74.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHh---cCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSL---QSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF   83 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~---~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (325)
                      ..+++|||+|+.|+.+|..+..   .|.+|+|+|+.+.+..                               .  ..+++
T Consensus       187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~-------------------------------~--~d~~~  233 (486)
T TIGR01423       187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR-------------------------------G--FDSTL  233 (486)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc-------------------------------c--cCHHH
Confidence            4689999999999999976654   4899999999886420                               0  11367


Q ss_pred             HHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533           84 IEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (325)
Q Consensus        84 ~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~  153 (325)
                      .+.+.+..++.++..  ++++++.+++.++ ++...+.+.++       .+ +.+|.|++|+|  ..|+.
T Consensus       234 ~~~l~~~L~~~GI~i--~~~~~v~~i~~~~-~~~~~v~~~~g-------~~-i~~D~vl~a~G--~~Pn~  290 (486)
T TIGR01423       234 RKELTKQLRANGINI--MTNENPAKVTLNA-DGSKHVTFESG-------KT-LDVDVVMMAIG--RVPRT  290 (486)
T ss_pred             HHHHHHHHHHcCCEE--EcCCEEEEEEEcC-CceEEEEEcCC-------CE-EEcCEEEEeeC--CCcCc
Confidence            788888888888654  9999999997653 23344555432       46 89999999999  55554

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.33  E-value=5.1e-06  Score=71.94  Aligned_cols=137  Identities=16%  Similarity=0.157  Sum_probs=82.4

Q ss_pred             eEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC--CCCce--------Ee-ecCCCc---------------
Q 020533            9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY--SYDRL--------RL-HLAKQF---------------   62 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~--~y~~~--------~~-~~~~~~---------------   62 (325)
                      .|+|||+|.+||+++..+...|-.|+++|++..+||.--..  ...+.        .+ +.|..+               
T Consensus        11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~~e   90 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGVPE   90 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcccCCcHH
Confidence            59999999999999999999988899999999999843210  00000        00 000000               


Q ss_pred             ---------------------------cCCCCCCCC---CCCCCCCCHHHHHHHHHHHHHH----cCCCceeeeCeEEEE
Q 020533           63 ---------------------------CQLPHLPFP---SSYPMFVSRAQFIEHLDHYVSH----FNIGPSIRYQRSVES  108 (325)
Q Consensus        63 ---------------------------~~~~~~~~~---~~~~~~~~~~~~~~yl~~~a~~----~~l~~~i~~~~~V~~  108 (325)
                                                 ..+..+..|   ......|+.-++...|....++    ..-...|..+++|+.
T Consensus        91 Lm~~La~~S~~AvewL~~ef~lkld~la~lgGHSvpRTHr~s~plppgfei~~~L~~~l~k~as~~pe~~ki~~nskvv~  170 (477)
T KOG2404|consen   91 LMEKLAANSASAVEWLRGEFDLKLDLLAQLGGHSVPRTHRSSGPLPPGFEIVKALSTRLKKKASENPELVKILLNSKVVD  170 (477)
T ss_pred             HHHHHHhcCHHHHHHHhhhcccchHHHHHhcCCCCCcccccCCCCCCchHHHHHHHHHHHHhhhcChHHHhhhhcceeee
Confidence                                       000001111   1112344555666655544443    332345689999999


Q ss_pred             EEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533          109 ASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (325)
Q Consensus       109 i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~  150 (325)
                      +.++. ..-.-|++.+..+   +... +.++.||+|||.++.
T Consensus       171 il~n~-gkVsgVeymd~sg---ek~~-~~~~~VVlatGGf~y  207 (477)
T KOG2404|consen  171 ILRNN-GKVSGVEYMDASG---EKSK-IIGDAVVLATGGFGY  207 (477)
T ss_pred             eecCC-CeEEEEEEEcCCC---Cccc-eecCceEEecCCcCc
Confidence            98543 3445566665443   3356 789999999998764

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=98.32  E-value=9.6e-07  Score=80.40  Aligned_cols=41  Identities=27%  Similarity=0.381  Sum_probs=37.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK   48 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~   48 (325)
                      +||+|||||++|+++|..|++.|.+|+|+|+++.+||.+..
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~   42 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYD   42 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceee
Confidence            68999999999999999999999999999999999995443

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=98.31  E-value=2.5e-05  Score=76.34  Aligned_cols=110  Identities=16%  Similarity=0.133  Sum_probs=74.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|+.|+.+|..|.+.|.+|+++|+.+.+..                                 ....++.++
T Consensus       312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~---------------------------------~~d~eis~~  358 (659)
T PTZ00153        312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP---------------------------------LLDADVAKY  358 (659)
T ss_pred             CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccc---------------------------------cCCHHHHHH
Confidence            35899999999999999999999999999999886421                                 012356667


Q ss_pred             HHHHH-HHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCC---C-----ceeEEEEEeCeEEEcccCCCCCCCC
Q 020533           87 LDHYV-SHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSP---G-----REIEEYYSGRFLVVASGETTNPFTP  154 (325)
Q Consensus        87 l~~~a-~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~---~-----~~~~~~~~ad~vIiAtG~~~~p~~p  154 (325)
                      +.+.. ++.++.  ++.++.|.+++..+......+...+..++   +     .+..+ +.+|.|++|+|  ..|+..
T Consensus       359 l~~~ll~~~GV~--I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~-i~aD~VlvAtG--r~Pnt~  430 (659)
T PTZ00153        359 FERVFLKSKPVR--VHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKE-TYVDSCLVATG--RKPNTN  430 (659)
T ss_pred             HHHHHhhcCCcE--EEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceE-EEcCEEEEEEC--cccCCc
Confidence            76654 456654  49999999997654222244443321100   0     01137 89999999999  556543

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=98.30  E-value=2.1e-05  Score=76.32  Aligned_cols=33  Identities=24%  Similarity=0.463  Sum_probs=30.5

Q ss_pred             eEEEECCChHHHHHHHHHH----hcCCCeEEEecCCC
Q 020533            9 EVIMVGAGTSGLATAACLS----LQSIPYVILERENC   41 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~----~~g~~v~v~e~~~~   41 (325)
                      ||+|||+|.+||+||..++    +.|.+|+|+||...
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~   37 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL   37 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence            7999999999999999998    67999999999764

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.29  E-value=2.2e-05  Score=79.99  Aligned_cols=35  Identities=23%  Similarity=0.467  Sum_probs=32.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      .+||+|||+|.+||++|..+++.|.+|+|+||...
T Consensus        13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~   47 (897)
T PRK13800         13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV   47 (897)
T ss_pred             ecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            57999999999999999999999999999999874

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.28  E-value=1.3e-05  Score=76.34  Aligned_cols=99  Identities=17%  Similarity=0.027  Sum_probs=73.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHHH
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHL   87 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl   87 (325)
                      .+++|||+|+.|+.+|..|++.|.+|+++++...+.                                .  ...++.+++
T Consensus       183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~--------------------------------~--~d~~~~~~l  228 (499)
T PTZ00052        183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLR--------------------------------G--FDRQCSEKV  228 (499)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcccc--------------------------------c--CCHHHHHHH
Confidence            589999999999999999999999999998642110                                0  112566778


Q ss_pred             HHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533           88 DHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (325)
Q Consensus        88 ~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p  154 (325)
                      .+..++.++..  +.++.+.+++..+  +...+.+.++       .+ +.+|.|++|+|  ..|+..
T Consensus       229 ~~~l~~~GV~i--~~~~~v~~v~~~~--~~~~v~~~~g-------~~-i~~D~vl~a~G--~~pn~~  281 (499)
T PTZ00052        229 VEYMKEQGTLF--LEGVVPINIEKMD--DKIKVLFSDG-------TT-ELFDTVLYATG--RKPDIK  281 (499)
T ss_pred             HHHHHHcCCEE--EcCCeEEEEEEcC--CeEEEEECCC-------CE-EEcCEEEEeeC--CCCCcc
Confidence            88888888654  8999888887643  3345555433       46 78999999999  555543

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=98.28  E-value=1.3e-06  Score=80.66  Aligned_cols=41  Identities=27%  Similarity=0.447  Sum_probs=38.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC---ccCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS---IWKK   48 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg---~w~~   48 (325)
                      ++|+|+|||.+||++|+.|+++|++|+|+|+++.+||   .|+.
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~   44 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRD   44 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeec
Confidence            4799999999999999999999999999999999998   5654

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=98.28  E-value=2.6e-06  Score=78.45  Aligned_cols=36  Identities=22%  Similarity=0.323  Sum_probs=32.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA   43 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~G   43 (325)
                      .+|+|||||++|+.+|..|++.|++|+|||+++..+
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~   36 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKL   36 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence            379999999999999999999999999999877643

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.28  E-value=1.2e-05  Score=77.02  Aligned_cols=41  Identities=17%  Similarity=0.297  Sum_probs=36.2

Q ss_pred             CCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533            4 QAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (325)
Q Consensus         4 ~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg   44 (325)
                      +..++||+|||+|.+||.||..+++.|.+|+|+||....+|
T Consensus         3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg   43 (562)
T COG1053           3 TIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRG   43 (562)
T ss_pred             ccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCC
Confidence            34578999999999999999999999999999999875443

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=98.27  E-value=1.2e-06  Score=79.54  Aligned_cols=44  Identities=32%  Similarity=0.388  Sum_probs=40.1

Q ss_pred             CCCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (325)
Q Consensus         1 M~~~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg   44 (325)
                      |..+....||+|||||.+||++|..|.+.|++|+|+|.++++||
T Consensus         1 ~~~p~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GG   44 (450)
T COG1231           1 MTLPPKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGG   44 (450)
T ss_pred             CCCCCCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCc
Confidence            44456678999999999999999999999999999999999887

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=98.27  E-value=1.7e-05  Score=74.27  Aligned_cols=62  Identities=13%  Similarity=0.134  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533           80 RAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (325)
Q Consensus        80 ~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~  149 (325)
                      ...+.+.|.+.+++.++..  +++++|+++..+++.+ +.+-.......    .. +.++.||+|||.++
T Consensus       122 g~~l~~~L~~~a~~~Gv~i--~~~~~v~~l~~~~~~g-~v~gv~~~~~~----~~-i~ak~VIlAtGG~~  183 (432)
T TIGR02485       122 GKALTNALYSSAERLGVEI--RYGIAVDRIPPEAFDG-AHDGPLTTVGT----HR-ITTQALVLAAGGLG  183 (432)
T ss_pred             HHHHHHHHHHHHHHcCCEE--EeCCEEEEEEecCCCC-eEEEEEEcCCc----EE-EEcCEEEEcCCCcc
Confidence            4567888888899888655  9999999997653123 33322211111    56 89999999999654

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=98.26  E-value=6.7e-06  Score=82.46  Aligned_cols=101  Identities=11%  Similarity=0.092  Sum_probs=74.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+++|||+|+.|+.+|..|++.|.+|+|+|+.+.+-..                                .-..+..+.
T Consensus       140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~--------------------------------~ld~~~~~~  187 (785)
T TIGR02374       140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAK--------------------------------QLDQTAGRL  187 (785)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhh--------------------------------hcCHHHHHH
Confidence            358999999999999999999999999999987753100                                011245667


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~  153 (325)
                      +.+..++.++..  ++++.++++..+.  ....|++.++       .+ +.+|.||+|+|  ..|+.
T Consensus       188 l~~~l~~~GV~v--~~~~~v~~i~~~~--~~~~v~~~dG-------~~-i~~D~Vi~a~G--~~Pn~  240 (785)
T TIGR02374       188 LQRELEQKGLTF--LLEKDTVEIVGAT--KADRIRFKDG-------SS-LEADLIVMAAG--IRPND  240 (785)
T ss_pred             HHHHHHHcCCEE--EeCCceEEEEcCC--ceEEEEECCC-------CE-EEcCEEEECCC--CCcCc
Confidence            777788888665  9999888886432  3344565553       56 89999999999  44543

>PRK07512 L-aspartate oxidase; Provisional

Probab=98.25  E-value=1.2e-05  Score=76.87  Aligned_cols=34  Identities=29%  Similarity=0.407  Sum_probs=30.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      ..+||+|||+|.+||+||..++  +.+|+|+||.+.
T Consensus         8 ~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~   41 (513)
T PRK07512          8 LTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL   41 (513)
T ss_pred             CcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence            4689999999999999999996  569999999885

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=98.22  E-value=1.5e-05  Score=70.72  Aligned_cols=161  Identities=20%  Similarity=0.190  Sum_probs=86.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC-----------CCCCccCCC------CC--------CceEeecCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN-----------CYASIWKKY------SY--------DRLRLHLAK   60 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~-----------~~Gg~w~~~------~y--------~~~~~~~~~   60 (325)
                      ...||+|||||.+|.+.|..|++.|.+|.|+||.-           .+||...-.      +.        .+..+.-..
T Consensus        44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ifk~g  123 (509)
T KOG1298|consen   44 GAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIFKDG  123 (509)
T ss_pred             CcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEEeCC
Confidence            35799999999999999999999999999999863           334321100      00        011111010


Q ss_pred             --CccCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEE
Q 020533           61 --QFCQLPHLPFPSSYP--MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYY  136 (325)
Q Consensus        61 --~~~~~~~~~~~~~~~--~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~  136 (325)
                        ....++..+++.+..  .| ....+.+.|++.+....-..  ..+.+|.++-.++ .--.-|++++..++   ..+ .
T Consensus       124 k~v~~pyP~~~f~~d~~GrsF-hnGRFvq~lR~ka~slpNV~--~eeGtV~sLlee~-gvvkGV~yk~k~ge---e~~-~  195 (509)
T KOG1298|consen  124 KEVDLPYPLKNFPSDPSGRSF-HNGRFVQRLRKKAASLPNVR--LEEGTVKSLLEEE-GVVKGVTYKNKEGE---EVE-A  195 (509)
T ss_pred             ceeeccCCCcCCCCCccccee-eccHHHHHHHHHHhcCCCeE--EeeeeHHHHHhcc-CeEEeEEEecCCCc---eEE-E
Confidence              111222222222211  22 23456666777666542111  3444566654433 11123555554442   266 7


Q ss_pred             EeCeEEEcccCCCCCCC----CCCC-CccccccCCCCCccEEecCCCCC
Q 020533          137 SGRFLVVASGETTNPFT----PDIR-GLCSFCSSATGTGEVIHSTQYKN  180 (325)
Q Consensus       137 ~ad~vIiAtG~~~~p~~----p~~~-g~~~~~~~~~~~g~~~~~~~~~~  180 (325)
                      .|-.-|+|.|.+|+-+.    |.++ =...|      -|-++..++...
T Consensus       196 ~ApLTvVCDGcfSnlRrsL~~~~v~~V~S~f------VG~vl~N~~l~~  238 (509)
T KOG1298|consen  196 FAPLTVVCDGCFSNLRRSLCDPKVEEVPSYF------VGLVLKNCRLPA  238 (509)
T ss_pred             ecceEEEecchhHHHHHHhcCCcccccchhe------eeeeecCCCCCC
Confidence            88999999998874221    1233 12345      566666555543

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.22  E-value=2.8e-05  Score=72.62  Aligned_cols=92  Identities=16%  Similarity=0.178  Sum_probs=69.6

Q ss_pred             CeEEEECCChHHHHHHHHHHh--------------cCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCC
Q 020533            8 VEVIMVGAGTSGLATAACLSL--------------QSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSS   73 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~--------------~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~   73 (325)
                      .+|+|||+|+.|+.+|..|..              .+.+|+++++.+.+..                             
T Consensus       174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~-----------------------------  224 (424)
T PTZ00318        174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLG-----------------------------  224 (424)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccc-----------------------------
Confidence            389999999999999999875              3688999998875320                             


Q ss_pred             CCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCC
Q 020533           74 YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET  148 (325)
Q Consensus        74 ~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~  148 (325)
                        .  -.+++.+++.+..++.++..  +++++|.+++.+      .|.++++       .+ +.+|.+|+|+|..
T Consensus       225 --~--~~~~~~~~~~~~L~~~gV~v--~~~~~v~~v~~~------~v~~~~g-------~~-i~~d~vi~~~G~~  279 (424)
T PTZ00318        225 --S--FDQALRKYGQRRLRRLGVDI--RTKTAVKEVLDK------EVVLKDG-------EV-IPTGLVVWSTGVG  279 (424)
T ss_pred             --c--CCHHHHHHHHHHHHHCCCEE--EeCCeEEEEeCC------EEEECCC-------CE-EEccEEEEccCCC
Confidence              0  11356778888888888665  889999988632      2555543       56 8999999999953

>PRK10262 thioredoxin reductase; Provisional

Probab=98.18  E-value=2.8e-05  Score=69.88  Aligned_cols=105  Identities=23%  Similarity=0.294  Sum_probs=72.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|..|+.+|..|++.+.+|+++++.+.+.                                   ....+.+.
T Consensus       146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~-----------------------------------~~~~~~~~  190 (321)
T PRK10262        146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR-----------------------------------AEKILIKR  190 (321)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC-----------------------------------CCHHHHHH
Confidence            4689999999999999999999999999999886421                                   01134455


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~  153 (325)
                      +.+..++.++.  +.+++.+++++.++ .+.-.|++.+...++ +..+ +.+|.||+|+|  ..|+.
T Consensus       191 ~~~~l~~~gV~--i~~~~~v~~v~~~~-~~~~~v~~~~~~~~~-~~~~-i~~D~vv~a~G--~~p~~  250 (321)
T PRK10262        191 LMDKVENGNII--LHTNRTLEEVTGDQ-MGVTGVRLRDTQNSD-NIES-LDVAGLFVAIG--HSPNT  250 (321)
T ss_pred             HHhhccCCCeE--EEeCCEEEEEEcCC-ccEEEEEEEEcCCCC-eEEE-EECCEEEEEeC--CccCh
Confidence            56666666654  48899999987542 122235554432110 2257 89999999999  45543

>PLN02546 glutathione reductase

Probab=98.18  E-value=2.5e-05  Score=75.17  Aligned_cols=101  Identities=14%  Similarity=0.077  Sum_probs=73.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+...                                 ...++.++
T Consensus       252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~---------------------------------~d~~~~~~  298 (558)
T PLN02546        252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG---------------------------------FDEEVRDF  298 (558)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc---------------------------------cCHHHHHH
Confidence            468999999999999999999999999999988753210                                 12366677


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~  153 (325)
                      +.+..++.++..  +.++++.+++..+ ++...+...++       .. ..+|.|++|+|  ..|+.
T Consensus       299 l~~~L~~~GV~i--~~~~~v~~i~~~~-~g~v~v~~~~g-------~~-~~~D~Viva~G--~~Pnt  352 (558)
T PLN02546        299 VAEQMSLRGIEF--HTEESPQAIIKSA-DGSLSLKTNKG-------TV-EGFSHVMFATG--RKPNT  352 (558)
T ss_pred             HHHHHHHCCcEE--EeCCEEEEEEEcC-CCEEEEEECCe-------EE-EecCEEEEeec--cccCC
Confidence            888888888655  8999999987543 23334433221       33 45899999999  45554

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=98.17  E-value=2.2e-06  Score=79.91  Aligned_cols=43  Identities=19%  Similarity=0.271  Sum_probs=40.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK   48 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~   48 (325)
                      +.+||+|||+|.+|+.+|..|++.|.+|+++|+++..||.|+.
T Consensus         3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as   45 (443)
T PTZ00363          3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESAS   45 (443)
T ss_pred             CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCccccc
Confidence            4589999999999999999999999999999999999998774

>TIGR02731 phytoene_desat phytoene desaturase

Probab=98.16  E-value=2.4e-06  Score=80.52  Aligned_cols=37  Identities=27%  Similarity=0.401  Sum_probs=35.2

Q ss_pred             eEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCc
Q 020533            9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI   45 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~   45 (325)
                      +|+|||||++||++|..|.++|++|+|+|+++.+||.
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~   37 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGK   37 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Confidence            5899999999999999999999999999999999984

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=98.14  E-value=3.9e-05  Score=65.60  Aligned_cols=39  Identities=23%  Similarity=0.419  Sum_probs=34.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcC------CCeEEEecCCCCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQS------IPYVILERENCYAS   44 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g------~~v~v~e~~~~~Gg   44 (325)
                      ..++|+|+|||+.|.++|+.|.+++      ..++|||+..-.||
T Consensus         9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~g   53 (380)
T KOG2852|consen    9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGG   53 (380)
T ss_pred             CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccc
Confidence            4578999999999999999999987      68999999876554

>PLN02529 lysine-specific histone demethylase 1

Probab=98.13  E-value=3.6e-06  Score=82.71  Aligned_cols=42  Identities=36%  Similarity=0.328  Sum_probs=38.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK   47 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~   47 (325)
                      ..++|+|||||++||++|..|.+.|++|+|+|+++++||..+
T Consensus       159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~  200 (738)
T PLN02529        159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVY  200 (738)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCcee
Confidence            457999999999999999999999999999999998888543

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.10  E-value=5.7e-05  Score=66.87  Aligned_cols=95  Identities=23%  Similarity=0.274  Sum_probs=65.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|++|+.+|..|.+.+.+|+++++.+.+.                                   ..    ..
T Consensus       141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~-----------------------------------~~----~~  181 (300)
T TIGR01292       141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR-----------------------------------AE----KI  181 (300)
T ss_pred             CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC-----------------------------------cC----HH
Confidence            4689999999999999999999999999999875320                                   00    12


Q ss_pred             HHHHHHHc-CCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533           87 LDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        87 l~~~a~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                      +.+.+++. ++.  +++++++.+++.++  ....+++.+...+  +..+ +.+|.+|+|+|.
T Consensus       182 ~~~~l~~~~gv~--~~~~~~v~~i~~~~--~~~~v~~~~~~~g--~~~~-i~~D~vi~a~G~  236 (300)
T TIGR01292       182 LLDRLRKNPNIE--FLWNSTVKEIVGDN--KVEGVKIKNTVTG--EEEE-LKVDGVFIAIGH  236 (300)
T ss_pred             HHHHHHhCCCeE--EEeccEEEEEEccC--cEEEEEEEecCCC--ceEE-EEccEEEEeeCC
Confidence            33334444 654  48899999987543  2223444432211  2267 899999999993

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.10  E-value=4.8e-05  Score=72.91  Aligned_cols=100  Identities=20%  Similarity=0.169  Sum_probs=68.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|+.|+.+|..|+..+.+|+++++.+.+.                                   .    ...
T Consensus       352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~-----------------------------------~----~~~  392 (515)
T TIGR03140       352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK-----------------------------------A----DKV  392 (515)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC-----------------------------------h----hHH
Confidence            4689999999999999999999999999999776421                                   0    122


Q ss_pred             HHHHHHH-cCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533           87 LDHYVSH-FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (325)
Q Consensus        87 l~~~a~~-~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~  153 (325)
                      +.+.+++ .++.  +++++.+.++..++ .....|++.+..++  +... +.+|.|++|+|  ..|+.
T Consensus       393 l~~~l~~~~gV~--i~~~~~v~~i~~~~-~~v~~v~~~~~~~~--~~~~-i~~D~vi~a~G--~~Pn~  452 (515)
T TIGR03140       393 LQDKLKSLPNVD--ILTSAQTTEIVGDG-DKVTGIRYQDRNSG--EEKQ-LDLDGVFVQIG--LVPNT  452 (515)
T ss_pred             HHHHHhcCCCCE--EEECCeeEEEEcCC-CEEEEEEEEECCCC--cEEE-EEcCEEEEEeC--CcCCc
Confidence            3344443 4644  49999998886542 12223665543222  2257 89999999999  55554

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=98.05  E-value=4.6e-06  Score=72.95  Aligned_cols=46  Identities=22%  Similarity=0.312  Sum_probs=38.7

Q ss_pred             CCCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccC
Q 020533            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK   47 (325)
Q Consensus         1 M~~~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~   47 (325)
                      |..+....+|+|||+|++||+||..|.++ .+|++||.+.++||.-+
T Consensus         2 ~~~~~~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~   47 (447)
T COG2907           2 MNQPHPRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHAN   47 (447)
T ss_pred             CCCCCCCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccc
Confidence            44455667999999999999999999875 69999999999998544

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=98.01  E-value=4.1e-05  Score=69.18  Aligned_cols=130  Identities=14%  Similarity=0.105  Sum_probs=66.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCC--CeEEEecCCCCCCccCCCCCCce--EeecCCCccCCCCCCCCCC--------
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSI--PYVILERENCYASIWKKYSYDRL--RLHLAKQFCQLPHLPFPSS--------   73 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~--~v~v~e~~~~~Gg~w~~~~y~~~--~~~~~~~~~~~~~~~~~~~--------   73 (325)
                      ..++|+|||||.++..++..|.+.+.  +|+++-|+..+--.    .+...  .+-.|...-.|.  ..|+.        
T Consensus       189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~----d~s~f~ne~f~P~~v~~f~--~l~~~~R~~~l~~  262 (341)
T PF13434_consen  189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPM----DDSPFVNEIFSPEYVDYFY--SLPDEERRELLRE  262 (341)
T ss_dssp             --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB--------CCHHGGGSHHHHHHHH--TS-HHHHHHHHHH
T ss_pred             CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCC----ccccchhhhcCchhhhhhh--cCCHHHHHHHHHH
Confidence            45789999999999999999999875  78899887642100    00000  000000000000  00000        


Q ss_pred             CC--CC--CCHHHH---HH--HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEc
Q 020533           74 YP--MF--VSRAQF---IE--HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVA  144 (325)
Q Consensus        74 ~~--~~--~~~~~~---~~--yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiA  144 (325)
                      ..  .+  .+.+-+   .+  |-+.+..+-  ..+++.+++|++++..+ ++.|.+++++...+  +..+ +.+|.||+|
T Consensus       263 ~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~--~~~l~~~~~v~~~~~~~-~~~~~l~~~~~~~~--~~~~-~~~D~VilA  336 (341)
T PF13434_consen  263 QRHTNYGGIDPDLLEAIYDRLYEQRVSGRG--RLRLLPNTEVTSAEQDG-DGGVRLTLRHRQTG--EEET-LEVDAVILA  336 (341)
T ss_dssp             TGGGTSSEB-HHHHHHHHHHHHHHHHHT-----SEEETTEEEEEEEEES--SSEEEEEEETTT----EEE-EEESEEEE-
T ss_pred             hHhhcCCCCCHHHHHHHHHHHHHHHhcCCC--CeEEeCCCEEEEEEECC-CCEEEEEEEECCCC--CeEE-EecCEEEEc
Confidence            00  00  111111   11  112222222  35568899999999886 45899999986654  4477 899999999


Q ss_pred             ccC
Q 020533          145 SGE  147 (325)
Q Consensus       145 tG~  147 (325)
                      ||.
T Consensus       337 TGy  339 (341)
T PF13434_consen  337 TGY  339 (341)
T ss_dssp             --E
T ss_pred             CCc
Confidence            994

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=98.01  E-value=1.5e-05  Score=73.15  Aligned_cols=35  Identities=26%  Similarity=0.332  Sum_probs=32.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCY   42 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~   42 (325)
                      .||+|||||++|+.+|..|++.|++|+|+|+.+..
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~   37 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK   37 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence            58999999999999999999999999999987654

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=98.01  E-value=6.5e-05  Score=65.73  Aligned_cols=43  Identities=28%  Similarity=0.502  Sum_probs=36.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhc----CCCeEEEecCC---------CCCCccCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQ----SIPYVILEREN---------CYASIWKK   48 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~----g~~v~v~e~~~---------~~Gg~w~~   48 (325)
                      ..+||+|||+|-+|.+.|..|.++    |++|+|+|+++         .+||++..
T Consensus        85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQ  140 (509)
T KOG2853|consen   85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQ  140 (509)
T ss_pred             cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeee
Confidence            367999999999999999999764    79999999987         56776654

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=98.00  E-value=7.2e-06  Score=77.63  Aligned_cols=36  Identities=33%  Similarity=0.366  Sum_probs=34.7

Q ss_pred             eEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533            9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg   44 (325)
                      +|+|||||++||++|..|.+.|++|+|+|+++.+||
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG   36 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGG   36 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCc
Confidence            589999999999999999999999999999999998

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=98.00  E-value=1e-05  Score=80.00  Aligned_cols=42  Identities=31%  Similarity=0.339  Sum_probs=38.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK   47 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~   47 (325)
                      ...+|+|||||++||++|+.|.+.|++|+|+|+++++||...
T Consensus       237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~  278 (808)
T PLN02328        237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVK  278 (808)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCccc
Confidence            357899999999999999999999999999999999998543

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.96  E-value=9e-05  Score=71.07  Aligned_cols=99  Identities=19%  Similarity=0.150  Sum_probs=68.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|.+|+.+|..|+..+.+|+++++.+.+.                                   .    ..+
T Consensus       351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~-----------------------------------~----~~~  391 (517)
T PRK15317        351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELK-----------------------------------A----DQV  391 (517)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccc-----------------------------------c----cHH
Confidence            4689999999999999999999999999999876421                                   0    023


Q ss_pred             HHHHHHH-cCCCceeeeCeEEEEEEEcCCCCcE-EEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533           87 LDHYVSH-FNIGPSIRYQRSVESASYDEATNMW-NVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (325)
Q Consensus        87 l~~~a~~-~~l~~~i~~~~~V~~i~~~~~~~~~-~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~  153 (325)
                      +.+.... .++  .+++++.+.++..++  +.. .+++.+..++  +..+ +.+|.|++|+|  ..|+.
T Consensus       392 l~~~l~~~~gI--~i~~~~~v~~i~~~~--g~v~~v~~~~~~~g--~~~~-i~~D~v~~~~G--~~p~~  451 (517)
T PRK15317        392 LQDKLRSLPNV--TIITNAQTTEVTGDG--DKVTGLTYKDRTTG--EEHH-LELEGVFVQIG--LVPNT  451 (517)
T ss_pred             HHHHHhcCCCc--EEEECcEEEEEEcCC--CcEEEEEEEECCCC--cEEE-EEcCEEEEeEC--CccCc
Confidence            3333333 354  459999999987542  322 3555543322  3357 89999999999  44543

>PLN02487 zeta-carotene desaturase

Probab=97.95  E-value=1.1e-05  Score=77.52  Aligned_cols=40  Identities=28%  Similarity=0.284  Sum_probs=37.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCcc
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW   46 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w   46 (325)
                      +++|+|||||++||++|..|.+.|++|+|+|+++.+||.+
T Consensus        75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~  114 (569)
T PLN02487         75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKV  114 (569)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCce
Confidence            3599999999999999999999999999999999998844

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=97.91  E-value=1.4e-05  Score=71.75  Aligned_cols=43  Identities=26%  Similarity=0.348  Sum_probs=36.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCe--EEEecCCCCCCccCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPY--VILERENCYASIWKK   48 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v--~v~e~~~~~Gg~w~~   48 (325)
                      ...+|+|+|||++||++|++|++++.++  ++||+.+++||-.+.
T Consensus        10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS   54 (491)
T KOG1276|consen   10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRS   54 (491)
T ss_pred             ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeee
Confidence            3579999999999999999999997754  669999999995443

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=97.90  E-value=0.00023  Score=65.13  Aligned_cols=92  Identities=13%  Similarity=0.134  Sum_probs=64.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHh----cC--CCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCH
Q 020533            7 GVEVIMVGAGTSGLATAACLSL----QS--IPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSR   80 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~----~g--~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (325)
                      ..+|+|||+|++|+.+|..|.+    .|  .+|+++ ..+.+.                               +  ...
T Consensus       145 ~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l-------------------------------~--~~~  190 (364)
T TIGR03169       145 TKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLL-------------------------------P--GFP  190 (364)
T ss_pred             CceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCccc-------------------------------c--cCC
Confidence            3589999999999999999975    34  478888 332211                               0  011


Q ss_pred             HHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCC
Q 020533           81 AQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET  148 (325)
Q Consensus        81 ~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~  148 (325)
                      .++.+.+.+.+++.++..  +.++++.+++.    +  .+.+.++       .+ +.+|.||+|+|..
T Consensus       191 ~~~~~~~~~~l~~~gV~v--~~~~~v~~i~~----~--~v~~~~g-------~~-i~~D~vi~a~G~~  242 (364)
T TIGR03169       191 AKVRRLVLRLLARRGIEV--HEGAPVTRGPD----G--ALILADG-------RT-LPADAILWATGAR  242 (364)
T ss_pred             HHHHHHHHHHHHHCCCEE--EeCCeeEEEcC----C--eEEeCCC-------CE-EecCEEEEccCCC
Confidence            246677788888888665  89999988742    2  3555443       56 8999999999943

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PLN02612 phytoene desaturase

Probab=97.89  E-value=1.7e-05  Score=76.72  Aligned_cols=39  Identities=28%  Similarity=0.454  Sum_probs=36.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg   44 (325)
                      .+.+|+|||||++||++|..|.+.|++++|+|+++.+||
T Consensus        92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG  130 (567)
T PLN02612         92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGG  130 (567)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCC
Confidence            357899999999999999999999999999999998888

>PLN03000 amine oxidase

Probab=97.89  E-value=2e-05  Score=78.23  Aligned_cols=44  Identities=30%  Similarity=0.274  Sum_probs=40.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY   49 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~   49 (325)
                      ...+|+|||||++||.+|..|.+.|++|+|+|+++++||.+...
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~  226 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTK  226 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCccee
Confidence            35799999999999999999999999999999999999966543

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=97.88  E-value=1.8e-05  Score=76.36  Aligned_cols=40  Identities=35%  Similarity=0.482  Sum_probs=36.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC--CCCCc
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN--CYASI   45 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~--~~Gg~   45 (325)
                      ..+||+|||+|.+||+||..+++.|.+|+|+||.+  ..||.
T Consensus         3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~   44 (549)
T PRK12834          3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQ   44 (549)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCc
Confidence            35899999999999999999999999999999998  66663

>TIGR02462 pyranose_ox pyranose oxidase

Probab=97.87  E-value=1.8e-05  Score=75.43  Aligned_cols=40  Identities=15%  Similarity=0.150  Sum_probs=38.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK   47 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~   47 (325)
                      +||+|||+||+|+.+|+.|++.|++|++||+....|+.|-
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~   40 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKI   40 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCcc
Confidence            6899999999999999999999999999999999998884

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=97.86  E-value=0.00018  Score=66.27  Aligned_cols=33  Identities=24%  Similarity=0.468  Sum_probs=30.7

Q ss_pred             eEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC
Q 020533            9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCY   42 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~   42 (325)
                      ||+|||+|.+||++|..|.+. ++|+|+-|.+.-
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~   41 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLG   41 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCC
Confidence            899999999999999999998 999999998744

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=97.82  E-value=0.00016  Score=66.10  Aligned_cols=107  Identities=20%  Similarity=0.244  Sum_probs=81.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ...|+++|+|..|+.+|..|...+.+|+++++.+..                           ++.     .-.+++.+.
T Consensus       213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~---------------------------~~~-----lf~~~i~~~  260 (478)
T KOG1336|consen  213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWL---------------------------LPR-----LFGPSIGQF  260 (478)
T ss_pred             CceEEEECchHHHHHHHHHHHhcCceEEEEccCccc---------------------------hhh-----hhhHHHHHH
Confidence            457999999999999999999999999999998742                           010     123467777


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIR  157 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~  157 (325)
                      ..++.++.++..  +.++.+.+++-++....-.|.+.++       .+ +.+|.||+++|  ..|+.+.+.
T Consensus       261 ~~~y~e~kgVk~--~~~t~~s~l~~~~~Gev~~V~l~dg-------~~-l~adlvv~GiG--~~p~t~~~~  319 (478)
T KOG1336|consen  261 YEDYYENKGVKF--YLGTVVSSLEGNSDGEVSEVKLKDG-------KT-LEADLVVVGIG--IKPNTSFLE  319 (478)
T ss_pred             HHHHHHhcCeEE--EEecceeecccCCCCcEEEEEeccC-------CE-eccCeEEEeec--ccccccccc
Confidence            888888888655  9999999988776433344555554       67 99999999999  667766554

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.79  E-value=0.00011  Score=67.16  Aligned_cols=35  Identities=20%  Similarity=0.399  Sum_probs=30.9

Q ss_pred             CCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecC
Q 020533            5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERE   39 (325)
Q Consensus         5 ~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~   39 (325)
                      ...+||+|||||.+|..+|...++.|.+.+++-.+
T Consensus        26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~   60 (679)
T KOG2311|consen   26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN   60 (679)
T ss_pred             CCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence            34689999999999999999999999998888653

>PLN02976 amine oxidase

Probab=97.79  E-value=3.1e-05  Score=79.84  Aligned_cols=43  Identities=28%  Similarity=0.348  Sum_probs=39.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY   49 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~   49 (325)
                      .++|+|||||++|+++|..|.+.|++|+|||+++.+||.|...
T Consensus       693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~  735 (1713)
T PLN02976        693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTD  735 (1713)
T ss_pred             CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeec
Confidence            4789999999999999999999999999999999999977653

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=97.78  E-value=0.00019  Score=65.30  Aligned_cols=58  Identities=19%  Similarity=0.413  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533           81 AQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (325)
Q Consensus        81 ~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~  149 (325)
                      .++.+-+.++.+..|...  +|+++|..++..+ .....|.+.++       .+ +.+|+||+|.|+.+
T Consensus       173 ~~vvkni~~~l~~~G~ei--~f~t~VeDi~~~~-~~~~~v~~~~g-------~~-i~~~~vvlA~Grsg  230 (486)
T COG2509         173 PKVVKNIREYLESLGGEI--RFNTEVEDIEIED-NEVLGVKLTKG-------EE-IEADYVVLAPGRSG  230 (486)
T ss_pred             HHHHHHHHHHHHhcCcEE--EeeeEEEEEEecC-CceEEEEccCC-------cE-EecCEEEEccCcch
Confidence            567777888899998665  9999999998865 22344555554       67 99999999999754

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.76  E-value=0.0014  Score=61.74  Aligned_cols=34  Identities=21%  Similarity=0.310  Sum_probs=31.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ..+|+|||+|..|+-+|..|.+.|.+|+++++.+
T Consensus       272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~  305 (449)
T TIGR01316       272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT  305 (449)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence            4689999999999999999999999999999875

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=97.74  E-value=0.00029  Score=61.20  Aligned_cols=38  Identities=39%  Similarity=0.626  Sum_probs=34.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYA   43 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~~~G   43 (325)
                      ..+|++|||||+.|++.|+.|.-+  +.+|.|+|+...++
T Consensus        47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la   86 (453)
T KOG2665|consen   47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA   86 (453)
T ss_pred             ccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence            468999999999999999999887  88999999987554

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.73  E-value=0.00065  Score=61.90  Aligned_cols=34  Identities=26%  Similarity=0.352  Sum_probs=30.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCC-eEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIP-YVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~-v~v~e~~~   40 (325)
                      ..+|+|||+|..|+.+|..|.+.|.+ |+|+++.+
T Consensus       172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~  206 (352)
T PRK12770        172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT  206 (352)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence            35899999999999999999999997 99998765

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=97.70  E-value=3.6e-05  Score=68.24  Aligned_cols=34  Identities=29%  Similarity=0.387  Sum_probs=29.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhcC-CCeEEEecCCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQS-IPYVILERENC   41 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g-~~v~v~e~~~~   41 (325)
                      ||++|||+|++|..+|.+|++.+ .+|+|+|+.+.
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~   35 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR   35 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence            69999999999999999999997 69999999975

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.70  E-value=5e-05  Score=70.22  Aligned_cols=41  Identities=15%  Similarity=0.300  Sum_probs=36.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCcc
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW   46 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w   46 (325)
                      ..+||+|||||..|-.+|....-+|+++.++|+++...|+-
T Consensus        66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTS  106 (680)
T KOG0042|consen   66 HEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTS  106 (680)
T ss_pred             CcccEEEECCCccCcceeehhhcccceeEEEecccccCCcc
Confidence            35899999999999999999999999999999999666643

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=97.70  E-value=0.00014  Score=68.88  Aligned_cols=61  Identities=13%  Similarity=0.051  Sum_probs=47.4

Q ss_pred             CCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533           77 FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (325)
Q Consensus        77 ~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~  149 (325)
                      .....-+.+.|...|...|..+  ..++.|+++.... ++.|.|++..+        . +.+.++|.|+|.|.
T Consensus       183 ~~DP~~lC~ala~~A~~~GA~v--iE~cpV~~i~~~~-~~~~gVeT~~G--------~-iet~~~VNaaGvWA  243 (856)
T KOG2844|consen  183 VMDPAGLCQALARAASALGALV--IENCPVTGLHVET-DKFGGVETPHG--------S-IETECVVNAAGVWA  243 (856)
T ss_pred             ccCHHHHHHHHHHHHHhcCcEE--EecCCcceEEeec-CCccceeccCc--------c-eecceEEechhHHH
Confidence            3455677788888899999665  9999999996643 46677887764        4 88999999999764

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.70  E-value=0.00013  Score=69.28  Aligned_cols=34  Identities=26%  Similarity=0.483  Sum_probs=31.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ..+|+|||+|.+|+++|..|.++|++|+++|+.+
T Consensus        16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~   49 (480)
T PRK01438         16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD   49 (480)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4589999999999999999999999999999775

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=97.67  E-value=0.0017  Score=60.35  Aligned_cols=41  Identities=24%  Similarity=0.256  Sum_probs=35.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhc----CCCeEEEecCCCCCCccC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQ----SIPYVILERENCYASIWK   47 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~----g~~v~v~e~~~~~Gg~w~   47 (325)
                      .++.=|||+|+++|++|..|.+.    |-+|.|+|+.+..||...
T Consensus         2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsld   46 (500)
T PF06100_consen    2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLD   46 (500)
T ss_pred             CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCccc
Confidence            35788999999999999999986    459999999998888554

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=97.65  E-value=0.00024  Score=61.78  Aligned_cols=37  Identities=24%  Similarity=0.337  Sum_probs=31.4

Q ss_pred             CCCCeEEEECCChHHHHHHHHHHhc-CC-CeEEEecCCC
Q 020533            5 AAGVEVIMVGAGTSGLATAACLSLQ-SI-PYVILERENC   41 (325)
Q Consensus         5 ~~~~~v~IIGaG~~Gl~~a~~L~~~-g~-~v~v~e~~~~   41 (325)
                      +.+++|+|||||.+|+.+|..+.++ +- +|.|+|..+.
T Consensus        37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~   75 (446)
T KOG3851|consen   37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED   75 (446)
T ss_pred             ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence            3568999999999999999999875 44 8999998763

>PRK12831 putative oxidoreductase; Provisional

Probab=97.60  E-value=0.0028  Score=59.93  Aligned_cols=34  Identities=24%  Similarity=0.294  Sum_probs=31.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ..+|+|||+|..|+-+|..|.+.|.+|+++++.+
T Consensus       281 gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~  314 (464)
T PRK12831        281 GKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS  314 (464)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence            4689999999999999999999999999998765

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.58  E-value=0.00079  Score=65.17  Aligned_cols=35  Identities=23%  Similarity=0.391  Sum_probs=32.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      ..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.
T Consensus       143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~  177 (555)
T TIGR03143       143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD  177 (555)
T ss_pred             CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence            46899999999999999999999999999998864

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=97.50  E-value=0.0065  Score=57.56  Aligned_cols=35  Identities=14%  Similarity=0.224  Sum_probs=31.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~~   41 (325)
                      .++++|||+|..|+.+|..+.+.|. +|+|+++.+.
T Consensus       282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~  317 (467)
T TIGR01318       282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDE  317 (467)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCc
Confidence            4689999999999999999999996 7999998763

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.46  E-value=0.0052  Score=61.78  Aligned_cols=34  Identities=24%  Similarity=0.368  Sum_probs=31.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCC-eEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIP-YVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~-v~v~e~~~   40 (325)
                      ..+|+|||+|..|+-+|..+.+.|.+ |+++++++
T Consensus       570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~  604 (752)
T PRK12778        570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS  604 (752)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            46899999999999999999999997 99998875

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=97.45  E-value=0.0022  Score=60.64  Aligned_cols=101  Identities=14%  Similarity=0.170  Sum_probs=65.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      ..+|+|||+|..|+-+|..|.+.|. +|+++++.+...                          ++       ....   
T Consensus       273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~--------------------------~~-------~~~~---  316 (457)
T PRK11749        273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREE--------------------------MP-------ASEE---  316 (457)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCccc--------------------------CC-------CCHH---
Confidence            4689999999999999999999998 899998865310                          00       0011   


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeec--------------CCCCceeEEEEEeCeEEEcccCCCCC
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNL--------------LSPGREIEEYYSGRFLVVASGETTNP  151 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~--------------~~~~~~~~~~~~ad~vIiAtG~~~~p  151 (325)
                       ..+.+++.|+..  ++++.+.++..++ .+.-.|++...              ..+  +..+ +.+|.||+|+|  ..|
T Consensus       317 -~~~~~~~~GV~i--~~~~~v~~i~~~~-~~~~~v~~~~~~~~~~~~~g~~~~~~~g--~~~~-i~~D~vi~a~G--~~p  387 (457)
T PRK11749        317 -EVEHAKEEGVEF--EWLAAPVEILGDE-GRVTGVEFVRMELGEPDASGRRRVPIEG--SEFT-LPADLVIKAIG--QTP  387 (457)
T ss_pred             -HHHHHHHCCCEE--EecCCcEEEEecC-CceEEEEEEEEEecCcCCCCCcccCCCC--ceEE-EECCEEEECcc--CCC
Confidence             233455667654  8888888886543 11111332210              011  2257 89999999999  455


Q ss_pred             C
Q 020533          152 F  152 (325)
Q Consensus       152 ~  152 (325)
                      +
T Consensus       388 ~  388 (457)
T PRK11749        388 N  388 (457)
T ss_pred             C
Confidence            4

>PRK02106 choline dehydrogenase; Validated

Probab=97.43  E-value=0.00017  Score=69.87  Aligned_cols=35  Identities=29%  Similarity=0.457  Sum_probs=32.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHh-cCCCeEEEecCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSL-QSIPYVILEREN   40 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~-~g~~v~v~e~~~   40 (325)
                      ..+|++|||+|++|+.+|.+|++ .|++|+|+|+.+
T Consensus         4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~   39 (560)
T PRK02106          4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG   39 (560)
T ss_pred             CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence            35899999999999999999999 799999999985

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=97.43  E-value=0.00019  Score=66.59  Aligned_cols=34  Identities=18%  Similarity=0.394  Sum_probs=32.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ++||+|||+|++|+++|..|++.|.+|+++|+..
T Consensus         2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~   35 (422)
T PRK05329          2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ   35 (422)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence            4799999999999999999999999999999874

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.41  E-value=0.0093  Score=59.00  Aligned_cols=35  Identities=14%  Similarity=0.273  Sum_probs=30.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~~   41 (325)
                      .++|+|||+|..|+-+|..+.+.|. +|+++.+++.
T Consensus       468 gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~  503 (654)
T PRK12769        468 GLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDE  503 (654)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCC
Confidence            3589999999999999999999997 6999887753

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=97.39  E-value=0.00035  Score=63.06  Aligned_cols=102  Identities=22%  Similarity=0.272  Sum_probs=69.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhc--------------CCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQ--------------SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSS   73 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~--------------g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~   73 (325)
                      -.++||||||.|...|..|+..              .++|+++|..+.+-..                            
T Consensus       219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~m----------------------------  270 (491)
T KOG2495|consen  219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNM----------------------------  270 (491)
T ss_pred             EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHH----------------------------
Confidence            3689999999999999999752              3589999998853100                            


Q ss_pred             CCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533           74 YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (325)
Q Consensus        74 ~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~  153 (325)
                           -...+.+|.++...+.++..  ..++.|..+....      ++.+..++   +..+ +.+-.+|.|||...+|..
T Consensus       271 -----Fdkrl~~yae~~f~~~~I~~--~~~t~Vk~V~~~~------I~~~~~~g---~~~~-iPYG~lVWatG~~~rp~~  333 (491)
T KOG2495|consen  271 -----FDKRLVEYAENQFVRDGIDL--DTGTMVKKVTEKT------IHAKTKDG---EIEE-IPYGLLVWATGNGPRPVI  333 (491)
T ss_pred             -----HHHHHHHHHHHHhhhcccee--ecccEEEeecCcE------EEEEcCCC---ceee-ecceEEEecCCCCCchhh
Confidence                 11245556655555556554  8888888875432      44443322   3367 899999999997666654


Q ss_pred             C
Q 020533          154 P  154 (325)
Q Consensus       154 p  154 (325)
                      -
T Consensus       334 k  334 (491)
T KOG2495|consen  334 K  334 (491)
T ss_pred             h
Confidence            4

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.33  E-value=0.0002  Score=62.53  Aligned_cols=35  Identities=20%  Similarity=0.367  Sum_probs=31.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCY   42 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~   42 (325)
                      ..|-|||||.+|-.+|++++++|++|.++|-++.-
T Consensus         4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k   38 (439)
T COG1206           4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK   38 (439)
T ss_pred             CceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence            35999999999999999999999999999987643

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=97.32  E-value=0.0047  Score=55.76  Aligned_cols=34  Identities=35%  Similarity=0.537  Sum_probs=30.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhc----CCCeEEEecC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQ----SIPYVILERE   39 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~----g~~v~v~e~~   39 (325)
                      +.+||+|+||||.|+++|..|...    ..++.++|..
T Consensus        35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~   72 (481)
T KOG3855|consen   35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG   72 (481)
T ss_pred             ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence            479999999999999999999864    4589999987

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=97.29  E-value=0.00033  Score=61.16  Aligned_cols=34  Identities=24%  Similarity=0.453  Sum_probs=31.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ++||+|||+|.+||+|+.+|.++|.+++|+-+..
T Consensus         2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ   35 (421)
T COG3075           2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ   35 (421)
T ss_pred             cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence            5899999999999999999999999999998754

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=97.27  E-value=0.00074  Score=60.76  Aligned_cols=134  Identities=14%  Similarity=0.184  Sum_probs=76.2

Q ss_pred             CeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhH-----------HHHHHHHhhCC---HHHHHHHHHHHHH
Q 020533          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV-----------YLGVVLFKYVP---FGWVDTLMVMLSR  252 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~-----------~~~~~~~~~~p---~~~~~~~~~~~~~  252 (325)
                      ..|+|||+|++|+=+|..+++.|.+|.++.+.+. +--+...           +....+....|   ......+-+.-.+
T Consensus         4 ~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k-~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~   82 (408)
T COG2081           4 FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPK-LGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPE   82 (408)
T ss_pred             ceEEEECCCHHHHHHHHHHhhcCCEEEEEecCcc-ccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHH
Confidence            4799999999999999999999999999998762 2211110           11223333444   2222212111111


Q ss_pred             HHhcCccccCCC--CCCCCchhhhhccCceeeeChhhhhhhhCCceEEecC--CeeeecCc---eEEeeecceecCCC
Q 020533          253 LVYGDLSKYGIP--KPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQSEQQ--NSQIGAQT---RTELLLKTWLGTDT  323 (325)
Q Consensus       253 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~~~~~--i~~~~~~~---~v~~~dg~~~~~d~  323 (325)
                      .+..=.+++|+.  .-..|.+++..... .+ +=+-++..+++.+|+++..  |..+..++   .+...+|..+.+|.
T Consensus        83 d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA-~~-Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~  158 (408)
T COG2081          83 DFIDWVEGLGIALKEEDLGRMFPDSDKA-SP-IVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDS  158 (408)
T ss_pred             HHHHHHHhcCCeeEEccCceecCCccch-HH-HHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccE
Confidence            111001233332  12333433221111 12 2244677789999999998  88888873   56778887777764

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=97.26  E-value=0.00025  Score=64.43  Aligned_cols=40  Identities=25%  Similarity=0.458  Sum_probs=37.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCc
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI   45 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~   45 (325)
                      ..+|++|||+|..||++|..|++.|.+|+++|++...||.
T Consensus        13 ~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGa   52 (561)
T KOG4254|consen   13 PEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGA   52 (561)
T ss_pred             cccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCcc
Confidence            4689999999999999999999999999999999777773

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.22  E-value=0.017  Score=57.14  Aligned_cols=34  Identities=24%  Similarity=0.399  Sum_probs=30.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~   40 (325)
                      ..+|+|||+|..|+.+|..|.+.|. +|+++.+.+
T Consensus       323 gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~  357 (652)
T PRK12814        323 GKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT  357 (652)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            4689999999999999999999987 599998775

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=97.22  E-value=0.0004  Score=66.82  Aligned_cols=40  Identities=30%  Similarity=0.446  Sum_probs=35.6

Q ss_pred             CCCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         1 M~~~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      |.....++|++|||+|.+|..+|..|++.|.+|+|+|+..
T Consensus         1 ~~~~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~   40 (542)
T COG2303           1 MSEMKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG   40 (542)
T ss_pred             CCcccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence            3445567999999999999999999998899999999884

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.20  E-value=0.003  Score=65.29  Aligned_cols=96  Identities=15%  Similarity=0.117  Sum_probs=65.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      ..+|+|||+|+.|+.+|..|.+.|. .++|+|..+.+.                                         .
T Consensus       317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~~-----------------------------------------~  355 (985)
T TIGR01372       317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADVS-----------------------------------------P  355 (985)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcchh-----------------------------------------H
Confidence            4689999999999999999999996 578998765321                                         1


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~  153 (325)
                      .+.+.+++.++..  +.++.+..+.-++  ..-.|++....+   +..+ +.+|.|+++.|  ..|+.
T Consensus       356 ~l~~~L~~~GV~i--~~~~~v~~i~g~~--~v~~V~l~~~~g---~~~~-i~~D~V~va~G--~~Pnt  413 (985)
T TIGR01372       356 EARAEARELGIEV--LTGHVVAATEGGK--RVSGVAVARNGG---AGQR-LEADALAVSGG--WTPVV  413 (985)
T ss_pred             HHHHHHHHcCCEE--EcCCeEEEEecCC--cEEEEEEEecCC---ceEE-EECCEEEEcCC--cCchh
Confidence            2334456667554  8899888886432  222344442111   1267 89999999999  45543

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=97.19  E-value=0.00059  Score=59.78  Aligned_cols=39  Identities=36%  Similarity=0.477  Sum_probs=34.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC--CCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN--CYAS   44 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~--~~Gg   44 (325)
                      ..+||+|||||.+||.+|..|+..|.+|+|+|++.  .+||
T Consensus         4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGG   44 (552)
T COG3573           4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGG   44 (552)
T ss_pred             ccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccc
Confidence            35799999999999999999999999999999764  5666

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.17  E-value=0.0053  Score=58.23  Aligned_cols=107  Identities=11%  Similarity=0.093  Sum_probs=62.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      ..+|+|||+|..|+-+|..+.+.|. +|++++..+.....+                  +.    ...++.++.     .
T Consensus       281 gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~------------------~~----~~~~~~~~~-----~  333 (471)
T PRK12810        281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRR------------------NK----NNPWPYWPM-----K  333 (471)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCcccc------------------cc----ccCCcccch-----H
Confidence            4689999999999999999999886 688776554322100                  00    000011111     1


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEE-EEEee-----c----CCCCceeEEEEEeCeEEEcccC
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWN-VKASN-----L----LSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~-v~~~~-----~----~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                      ...+.+.+.|+..  ++++.++++..++  +..+ |++..     +    ..+  +..+ +.+|.||+|+|.
T Consensus       334 ~~~~~~~~~GV~i--~~~~~~~~i~~~~--g~v~~V~~~~~~~~~g~~~~~~g--~~~~-i~~D~VI~A~G~  398 (471)
T PRK12810        334 LEVSNAHEEGVER--EFNVQTKEFEGEN--GKVTGVKVVRTELGEGDFEPVEG--SEFV-LPADLVLLAMGF  398 (471)
T ss_pred             HHHHHHHHcCCeE--EeccCceEEEccC--CEEEEEEEEEEEecCCCccccCC--ceEE-EECCEEEECcCc
Confidence            1233455567555  8888888885322  3322 33221     1    011  2367 999999999993

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=97.12  E-value=0.028  Score=53.54  Aligned_cols=35  Identities=17%  Similarity=0.235  Sum_probs=30.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~~   41 (325)
                      .++|+|||+|..|+-+|..+.+.|. +|+++|..+.
T Consensus       283 gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~  318 (485)
T TIGR01317       283 GKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPK  318 (485)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence            4689999999999999988888875 7999988764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=97.07  E-value=0.00015  Score=59.34  Aligned_cols=43  Identities=26%  Similarity=0.473  Sum_probs=36.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCCC-CccCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYA-SIWKKY   49 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~~~G-g~w~~~   49 (325)
                      ..||+|||||.+||++|+...++  ..+|.|+|.+-.+| |.|...
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWLGG  121 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWLGG  121 (328)
T ss_pred             ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccccc
Confidence            36999999999999999999866  56999999987765 588754

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=97.06  E-value=0.00077  Score=62.09  Aligned_cols=33  Identities=27%  Similarity=0.456  Sum_probs=31.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      +||+|||+|++|+++|..|.+.|.+++|+|+..
T Consensus         1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~   33 (419)
T TIGR03378         1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ   33 (419)
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            589999999999999999999999999999875

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.95  E-value=0.052  Score=53.61  Aligned_cols=35  Identities=14%  Similarity=0.192  Sum_probs=30.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~~   41 (325)
                      .++|+|||+|..|+-+|..+.+.|. +|+++.+++.
T Consensus       451 gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~  486 (639)
T PRK12809        451 GKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDE  486 (639)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence            4689999999999999999999985 7999987753

>TIGR01810 betA choline dehydrogenase

Probab=96.94  E-value=0.00077  Score=64.95  Aligned_cols=32  Identities=28%  Similarity=0.447  Sum_probs=30.2

Q ss_pred             eEEEECCChHHHHHHHHHHhcC-CCeEEEecCC
Q 020533            9 EVIMVGAGTSGLATAACLSLQS-IPYVILEREN   40 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g-~~v~v~e~~~   40 (325)
                      |++|||+|.+|+.+|.+|++.+ ++|+|+|+.+
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~   33 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG   33 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence            7999999999999999999998 6999999975

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=96.90  E-value=0.011  Score=60.63  Aligned_cols=34  Identities=24%  Similarity=0.353  Sum_probs=31.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ..+|+|||||..|+-+|..+.+.|.+|+++.+++
T Consensus       447 Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~  480 (944)
T PRK12779        447 GKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT  480 (944)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence            4689999999999999999999999999998764

>PLN02785 Protein HOTHEAD

Probab=96.78  E-value=0.0018  Score=62.84  Aligned_cols=34  Identities=38%  Similarity=0.580  Sum_probs=31.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ..||++|||+|.+|+.+|.+|.+ +.+|+|+|+..
T Consensus        54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~   87 (587)
T PLN02785         54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG   87 (587)
T ss_pred             ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence            36999999999999999999999 68999999986

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=96.76  E-value=0.0032  Score=59.37  Aligned_cols=34  Identities=18%  Similarity=0.176  Sum_probs=31.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      .++|+|||+|.+|+-+|..|.+.+.+|+++.+..
T Consensus       204 gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~  237 (461)
T PLN02172        204 NEVVVVIGNFASGADISRDIAKVAKEVHIASRAS  237 (461)
T ss_pred             CCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence            4689999999999999999999999999998865

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.67  E-value=0.031  Score=50.68  Aligned_cols=48  Identities=13%  Similarity=0.126  Sum_probs=36.3

Q ss_pred             CceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCC
Q 020533           97 GPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET  148 (325)
Q Consensus        97 ~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~  148 (325)
                      ..+++-+++|.+++...+ +.+.+.+.....+  +..+ +..|.||+|||..
T Consensus       292 ~v~l~~~~ev~~~~~~G~-g~~~l~~~~~~~~--~~~t-~~~D~vIlATGY~  339 (436)
T COG3486         292 DVRLLSLSEVQSVEPAGD-GRYRLTLRHHETG--ELET-VETDAVILATGYR  339 (436)
T ss_pred             CeeeccccceeeeecCCC-ceEEEEEeeccCC--CceE-EEeeEEEEecccc
Confidence            345677889999987753 5588888776554  4577 8999999999964

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=96.66  E-value=0.0061  Score=55.12  Aligned_cols=101  Identities=18%  Similarity=0.180  Sum_probs=68.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhc----CCCe-EEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQ----SIPY-VILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSR   80 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~----g~~v-~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (325)
                      .+..|-|||.|+-|-.+|+.|.++    |.+| .+|+..-..+-                                 .-.
T Consensus       346 ek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~k---------------------------------iLP  392 (659)
T KOG1346|consen  346 EKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEK---------------------------------ILP  392 (659)
T ss_pred             hcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhh---------------------------------hhH
Confidence            346799999999999999999874    4554 56654432210                                 011


Q ss_pred             HHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533           81 AQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (325)
Q Consensus        81 ~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~  153 (325)
                      +.+.++-...+++-|+.+  +-|..|.++....  ....+++.++       .+ +..|.||+|+|  -.|+.
T Consensus       393 eyls~wt~ekir~~GV~V--~pna~v~sv~~~~--~nl~lkL~dG-------~~-l~tD~vVvavG--~ePN~  451 (659)
T KOG1346|consen  393 EYLSQWTIEKIRKGGVDV--RPNAKVESVRKCC--KNLVLKLSDG-------SE-LRTDLVVVAVG--EEPNS  451 (659)
T ss_pred             HHHHHHHHHHHHhcCcee--ccchhhhhhhhhc--cceEEEecCC-------Ce-eeeeeEEEEec--CCCch
Confidence            123333344456667665  8999999988765  5566777765       67 88999999999  55654

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=96.64  E-value=0.042  Score=56.21  Aligned_cols=34  Identities=21%  Similarity=0.346  Sum_probs=29.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhc-C-CCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQ-S-IPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~-g-~~v~v~e~~~   40 (325)
                      ..+|+|||||..|+-+|..+.+. | .+|+++.+++
T Consensus       668 GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~  703 (1019)
T PRK09853        668 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT  703 (1019)
T ss_pred             CCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence            46899999999999999998887 5 3899998875

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=96.61  E-value=0.0025  Score=59.21  Aligned_cols=44  Identities=25%  Similarity=0.453  Sum_probs=34.9

Q ss_pred             CCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC
Q 020533            5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK   48 (325)
Q Consensus         5 ~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~   48 (325)
                      +..+||+|+|.|..-..+|..|++.|.+|.-+|+++.-||.|..
T Consensus         2 ~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~as   45 (438)
T PF00996_consen    2 DEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWAS   45 (438)
T ss_dssp             -SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-E
T ss_pred             CccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhc
Confidence            35699999999999999999999999999999999999998875

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=96.60  E-value=0.12  Score=53.61  Aligned_cols=35  Identities=20%  Similarity=0.350  Sum_probs=29.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCC-eEEEecCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIP-YVILEREN   40 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~-v~v~e~~~   40 (325)
                      ...+|+|||+|..|+-+|..+.+.|.+ |+++.++.
T Consensus       570 ~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~  605 (1006)
T PRK12775        570 LGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRS  605 (1006)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecC
Confidence            357899999999999999999999985 77776653

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=96.50  E-value=0.037  Score=49.16  Aligned_cols=94  Identities=20%  Similarity=0.226  Sum_probs=66.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      .++|+|||+|-+++-.|..|.+.+.+|+++=|++.+-                                   ..    +.
T Consensus       143 ~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~r-----------------------------------a~----~~  183 (305)
T COG0492         143 GKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFR-----------------------------------AE----EI  183 (305)
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccC-----------------------------------cC----HH
Confidence            3589999999999999999999999999998887531                                   11    23


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                      +.+.+.+.. ...+.+++.+.++.-++   .-.|..++..+   +... +.+|.++++.|.
T Consensus       184 ~~~~l~~~~-~i~~~~~~~i~ei~G~~---v~~v~l~~~~~---~~~~-~~~~gvf~~iG~  236 (305)
T COG0492         184 LVERLKKNV-KIEVLTNTVVKEILGDD---VEGVVLKNVKG---EEKE-LPVDGVFIAIGH  236 (305)
T ss_pred             HHHHHHhcC-CeEEEeCCceeEEecCc---cceEEEEecCC---ceEE-EEeceEEEecCC
Confidence            333344331 34458999998886543   22355555321   3367 899999999994

>PRK13984 putative oxidoreductase; Provisional

Probab=96.39  E-value=0.1  Score=51.25  Aligned_cols=31  Identities=10%  Similarity=0.219  Sum_probs=25.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC------CeEEEe
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI------PYVILE   37 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~------~v~v~e   37 (325)
                      ..+|+|||||..|+-+|..|.+.+.      +|+++.
T Consensus       418 ~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~  454 (604)
T PRK13984        418 PRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS  454 (604)
T ss_pred             CCcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence            4689999999999999999988753      566653

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.31  E-value=0.0068  Score=54.18  Aligned_cols=41  Identities=15%  Similarity=0.076  Sum_probs=34.7

Q ss_pred             CCCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         1 M~~~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      |..+..-.+|+|||+|..|...|..++..|++|+++|+.+.
T Consensus         1 ~~~~~~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~   41 (321)
T PRK07066          1 MAVITDIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG   41 (321)
T ss_pred             CCCCCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            44443346799999999999999999999999999998863

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=96.29  E-value=0.038  Score=51.48  Aligned_cols=95  Identities=16%  Similarity=0.079  Sum_probs=65.7

Q ss_pred             EEECCChHHHHHH-HHHH----hcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533           11 IMVGAGTSGLATA-ACLS----LQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus        11 ~IIGaG~~Gl~~a-~~L~----~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      +|++.|..|+..+ ..+.    +.|.+|++++..+..                                   .+..++.+
T Consensus       219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~pps-----------------------------------lpG~rL~~  263 (422)
T PRK05329        219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPS-----------------------------------VPGLRLQN  263 (422)
T ss_pred             EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCC-----------------------------------CchHHHHH
Confidence            6788888898887 4443    359999999877631                                   12236778


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~  149 (325)
                      .+.+.+++.+..  ++.+++|.+++.++  +...+..... +   +... +.+|.||+|+|.+.
T Consensus       264 aL~~~l~~~Gv~--I~~g~~V~~v~~~~--~~V~~v~~~~-g---~~~~-i~AD~VVLAtGrf~  318 (422)
T PRK05329        264 ALRRAFERLGGR--IMPGDEVLGAEFEG--GRVTAVWTRN-H---GDIP-LRARHFVLATGSFF  318 (422)
T ss_pred             HHHHHHHhCCCE--EEeCCEEEEEEEeC--CEEEEEEeeC-C---ceEE-EECCEEEEeCCCcc
Confidence            888888887855  49999999998764  3333322221 1   2257 89999999999653

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=96.28  E-value=0.0036  Score=58.02  Aligned_cols=43  Identities=21%  Similarity=0.355  Sum_probs=34.3

Q ss_pred             hHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCC--ceEeecC
Q 020533           17 TSGLATAACLSLQSIPYVILERENCYASIWKKYSYD--RLRLHLA   59 (325)
Q Consensus        17 ~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~--~~~~~~~   59 (325)
                      +|||+||..|+++|++|+|||+++++||.......+  +...+..
T Consensus         1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~~~~~g~~~e~G   45 (450)
T PF01593_consen    1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRTFRFDNPGFTFELG   45 (450)
T ss_dssp             HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-EEEETTTTEEEESS
T ss_pred             ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEEecCCccceeecCC
Confidence            589999999999999999999999999965554444  5555544

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=96.26  E-value=0.0049  Score=50.38  Aligned_cols=33  Identities=27%  Similarity=0.386  Sum_probs=29.0

Q ss_pred             eEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            9 EVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      +|+|||+|..|...|..++..|++|+++|.++.
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   33 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE   33 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            589999999999999999999999999999863

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=96.26  E-value=0.0053  Score=49.00  Aligned_cols=32  Identities=28%  Similarity=0.404  Sum_probs=30.2

Q ss_pred             eEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      +|+|||||..|.++|..|+++|.+|.++.+++
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            58999999999999999999999999998875

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=96.21  E-value=0.018  Score=50.75  Aligned_cols=101  Identities=17%  Similarity=0.071  Sum_probs=73.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHHH
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHL   87 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl   87 (325)
                      -+-+|||||..+|.+|-.|.-.|+++++.=|+--+-|-                                  ..++.+.+
T Consensus       199 GkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~LrGF----------------------------------Dqdmae~v  244 (503)
T KOG4716|consen  199 GKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILLRGF----------------------------------DQDMAELV  244 (503)
T ss_pred             CceEEEccceeeeehhhhHhhcCCCcEEEEEEeecccc----------------------------------cHHHHHHH
Confidence            46799999999999999999999999998777432110                                  13678888


Q ss_pred             HHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCC
Q 020533           88 DHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET  148 (325)
Q Consensus        88 ~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~  148 (325)
                      ....+..|+..  ...+..+.++..+ .+...|...+..++  +..+ -.+|.|++|.|.-
T Consensus       245 ~~~m~~~Gikf--~~~~vp~~Veq~~-~g~l~v~~k~t~t~--~~~~-~~ydTVl~AiGR~  299 (503)
T KOG4716|consen  245 AEHMEERGIKF--LRKTVPERVEQID-DGKLRVFYKNTNTG--EEGE-EEYDTVLWAIGRK  299 (503)
T ss_pred             HHHHHHhCCce--eecccceeeeecc-CCcEEEEeeccccc--cccc-chhhhhhhhhccc
Confidence            88889999764  4444566666654 46677777665543  2234 5789999999943

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=96.20  E-value=0.11  Score=53.33  Aligned_cols=34  Identities=21%  Similarity=0.403  Sum_probs=30.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhc-CC-CeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQ-SI-PYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~-g~-~v~v~e~~~   40 (325)
                      ..+|+|||||..|+-+|..+.+. |. +|+++.++.
T Consensus       666 GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~  701 (1012)
T TIGR03315       666 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT  701 (1012)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence            56899999999999999998886 76 799998875

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=96.17  E-value=0.17  Score=49.32  Aligned_cols=34  Identities=21%  Similarity=0.361  Sum_probs=29.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcC-CCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQS-IPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g-~~v~v~e~~~   40 (325)
                      ..+|+|||+|..|+-++..+.+.+ .+++|+.+.+
T Consensus       267 gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~  301 (564)
T PRK12771        267 GKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRT  301 (564)
T ss_pred             CCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecC
Confidence            468999999999999999888888 5788888775

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.09  E-value=0.0086  Score=50.82  Aligned_cols=34  Identities=29%  Similarity=0.516  Sum_probs=31.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      ++++|||+|..|...|..|.+.|.+|+++|+++.
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~   34 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE   34 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence            3799999999999999999999999999999874

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.05  E-value=0.0055  Score=45.12  Aligned_cols=37  Identities=32%  Similarity=0.358  Sum_probs=32.0

Q ss_pred             CCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       183 ~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      ++++++|+|||+|..|..-+..|.+.|++|+++.+..
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence            4678999999999999999999999999999988874

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=96.00  E-value=0.024  Score=54.48  Aligned_cols=35  Identities=31%  Similarity=0.395  Sum_probs=30.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      +.++|+|||+|.||.-.|..|++...+|.+.-|+.
T Consensus       182 ~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~  216 (531)
T PF00743_consen  182 KGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRG  216 (531)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC--
T ss_pred             CCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecc
Confidence            45799999999999999999999988998887764

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=95.97  E-value=0.0089  Score=57.14  Aligned_cols=38  Identities=32%  Similarity=0.369  Sum_probs=33.8

Q ss_pred             CCCCeEEEECCChHHHHHHHHHHhc-CCCeEEEecCCCC
Q 020533            5 AAGVEVIMVGAGTSGLATAACLSLQ-SIPYVILERENCY   42 (325)
Q Consensus         5 ~~~~~v~IIGaG~~Gl~~a~~L~~~-g~~v~v~e~~~~~   42 (325)
                      ...||.+|||||-+|..+|.+|++. ..+|.++|+....
T Consensus        55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP   93 (623)
T ss_pred             ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence            3579999999999999999999997 6799999997754

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=95.95  E-value=0.0082  Score=49.29  Aligned_cols=34  Identities=21%  Similarity=0.352  Sum_probs=27.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      ++|+|||.|..||.+|..|++.|++|+.+|.++.
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~   34 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE   34 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence            3799999999999999999999999999998874

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=95.94  E-value=0.041  Score=50.29  Aligned_cols=60  Identities=7%  Similarity=-0.006  Sum_probs=47.2

Q ss_pred             CHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCC
Q 020533           79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNP  151 (325)
Q Consensus        79 ~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p  151 (325)
                      ...++.+.|...+++.++..  +++++|.+++  +  +.|.+.+....      .. ++||.||+|||..+.|
T Consensus        84 ~A~sVv~~L~~~l~~~gV~i--~~~~~V~~i~--~--~~~~v~~~~~~------~~-~~a~~vIlAtGG~s~p  143 (376)
T TIGR03862        84 KAAPLLRAWLKRLAEQGVQF--HTRHRWIGWQ--G--GTLRFETPDGQ------ST-IEADAVVLALGGASWS  143 (376)
T ss_pred             CHHHHHHHHHHHHHHCCCEE--EeCCEEEEEe--C--CcEEEEECCCc------eE-EecCEEEEcCCCcccc
Confidence            67899999999999988665  9999999982  2  35888775321      46 8999999999975544

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.93  E-value=0.0086  Score=53.99  Aligned_cols=49  Identities=20%  Similarity=0.386  Sum_probs=44.9

Q ss_pred             CCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCC
Q 020533            4 QAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYD   52 (325)
Q Consensus         4 ~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~   52 (325)
                      .+..+||+|||.|..--..|..+++.|.+|.=+|+++..||.|....++
T Consensus         5 lP~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms   53 (547)
T KOG4405|consen    5 LPEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMS   53 (547)
T ss_pred             CchhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeec
Confidence            3567999999999999999999999999999999999999999987665

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.89  E-value=0.012  Score=51.93  Aligned_cols=34  Identities=24%  Similarity=0.312  Sum_probs=31.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      .+|+|||+|..|...|..|+..|++|+++|+++.
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   39 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE   39 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            4799999999999999999999999999999874

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.77  E-value=0.036  Score=49.18  Aligned_cols=103  Identities=17%  Similarity=0.075  Sum_probs=72.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      .+++++|+|||..++..|--++..|-++.+|=|.+.+-                   -.|              .+.+.+
T Consensus       188 ~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvL-------------------R~F--------------D~~i~~  234 (478)
T KOG0405|consen  188 QPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVL-------------------RGF--------------DEMISD  234 (478)
T ss_pred             cCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhh-------------------cch--------------hHHHHH
Confidence            35789999999999999999999999999988776421                   001              124566


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p  154 (325)
                      .+.+..+.-+++.  +-++.++.+.... ++...+....+       .. ..+|.|+.|+|  ..|+..
T Consensus       235 ~v~~~~~~~ginv--h~~s~~~~v~K~~-~g~~~~i~~~~-------~i-~~vd~llwAiG--R~Pntk  290 (478)
T KOG0405|consen  235 LVTEHLEGRGINV--HKNSSVTKVIKTD-DGLELVITSHG-------TI-EDVDTLLWAIG--RKPNTK  290 (478)
T ss_pred             HHHHHhhhcceee--cccccceeeeecC-CCceEEEEecc-------cc-ccccEEEEEec--CCCCcc
Confidence            6666677777655  8888888887664 34444544443       22 45899999999  555543

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.76  E-value=0.011  Score=55.81  Aligned_cols=34  Identities=29%  Similarity=0.404  Sum_probs=31.3

Q ss_pred             eEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC
Q 020533            9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCY   42 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~   42 (325)
                      +|+|||+|++|+++|+.|.++|++|+++|+++..
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~   35 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP   35 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence            5899999999999999999999999999987643

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=95.74  E-value=0.024  Score=52.15  Aligned_cols=34  Identities=29%  Similarity=0.518  Sum_probs=30.2

Q ss_pred             eEEEECcCCCHHHHHHHH--hhccCeEEEEEecCCe
Q 020533          188 NVLVVGSGNSGMEIALDL--ANHAAKTSLVVRSPVH  221 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l--~~~~~~v~~~~r~~~~  221 (325)
                      .|+|||+|.+|.-+|..|  +..+.+|.++.+.+..
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~   36 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP   36 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence            489999999999999999  7778899999988744

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=95.74  E-value=0.011  Score=39.84  Aligned_cols=29  Identities=24%  Similarity=0.460  Sum_probs=27.0

Q ss_pred             EECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          191 VVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       191 VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      |||+|.+|+-+|..|++.+.+|+++++++
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~   29 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKND   29 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCc
Confidence            89999999999999999999999999987

...

>PLN02463 lycopene beta cyclase

Probab=95.65  E-value=0.014  Score=54.81  Aligned_cols=38  Identities=21%  Similarity=0.469  Sum_probs=32.9

Q ss_pred             CeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeec
Q 020533          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLS  224 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p  224 (325)
                      -+|+|||+|.+|.-+|..|++.|.+|.++.+++....|
T Consensus        29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p   66 (447)
T PLN02463         29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWP   66 (447)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhc
Confidence            47999999999999999999999999999998743333

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.60  E-value=0.016  Score=51.81  Aligned_cols=34  Identities=21%  Similarity=0.240  Sum_probs=31.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      .+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~   36 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA   36 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence            3799999999999999999999999999999863

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=95.55  E-value=0.05  Score=55.28  Aligned_cols=38  Identities=29%  Similarity=0.395  Sum_probs=35.2

Q ss_pred             CCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          182 KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       182 ~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      ....|++|+|||+|.+|.-+|..|.+.|..|++..|+.
T Consensus      1781 ~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~d 1818 (2142)
T KOG0399|consen 1781 AFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSD 1818 (2142)
T ss_pred             ccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecC
Confidence            44568999999999999999999999999999999997

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=95.50  E-value=0.029  Score=54.55  Aligned_cols=97  Identities=14%  Similarity=0.169  Sum_probs=65.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      +..-+|||+|.-||.+|..|...|.++++++-.+.+-                           ..  +...   .-.+.
T Consensus       145 ~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lM---------------------------er--QLD~---~ag~l  192 (793)
T COG1251         145 KKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLM---------------------------ER--QLDR---TAGRL  192 (793)
T ss_pred             cCCcEEEccchhhhHHHHHHHhCCCceEEEeecchHH---------------------------HH--hhhh---HHHHH
Confidence            3457999999999999999999999999997665310                           00  0001   12245


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                      |+...++.|+..  +++.....+....  ..-.+.+.++       .. +.||.||+|+|.
T Consensus       193 L~~~le~~Gi~~--~l~~~t~ei~g~~--~~~~vr~~DG-------~~-i~ad~VV~a~GI  241 (793)
T COG1251         193 LRRKLEDLGIKV--LLEKNTEEIVGED--KVEGVRFADG-------TE-IPADLVVMAVGI  241 (793)
T ss_pred             HHHHHHhhccee--ecccchhhhhcCc--ceeeEeecCC-------Cc-ccceeEEEeccc
Confidence            666677788766  5565555554321  2234666665       55 899999999994

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=95.43  E-value=0.029  Score=46.88  Aligned_cols=34  Identities=26%  Similarity=0.361  Sum_probs=31.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ..+|+|||||.+|..-+..|.+.|.+|+|+++..
T Consensus         9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~   42 (205)
T TIGR01470         9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL   42 (205)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            4689999999999999999999999999998764

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=95.42  E-value=0.018  Score=42.36  Aligned_cols=35  Identities=23%  Similarity=0.295  Sum_probs=31.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      +.++|+|||+|..|..-+..|.+.|.+++|+.+..
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence            35789999999999999999999999999998883

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=95.41  E-value=0.026  Score=52.22  Aligned_cols=34  Identities=44%  Similarity=0.696  Sum_probs=32.8

Q ss_pred             CCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       186 ~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .++++|||+|.+|++.|.+|+..|-+|+++.+.|
T Consensus       124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKep  157 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEP  157 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence            5789999999999999999999999999999998

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.40  E-value=0.021  Score=50.40  Aligned_cols=34  Identities=18%  Similarity=0.355  Sum_probs=31.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      .+|+|||+|..|..+|..|++.|++|+++|+++.
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~   35 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE   35 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence            3699999999999999999999999999998863

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=95.38  E-value=0.016  Score=53.57  Aligned_cols=35  Identities=37%  Similarity=0.486  Sum_probs=32.3

Q ss_pred             CeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCe
Q 020533          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVH  221 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~  221 (325)
                      ++|+|||+|..|+++|..|++.|.+|+++.+++..
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~   37 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK   37 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence            57999999999999999999999999999988743

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=95.33  E-value=0.025  Score=53.99  Aligned_cols=41  Identities=17%  Similarity=0.229  Sum_probs=35.2

Q ss_pred             CCCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         1 M~~~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      |..+..-.+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus         1 ~~~~~~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e   41 (507)
T PRK08268          1 MMALPSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG   41 (507)
T ss_pred             CCccCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            44444446799999999999999999999999999998874

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=95.30  E-value=0.044  Score=42.48  Aligned_cols=35  Identities=31%  Similarity=0.462  Sum_probs=31.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCC-eEEEecCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIP-YVILEREN   40 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~-v~v~e~~~   40 (325)
                      ...+++|||+|-+|-.++..|...|.+ ++|+.|+.
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~   46 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP   46 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence            457899999999999999999999996 99998875

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=95.26  E-value=0.032  Score=45.06  Aligned_cols=34  Identities=21%  Similarity=0.269  Sum_probs=30.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      +.+|+|+|+|.+|..|+..|...|.+++++|...
T Consensus        20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~   53 (168)
T PF01262_consen   20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP   53 (168)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred             CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence            4689999999999999999999999999999865

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=95.20  E-value=0.032  Score=43.98  Aligned_cols=31  Identities=26%  Similarity=0.414  Sum_probs=29.3

Q ss_pred             EEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533           10 VIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus        10 v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      |+|+|+|..|...|..|.+.|.+|+++.|..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            7899999999999999999999999998875

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.19  E-value=0.026  Score=49.94  Aligned_cols=33  Identities=21%  Similarity=0.263  Sum_probs=31.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      .+|+|||+|..|..+|..|++.|++|+++|+++
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA   37 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            479999999999999999999999999999875

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.18  E-value=0.027  Score=49.69  Aligned_cols=33  Identities=21%  Similarity=0.283  Sum_probs=31.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      .+|+|||+|..|...|..|++.|++|+++|+++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD   36 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            479999999999999999999999999999876

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=95.18  E-value=0.019  Score=53.32  Aligned_cols=33  Identities=33%  Similarity=0.392  Sum_probs=31.3

Q ss_pred             eEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                      +|+|||+|.+|+++|..|++.|.+|+++.+++.
T Consensus         2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~   34 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE   34 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence            699999999999999999999999999998874

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=95.14  E-value=0.039  Score=43.99  Aligned_cols=34  Identities=18%  Similarity=0.239  Sum_probs=30.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERE   39 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~   39 (325)
                      ...+|+|||||..|..-+..|.+.|.+|+|+++.
T Consensus        12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~   45 (157)
T PRK06719         12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE   45 (157)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence            3578999999999999999999999999999543

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=95.12  E-value=0.026  Score=47.11  Aligned_cols=37  Identities=27%  Similarity=0.390  Sum_probs=33.5

Q ss_pred             CCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       183 ~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      ++.+++|+|||+|.+|..-+..|.+.|++|+++....
T Consensus         6 ~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~   42 (205)
T TIGR01470         6 NLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL   42 (205)
T ss_pred             EcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            4678999999999999999999999999999987664

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.12  E-value=0.035  Score=52.33  Aligned_cols=34  Identities=35%  Similarity=0.551  Sum_probs=31.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      .++|+|+|+|..|+++|..|++.|++|+++|++.
T Consensus         5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4689999999999999999999999999999875

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.09  E-value=0.028  Score=49.70  Aligned_cols=34  Identities=18%  Similarity=0.231  Sum_probs=31.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      .+|+|||+|..|...|..|++.|++|+++|+++.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE   37 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            4699999999999999999999999999998863

>PTZ00188 adrenodoxin reductase; Provisional

Probab=95.07  E-value=0.037  Score=52.10  Aligned_cols=36  Identities=19%  Similarity=0.266  Sum_probs=31.5

Q ss_pred             CCCeEEEECcCCCHHHHHHHHh-hccCeEEEEEecCC
Q 020533          185 GGKNVLVVGSGNSGMEIALDLA-NHAAKTSLVVRSPV  220 (325)
Q Consensus       185 ~~~~v~VvG~G~s~~e~a~~l~-~~~~~v~~~~r~~~  220 (325)
                      .+++|+|||+|.+|+.+|..++ +.|.+|+++.|.|.
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~   74 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPN   74 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence            5789999999999999999765 56889999999873

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=95.05  E-value=0.027  Score=44.86  Aligned_cols=35  Identities=23%  Similarity=0.283  Sum_probs=32.0

Q ss_pred             CCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEE
Q 020533          182 KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVV  216 (325)
Q Consensus       182 ~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~  216 (325)
                      .++.+++|+|||+|..|...+..|.+.|.+|+++.
T Consensus         9 l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs   43 (157)
T PRK06719          9 FNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS   43 (157)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence            45679999999999999999999999999999884

>PRK04148 hypothetical protein; Provisional

Probab=95.04  E-value=0.025  Score=43.46  Aligned_cols=83  Identities=12%  Similarity=0.108  Sum_probs=51.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCC------CCCCH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYP------MFVSR   80 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~   80 (325)
                      ..++++||.| .|...|..|.+.|++|+.+|.++..=.....+.-+....+.-        .|....+.      ..-+.
T Consensus        17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf--------~p~~~~y~~a~liysirpp   87 (134)
T PRK04148         17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLF--------NPNLEIYKNAKLIYSIRPP   87 (134)
T ss_pred             CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCC--------CCCHHHHhcCCEEEEeCCC
Confidence            3679999999 999999999999999999998874110000000011111110        01111111      22356


Q ss_pred             HHHHHHHHHHHHHcCCCc
Q 020533           81 AQFIEHLDHYVSHFNIGP   98 (325)
Q Consensus        81 ~~~~~yl~~~a~~~~l~~   98 (325)
                      .|+..++.+.+++.+...
T Consensus        88 ~el~~~~~~la~~~~~~~  105 (134)
T PRK04148         88 RDLQPFILELAKKINVPL  105 (134)
T ss_pred             HHHHHHHHHHHHHcCCCE
Confidence            789999999999987653

>PLN02852 ferredoxin-NADP+ reductase

Probab=94.98  E-value=0.026  Score=53.51  Aligned_cols=36  Identities=33%  Similarity=0.456  Sum_probs=32.5

Q ss_pred             CCCeEEEECcCCCHHHHHHHHhh--ccCeEEEEEecCC
Q 020533          185 GGKNVLVVGSGNSGMEIALDLAN--HAAKTSLVVRSPV  220 (325)
Q Consensus       185 ~~~~v~VvG~G~s~~e~a~~l~~--~~~~v~~~~r~~~  220 (325)
                      .+++|+|||+|.+|+.+|..|++  .|.+|+++.|.+.
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~   62 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPT   62 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCC
Confidence            46899999999999999999986  6889999999873

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=94.96  E-value=0.047  Score=48.85  Aligned_cols=34  Identities=21%  Similarity=0.236  Sum_probs=31.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ..+|+|||+|..|...|..|++.|.+|+++.|++
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            3589999999999999999999999999999865

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=94.91  E-value=0.034  Score=46.22  Aligned_cols=38  Identities=32%  Similarity=0.457  Sum_probs=34.1

Q ss_pred             CCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          182 KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       182 ~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .++....|+|||+|+||.-+|..|++.|.+|.++.|+-
T Consensus        26 ~~~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~l   63 (262)
T COG1635          26 LDYLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKL   63 (262)
T ss_pred             HhhhhccEEEECcCcchHHHHHHHHhCCceEEEEEeec
Confidence            44556789999999999999999999999999999974

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=94.84  E-value=0.052  Score=45.24  Aligned_cols=34  Identities=24%  Similarity=0.295  Sum_probs=30.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERE   39 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~   39 (325)
                      ..++|+|||||-.|...+..|.+.|.+|+|+++.
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~   42 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE   42 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            3568999999999999999999999999999764

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=94.81  E-value=0.073  Score=49.00  Aligned_cols=61  Identities=18%  Similarity=0.285  Sum_probs=45.5

Q ss_pred             CCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCC
Q 020533           78 VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNP  151 (325)
Q Consensus        78 ~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p  151 (325)
                      .....+...+.+.+.+ |..  ++++++|.+++.++  +.|.|++.++       .. +++|.||+|+|.++..
T Consensus       132 idp~~~~~~l~~~~~~-G~~--i~~~~~V~~i~~~~--~~~~v~t~~g-------~~-~~a~~vV~a~G~~~~~  192 (381)
T TIGR03197       132 LSPPQLCRALLAHAGI-RLT--LHFNTEITSLERDG--EGWQLLDANG-------EV-IAASVVVLANGAQAGQ  192 (381)
T ss_pred             cChHHHHHHHHhccCC-CcE--EEeCCEEEEEEEcC--CeEEEEeCCC-------CE-EEcCEEEEcCCccccc
Confidence            3556677777777776 744  48999999998754  5688877654       45 8999999999987644

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=94.80  E-value=0.034  Score=46.37  Aligned_cols=36  Identities=22%  Similarity=0.329  Sum_probs=32.7

Q ss_pred             CCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEec
Q 020533          183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRS  218 (325)
Q Consensus       183 ~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~  218 (325)
                      ++.+++|+|||+|..|...+..|.+.|.+|+++.+.
T Consensus         7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~   42 (202)
T PRK06718          7 DLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE   42 (202)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            467899999999999999999999999999999764

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=94.79  E-value=0.05  Score=42.13  Aligned_cols=34  Identities=21%  Similarity=0.406  Sum_probs=30.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~   40 (325)
                      +.+|+|||+|..|..+|..|++.|+ +++|+|...
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~   36 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI   36 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence            4689999999999999999999999 799999765

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=94.75  E-value=0.039  Score=49.94  Aligned_cols=32  Identities=28%  Similarity=0.545  Sum_probs=30.6

Q ss_pred             eEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      +|.|||.|..||..|..|++.|++|+++|..+
T Consensus         2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~   33 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE   33 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence            69999999999999999999999999999876

>TIGR00518 alaDH alanine dehydrogenase

Probab=94.75  E-value=0.045  Score=50.18  Aligned_cols=34  Identities=21%  Similarity=0.240  Sum_probs=31.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ..+|+|||+|..|+.++..|...|.+|+++|++.
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~  200 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI  200 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            4679999999999999999999999999999875

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=94.72  E-value=0.042  Score=51.22  Aligned_cols=34  Identities=21%  Similarity=0.308  Sum_probs=31.7

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      .+|+|||.|..|+.+|..|++.|++|+++|+++.
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~   37 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH   37 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence            5799999999999999999999999999998764

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=94.68  E-value=0.4  Score=42.84  Aligned_cols=107  Identities=19%  Similarity=0.144  Sum_probs=65.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      +.+||+|||+|-+|+.+|..|+--=-.|+++|=.+.+                                       +-.+
T Consensus       353 ~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eL---------------------------------------kAD~  393 (520)
T COG3634         353 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEL---------------------------------------KADA  393 (520)
T ss_pred             CCceEEEECCCcchHHHHHhHHhhhheeeeeecchhh---------------------------------------hhHH
Confidence            3579999999999999999998766689999865532                                       1224


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCC
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRG  158 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g  158 (325)
                      .|++.+.... +..|..|..-+.+.-+. +.---+.+.+..++  +... +.-+-|++-.|  -.|+..-+.|
T Consensus       394 VLq~kl~sl~-Nv~ii~na~Ttei~Gdg-~kV~Gl~Y~dr~sg--e~~~-l~LeGvFVqIG--L~PNT~WLkg  459 (520)
T COG3634         394 VLQDKLRSLP-NVTIITNAQTTEVKGDG-DKVTGLEYRDRVSG--EEHH-LELEGVFVQIG--LLPNTEWLKG  459 (520)
T ss_pred             HHHHHHhcCC-CcEEEecceeeEEecCC-ceecceEEEeccCC--ceeE-EEeeeeEEEEe--cccChhHhhc
Confidence            4555555443 23446665555554332 12222455554443  3355 66778888888  3454433433

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.68  E-value=0.045  Score=48.20  Aligned_cols=34  Identities=21%  Similarity=0.348  Sum_probs=31.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      .+|+|||+|..|...|..|++.|++|+++|+++.
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~   37 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA   37 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence            3699999999999999999999999999998763

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=94.66  E-value=0.051  Score=43.60  Aligned_cols=33  Identities=21%  Similarity=0.347  Sum_probs=29.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      .+|.+||.|..|..+|.+|.++|+++.++|+++
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~   34 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP   34 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence            479999999999999999999999999999886

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=94.66  E-value=0.05  Score=48.22  Aligned_cols=34  Identities=24%  Similarity=0.308  Sum_probs=31.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      .+|+|||+|..|...|..|+..|++|+++|+++.
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~   38 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA   38 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            4699999999999999999999999999998763

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=94.59  E-value=0.057  Score=48.13  Aligned_cols=33  Identities=24%  Similarity=0.379  Sum_probs=30.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ++|+|||+|..|...|..|.+.|.+|+++.|..
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~   35 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR   35 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence            579999999999999999999999999999964

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=94.57  E-value=0.052  Score=48.18  Aligned_cols=32  Identities=22%  Similarity=0.358  Sum_probs=29.9

Q ss_pred             eEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      +|+|||+|..|...|..|.+.|.+|+++++++
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~   33 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG   33 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence            69999999999999999999999999999854

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=94.49  E-value=0.056  Score=49.60  Aligned_cols=32  Identities=25%  Similarity=0.398  Sum_probs=29.4

Q ss_pred             eEEEECcCCCHHHHHHHHhhc--cCeEEEEEecC
Q 020533          188 NVLVVGSGNSGMEIALDLANH--AAKTSLVVRSP  219 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~--~~~v~~~~r~~  219 (325)
                      .|+|||+|.+|..+|..|++.  |.+|.++.+.+
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~   34 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGR   34 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            489999999999999999987  88999999987

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=94.46  E-value=0.056  Score=41.91  Aligned_cols=37  Identities=41%  Similarity=0.629  Sum_probs=33.6

Q ss_pred             CCCCCeEEEECcCCCHHHHHHHHhhccCe-EEEEEecC
Q 020533          183 PYGGKNVLVVGSGNSGMEIALDLANHAAK-TSLVVRSP  219 (325)
Q Consensus       183 ~~~~~~v~VvG~G~s~~e~a~~l~~~~~~-v~~~~r~~  219 (325)
                      .+.+++++|+|+|-+|--++..|...|.+ ++++.|+.
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~   46 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP   46 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred             CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence            56789999999999999999999999865 99999985

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=94.44  E-value=0.18  Score=45.24  Aligned_cols=63  Identities=10%  Similarity=0.162  Sum_probs=46.5

Q ss_pred             CCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcE-EEEEeecCCCCceeEEEEEeCeEEEcccCCCCCC
Q 020533           77 FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMW-NVKASNLLSPGREIEEYYSGRFLVVASGETTNPF  152 (325)
Q Consensus        77 ~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~-~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~  152 (325)
                      +.....+...+.+.+.+.|...  ..+++|++++.++  +.| .|.+.+        .+ +.||.||+|+|.++...
T Consensus       133 ~v~p~~l~~~l~~~~~~~g~~~--~~~~~v~~i~~~~--~~~~~v~~~~--------g~-~~a~~vV~a~G~~~~~l  196 (337)
T TIGR02352       133 HVDPRALLKALEKALEKLGVEI--IEHTEVQHIEIRG--EKVTAIVTPS--------GD-VQADQVVLAAGAWAGEL  196 (337)
T ss_pred             eEChHHHHHHHHHHHHHcCCEE--EccceEEEEEeeC--CEEEEEEcCC--------CE-EECCEEEEcCChhhhhc
Confidence            4456788888888888888654  8999999998754  444 344433        36 89999999999876543

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=94.44  E-value=0.062  Score=51.09  Aligned_cols=35  Identities=20%  Similarity=0.325  Sum_probs=32.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ...+|+|||+|+.|+.++..+...|.+|.++|.++
T Consensus       164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~  198 (509)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP  198 (509)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            35689999999999999999999999999999876

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.43  E-value=0.072  Score=47.57  Aligned_cols=35  Identities=20%  Similarity=0.234  Sum_probs=32.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      .+.+|.|||+|..|.++|..|.+.|++|++++|+.
T Consensus         3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~   37 (308)
T PRK14619          3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS   37 (308)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            34689999999999999999999999999999875

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.42  E-value=0.07  Score=48.08  Aligned_cols=34  Identities=29%  Similarity=0.476  Sum_probs=31.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ..+|+|||+|..|...|..|.+.|++|++++|+.
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~   37 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRP   37 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            3579999999999999999999999999999965

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.35  E-value=0.07  Score=47.66  Aligned_cols=33  Identities=24%  Similarity=0.438  Sum_probs=30.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      .+|.|||+|..|...|..|++.|++|+++|+++
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~   37 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME   37 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            479999999999999999999999999999875

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.29  E-value=0.062  Score=50.98  Aligned_cols=34  Identities=24%  Similarity=0.165  Sum_probs=31.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      .++|+|+|.|-+|.++|+.|.+.|.+|++.|.++
T Consensus         8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~   41 (468)
T PRK04690          8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCN   41 (468)
T ss_pred             CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence            5689999999999999999999999999999654

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=94.24  E-value=0.064  Score=40.10  Aligned_cols=32  Identities=28%  Similarity=0.452  Sum_probs=28.6

Q ss_pred             EEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533           10 VIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus        10 v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      |+|+|.|..|..++..|.+.+.+++++|+++.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~   32 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE   32 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence            68999999999999999998879999999873

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=94.22  E-value=0.074  Score=49.20  Aligned_cols=35  Identities=23%  Similarity=0.303  Sum_probs=32.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      ..+|+|+|+|+.|+.+|..++..|.+|+++|.++.
T Consensus       202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~  236 (413)
T cd00401         202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI  236 (413)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence            56899999999999999999999999999998763

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK07236 hypothetical protein; Provisional

Probab=94.21  E-value=0.054  Score=49.95  Aligned_cols=35  Identities=29%  Similarity=0.400  Sum_probs=32.7

Q ss_pred             CCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       186 ~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                      ..+|+|||+|.+|.-+|..|++.|.+|+++.|++.
T Consensus         6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (386)
T PRK07236          6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT   40 (386)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            47899999999999999999999999999999873

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=94.21  E-value=0.072  Score=47.35  Aligned_cols=30  Identities=27%  Similarity=0.282  Sum_probs=29.0

Q ss_pred             eEEEECCChHHHHHHHHHHhcCCCeEEEec
Q 020533            9 EVIMVGAGTSGLATAACLSLQSIPYVILER   38 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~   38 (325)
                      +|+|||+|..|...|..|.+.|.+|+++++
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            699999999999999999999999999998

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=94.20  E-value=0.047  Score=49.19  Aligned_cols=33  Identities=33%  Similarity=0.616  Sum_probs=29.3

Q ss_pred             eEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                      +|+|||+|.+|.-+|..|++.|.+|+++.|++.
T Consensus         3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~   35 (356)
T PF01494_consen    3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPD   35 (356)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence            699999999999999999999999999999873

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=94.19  E-value=0.062  Score=46.67  Aligned_cols=33  Identities=24%  Similarity=0.438  Sum_probs=26.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcC-------CCeEEEecC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQS-------IPYVILERE   39 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g-------~~v~v~e~~   39 (325)
                      ..+|+|||+|..||+.|..+.+..       .+|++++-.
T Consensus         3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Dr   42 (342)
T KOG3923|consen    3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDR   42 (342)
T ss_pred             CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCC
Confidence            358999999999999999888843       478888643

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=94.12  E-value=0.054  Score=50.35  Aligned_cols=33  Identities=24%  Similarity=0.444  Sum_probs=30.9

Q ss_pred             CeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      ++|+|||+|.+|+-+|..|++.|.+|+++.|.+
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~   34 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR   34 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            479999999999999999999999999999875

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=94.07  E-value=0.061  Score=54.66  Aligned_cols=37  Identities=19%  Similarity=0.262  Sum_probs=33.9

Q ss_pred             CCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       183 ~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      ...+|+|+|||+|.+|+.+|..|+..|.+||++.+.+
T Consensus       380 ~~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~  416 (1028)
T PRK06567        380 EPTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK  416 (1028)
T ss_pred             CCCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence            3468999999999999999999999999999999864

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=94.05  E-value=0.065  Score=49.93  Aligned_cols=33  Identities=21%  Similarity=0.247  Sum_probs=31.1

Q ss_pred             eEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            9 EVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      +|.|||.|..|+.+|..|++.|++|+++|+++.
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~   34 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE   34 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence            699999999999999999999999999998764

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=94.01  E-value=0.088  Score=43.78  Aligned_cols=33  Identities=21%  Similarity=0.338  Sum_probs=30.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERE   39 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~   39 (325)
                      ..+|+|||+|-.|..+|..|++.|+ +++++|..
T Consensus        21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            4689999999999999999999999 69999987

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=94.00  E-value=0.12  Score=43.01  Aligned_cols=35  Identities=20%  Similarity=0.302  Sum_probs=31.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ..++|+|+|.|-.|..+|+.|.+.|.+|+++|++.
T Consensus        27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~   61 (200)
T cd01075          27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE   61 (200)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            35689999999999999999999999999988764

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=93.98  E-value=0.085  Score=47.75  Aligned_cols=33  Identities=18%  Similarity=0.334  Sum_probs=30.7

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      .+|+|||+|..|...|..|.+.|++|++++++.
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~   35 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR   35 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence            469999999999999999999999999999864

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=93.85  E-value=0.08  Score=50.40  Aligned_cols=37  Identities=22%  Similarity=0.324  Sum_probs=32.2

Q ss_pred             CCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       183 ~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      ..+.++|+|||+|.+|+-+|..|.+.|-+|++++-++
T Consensus        12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARd   48 (501)
T KOG0029|consen   12 AGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARD   48 (501)
T ss_pred             ccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccC
Confidence            3345789999999999999999999999999987653

>PRK06847 hypothetical protein; Provisional

Probab=93.84  E-value=0.07  Score=48.86  Aligned_cols=35  Identities=34%  Similarity=0.491  Sum_probs=32.4

Q ss_pred             CCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       186 ~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                      .++|+|||+|.+|+-+|..|++.|.+|+++.|++.
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~   38 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE   38 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            46899999999999999999999999999999873

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=93.82  E-value=0.074  Score=41.24  Aligned_cols=32  Identities=19%  Similarity=0.277  Sum_probs=27.9

Q ss_pred             EEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533           10 VIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus        10 v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      ++|+|+|+.+.+++..+...|++|+++|.++.
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e   32 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE   32 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence            58999999999999999999999999998864

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=93.81  E-value=0.11  Score=46.28  Aligned_cols=33  Identities=27%  Similarity=0.408  Sum_probs=29.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCC-CeEEEecCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~   40 (325)
                      .+|+|||+|..|..+|..|+..|. +|+++|..+
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~   35 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE   35 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            479999999999999999999877 899999855

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=93.79  E-value=0.078  Score=50.61  Aligned_cols=34  Identities=21%  Similarity=0.290  Sum_probs=31.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      .+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e   39 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE   39 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            5799999999999999999999999999998864

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=93.78  E-value=0.099  Score=46.65  Aligned_cols=33  Identities=33%  Similarity=0.509  Sum_probs=29.9

Q ss_pred             eEEEECCChHHHHHHHHHHhcCC--CeEEEecCCC
Q 020533            9 EVIMVGAGTSGLATAACLSLQSI--PYVILERENC   41 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~--~v~v~e~~~~   41 (325)
                      +|+|||+|..|.++|..|+..|.  +++++|++..
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~   36 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA   36 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence            69999999999999999999994  7999998763

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=93.73  E-value=0.065  Score=44.19  Aligned_cols=32  Identities=38%  Similarity=0.744  Sum_probs=29.6

Q ss_pred             eEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      +|+|||+|.+|+.+|..|+..+.+++++.+.+
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~   32 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP   32 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence            58999999999999999999999999997766

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=93.70  E-value=0.12  Score=43.86  Aligned_cols=35  Identities=26%  Similarity=0.480  Sum_probs=31.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCC---eEEEecCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIP---YVILEREN   40 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~---v~v~e~~~   40 (325)
                      ...+|+|+|||-+|..+|..|.+.|.+   +.++||+.
T Consensus        24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g   61 (226)
T cd05311          24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG   61 (226)
T ss_pred             cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence            346899999999999999999999985   99999985

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=93.69  E-value=0.1  Score=46.20  Aligned_cols=34  Identities=24%  Similarity=0.420  Sum_probs=32.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ..+|+|||+|..|..++..|...|.+|+++++++
T Consensus       152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~  185 (296)
T PRK08306        152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS  185 (296)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            5789999999999999999999999999999885

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=93.69  E-value=0.13  Score=40.10  Aligned_cols=32  Identities=28%  Similarity=0.494  Sum_probs=29.6

Q ss_pred             eEEEECC-ChHHHHHHHHHHhcCC--CeEEEecCC
Q 020533            9 EVIMVGA-GTSGLATAACLSLQSI--PYVILEREN   40 (325)
Q Consensus         9 ~v~IIGa-G~~Gl~~a~~L~~~g~--~v~v~e~~~   40 (325)
                      +|+|||+ |..|.++|..|...++  +++++|.++
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~   36 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE   36 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence            7999999 9999999999999876  799999986

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=93.68  E-value=0.13  Score=41.38  Aligned_cols=34  Identities=26%  Similarity=0.346  Sum_probs=30.1

Q ss_pred             CCCeEEEECCCh-HHHHHHHHHHhcCCCeEEEecC
Q 020533            6 AGVEVIMVGAGT-SGLATAACLSLQSIPYVILERE   39 (325)
Q Consensus         6 ~~~~v~IIGaG~-~Gl~~a~~L~~~g~~v~v~e~~   39 (325)
                      ..++|+|||+|- +|..+|..|.++|.+++++.|.
T Consensus        43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~   77 (168)
T cd01080          43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK   77 (168)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence            457999999996 6999999999999999999865

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=93.68  E-value=0.093  Score=47.08  Aligned_cols=33  Identities=24%  Similarity=0.394  Sum_probs=30.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      .+|+|||+|..|..+|..|.+.|++|+++++++
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~   34 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDP   34 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            369999999999999999999999999999875

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=93.66  E-value=0.092  Score=48.95  Aligned_cols=36  Identities=28%  Similarity=0.382  Sum_probs=33.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY   42 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~   42 (325)
                      .++|+|+|-|-+|+++|+.|.+.|.+|+++|.++..
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~   42 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP   42 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence            678999999999999999999999999999976643

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=93.59  E-value=0.14  Score=45.76  Aligned_cols=35  Identities=31%  Similarity=0.411  Sum_probs=31.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC--CeEEEecCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI--PYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~--~v~v~e~~~~   41 (325)
                      ..+|+|||+|..|-++|..|...++  +++++|.+..
T Consensus         6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~   42 (315)
T PRK00066          6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKE   42 (315)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence            4699999999999999999999988  7999998653

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.56  E-value=0.11  Score=46.76  Aligned_cols=32  Identities=31%  Similarity=0.472  Sum_probs=30.0

Q ss_pred             eEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      +|+|||+|..|.+.|..|.+.|.+|++++|+.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence            59999999999999999999999999999864

>PRK05868 hypothetical protein; Validated

Probab=93.52  E-value=0.075  Score=48.79  Aligned_cols=34  Identities=32%  Similarity=0.437  Sum_probs=31.8

Q ss_pred             CeEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                      ++|+|||+|.+|+-+|..|++.|.+|+++.+++.
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~   35 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG   35 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence            4799999999999999999999999999999874

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=93.51  E-value=0.1  Score=45.90  Aligned_cols=34  Identities=29%  Similarity=0.306  Sum_probs=30.6

Q ss_pred             CeEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                      .+.+|||+|.+|.=+|..++++|.+|-++.|+++
T Consensus         2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~H   35 (374)
T COG0562           2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNH   35 (374)
T ss_pred             CcEEEECCchhHHHHHHHHHHcCCEEEEEecccc
Confidence            3689999999999999999999999999998863

>PRK08163 salicylate hydroxylase; Provisional

Probab=93.50  E-value=0.09  Score=48.57  Aligned_cols=35  Identities=34%  Similarity=0.491  Sum_probs=32.6

Q ss_pred             CCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       186 ~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                      ..+|+|||+|.+|.-+|..|++.|.+|+++.|++.
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~   38 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE   38 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence            46899999999999999999999999999999973

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=93.49  E-value=0.11  Score=49.50  Aligned_cols=34  Identities=21%  Similarity=0.274  Sum_probs=31.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      .+|+|||+|..|...|..|++.|++|+++|+++.
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~   38 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPE   38 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            3799999999999999999999999999998753

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=93.42  E-value=0.18  Score=47.62  Aligned_cols=35  Identities=31%  Similarity=0.311  Sum_probs=32.1

Q ss_pred             CCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       186 ~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                      .-+|+|||+|.+|.-+|..|++.|.+|.++.|++.
T Consensus        39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~   73 (450)
T PLN00093         39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD   73 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            45899999999999999999999999999999864

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.39  E-value=0.11  Score=49.59  Aligned_cols=34  Identities=26%  Similarity=0.411  Sum_probs=31.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ..+|+|+|.|.+|++++..|...|.+|++.|.++
T Consensus        12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~   45 (488)
T PRK03369         12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDP   45 (488)
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            4689999999999999999999999999999653

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=93.38  E-value=0.086  Score=49.54  Aligned_cols=33  Identities=30%  Similarity=0.499  Sum_probs=29.5

Q ss_pred             CeEEEECcCCCHHHHHHHHhhcc--CeEEEEEecC
Q 020533          187 KNVLVVGSGNSGMEIALDLANHA--AKTSLVVRSP  219 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~~--~~v~~~~r~~  219 (325)
                      ++|+|||+|.+|+-+|..|++.|  .+|++++.++
T Consensus         1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~   35 (451)
T PRK11883          1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASD   35 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCC
Confidence            57999999999999999999987  6899998754

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=93.34  E-value=0.15  Score=41.11  Aligned_cols=38  Identities=32%  Similarity=0.392  Sum_probs=33.2

Q ss_pred             CCCCCCeEEEECcCCC-HHHHHHHHhhccCeEEEEEecC
Q 020533          182 KPYGGKNVLVVGSGNS-GMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       182 ~~~~~~~v~VvG~G~s-~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      ..+.+++++|||+|.+ |.-+|..|.+.|.+|+++.|+.
T Consensus        40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~   78 (168)
T cd01080          40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT   78 (168)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc
Confidence            4578999999999985 8889999999998999999874

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=93.34  E-value=0.079  Score=49.21  Aligned_cols=50  Identities=20%  Similarity=0.369  Sum_probs=38.8

Q ss_pred             ccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhc-c-CeEEEEEecC
Q 020533          170 GEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANH-A-AKTSLVVRSP  219 (325)
Q Consensus       170 g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~-~-~~v~~~~r~~  219 (325)
                      +....+..|+.....+..+|+|||+|.+|+-+|..|++. | .+|+++.|+.
T Consensus        14 ~~~~~~~~~~~~~~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~   65 (407)
T TIGR01373        14 GHRGWKPAWRSPEPKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW   65 (407)
T ss_pred             cCCCCCcccCCCCCCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence            334445556665555667899999999999999999985 8 4899998863

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=93.28  E-value=0.087  Score=47.47  Aligned_cols=31  Identities=29%  Similarity=0.623  Sum_probs=29.7

Q ss_pred             eEEEECcCCCHHHHHHHHhhccCeEEEEEec
Q 020533          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRS  218 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~  218 (325)
                      +|+|||+|.+|+-+|..|++.|.+|+++.+.
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~   31 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG   31 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence            5899999999999999999999999999987

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=93.28  E-value=0.09  Score=46.10  Aligned_cols=32  Identities=31%  Similarity=0.546  Sum_probs=30.4

Q ss_pred             eEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      +|+|||+|.+|+-+|..|++.|.+|+++.|++
T Consensus         2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~   33 (295)
T TIGR02032         2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKS   33 (295)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            58999999999999999999999999999986

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK06753 hypothetical protein; Provisional

Probab=93.23  E-value=0.092  Score=48.07  Aligned_cols=33  Identities=15%  Similarity=0.360  Sum_probs=31.3

Q ss_pred             eEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                      +|+|||+|.+|.-+|..|++.|.+|++++|++.
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~   34 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES   34 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            699999999999999999999999999999984

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=93.22  E-value=0.078  Score=44.20  Aligned_cols=34  Identities=29%  Similarity=0.453  Sum_probs=28.6

Q ss_pred             CCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       186 ~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      ...|+|||+|.+|.-+|..|++.|.+|.++.|+.
T Consensus        17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~   50 (230)
T PF01946_consen   17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKL   50 (230)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSS
T ss_pred             cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCC
Confidence            4579999999999999999999999999999975

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=93.22  E-value=0.13  Score=46.93  Aligned_cols=33  Identities=24%  Similarity=0.405  Sum_probs=30.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhcC-CCeEEEecCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQS-IPYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g-~~v~v~e~~~   40 (325)
                      .+|+|||||-.|..+|..|++.+ .+|+|.||+.
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~   35 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK   35 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence            57999999999999999999998 8999999984

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=93.22  E-value=0.09  Score=49.22  Aligned_cols=39  Identities=23%  Similarity=0.430  Sum_probs=35.0

Q ss_pred             CCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC----Ceeec
Q 020533          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP----VHVLS  224 (325)
Q Consensus       186 ~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~----~~~~p  224 (325)
                      .++|+|||+|.+|.-.|..|.+.|.+++++.|++    .|..+
T Consensus         6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~   48 (448)
T KOG1399|consen    6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYT   48 (448)
T ss_pred             CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeec
Confidence            5799999999999999999999999999999985    46665

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=93.19  E-value=0.08  Score=48.50  Aligned_cols=29  Identities=45%  Similarity=0.655  Sum_probs=25.4

Q ss_pred             eEEEECcCCCHHHHHHHHhhccCeEEEEE
Q 020533          188 NVLVVGSGNSGMEIALDLANHAAKTSLVV  216 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~  216 (325)
                      +|+|||+|.+|+|.|..+++.|.+|.++.
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit   29 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLIT   29 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEe
Confidence            58999999999999999999999999984

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=93.17  E-value=0.37  Score=44.68  Aligned_cols=65  Identities=18%  Similarity=0.135  Sum_probs=46.7

Q ss_pred             CCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEE-EEEeecCCCCceeEEEEEeCeEEEcccCC-CCCC
Q 020533           78 VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWN-VKASNLLSPGREIEEYYSGRFLVVASGET-TNPF  152 (325)
Q Consensus        78 ~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~-v~~~~~~~~~~~~~~~~~ad~vIiAtG~~-~~p~  152 (325)
                      .+...+.+.|.+.+++.|...  ..+++|.+++.++  +.++ |.+.++.     ..+ +++|.+|+|+|.| +...
T Consensus       260 v~G~RL~~aL~~~~~~~Gg~i--l~g~~V~~i~~~~--~~v~~V~t~~g~-----~~~-l~AD~vVLAaGaw~S~gL  326 (419)
T TIGR03378       260 LLGIRLEEALKHRFEQLGGVM--LPGDRVLRAEFEG--NRVTRIHTRNHR-----DIP-LRADHFVLASGSFFSNGL  326 (419)
T ss_pred             CcHHHHHHHHHHHHHHCCCEE--EECcEEEEEEeeC--CeEEEEEecCCc-----cce-EECCEEEEccCCCcCHHH
Confidence            456788888888899888654  7888999988765  4444 3333321     147 8999999999987 5543

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=93.12  E-value=0.11  Score=45.64  Aligned_cols=32  Identities=19%  Similarity=0.131  Sum_probs=30.1

Q ss_pred             eEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      +|.|||.|..|.+.|..|.+.|++|.++|+++
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~   33 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE   33 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence            69999999999999999999999999999875

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.10  E-value=0.12  Score=49.23  Aligned_cols=36  Identities=31%  Similarity=0.407  Sum_probs=32.5

Q ss_pred             CCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       184 ~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      +.+++|+|||+|.+|+++|..|.+.|.+|+++.+++
T Consensus        14 ~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~   49 (480)
T PRK01438         14 WQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGD   49 (480)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            457899999999999999999999999999988664

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.07  E-value=0.13  Score=48.62  Aligned_cols=34  Identities=18%  Similarity=0.278  Sum_probs=31.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ..+|+|+|.|.+|+++|..|.+.|++|++.|+++
T Consensus        14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   47 (458)
T PRK01710         14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS   47 (458)
T ss_pred             CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence            3589999999999999999999999999999765

>PRK07233 hypothetical protein; Provisional

Probab=93.07  E-value=0.094  Score=48.95  Aligned_cols=32  Identities=22%  Similarity=0.430  Sum_probs=29.8

Q ss_pred             eEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      +|+|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~   32 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADD   32 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCC
Confidence            58999999999999999999999999998875

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=93.06  E-value=0.17  Score=42.21  Aligned_cols=34  Identities=26%  Similarity=0.481  Sum_probs=31.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~   40 (325)
                      ..+|+|||+|-.|..+|..|.+.|+ +++++|...
T Consensus        21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~   55 (202)
T TIGR02356        21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH   55 (202)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence            5689999999999999999999998 899999864

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=93.06  E-value=0.16  Score=39.70  Aligned_cols=32  Identities=22%  Similarity=0.402  Sum_probs=29.5

Q ss_pred             eEEEECCChHHHHHHHHHHhcCC-CeEEEecCC
Q 020533            9 EVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~   40 (325)
                      +|+|||+|-.|..+|..|.+.|+ +++++|...
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT   33 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence            48999999999999999999999 799999775

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=93.04  E-value=0.19  Score=45.06  Aligned_cols=42  Identities=21%  Similarity=0.316  Sum_probs=38.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK   48 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~   48 (325)
                      .+||+|.|.|..-...+..|+..|.+|..||+++.-|++...
T Consensus         6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~as   47 (434)
T COG5044           6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSAS   47 (434)
T ss_pred             cccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccc
Confidence            699999999999999999999999999999999998876443

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=93.03  E-value=0.12  Score=43.52  Aligned_cols=37  Identities=11%  Similarity=0.186  Sum_probs=32.5

Q ss_pred             CCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       183 ~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      ..++++|+|||||..|..=+..|.+.|++||++...-
T Consensus        22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i   58 (223)
T PRK05562         22 LSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKF   58 (223)
T ss_pred             ECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            4568899999999999999999999999999887653

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=93.00  E-value=0.14  Score=45.59  Aligned_cols=39  Identities=21%  Similarity=0.220  Sum_probs=32.9

Q ss_pred             CCCCCCCCeEEEECCChHHHHHHHHHHhcCC--CeEEEecCC
Q 020533            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSI--PYVILEREN   40 (325)
Q Consensus         1 M~~~~~~~~v~IIGaG~~Gl~~a~~L~~~g~--~v~v~e~~~   40 (325)
                      |+.+. ..+|+|||+|..|.+.|..|.+.|.  +|.++++++
T Consensus         1 ~~~~~-~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~   41 (307)
T PRK07502          1 MSAPL-FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA   41 (307)
T ss_pred             CCccC-CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence            55554 3579999999999999999999985  789999875

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=92.99  E-value=0.17  Score=44.02  Aligned_cols=34  Identities=21%  Similarity=0.400  Sum_probs=31.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~   40 (325)
                      ..+|+|||+|-.|..+|..|++.|+ +++|+|...
T Consensus        30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~   64 (268)
T PRK15116         30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD   64 (268)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            4689999999999999999999996 899999765

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=92.99  E-value=0.15  Score=44.97  Aligned_cols=34  Identities=24%  Similarity=0.416  Sum_probs=31.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ..+++|||+|..|..+|..|...|.+|++++|+.
T Consensus       151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~  184 (287)
T TIGR02853       151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSS  184 (287)
T ss_pred             CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999999999999999999999999875

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=92.99  E-value=0.21  Score=44.84  Aligned_cols=35  Identities=17%  Similarity=0.321  Sum_probs=31.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~~   41 (325)
                      ..+|+|||||..|..+|..|+..|+ +++++|.++.
T Consensus         6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~   41 (321)
T PTZ00082          6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN   41 (321)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence            3689999999999999999999996 8999998874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	325
4a9w_A	357	Flavin-Containing Monooxygenase From Stenotrophomon		1e-15
4aos_A	549	Oxidized Steroid Monooxygenase Bound To Nadp Length		3e-14
4ap1_A	549	Oxidized Steroid Monooxygenase Bound To Nadp Length		3e-14
4ap3_A	549	Oxidized Steroid Monooxygenase Bound To Nadp Length		3e-14
2ylz_A	542	Snapshots Of Enzymatic Baeyer-Villiger Catalysis: O		2e-13
2ylw_A	542	Snapshots Of Enzymatic Baeyer-Villiger Catalysis: O		2e-13
1w4x_A	542	Phenylacetone Monooxygenase, A Baeyer-villiger Mono		2e-13
2ylx_A	542	Snapshots Of Enzymatic Baeyer-Villiger Catalysis: O		3e-13
3uov_A	545	Crystal Structure Of Otemo (Fad Bound Form 1) Lengt		5e-11
3gwd_A	540	Closed Crystal Structure Of Cyclohexanone Monooxyge		1e-10
3ucl_A	573	Cyclohexanone-Bound Crystal Structure Of Cyclohexan		1e-10
2xvi_A	464	Crystal Structure Of The Mutant Bacterial Flavin Co		1e-04
2xve_A	464	Crystal Structure Of Bacterial Flavin-Containing Mo		2e-04
2xvf_A	464	Crystal Structure Of Bacterial Flavin-Containing Mo		3e-04
2xls_A	461	Joint-Functions Of Protein Residues And Nadp(H) In		8e-04
2xlr_A	461	Joint-Functions Of Protein Residues And Nadp(H) In		8e-04
2xlp_A	461	Joint-Functions Of Protein Residues And Nadp(H) In		8e-04
2vq7_A	461	Bacterial Flavin-Containing Monooxygenase In Comple		8e-04

>pdb|4A9W|A Chain A, Flavin-Containing Monooxygenase From Stenotrophomonas Maltophilia Length = 357

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 98/212 (46%), Gaps = 19/212 (8%)
Query: 8   VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPH 67
           V+V+++G G SGL+    L    + YVIL+ E      W+ +++  L L     +  +P 
Sbjct: 4   VDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQ-HAWHSLHLFSPAGWSSIPG 62
Query: 68  LPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLS 127
            P P+S   + +RA+ + +L  Y   + + P +R  R    + + E   +       +  
Sbjct: 63  WPMPASQGPYPARAEVLAYLAQYEQKYAL-PVLRPIRVQRVSHFGERLRV-------VAR 114
Query: 128 PGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGK 187
            GR+    +  R ++ A+G     +TP+ +GL SF       G  +HS  Y    P+ G 
Sbjct: 115 DGRQ----WLARAVISATGTWGEAYTPEYQGLESFA------GIQLHSAHYSTPAPFAGM 164
Query: 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219
            V ++G GNSG +I  +++  A  T +    P
Sbjct: 165 RVAIIGGGNSGAQILAEVSTVAETTWITQHEP 196

>pdb|4AOS|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp Length = 549

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 99/215 (46%), Gaps = 19/215 (8%)
Query: 9   EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAK---QFCQL 65
           +V++VGAG +GL        Q +     E  +    +W    Y   R  +      +   
Sbjct: 23  DVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFS 82
Query: 66  PHLPFPSSY-PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASN 124
           P L    ++   + ++ + + +L+H    F++   IR+   V SA  DE    W V+   
Sbjct: 83  PELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDR 142
Query: 125 LLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQY-KNGKP 183
               G E+    S RFLVVA+G  +N  TP   GL  F      TG+++H+ ++  +G  
Sbjct: 143 ----GDEV----SARFLVVAAGPLSNANTPAFDGLDRF------TGDIVHTARWPHDGVD 188
Query: 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRS 218
           + GK V V+G+G+SG++    +A  A +  +  RS
Sbjct: 189 FTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRS 223

>pdb|4AP1|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp Length = 549

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 99/215 (46%), Gaps = 19/215 (8%)
Query: 9   EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAK---QFCQL 65
           +V++VGAG +GL        Q +     E  +    +W    Y   R  +      +   
Sbjct: 23  DVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFS 82
Query: 66  PHLPFPSSY-PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASN 124
           P L    ++   + ++ + + +L+H    F++   IR+   V SA  DE    W V+   
Sbjct: 83  PELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDR 142
Query: 125 LLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQY-KNGKP 183
               G E+    S RFLVVA+G  +N  TP   GL  F      TG+++H+ ++  +G  
Sbjct: 143 ----GDEV----SARFLVVAAGPLSNANTPAFDGLDRF------TGDIVHTARWPHDGVD 188
Query: 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRS 218
           + GK V V+G+G+SG++    +A  A +  +  RS
Sbjct: 189 FTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRS 223

>pdb|4AP3|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp Length = 549

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 99/215 (46%), Gaps = 19/215 (8%)
Query: 9   EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAK---QFCQL 65
           +V++VGAG +GL        Q +     E  +    +W    Y   R  +      +   
Sbjct: 23  DVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFS 82
Query: 66  PHLPFPSSY-PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASN 124
           P L    ++   + ++ + + +L+H    F++   IR+   V SA  DE    W V+   
Sbjct: 83  PELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDR 142
Query: 125 LLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQY-KNGKP 183
               G E+    S RFLVVA+G  +N  TP   GL  F      TG+++H+ ++  +G  
Sbjct: 143 ----GDEV----SARFLVVAAGPLSNANTPAFDGLDRF------TGDIVHTARWPHDGVD 188
Query: 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRS 218
           + GK V V+G+G+SG++    +A  A +  +  RS
Sbjct: 189 FTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRS 223

>pdb|2YLZ|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen Activation And Intermediate Stabilization: Met446gly Mutant Length = 542

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 101/223 (45%), Gaps = 31/223 (13%)
Query: 8   VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPH 67
           V+V++VGAG SGL     L        ++E       +W    Y   R       C +  
Sbjct: 17  VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGAR-------CDIES 69
Query: 68  LPFPSSY-----------PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATN 116
           + +  S+             + S+ + + +++     F++   I +  +V +A++DEATN
Sbjct: 70  IEYCYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATN 129
Query: 117 MWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHST 176
            W V  ++    G  I      R+L++ASG+ + P  P+  GL  F  +   TG   H  
Sbjct: 130 TWTVDTNH----GDRIR----ARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEP 181
Query: 177 QYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219
                  + G+ V V+G+G+SG++++  +A  AA+  +  R+P
Sbjct: 182 -----VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP 219

>pdb|2YLW|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen Activation And Intermediate Stabilization: Arg337lys Mutant In Complex With Mes Length = 542

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 101/223 (45%), Gaps = 31/223 (13%)
Query: 8   VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPH 67
           V+V++VGAG SGL     L        ++E       +W    Y   R       C +  
Sbjct: 17  VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGAR-------CDIES 69
Query: 68  LPFPSSY-----------PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATN 116
           + +  S+             + S+ + + +++     F++   I +  +V +A++DEATN
Sbjct: 70  IEYCYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATN 129
Query: 117 MWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHST 176
            W V  ++    G  I      R+L++ASG+ + P  P+  GL  F  +   TG   H  
Sbjct: 130 TWTVDTNH----GDRIR----ARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEP 181
Query: 177 QYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219
                  + G+ V V+G+G+SG++++  +A  AA+  +  R+P
Sbjct: 182 -----VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP 219

>pdb|1W4X|A Chain A, Phenylacetone Monooxygenase, A Baeyer-villiger Monooxygenase Length = 542

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 101/223 (45%), Gaps = 31/223 (13%)
Query: 8   VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPH 67
           V+V++VGAG SGL     L        ++E       +W    Y   R       C +  
Sbjct: 17  VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGAR-------CDIES 69
Query: 68  LPFPSSY-----------PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATN 116
           + +  S+             + S+ + + +++     F++   I +  +V +A++DEATN
Sbjct: 70  IEYCYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATN 129
Query: 117 MWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHST 176
            W V  ++    G  I      R+L++ASG+ + P  P+  GL  F  +   TG   H  
Sbjct: 130 TWTVDTNH----GDRIR----ARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEP 181
Query: 177 QYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219
                  + G+ V V+G+G+SG++++  +A  AA+  +  R+P
Sbjct: 182 -----VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP 219

>pdb|2YLX|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen Activation And Intermediate Stabilization: Asp66ala Mutant In Complex With Nadp And Mes Length = 542

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 101/223 (45%), Gaps = 31/223 (13%)
Query: 8   VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPH 67
           V+V++VGAG SGL     L        ++E       +W    Y   R       C +  
Sbjct: 17  VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGAR-------CAIES 69
Query: 68  LPFPSSY-----------PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATN 116
           + +  S+             + S+ + + +++     F++   I +  +V +A++DEATN
Sbjct: 70  IEYCYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATN 129
Query: 117 MWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHST 176
            W V  ++    G  I      R+L++ASG+ + P  P+  GL  F  +   TG   H  
Sbjct: 130 TWTVDTNH----GDRIR----ARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEP 181
Query: 177 QYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219
                  + G+ V V+G+G+SG++++  +A  AA+  +  R+P
Sbjct: 182 -----VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP 219

>pdb|3UOV|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 1) Length = 545

Iteration: 1
 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 98/229 (42%), Gaps = 25/229 (10%)
Query: 2   KEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQ 61
           + ++  ++ +++GAG +G+  A  ++   +  + +E        W    Y   RL     
Sbjct: 4   RAKSPALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESY 63
Query: 62  ----FCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNM 117
               F     +P       F S+ + + +++      ++    R+   V +A Y E   +
Sbjct: 64  AYGYFALKGIIPEWEWSENFASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRL 123
Query: 118 WNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQ 177
           W V   N        EE  + RFL+ A+G  +    PDI+G+ SF       GE  HS++
Sbjct: 124 WEVTLDN--------EEVVTCRFLISATGPLSASRMPDIKGIDSF------KGESFHSSR 169
Query: 178 Y---KNGKPYG----GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219
           +     G P G    GK V V+G+G +G++I    A  A +  +  R+P
Sbjct: 170 WPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTP 218

>pdb|3GWD|A Chain A, Closed Crystal Structure Of Cyclohexanone Monooxygenase Length = 540

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 95/217 (43%), Gaps = 19/217 (8%)
Query: 8   VEVIMVGAGTSGLATAACLSLQ-SIPYVILERENCYASIWKKYSY----DRLRLHLAKQF 62
           V+ +++GAG  G+     L  +  +  V  ++ +     W    Y         HL +  
Sbjct: 9   VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFS 68
Query: 63  CQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKA 122
                L   +    ++++ + +E+L+  V  F++    ++   V SA Y +  N+W V  
Sbjct: 69  FDRDLLQESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTT 128
Query: 123 SNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGK 182
            +         E Y  +++V A G  +    P++ GL +F       GE IH+  +  GK
Sbjct: 129 DH--------GEVYRAKYVVNAVGLLSAINFPNLPGLDTF------EGETIHTAAWPEGK 174
Query: 183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219
              G+ V V+G+G++G ++   LA      ++ VR+P
Sbjct: 175 SLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTP 211

>pdb|3UCL|A Chain A, Cyclohexanone-Bound Crystal Structure Of Cyclohexanone Monooxygenase In The Rotated Conformation Length = 573

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 95/217 (43%), Gaps = 19/217 (8%)
Query: 8   VEVIMVGAGTSGLATAACLSLQ-SIPYVILERENCYASIWKKYSY----DRLRLHLAKQF 62
           V+ +++GAG  G+     L  +  +  V  ++ +     W    Y         HL +  
Sbjct: 42  VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFS 101
Query: 63  CQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKA 122
                L   +    ++++ + +E+L+  V  F++    ++   V SA Y +  N+W V  
Sbjct: 102 FDRDLLQESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTT 161
Query: 123 SNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGK 182
            +         E Y  +++V A G  +    P++ GL +F       GE IH+  +  GK
Sbjct: 162 DH--------GEVYRAKYVVNAVGLLSAINFPNLPGLDTF------EGETIHTAAWPEGK 207
Query: 183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219
              G+ V V+G+G++G ++   LA      ++ VR+P
Sbjct: 208 SLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTP 244

>pdb|2XVI|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin Containing Monooxygenase (Y207s) Length = 464

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/140 (21%), Positives = 61/140 (43%), Gaps = 12/140 (8%)
Query: 72  SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE 131
           +SYP    R    +++   V    +   IR+  +V    ++E +  + V   +  +    
Sbjct: 95  ASYP---PREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIY 151
Query: 132 IEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLV 191
            EE+    ++V  +G  + P+ P+  G   F       G ++H+  +++   +  K VL+
Sbjct: 152 SEEF---DYVVCCTGHFSTPYVPEFEGFEKF------GGRILHAHDFRDALEFKDKTVLL 202
Query: 192 VGSGNSGMEIALDLANHAAK 211
           VGS +S  +I      + AK
Sbjct: 203 VGSSSSAEDIGSQCYKYGAK 222

>pdb|2XVE|A Chain A, Crystal Structure Of Bacterial Flavin-Containing Monooxygenase Length = 464

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/140 (21%), Positives = 60/140 (42%), Gaps = 12/140 (8%)
Query: 72  SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE 131
           +SYP    R    +++   V    +   IR+  +V    ++E +  + V   +  +    
Sbjct: 95  ASYP---PREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIY 151
Query: 132 IEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLV 191
            EE+    ++V  +G  + P+ P+  G   F       G ++H+  +++   +  K VL+
Sbjct: 152 SEEF---DYVVCCTGHFSTPYVPEFEGFEKF------GGRILHAHDFRDALEFKDKTVLL 202
Query: 192 VGSGNSGMEIALDLANHAAK 211
           VGS  S  +I      + AK
Sbjct: 203 VGSSYSAEDIGSQCYKYGAK 222

>pdb|2XVF|A Chain A, Crystal Structure Of Bacterial Flavin-Containing Monooxygenase Length = 464

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/140 (21%), Positives = 60/140 (42%), Gaps = 12/140 (8%)
Query: 72  SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE 131
           +SYP    R    +++   V    +   IR+  +V    ++E +  + V   +  +    
Sbjct: 95  ASYP---PREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIY 151
Query: 132 IEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLV 191
            EE+    ++V  +G  + P+ P+  G   F       G ++H+  +++   +  K VL+
Sbjct: 152 SEEF---DYVVCCTGHFSTPYVPEFEGFEKF------GGRILHAHDFRDALEFKDKTVLL 202
Query: 192 VGSGNSGMEIALDLANHAAK 211
           VGS  S  +I      + AK
Sbjct: 203 VGSSYSAEDIGSQCYKYGAK 222

>pdb|2XLS|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-Activation By Flavin-Containing Monooxygenase: Asn78lys Mutant Length = 461

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/142 (21%), Positives = 60/142 (42%), Gaps = 16/142 (11%)
Query: 72  SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE 131
           +SYP    R    +++   V    +   IR+  +V    ++E +  + V   +  +    
Sbjct: 100 ASYP---PREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTT---- 152
Query: 132 IEEYYSGRF--LVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNV 189
            +  YS  F  +V  +G  + P+ P+  G   F       G ++H+  +++   +  K V
Sbjct: 153 -DTIYSAAFDYVVCCTGHFSTPYVPEFEGFEKF------GGRILHAHDFRDALEFKDKTV 205
Query: 190 LVVGSGNSGMEIALDLANHAAK 211
           L+VGS  S  +I      + AK
Sbjct: 206 LLVGSSYSAEDIGSQCYKYGAK 227

>pdb|2XLR|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-Activation By Flavin-Containing Monooxygenase: Asn78asp Mutant Length = 461

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/142 (21%), Positives = 60/142 (42%), Gaps = 16/142 (11%)
Query: 72  SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE 131
           +SYP    R    +++   V    +   IR+  +V    ++E +  + V   +  +    
Sbjct: 100 ASYP---PREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTT---- 152
Query: 132 IEEYYSGRF--LVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNV 189
            +  YS  F  +V  +G  + P+ P+  G   F       G ++H+  +++   +  K V
Sbjct: 153 -DTIYSAAFDYVVCCTGHFSTPYVPEFEGFEKF------GGRILHAHDFRDALEFKDKTV 205
Query: 190 LVVGSGNSGMEIALDLANHAAK 211
           L+VGS  S  +I      + AK
Sbjct: 206 LLVGSSYSAEDIGSQCYKYGAK 227

>pdb|2XLP|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen- Activation By Flavin-Containing Monooxygenase: Asn78ser Mutant Length = 461

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/142 (21%), Positives = 59/142 (41%), Gaps = 16/142 (11%)
Query: 72  SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE 131
           +SYP    R    +++   V    +   IR+  +V    ++E +  + V   +       
Sbjct: 100 ASYP---PREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQD-----HT 151
Query: 132 IEEYYSGRF--LVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNV 189
            +  YS  F  +V  +G  + P+ P+  G   F       G ++H+  +++   +  K V
Sbjct: 152 TDTIYSAAFDYVVCCTGHFSTPYVPEFEGFEKF------GGRILHAHDFRDALEFKDKTV 205
Query: 190 LVVGSGNSGMEIALDLANHAAK 211
           L+VGS  S  +I      + AK
Sbjct: 206 LLVGSSYSAEDIGSQCYKYGAK 227

>pdb|2VQ7|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With Nadp: Native Data Length = 461

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/142 (21%), Positives = 60/142 (42%), Gaps = 16/142 (11%)
Query: 72  SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE 131
           +SYP    R    +++   V    +   IR+  +V    ++E +  + V   +  +    
Sbjct: 100 ASYP---PREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTT---- 152
Query: 132 IEEYYSGRF--LVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNV 189
            +  YS  F  +V  +G  + P+ P+  G   F       G ++H+  +++   +  K V
Sbjct: 153 -DTIYSAAFDYVVCCTGHFSTPYVPEFEGFEKF------GGRILHAHDFRDALEFKDKTV 205
Query: 190 LVVGSGNSGMEIALDLANHAAK 211
           L+VGS  S  +I      + AK
Sbjct: 206 LLVGSSYSAEDIGSQCYKYGAK 227

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	325
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	4e-84
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	1e-41
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	3e-37
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	5e-33
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	7e-32
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	1e-25
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	2e-25
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	5e-25
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	5e-24
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	3e-08
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	2e-07
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	7e-07
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	9e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	2e-06
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	1e-05
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	1e-05
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	3e-05
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	3e-05
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	5e-05
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	5e-05
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	6e-05
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	7e-05
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	7e-05
3r9u_A	315	Thioredoxin reductase; structural genomics, center	8e-05
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	2e-04
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	2e-04
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	3e-04
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	4e-04
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	5e-04
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	7e-04

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357

 Score =  256 bits (657), Expect = 4e-84
 Identities = 66/285 (23%), Positives = 113/285 (39%), Gaps = 37/285 (12%)

Query: 8   VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPH 67
           V+V+++G G SGL+    L    + YVIL+ E      W+   +  L L     +  +P 
Sbjct: 4   VDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHA-WHSLHLFSPAGWSSIPG 62

Query: 68  LPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLS 127
            P P+S   + +RA+ + +L  Y   + +   +     V+  S+        V A +   
Sbjct: 63  WPMPASQGPYPARAEVLAYLAQYEQKYAL--PVLRPIRVQRVSHFGER--LRVVARD--- 115

Query: 128 PGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGK 187
            GR+    +  R ++ A+G     +TP+ +GL SF       G  +HS  Y    P+ G 
Sbjct: 116 -GRQ----WLARAVISATGTWGEAYTPEYQGLESF------AGIQLHSAHYSTPAPFAGM 164

Query: 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDTLM 247
            V ++G GNSG +I  +++  A  T +    P  +        G VLF+     W     
Sbjct: 165 RVAIIGGGNSGAQILAEVSTVAETTWITQHEPAFLADD---VDGRVLFERATERW----- 216

Query: 248 VMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIK 292
                      ++    +P   P          PV+DA     + 
Sbjct: 217 ----------KAQQEGREPDLPPGGFGDIVMVPPVLDARARGVLA 251

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369

 Score =  147 bits (372), Expect = 1e-41
 Identities = 43/242 (17%), Positives = 82/242 (33%), Gaps = 41/242 (16%)

Query: 8   VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPH 67
            +V ++GAG +G+  A  L    I  VI+  +      +K +     R            
Sbjct: 5   HKVAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHSFKHW-PKSTRTITPSFTSNGFG 63

Query: 68  L-----------PFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATN 116
           +           P  +     +S   + E+L    +H+ +  +I     V + S D+A  
Sbjct: 64  MPDMNAISMDTSPAFTFNEEHISGETYAEYLQVVANHYEL--NIFENTVVTNISADDAY- 120

Query: 117 MWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHST 176
            + +  +          E Y   ++ VA+G+   P  P   G              IH +
Sbjct: 121 -YTIATT---------TETYHADYIFVATGDYNFPKKPFKYG--------------IHYS 156

Query: 177 QYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFK 236
           + ++   +     +V+G   SG + A  LA + +  +L   +             V L  
Sbjct: 157 EIEDFDNFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPD--ADPSVRLSP 214

Query: 237 YV 238
           Y 
Sbjct: 215 YT 216

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* Length = 447

 Score =  137 bits (345), Expect = 3e-37
 Identities = 52/295 (17%), Positives = 96/295 (32%), Gaps = 50/295 (16%)

Query: 13  VGAGTSGLATAACLSLQSIPY--VILERENCYASIWKKYS-------------------- 50
           +GAG SGL TA  L  +       + ER      +W  Y+                    
Sbjct: 12  IGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWN-YTSTLSNKLPVPSTNPILTTEP 70

Query: 51  --------------YDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNI 96
                         Y  L+ +   +        F      F  R    E+   Y      
Sbjct: 71  IVGPAALPVYPSPLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLL- 129

Query: 97  GPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDI 156
            P I+    V           W V      +     ++ +    + + +G    P+ P+I
Sbjct: 130 -PFIKLATDVLDIEKK--DGSWVVTYKGTKAGSPISKDIFD--AVSICNGHYEVPYIPNI 184

Query: 157 RGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVV 216
           +GL  +  +    G V+HS+ ++  + + G++VLVVG  +S  ++   L   A       
Sbjct: 185 KGLDEY--AKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQS 242

Query: 217 RSPVHVLSREMVYLGVVLFKYVP-----FGWVDTLMVMLSRLVYGDLSKYGIPKP 266
                 +  E +     + K+ P     +     ++  + R++Y     Y +P P
Sbjct: 243 LLGGGDIQNESLQQVPEITKFDPTTREIYLKGGKVLSNIDRVIYCTGYLYSVPFP 297

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* Length = 464

 Score =  126 bits (317), Expect = 5e-33
 Identities = 44/285 (15%), Positives = 96/285 (33%), Gaps = 40/285 (14%)

Query: 10  VIMVGAGTSGLATAACLS------LQSIPYVILERENCYASIWKKYS------------- 50
           + ++GAG SG+A             +    V  E++  +   W  Y+             
Sbjct: 5   IAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWN-YTWRTGLDENGEPVH 63

Query: 51  ---YDRLRLHLAKQFCQLPHLPFPSSY----PMFVSRAQFIEHLDHYVSHFNIGPSIRYQ 103
              Y  L  +  K+  +     F   +      +  R    +++   V    +   IR+ 
Sbjct: 64  SSMYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFN 123

Query: 104 RSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC 163
            +V    ++E +  + V   +  +     EE+    ++V  +G  + P+ P+  G   F 
Sbjct: 124 TAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEF---DYVVCCTGHFSTPYVPEFEGFEKF- 179

Query: 164 SSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVL 223
                 G ++H+  +++   +  K VL+VGS  S  +I      + AK  +       + 
Sbjct: 180 -----GGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMG 234

Query: 224 SREMVYLG----VVLFKYVPFGWVDTLMVMLSRLVYGDLSKYGIP 264
            +          +V        + D     +  ++      +  P
Sbjct: 235 YKWPENWDERPNLVRVDTENAYFADGSSEKVDAIILCTGYIHHFP 279

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* Length = 463

 Score =  122 bits (308), Expect = 7e-32
 Identities = 50/299 (16%), Positives = 89/299 (29%), Gaps = 53/299 (17%)

Query: 10  VIMVGAGTSGLATAACLSLQSIP-----YVILERENCYASIWKK---YSYDRLRLHLAKQ 61
           +I VG G S +A A  L  ++        + L+++  Y   W      S   L++   K 
Sbjct: 33  LIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYR--WHGNTLVSQSELQISFLKD 90

Query: 62  FCQL-----------------PHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQR 104
              L                   + F +    +  R +F ++L    SHF      RY  
Sbjct: 91  LVSLRNPTSPYSFVNYLHKHDRLVDFINLGTFYPCRMEFNDYLRWVASHF--QEQSRYGE 148

Query: 105 SVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS 164
            V       +            +   E     + R LVV+ G    P  P +        
Sbjct: 149 EVLRIEPMLSAGQVEALRVISRNADGEELVRTT-RALVVSPG--GTPRIPQVFRALKG-- 203

Query: 165 SATGTGEVIHSTQY------KNGKPYGGKNVLVVGSGNSGMEIALDLAN--HAAKTSLVV 216
                G V H +QY      +         + ++G G S  E  +DL +   + +  +++
Sbjct: 204 ----DGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMIL 259

Query: 217 RSPVHV------LSREMVYLGVV-LFKYVPFGWVDTLMVMLSRLVYGDLSKYGIPKPRE 268
           R+             E+       L         + L+       Y  +    I +   
Sbjct: 260 RASALKPADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNYSVVDTDLIERIYG 318

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* Length = 540

 Score =  106 bits (266), Expect = 1e-25
 Identities = 52/289 (17%), Positives = 106/289 (36%), Gaps = 43/289 (14%)

Query: 8   VEVIMVGAGTSGLATAACLSLQSI-PYVILE---------RENCY-------ASIWKKYS 50
           V+ +++GAG  G+     L  +     V  +           N Y        S    Y 
Sbjct: 9   VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHL--YR 66

Query: 51  YDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESAS 110
           +        +   Q     + ++Y    ++ + +E+L+  V  F++    ++   V SA 
Sbjct: 67  FS-----FDRDLLQEST--WKTTYI---TQPEILEYLEDVVDRFDLRRHFKFGTEVTSAL 116

Query: 111 YDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTG 170
           Y +  N+W V   +    G      Y  +++V A G  +    P++ GL +F       G
Sbjct: 117 YLDDENLWEVTTDH----GEV----YRAKYVVNAVGLLSAINFPNLPGLDTF------EG 162

Query: 171 EVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYL 230
           E IH+  +  GK   G+ V V+G+G++G ++   LA      ++ VR+P + +      +
Sbjct: 163 ETIHTAAWPEGKSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNRPV 222

Query: 231 GVVLFKYVPFGWVDTLMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGK 279
                  +   +        +  V     +  +P            + +
Sbjct: 223 NPEQIAEIKADYDRIWERAKNSAVAFGFEESTLPAMSVSEEERNRIFQE 271

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* Length = 549

 Score =  105 bits (264), Expect = 2e-25
 Identities = 59/236 (25%), Positives = 98/236 (41%), Gaps = 45/236 (19%)

Query: 8   VEVIMVGAGTSGLATAACLSLQSIPYVILE---------RENCY-------ASIWKKYSY 51
            +V++VGAG +GL        Q +     E           N Y        S      Y
Sbjct: 22  YDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVES----IDY 77

Query: 52  DRLRLHLAKQFCQLPHLPFPSSYP-MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESAS 110
                     +   P L    ++   + ++ + + +L+H    F++   IR+   V SA 
Sbjct: 78  ---------SYSFSPELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAV 128

Query: 111 YDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTG 170
            DE    W V+       G E     S RFLVVA+G  +N  TP   GL  F      TG
Sbjct: 129 LDEEGLRWTVRTDR----GDE----VSARFLVVAAGPLSNANTPAFDGLDRF------TG 174

Query: 171 EVIHSTQY-KNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSR 225
           +++H+ ++  +G  + GK V V+G+G+SG++    +A  A +  +  RS  + +  
Sbjct: 175 DIVHTARWPHDGVDFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANYSIPA 230

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* Length = 542

 Score =  104 bits (261), Expect = 5e-25
 Identities = 54/236 (22%), Positives = 102/236 (43%), Gaps = 45/236 (19%)

Query: 8   VEVIMVGAGTSGLATAACLSLQSIPYVILE---------RENCY-------ASIWKKYSY 51
           V+V++VGAG SGL     L        ++E           N Y        SI   YS+
Sbjct: 17  VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSF 76

Query: 52  DRLRLHLAKQFCQLPHLPFPSSYP-MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESAS 110
                           +    ++   + S+ + + +++     F++   I +  +V +A+
Sbjct: 77  S-------------EEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAA 123

Query: 111 YDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTG 170
           +DEATN W V  ++    G         R+L++ASG+ + P  P+  GL  F       G
Sbjct: 124 FDEATNTWTVDTNH----GDR----IRARYLIMASGQLSVPQLPNFPGLKDF------AG 169

Query: 171 EVIHSTQY-KNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSR 225
            + H+  +      + G+ V V+G+G+SG++++  +A  AA+  +  R+P   +  
Sbjct: 170 NLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPA 225

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* Length = 545

 Score =  101 bits (253), Expect = 5e-24
 Identities = 51/239 (21%), Positives = 90/239 (37%), Gaps = 49/239 (20%)

Query: 8   VEVIMVGAGTSGLATAACLSLQSIPYVILE---------RENCY-------ASIWKKYSY 51
           ++ +++GAG +G+  A  ++   +  + +E           N Y        S    Y Y
Sbjct: 10  LDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYA--YGY 67

Query: 52  DRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASY 111
                     F     +P       F S+ + + +++      ++    R+   V +A Y
Sbjct: 68  ----------FALKGIIPEWEWSENFASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARY 117

Query: 112 DEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGE 171
            E   +W V   N            + RFL+ A+G  +    PDI+G+ SF       GE
Sbjct: 118 VENDRLWEVTLDN----EEV----VTCRFLISATGPLSASRMPDIKGIDSF------KGE 163

Query: 172 VIHS-------TQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVL 223
             HS            G  + GK V V+G+G +G++I    A  A +  +  R+P    
Sbjct: 164 SFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNWCT 222

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Length = 332

 Score = 53.4 bits (129), Expect = 3e-08
 Identities = 42/227 (18%), Positives = 87/227 (38%), Gaps = 52/227 (22%)

Query: 1   MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN-----CYASIWKKYSYDRLR 55
           M+E     ++ ++G G  GL TA    ++     I+E          A   +KY YD   
Sbjct: 1   MREDTKVYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYD--- 57

Query: 56  LHLAKQFCQLPHLPFPSSYPMF--VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDE 113
                                F  +   + I +L   ++ F+   +I  +++VES     
Sbjct: 58  ------------------VAGFPKIRAQELINNLKEQMAKFD--QTICLEQAVESVEKQA 97

Query: 114 ATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE-TTNPFTPDIRGLCSFCSSATGTGEV 172
              ++ +  +         E +YS + +++ +G     P   ++     +     G    
Sbjct: 98  -DGVFKLVTNE--------ETHYS-KTVIITAGNGAFKPRKLELENAEQY----EGKN-- 141

Query: 173 IHSTQY--KNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVR 217
           +H   Y   + + + G+ V ++G G+S ++ AL L   A + S++ R
Sbjct: 142 LH---YFVDDLQKFAGRRVAILGGGDSAVDWALMLEPIAKEVSIIHR 185

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Length = 335

 Score = 51.0 bits (123), Expect = 2e-07
 Identities = 47/218 (21%), Positives = 85/218 (38%), Gaps = 52/218 (23%)

Query: 10  VIMVGAGTSGLATAACLSLQSIPYVILERE-----NCYASIWKKYSYDRLRLHLAKQFCQ 64
           V++VGAG +GL     + ++ + +  ++          A   +KY YD            
Sbjct: 8   VLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTALYPEKYIYD------------ 55

Query: 65  LPHLPFPSSYPMF--VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKA 122
                       F  V     ++ L   V+ FN  P        E+   +   +++ V  
Sbjct: 56  ---------VAGFPKVYAKDLVKGLVEQVAPFN--PVYSLGERAETLEREG--DLFKVTT 102

Query: 123 SNLLSPGREIEEYYSGRFLVVASGE-TTNPFTPDIRGLCSFCSSATGTGEVIHSTQY--K 179
           S     G      Y+ + +++A+G     P      G   F     G G  ++   Y  K
Sbjct: 103 SQ----GNA----YTAKAVIIAAGVGAFEPRRIGAPGEREF----EGRG--VY---YAVK 145

Query: 180 NGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVR 217
           +   + GK VL+VG G+S ++ AL+L + A + +L+ R
Sbjct: 146 SKAEFQGKRVLIVGGGDSAVDWALNLLDTARRITLIHR 183

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 Length = 310

 Score = 49.0 bits (118), Expect = 7e-07
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVR 217
           + GK V V+G GNSG+E A+DLA      +L+  
Sbjct: 142 FKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEF 175

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} Length = 360

 Score = 48.8 bits (117), Expect = 9e-07
 Identities = 43/215 (20%), Positives = 81/215 (37%), Gaps = 42/215 (19%)

Query: 10  VIMVGAGTSGLATAACLSLQSIPYVILEREN-----CYASIWKKYSYDRLRLHLAKQFCQ 64
           + ++G G +G+  A    + +I   I+E          A   +K+ YD            
Sbjct: 17  LTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKHIYD------------ 64

Query: 65  LPHLP-FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKAS 123
              +  FP      V     +E L      +N  P +    +V   +  +    +  + +
Sbjct: 65  ---VAGFPE-----VPAIDLVESLWAQAERYN--PDVVLNETVTKYTKLDD-GTFETRTN 113

Query: 124 NLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKP 183
                       Y  R +++A+G     F P  R L    +    TG  ++    K+ + 
Sbjct: 114 T--------GNVYRSRAVLIAAGLGA--FEP--RKLPQLGNIDHLTGSSVYYAV-KSVED 160

Query: 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRS 218
           + GK V++VG G+S ++  + L  +AA  +LV R 
Sbjct: 161 FKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRG 195

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 2e-06
 Identities = 47/314 (14%), Positives = 94/314 (29%), Gaps = 103/314 (32%)

Query: 12  MVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDR-----------LRLHLAK 60
           ++G+G + +A   CLS +      ++ +  +   W                  L   +  
Sbjct: 158 VLGSGKTWVALDVCLSYK------VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211

Query: 61  QFCQLPHLPFPSSYPMFVSRAQ-----FIEH---------LDH-----YVSHFNIGPSI- 100
            +         S+  + +   Q      ++          L +       + FN+   I 
Sbjct: 212 NWTSRSD--HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269

Query: 101 ---RYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE------TTNP 151
              R+++  +  S    T++     S  L+P  E++     ++L     +      TTNP
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTP-DEVKSLLL-KYLDCRPQDLPREVLTTNP 327

Query: 152 FTPDIRGLCSFCSSATGTGEVI--HSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHA 209
                    S         E I      + N K      +                    
Sbjct: 328 R------RLSII------AESIRDGLATWDNWKHVNCDKL-----------------TTI 358

Query: 210 AKTSLVVRSPVHVLSREMVYLGVVLFK---YVPFG-----WVD----TLMVMLSRLV--- 254
            ++SL V  P     R+M +  + +F    ++P       W D     +MV++++L    
Sbjct: 359 IESSLNVLEP--AEYRKM-FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415

Query: 255 ----YGDLSKYGIP 264
                   S   IP
Sbjct: 416 LVEKQPKESTISIP 429

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} Length = 319

 Score = 47.5 bits (114), Expect = 2e-06
 Identities = 9/34 (26%), Positives = 19/34 (55%)

Query: 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVR 217
           + GK V+ +G GNSG   A+ ++ +    +++  
Sbjct: 153 FKGKRVVTIGGGNSGAIAAISMSEYVKNVTIIEY 186

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A Length = 521

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 16/36 (44%), Positives = 23/36 (63%)

Query: 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219
           + GK V V+G GNSG+E A+DLA      +L+  +P
Sbjct: 353 FKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP 388

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 10/75 (13%)

Query: 142 VVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEI 201
           ++ASG    P TP I G+           +V+        K   G  V ++G G  G + 
Sbjct: 460 ILASG--IVPRTPPIDGI--------DHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDT 509

Query: 202 ALDLANHAAKTSLVV 216
           A+ L+     TS  +
Sbjct: 510 AMYLSQPGESTSQNI 524

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* Length = 320

 Score = 44.4 bits (106), Expect = 3e-05
 Identities = 14/34 (41%), Positives = 22/34 (64%)

Query: 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVR 217
           Y  + V V+G GN+ +E AL L+N A++  L+ R
Sbjct: 143 YRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHR 176

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} Length = 335

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVR 217
           +  +++ V+G G+S ME A  L   A   +LV R
Sbjct: 153 FRDQDIAVIGGGDSAMEEATFLTRFARSVTLVHR 186

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* Length = 333

 Score = 43.3 bits (103), Expect = 5e-05
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVR 217
           +  K + V+G G+S ME A  L  + +K  ++ R
Sbjct: 157 FRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHR 190

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* Length = 338

 Score = 43.3 bits (103), Expect = 5e-05
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVR 217
           +  K + V+G G+S  E A  L  + +K  ++VR
Sbjct: 171 FRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVR 204

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690

 Score = 43.4 bits (103), Expect = 6e-05
 Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 15/104 (14%)

Query: 142 VVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNS--GM 199
           + A+G T    T  +    +         +V+       G+   GK V+V    +   G 
Sbjct: 481 ITATGAT--WRTDGVARFHTTALPIAEGMQVLGPDDLFAGRLPDGKKVVVYDDDHYYLGG 538

Query: 200 EIALDLANHAAKTSLVVRSP-----------VHVLSREMVYLGV 232
            +A  LA    + S+V               V+ + R ++  GV
Sbjct: 539 VVAELLAQKGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGV 582

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* Length = 311

 Score = 42.9 bits (102), Expect = 7e-05
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVR 217
           Y  K V V+G G++ +E A+ LAN   K  L+ R
Sbjct: 141 YKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHR 174

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} Length = 325

 Score = 42.9 bits (102), Expect = 7e-05
 Identities = 11/34 (32%), Positives = 21/34 (61%)

Query: 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVR 217
           Y GK V+V+G G++ +E  + L   A + +++ R
Sbjct: 150 YKGKKVVVIGGGDAAVEEGMFLTKFADEVTVIHR 183

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} Length = 315

 Score = 42.9 bits (102), Expect = 8e-05
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVR 217
           Y  K V V+G G++ +E AL LAN  +K  L+ R
Sbjct: 145 YKNKEVAVLGGGDTALEEALYLANICSKIYLIHR 178

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} Length = 535

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 14/31 (45%), Positives = 23/31 (74%)

Query: 8  VEVIMVGAGTSGLATAACLSLQSIPYVILER 38
          V+V++VGAG  GL+TA  L+ Q +  +++ER
Sbjct: 6  VDVLVVGAGLGGLSTAMFLARQGVRVLVVER 36

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* Length = 323

 Score = 41.3 bits (98), Expect = 2e-04
 Identities = 11/34 (32%), Positives = 21/34 (61%)

Query: 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVR 217
           +  + V V+G G+S +E A  L++++ K  L+ R
Sbjct: 152 FKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHR 185

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} Length = 570

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 8  VEVIMVGAGTSGLATAACLSLQSIPYVILER 38
           +V++VG G  GL  A  L    +  ++LE+
Sbjct: 50 TDVVVVGGGPVGLMLAGELRAGGVGALVLEK 80

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* Length = 549

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 8/31 (25%), Positives = 21/31 (67%)

Query: 8  VEVIMVGAGTSGLATAACLSLQSIPYVILER 38
           +V+++G G  G+A A  L+ + + ++++E+
Sbjct: 27 TDVLILGGGPVGMALALDLAHRQVGHLVVEQ 57

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} Length = 500

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 4  QAAGVEVIMVGAGTSGLATAACLSLQSIPYVILER 38
            +   VI+VGAG +G+  A  L L  +  V+LER
Sbjct: 8  HRSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLER 42

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} Length = 499

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 8  VEVIMVGAGTSGLATAACLSLQSIPYVILER 38
            VI+VGAG +GL  A  L L  +  ++LE+
Sbjct: 13 ASVIVVGAGPAGLMLAGELRLGGVDVMVLEQ 43

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	325
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	100.0
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	100.0
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	100.0
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	100.0
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	100.0
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	100.0
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	100.0
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	99.97
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	99.94
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	99.94
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.93
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.93
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.93
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.93
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	99.93
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	99.93
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.92
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	99.92
3r9u_A	315	Thioredoxin reductase; structural genomics, center	99.92
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	99.92
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	99.92
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	99.91
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	99.91
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	99.91
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	99.91
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	99.9
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.9
4fk1_A	304	Putative thioredoxin reductase; structural genomic	99.9
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	99.87
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	99.87
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	99.87
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	99.87
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	99.87
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	99.86
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	99.86
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	99.86
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	99.86
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	99.86
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	99.86
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	99.85
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	99.85
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	99.85
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	99.85
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	99.85
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	99.85
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	99.85
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	99.85
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	99.84
1ojt_A	482	Surface protein; redox-active center, glycolysis,	99.84
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	99.84
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	99.84
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	99.84
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	99.84
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	99.84
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	99.84
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	99.83
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.83
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	99.83
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	99.83
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	99.83
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	99.83
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	99.83
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	99.83
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	99.83
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	99.83
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	99.82
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	99.82
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.82
1fec_A	490	Trypanothione reductase; redox-active center, oxid	99.82
4dna_A	463	Probable glutathione reductase; structural genomic	99.82
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	99.81
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	99.81
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	99.81
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	99.81
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	99.81
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	99.81
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	99.8
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	99.79
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	99.79
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	99.77
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	99.77
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	99.77
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	99.76
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	99.76
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	99.76
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	99.74
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	99.74
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	99.73
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	99.7
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	99.64
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.57
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.55
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.43
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	99.43
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	99.41
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	99.4
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	99.38
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.37
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	99.36
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	99.36
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.35
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	99.35
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	99.34
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.34
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.34
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	99.33
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.32
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	99.3
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	99.3
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	99.3
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	99.3
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	99.29
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.29
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	99.28
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	99.27
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	99.24
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.24
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.23
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	99.23
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.21
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.19
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	99.19
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	99.19
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.19
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	99.19
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	99.19
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.18
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	99.18
3atr_A	453	Conserved archaeal protein; saturating double bond	99.18
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.17
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	99.17
4hb9_A	412	Similarities with probable monooxygenase; flavin,	99.17
3dme_A	369	Conserved exported protein; structural genomics, P	99.16
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	99.16
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.12
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	99.11
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.1
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.1
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.08
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.08
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	99.07
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.06
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	99.06
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	99.04
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.04
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	99.03
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.02
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.0
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.0
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.0
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	98.99
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	98.98
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.98
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	98.97
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	98.97
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.94
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.94
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.93
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	98.88
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	98.88
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.84
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	98.82
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	98.82
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.82
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	98.81
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	98.81
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	98.81
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	98.77
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	98.75
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	98.72
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	98.72
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	98.71
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.7
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.7
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.69
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.69
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	98.68
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	98.68
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	98.67
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.66
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.66
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	98.66
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.66
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.66
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.62
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.61
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.6
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.6
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	98.6
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.59
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.57
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.55
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	98.54
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.54
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.53
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	98.52
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.52
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	98.52
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.52
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	98.51
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.51
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.5
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.5
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.5
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.5
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.49
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.49
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.49
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.48
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.48
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.48
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.48
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.47
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.47
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.46
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.46
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.46
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.45
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.45
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	98.45
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	98.44
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	98.44
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.43
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.43
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.42
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.41
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.41
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	98.4
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.39
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.37
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	98.36
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	98.35
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.35
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.35
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	98.35
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	98.32
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	98.31
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.31
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.31
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	98.29
4dna_A	463	Probable glutathione reductase; structural genomic	98.24
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.24
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.21
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.21
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.19
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.19
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.18
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.17
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	98.16
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.14
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.14
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.13
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.13
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	98.12
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	98.12
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.11
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	98.11
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.1
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.09
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	98.09
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.08
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	98.08
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.05
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.03
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	97.93
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.93
3r9u_A	315	Thioredoxin reductase; structural genomics, center	97.91
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	97.86
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	97.86
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	97.86
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	97.8
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	97.79
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	97.71
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	97.69
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	97.63
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.63
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	97.55
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	97.53
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	97.53
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	97.51
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.47
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.47
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.41
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	97.41
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	97.39
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.37
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.33
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	97.31
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	97.29
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	97.29
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.24
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.18
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	97.17
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.14
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	97.14
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.07
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	96.99
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	96.97
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	96.88
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	96.84
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	96.72
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	96.62
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.57
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.48
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	96.47
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.37
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	96.36
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	96.28
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.24
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	95.96
3c85_A	183	Putative glutathione-regulated potassium-efflux S	95.91
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	95.9
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	95.87
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	95.77
4fk1_A	304	Putative thioredoxin reductase; structural genomic	95.77
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	95.71
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	95.5
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	95.47
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	95.46
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	95.42
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	95.38
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	95.31
2cul_A	232	Glucose-inhibited division protein A-related PROT	95.3
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	95.29
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	95.27
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	95.24
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	95.24
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	95.22
3qha_A	296	Putative oxidoreductase; seattle structural genomi	95.16
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	95.15
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	95.14
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	95.11
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	95.1
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	95.06
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	95.02
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	95.02
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	94.97
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	94.93
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	94.91
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	94.89
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	94.84
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	94.82
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	94.79
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	94.78
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	94.77
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	94.74
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	94.72
4hb9_A	412	Similarities with probable monooxygenase; flavin,	94.68
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	94.67
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	94.66
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	94.63
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	94.63
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	94.61
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	94.57
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	94.54
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	94.53
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	94.52
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	94.51
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	94.49
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	94.49
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	94.49
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	94.49
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	94.48
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	94.44
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	94.43
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	94.43
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	94.4
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	94.37
2bry_A	497	NEDD9 interacting protein with calponin homology a	94.34
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	94.33
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	94.31
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	94.27
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	94.27
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	94.26
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	94.25
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	94.21
4g65_A	461	TRK system potassium uptake protein TRKA; structur	94.2
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	94.13
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	94.13
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	94.1
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	94.09
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	94.04
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	94.03
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	93.97
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	93.94
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	93.92
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	93.9
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	93.88
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	93.87
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	93.85
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	93.85
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	93.85
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	93.84
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	93.83
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	93.79
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	93.77
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	93.74
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	93.72
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	93.66
3tl2_A	315	Malate dehydrogenase; center for structural genomi	93.65
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	93.63
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	93.61
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	93.57
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	93.57
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	93.56
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	93.55
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	93.53
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	93.51
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	93.5
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	93.49
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	93.47
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	93.47
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	93.45
3dme_A	369	Conserved exported protein; structural genomics, P	93.44
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	93.43
4ezb_A	317	Uncharacterized conserved protein; structural geno	93.42
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	93.42
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	93.41
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	93.38
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	93.37
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	93.35
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	93.3
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	93.3
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	93.29
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	93.29
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	93.29
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	93.28
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	93.25
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	93.24
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	93.2
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	93.19
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	93.19
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	93.19
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	93.12
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	93.12
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	93.11
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	93.11
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	93.1
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	93.09
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	93.08
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	93.07
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	93.07
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	93.05
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	93.03
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	93.02
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	93.0
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	92.98
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	92.98
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	92.98
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	92.95
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	92.94
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	92.93
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	92.93
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	92.92
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	92.92
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	92.9
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	92.9
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	92.88
1id1_A	153	Putative potassium channel protein; RCK domain, E.	92.87
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	92.86
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	92.84
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	92.79
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	92.78
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	92.77
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	92.76
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	92.75
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	92.74
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	92.74
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	92.71
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	92.65
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	92.63
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	92.62
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	92.62
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	92.62
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	92.6
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	92.6
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	92.59
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	92.58
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	92.58
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	92.57
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	92.56
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	92.5
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	92.46
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	92.46
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	92.45
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	92.45
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	92.42
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	92.41
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	92.4
3atr_A	453	Conserved archaeal protein; saturating double bond	92.39
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	92.38
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	92.36
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	92.36
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	92.35
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	92.28
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	92.27
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	92.27
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	92.26
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	92.25
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	92.24

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=100.00  E-value=1.7e-42  Score=329.48  Aligned_cols=295  Identities=19%  Similarity=0.318  Sum_probs=237.3

Q ss_pred             CCeEEEECCChHHHHHHHHHH-hcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCC----CCCCCCCCCCHH
Q 020533            7 GVEVIMVGAGTSGLATAACLS-LQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLP----FPSSYPMFVSRA   81 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~-~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~   81 (325)
                      .+||+|||||++|+++|..|+ +.|++|+|||+++.+||+|..+.|++++++.+...+.++..+    .+.+...++++.
T Consensus         8 ~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~   87 (540)
T 3gwf_A            8 TVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQP   87 (540)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCHH
Confidence            479999999999999999999 899999999999999999999999999999998888776431    123445678899


Q ss_pred             HHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccc
Q 020533           82 QFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCS  161 (325)
Q Consensus        82 ~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~  161 (325)
                      ++.+|+.+.++++++..+++++++|+++++++..+.|+|++.++       .+ +.||+||+|||.++.|..|++||++.
T Consensus        88 ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G-------~~-i~ad~lV~AtG~~s~p~~p~ipG~~~  159 (540)
T 3gwf_A           88 EILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHG-------EV-YRAKYVVNAVGLLSAINFPNLPGLDT  159 (540)
T ss_dssp             HHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTS-------CE-EEEEEEEECCCSCCSBCCCCCTTGGG
T ss_pred             HHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCC-------CE-EEeCEEEECCcccccCCCCCCCCccc
Confidence            99999999999999877789999999999988667999998764       56 89999999999999999999999999


Q ss_pred             cccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHHHHH----HHHhh
Q 020533          162 FCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGV----VLFKY  237 (325)
Q Consensus       162 ~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~~~~----~~~~~  237 (325)
                      |      .|..+|+..+.+..++.+|+|+|||+|.+|+|+|..|++.+.+||+++|++.|++|+.+..++.    .+.+.
T Consensus       160 f------~g~~~~~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~  233 (540)
T 3gwf_A          160 F------EGETIHTAAWPEGKSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNRPVNPEQIAEIKAD  233 (540)
T ss_dssp             C------CSEEEEGGGCCSSCCCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCCCEEECCCCBCCHHHHHHHHHT
T ss_pred             c------CCCEEEeecCCCccccccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCccCCCCHHHHHHHHhc
Confidence            9      9999999999988889999999999999999999999999999999999999999986542211    11111


Q ss_pred             CCHHHH--------------------------HHH----------------------------------HHHHHHHHhcC
Q 020533          238 VPFGWV--------------------------DTL----------------------------------MVMLSRLVYGD  257 (325)
Q Consensus       238 ~p~~~~--------------------------~~~----------------------------------~~~~~~~~~~~  257 (325)
                      +|....                          ...                                  .....+..+.+
T Consensus       234 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d  313 (540)
T 3gwf_A          234 YDRIWERAKNSAVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGDIATDEAANEAAASFIRAKVAEIIED  313 (540)
T ss_dssp             HHHHHHHHHTSSSCSSSCCCCCCGGGSCHHHHHHHHHHHHHHCCHHHHHHTSCSCTTTCHHHHHHHHHHHHHHHHHHCCS
T ss_pred             cHHHHHHHHhccccccccccchhhhhCCHHHHHHHHHHHHhcccchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHcCC
Confidence            111100                          000                                  00000111111


Q ss_pred             ccccCCCCCCCCchhhhhccCceeeeChhhhhhhhCCceEEe---cC-CeeeecCceEEeeecceecCCC
Q 020533          258 LSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQSE---QQ-NSQIGAQTRTELLLKTWLGTDT  323 (325)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~~~---~~-i~~~~~~~~v~~~dg~~~~~d~  323 (325)
                      ........|+       ...|++++++++|++++++++|+++   .. |++|+++| |.++||+.+++|.
T Consensus       314 p~~~~~l~P~-------~~g~kR~~~~~~y~~~l~~~nV~lv~~~~~~I~~it~~g-v~~~dG~~~~~Dv  375 (540)
T 3gwf_A          314 PETARKLMPK-------GLFAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVTAKG-VVTEDGVLHELDV  375 (540)
T ss_dssp             HHHHHHHCCC-------SCCCSSCEEESSTGGGGGSTTEEEEETTTSCEEEECSSE-EEETTCCEEECSE
T ss_pred             HHHHHhCCCC-------CCCccccCCCccHHHHhcCCCEEEEeCCCCCccEEecCe-EEcCCCCEEECCE
Confidence            1100111122       3468999999999999999999999   55 99999987 7799999999984

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=100.00  E-value=4.1e-42  Score=327.35  Aligned_cols=300  Identities=22%  Similarity=0.299  Sum_probs=235.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCC----CCCCCCCCCCHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLP----FPSSYPMFVSRAQ   82 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~   82 (325)
                      .+||+|||||++|+++|..|++.|++|+|||+++.+||+|..+.|++++++++...+.++..+    .+.+...++++.+
T Consensus        21 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~~e  100 (549)
T 4ap3_A           21 SYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQPE  100 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBHHH
T ss_pred             CCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCHHH
Confidence            469999999999999999999999999999999999999999999999999999888877542    2345567889999


Q ss_pred             HHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCcccc
Q 020533           83 FIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSF  162 (325)
Q Consensus        83 ~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~  162 (325)
                      +.+|+.+.++++++..+++++++|+++++++..+.|+|++.++       .+ +.||+||+|||.++.|..|++||++.|
T Consensus       101 i~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G-------~~-i~ad~lV~AtG~~s~p~~p~ipG~~~f  172 (549)
T 4ap3_A          101 ILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRG-------DE-VSARFLVVAAGPLSNANTPAFDGLDRF  172 (549)
T ss_dssp             HHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTC-------CE-EEEEEEEECCCSEEECCCCCCTTGGGC
T ss_pred             HHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCC-------CE-EEeCEEEECcCCCCCCCCCCCCCcccC
Confidence            9999999999999877889999999999988777999998764       56 899999999998889999999999999


Q ss_pred             ccCCCCCccEEecCCCC-CCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHHHHHHHH----hh
Q 020533          163 CSSATGTGEVIHSTQYK-NGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLF----KY  237 (325)
Q Consensus       163 ~~~~~~~g~~~~~~~~~-~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~~~~~~~----~~  237 (325)
                            .|..+|+..|. +..++.+|+|+|||+|.+|+|+|..|++.+.+||+++|++.|++|+.+..+.....    +.
T Consensus       173 ------~g~~~~~~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~ilp~~~~~~~~~~~~~l~~~  246 (549)
T 4ap3_A          173 ------TGDIVHTARWPHDGVDFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANYSIPAGNVPLDDATRAEQKAN  246 (549)
T ss_dssp             ------CSEEEEGGGCCTTCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECC----CHHHHHHHHHT
T ss_pred             ------CCceEEeccccccccccCCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCcCCCCCHHHHHHHHhc
Confidence                  99999999998 57788999999999999999999999999999999999999999987653322111    11


Q ss_pred             CCHHHHH--------------------------HHHHH-------------------------HHHHHhcCccccCCCCC
Q 020533          238 VPFGWVD--------------------------TLMVM-------------------------LSRLVYGDLSKYGIPKP  266 (325)
Q Consensus       238 ~p~~~~~--------------------------~~~~~-------------------------~~~~~~~~~~~~~~~~~  266 (325)
                      +|.....                          .+++.                         ....+...+ +..+..|
T Consensus       247 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~d~  325 (549)
T 4ap3_A          247 YAERRRLSRESGGGSPHRPHPKSALEVSEEERRAVYEERWKLGGVLFSKAFPDQLTDPAANDTARAFWEEKI-RAVVDDP  325 (549)
T ss_dssp             HHHHHHHHHHSSSSSSCCCCSSCTTSSCHHHHHHHHHHHHHHCHHHHTTSSTTTTTCHHHHHHHHHHHHHHH-HHHCSCH
T ss_pred             cHHHHHHHHhhccccccccCccchhcCCHHHHHHHHHHHHhhcchHHHhhhhhhhcCHHHHHHHHHHHHHHH-HHHcCCH
Confidence            1111100                          00000                         000000000 0000011


Q ss_pred             CCCchhh---hhccCceeeeChhhhhhhhCCceEEe---cC-CeeeecCceEEeeecceecCCC
Q 020533          267 REGPFFM---KAAYGKYPVIDAGTCEKIKSGQIQSE---QQ-NSQIGAQTRTELLLKTWLGTDT  323 (325)
Q Consensus       267 ~~~~~~~---~~~~~~~~~~~~~~~~~l~~g~v~~~---~~-i~~~~~~~~v~~~dg~~~~~d~  323 (325)
                      +....+.   -...|+++++++++++++++++|+++   .. |++++++| |.++|| .+++|+
T Consensus       326 ~~~~~l~P~~~~~~~kR~~~~~~y~~al~~~~V~lvd~~~~~I~~it~~g-v~~~dG-~~~~D~  387 (549)
T 4ap3_A          326 AVAELLTPKDHAIGAKRIVLDSGYYETYNRDNVELVDLRSTPIVGMDETG-IVTTGA-HYDLDM  387 (549)
T ss_dssp             HHHHHHSCSSCCBTTBCCEEESSTGGGGGSTTEEEEETTTSCEEEEETTE-EEESSC-EEECSE
T ss_pred             HHHHhCCCCCCCCCccccCCCccHHHHhcCCCEEEEeCCCCCceEEeCCc-EEeCCC-ceecCE
Confidence            1100011   13458999999999999999999999   66 99999987 678999 899984

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=100.00  E-value=7.2e-42  Score=325.43  Aligned_cols=297  Identities=20%  Similarity=0.251  Sum_probs=232.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCC----CCCCCCCCCHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPF----PSSYPMFVSRA   81 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~   81 (325)
                      ..+||+|||||++|+++|..|++.|++++|||+++.+||+|..++|++++++.+...+.+++.+.    ..+...++++.
T Consensus         8 ~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~~   87 (545)
T 3uox_A            8 PALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQP   87 (545)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBHH
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCHH
Confidence            35799999999999999999999999999999999999999999999999999887777654332    24445788999


Q ss_pred             HHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccc
Q 020533           82 QFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCS  161 (325)
Q Consensus        82 ~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~  161 (325)
                      ++.+|+.+.++++++..+++++++|+++++++..+.|.|++.++       .+ +.||+||+|+|.++.|..|++||++.
T Consensus        88 ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G-------~~-~~ad~lV~AtG~~s~p~~p~ipG~~~  159 (545)
T 3uox_A           88 EMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNE-------EV-VTCRFLISATGPLSASRMPDIKGIDS  159 (545)
T ss_dssp             HHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTT-------EE-EEEEEEEECCCSCBC---CCCTTGGG
T ss_pred             HHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCC-------CE-EEeCEEEECcCCCCCCcCCCCCCccc
Confidence            99999999999999977889999999999987778999998764       67 89999999999989999999999999


Q ss_pred             cccCCCCCccEEecCCCCCC-------CCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHHHH---
Q 020533          162 FCSSATGTGEVIHSTQYKNG-------KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLG---  231 (325)
Q Consensus       162 ~~~~~~~~g~~~~~~~~~~~-------~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~~~---  231 (325)
                      |      .|..+|+..|...       .++.+|+|+|||+|.+|+|+|..|++.+.+||+++|++.|++|+.+.++.   
T Consensus       160 f------~g~~~h~~~~~~~~~~~~~~~~~~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~i~p~~~~~~~~~~  233 (545)
T 3uox_A          160 F------KGESFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNWCTPLGNSPMSKEK  233 (545)
T ss_dssp             C------CSEEEEGGGCCBCTTSCBSCCCCBTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCCCEECCCCBCCHHH
T ss_pred             c------CCCeEEcccccccccccccccccCCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCccccCCcCCCCHHH
Confidence            9      9999999999886       77889999999999999999999999999999999999999997654211   


Q ss_pred             -HHHHhhCCHHH--------------------------HHHHHH---------------------------------HHH
Q 020533          232 -VVLFKYVPFGW--------------------------VDTLMV---------------------------------MLS  251 (325)
Q Consensus       232 -~~~~~~~p~~~--------------------------~~~~~~---------------------------------~~~  251 (325)
                       ..+.+.+|...                          ...++.                                 ...
T Consensus       234 ~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (545)
T 3uox_A          234 MDSLRNRYPTILEYVKSTDTAFPYHRDPRKGTDVSESERDAFFEELYRQPGYGIWLSGFRDLLLNKESNKFLADFVAKKI  313 (545)
T ss_dssp             HHHHHHTHHHHHHHHTTSSSSSSCCCBSSCGGGSCHHHHHHHHHHHHHSSSTHHHHTSBTTTTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHhhcccccccccccchhhhCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhcCHHHHHHHHHHHHHHH
Confidence             11111111110                          000000                                 000


Q ss_pred             HHHhcCccccCCCCCCCCchhhhhccCceeeeChhhhhhhhCCceEEe---cC-CeeeecCceEEeeecceecCCC
Q 020533          252 RLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQSE---QQ-NSQIGAQTRTELLLKTWLGTDT  323 (325)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~~~---~~-i~~~~~~~~v~~~dg~~~~~d~  323 (325)
                      +..+.+..-.....|.     .-...|+++.+++++++++++++|+++   .. |++++++| |.+.|| .+++|+
T Consensus       314 ~~~v~d~~~~~~l~P~-----~~~~g~kR~~~~~~y~~al~~~nV~lv~~~~~~I~~it~~g-v~~~dG-~~~~D~  382 (545)
T 3uox_A          314 RQRVKDPVVAEKLIPK-----DHPFGAKRVPMETNYYETYNRDNVHLVDIREAPIQEVTPEG-IKTADA-AYDLDV  382 (545)
T ss_dssp             HHHCSCHHHHHHTSCS-----SSCTTSSCCCEESSHHHHTTSTTEEEEETTTSCEEEEETTE-EEESSC-EEECSE
T ss_pred             HHHcCCHHHHHhCCCC-----CCCCCCCccCCCccHHHHhcCCCEEEEecCCCCceEEccCe-EEeCCC-eeecCE
Confidence            0011110000001120     013458999999999999999999999   55 99999987 678999 899984

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=100.00  E-value=1.5e-40  Score=317.29  Aligned_cols=297  Identities=20%  Similarity=0.265  Sum_probs=231.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCC----CCCCCCCCCHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPF----PSSYPMFVSRA   81 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~   81 (325)
                      ..+||+|||||++|+++|..|++.|++++|||+++.+||+|..++|++++++.+...+.+++.+.    ..+...++++.
T Consensus        15 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~   94 (542)
T 1w4x_A           15 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQP   94 (542)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHH
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCCHH
Confidence            35799999999999999999999999999999999999999999999999998887777664331    12334688999


Q ss_pred             HHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccc
Q 020533           82 QFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCS  161 (325)
Q Consensus        82 ~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~  161 (325)
                      ++.+|+..+++++++..+++++++|++++++++.+.|+|++.++       .+ +.||+||+|+|.++.|..|++||++.
T Consensus        95 ~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G-------~~-~~ad~vV~AtG~~s~p~~p~i~G~~~  166 (542)
T 1w4x_A           95 EILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHG-------DR-IRARYLIMASGQLSVPQLPNFPGLKD  166 (542)
T ss_dssp             HHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTC-------CE-EEEEEEEECCCSCCCCCCCCCTTGGG
T ss_pred             HHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCC-------CE-EEeCEEEECcCCCCCCCCCCCCCccc
Confidence            99999999999999888889999999999987667899988754       46 89999999999999999999999999


Q ss_pred             cccCCCCCccEEecCCCC-CCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhH----HHHHHHHh
Q 020533          162 FCSSATGTGEVIHSTQYK-NGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV----YLGVVLFK  236 (325)
Q Consensus       162 ~~~~~~~~g~~~~~~~~~-~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~----~~~~~~~~  236 (325)
                      |      .|.++|+..|. +..++.+|+|+|||+|.+|+|++..++..+.+|+++.|++.|++|+...    .....+.+
T Consensus       167 f------~G~~~hs~~~~~~~~~~~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~~~p~~~~~~~~~~~~~~~~  240 (542)
T 1w4x_A          167 F------AGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPARNAPLDPEFLADLKK  240 (542)
T ss_dssp             C------CSEEEEGGGCCSSCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECCCCBCCHHHHHHHHT
T ss_pred             C------CCceEECCCCCCchhccCCCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCcccccCCCCCCCHHHHHHHHh
Confidence            9      99999999998 4467889999999999999999999999999999999999998886542    11111111


Q ss_pred             hCCHH--------------------------HHHHHHHH--------------------------------HHHHHhcCc
Q 020533          237 YVPFG--------------------------WVDTLMVM--------------------------------LSRLVYGDL  258 (325)
Q Consensus       237 ~~p~~--------------------------~~~~~~~~--------------------------------~~~~~~~~~  258 (325)
                      .+|..                          ....++..                                ..+..+.+.
T Consensus       241 ~~p~l~~~~~~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (542)
T 1w4x_A          241 RYAEFREESRNTPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDILRDRDANERVAEFIRNKIRNTVRDP  320 (542)
T ss_dssp             THHHHHHHHHTSSSSSCCCCCCSCTTTSCHHHHHHHHHHHHHHCSGGGGGSSTTTTTCHHHHHHHHHHHHHHHHHHCSSH
T ss_pred             hCHHHHHHHHhhccccccCccccchhcCCHHHHHHHHHHHHhhcchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHcCCH
Confidence            11110                          00000000                                000000110


Q ss_pred             cccCCCCCCCCchhhhhccCceeeeChhhhhhhhCCceEEe---cC-CeeeecCceEEeeecceecCCC
Q 020533          259 SKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQSE---QQ-NSQIGAQTRTELLLKTWLGTDT  323 (325)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~~~---~~-i~~~~~~~~v~~~dg~~~~~d~  323 (325)
                      .-.....|.     .-.+.|++++++++|++++++++|+++   .. |++|++++ |.++| +.+++|+
T Consensus       321 ~~~~~l~P~-----~~~~~~kr~~~~~~y~~~~~~~~v~lv~~~~~~i~~i~~~g-v~~~d-~~~~~D~  382 (542)
T 1w4x_A          321 EVAERLVPK-----GYPFGTKRLILEIDYYEMFNRDNVHLVDTLSAPIETITPRG-VRTSE-REYELDS  382 (542)
T ss_dssp             HHHHHHSCC-----SSCSSSSCCEEESSHHHHTTSTTEEEEETTTSCEEEECSSE-EEESS-CEEECSE
T ss_pred             HHHHhcCCC-----CCCccccCCCCCccHHHHhCCCCEEEEecCCCCceEEcCCe-EEeCC-eEEecCE
Confidence            000011121     013468999999999999999999998   55 99999986 67889 8899985

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=100.00  E-value=4.6e-35  Score=274.17  Aligned_cols=203  Identities=19%  Similarity=0.382  Sum_probs=176.2

Q ss_pred             CeEEEECCChHHHHHHHHHHh---cCCC---eEEEecCCCCCCccCCC---------------CCCceEeecCCCccCCC
Q 020533            8 VEVIMVGAGTSGLATAACLSL---QSIP---YVILERENCYASIWKKY---------------SYDRLRLHLAKQFCQLP   66 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~---~g~~---v~v~e~~~~~Gg~w~~~---------------~y~~~~~~~~~~~~~~~   66 (325)
                      +||+|||||++||++|..|++   .|++   |+|||+++.+||+|...               .|+.++.+.++..+.++
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~   82 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA   82 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence            699999999999999999999   9999   99999999999999863               35556666666666676


Q ss_pred             CCCCCCC----CCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEE
Q 020533           67 HLPFPSS----YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLV  142 (325)
Q Consensus        67 ~~~~~~~----~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vI  142 (325)
                      .++++..    .+.++++.++.+|+.++++++++..+++++++|++++..+..+.|+|++.+...+  +..+ +.||+||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g--~~~~-~~~d~VV  159 (464)
T 2xve_A           83 DYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTD--TIYS-EEFDYVV  159 (464)
T ss_dssp             TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTT--EEEE-EEESEEE
T ss_pred             CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCC--ceEE-EEcCEEE
Confidence            6665432    2678899999999999999999886679999999999876556899998774322  3356 8999999


Q ss_pred             EcccCCCCCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          143 VASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       143 iAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      +|||+++.|+.|.+||++.|      .|.++|+..+.+...+.+|+|+|||+|++|+|+|..|++.|.+|+++.|++
T Consensus       160 vAtG~~s~p~~p~ipG~~~~------~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~  230 (464)
T 2xve_A          160 CCTGHFSTPYVPEFEGFEKF------GGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRT  230 (464)
T ss_dssp             ECCCSSSSBCCCCCBTTTTC------CSEEEEGGGCCCGGGGTTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSS
T ss_pred             ECCCCCCCCccCCCCCcccC------CceEEehhhhCCHhHcCCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECC
Confidence            99999999999999999999      899999999988777889999999999999999999999999999999987

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=100.00  E-value=2.5e-33  Score=261.57  Aligned_cols=205  Identities=21%  Similarity=0.321  Sum_probs=168.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC--CeEEEecCCCCCCccCCCCC---------------------------------
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI--PYVILERENCYASIWKKYSY---------------------------------   51 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~--~v~v~e~~~~~Gg~w~~~~y---------------------------------   51 (325)
                      .+||+|||||++||++|..|++.|.  +|+|||+++.+||.|.....                                 
T Consensus         6 ~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~~~   85 (447)
T 2gv8_A            6 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLY   85 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCCC
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCchh
Confidence            5799999999999999999999999  99999999999999986432                                 


Q ss_pred             CceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCce
Q 020533           52 DRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE  131 (325)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~  131 (325)
                      ..+..+.+...+.++.++++.+.+.++++.++.+|+.+++++++  .+++++++|++++..+  +.|.|++.+..++  +
T Consensus        86 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--~~i~~~t~V~~v~~~~--~~~~V~~~~~~~G--~  159 (447)
T 2gv8_A           86 RDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLL--PFIKLATDVLDIEKKD--GSWVVTYKGTKAG--S  159 (447)
T ss_dssp             TTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGG--GGEECSEEEEEEEEET--TEEEEEEEESSTT--C
T ss_pred             hhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhh--CeEEeCCEEEEEEeCC--CeEEEEEeecCCC--C
Confidence            22233333344456667777777788999999999999999885  4569999999998764  6799998763222  1


Q ss_pred             -eEEEEEeCeEEEcccCCCCCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccC
Q 020533          132 -IEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAA  210 (325)
Q Consensus       132 -~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~  210 (325)
                       ..+ +.||+||+|||+++.|++|.+||++.|.  ....|.++|+..+.+...+++++|+|||+|++|+|+|..|++.+.
T Consensus       160 ~~~~-~~~d~VVvAtG~~s~p~~p~i~G~~~~~--~~~~g~v~~~~~~~~~~~~~~k~VvVvG~G~sg~e~A~~l~~~~~  236 (447)
T 2gv8_A          160 PISK-DIFDAVSICNGHYEVPYIPNIKGLDEYA--KAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAK  236 (447)
T ss_dssp             CEEE-EEESEEEECCCSSSSBCBCCCBTHHHHH--HHSTTSEEEGGGCCCGGGGTTCCEEEECSSHHHHHHHHHHTTTSC
T ss_pred             eeEE-EEeCEEEECCCCCCCCCCCCCCChhhhh--ccCCccEEEecccCChhhcCCCEEEEEccCcCHHHHHHHHHHHhC
Confidence             247 8999999999998899999999987530  000467999999988777889999999999999999999999999


Q ss_pred             e-EEEEEecCC
Q 020533          211 K-TSLVVRSPV  220 (325)
Q Consensus       211 ~-v~~~~r~~~  220 (325)
                      + |+++.|++.
T Consensus       237 ~~V~l~~r~~~  247 (447)
T 2gv8_A          237 HPIYQSLLGGG  247 (447)
T ss_dssp             SSEEEECTTCC
T ss_pred             CcEEEEeCCCC
Confidence            9 999999883

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=100.00  E-value=6.9e-33  Score=250.34  Aligned_cols=273  Identities=22%  Similarity=0.365  Sum_probs=216.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ++||+|||||++|+++|..|+++|++|+|||+++.+||.|.. .|+.+.+..+...+.++.++.+.+...++++.++.+|
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQH-AWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAY   81 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGG-SCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccC-CCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHH
Confidence            379999999999999999999999999999999999999985 5888888888888888888888777888999999999


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEE-EEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWN-VKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~-v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~  165 (325)
                      +.++++++++..  +++++|++++.++  +.|. |++.+        .+ +.||+||+|||.++.|..|.+||.+.+   
T Consensus        82 l~~~~~~~~~~~--~~~~~v~~i~~~~--~~~~~v~~~~--------g~-~~~d~vV~AtG~~~~~~~~~~~g~~~~---  145 (357)
T 4a9w_A           82 LAQYEQKYALPV--LRPIRVQRVSHFG--ERLRVVARDG--------RQ-WLARAVISATGTWGEAYTPEYQGLESF---  145 (357)
T ss_dssp             HHHHHHHTTCCE--ECSCCEEEEEEET--TEEEEEETTS--------CE-EEEEEEEECCCSGGGBCCCCCTTGGGC---
T ss_pred             HHHHHHHcCCEE--EcCCEEEEEEECC--CcEEEEEeCC--------CE-EEeCEEEECCCCCCCCCCCCCCCcccc---
Confidence            999999999774  9999999998875  6788 77654        36 899999999998888999999999998   


Q ss_pred             CCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHHHHHHHHhhCCHHHHHH
Q 020533          166 ATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDT  245 (325)
Q Consensus       166 ~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~~~~~~~~~~p~~~~~~  245 (325)
                         .+..+|+..+.+...+++++|+|||+|.+|+|+|..|++.+ +|+++.|++.+++|......  .+..++...+.+ 
T Consensus       146 ---~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~-  218 (357)
T 4a9w_A          146 ---AGIQLHSAHYSTPAPFAGMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHEPAFLADDVDGR--VLFERATERWKA-  218 (357)
T ss_dssp             ---CSEEEEGGGCCCSGGGTTSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSCCCBCCTTCCTH--HHHTC--------
T ss_pred             ---CCcEEEeccCCChhhcCCCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCCCeecchhhcCc--cHHHHHHHHHhc-
Confidence               89999999998888889999999999999999999999998 69999999768888764311  111111111000 


Q ss_pred             HHHHHHHHHhcCccccCCCCCCCCchhhhhccCceeeeChhhhhhhhCCceEEecCCeeeecCceEEeeecceecCCC
Q 020533          246 LMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQSEQQNSQIGAQTRTELLLKTWLGTDT  323 (325)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~~~~~i~~~~~~~~v~~~dg~~~~~d~  323 (325)
                                  .....+....       ......+.+.......+..|.+.....++++++++ +.+.||+++++|+
T Consensus       219 ------------~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~g~i~~~~~v~~~~~~~-v~~~~g~~i~~D~  276 (357)
T 4a9w_A          219 ------------QQEGREPDLP-------PGGFGDIVMVPPVLDARARGVLAAVPPPARFSPTG-MQWADGTERAFDA  276 (357)
T ss_dssp             ----------------------------------CBCCCHHHHHHHHTTCCCEECCCSEEETTE-EECTTSCEEECSE
T ss_pred             ------------cccccCCCcc-------cccccCcccChhHHHHHhcCceEEecCcceEeCCe-eEECCCCEecCCE
Confidence                        0000000000       00112345667778888889888887899999875 8899999999984

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=99.97  E-value=1.1e-30  Score=246.60  Aligned_cols=201  Identities=22%  Similarity=0.339  Sum_probs=156.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC--------------CeEEEecCCCCCCccCCC-CCCceEeecC--CCccCCCC--
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI--------------PYVILERENCYASIWKKY-SYDRLRLHLA--KQFCQLPH--   67 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~--------------~v~v~e~~~~~Gg~w~~~-~y~~~~~~~~--~~~~~~~~--   67 (325)
                      -+||+|||+||+||++|+.|.+.|.              ..+.+|+.+.++  |..+ .|++.+++++  +.+..+.+  
T Consensus        39 i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~--Wh~g~~~p~~~~q~~fl~Dlvtl~~P~  116 (501)
T 4b63_A           39 LHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFA--WHSGMLVPGSKMQISFIKDLATLRDPR  116 (501)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCC--SSGGGCCTTCBCSSCGGGSSSTTTCTT
T ss_pred             cCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCC--cCCCCCCCCccccccchhhhccccCCC
Confidence            3799999999999999999987543              467788887776  7654 3788887765  22222111  


Q ss_pred             C---------------CCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCC------CcEEEEEeecC
Q 020533           68 L---------------PFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEAT------NMWNVKASNLL  126 (325)
Q Consensus        68 ~---------------~~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~------~~~~v~~~~~~  126 (325)
                      .               +++.+...|+++.++.+||+++|++++  .+++|+++|+++++.+.+      +.|+|++.++.
T Consensus       117 s~~sf~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~~--~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~  194 (501)
T 4b63_A          117 SSFTFLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFS--DVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVE  194 (501)
T ss_dssp             CTTSHHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTTG--GGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETT
T ss_pred             CccchHHHHHHhCCccCCccccCCCCCHHHHHHHHHHHHHHcC--CceEcceEEEeeccccccccccccceEEEEEecCC
Confidence            1               122334578999999999999999987  456999999999987643      35999999876


Q ss_pred             CCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccCCCCCccEEecCCCCC------CCCCCCCeEEEECcCCCHHH
Q 020533          127 SPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKN------GKPYGGKNVLVVGSGNSGME  200 (325)
Q Consensus       127 ~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~------~~~~~~~~v~VvG~G~s~~e  200 (325)
                      ++  +..+ +.|+.||+|||  ..|.   +|+...|      .|.++|+++|.+      ...++||+|+|||+|+||+|
T Consensus       195 ~g--~~~~-~~ar~vVlatG--~~P~---iP~~~~~------~g~v~Hss~y~~~~~~~~~~~~~gKrV~VVG~G~SA~e  260 (501)
T 4b63_A          195 TG--EISA-RRTRKVVIAIG--GTAK---MPSGLPQ------DPRIIHSSKYCTTLPALLKDKSKPYNIAVLGSGQSAAE  260 (501)
T ss_dssp             TC--CEEE-EEEEEEEECCC--CEEC---CCTTSCC------CTTEEEGGGHHHHHHHHSCCTTSCCEEEEECCSHHHHH
T ss_pred             Cc--eEEE-EEeCEEEECcC--CCCC---CCCCCCC------CcceeeccccccchhhccccccCCcEEEEECCcHHHHH
Confidence            65  4467 89999999999  4555   4555567      889999999875      45689999999999999999


Q ss_pred             HHHHHhhc--cCeEEEEEecCCeeechh
Q 020533          201 IALDLANH--AAKTSLVVRSPVHVLSRE  226 (325)
Q Consensus       201 ~a~~l~~~--~~~v~~~~r~~~~~~p~~  226 (325)
                      ++.+|++.  +.+|++++|++ ++.|..
T Consensus       261 i~~~L~~~~~~~~v~~~~R~~-~~~p~~  287 (501)
T 4b63_A          261 IFHDLQKRYPNSRTTLIMRDS-AMRPSD  287 (501)
T ss_dssp             HHHHHHHHSTTCEEEEECSSS-SCCBCC
T ss_pred             HHHHHHhcCCCceEEEEeCCC-cccccc
Confidence            99999876  67899999998 455544

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=99.94  E-value=1e-26  Score=207.88  Aligned_cols=187  Identities=18%  Similarity=0.327  Sum_probs=151.5

Q ss_pred             CCCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCH
Q 020533            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSR   80 (325)
Q Consensus         1 M~~~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (325)
                      |.+....+||+|||||++|+++|..|++.|++|+|||+++.+||.|.. .|+...+.      .++.+       ...+.
T Consensus         1 M~~~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~-~~~~~~~~------~~~~~-------~~~~~   66 (332)
T 3lzw_A            1 MREDTKVYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSA-LYPEKYIY------DVAGF-------PKIRA   66 (332)
T ss_dssp             CEEEEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHH-HCTTSEEC------CSTTC-------SSEEH
T ss_pred             CCCCCccceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehh-cCCCceEe------ccCCC-------CCCCH
Confidence            443334579999999999999999999999999999999999999953 24333221      11111       12357


Q ss_pred             HHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCC-CCCCCCCCCc
Q 020533           81 AQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT-NPFTPDIRGL  159 (325)
Q Consensus        81 ~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~-~p~~p~~~g~  159 (325)
                      .++.+|+.+.++++++.  ++++++|.+++... .+.|.|.+.+        .+ +.+|+||+|||..+ .|..|++||.
T Consensus        67 ~~~~~~~~~~~~~~~~~--~~~~~~v~~i~~~~-~~~~~v~~~~--------g~-~~~d~vVlAtG~~~~~p~~~~~~g~  134 (332)
T 3lzw_A           67 QELINNLKEQMAKFDQT--ICLEQAVESVEKQA-DGVFKLVTNE--------ET-HYSKTVIITAGNGAFKPRKLELENA  134 (332)
T ss_dssp             HHHHHHHHHHHTTSCCE--EECSCCEEEEEECT-TSCEEEEESS--------EE-EEEEEEEECCTTSCCEECCCCCTTG
T ss_pred             HHHHHHHHHHHHHhCCc--EEccCEEEEEEECC-CCcEEEEECC--------CE-EEeCEEEECCCCCcCCCCCCCCCCh
Confidence            89999999999988754  58999999998875 3479998876        46 88999999999643 7888999999


Q ss_pred             cccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533          160 CSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       160 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                      +.|      .+..+|+ .+.+...+++++++|||+|.+|+|+|..|.+.+.+|+++.|.+.
T Consensus       135 ~~~------~g~~~~~-~~~~~~~~~~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~  188 (332)
T 3lzw_A          135 EQY------EGKNLHY-FVDDLQKFAGRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDK  188 (332)
T ss_dssp             GGG------BTTTEES-SCSCGGGGBTCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSS
T ss_pred             hhc------cCceEEE-ecCCHHHcCCCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCc
Confidence            988      7777887 66666677899999999999999999999999999999999883

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=99.94  E-value=7.4e-26  Score=199.20  Aligned_cols=171  Identities=15%  Similarity=0.167  Sum_probs=136.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHHH
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHL   87 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl   87 (325)
                      +||+|||||++|+++|..|++.|++|+|||+++..+..+...             ..+     +.  ....+..++.+++
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~-------------~~~-----~~--~~~~~~~~~~~~~   62 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHS-------------HGF-----LG--QDGKAPGEIIAEA   62 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCC-------------CSS-----TT--CTTCCHHHHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhh-------------cCC-----cC--CCCCCHHHHHHHH
Confidence            799999999999999999999999999999987544322110             001     11  1245678999999


Q ss_pred             HHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccCCC
Q 020533           88 DHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSAT  167 (325)
Q Consensus        88 ~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~~~  167 (325)
                      .+.+.+++...  .++++|++++.++  +.|.|++.++       .+ +.||+||+|||  ..|..|.+||.+.+     
T Consensus        63 ~~~~~~~~~v~--~~~~~v~~i~~~~--~~~~v~~~~g-------~~-~~~d~vviAtG--~~~~~~~~~g~~~~-----  123 (297)
T 3fbs_A           63 RRQIERYPTIH--WVEGRVTDAKGSF--GEFIVEIDGG-------RR-ETAGRLILAMG--VTDELPEIAGLRER-----  123 (297)
T ss_dssp             HHHHTTCTTEE--EEESCEEEEEEET--TEEEEEETTS-------CE-EEEEEEEECCC--CEEECCCCBTTGGG-----
T ss_pred             HHHHHhcCCeE--EEEeEEEEEEEcC--CeEEEEECCC-------CE-EEcCEEEECCC--CCCCCCCCCCchhh-----
Confidence            99998873222  4466899998875  6698988764       56 89999999999  57888899999887     


Q ss_pred             CCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          168 GTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       168 ~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                       .+..++...+.+...+++++|+|||+|.+|+|+|..|.+.| +|+++.|.+
T Consensus       124 -~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~  173 (297)
T 3fbs_A          124 -WGSAVFHCPYCHGYELDQGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGI  173 (297)
T ss_dssp             -BTTTEESCHHHHTGGGTTCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTT
T ss_pred             -cCCeeEEcccCcchhhcCCEEEEEecCccHHHHHHHhhhcC-cEEEEECCC
Confidence             77777777666666778999999999999999999999998 999998887

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.93  E-value=1.9e-25  Score=200.29  Aligned_cols=181  Identities=22%  Similarity=0.370  Sum_probs=141.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ++||+|||||++|+++|..|++.|++|+|||+++.+||.|... |+...+      +..+.+       ......++.++
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~-~~~~~~------~~~~~~-------~~~~~~~~~~~   70 (335)
T 2zbw_A            5 HTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTAL-YPEKYI------YDVAGF-------PKVYAKDLVKG   70 (335)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHT-CTTSEE------CCSTTC-------SSEEHHHHHHH
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeecc-CCCcee------eccCCC-------CCCCHHHHHHH
Confidence            5799999999999999999999999999999999999998643 332211      111111       12356788999


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCC-CCCCCCCCCccccccC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT-NPFTPDIRGLCSFCSS  165 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~-~p~~p~~~g~~~~~~~  165 (325)
                      +.+.++++++.  ++++++|.+++.++  +.|.|.+.++       .+ +.+|+||+|||..+ .|..|+++|.+.+   
T Consensus        71 l~~~~~~~~~~--~~~~~~v~~i~~~~--~~~~v~~~~g-------~~-~~~~~lv~AtG~~~~~p~~~~i~g~~~~---  135 (335)
T 2zbw_A           71 LVEQVAPFNPV--YSLGERAETLEREG--DLFKVTTSQG-------NA-YTAKAVIIAAGVGAFEPRRIGAPGEREF---  135 (335)
T ss_dssp             HHHHHGGGCCE--EEESCCEEEEEEET--TEEEEEETTS-------CE-EEEEEEEECCTTSEEEECCCCCTTTTTT---
T ss_pred             HHHHHHHcCCE--EEeCCEEEEEEECC--CEEEEEECCC-------CE-EEeCEEEECCCCCCCCCCCCCCCChhhc---
Confidence            99999888854  48899999998875  4788877543       46 89999999999643 6778889998877   


Q ss_pred             CCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533          166 ATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       166 ~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                         .+..+|.. +.+...+.+++|+|||+|.+|+|+|..|++.+.+|+++.|++.
T Consensus       136 ---~~~~~~~~-~~~~~~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~  186 (335)
T 2zbw_A          136 ---EGRGVYYA-VKSKAEFQGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQ  186 (335)
T ss_dssp             ---BTTTEESS-CSCGGGGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSS
T ss_pred             ---cCcEEEEe-cCchhhcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCc
Confidence               55444433 3333456789999999999999999999999999999999983

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.93  E-value=2.2e-25  Score=198.44  Aligned_cols=173  Identities=17%  Similarity=0.237  Sum_probs=140.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ++||+|||||++|+++|..|++.|++|+|||++  +||.|....          ..+.++.+       ......++.+|
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~gg~~~~~~----------~~~~~~~~-------~~~~~~~~~~~   75 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--PGGQLTEAG----------IVDDYLGL-------IEIQASDMIKV   75 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--TTGGGGGCC----------EECCSTTS-------TTEEHHHHHHH
T ss_pred             ccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--CCCeecccc----------cccccCCC-------CCCCHHHHHHH
Confidence            469999999999999999999999999999999  899887520          01111111       12457899999


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA  166 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~~  166 (325)
                      +.+.++++++..  ++ ++|.+++.++  +.|.+.+.++       .+ +.+|+||+|||  +.|..|.+||.+.|    
T Consensus        76 ~~~~~~~~~v~~--~~-~~v~~i~~~~--~~~~v~~~~g-------~~-~~~d~lvlAtG--~~~~~~~i~g~~~~----  136 (323)
T 3f8d_A           76 FNKHIEKYEVPV--LL-DIVEKIENRG--DEFVVKTKRK-------GE-FKADSVILGIG--VKRRKLGVPGEQEF----  136 (323)
T ss_dssp             HHHHHHTTTCCE--EE-SCEEEEEEC----CEEEEESSS-------CE-EEEEEEEECCC--CEECCCCCTTTTTT----
T ss_pred             HHHHHHHcCCEE--EE-EEEEEEEecC--CEEEEEECCC-------CE-EEcCEEEECcC--CCCccCCCCchhhh----
Confidence            999999998765  66 8899998764  6788887664       46 89999999999  55888899999888    


Q ss_pred             CCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          167 TGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       167 ~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                        .+..+|...+.+...+.+++|+|||+|.+|+|+|..|.+.+.+|++++|++
T Consensus       137 --~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~  187 (323)
T 3f8d_A          137 --AGRGISYCSVADAPLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRD  187 (323)
T ss_dssp             --BTTTEESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSS
T ss_pred             --cCCceEEeccCCHhHcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCC
Confidence              777777666655566778999999999999999999999999999999998

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.93  E-value=1.1e-25  Score=201.72  Aligned_cols=181  Identities=15%  Similarity=0.224  Sum_probs=142.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecC----CCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERE----NCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRA   81 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~----~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (325)
                      .++||+|||||++||++|..|++.|++|+|||+.    ..+||.|....          ....++.      ++.+....
T Consensus        21 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~----------~~~~~~~------~~~~~~~~   84 (338)
T 3itj_A           21 VHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTT----------EIENFPG------FPDGLTGS   84 (338)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSS----------EECCSTT------CTTCEEHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccch----------hhcccCC------CcccCCHH
Confidence            3579999999999999999999999999999994    48899887531          0011111      12345678


Q ss_pred             HHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccc
Q 020533           82 QFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCS  161 (325)
Q Consensus        82 ~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~  161 (325)
                      ++.+|+.+.++++++..  ++++ |.+++.+.  +.|.+.+.....+    .. +.+|+||+|+|  +.|..|.+||.+.
T Consensus        85 ~~~~~~~~~~~~~gv~i--~~~~-v~~i~~~~--~~~~v~~~~~~~~----~~-~~~d~vvlAtG--~~~~~~~~~g~~~  152 (338)
T 3itj_A           85 ELMDRMREQSTKFGTEI--ITET-VSKVDLSS--KPFKLWTEFNEDA----EP-VTTDAIILATG--ASAKRMHLPGEET  152 (338)
T ss_dssp             HHHHHHHHHHHHTTCEE--ECSC-EEEEECSS--SSEEEEETTCSSS----CC-EEEEEEEECCC--EEECCCCCTTHHH
T ss_pred             HHHHHHHHHHHHcCCEE--EEeE-EEEEEEcC--CEEEEEEEecCCC----cE-EEeCEEEECcC--CCcCCCCCCCchh
Confidence            99999999999998654  8888 88887754  6788877532222    56 88999999999  5788889999887


Q ss_pred             cccCCCCCccEEecCCCCCCC--CCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533          162 FCSSATGTGEVIHSTQYKNGK--PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       162 ~~~~~~~~g~~~~~~~~~~~~--~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                      |      .+..+++..+.+..  .+.+++++|||+|.+|+|+|..|.+.+.+|+++.|++.
T Consensus       153 ~------~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~  207 (338)
T 3itj_A          153 Y------WQKGISACAVCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDH  207 (338)
T ss_dssp             H------BTTTEESCHHHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             c------cCccEEEchhcccchhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCc
Confidence            7      66667765543333  56789999999999999999999999999999999983

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.93  E-value=3e-25  Score=207.82  Aligned_cols=203  Identities=23%  Similarity=0.354  Sum_probs=146.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcC-----CCeEEEecCCCCCCccCCCCC-CceEeecCC--CccCC--CCCCC------
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQS-----IPYVILERENCYASIWKKYSY-DRLRLHLAK--QFCQL--PHLPF------   70 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g-----~~v~v~e~~~~~Gg~w~~~~y-~~~~~~~~~--~~~~~--~~~~~------   70 (325)
                      .+||+|||||++||++|..|++.|     .+|+|||+++.+|  |....+ ++..++.+.  .+..+  +..++      
T Consensus        30 ~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g--~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l  107 (463)
T 3s5w_A           30 VHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYR--WHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYL  107 (463)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCC--SSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCC--CcCCCCCCCCcCCcchhhccccccCCCCCCChhHhh
Confidence            469999999999999999999999     9999999999888  665544 333332110  00000  00000      


Q ss_pred             ---------CCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCC-CCcE--EEEEeecCCCCceeEEEEEe
Q 020533           71 ---------PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEA-TNMW--NVKASNLLSPGREIEEYYSG  138 (325)
Q Consensus        71 ---------~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~-~~~~--~v~~~~~~~~~~~~~~~~~a  138 (325)
                               +.+...++++.++.+|+.+++++++..  ++++++|++++++++ .+.|  .|++.++.+   +..+ +.|
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g---~~~~-~~~  181 (463)
T 3s5w_A          108 HKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQ--SRYGEEVLRIEPMLSAGQVEALRVISRNADG---EELV-RTT  181 (463)
T ss_dssp             HHTTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTT--EEESEEEEEEEEEEETTEEEEEEEEEEETTS---CEEE-EEE
T ss_pred             hhcCceeecccccCCCCCHHHHHHHHHHHHHHcCCe--EEeCCEEEEEEEecCCCceEEEEEEEecCCC---ceEE-EEe
Confidence                     111234678899999999999998855  499999999988622 2455  566655432   2247 999


Q ss_pred             CeEEEcccCCCCCCCCCCCCccccccCCCCCc--cEEecCCCCCC-CCC-----CCCeEEEECcCCCHHHHHHHHhhc--
Q 020533          139 RFLVVASGETTNPFTPDIRGLCSFCSSATGTG--EVIHSTQYKNG-KPY-----GGKNVLVVGSGNSGMEIALDLANH--  208 (325)
Q Consensus       139 d~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~g--~~~~~~~~~~~-~~~-----~~~~v~VvG~G~s~~e~a~~l~~~--  208 (325)
                      |+||+|||  +.|.+|+  +++.+      .+  .++|+..+.+. ..+     ++++|+|||+|.+|+|+|..|++.  
T Consensus       182 d~lVlAtG--~~p~~p~--~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~sg~e~a~~l~~~~~  251 (463)
T 3s5w_A          182 RALVVSPG--GTPRIPQ--VFRAL------KGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYP  251 (463)
T ss_dssp             SEEEECCC--CEECCCG--GGGGG------TTCTTEEEGGGHHHHHCC-------CEEEEEECCSHHHHHHHHHHHHHCT
T ss_pred             CEEEECCC--CCCCCcc--hhhhc------CCCCcEEECHHHHhhHHHhhhcccCCCeEEEECCCHhHHHHHHHHHhcCC
Confidence            99999999  5676665  24455      55  78998877552 233     689999999999999999999999  


Q ss_pred             cCeEEEEEecCCeeechhhH
Q 020533          209 AAKTSLVVRSPVHVLSREMV  228 (325)
Q Consensus       209 ~~~v~~~~r~~~~~~p~~~~  228 (325)
                      +.+|+++.|++ .++|....
T Consensus       252 ~~~Vt~v~r~~-~~~p~~~~  270 (463)
T 3s5w_A          252 SVQADMILRAS-ALKPADDS  270 (463)
T ss_dssp             TEEEEEECSSS-SCCBCCCC
T ss_pred             CCeEEEEEeCC-CCcCccCC
Confidence            88999999999 47776544

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=99.93  E-value=7.7e-25  Score=195.58  Aligned_cols=184  Identities=20%  Similarity=0.331  Sum_probs=141.0

Q ss_pred             CCCCC-CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCC
Q 020533            1 MKEQA-AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVS   79 (325)
Q Consensus         1 M~~~~-~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (325)
                      |+.+. ..+||+|||||++|+++|..|++.|++|+|||++ .+||.|....          ....++.+      +...+
T Consensus         1 m~~~~~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~----------~~~~~~~~------~~~~~   63 (325)
T 2q7v_A            1 MTAPTAHDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MPGGQIAWSE----------EVENFPGF------PEPIA   63 (325)
T ss_dssp             -CCCCCEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGGGCS----------CBCCSTTC------SSCBC
T ss_pred             CCCCccccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CCCccccccc----------ccccCCCC------CCCCC
Confidence            54332 3579999999999999999999999999999999 6898876431          00111111      12346


Q ss_pred             HHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCC-cEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCC
Q 020533           80 RAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATN-MWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRG  158 (325)
Q Consensus        80 ~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~-~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g  158 (325)
                      ..++.+++.+.++++++..  ++ ++|.+++.+...+ .|.|.+.++       .+ +.+|+||+|||  +.|..|++||
T Consensus        64 ~~~~~~~l~~~~~~~gv~~--~~-~~v~~i~~~~~~~~~~~v~~~~g-------~~-~~~~~vv~AtG--~~~~~~~i~g  130 (325)
T 2q7v_A           64 GMELAQRMHQQAEKFGAKV--EM-DEVQGVQHDATSHPYPFTVRGYN-------GE-YRAKAVILATG--ADPRKLGIPG  130 (325)
T ss_dssp             HHHHHHHHHHHHHHTTCEE--EE-CCEEEEEECTTSSSCCEEEEESS-------CE-EEEEEEEECCC--EEECCCCCTT
T ss_pred             HHHHHHHHHHHHHHcCCEE--Ee-eeEEEEEeccCCCceEEEEECCC-------CE-EEeCEEEECcC--CCcCCCCCCC
Confidence            7889999999999998654  55 6888888752112 388877654       46 89999999999  5678888999


Q ss_pred             ccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533          159 LCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       159 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                      .+.+      .+..+|+..+.+...+.+++|+|||+|.+|+|+|..|++.+.+|+++.|++.
T Consensus       131 ~~~~------~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  186 (325)
T 2q7v_A          131 EDNF------WGKGVSTCATCDGFFYKGKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDT  186 (325)
T ss_dssp             TTTT------BTTTEESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSS
T ss_pred             hhhc------cCceEEEeccCCHHHcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCc
Confidence            8877      6666776554444456789999999999999999999999999999999883

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=99.93  E-value=6.2e-25  Score=199.45  Aligned_cols=186  Identities=20%  Similarity=0.317  Sum_probs=136.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCCCCCCccCCCCCCceEeecCCC---ccCCCCCCC--CCC------C
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENCYASIWKKYSYDRLRLHLAKQ---FCQLPHLPF--PSS------Y   74 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~---~~~~~~~~~--~~~------~   74 (325)
                      .+||+|||||++|+++|..|++.|. +|+|||+++ +||.|...... .....+..   .+.+..+..  +..      .
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~   81 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSFKHWPKS-TRTITPSFTSNGFGMPDMNAISMDTSPAFTFN   81 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHHHTSCTT-CBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHC
T ss_pred             cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCccccCccc-ccccCcchhcccCCchhhhhcccccccccccc
Confidence            4799999999999999999999999 999999998 99988643111 11111111   111111110  111      1


Q ss_pred             CCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533           75 PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (325)
Q Consensus        75 ~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p  154 (325)
                      ..++...++.+|+.++++++++.  ++++++|.+++.++  +.|.|.+.+        .+ +.||+||+|||.++.|   
T Consensus        82 ~~~~~~~~~~~~l~~~~~~~gv~--i~~~~~v~~i~~~~--~~~~v~~~~--------g~-~~~d~vVlAtG~~~~p---  145 (369)
T 3d1c_A           82 EEHISGETYAEYLQVVANHYELN--IFENTVVTNISADD--AYYTIATTT--------ET-YHADYIFVATGDYNFP---  145 (369)
T ss_dssp             CSSCBHHHHHHHHHHHHHHTTCE--EECSCCEEEEEECS--SSEEEEESS--------CC-EEEEEEEECCCSTTSB---
T ss_pred             ccCCCHHHHHHHHHHHHHHcCCe--EEeCCEEEEEEECC--CeEEEEeCC--------CE-EEeCEEEECCCCCCcc---
Confidence            24567789999999999999865  48999999998764  578888754        24 7899999999976554   


Q ss_pred             CCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCe
Q 020533          155 DIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVH  221 (325)
Q Consensus       155 ~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~  221 (325)
                      .+|+ +          ..+|+..+.+...+++++|+|||+|.+|+|+|..|++.|.+|+++.|++.+
T Consensus       146 ~ip~-~----------~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~  201 (369)
T 3d1c_A          146 KKPF-K----------YGIHYSEIEDFDNFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGL  201 (369)
T ss_dssp             CCCS-S----------SCEEGGGCSCGGGSCSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC----
T ss_pred             CCCC-C----------ceechhhcCChhhcCCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCC
Confidence            3444 2          246777777666678899999999999999999999999999999999843

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.92  E-value=1.4e-24  Score=196.72  Aligned_cols=181  Identities=19%  Similarity=0.314  Sum_probs=141.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      .+||+|||||++|+++|..|++.|++|+|||+++.+||.|... ++....      +..+.+       ......++.++
T Consensus        14 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~-~~~~~~------~~~~~~-------~~~~~~~~~~~   79 (360)
T 3ab1_A           14 MRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAAL-YPEKHI------YDVAGF-------PEVPAIDLVES   79 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHT-CTTSEE------CCSTTC-------SSEEHHHHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccc-CCCccc------ccCCCC-------CCCCHHHHHHH
Confidence            5799999999999999999999999999999999999988632 322111      111111       11356788999


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCC-CCCCCCCCC-cccccc
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT-NPFTPDIRG-LCSFCS  164 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~-~p~~p~~~g-~~~~~~  164 (325)
                      +.+.++++++.  ++++++|++++.++ .+.|.|++.++       .+ +.||+||+|+|..+ .|..|++|| .+.+  
T Consensus        80 l~~~~~~~~~~--~~~~~~v~~i~~~~-~~~~~v~~~~g-------~~-~~~~~li~AtG~~~~~~~~~~i~g~~~~~--  146 (360)
T 3ab1_A           80 LWAQAERYNPD--VVLNETVTKYTKLD-DGTFETRTNTG-------NV-YRSRAVLIAAGLGAFEPRKLPQLGNIDHL--  146 (360)
T ss_dssp             HHHHHHTTCCE--EECSCCEEEEEECT-TSCEEEEETTS-------CE-EEEEEEEECCTTCSCCBCCCGGGCCCTTT--
T ss_pred             HHHHHHHhCCE--EEcCCEEEEEEECC-CceEEEEECCC-------cE-EEeeEEEEccCCCcCCCCCCCCCCchhhC--
Confidence            99999988754  48899999998864 34788887653       46 89999999999654 677788888 7777  


Q ss_pred             CCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          165 SATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       165 ~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                          .+..+|.. +.+...+.+++|+|||+|.+|+|+|..|.+.+.+|+++.|++
T Consensus       147 ----~~~~v~~~-~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~  196 (360)
T 3ab1_A          147 ----TGSSVYYA-VKSVEDFKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGH  196 (360)
T ss_dssp             ----BTTTEESS-CSCGGGGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSS
T ss_pred             ----cCceEEEe-cCCHHHcCCCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCC
Confidence                56545443 334445678999999999999999999999999999999988

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=99.92  E-value=1.3e-24  Score=192.79  Aligned_cols=175  Identities=21%  Similarity=0.339  Sum_probs=138.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCC-CeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSI-PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      +||+|||||++|+++|..|++.|+ +|+|||++ ..||.|....          ....++.      ++......++.++
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~-~~gg~~~~~~----------~~~~~~~------~~~~~~~~~~~~~   64 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKG-MPGGQITGSS----------EIENYPG------VKEVVSGLDFMQP   64 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSS-STTCGGGGCS----------CBCCSTT------CCSCBCHHHHHHH
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCC-CCCccccccc----------ccccCCC------CcccCCHHHHHHH
Confidence            699999999999999999999999 99999995 6788876421          0001111      1234577899999


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA  166 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~~  166 (325)
                      +.+.++++++..  ++ ++|.+++.++  +.|.|.+.++       .+ +.+|+||+|||  +.|..|++||.+.|    
T Consensus        65 l~~~~~~~~v~~--~~-~~v~~i~~~~--~~~~v~~~~g-------~~-~~~~~vv~AtG--~~~~~~~~~g~~~~----  125 (311)
T 2q0l_A           65 WQEQCFRFGLKH--EM-TAVQRVSKKD--SHFVILAEDG-------KT-FEAKSVIIATG--GSPKRTGIKGESEY----  125 (311)
T ss_dssp             HHHHHHTTSCEE--EC-SCEEEEEEET--TEEEEEETTS-------CE-EEEEEEEECCC--EEECCCCCBTHHHH----
T ss_pred             HHHHHHHcCCEE--EE-EEEEEEEEcC--CEEEEEEcCC-------CE-EECCEEEECCC--CCCCCCCCCChhhc----
Confidence            999999888653  66 7899998765  5688876543       46 89999999999  67788899998877    


Q ss_pred             CCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533          167 TGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       167 ~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                        .+..+|+..+.+.....+++|+|||+|.+|+|+|..|++.|.+|+++.|++.
T Consensus       126 --~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  177 (311)
T 2q0l_A          126 --WGKGVSTCATCDGFFYKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDG  177 (311)
T ss_dssp             --BTTTEESCHHHHGGGGTTSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSS
T ss_pred             --cCCcEEEeecCChhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCc
Confidence              6666776554444456789999999999999999999999999999999884

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=99.92  E-value=1.9e-24  Score=191.78  Aligned_cols=178  Identities=21%  Similarity=0.319  Sum_probs=142.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEE-EecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVI-LERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI   84 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v-~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (325)
                      .++||+|||||++||++|..|++.|++|+| +|+ +.+||.|.....          ...++      .++...+..++.
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~~gG~~~~~~~----------~~~~~------~~~~~~~~~~~~   65 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GMPGGQITSSSE----------IENYP------GVAQVMDGISFM   65 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SSTTGGGGGCSC----------BCCST------TCCSCBCHHHHH
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CCCCceeeeece----------eccCC------CCCCCCCHHHHH
Confidence            357999999999999999999999999999 999 678998864310          00111      112345788999


Q ss_pred             HHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCcccccc
Q 020533           85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS  164 (325)
Q Consensus        85 ~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~  164 (325)
                      +|+.++++++++..  +++ +|.++ .++..+.|.+.....     .  + +.+|+||+|||  +.|..|.+||.+.+  
T Consensus        66 ~~~~~~~~~~~v~~--~~~-~v~~i-~~~~~~~~~v~~~~~-----~--~-~~~d~lvlAtG--~~~~~~~~~g~~~~--  129 (315)
T 3r9u_A           66 APWSEQCMRFGLKH--EMV-GVEQI-LKNSDGSFTIKLEGG-----K--T-ELAKAVIVCTG--SAPKKAGFKGEDEF--  129 (315)
T ss_dssp             HHHHHHHTTTCCEE--ECC-CEEEE-EECTTSCEEEEETTS-----C--E-EEEEEEEECCC--EEECCCCCBTTTTT--
T ss_pred             HHHHHHHHHcCcEE--EEE-EEEEE-ecCCCCcEEEEEecC-----C--E-EEeCEEEEeeC--CCCCCCCCCChhhc--
Confidence            99999999998654  676 78888 654336788644432     2  6 89999999999  67888999999888  


Q ss_pred             CCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533          165 SATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       165 ~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                          .+..+|+..+.+...+.+++++|||+|.+|+|+|..|.+.+.+|++++|++.
T Consensus       130 ----~~~~~~~~~~~~~~~~~~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~  181 (315)
T 3r9u_A          130 ----FGKGVSTCATCDGFFYKNKEVAVLGGGDTALEEALYLANICSKIYLIHRRDE  181 (315)
T ss_dssp             ----BTTTEESCHHHHGGGGTTSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSS
T ss_pred             ----CCCeEEeeecccccccCcCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCC
Confidence                7778887766665667789999999999999999999999999999999984

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=99.92  E-value=1e-24  Score=193.74  Aligned_cols=183  Identities=17%  Similarity=0.268  Sum_probs=131.6

Q ss_pred             CCCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCH
Q 020533            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSR   80 (325)
Q Consensus         1 M~~~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (325)
                      |++.  .|||+||||||+|++||.+|++.|++|+|||+. .+||++....          ....++.+       .....
T Consensus         2 Mte~--~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~-~~gG~~~~~~----------~i~~~p~~-------~~~~~   61 (312)
T 4gcm_A            2 MTEI--DFDIAIIGAGPAGMTAAVYASRANLKTVMIERG-IPGGQMANTE----------EVENFPGF-------EMITG   61 (312)
T ss_dssp             --CC--SEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGGGCS----------CBCCSTTC-------SSBCH
T ss_pred             CCCC--CCCEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCCeeeccc----------ccCCcCCc-------cccch
Confidence            5443  589999999999999999999999999999986 4777654210          01111111       23456


Q ss_pred             HHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCcc
Q 020533           81 AQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLC  160 (325)
Q Consensus        81 ~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~  160 (325)
                      .++.........+.....  ..+..+......   ....+ ..++       .+ +.||+||+|||  +.|+.|++||.+
T Consensus        62 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~-~~~~-------~~-~~~d~liiAtG--s~~~~~~ipG~~  125 (312)
T 4gcm_A           62 PDLSTKMFEHAKKFGAVY--QYGDIKSVEDKG---EYKVI-NFGN-------KE-LTAKAVIIATG--AEYKKIGVPGEQ  125 (312)
T ss_dssp             HHHHHHHHHHHHHTTCEE--EECCCCEEEECS---SCEEE-ECSS-------CE-EEEEEEEECCC--EEECCCCCTTTT
T ss_pred             HHHHHHHHHHHhhccccc--cceeeeeeeeee---cceee-ccCC-------eE-EEeceeEEccc--CccCcCCCCChh
Confidence            677777777776665433  444444333322   22222 2222       57 89999999999  789999999998


Q ss_pred             ccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechh
Q 020533          161 SFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSRE  226 (325)
Q Consensus       161 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~  226 (325)
                      .+      .+..+++....+...+++|+|+|||+|++|+|+|..|++.|.+||+++|++ .++|..
T Consensus       126 ~~------~~~~v~~~~~~~~~~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~~~~~~  184 (312)
T 4gcm_A          126 EL------GGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRD-ELRAQR  184 (312)
T ss_dssp             TT------BTTTEESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSS-SCCSCH
T ss_pred             hh------CCccEEeeeccCccccCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeccc-ccCcch
Confidence            87      677777666655566788999999999999999999999999999999998 455543

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=99.92  E-value=4.7e-24  Score=191.40  Aligned_cols=176  Identities=19%  Similarity=0.267  Sum_probs=136.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      ..+||+|||||++|+++|..|++.|++|+|||+. .+||.|.....          ...++.+      +......++.+
T Consensus        13 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~~----------~~~~~~~------~~~~~~~~~~~   75 (335)
T 2a87_A           13 PVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGT-SFGGALMTTTD----------VENYPGF------RNGITGPELMD   75 (335)
T ss_dssp             CCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCS-SCSCGGGSCSC----------BCCSTTC------TTCBCHHHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceeccch----------hhhcCCC------CCCCCHHHHHH
Confidence            3579999999999999999999999999999976 67887754210          0011111      12245678999


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEE-EEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCcccccc
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNV-KASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS  164 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v-~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~  164 (325)
                      ++.+.++++++..  ++++ |.+++.   .+.|+| .+.++       .+ +.+|+||+|||  +.|..|++||.+.|  
T Consensus        76 ~l~~~~~~~~v~~--~~~~-v~~i~~---~~~~~v~~~~~g-------~~-~~~d~lviAtG--~~~~~~~i~g~~~~--  137 (335)
T 2a87_A           76 EMREQALRFGADL--RMED-VESVSL---HGPLKSVVTADG-------QT-HRARAVILAMG--AAARYLQVPGEQEL--  137 (335)
T ss_dssp             HHHHHHHHTTCEE--ECCC-EEEEEC---SSSSEEEEETTS-------CE-EEEEEEEECCC--EEECCCCCTHHHHT--
T ss_pred             HHHHHHHHcCCEE--EEee-EEEEEe---CCcEEEEEeCCC-------CE-EEeCEEEECCC--CCccCCCCCchHhc--
Confidence            9999999988654  7776 888876   356888 65443       46 89999999999  56788889998877  


Q ss_pred             CCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533          165 SATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       165 ~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                          .+..+|+..+.+.....+++|+|||+|.+|+|+|..|++.+.+|+++.|++.
T Consensus       138 ----~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~  189 (335)
T 2a87_A          138 ----LGRGVSSCATCDGFFFRDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDE  189 (335)
T ss_dssp             ----BTTTEESCHHHHGGGGTTCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSS
T ss_pred             ----cCCceEEeeccchhhcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCc
Confidence                6666776544333345789999999999999999999999999999999883

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=99.91  E-value=4.5e-24  Score=189.24  Aligned_cols=177  Identities=19%  Similarity=0.267  Sum_probs=137.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ++||+|||||++|+++|..|++.|++++|+|+  ..||.|....  .           ++.+.    ...+....++.++
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~--~~gG~~~~~~--~-----------~~~~~----~~~~~~~~~~~~~   61 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGE--RFGGQILDTV--D-----------IENYI----SVPKTEGQKLAGA   61 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECS--STTGGGGGCC--E-----------ECCBT----TBSSEEHHHHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeC--CCCceecccc--c-----------ccccc----CcCCCCHHHHHHH
Confidence            36999999999999999999999999999986  4788886421  0           00000    0123456789999


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCC-CCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEA-TNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~-~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~  165 (325)
                      +.++++++++.  ++++++|..++.+.. .+.|.|.+.++       .+ +.||+||+|||  +.|..|++||.+.|   
T Consensus        62 ~~~~~~~~~v~--~~~~~~v~~i~~~~~~~~~~~v~~~~g-------~~-~~~~~lv~AtG--~~~~~~~~~g~~~~---  126 (310)
T 1fl2_A           62 LKVHVDEYDVD--VIDSQSASKLIPAAVEGGLHQIETASG-------AV-LKARSIIVATG--AKWRNMNVPGEDQY---  126 (310)
T ss_dssp             HHHHHHTSCEE--EECSCCEEEEECCSSTTCCEEEEETTS-------CE-EEEEEEEECCC--EEECCCCCTTTTTT---
T ss_pred             HHHHHHHcCCe--EEccCEEEEEEecccCCceEEEEECCC-------CE-EEeCEEEECcC--CCcCCCCCCChhhc---
Confidence            99999988754  488889999976532 24788887653       46 89999999999  56777889998877   


Q ss_pred             CCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533          166 ATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       166 ~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                         .+..+|+....+...+.+++|+|||+|.+|+|+|..|++.+.+|+++.|++.
T Consensus       127 ---~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  178 (310)
T 1fl2_A          127 ---RTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE  178 (310)
T ss_dssp             ---BTTTEESCHHHHGGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSS
T ss_pred             ---ccceeEEeccCcHhhcCCCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcc
Confidence               6665665543333445689999999999999999999999999999999984

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=99.91  E-value=7.9e-24  Score=188.44  Aligned_cols=175  Identities=18%  Similarity=0.295  Sum_probs=135.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      .+||+|||||++|+++|..|++.|++|+|||+. .+||.|.....          ...++.      ++......++.++
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~~----------~~~~~~------~~~~~~~~~~~~~   67 (320)
T 1trb_A            5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTTTE----------VENWPG------DPNDLTGPLLMER   67 (320)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS-STTGGGGGCSB----------CCCSTT------CCSSCBHHHHHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEccC-CCCceEecchh----------hhhCCC------CCCCCCHHHHHHH
Confidence            479999999999999999999999999999975 67887653210          001111      1123456789999


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA  166 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~~  166 (325)
                      +.+.++++++..  ++++ +..++.+.  +.|++ ..++       .+ +.+|+||+|||  +.|..|++||.+.|    
T Consensus        68 ~~~~~~~~~~~~--~~~~-v~~i~~~~--~~~~v-~~~~-------~~-~~~~~lv~AtG--~~~~~~~~~g~~~~----  127 (320)
T 1trb_A           68 MHEHATKFETEI--IFDH-INKVDLQN--RPFRL-NGDN-------GE-YTCDALIIATG--ASARYLGLPSEEAF----  127 (320)
T ss_dssp             HHHHHHHTTCEE--ECCC-EEEEECSS--SSEEE-EESS-------CE-EEEEEEEECCC--EEECCCCCHHHHHT----
T ss_pred             HHHHHHHCCCEE--EEee-eeEEEecC--CEEEE-EeCC-------CE-EEcCEEEECCC--CCcCCCCCCChHHh----
Confidence            999999988654  7775 88887654  67887 4432       46 89999999999  56788889998777    


Q ss_pred             CCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533          167 TGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       167 ~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                        .+..+|+..+.+.....+++|+|||+|.+|+|+|..|++.+.+|+++.|++.
T Consensus       128 --~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  179 (320)
T 1trb_A          128 --KGRGVSACATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG  179 (320)
T ss_dssp             --BTTTEESCHHHHGGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             --CCceeEecccCCccccCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCc
Confidence              6666665544443445789999999999999999999999999999999884

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=99.91  E-value=6.4e-24  Score=190.12  Aligned_cols=176  Identities=15%  Similarity=0.218  Sum_probs=135.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEec----CCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILER----ENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQ   82 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~----~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (325)
                      .+||+|||||++|+++|..|++.|++|+|||+    ....||.|....          ....++.+      +......+
T Consensus         8 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~----------~~~~~~~~------~~~~~~~~   71 (333)
T 1vdc_A            8 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTT----------DVENFPGF------PEGILGVE   71 (333)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCS----------EECCSTTC------TTCEEHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeecc----------ccccCCCC------ccCCCHHH
Confidence            47999999999999999999999999999999    566777765321          00111111      12245678


Q ss_pred             HHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccc-
Q 020533           83 FIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCS-  161 (325)
Q Consensus        83 ~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~-  161 (325)
                      +.+++.+.++++++..  ++++ |.+++.+.  +.|+|++ ++       .+ +.+|+||+|+|  +.|..|++||.+. 
T Consensus        72 ~~~~l~~~~~~~gv~~--~~~~-v~~i~~~~--~~~~v~~-~~-------~~-~~~~~vv~A~G--~~~~~~~~~g~~~~  135 (333)
T 1vdc_A           72 LTDKFRKQSERFGTTI--FTET-VTKVDFSS--KPFKLFT-DS-------KA-ILADAVILAIG--AVAKRLSFVGSGEV  135 (333)
T ss_dssp             HHHHHHHHHHHTTCEE--ECCC-CCEEECSS--SSEEEEC-SS-------EE-EEEEEEEECCC--EEECCCCCBTCSSS
T ss_pred             HHHHHHHHHHHCCCEE--EEeE-EEEEEEcC--CEEEEEE-CC-------cE-EEcCEEEECCC--CCcCCCCCCCcccc
Confidence            9999999999888654  7776 88887654  6788887 32       57 89999999999  5677888998766 


Q ss_pred             ---cccCCCCCccEEecCCCCCCCC--CCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533          162 ---FCSSATGTGEVIHSTQYKNGKP--YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       162 ---~~~~~~~~g~~~~~~~~~~~~~--~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                         |      .+..+|+..+.+...  ..+++|+|||+|.+|+|+|..|.+.+.+|+++.|++.
T Consensus       136 ~~~~------~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~  193 (333)
T 1vdc_A          136 LGGF------WNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDA  193 (333)
T ss_dssp             SSCC------BTTTEESCHHHHTTSGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             cccc------ccCcEEEeccCccchhhcCCCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCc
Confidence               5      555666554433333  5789999999999999999999999999999999984

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=99.91  E-value=1.3e-23  Score=187.08  Aligned_cols=174  Identities=16%  Similarity=0.315  Sum_probs=133.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      .+||+|||||++|+++|..|++.|++|+|||+. .+||.|....          ....++.+       ......++.++
T Consensus        16 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~----------~~~~~~~~-------~~~~~~~~~~~   77 (319)
T 3cty_A           16 DFDVVIVGAGAAGFSAAVYAARSGFSVAILDKA-VAGGLTAEAP----------LVENYLGF-------KSIVGSELAKL   77 (319)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-STTGGGGGCS----------CBCCBTTB-------SSBCHHHHHHH
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCC-CCCccccccc----------hhhhcCCC-------cccCHHHHHHH
Confidence            479999999999999999999999999999994 6788775321          00011110       13456788999


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA  166 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~~  166 (325)
                      +.+.++++++.  +++ .+|.+++.+.  +.|.|.+.+        .+ +.+|+||+|+|  +.|..|++||.+.+    
T Consensus        78 ~~~~~~~~~v~--~~~-~~v~~i~~~~--~~~~v~~~~--------~~-~~~~~li~AtG--~~~~~~~i~g~~~~----  137 (319)
T 3cty_A           78 FADHAANYAKI--REG-VEVRSIKKTQ--GGFDIETND--------DT-YHAKYVIITTG--TTHKHLGVKGESEY----  137 (319)
T ss_dssp             HHHHHHTTSEE--EET-CCEEEEEEET--TEEEEEESS--------SE-EEEEEEEECCC--EEECCCCCBTTTTT----
T ss_pred             HHHHHHHcCCE--EEE-eeEEEEEEeC--CEEEEEECC--------CE-EEeCEEEECCC--CCcccCCCCChHHh----
Confidence            99999988754  355 6888888764  568776622        46 88999999999  56788889988766    


Q ss_pred             CCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533          167 TGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       167 ~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                        .+..+|.....+.....+++|+|||+|.+|+|+|..|++.+.+|+++.|++.
T Consensus       138 --~~~~~~~~~~~~~~~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~  189 (319)
T 3cty_A          138 --FGKGTSYCSTCDGYLFKGKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPK  189 (319)
T ss_dssp             --BTTTEESCHHHHGGGGBTSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSS
T ss_pred             --CCceEEEEEecchhhcCCCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCc
Confidence              5555555433333345689999999999999999999999999999999884

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=99.90  E-value=9.5e-24  Score=187.42  Aligned_cols=182  Identities=15%  Similarity=0.250  Sum_probs=132.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      .|||+||||||+|++||.+|+++|++|+|||+.. .||.+...+.+.     ......++.      ++...+..++.++
T Consensus         4 ~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~-~gg~~~~G~~~~-----~~~i~~~~g------~~~~i~~~~l~~~   71 (314)
T 4a5l_A            4 IHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFM-AGGVAAGGQLTT-----TTIIENFPG------FPNGIDGNELMMN   71 (314)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS-GGGCCTTCGGGG-----SSEECCSTT------CTTCEEHHHHHHH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCCcccCCCcCC-----hHHhhhccC------CcccCCHHHHHHH
Confidence            5899999999999999999999999999999976 344332221110     011111111      1234567889999


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA  166 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~~  166 (325)
                      +.+.+++++..   .....+.......  ..+.+.+.+.       .+ +.+|+||+|||  +.|+.|++||.+.+    
T Consensus        72 ~~~~~~~~~~~---~~~~~v~~~~~~~--~~~~~~~~~~-------~~-~~~~~liiATG--~~~~~~~ipG~~~~----  132 (314)
T 4a5l_A           72 MRTQSEKYGTT---IITETIDHVDFST--QPFKLFTEEG-------KE-VLTKSVIIATG--ATAKRMHVPGEDKY----  132 (314)
T ss_dssp             HHHHHHHTTCE---EECCCEEEEECSS--SSEEEEETTC-------CE-EEEEEEEECCC--EEECCCCCTTHHHH----
T ss_pred             HHHHHhhcCcE---EEEeEEEEeecCC--CceEEEECCC-------eE-EEEeEEEEccc--ccccccCCCccccc----
Confidence            99999988764   3344455555443  4455555443       57 89999999999  78889999999876    


Q ss_pred             CCCccEEecCCCCCC--CCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCe
Q 020533          167 TGTGEVIHSTQYKNG--KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVH  221 (325)
Q Consensus       167 ~~~g~~~~~~~~~~~--~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~  221 (325)
                        .+..++...+.+.  ..+++++++|||+|++|+|+|..|++.|.+||+++|.+..
T Consensus       133 --~~~~~~~~~~~~~~~~~~~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~  187 (314)
T 4a5l_A          133 --WQNGVSACAICDGAVPIFRNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAF  187 (314)
T ss_dssp             --BTTTEESCHHHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             --cccceeeehhhhhhhhhcCCCeEEEECCChHHHHHHHHHHHhCCeeeeecccccc
Confidence              5555665544332  2356899999999999999999999999999999998743

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.90  E-value=8.6e-23  Score=193.61  Aligned_cols=178  Identities=19%  Similarity=0.266  Sum_probs=140.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      ..+||+|||||++|+++|..|++.|++++|+|+  .+||.|....  .        ...+..       ..+....++.+
T Consensus       211 ~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~--~~GG~~~~~~--~--------~~~~~~-------~~~~~~~~l~~  271 (521)
T 1hyu_A          211 DAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGE--RFGGQVLDTV--D--------IENYIS-------VPKTEGQKLAG  271 (521)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECS--STTGGGTTCS--C--------BCCBTT-------BSSBCHHHHHH
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCeEEEEEC--CCCCcccccc--c--------ccccCC-------CCCCCHHHHHH
Confidence            467999999999999999999999999999986  5788886421  0        000000       01346788999


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCC-CCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCcccccc
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEA-TNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS  164 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~-~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~  164 (325)
                      ++.+.++++++.  ++++++|.+++++.. .+.|.|++.++       .+ +.+|+||+|||  +.|..|++||.+.|  
T Consensus       272 ~l~~~~~~~gv~--v~~~~~v~~i~~~~~~~~~~~V~~~~g-------~~-~~~d~vVlAtG--~~~~~~~ipG~~~~--  337 (521)
T 1hyu_A          272 ALKAHVSDYDVD--VIDSQSASKLVPAATEGGLHQIETASG-------AV-LKARSIIIATG--AKWRNMNVPGEDQY--  337 (521)
T ss_dssp             HHHHHHHTSCEE--EECSCCEEEEECCSSTTSCEEEEETTS-------CE-EEEEEEEECCC--EEECCCCCTTTTTT--
T ss_pred             HHHHHHHHcCCE--EEcCCEEEEEEeccCCCceEEEEECCC-------CE-EEcCEEEECCC--CCcCCCCCCChhhh--
Confidence            999999988865  488989999986432 34788887654       46 89999999999  56777889998887  


Q ss_pred             CCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533          165 SATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       165 ~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                          .+..++.....+...+.+++|+|||+|++|+|+|..|+..+.+|+++.|.+.
T Consensus       338 ----~~~~v~~~~~~~~~~~~~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~  389 (521)
T 1hyu_A          338 ----RTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE  389 (521)
T ss_dssp             ----TTTTEECCTTCCGGGGBTSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSS
T ss_pred             ----cCceEEEeecCchhhcCCCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcc
Confidence                6666666555444456789999999999999999999999999999999884

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=99.90  E-value=4.5e-23  Score=182.57  Aligned_cols=175  Identities=13%  Similarity=0.215  Sum_probs=127.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      ++|||+||||||+||+||.+|++.|++|+|||++. .||.+..+ |+              .++..    ...+..++.+
T Consensus         5 ~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~-~gg~~~~~-~~--------------~~~~~----~~~~~~~~~~   64 (304)
T 4fk1_A            5 KYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNT-NRNRVTQN-SH--------------GFITR----DGIKPEEFKE   64 (304)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC-CGGGGSSC-BC--------------CSTTC----TTBCHHHHHH
T ss_pred             CCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC-CCCeeeee-cC--------------CccCC----CCCCHHHHHH
Confidence            46899999999999999999999999999999975 45543222 11              11111    1234567777


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~  165 (325)
                      ...+.+.+++...  ++...+..+...+ .+.+++.+.++       .+ +.||+||+|||  +.|+.|++||.+.+   
T Consensus        65 ~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~v~~~~g-------~~-~~a~~liiATG--s~p~~p~i~G~~~~---  128 (304)
T 4fk1_A           65 IGLNEVMKYPSVH--YYEKTVVMITKQS-TGLFEIVTKDH-------TK-YLAERVLLATG--MQEEFPSIPNVREY---  128 (304)
T ss_dssp             HHHHHHTTSTTEE--EEECCEEEEEECT-TSCEEEEETTC-------CE-EEEEEEEECCC--CEEECCSCTTHHHH---
T ss_pred             HHHHHHHhcCCEE--EEeeEEEEeeecC-CCcEEEEECCC-------CE-EEeCEEEEccC--CccccccccCcccc---
Confidence            7666666665433  4555566665543 46678877664       57 89999999999  78999999999887   


Q ss_pred             CCCCccEEecCCCCCCCCCCCCeEEEECcCCC-HHHHHHHHhhccCeEEEEEecC
Q 020533          166 ATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNS-GMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       166 ~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s-~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                         .+..++.....+...+++++++|||+|.. +.|+|..+.+.+.+|+++.|.+
T Consensus       129 ---~~~~v~~~~~~~~~~~~~~~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~  180 (304)
T 4fk1_A          129 ---YGKSLFSCPYCDGWELKDQPLIIISENEDHTLHMTKLVYNWSTDLVIATNGN  180 (304)
T ss_dssp             ---BTTTEESCHHHHSGGGTTSCEEEECCSHHHHHHHHHHHTTTCSCEEEECSSC
T ss_pred             ---ccceeeeccccchhHhcCCceeeecCCCchhhhHHHHHHhCCceEEEEeccc
Confidence               66666655555555677889999998865 5788888888889999888776

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=99.87  E-value=1.4e-21  Score=185.43  Aligned_cols=193  Identities=16%  Similarity=0.188  Sum_probs=131.9

Q ss_pred             CCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCC-CCceEeecCCC----ccCCCCCC-CCCCCCCCC
Q 020533            5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYS-YDRLRLHLAKQ----FCQLPHLP-FPSSYPMFV   78 (325)
Q Consensus         5 ~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~-y~~~~~~~~~~----~~~~~~~~-~~~~~~~~~   78 (325)
                      +.++||+|||||++|+++|..|++.|.+|+|||+++.+||+|.+.. .+...+.....    ......+. ++.....++
T Consensus        41 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~  120 (523)
T 1mo9_A           41 PREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVV  120 (523)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCcccccCcCchHHHHHHHHHHHHHhhhhhcCcHHHHHhhhh
Confidence            3468999999999999999999999999999999998999886321 11100000000    00001111 222223345


Q ss_pred             CHHHHHHHHHH-------HH-----HHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEccc
Q 020533           79 SRAQFIEHLDH-------YV-----SHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASG  146 (325)
Q Consensus        79 ~~~~~~~yl~~-------~a-----~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG  146 (325)
                      +..++.+++..       ..     ++.++..  +++.++..++.      ++|.+. +       .. +.+|+||+|||
T Consensus       121 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~gv~~--~~~~~v~~i~~------~~v~~~-g-------~~-~~~d~lViATG  183 (523)
T 1mo9_A          121 GIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEY--ILNCPAKVIDN------HTVEAA-G-------KV-FKAKNLILAVG  183 (523)
T ss_dssp             CHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCE--EESSCCEEEET------TEEEET-T-------EE-EEBSCEEECCC
T ss_pred             hHHHHHHHHHhhhhhhhhhhhhcccccCCcEE--EEeeEEEEeeC------CEEEEC-C-------EE-EEeCEEEECCC
Confidence            57777777653       33     5566543  54777776642      245554 2       57 89999999999


Q ss_pred             CCCCCCCCCCCCccccccCCCCCccEEecCCCC-CCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeech
Q 020533          147 ETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYK-NGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSR  225 (325)
Q Consensus       147 ~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~  225 (325)
                        +.|..|++||.+..        .++++.++. ......+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ .++|.
T Consensus       184 --s~p~~p~i~G~~~~--------~v~~~~~~~~~l~~~~g~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~-~~l~~  252 (523)
T 1mo9_A          184 --AGPGTLDVPGVNAK--------GVFDHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTE-PLKLI  252 (523)
T ss_dssp             --EECCCCCSTTTTSB--------TEEEHHHHHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC-TTTTC
T ss_pred             --CCCCCCCCCCcccC--------cEeeHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEecC-ccccc
Confidence              78889999987642        255655554 3333445999999999999999999999999999999998 45554

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=99.87  E-value=1.7e-22  Score=194.59  Aligned_cols=186  Identities=17%  Similarity=0.255  Sum_probs=130.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF   83 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (325)
                      .+++|+|||||++||++|..|++.  |.+|+|||+++.++       |..+.+  +.   ....       ........+
T Consensus        35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~-------~~~~~l--p~---~~~g-------~~~~~~~~~   95 (588)
T 3ics_A           35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYIS-------FANCGL--PY---YIGG-------VITERQKLL   95 (588)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSS-------BCGGGH--HH---HHTT-------SSCCGGGGB
T ss_pred             cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCcc-------ccCCCC--ch---hhcC-------cCCChHHhh
Confidence            357999999999999999999998  88999999999765       111000  00   0000       001122234


Q ss_pred             HHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccc
Q 020533           84 IEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC  163 (325)
Q Consensus        84 ~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~  163 (325)
                      ..++.++++++++..  +++++|++++.+.  +.+.+.....  +  +... +.+|+||+|||  +.|..|++||.+.. 
T Consensus        96 ~~~~~~~~~~~gi~v--~~~~~V~~id~~~--~~v~v~~~~~--g--~~~~-~~~d~lviAtG--~~p~~p~i~G~~~~-  163 (588)
T 3ics_A           96 VQTVERMSKRFNLDI--RVLSEVVKINKEE--KTITIKNVTT--N--ETYN-EAYDVLILSPG--AKPIVPSIPGIEEA-  163 (588)
T ss_dssp             SSCHHHHHHHTTCEE--ECSEEEEEEETTT--TEEEEEETTT--C--CEEE-EECSEEEECCC--EEECCCCCTTTTTC-
T ss_pred             ccCHHHHHHhcCcEE--EECCEEEEEECCC--CEEEEeecCC--C--CEEE-EeCCEEEECCC--CCCCCCCCCCcccC-
Confidence            567788888888664  8999999998754  5554443211  1  2247 89999999999  78888999998543 


Q ss_pred             cCCCCCccEEecCCCCCCC-------CCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHH
Q 020533          164 SSATGTGEVIHSTQYKNGK-------PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVY  229 (325)
Q Consensus       164 ~~~~~~g~~~~~~~~~~~~-------~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~  229 (325)
                           .+ +++.....+..       ...+++++|||+|.+|+|+|..+++.|.+|+++.|.+ +++|..+..
T Consensus       164 -----~~-v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~-~~l~~~~~~  229 (588)
T 3ics_A          164 -----KA-LFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENLRERGIEVTLVEMAN-QVMPPIDYE  229 (588)
T ss_dssp             -----TT-EEECSSHHHHHHHHHHHHHHCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSCTTSCHH
T ss_pred             -----CC-eEEeCCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-cccccCCHH
Confidence                 33 44443332211       2357999999999999999999999999999999998 566654333

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=99.87  E-value=3.5e-21  Score=179.68  Aligned_cols=176  Identities=15%  Similarity=0.228  Sum_probs=120.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            8 VEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      +||+|||||++|+++|..|++.  |.+|+|||+++.+|.....     +......               .+....++..
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~-----~~~~~~~---------------~~~~~~~~~~   62 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGG-----LSAYFNH---------------TINELHEARY   62 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC------------------------------------CC
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCcc-----chhhhcC---------------CCCCHHHhhc
Confidence            5999999999999999999998  8999999999987621100     0000000               0000111111


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~  165 (325)
                      +..+.+.++++.  ++++++|++++.+.  ..|.+....      +..+ +.+|++|+|||  +.|..|++||.+.    
T Consensus        63 ~~~~~~~~~gi~--~~~~~~V~~id~~~--~~v~v~~~~------~~~~-~~~d~lviAtG--~~p~~p~i~g~~~----  125 (452)
T 3oc4_A           63 ITEEELRRQKIQ--LLLNREVVAMDVEN--QLIAWTRKE------EQQW-YSYDKLILATG--ASQFSTQIRGSQT----  125 (452)
T ss_dssp             CCHHHHHHTTEE--EECSCEEEEEETTT--TEEEEEETT------EEEE-EECSEEEECCC--CCBCCCCCBTTTC----
T ss_pred             CCHHHHHHCCCE--EEECCEEEEEECCC--CEEEEEecC------ceEE-EEcCEEEECCC--cccCCCCCCCCCC----
Confidence            123334556654  48899999998764  566665211      1267 89999999999  6888899999764    


Q ss_pred             CCCCccEEecCCCCCCCC-----CCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeech
Q 020533          166 ATGTGEVIHSTQYKNGKP-----YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSR  225 (325)
Q Consensus       166 ~~~~g~~~~~~~~~~~~~-----~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~  225 (325)
                          ..++++..+.+...     ..+++++|||+|.+|+|+|..+++.|.+|+++.|.+ .++|+
T Consensus       126 ----~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~  185 (452)
T 3oc4_A          126 ----EKLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLE-NLLPK  185 (452)
T ss_dssp             ----TTEEEGGGCC----CCHHHHTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-SSSTT
T ss_pred             ----CCEEEeCCHHHHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-ccccc
Confidence                24555554443322     257999999999999999999999999999999998 45554

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.87  E-value=5.4e-23  Score=186.71  Aligned_cols=168  Identities=21%  Similarity=0.299  Sum_probs=115.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..||+|||||++|+++|..|++.| +|+|+|+++..+  |.....+       ..   +.         .....+++..+
T Consensus         8 ~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~--~~~~~l~-------~~---~~---------g~~~~~~~~~~   65 (367)
T 1xhc_A            8 GSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPY--YSKPMLS-------HY---IA---------GFIPRNRLFPY   65 (367)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCC--CCSTTHH-------HH---HT---------TSSCGGGGCSS
T ss_pred             CCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCc--cccchhH-------HH---Hh---------CCCCHHHhccC
Confidence            469999999999999999999999 999999988643  1100000       00   00         00111122222


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA  166 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~~  166 (325)
                      ..++++++++.  ++++++|..++...    +.|+ .++       .+ +.||+||+|||  +.|+.|++||.+.     
T Consensus        66 ~~~~~~~~~v~--~~~g~~v~~id~~~----~~V~-~~g-------~~-~~~d~lViATG--s~p~~p~i~G~~~-----  123 (367)
T 1xhc_A           66 SLDWYRKRGIE--IRLAEEAKLIDRGR----KVVI-TEK-------GE-VPYDTLVLATG--ARAREPQIKGKEY-----  123 (367)
T ss_dssp             CHHHHHHHTEE--EECSCCEEEEETTT----TEEE-ESS-------CE-EECSEEEECCC--EEECCCCSBTGGG-----
T ss_pred             CHHHHHhCCcE--EEECCEEEEEECCC----CEEE-ECC-------cE-EECCEEEECCC--CCCCCCCCCCcCC-----
Confidence            33444566654  48888898887543    5666 432       56 89999999999  7888888988322     


Q ss_pred             CCCccEEecCCCCCCCCC-----CCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeec
Q 020533          167 TGTGEVIHSTQYKNGKPY-----GGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLS  224 (325)
Q Consensus       167 ~~~g~~~~~~~~~~~~~~-----~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p  224 (325)
                           +++.....+...+     ++++++|||+|.+|+|+|..|++.|.+|+++.|.+ +++|
T Consensus       124 -----v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~  180 (367)
T 1xhc_A          124 -----LLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGA-MFLG  180 (367)
T ss_dssp             -----EECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSS-CCTT
T ss_pred             -----EEEEcCHHHHHHHHHHhhcCCcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCC-eecc
Confidence                 3443333221111     35899999999999999999999999999999998 5555

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=99.87  E-value=7.5e-22  Score=185.20  Aligned_cols=185  Identities=14%  Similarity=0.198  Sum_probs=109.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI   84 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (325)
                      ++||+|||||++|+++|..|++.  |.+|+|||+++.++  |.....+.   .....        +......++...++.
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~--~~~~gl~~---~~~g~--------~~~~~~~~~~~~~~~   69 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRIS--YGGCGIPY---YVSGE--------VSNIESLQATPYNVV   69 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC---------------------------------------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCccc--ccccccch---hhcCC--------CCchHHhccccchhc
Confidence            36999999999999999999998  89999999998764  11100000   00000        000000111122355


Q ss_pred             HHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCcccccc
Q 020533           85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS  164 (325)
Q Consensus        85 ~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~  164 (325)
                      .++..+++++++.  ++++++|++++.+.  ..+.+....  .+  +... +.+|+||+|||  +.|..|++||.+.   
T Consensus        70 ~~~~~~~~~~gi~--~~~~~~V~~id~~~--~~v~~~~~~--~g--~~~~-~~~d~lviAtG--~~p~~p~i~G~~~---  135 (472)
T 3iwa_A           70 RDPEFFRINKDVE--ALVETRAHAIDRAA--HTVEIENLR--TG--ERRT-LKYDKLVLALG--SKANRPPVEGMDL---  135 (472)
T ss_dssp             -----------CE--EECSEEEEEEETTT--TEEEEEETT--TC--CEEE-EECSEEEECCC--EEECCCSCTTTTS---
T ss_pred             cCHHHHhhhcCcE--EEECCEEEEEECCC--CEEEEeecC--CC--CEEE-EECCEEEEeCC--CCcCCCCCCCCCC---
Confidence            6667777667755  48999999998754  455444311  11  2257 89999999999  6888889998862   


Q ss_pred             CCCCCccEEecCCCCCC-------CCCCCCeEEEECcCCCHHHHHHHHhhc-cCeEEEEEecCCeeec
Q 020533          165 SATGTGEVIHSTQYKNG-------KPYGGKNVLVVGSGNSGMEIALDLANH-AAKTSLVVRSPVHVLS  224 (325)
Q Consensus       165 ~~~~~g~~~~~~~~~~~-------~~~~~~~v~VvG~G~s~~e~a~~l~~~-~~~v~~~~r~~~~~~p  224 (325)
                          .+ +++.....+.       ....+++++|||+|.+|+|+|..+.+. |.+|+++.|.+ .++|
T Consensus       136 ----~~-v~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~-~~l~  197 (472)
T 3iwa_A          136 ----AG-VTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELAD-QIMP  197 (472)
T ss_dssp             ----BT-EEECCSHHHHHHHHHHCCTTSCSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSS-SSST
T ss_pred             ----CC-EEEeCCHHHHHHHHHHhhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccC-cccc
Confidence                22 3333222111       113478999999999999999999999 99999999998 4555

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=99.86  E-value=2.5e-22  Score=185.46  Aligned_cols=170  Identities=21%  Similarity=0.241  Sum_probs=116.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCC--eEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIP--YVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF   83 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~--v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (325)
                      .++||+|||||++|+++|..|+++|++  |+|+|+++..+..       ..  ..++.+.  .         ......++
T Consensus         8 ~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~-------~~--~l~~~~~--~---------~~~~~~~~   67 (415)
T 3lxd_A            8 ERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYE-------RP--PLSKEYL--A---------REKTFERI   67 (415)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBC-------SG--GGGTTTT--T---------TSSCSGGG
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcC-------cc--cCCHHHH--c---------CCCCHHHh
Confidence            457999999999999999999999987  9999999865411       00  0000000  0         00011122


Q ss_pred             HHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccc
Q 020533           84 IEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC  163 (325)
Q Consensus        84 ~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~  163 (325)
                      ..+..++.++.++.  ++++++|..++...    +.|.+.++       .. +.+|+||+|||  +.|+.|++||.+.. 
T Consensus        68 ~~~~~~~~~~~~i~--~~~~~~v~~id~~~----~~v~~~~g-------~~-~~~d~lvlAtG--~~~~~~~i~g~~~~-  130 (415)
T 3lxd_A           68 CIRPAQFWEDKAVE--MKLGAEVVSLDPAA----HTVKLGDG-------SA-IEYGKLIWATG--GDPRRLSCVGADLA-  130 (415)
T ss_dssp             BSSCHHHHHHTTEE--EEETCCEEEEETTT----TEEEETTS-------CE-EEEEEEEECCC--EECCCCBTTSSCCB-
T ss_pred             ccCCHHHHHHCCcE--EEeCCEEEEEECCC----CEEEECCC-------CE-EEeeEEEEccC--CccCCCCCCCcccc-
Confidence            22233445556654  48888999987643    56776654       56 89999999999  77888888887532 


Q ss_pred             cCCCCCccEEecCCCCCC-----CCCC-CCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          164 SSATGTGEVIHSTQYKNG-----KPYG-GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       164 ~~~~~~g~~~~~~~~~~~-----~~~~-~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                            + +++.....+.     .... +++++|||+|.+|+|+|..+.+.|.+|+++.+.+
T Consensus       131 ------~-v~~~~~~~d~~~l~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~  185 (415)
T 3lxd_A          131 ------G-VHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALP  185 (415)
T ss_dssp             ------T-EECCCSHHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             ------C-EEEEcCHHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCC
Confidence                  2 2221111110     1113 7999999999999999999999999999999998

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=99.86  E-value=1.8e-21  Score=179.24  Aligned_cols=175  Identities=23%  Similarity=0.276  Sum_probs=115.3

Q ss_pred             CCCCCCCCeEEEECCChHHHHHHHHHHhcCC--CeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCC
Q 020533            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSI--PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFV   78 (325)
Q Consensus         1 M~~~~~~~~v~IIGaG~~Gl~~a~~L~~~g~--~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (325)
                      |+.+..++||+|||||++|+++|..|++.|.  +|+|+|+++.++       |...  ..++.+..-.   .++.  .  
T Consensus         1 M~~~~~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~-------~~~~--~~~~~~~~~~---~~~~--~--   64 (408)
T 2gqw_A            1 MSQEALKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERP-------YDRP--PLSKDFMAHG---DAEK--I--   64 (408)
T ss_dssp             -----CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCC-------BCSG--GGGTHHHHHC---CGGG--S--
T ss_pred             CCCCCCCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCc-------ccCC--CCCHHHhCCC---chhh--h--
Confidence            6665667899999999999999999999998  599999988643       1100  0000000000   0000  0  


Q ss_pred             CHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCC-C
Q 020533           79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDI-R  157 (325)
Q Consensus        79 ~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~-~  157 (325)
                             ++. .++++++  .++++++|+.++.+.    ++|++.++       .+ +.+|+||+|||  +.|..|++ |
T Consensus        65 -------~~~-~~~~~~v--~~~~~~~v~~i~~~~----~~v~~~~g-------~~-~~~d~lviAtG--~~~~~~~i~~  120 (408)
T 2gqw_A           65 -------RLD-CKRAPEV--EWLLGVTAQSFDPQA----HTVALSDG-------RT-LPYGTLVLATG--AAPRALPTLQ  120 (408)
T ss_dssp             -------BCC-CTTSCSC--EEEETCCEEEEETTT----TEEEETTS-------CE-EECSEEEECCC--EEECCCGGGT
T ss_pred             -------hHH-HHHHCCC--EEEcCCEEEEEECCC----CEEEECCC-------CE-EECCEEEECCC--CCCCCCCccC
Confidence                   001 2233454  458888899887643    66777653       46 89999999999  67888888 8


Q ss_pred             CccccccCCCCCccEEecCCCCC-----CCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeech
Q 020533          158 GLCSFCSSATGTGEVIHSTQYKN-----GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSR  225 (325)
Q Consensus       158 g~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~  225 (325)
                      |.+ -        .+++.....+     .....+++|+|||+|.+|+|+|..|++.|.+|+++.|.+ .++|+
T Consensus       121 G~~-~--------~v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~  183 (408)
T 2gqw_A          121 GAT-M--------PVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQP-RLMSR  183 (408)
T ss_dssp             TCS-S--------CEEECCSHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-SSSTT
T ss_pred             CCC-C--------cEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCC-ccccc
Confidence            865 1        1333222211     112347999999999999999999999999999999998 45553

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.86  E-value=1.3e-21  Score=184.78  Aligned_cols=194  Identities=18%  Similarity=0.251  Sum_probs=114.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC-CCCceEeec----CCCccCCCCCCCCCCCCCCCCHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY-SYDRLRLHL----AKQFCQLPHLPFPSSYPMFVSRA   81 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~-~y~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~   81 (325)
                      ++||+|||||++|+++|..|++.|.+|+|||+++ +||+|... +.+...+..    .........+.+...  ......
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~-~GG~c~~~gc~P~k~l~~~a~~~~~~~~~~~~g~~~~--~~~~~~   78 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKSR-LGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTK--FSFNLP   78 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCC--CCCCHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC-cCccccccCCcchHHHHHHHHHHHHHHhhHhcCCccC--CccCHH
Confidence            3799999999999999999999999999999984 89988642 111100000    000000000111100  111222


Q ss_pred             HHH-----------HHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEee--------cCCCCceeEEEEEeCeEE
Q 020533           82 QFI-----------EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASN--------LLSPGREIEEYYSGRFLV  142 (325)
Q Consensus        82 ~~~-----------~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~--------~~~~~~~~~~~~~ad~vI  142 (325)
                      ++.           .++.+.+++.++..  +.++. ..++    ...+.+....        ...+    .+ +.||+||
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~--~~g~~-~~id----~~~v~v~~~~~~~~~~~~~~~~----~~-~~~d~lV  146 (500)
T 1onf_A           79 LLVERRDKYIQRLNNIYRQNLSKDKVDL--YEGTA-SFLS----ENRILIKGTKDNNNKDNGPLNE----EI-LEGRNIL  146 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEE--EESCC-CCC-----------------------------------CBSSEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEeEE-EEee----CCEEEEEeccccccccccCCCc----eE-EEeCEEE
Confidence            222           23334445556543  55432 2221    1233333200        0001    56 8999999


Q ss_pred             EcccCCCCCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCee
Q 020533          143 VASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHV  222 (325)
Q Consensus       143 iAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~  222 (325)
                      +|||  +.|..|++||.+.          ++++.++.....  +++++|||+|.+|+|+|..|++.|.+|+++.|.+ .+
T Consensus       147 iAtG--s~p~~p~i~G~~~----------~~~~~~~~~~~~--~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~~  211 (500)
T 1onf_A          147 IAVG--NKPVFPPVKGIEN----------TISSDEFFNIKE--SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGN-RI  211 (500)
T ss_dssp             ECCC--CCBCCCSCTTGGG----------CEEHHHHTTCCC--CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSS-SS
T ss_pred             ECCC--CCCCCCCCCCCCc----------ccCHHHHhccCC--CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCC-cc
Confidence            9999  7788888988743          355555544333  8999999999999999999999999999999998 56


Q ss_pred             echhhHHH
Q 020533          223 LSREMVYL  230 (325)
Q Consensus       223 ~p~~~~~~  230 (325)
                      +|..+..+
T Consensus       212 l~~~d~~~  219 (500)
T 1onf_A          212 LRKFDESV  219 (500)
T ss_dssp             CTTSCHHH
T ss_pred             Ccccchhh
Confidence            66544433

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=99.86  E-value=3.6e-22  Score=191.44  Aligned_cols=184  Identities=17%  Similarity=0.220  Sum_probs=127.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            8 VEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      ++|+|||||++|+++|..|++.  +.+|+|||+++..+       |..+.+  +   +.+..       ........+.+
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~-------~~~~~l--~---~~~~~-------~~~~~~~~~~~   62 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVS-------FANCGL--P---YHISG-------EIAQRSALVLQ   62 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSS-------BCGGGH--H---HHHTS-------SSCCGGGGBCC
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCcc-------ccccCc--h---HHhcC-------CcCChHHhhcc
Confidence            5899999999999999999998  78999999998765       111000  0   00000       00112233445


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~  165 (325)
                      ++..+++++++..  +++++|++++.+.  +.+.+.....  +  +..+ +.||+||+|||  +.|..|++||.+..   
T Consensus        63 ~~~~~~~~~~i~~--~~~~~V~~id~~~--~~v~~~~~~~--g--~~~~-~~~d~lviAtG--~~p~~p~ipG~~~~---  128 (565)
T 3ntd_A           63 TPESFKARFNVEV--RVKHEVVAIDRAA--KLVTVRRLLD--G--SEYQ-ESYDTLLLSPG--AAPIVPPIPGVDNP---  128 (565)
T ss_dssp             CHHHHHHHHCCEE--ETTEEEEEEETTT--TEEEEEETTT--C--CEEE-EECSEEEECCC--EEECCCCCTTCCST---
T ss_pred             CHHHHHHhcCcEE--EECCEEEEEECCC--CEEEEEecCC--C--CeEE-EECCEEEECCC--CCCCCCCCCCCCCC---
Confidence            6677777788654  8999999998754  5554443211  1  2257 89999999999  68888999998643   


Q ss_pred             CCCCccEEecCCCCCC-------CCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHHH
Q 020533          166 ATGTGEVIHSTQYKNG-------KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYL  230 (325)
Q Consensus       166 ~~~~g~~~~~~~~~~~-------~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~~  230 (325)
                           .+++.....+.       ....+++|+|||+|.+|+|+|..+++.|.+|+++.|++ .++|..+..+
T Consensus       129 -----~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~-~~l~~~~~~~  194 (565)
T 3ntd_A          129 -----LTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLLELAD-QVMTPVDREM  194 (565)
T ss_dssp             -----TEECCSSHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-SSCTTSCHHH
T ss_pred             -----CEEEeCCHHHHHHHHHHHhhCCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCC-ccchhcCHHH
Confidence                 23333322111       11357899999999999999999999999999999998 6666544443

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.86  E-value=3.5e-21  Score=180.59  Aligned_cols=201  Identities=10%  Similarity=0.118  Sum_probs=128.8

Q ss_pred             CCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCC-CCceEeecCC----C----c--cCCCCCCCCCC
Q 020533            5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYS-YDRLRLHLAK----Q----F--CQLPHLPFPSS   73 (325)
Q Consensus         5 ~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~-y~~~~~~~~~----~----~--~~~~~~~~~~~   73 (325)
                      ..++||+|||||++|+++|..|++.|++|+|||+++.+||+|.... .+...+....    .    .  +.++......+
T Consensus         4 ~~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~   83 (470)
T 1dxl_A            4 SDENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEID   83 (470)
T ss_dssp             CCCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEEC
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccCCCccC
Confidence            3468999999999999999999999999999999999999885321 1100000000    0    0  00000000000


Q ss_pred             CCCCC-CH----HHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCC
Q 020533           74 YPMFV-SR----AQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET  148 (325)
Q Consensus        74 ~~~~~-~~----~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~  148 (325)
                      +..+. ..    ..+.+++.+.+++.++.  +++++.+. +  +.  +.|.|.+.++.     ... +.+|+||+|||  
T Consensus        84 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~--~~~g~~~~-~--~~--~~~~v~~~~G~-----~~~-i~~d~lIiAtG--  148 (470)
T 1dxl_A           84 LAAMMGQKDKAVSNLTRGIEGLFKKNKVT--YVKGYGKF-V--SP--SEISVDTIEGE-----NTV-VKGKHIIIATG--  148 (470)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCE--EEESCEEE-E--ET--TEEEECCSSSC-----CEE-EECSEEEECCC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEeEEEE-e--cC--CEEEEEeCCCc-----eEE-EEcCEEEECCC--
Confidence            00000 01    12333345566666754  47777553 3  22  45777654331     156 89999999999  


Q ss_pred             CCCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhH
Q 020533          149 TNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV  228 (325)
Q Consensus       149 ~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~  228 (325)
                      +.|..|+++|.+..        .++++.+..... ..+++++|||+|.+|+|+|..|++.|.+|+++.|++ .++|..+.
T Consensus       149 s~p~~p~~~g~~~~--------~v~~~~~~~~~~-~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~~~  218 (470)
T 1dxl_A          149 SDVKSLPGVTIDEK--------KIVSSTGALALS-EIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFAS-EIVPTMDA  218 (470)
T ss_dssp             EEECCBTTBCCCSS--------SEECHHHHTTCS-SCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSS-SSSTTSCH
T ss_pred             CCCCCCCCCCCCcc--------cEEeHHHhhhhh-hcCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC-cccccccH
Confidence            67888888886531        356655444322 257999999999999999999999999999999998 56665444


Q ss_pred             HH
Q 020533          229 YL  230 (325)
Q Consensus       229 ~~  230 (325)
                      .+
T Consensus       219 ~~  220 (470)
T 1dxl_A          219 EI  220 (470)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=99.85  E-value=3.7e-22  Score=188.20  Aligned_cols=198  Identities=17%  Similarity=0.181  Sum_probs=121.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC-CCCceEeecCCCcc-----CCCCCCCCCCCCCCCCH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY-SYDRLRLHLAKQFC-----QLPHLPFPSSYPMFVSR   80 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~-~y~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~   80 (325)
                      ++||+|||||++|+++|..|++.|++|+|||+++.+||+|... +++...+..+...+     .+..+..... ......
T Consensus        25 ~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~-~~~~~~  103 (491)
T 3urh_A           25 AYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVA-NPKLNL  103 (491)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECC-CCEECH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccC-CCccCH
Confidence            4899999999999999999999999999999999999987642 12211110000000     0111111000 001122


Q ss_pred             HHHHHH-----------HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533           81 AQFIEH-----------LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (325)
Q Consensus        81 ~~~~~y-----------l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~  149 (325)
                      ..+.++           +....+..++..  ..+. ...+    +.+.+.|...++     +..+ +.+|+||+|||  +
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~g~-~~~~----~~~~~~v~~~~g-----~~~~-~~~d~lViATG--s  168 (491)
T 3urh_A          104 QKMMAHKDATVKSNVDGVSFLFKKNKIDG--FQGT-GKVL----GQGKVSVTNEKG-----EEQV-LEAKNVVIATG--S  168 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEE--EESE-EEEC----SSSEEEEECTTS-----CEEE-EECSEEEECCC--E
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEEE-EEEe----cCCEEEEEeCCC-----ceEE-EEeCEEEEccC--C
Confidence            222222           233344445432  3333 2222    234555654332     2257 89999999999  4


Q ss_pred             CCCCCCCCCccc-cccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhH
Q 020533          150 NPFTPDIRGLCS-FCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV  228 (325)
Q Consensus       150 ~p~~p~~~g~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~  228 (325)
                      .|  |.+||.+. +      .+..+++..........+++++|||+|.+|+|+|..+++.|.+|+++.+.+ .++|..+.
T Consensus       169 ~p--~~ipg~~~~~------~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~~d~  239 (491)
T 3urh_A          169 DV--AGIPGVEVAF------DEKTIVSSTGALALEKVPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLD-TILGGMDG  239 (491)
T ss_dssp             EC--CCBTTBCCCC------CSSSEECHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSS-SSSSSSCH
T ss_pred             CC--CCCCCccccc------CCeeEEehhHhhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeccc-cccccCCH
Confidence            44  45777753 3      444455444433445568999999999999999999999999999999998 56665443


Q ss_pred             H
Q 020533          229 Y  229 (325)
Q Consensus       229 ~  229 (325)
                      +
T Consensus       240 ~  240 (491)
T 3urh_A          240 E  240 (491)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=99.85  E-value=2e-22  Score=185.71  Aligned_cols=171  Identities=18%  Similarity=0.217  Sum_probs=116.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCC--eEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIP--YVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~--v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      ++|+|||||++|+++|..|+++|++  |+|||+++..+.       ....  .++.+...  ...++..  +        
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y-------~~~~--l~~~~~~g--~~~~~~~--~--------   61 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPY-------DRPS--LSKAVLDG--SLERPPI--L--------   61 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSB-------CSGG--GGTHHHHT--SSSSCCB--S--------
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCc-------CCcc--ccHHHhCC--CCCHHHh--c--------
Confidence            4899999999999999999999987  999999987541       1000  00000000  0000000  0        


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~  165 (325)
                      +..++.++.++.  ++++++|+.++...    +.|.+.++       .+ +.+|+||+|||  +.|+.|++||.+.    
T Consensus        62 ~~~~~~~~~~i~--~~~~~~v~~id~~~----~~v~~~~g-------~~-~~~d~lvlAtG--~~p~~~~ipG~~~----  121 (410)
T 3ef6_A           62 AEADWYGEARID--MLTGPEVTALDVQT----RTISLDDG-------TT-LSADAIVIATG--SRARTMALPGSQL----  121 (410)
T ss_dssp             SCTTHHHHTTCE--EEESCCEEEEETTT----TEEEETTS-------CE-EECSEEEECCC--EEECCCCCTTTTS----
T ss_pred             CCHHHHHHCCCE--EEeCCEEEEEECCC----CEEEECCC-------CE-EECCEEEEccC--CcccCCCCCCccc----
Confidence            011223445654  48999999997653    46776654       56 89999999999  6788888998752    


Q ss_pred             CCCCccEEecCCCCCC-----CCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeec
Q 020533          166 ATGTGEVIHSTQYKNG-----KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLS  224 (325)
Q Consensus       166 ~~~~g~~~~~~~~~~~-----~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p  224 (325)
                          ..+++.....+.     ....+++++|||+|.+|+|+|..+.+.|.+|+++.|.+ .++|
T Consensus       122 ----~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~-~~l~  180 (410)
T 3ef6_A          122 ----PGVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSVTILEAGD-ELLV  180 (410)
T ss_dssp             ----TTEECCCSHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSSH
T ss_pred             ----cceEEeccHHHHHHHHHHhccCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-ccch
Confidence                223332222111     12358999999999999999999999999999999998 3444

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=99.85  E-value=4.6e-21  Score=178.68  Aligned_cols=174  Identities=20%  Similarity=0.323  Sum_probs=116.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI   84 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (325)
                      ++||+|||||++|+++|..|++.  +.+|+|||+++.+++...         ..+.            .........++.
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~---------~~p~------------~~~~~~~~~~~~   61 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPC---------GIPY------------VVEGLSTPDKLM   61 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC-----------------------------------------
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCc---------CCcc------------ccCCCCCHHHhh
Confidence            46999999999999999999998  789999999987652210         0000            001111222333


Q ss_pred             HHH-HHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccc
Q 020533           85 EHL-DHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC  163 (325)
Q Consensus        85 ~yl-~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~  163 (325)
                      .+. ..+++++++.  ++++++|++++.+    .+.|...++      ..+ +.+|+||+|||  +.|..|++||.+.  
T Consensus        62 ~~~~~~~~~~~gi~--v~~~~~v~~i~~~----~~~v~~~~g------~~~-~~~d~lviAtG--~~p~~p~i~G~~~--  124 (449)
T 3kd9_A           62 YYPPEVFIKKRGID--LHLNAEVIEVDTG----YVRVRENGG------EKS-YEWDYLVFANG--ASPQVPAIEGVNL--  124 (449)
T ss_dssp             ----CTHHHHTTCE--EETTCEEEEECSS----EEEEECSSS------EEE-EECSEEEECCC--EEECCCSCBTTTS--
T ss_pred             hcCHHHHHHhcCcE--EEecCEEEEEecC----CCEEEECCc------eEE-EEcCEEEECCC--CCCCCCCCCCCCC--
Confidence            333 3344677765  4899999988643    367765432      147 89999999999  7788889998754  


Q ss_pred             cCCCCCccEEecCCCCC-------CCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeech
Q 020533          164 SSATGTGEVIHSTQYKN-------GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSR  225 (325)
Q Consensus       164 ~~~~~~g~~~~~~~~~~-------~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~  225 (325)
                           .+ ++......+       ...+.+++++|||+|.+|+|+|..+++.|.+|+++.|.+ .++|+
T Consensus       125 -----~~-v~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~  186 (449)
T 3kd9_A          125 -----KG-VFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGE-RVLRR  186 (449)
T ss_dssp             -----TT-EECSCSTHHHHHHHHHHSSSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-STTTT
T ss_pred             -----CC-EEEeCCHHHHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCC-ccchh
Confidence                 12 232221111       123468999999999999999999999999999999998 45554

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=99.85  E-value=8.1e-23  Score=186.56  Aligned_cols=172  Identities=17%  Similarity=0.214  Sum_probs=122.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      .+.+|+|||||++|+++|..|...+.+|+|||+++..+       |....  .+..+            ....+.+++..
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~-------y~~~~--l~~~l------------~g~~~~~~l~~   66 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLP-------YYRPR--LNEII------------AKNKSIDDILI   66 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCC-------BCGGG--HHHHH------------HSCCCGGGTBS
T ss_pred             CCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCC-------cccCh--hhHHH------------cCCCCHHHccC
Confidence            45789999999999999999977889999999998755       21110  00000            00111122333


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~  165 (325)
                      +..++++++++.  ++++++|++++.+.    .+|++.++       .+ +.||+||+|||  +.|+.|++||.+.    
T Consensus        67 ~~~~~~~~~~i~--~~~~~~V~~id~~~----~~v~~~~g-------~~-~~yd~lvlAtG--~~p~~p~i~G~~~----  126 (385)
T 3klj_A           67 KKNDWYEKNNIK--VITSEFATSIDPNN----KLVTLKSG-------EK-IKYEKLIIASG--SIANKIKVPHADE----  126 (385)
T ss_dssp             SCHHHHHHTTCE--EECSCCEEEEETTT----TEEEETTS-------CE-EECSEEEECCC--EEECCCCCTTCSC----
T ss_pred             CCHHHHHHCCCE--EEeCCEEEEEECCC----CEEEECCC-------CE-EECCEEEEecC--CCcCCCCCCCCCC----
Confidence            344555667755  48999999998754    35666654       56 89999999999  7888888888642    


Q ss_pred             CCCCccEEecCCCCCCCCC-----CCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeech
Q 020533          166 ATGTGEVIHSTQYKNGKPY-----GGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSR  225 (325)
Q Consensus       166 ~~~~g~~~~~~~~~~~~~~-----~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~  225 (325)
                            +++...+.+...+     .+++|+|||+|.+|+|+|..|++.|.+||++.|++ +++|+
T Consensus       127 ------v~~~~~~~d~~~l~~~l~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~-~~l~~  184 (385)
T 3klj_A          127 ------IFSLYSYDDALKIKDECKNKGKAFIIGGGILGIELAQAIIDSGTPASIGIILE-YPLER  184 (385)
T ss_dssp             ------EECCSSHHHHHHHHHHHHHHSCEEEECCSHHHHHHHHHHHHHTCCEEEECSSS-SSCTT
T ss_pred             ------eEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCC-ccchh
Confidence                  3333333221112     27899999999999999999999999999999999 66665

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=99.85  E-value=4.5e-21  Score=180.75  Aligned_cols=200  Identities=16%  Similarity=0.159  Sum_probs=123.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHh-cCCCeEEEe--------cCCCCCCccCCC-CCCceEeecCCC----ccCCCCCCCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSL-QSIPYVILE--------RENCYASIWKKY-SYDRLRLHLAKQ----FCQLPHLPFPS   72 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~-~g~~v~v~e--------~~~~~Gg~w~~~-~y~~~~~~~~~~----~~~~~~~~~~~   72 (325)
                      ++||+|||||++|+++|..|++ .|.+|+|||        +.+.+||+|... ++|...+.....    ......+.+..
T Consensus         7 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~   86 (495)
T 2wpf_A            7 AFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDHLRESAGFGWEF   86 (495)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTTEEC
T ss_pred             ccCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCeeecCCcchHHHHHHHHHHHHHHhHHHhcCccc
Confidence            5799999999999999999999 999999999        356789988642 122110000000    00001111100


Q ss_pred             CCC-CCCCHHHHHHHHHHHH-----------HHc-CCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCC-CceeEEEEEe
Q 020533           73 SYP-MFVSRAQFIEHLDHYV-----------SHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSP-GREIEEYYSG  138 (325)
Q Consensus        73 ~~~-~~~~~~~~~~yl~~~a-----------~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~-~~~~~~~~~a  138 (325)
                      ... ......++.++..++.           ++. ++.  ++.++ +..++  .    ++|.+.+.... ...... +.|
T Consensus        87 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~--~~~g~-~~~i~--~----~~v~v~~~~~~~~~~~~~-~~~  156 (495)
T 2wpf_A           87 DGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLD--FFLGW-GSLES--K----NVVVVRETADPKSAVKER-LQA  156 (495)
T ss_dssp             CGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEE--EEESE-EEEEE--T----TEEEEESSSSTTSCEEEE-EEE
T ss_pred             CCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeE--EEEeE-EEEee--C----CEEEEeecCCccCCCCeE-EEc
Confidence            000 0123345555444333           333 433  24443 44442  1    45666521110 000157 899


Q ss_pred             CeEEEcccCCCCCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhc---cCeEEEE
Q 020533          139 RFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANH---AAKTSLV  215 (325)
Q Consensus       139 d~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~---~~~v~~~  215 (325)
                      |+||+|||  +.|..|++||.+.          ++++.++... ...+++++|||+|.+|+|+|..|++.   |.+|+++
T Consensus       157 d~lViATG--s~p~~p~i~G~~~----------~~~~~~~~~~-~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv  223 (495)
T 2wpf_A          157 DHILLATG--SWPQMPAIPGIEH----------CISSNEAFYL-PEPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLC  223 (495)
T ss_dssp             EEEEECCC--EEECCCCCTTGGG----------CEEHHHHTTC-SSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             CEEEEeCC--CCcCCCCCCCccc----------cccHHHHHhh-hhcCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEE
Confidence            99999999  7788888988743          2444444332 23478999999999999999999999   9999999


Q ss_pred             EecCCeeechhhHHH
Q 020533          216 VRSPVHVLSREMVYL  230 (325)
Q Consensus       216 ~r~~~~~~p~~~~~~  230 (325)
                      .|.+ .++|..+.++
T Consensus       224 ~~~~-~~l~~~d~~~  237 (495)
T 2wpf_A          224 YRNN-LILRGFDETI  237 (495)
T ss_dssp             ESSS-SSCTTSCHHH
T ss_pred             EcCC-ccccccCHHH
Confidence            9998 5666544433

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=99.85  E-value=4.5e-21  Score=180.01  Aligned_cols=193  Identities=13%  Similarity=0.107  Sum_probs=125.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCC-CCceEeecCCC----cc--CCCCCCCCCCCCCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYS-YDRLRLHLAKQ----FC--QLPHLPFPSSYPMFV   78 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~-y~~~~~~~~~~----~~--~~~~~~~~~~~~~~~   78 (325)
                      .++||+|||||++|+++|..|++.|++|+|||+++.+||+|.... .+...+.....    +.  .+..+.++.. ....
T Consensus         5 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~-~~~~   83 (474)
T 1zmd_A            5 IDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMS-EVRL   83 (474)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEES-CEEE
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccC-CCcc
Confidence            357999999999999999999999999999999999999885421 11100000000    00  0000000000 0011


Q ss_pred             CHHHHHH-----------HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533           79 SRAQFIE-----------HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        79 ~~~~~~~-----------yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                      +..++..           .+.+.+++.++..  +.++. ..+  +  .+.|.|.+.++.    . .+ +.||+||+||| 
T Consensus        84 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~--~~g~~-~~~--~--~~~~~v~~~~gg----~-~~-~~~d~lViAtG-  149 (474)
T 1zmd_A           84 NLDKMMEQKSTAVKALTGGIAHLFKQNKVVH--VNGYG-KIT--G--KNQVTATKADGG----T-QV-IDTKNILIATG-  149 (474)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEE--EESEE-EEE--E--TTEEEEECTTSC----E-EE-EEEEEEEECCC-
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEEEE-EEe--c--CCEEEEEecCCC----c-EE-EEeCEEEECCC-
Confidence            2223322           2345556666543  66654 333  2  255777654311    1 56 89999999999 


Q ss_pred             CCCCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeec
Q 020533          148 TTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLS  224 (325)
Q Consensus       148 ~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p  224 (325)
                       +.|..|+++|.+..        .++++.+...... .+++++|||+|.+|+|+|..+++.|.+|+++.|++ .++|
T Consensus       150 -s~p~~p~i~g~~~~--------~v~t~~~~~~~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~  215 (474)
T 1zmd_A          150 -SEVTPFPGITIDED--------TIVSSTGALSLKK-VPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLG-HVGG  215 (474)
T ss_dssp             -EEECCCTTCCCCSS--------SEECHHHHTTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSSC
T ss_pred             -CCCCCCCCCCCCcC--------cEEcHHHHhhccc-cCceEEEECCCHHHHHHHHHHHHcCCEEEEEeccC-ccCC
Confidence             67888888887532        3566665544322 46999999999999999999999999999999998 5666

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=99.85  E-value=3.5e-21  Score=180.89  Aligned_cols=202  Identities=17%  Similarity=0.244  Sum_probs=121.3

Q ss_pred             CCCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC-CCCceEeecC----CCccCCCCCCCCCC--
Q 020533            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY-SYDRLRLHLA----KQFCQLPHLPFPSS--   73 (325)
Q Consensus         1 M~~~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~-~y~~~~~~~~----~~~~~~~~~~~~~~--   73 (325)
                      |+.+..++||+|||||++|+++|..|++.|.+|+|||++ .+||+|... +.+...+...    ........+.+...  
T Consensus         5 m~~~~~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~   83 (479)
T 2hqm_A            5 MSTNTKHYDYLVIGGGSGGVASARRAASYGAKTLLVEAK-ALGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLP   83 (479)
T ss_dssp             -----CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTBSTTSC
T ss_pred             ccCccccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCC-CcCCcCcccCcHHHHHHHHHHHHHHHHHhHHhcCcccccc
Confidence            444445689999999999999999999999999999998 689988632 1111000000    00000011111000  


Q ss_pred             --C-CCCCCHHHHHHH-----------HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeC
Q 020533           74 --Y-PMFVSRAQFIEH-----------LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGR  139 (325)
Q Consensus        74 --~-~~~~~~~~~~~y-----------l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad  139 (325)
                        . .......++.++           +...++..++.  +..+ ++..+  +  ...+.|...++     +..+ +.+|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g-~~~~i--~--~~~~~v~~~~g-----~~~~-~~~d  150 (479)
T 2hqm_A           84 LDKEHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVD--VVFG-WARFN--K--DGNVEVQKRDN-----TTEV-YSAN  150 (479)
T ss_dssp             CSGGGCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEE--EEEE-EEEEC--T--TSCEEEEESSS-----CCEE-EEEE
T ss_pred             cccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEe-EEEEe--e--CCEEEEEeCCC-----cEEE-EEeC
Confidence              0 011223333332           23334444543  2443 34433  2  24566665443     1147 8999


Q ss_pred             eEEEcccCCCCCCCC-CCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEec
Q 020533          140 FLVVASGETTNPFTP-DIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRS  218 (325)
Q Consensus       140 ~vIiAtG~~~~p~~p-~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~  218 (325)
                      +||+|||  +.|..| ++||.+..          +++.++.. ....+++++|||+|.+|+|+|..+++.|.+|+++.|.
T Consensus       151 ~lviAtG--s~p~~p~~i~g~~~~----------~~~~~~~~-l~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~  217 (479)
T 2hqm_A          151 HILVATG--GKAIFPENIPGFELG----------TDSDGFFR-LEEQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRG  217 (479)
T ss_dssp             EEEECCC--EEECCCTTSTTGGGS----------BCHHHHHH-CSSCCSEEEEECSSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             EEEEcCC--CCCCCCCCCCCcccc----------cchHHHhc-ccccCCeEEEECCCHHHHHHHHHHHHcCCceEEEEeC
Confidence            9999999  778888 88887432          22222221 1234789999999999999999999999999999999


Q ss_pred             CCeeechhhHHH
Q 020533          219 PVHVLSREMVYL  230 (325)
Q Consensus       219 ~~~~~p~~~~~~  230 (325)
                      + .++|..+..+
T Consensus       218 ~-~~l~~~d~~~  228 (479)
T 2hqm_A          218 E-TVLRKFDECI  228 (479)
T ss_dssp             S-SSCTTSCHHH
T ss_pred             C-ccccccCHHH
Confidence            8 5666544433

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=99.85  E-value=1e-20  Score=177.25  Aligned_cols=198  Identities=14%  Similarity=0.129  Sum_probs=125.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC-CCCceEeecCCC----ccC-CCCCCCCCCCCCCCCH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY-SYDRLRLHLAKQ----FCQ-LPHLPFPSSYPMFVSR   80 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~-~y~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~   80 (325)
                      ++||+|||||++|+++|..|++.|++|+|||+++.+||+|... +.+...+.....    +.. +..+..+.........
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   81 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGVTMDS   81 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCEECH
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCccCH
Confidence            4799999999999999999999999999999999999988632 111100000000    000 0000000000001112


Q ss_pred             HHH-----------HHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533           81 AQF-----------IEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (325)
Q Consensus        81 ~~~-----------~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~  149 (325)
                      .++           ...+.+.+++.++..  +.++.+ .++  .  +.+.|...++     +..+ +.+|+||+|||  +
T Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~v~~--~~g~~~-~i~--~--~~~~v~~~~G-----~~~~-~~~d~lviAtG--~  146 (468)
T 2qae_A           82 AKMQQQKERAVKGLTGGVEYLFKKNKVTY--YKGEGS-FET--A--HSIRVNGLDG-----KQEM-LETKKTIIATG--S  146 (468)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCEE--EEEEEE-EEE--T--TEEEEEETTS-----CEEE-EEEEEEEECCC--E
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEEEEE-Eee--C--CEEEEEecCC-----ceEE-EEcCEEEECCC--C
Confidence            222           223345556666543  665543 332  2  4566665433     1256 89999999999  6


Q ss_pred             CCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHH
Q 020533          150 NPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVY  229 (325)
Q Consensus       150 ~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~  229 (325)
                      .|..|+++|.+.       . .++++.+.... ...+++++|||+|.+|+|+|..+.+.|.+|+++.|.+ .++|..+..
T Consensus       147 ~p~~p~~~g~~~-------~-~v~t~~~~~~~-~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~~d~~  216 (468)
T 2qae_A          147 EPTELPFLPFDE-------K-VVLSSTGALAL-PRVPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAP-RCAPTLDED  216 (468)
T ss_dssp             EECCBTTBCCCS-------S-SEECHHHHHTC-SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSSTTSCHH
T ss_pred             CcCCCCCCCCCc-------C-ceechHHHhhc-ccCCceEEEECCCHHHHHHHHHHHHhCCEEEEEecCC-cccccCCHH
Confidence            788888888653       1 35555544332 2257999999999999999999999999999999998 566654433

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=99.84  E-value=5e-21  Score=174.90  Aligned_cols=172  Identities=17%  Similarity=0.242  Sum_probs=121.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC--CeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI--PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI   84 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~--~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (325)
                      ++||+|||||++|+++|..|++.|.  +|+++|+++  |..|....++           .        .........++.
T Consensus         4 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~--g~~~~~~~l~-----------~--------~~~~~~~~~~~~   62 (384)
T 2v3a_A            4 RAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADD--GRSYSKPMLS-----------T--------GFSKNKDADGLA   62 (384)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC--CCEECGGGGG-----------G--------TTTTTCCHHHHE
T ss_pred             CCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC--CCccCccccc-----------H--------HHhCCCCHHHhh
Confidence            4799999999999999999999984  689999886  3333211000           0        001112233443


Q ss_pred             H-HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccc
Q 020533           85 E-HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC  163 (325)
Q Consensus        85 ~-yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~  163 (325)
                      . ++.++++++++.  ++++++|..++.+.    ++|.+.+        .+ +.+|+||+|||  +.|..|++||.+.  
T Consensus        63 ~~~~~~~~~~~~v~--~~~~~~v~~i~~~~----~~v~~~~--------~~-~~~d~lviAtG--~~p~~p~i~g~~~--  123 (384)
T 2v3a_A           63 MAEPGAMAEQLNAR--ILTHTRVTGIDPGH----QRIWIGE--------EE-VRYRDLVLAWG--AEPIRVPVEGDAQ--  123 (384)
T ss_dssp             EECHHHHHHHTTCE--EECSCCCCEEEGGG----TEEEETT--------EE-EECSEEEECCC--EEECCCCCBSTTT--
T ss_pred             ccCHHHHHHhCCcE--EEeCCEEEEEECCC----CEEEECC--------cE-EECCEEEEeCC--CCcCCCCCCCcCc--
Confidence            2 556667777765  37788888887643    4566643        56 89999999999  7788888888652  


Q ss_pred             cCCCCCccEEecCCCCCC-----CCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeech
Q 020533          164 SSATGTGEVIHSTQYKNG-----KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSR  225 (325)
Q Consensus       164 ~~~~~~g~~~~~~~~~~~-----~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~  225 (325)
                            ..++++..+.+.     ....+++++|||+|.+|+|+|..+++.|.+|+++.+.+ .++|+
T Consensus       124 ------~~v~~~~~~~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~-~~~~~  183 (384)
T 2v3a_A          124 ------DALYPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCE-QVMPG  183 (384)
T ss_dssp             ------TCEEECSSHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-SSSTT
T ss_pred             ------CCEEEECCHHHHHHHHHhhccCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCc-chhhc
Confidence                  235555443221     11247999999999999999999999999999999988 45553

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=99.84  E-value=5.5e-20  Score=172.89  Aligned_cols=198  Identities=13%  Similarity=0.085  Sum_probs=122.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC-CCCceEeecC----CCccCCCCCCCCCCCCCCCCHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY-SYDRLRLHLA----KQFCQLPHLPFPSSYPMFVSRA   81 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~-~y~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~   81 (325)
                      ++||+|||||++|+++|..|++.|.+|+|||+++.+||+|... +.+...+...    ..+..+..+..+.. .......
T Consensus         6 ~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~-~~~~~~~   84 (482)
T 1ojt_A            6 EYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYP-EPELDID   84 (482)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCC-CCCCCHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccC-CCccCHH
Confidence            5799999999999999999999999999999998999887532 1111000000    00000000000000 0112222


Q ss_pred             HHHH-----------HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecC-------CCCceeEEEEEeCeEEE
Q 020533           82 QFIE-----------HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLL-------SPGREIEEYYSGRFLVV  143 (325)
Q Consensus        82 ~~~~-----------yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~-------~~~~~~~~~~~ad~vIi  143 (325)
                      .+..           .+...+++.++..  +.++.+. +  +  .+.+.|...++.       ++  +..+ +.+|+||+
T Consensus        85 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~--~~g~~~~-~--~--~~~v~v~~~~g~~~~~~~~~g--~~~~-i~ad~lVi  154 (482)
T 1ojt_A           85 MLRAYKDGVVSRLTGGLAGMAKSRKVDV--IQGDGQF-L--D--PHHLEVSLTAGDAYEQAAPTG--EKKI-VAFKNCII  154 (482)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEE--EEEEEEE-E--E--TTEEEEEEEEEEETTEEEEEE--EEEE-EEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCcEE--EeeEEEE-c--c--CCEEEEEecCCcccccccccC--cceE-EEcCEEEE
Confidence            3322           2344556666543  6665443 2  2  255666644320       00  2256 89999999


Q ss_pred             cccCCCCCCCCC-CCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCee
Q 020533          144 ASGETTNPFTPD-IRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHV  222 (325)
Q Consensus       144 AtG~~~~p~~p~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~  222 (325)
                      |||  +.|..|+ ++ .         ...++++.+..... ..+++++|||+|.+|+|+|..|++.|.+|+++.|++ .+
T Consensus       155 AtG--s~p~~~~~i~-~---------~~~v~~~~~~~~~~-~~~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~-~~  220 (482)
T 1ojt_A          155 AAG--SRVTKLPFIP-E---------DPRIIDSSGALALK-EVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMD-GL  220 (482)
T ss_dssp             CCC--EEECCCSSCC-C---------CTTEECHHHHTTCC-CCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSS-SS
T ss_pred             CCC--CCCCCCCCCC-c---------cCcEEcHHHHhccc-ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECC-cc
Confidence            999  5576665 44 2         22355555444322 247999999999999999999999999999999998 56


Q ss_pred             echhhHH
Q 020533          223 LSREMVY  229 (325)
Q Consensus       223 ~p~~~~~  229 (325)
                      +|..+.+
T Consensus       221 l~~~~~~  227 (482)
T 1ojt_A          221 MQGADRD  227 (482)
T ss_dssp             STTSCHH
T ss_pred             ccccCHH
Confidence            6654433

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=99.84  E-value=2.4e-21  Score=178.18  Aligned_cols=167  Identities=19%  Similarity=0.254  Sum_probs=112.7

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCC--CeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSI--PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~--~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      ++|+|||||++|+++|..|++.|+  +|+|||+++..+       |...  ..++.+.....  .+.         ++..
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~-------y~~~--~l~~~~l~~~~--~~~---------~~~~   61 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLP-------YQRP--PLSKAYLKSGG--DPN---------SLMF   61 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSS-------BCSG--GGGTGGGGSCC--CTT---------SSBS
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCC-------CCCc--cCCHHHHCCCC--CHH---------HccC
Confidence            689999999999999999999998  899999998643       1110  00111110000  000         1111


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~  165 (325)
                      +..++..+.++..  +. ++|++++.+.    ..|.+.++       .. +.+|+||+|||  +.|+.|++||.+.    
T Consensus        62 ~~~~~~~~~~i~~--~~-~~v~~id~~~----~~v~~~~g-------~~-~~~d~lvlAtG--~~p~~~~i~g~~~----  120 (404)
T 3fg2_P           62 RPEKFFQDQAIEL--IS-DRMVSIDREG----RKLLLASG-------TA-IEYGHLVLATG--ARNRMLDVPNASL----  120 (404)
T ss_dssp             SCHHHHHHTTEEE--EC-CCEEEEETTT----TEEEESSS-------CE-EECSEEEECCC--EEECCCCSTTTTS----
T ss_pred             CCHHHHHhCCCEE--EE-EEEEEEECCC----CEEEECCC-------CE-EECCEEEEeeC--CCccCCCCCCCCC----
Confidence            1223344556543  66 8888887653    35666654       56 89999999999  6788888888653    


Q ss_pred             CCCCccEEecCCCCC-----CCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          166 ATGTGEVIHSTQYKN-----GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       166 ~~~~g~~~~~~~~~~-----~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                         . .+++.....+     .....+++++|||+|.+|+|+|..+.+.|.+|+++.+.+
T Consensus       121 ---~-~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~  175 (404)
T 3fg2_P          121 ---P-DVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAATARAKGLEVDVVELAP  175 (404)
T ss_dssp             ---T-TEECCSSHHHHHHHHHHGGGCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             ---C-cEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCC
Confidence               1 2332221111     112357999999999999999999999999999999998

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=99.84  E-value=7e-21  Score=178.25  Aligned_cols=195  Identities=13%  Similarity=0.120  Sum_probs=126.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC-CCCceEeecCC----CccCCCCCCCCCCCCCCCCHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY-SYDRLRLHLAK----QFCQLPHLPFPSSYPMFVSRA   81 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~-~y~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~   81 (325)
                      ++||+|||||++|+++|..|++.|++|+|||+++.+||+|... +.+...+....    ....++..      .......
T Consensus         4 ~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~------~~~~~~~   77 (466)
T 3l8k_A            4 KYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANV------KIPLDFS   77 (466)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCS------CCCCCHH
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccC------CCCcCHH
Confidence            4799999999999999999999999999999999999998742 11110000000    00000000      1112223


Q ss_pred             HHHHHH------------HHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533           82 QFIEHL------------DHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (325)
Q Consensus        82 ~~~~yl------------~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~  149 (325)
                      .+.++.            ...+++.++.   ....++..++.    +.+.|...++     +..+ +.+|+||+|||  +
T Consensus        78 ~~~~~~~~~~~l~~~~~~~~~~~~~~v~---~~~g~v~~id~----~~~~V~~~~g-----~~~~-~~~d~lviAtG--~  142 (466)
T 3l8k_A           78 TVQDRKDYVQELRFKQHKRNMSQYETLT---FYKGYVKIKDP----THVIVKTDEG-----KEIE-AETRYMIIASG--A  142 (466)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCTTEE---EESEEEEEEET----TEEEEEETTS-----CEEE-EEEEEEEECCC--E
T ss_pred             HHHHHHHhheeccccchHHHHHHhCCCE---EEEeEEEEecC----CeEEEEcCCC-----cEEE-EecCEEEECCC--C
Confidence            333222            2222333332   23335655542    4577766543     2256 88999999999  7


Q ss_pred             CCCCCCCCCccccccCCCCCccEEecCCCC---CCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechh
Q 020533          150 NPFTPDIRGLCSFCSSATGTGEVIHSTQYK---NGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSRE  226 (325)
Q Consensus       150 ~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~  226 (325)
                      .|..|++||.+.+          +++.++.   +.....+++++|||+|.+|+|+|..+++.|.+|+++.|.+ .++|..
T Consensus       143 ~p~~p~i~G~~~~----------~t~~~~~~~~~~l~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~-~~l~~~  211 (466)
T 3l8k_A          143 ETAKLRLPGVEYC----------LTSDDIFGYKTSFRKLPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLD-RALITL  211 (466)
T ss_dssp             EECCCCCTTGGGS----------BCHHHHHSTTCSCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSCTTS
T ss_pred             CccCCCCCCccce----------EeHHHHHHHHHHHhhCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCC-cCCCCC
Confidence            8888999987633          2222221   1223357999999999999999999999999999999998 577765


Q ss_pred             -hHHHHHH
Q 020533          227 -MVYLGVV  233 (325)
Q Consensus       227 -~~~~~~~  233 (325)
                       +.++...
T Consensus       212 ~d~~~~~~  219 (466)
T 3l8k_A          212 EDQDIVNT  219 (466)
T ss_dssp             CCHHHHHH
T ss_pred             CCHHHHHH
Confidence             5554443

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=99.84  E-value=2.2e-20  Score=176.43  Aligned_cols=202  Identities=16%  Similarity=0.150  Sum_probs=128.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhc---CCCeEEEecCCCCCCccCCC-CCCceEeecC----CCccCCCCCCCCC-CCCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQ---SIPYVILERENCYASIWKKY-SYDRLRLHLA----KQFCQLPHLPFPS-SYPMF   77 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~---g~~v~v~e~~~~~Gg~w~~~-~y~~~~~~~~----~~~~~~~~~~~~~-~~~~~   77 (325)
                      ++||+|||||++|+++|..|++.   |.+|+|||+++ +||+|... +.+...+...    .....+..+.++. .....
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~~~~~~~~~   80 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAK   80 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------C
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCcccCcCccchHHHHHHHHHHHHHHHHHhCCCccccCCCc
Confidence            37999999999999999999999   99999999998 99987532 1111000000    0000111111110 00011


Q ss_pred             CCHHHH-----------HHHHHHHHHHcCCCceeeeCeEEEEEEEcC--CCCcEEEEEeecCCCCceeEEEEEeCeEEEc
Q 020533           78 VSRAQF-----------IEHLDHYVSHFNIGPSIRYQRSVESASYDE--ATNMWNVKASNLLSPGREIEEYYSGRFLVVA  144 (325)
Q Consensus        78 ~~~~~~-----------~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~--~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiA  144 (325)
                      .+..++           ..++.+.++++++..  +.++ +..++...  ..+.+.|...++     +... +.+|++|+|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~--~~g~-~~~i~~~~~~~~~~~~V~~~~g-----~~~~-~~~d~lviA  151 (499)
T 1xdi_A           81 ISLPQIHARVKTLAAAQSADITAQLLSMGVQV--IAGR-GELIDSTPGLARHRIKATAADG-----STSE-HEADVVLVA  151 (499)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEE--EESE-EEECCSSSCCSSEEEEEECTTS-----CEEE-EEESEEEEC
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEeE-EEEecCcccCCCCEEEEEeCCC-----cEEE-EEeCEEEEc
Confidence            223333           333556666777553  6665 55554310  013455554332     1136 899999999


Q ss_pred             ccCCCCCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeec
Q 020533          145 SGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLS  224 (325)
Q Consensus       145 tG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p  224 (325)
                      ||  +.|..|+++|.+..        .++++.+.... ...+++++|||+|.+|+|+|..+.+.|.+|+++.|.+ .++|
T Consensus       152 TG--s~p~~p~i~g~~~~--------~v~~~~~~~~~-~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~~l~  219 (499)
T 1xdi_A          152 TG--ASPRILPSAQPDGE--------RILTWRQLYDL-DALPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQD-HVLP  219 (499)
T ss_dssp             CC--EEECCCGGGCCCSS--------SEEEGGGGGGC-SSCCSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSS-SSSC
T ss_pred             CC--CCCCCCCCCCCCcC--------cEEehhHhhhh-hccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-cccc
Confidence            99  77888888887642        35665555442 2346899999999999999999999999999999998 5666


Q ss_pred             hhhHHH
Q 020533          225 REMVYL  230 (325)
Q Consensus       225 ~~~~~~  230 (325)
                      ..+..+
T Consensus       220 ~~d~~~  225 (499)
T 1xdi_A          220 YEDADA  225 (499)
T ss_dssp             CSSHHH
T ss_pred             ccCHHH
Confidence            544433

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=99.84  E-value=1.3e-20  Score=176.19  Aligned_cols=187  Identities=18%  Similarity=0.246  Sum_probs=116.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC-CCCceEeecCCC----ccCCCCCCCCCCCCCCCCH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY-SYDRLRLHLAKQ----FCQLPHLPFPSSYPMFVSR   80 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~-~y~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~   80 (325)
                      .++||+|||||++|+++|..|++.|.+|+|||++ .+||+|... +.+...+.....    ......+.+... ......
T Consensus         3 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~   80 (463)
T 2r9z_A            3 QHFDLIAIGGGSGGLAVAEKAAAFGKRVALIESK-ALGGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQAS-GGTLDW   80 (463)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC----CCH
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCC-CCCCcCcCcCchhHHHHHHHHHHHHHHhhhhhcCcccC-CCCcCH
Confidence            3589999999999999999999999999999998 689988632 111100000000    000000011000 011233


Q ss_pred             HHHHHHHH-----------HHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533           81 AQFIEHLD-----------HYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (325)
Q Consensus        81 ~~~~~yl~-----------~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~  149 (325)
                      .++.++..           ..+++.++..  +.++ +..++  .    ++|++ ++       .+ +.+|+||+|||  +
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~--~~g~-~~~i~--~----~~v~~-~g-------~~-~~~d~lviAtG--s  140 (463)
T 2r9z_A           81 PRLVAGRDRYIGAINSFWDGYVERLGITR--VDGH-ARFVD--A----HTIEV-EG-------QR-LSADHIVIATG--G  140 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEE--EESC-EEEEE--T----TEEEE-TT-------EE-EEEEEEEECCC--E
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCEE--EEeE-EEEcc--C----CEEEE-CC-------EE-EEcCEEEECCC--C
Confidence            34443333           2334455443  5543 33332  1    34655 22       56 89999999999  6


Q ss_pred             CCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechh
Q 020533          150 NPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSRE  226 (325)
Q Consensus       150 ~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~  226 (325)
                      .|..|++||.+..          +++.++... ...+++++|||+|.+|+|+|..|++.|.+|+++.|++ .++|..
T Consensus       141 ~p~~p~i~G~~~~----------~~~~~~~~~-~~~~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~-~~l~~~  205 (463)
T 2r9z_A          141 RPIVPRLPGAELG----------ITSDGFFAL-QQQPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALED-RLLFQF  205 (463)
T ss_dssp             EECCCSCTTGGGS----------BCHHHHHHC-SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSSTTS
T ss_pred             CCCCCCCCCccce----------ecHHHHhhh-hccCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCC-cccccc
Confidence            7888889887432          233222221 1246899999999999999999999999999999998 455543

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=99.84  E-value=2.1e-20  Score=174.98  Aligned_cols=189  Identities=15%  Similarity=0.157  Sum_probs=119.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCC-CCceEeecCCCc----cCCCCCCCCCCCCCCCCHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYS-YDRLRLHLAKQF----CQLPHLPFPSSYPMFVSRA   81 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~-y~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~   81 (325)
                      ++||+|||||++|+++|..|++.|.+|+|||+++ +||+|.... .|...+......    .....+.++.  .......
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~~--~~~~~~~   82 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLKA--KPELDLK   82 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEEC--CCEECHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCCC--CCCcCHH
Confidence            5799999999999999999999999999999988 899885321 111000000000    0000000000  0011222


Q ss_pred             HHH-------HH----HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533           82 QFI-------EH----LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (325)
Q Consensus        82 ~~~-------~y----l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~  150 (325)
                      ++.       ++    +.+.+++.++..  +.++.+. ++  .    ++|++. +       .+ +.||+||+|||  +.
T Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~--~~g~~~~-~~--~----~~v~v~-g-------~~-~~~d~lViATG--s~  142 (464)
T 2eq6_A           83 KLGGWRDQVVKKLTGGVGTLLKGNGVEL--LRGFARL-VG--P----KEVEVG-G-------ER-YGAKSLILATG--SE  142 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEE--EESCEEE-EE--T----TEEEET-T-------EE-EEEEEEEECCC--EE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEE--EeeeEEE-cc--C----CEEEEc-c-------EE-EEeCEEEEcCC--CC
Confidence            222       22    234455566543  6665432 32  2    245444 2       56 89999999999  67


Q ss_pred             CCCCC-CCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHH
Q 020533          151 PFTPD-IRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVY  229 (325)
Q Consensus       151 p~~p~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~  229 (325)
                      |..|+ +++.          +.++++.+........+++++|||+|.+|+|+|..|++.|.+|+++.|.+ .++|..+.+
T Consensus       143 p~~p~gi~~~----------~~v~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~-~~l~~~~~~  211 (464)
T 2eq6_A          143 PLELKGFPFG----------EDVWDSTRALKVEEGLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMP-EILPQGDPE  211 (464)
T ss_dssp             ECCBTTBCCS----------SSEECHHHHTCGGGCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSSTTSCHH
T ss_pred             CCCCCCCCCC----------CcEEcHHHHHhhhhhcCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCC-ccccccCHH
Confidence            77775 5541          13566655544333357999999999999999999999999999999998 566654433

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=99.84  E-value=7.1e-21  Score=177.72  Aligned_cols=193  Identities=16%  Similarity=0.201  Sum_probs=122.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC-CCCceEeecCC----CccCCCCCCCCCCCCCCCCHHH
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY-SYDRLRLHLAK----QFCQLPHLPFPSSYPMFVSRAQ   82 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~-~y~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~   82 (325)
                      +||+|||||++|+++|..|++.|.+|+|||+++.+||+|... +.+...+....    .+.. ..+.++.. ....+..+
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~-~~~g~~~~-~~~~~~~~   79 (455)
T 2yqu_A            2 YDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKK-GLLGAKVK-GVELDLPA   79 (455)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHH-CCTTEEEC-CEEECHHH
T ss_pred             CCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCccceecchhHHHHHHHHHHHHHHhh-hcCCcccC-CCccCHHH
Confidence            699999999999999999999999999999998999987542 11110000000    0000 00000000 00112222


Q ss_pred             HHH-----------HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCC
Q 020533           83 FIE-----------HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNP  151 (325)
Q Consensus        83 ~~~-----------yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p  151 (325)
                      +..           .+.+.+++.++..  +.++.+ .+  +  .+.+.|.. ++       .+ +.||+||+|||  +.|
T Consensus        80 ~~~~~~~~~~~l~~~~~~~~~~~~v~~--~~g~~~-~i--~--~~~~~v~~-~g-------~~-~~~d~lviAtG--~~p  141 (455)
T 2yqu_A           80 LMAHKDKVVQANTQGVEFLFKKNGIAR--HQGTAR-FL--S--ERKVLVEE-TG-------EE-LEARYILIATG--SAP  141 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCEE--EESCEE-ES--S--SSEEEETT-TC-------CE-EEEEEEEECCC--EEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEE--EEeEEE-Ee--c--CCeEEEee-CC-------EE-EEecEEEECCC--CCC
Confidence            222           2344555566543  666543 22  1  24455533 22       46 89999999999  678


Q ss_pred             CCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHHH
Q 020533          152 FTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYL  230 (325)
Q Consensus       152 ~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~~  230 (325)
                      ..|+++|.+.        ..++++.+.... ...+++++|||+|.+|+|+|..|++.|.+|+++.+++ .++|..+..+
T Consensus       142 ~~~~~~g~~~--------~~v~~~~~~~~~-~~~~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~-~~l~~~~~~~  210 (455)
T 2yqu_A          142 LIPPWAQVDY--------ERVVTSTEALSF-PEVPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMD-RILPTMDLEV  210 (455)
T ss_dssp             CCCTTBCCCS--------SSEECHHHHTCC-SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSCTTSCHHH
T ss_pred             CCCCCCCCCc--------CcEechHHhhcc-ccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCC-ccccccCHHH
Confidence            8888887543        135666555432 2346999999999999999999999999999999998 5667544433

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.83  E-value=2.5e-20  Score=173.97  Aligned_cols=193  Identities=18%  Similarity=0.199  Sum_probs=123.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC-CCCceEeecC----CCccCCCCCCCCCCCCCCCCHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY-SYDRLRLHLA----KQFCQLPHLPFPSSYPMFVSRA   81 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~-~y~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~   81 (325)
                      ++||+|||||++|+++|..|++.|.+|+|||++ .+||+|... +.+...+...    .....+..+..+.. .......
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~-~~~~~~~   80 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAE-NVTIDFA   80 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECC-SCEECHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccC-CCccCHH
Confidence            479999999999999999999999999999998 789887432 1111000000    00000000000000 0001111


Q ss_pred             -----------HHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533           82 -----------QFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (325)
Q Consensus        82 -----------~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~  150 (325)
                                 .+.+++.+.+++.++.  ++.++.+. ++    .+.+.|...++     + .+ +.+|+||+|||  +.
T Consensus        81 ~~~~~~~~~~~~l~~~~~~~~~~~gv~--~~~g~~~~-id----~~~v~V~~~~G-----~-~~-i~~d~lViATG--s~  144 (455)
T 1ebd_A           81 KVQEWKASVVKKLTGGVEGLLKGNKVE--IVKGEAYF-VD----ANTVRVVNGDS-----A-QT-YTFKNAIIATG--SR  144 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTTCE--EEESEEEE-EE----TTEEEEEETTE-----E-EE-EECSEEEECCC--EE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEEEEE-cc----CCeEEEEeCCC-----c-EE-EEeCEEEEecC--CC
Confidence                       2334455666666654  37776543 32    25577766432     1 46 89999999999  67


Q ss_pred             CCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhH
Q 020533          151 PFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV  228 (325)
Q Consensus       151 p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~  228 (325)
                      |..|+++|.+.         .++++.+.... ...+++++|||+|.+|+|+|..+++.|.+|+++.|++ .++|..+.
T Consensus       145 p~~~~~~g~~~---------~v~~~~~~~~~-~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~-~~l~~~~~  211 (455)
T 1ebd_A          145 PIELPNFKFSN---------RILDSTGALNL-GEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAG-EILSGFEK  211 (455)
T ss_dssp             ECCBTTBCCCS---------SEECHHHHHTC-SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-SSSTTSCH
T ss_pred             CCCCCCCCccc---------eEecHHHHhcc-ccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC-ccccccCH
Confidence            88888877542         25555443332 2247999999999999999999999999999999998 56664433

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.83  E-value=8.8e-20  Score=170.42  Aligned_cols=191  Identities=18%  Similarity=0.224  Sum_probs=121.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC-CCCceEeecC----CCccCCCC---CCCCCCCCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY-SYDRLRLHLA----KQFCQLPH---LPFPSSYPMF   77 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~-~y~~~~~~~~----~~~~~~~~---~~~~~~~~~~   77 (325)
                      .++||+|||||++|+++|..|++.|.+|+|||+ +.+||+|... +.|+..+...    ..+..+..   +..+.. ...
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~-~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g~~~~-~~~   81 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVA-SPR   81 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECS-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCC-CCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEcc-CCCCCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccCcccC-CCc
Confidence            358999999999999999999999999999999 6799988632 1111000000    00000110   111111 112


Q ss_pred             CCHHHHHHH-----------HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEccc
Q 020533           78 VSRAQFIEH-----------LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASG  146 (325)
Q Consensus        78 ~~~~~~~~y-----------l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG  146 (325)
                      .+..++..+           +.+.+++.++..  +.++.+. +  +.    ++|++.+        .+ +.||+||+|||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~--~~g~~~~-~--~~----~~v~v~~--------~~-~~~d~lviATG  143 (458)
T 1lvl_A           82 LDIGQSVAWKDGIVDRLTTGVAALLKKHGVKV--VHGWAKV-L--DG----KQVEVDG--------QR-IQCEHLLLATG  143 (458)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEE--ECSCEEE-E--ET----TEEEETT--------EE-EECSEEEECCC
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEE--EEEEEEE-c--cC----CEEEEee--------EE-EEeCEEEEeCC
Confidence            233444333           234555666543  6666443 2  21    3455543        46 89999999999


Q ss_pred             CCCCCCCCC-CCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeech
Q 020533          147 ETTNPFTPD-IRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSR  225 (325)
Q Consensus       147 ~~~~p~~p~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~  225 (325)
                        +.|..|+ +|    +      .+.++++.+..... ..+++++|||+|.+|+|+|..|++.|.+|+++.+.+ .++|.
T Consensus       144 --s~p~~~~~~~----~------~~~v~~~~~~~~~~-~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~-~~l~~  209 (458)
T 1lvl_A          144 --SSSVELPMLP----L------GGPVISSTEALAPK-ALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARE-RILPT  209 (458)
T ss_dssp             --EEECCBTTBC----C------BTTEECHHHHTCCS-SCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSS-SSSTT
T ss_pred             --CCCCCCCCCC----c------cCcEecHHHHhhhh-ccCCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCC-ccccc
Confidence              6676654 43    2      23466666554432 257999999999999999999999999999999998 56664


Q ss_pred             hhHHH
Q 020533          226 EMVYL  230 (325)
Q Consensus       226 ~~~~~  230 (325)
                      .+.++
T Consensus       210 ~~~~~  214 (458)
T 1lvl_A          210 YDSEL  214 (458)
T ss_dssp             SCHHH
T ss_pred             cCHHH
Confidence            44333

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=99.83  E-value=1.3e-20  Score=175.72  Aligned_cols=179  Identities=20%  Similarity=0.246  Sum_probs=119.7

Q ss_pred             CeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            8 VEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      +||+|||||++|+++|..|++.  |.+|+|||+++.++....     ++..........             ....++..
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~-----~~~~~~~g~~~~-------------~~~~~~~~   62 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSC-----GIALYLGKEIKN-------------NDPRGLFY   62 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGG-----GHHHHHTTCBGG-------------GCGGGGBS
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccc-----cchhhhcCCccc-------------CCHHHhhh
Confidence            5899999999999999999998  999999999986542110     000000000000             00111111


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~  165 (325)
                      ++.+.++++++.  ++++++|..++.+.  +.+.+......    +..+ +.+|+||+|||  +.|..|++||.+.    
T Consensus        63 ~~~~~~~~~gv~--~~~~~~v~~i~~~~--~~v~v~~~~~g----~~~~-~~~d~lviAtG--s~p~~p~i~g~~~----  127 (452)
T 2cdu_A           63 SSPEELSNLGAN--VQMRHQVTNVDPET--KTIKVKDLITN----EEKT-EAYDKLIMTTG--SKPTVPPIPGIDS----  127 (452)
T ss_dssp             CCHHHHHHTTCE--EEESEEEEEEEGGG--TEEEEEETTTC----CEEE-EECSEEEECCC--EEECCCCCTTTTS----
T ss_pred             cCHHHHHHcCCE--EEeCCEEEEEEcCC--CEEEEEecCCC----ceEE-EECCEEEEccC--CCcCCCCCCCCCC----
Confidence            223344556754  48899999987654  44444321111    1267 89999999999  7788888998753    


Q ss_pred             CCCCccEEecCCCCCCC-----CCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeec
Q 020533          166 ATGTGEVIHSTQYKNGK-----PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLS  224 (325)
Q Consensus       166 ~~~~g~~~~~~~~~~~~-----~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p  224 (325)
                         . .++++..+.+..     ...+++++|||+|.+|+|+|..+++.|.+|+++.|.+ .++|
T Consensus       128 ---~-~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~  186 (452)
T 2cdu_A          128 ---S-RVYLCKNYNDAKKLFEEAPKAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHE-RVLY  186 (452)
T ss_dssp             ---T-TEEECSSHHHHHHHHHHGGGCSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS-STTT
T ss_pred             ---C-CEEEeCcHHHHHHHHHHhccCCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCC-chhh
Confidence               2 355544333211     1257999999999999999999999999999999998 4555

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=99.83  E-value=1.8e-20  Score=174.74  Aligned_cols=188  Identities=19%  Similarity=0.192  Sum_probs=116.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC-CCCceEeecCCC----cc-CCCCCCCCCCCCCCCCH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY-SYDRLRLHLAKQ----FC-QLPHLPFPSSYPMFVSR   80 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~-~y~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~   80 (325)
                      ++||+|||||++|+++|..|++.|.+|+|||++ .+||+|... +.|...+.....    .. ....+.++.. ......
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~~-~~~~~~   81 (450)
T 1ges_A            4 HYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTT-INKFNW   81 (450)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEE-EEEECH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCC-CCCCcccccCccChHHHHHHHHHHHHHHHHHHhcCccCC-CCccCH
Confidence            579999999999999999999999999999998 689987531 111100000000    00 0000000000 001122


Q ss_pred             HHHHHHH-----------HHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533           81 AQFIEHL-----------DHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (325)
Q Consensus        81 ~~~~~yl-----------~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~  149 (325)
                      .++.++.           ....++.++..  +.++ +..++  .    ++|.+ ++       .+ +.+|+||+|||  +
T Consensus        82 ~~l~~~~~~~~~~~~~~~~~~~~~~~v~~--~~g~-~~~i~--~----~~v~~-~g-------~~-~~~d~lviAtG--s  141 (450)
T 1ges_A           82 ETLIASRTAYIDRIHTSYENVLGKNNVDV--IKGF-ARFVD--A----KTLEV-NG-------ET-ITADHILIATG--G  141 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEE--EESC-CEEEE--T----TEEEE-TT-------EE-EEEEEEEECCC--E
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEeE-EEEec--C----CEEEE-CC-------EE-EEeCEEEECCC--C
Confidence            3333333           23334455432  4443 33332  1    24555 22       56 89999999999  7


Q ss_pred             CCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhH
Q 020533          150 NPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV  228 (325)
Q Consensus       150 ~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~  228 (325)
                      .|..|++||.+..          +++.++... ...+++++|||+|.+|+|+|..|++.|.+|+++.|.+ .++|..+.
T Consensus       142 ~p~~p~i~g~~~~----------~~~~~~~~~-~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~-~~l~~~~~  208 (450)
T 1ges_A          142 RPSHPDIPGVEYG----------IDSDGFFAL-PALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFD-APLPSFDP  208 (450)
T ss_dssp             EECCCCSTTGGGS----------BCHHHHHHC-SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSSTTSCH
T ss_pred             CCCCCCCCCccce----------ecHHHhhhh-hhcCCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCC-chhhhhhH
Confidence            7888889887432          222222221 1247899999999999999999999999999999998 45554333

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=99.83  E-value=2.1e-20  Score=174.91  Aligned_cols=195  Identities=16%  Similarity=0.166  Sum_probs=124.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC-CCCceEeecC----CCcc-CCCCCCCCCCCCCCCCH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY-SYDRLRLHLA----KQFC-QLPHLPFPSSYPMFVSR   80 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~-~y~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~   80 (325)
                      ++||+|||||++|+++|..|++.|++|+|+|++ .+||+|... +.+...+...    ..+. .+..+.++..  .....
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~-~~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~~~--~~~~~   79 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK-YWGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGE--VTFDY   79 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEEEC--CEECH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CCCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCCCC--CccCH
Confidence            379999999999999999999999999999998 688877431 1111000000    0000 0000011000  00111


Q ss_pred             -----------HHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533           81 -----------AQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (325)
Q Consensus        81 -----------~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~  149 (325)
                                 ..+.+++.+.+++.++..  ++++.+. +  +  .+.+.|.+.++.     ..+ +.+|+||+|||  +
T Consensus        80 ~~~~~~~~~~~~~l~~~l~~~~~~~gv~~--~~g~~~~-i--d--~~~v~V~~~~G~-----~~~-~~~d~lViAtG--~  144 (464)
T 2a8x_A           80 GIAYDRSRKVAEGRVAGVHFLMKKNKITE--IHGYGTF-A--D--ANTLLVDLNDGG-----TES-VTFDNAIIATG--S  144 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEE--ECEEEEE-S--S--SSEEEEEETTSC-----CEE-EEEEEEEECCC--E
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEeEEEE-e--c--CCeEEEEeCCCc-----eEE-EEcCEEEECCC--C
Confidence                       123334556666666543  6665442 2  2  355777664431     156 89999999999  6


Q ss_pred             CCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHH
Q 020533          150 NPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVY  229 (325)
Q Consensus       150 ~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~  229 (325)
                      .|..|+++|.+.         .++++.+.... ...+++++|||+|.+|+|+|..+++.|.+|+++.|.+ .++|..+.+
T Consensus       145 ~~~~~~~~g~~~---------~~~~~~~~~~~-~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~~~~~  213 (464)
T 2a8x_A          145 STRLVPGTSLSA---------NVVTYEEQILS-RELPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLP-RALPNEDAD  213 (464)
T ss_dssp             EECCCTTCCCBT---------TEECHHHHHTC-SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSSTTSCHH
T ss_pred             CCCCCCCCCCCc---------eEEecHHHhhc-cccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCC-ccccccCHH
Confidence            677788877542         24555443332 2247999999999999999999999999999999998 577754444


Q ss_pred             H
Q 020533          230 L  230 (325)
Q Consensus       230 ~  230 (325)
                      +
T Consensus       214 ~  214 (464)
T 2a8x_A          214 V  214 (464)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=99.83  E-value=2.8e-21  Score=183.21  Aligned_cols=200  Identities=18%  Similarity=0.164  Sum_probs=125.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC--------CCCCccCCC-CCCceEeecCCC----ccCCCCCCCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN--------CYASIWKKY-SYDRLRLHLAKQ----FCQLPHLPFPS   72 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~--------~~Gg~w~~~-~y~~~~~~~~~~----~~~~~~~~~~~   72 (325)
                      .++||+|||||++|+++|..|++.|.+|+|||+++        .+||+|... +.|...+..+..    ...+..+.+..
T Consensus        31 ~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~g~~~  110 (519)
T 3qfa_A           31 YDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKV  110 (519)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBCC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhcCccc
Confidence            35899999999999999999999999999999965        788887542 111110000000    00000111111


Q ss_pred             CCCCCCCHHHHHHHHHHHHH-----------HcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeE
Q 020533           73 SYPMFVSRAQFIEHLDHYVS-----------HFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFL  141 (325)
Q Consensus        73 ~~~~~~~~~~~~~yl~~~a~-----------~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~v  141 (325)
                      ..........+.++..++.+           ..++.   .+..++..++.    ..+.|...++     +..+ +.||+|
T Consensus       111 ~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~---~i~g~a~~~d~----~~v~v~~~~g-----~~~~-i~~d~l  177 (519)
T 3qfa_A          111 EETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVV---YENAYGQFIGP----HRIKATNNKG-----KEKI-YSAERF  177 (519)
T ss_dssp             CSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE---EECSEEEEEET----TEEEEECTTC-----CCCE-EEEEEE
T ss_pred             CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE---EEEEEEEEeeC----CEEEEEcCCC-----CEEE-EECCEE
Confidence            11123445555555554333           23432   23333443322    3345544332     1257 899999


Q ss_pred             EEcccCCCCCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCe
Q 020533          142 VVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVH  221 (325)
Q Consensus       142 IiAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~  221 (325)
                      |+|||  +.|..|++||.+.+         ++++.++.. ....+++++|||+|.+|+|+|..+++.|.+||++.|+  .
T Consensus       178 ViATG--s~p~~p~i~G~~~~---------~~t~~~~~~-l~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~--~  243 (519)
T 3qfa_A          178 LIATG--ERPRYLGIPGDKEY---------CISSDDLFS-LPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS--I  243 (519)
T ss_dssp             EECCC--EEECCCCCTTHHHH---------CBCHHHHTT-CSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS--C
T ss_pred             EEECC--CCcCCCCCCCccCc---------eEcHHHHhh-hhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecc--c
Confidence            99999  78899999997543         233333333 2334678999999999999999999999999999985  4


Q ss_pred             eechhhHHHHH
Q 020533          222 VLSREMVYLGV  232 (325)
Q Consensus       222 ~~p~~~~~~~~  232 (325)
                      ++|..+.++..
T Consensus       244 ~l~~~d~~~~~  254 (519)
T 3qfa_A          244 LLRGFDQDMAN  254 (519)
T ss_dssp             SSTTSCHHHHH
T ss_pred             ccccCCHHHHH
Confidence            67766555443

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=99.83  E-value=5.2e-20  Score=172.93  Aligned_cols=201  Identities=14%  Similarity=0.142  Sum_probs=123.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCC-CCceEeecC----CCcc-CCCCCCCCCCCCCCCCH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYS-YDRLRLHLA----KQFC-QLPHLPFPSSYPMFVSR   80 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~-y~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~   80 (325)
                      ++||+|||||++|+++|..|++.|++|+|||+++.+||+|.... .++..+...    ..+. .+..+..+.........
T Consensus         5 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~   84 (478)
T 1v59_A            5 SHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKINV   84 (478)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEEECH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCccCH
Confidence            47999999999999999999999999999999999999875421 110000000    0000 00000000000001122


Q ss_pred             HHHHHH-----------HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCC-ceeEEEEEeCeEEEcccCC
Q 020533           81 AQFIEH-----------LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPG-REIEEYYSGRFLVVASGET  148 (325)
Q Consensus        81 ~~~~~y-----------l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~-~~~~~~~~ad~vIiAtG~~  148 (325)
                      .++..+           +.+.+++.++.  +++++.+..     +.+.+.|.+.++.... ..... +.||+||+|||. 
T Consensus        85 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~--~~~g~~~~~-----~~~~v~V~~~~G~~~~~~~~~~-i~~d~lViAtGs-  155 (478)
T 1v59_A           85 ANFQKAKDDAVKQLTGGIELLFKKNKVT--YYKGNGSFE-----DETKIRVTPVDGLEGTVKEDHI-LDVKNIIVATGS-  155 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEESEEEES-----SSSEEEEECCTTCTTCCSSCEE-EEEEEEEECCCE-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEEEEEc-----cCCeEEEEecCCCcccccccce-EEeCEEEECcCC-
Confidence            333322           34455566654  477776541     2356777654431100 00134 689999999994 


Q ss_pred             CCCCCCCCCCccccccCCCCCc-cEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhh
Q 020533          149 TNPFTPDIRGLCSFCSSATGTG-EVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREM  227 (325)
Q Consensus       149 ~~p~~p~~~g~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~  227 (325)
                       .|  +.+||.+ +      .+ .++++.+...... .+++++|||+|.+|+|+|..|++.|.+||++.|++ .++|..+
T Consensus       156 -~p--~~~~g~~-~------~~~~v~~~~~~~~~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~-~~l~~~~  223 (478)
T 1v59_A          156 -EV--TPFPGIE-I------DEEKIVSSTGALSLKE-IPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQP-QIGASMD  223 (478)
T ss_dssp             -EE--CCCTTCC-C------CSSSEECHHHHTTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSSSSSC
T ss_pred             -CC--CCCCCCC-C------CCceEEcHHHHHhhhc-cCceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCC-ccccccC
Confidence             44  2456654 2      33 4566555444222 47999999999999999999999999999999998 5666444


Q ss_pred             H
Q 020533          228 V  228 (325)
Q Consensus       228 ~  228 (325)
                      .
T Consensus       224 ~  224 (478)
T 1v59_A          224 G  224 (478)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=99.83  E-value=2.3e-21  Score=179.90  Aligned_cols=185  Identities=18%  Similarity=0.183  Sum_probs=117.1

Q ss_pred             eEEEECCChHHHHHHHHHHhcCC--CeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            9 EVIMVGAGTSGLATAACLSLQSI--PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~--~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      +|+|||||++|+++|..|++.|.  +|+|||+++..+.       ..+.+  +...   ...............      
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~-------~~~~l--~~~~---~~~~~~~~~~~~~~~------   63 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSF-------ANCAL--PYVI---GEVVEDRRYALAYTP------   63 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSB-------CGGGH--HHHH---TTSSCCGGGTBCCCH------
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCC-------Ccchh--HHHH---cCCccchhhhhhcCH------
Confidence            69999999999999999999884  7999999886432       11100  0000   000000000001111      


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA  166 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~~  166 (325)
                       .++.+++++..  +.+++|++++...  ..  +......++  +..+ +.||+||+|||  +.|+.|+++|...|    
T Consensus        64 -~~~~~~~~i~~--~~~~~V~~id~~~--~~--~~~~~~~~~--~~~~-~~yd~lVIATG--s~p~~p~i~g~~~~----  127 (437)
T 4eqs_A           64 -EKFYDRKQITV--KTYHEVIAINDER--QT--VSVLNRKTN--EQFE-ESYDKLILSPG--ASANSLGFESDITF----  127 (437)
T ss_dssp             -HHHHHHHCCEE--EETEEEEEEETTT--TE--EEEEETTTT--EEEE-EECSEEEECCC--EEECCCCCCCTTEE----
T ss_pred             -HHHHHhcCCEE--EeCCeEEEEEccC--cE--EEEEeccCC--ceEE-EEcCEEEECCC--CccccccccCceEE----
Confidence             23345566544  8899999987654  33  333332222  3367 89999999999  77888888886554    


Q ss_pred             CCCccEEecCCCCC--CCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHHH
Q 020533          167 TGTGEVIHSTQYKN--GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYL  230 (325)
Q Consensus       167 ~~~g~~~~~~~~~~--~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~~  230 (325)
                        ..+.+......+  ....++++++|||+|.+|+|+|..+++.|.+||+++|++ .++|..+.+.
T Consensus       128 --~~~~~~~~~~l~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~ll~~~d~~~  190 (437)
T 4eqs_A          128 --TLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSD-KINKLMDADM  190 (437)
T ss_dssp             --CCSSHHHHHHHHHHHHHHTCCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSS-CCSTTSCGGG
T ss_pred             --eeccHHHHHHHHHhhhccCCcEEEEECCccchhhhHHHHHhcCCcceeeeeec-cccccccchh
Confidence              221111110000  011246899999999999999999999999999999998 5666554433

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=99.83  E-value=3.2e-20  Score=172.95  Aligned_cols=177  Identities=17%  Similarity=0.165  Sum_probs=118.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            8 VEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      +||+|||||++|+++|..|++.  |.+|+|||+++..|..       .+.+  +....  ..         +....++..
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~-------~~~~--~~~~~--~~---------~~~~~~~~~   60 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFL-------SAGM--QLYLE--GK---------VKDVNSVRY   60 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBC-------GGGH--HHHHT--TS---------SCCGGGSBS
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcc-------cccc--hhhhc--Cc---------cCCHHHhhc
Confidence            4899999999999999999998  8999999999876521       1000  00000  00         001111222


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~  165 (325)
                      ++.+.++++++.  ++++++|..++.+.  +.  |.+.+...+  +..+ +.+|+||+|||  +.|..|++||.+.    
T Consensus        61 ~~~~~~~~~gv~--~~~~~~v~~i~~~~--~~--v~~~~~~~g--~~~~-~~~d~lviAtG--~~p~~p~i~G~~~----  125 (447)
T 1nhp_A           61 MTGEKMESRGVN--VFSNTEITAIQPKE--HQ--VTVKDLVSG--EERV-ENYDKLIISPG--AVPFELDIPGKDL----  125 (447)
T ss_dssp             CCHHHHHHTTCE--EEETEEEEEEETTT--TE--EEEEETTTC--CEEE-EECSEEEECCC--EEECCCCSTTTTS----
T ss_pred             CCHHHHHHCCCE--EEECCEEEEEeCCC--CE--EEEEecCCC--ceEE-EeCCEEEEcCC--CCcCCCCCCCCCC----
Confidence            223344556654  47899999887654  44  444331111  2246 89999999999  7788899998753    


Q ss_pred             CCCCccEEecCCCCCC-------CCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeec
Q 020533          166 ATGTGEVIHSTQYKNG-------KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLS  224 (325)
Q Consensus       166 ~~~~g~~~~~~~~~~~-------~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p  224 (325)
                         . .++++..+.+.       ....+++++|||+|.+|+|+|..+++.|.+|+++.+.+ .++|
T Consensus       126 ---~-~v~~~~~~~~~~~l~~~~~~~~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~-~~l~  186 (447)
T 1nhp_A          126 ---D-NIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILD-RPLG  186 (447)
T ss_dssp             ---B-SEECCCHHHHHHHHHHHHTCTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-STTT
T ss_pred             ---C-CeEEECCHHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCc-cccc
Confidence               2 25554433221       11257999999999999999999999999999999988 4444

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=99.83  E-value=4.5e-20  Score=173.56  Aligned_cols=197  Identities=19%  Similarity=0.190  Sum_probs=122.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecC---C------CCCCccCCC-CCCceEeecCCC----ccCCCCCCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERE---N------CYASIWKKY-SYDRLRLHLAKQ----FCQLPHLPFP   71 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~---~------~~Gg~w~~~-~y~~~~~~~~~~----~~~~~~~~~~   71 (325)
                      ..+||+|||||++|+++|..|++.|++|+|||+.   +      .+||+|... +.|...+..+..    ......+.+.
T Consensus         8 ~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~g~~   87 (483)
T 3dgh_A            8 YDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAYGWN   87 (483)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHHHHHhcCcc
Confidence            4689999999999999999999999999999942   1      388988542 111110000000    0000001111


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHH-----------cCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCe
Q 020533           72 SSYPMFVSRAQFIEHLDHYVSH-----------FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRF  140 (325)
Q Consensus        72 ~~~~~~~~~~~~~~yl~~~a~~-----------~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~  140 (325)
                      ..........++.++..++.+.           .++.   .+......++    ...+.|...++     + .+ +.+|+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~g~a~~~~----~~~v~v~~~~g-----~-~~-~~~d~  153 (483)
T 3dgh_A           88 VDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVE---YINGLGSFVD----SHTLLAKLKSG-----E-RT-ITAQT  153 (483)
T ss_dssp             CCCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE---EECSEEEEEE----TTEEEEECTTC-----C-EE-EEEEE
T ss_pred             cCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE---EEEeEEEEcc----CCEEEEEeCCC-----e-EE-EEcCE
Confidence            1111234555666655554432           2332   2233333222    23455554332     1 57 89999


Q ss_pred             EEEcccCCCCCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533          141 LVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       141 vIiAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                      ||+|||  +.|..|++||.+.+         .+++.+... ....+++++|||+|.+|+|+|..+++.|.+|+++.|+. 
T Consensus       154 lviATG--s~p~~p~i~G~~~~---------~~~~~~~~~-~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-  220 (483)
T 3dgh_A          154 FVIAVG--GRPRYPDIPGAVEY---------GITSDDLFS-LDREPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSI-  220 (483)
T ss_dssp             EEECCC--EEECCCSSTTHHHH---------CBCHHHHTT-CSSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC-
T ss_pred             EEEeCC--CCcCCCCCCCcccc---------cCcHHHHhh-hhhcCCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCC-
Confidence            999999  78999999998653         234333333 23357899999999999999999999999999999853 


Q ss_pred             eeechhhHHH
Q 020533          221 HVLSREMVYL  230 (325)
Q Consensus       221 ~~~p~~~~~~  230 (325)
                       ++|..+.++
T Consensus       221 -~l~~~d~~~  229 (483)
T 3dgh_A          221 -VLRGFDQQM  229 (483)
T ss_dssp             -SSTTSCHHH
T ss_pred             -CCcccCHHH
Confidence             555544433

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=99.82  E-value=2.2e-20  Score=175.68  Aligned_cols=189  Identities=15%  Similarity=0.144  Sum_probs=116.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC-CCCceEeecC----CCccCCCCCCCCCCCCCCCCHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY-SYDRLRLHLA----KQFCQLPHLPFPSSYPMFVSRA   81 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~-~y~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~   81 (325)
                      .+||+|||||++|+++|..|++.|++|+|||+ +.+||+|... +++...+...    ........+.+.... ......
T Consensus        26 ~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~~~-~~~~~~  103 (484)
T 3o0h_A           26 DFDLFVIGSGSGGVRAARLAGALGKRVAIAEE-YRIGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYAD-PIFNWE  103 (484)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCCCC-CEECHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCcCEEEEEeC-CCCCCceeccCccccHHHHHHHHHHHHHHHHHhCCcccCC-CccCHH
Confidence            57999999999999999999999999999999 6789987531 1111000000    000000001110000 011222


Q ss_pred             -----------HHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEe-ecCCCCceeEEEEEeCeEEEcccCCC
Q 020533           82 -----------QFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKAS-NLLSPGREIEEYYSGRFLVVASGETT  149 (325)
Q Consensus        82 -----------~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~-~~~~~~~~~~~~~~ad~vIiAtG~~~  149 (325)
                                 .+..++....+..++..  ..+ ++..++.      +.+.+. ++       .. +.+|++|+|||  +
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~g-~~~~i~~------~~v~v~~~~-------~~-~~~d~lviAtG--~  164 (484)
T 3o0h_A          104 KLVAAKNKEISRLEGLYREGLQNSNVHI--YES-RAVFVDE------HTLELSVTG-------ER-ISAEKILIATG--A  164 (484)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEE--EES-CEEEEET------TEEEETTTC-------CE-EEEEEEEECCC--E
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEe-EEEEeeC------CEEEEecCC-------eE-EEeCEEEEccC--C
Confidence                       23334444555556542  443 3444431      235553 21       56 89999999999  6


Q ss_pred             CCC-CCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhH
Q 020533          150 NPF-TPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV  228 (325)
Q Consensus       150 ~p~-~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~  228 (325)
                      .|. .|++||.+..          +++..+.. ....+++++|||+|.+|+|+|..+.+.|.+|+++.|.+ .++|..+.
T Consensus       165 ~p~~~p~i~G~~~~----------~~~~~~~~-~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~~~  232 (484)
T 3o0h_A          165 KIVSNSAIKGSDLC----------LTSNEIFD-LEKLPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGD-LILRNFDY  232 (484)
T ss_dssp             EECCC--CBTGGGS----------BCTTTGGG-CSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSSTTSCH
T ss_pred             CcccCCCCCCcccc----------ccHHHHHh-HHhcCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCC-ccccccCH
Confidence            787 8888887643          23333322 23347999999999999999999999999999999998 45554443

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=99.82  E-value=1.4e-20  Score=174.44  Aligned_cols=174  Identities=17%  Similarity=0.169  Sum_probs=116.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC--CeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI--PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI   84 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~--~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (325)
                      .+||+|||||++|+++|..|++.|.  +|+|+|+++.++       |...  ..++.+...  ..         ...++.
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~-------~~~~--~l~~~~~~~--~~---------~~~~~~   63 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIP-------HHLP--PLSKAYLAG--KA---------TAESLY   63 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCC-------BCSG--GGGTTTTTT--CS---------CSGGGB
T ss_pred             CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCC-------CcCC--CCcHHHhCC--CC---------ChHHhc
Confidence            4799999999999999999999998  799999987643       1100  001111000  00         000111


Q ss_pred             HHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCcccccc
Q 020533           85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS  164 (325)
Q Consensus        85 ~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~  164 (325)
                      ....+++++.++.  ++++++|..++.+.    +.|++.++       .+ +.||+||+|||  +.|+.|++||.+.   
T Consensus        64 ~~~~~~~~~~gv~--~~~~~~v~~i~~~~----~~v~~~~g-------~~-~~~d~lviAtG--~~p~~~~i~G~~~---  124 (431)
T 1q1r_A           64 LRTPDAYAAQNIQ--LLGGTQVTAINRDR----QQVILSDG-------RA-LDYDRLVLATG--GRPRPLPVASGAV---  124 (431)
T ss_dssp             SSCHHHHHHTTEE--EECSCCEEEEETTT----TEEEETTS-------CE-EECSEEEECCC--EEECCCGGGTTHH---
T ss_pred             ccCHHHHHhCCCE--EEeCCEEEEEECCC----CEEEECCC-------CE-EECCEEEEcCC--CCccCCCCCCccc---
Confidence            1112334556654  48889999987643    35666543       46 89999999999  6788888888753   


Q ss_pred             CCCCCc-c-EEecCCCCC-----CCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeec
Q 020533          165 SATGTG-E-VIHSTQYKN-----GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLS  224 (325)
Q Consensus       165 ~~~~~g-~-~~~~~~~~~-----~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p  224 (325)
                          .+ . +++.....+     .....+++|+|||+|.+|+|+|..+.+.|.+|+++.+.+ .++|
T Consensus       125 ----~~~~~v~~~~~~~d~~~l~~~l~~~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~-~~l~  186 (431)
T 1q1r_A          125 ----GKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAA-RVLE  186 (431)
T ss_dssp             ----HHSTTEEESSSHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-STTT
T ss_pred             ----CCCceEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCC-cccc
Confidence                22 1 332221111     112357999999999999999999999999999999988 4444

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=99.82  E-value=5.1e-20  Score=172.88  Aligned_cols=199  Identities=14%  Similarity=0.123  Sum_probs=119.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC------CCCccCCC-CCCceEeecCC-Ccc----CCCCCCCCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC------YASIWKKY-SYDRLRLHLAK-QFC----QLPHLPFPSS   73 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~------~Gg~w~~~-~y~~~~~~~~~-~~~----~~~~~~~~~~   73 (325)
                      .++||+|||||++|+++|..|++.|++|+|||+++.      +||+|... +.+...+.... ...    .+..+.+...
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~   81 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTG   81 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence            368999999999999999999999999999999974      44444221 11100000000 000    0001110000


Q ss_pred             CCCCCCHHHHHHHH-----------HHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEE
Q 020533           74 YPMFVSRAQFIEHL-----------DHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLV  142 (325)
Q Consensus        74 ~~~~~~~~~~~~yl-----------~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vI  142 (325)
                       ........+.++.           ....++.++..  ..++ +..+    +...+.|...++     +... +.+|+||
T Consensus        82 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~g~-~~~~----~~~~~~v~~~~g-----~~~~-~~~d~lv  147 (476)
T 3lad_A           82 -EVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTL--FEGH-GKLL----AGKKVEVTAADG-----SSQV-LDTENVI  147 (476)
T ss_dssp             -CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEE--EESE-EEEC----STTCEEEECTTS-----CEEE-ECCSCEE
T ss_pred             -CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEeE-EEEe----cCCEEEEEcCCC-----ceEE-EEcCEEE
Confidence             0112223333322           23344455432  4443 2222    235566665433     2257 8999999


Q ss_pred             EcccCCCCCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCee
Q 020533          143 VASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHV  222 (325)
Q Consensus       143 iAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~  222 (325)
                      +|||  +.|..|+.++.+        ...++++.+... ....+++++|||+|.+|+|+|..+++.|.+|+++.|.+ .+
T Consensus       148 lAtG--~~p~~~~~~~~~--------~~~v~~~~~~~~-~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~-~~  215 (476)
T 3lad_A          148 LASG--SKPVEIPPAPVD--------QDVIVDSTGALD-FQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMD-KF  215 (476)
T ss_dssp             ECCC--EEECCCTTSCCC--------SSSEEEHHHHTS-CSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-SS
T ss_pred             EcCC--CCCCCCCCCCCC--------cccEEechhhhc-cccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-Cc
Confidence            9999  667666554432        224566555443 33457999999999999999999999999999999998 56


Q ss_pred             echhhHHH
Q 020533          223 LSREMVYL  230 (325)
Q Consensus       223 ~p~~~~~~  230 (325)
                      +|..+..+
T Consensus       216 l~~~~~~~  223 (476)
T 3lad_A          216 LPAVDEQV  223 (476)
T ss_dssp             STTSCHHH
T ss_pred             CcccCHHH
Confidence            66544433

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=99.82  E-value=1.2e-19  Score=170.80  Aligned_cols=196  Identities=13%  Similarity=0.136  Sum_probs=118.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHh-cCCCeEEEe--------cCCCCCCccCCC-CCCceEeecCCCc----cCCCCCCCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSL-QSIPYVILE--------RENCYASIWKKY-SYDRLRLHLAKQF----CQLPHLPFPS   72 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~-~g~~v~v~e--------~~~~~Gg~w~~~-~y~~~~~~~~~~~----~~~~~~~~~~   72 (325)
                      ++||+|||||++|+++|..|++ .|.+|+|||        +.+.+||+|... ++|...+......    .....+.+..
T Consensus         3 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~   82 (490)
T 1fec_A            3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGWEL   82 (490)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEC
T ss_pred             cccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCccccCCCcchhhHHHHHHHHHHHHHHHHhcCccc
Confidence            5799999999999999999999 999999999        366789987531 1111000000000    0000000000


Q ss_pred             CCC-CCCCHHHHHHHH-----------HHHHHHc-CCCceeeeCeEEEEEEEcCCCCcEEEEE---eecCCCCceeEEEE
Q 020533           73 SYP-MFVSRAQFIEHL-----------DHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKA---SNLLSPGREIEEYY  136 (325)
Q Consensus        73 ~~~-~~~~~~~~~~yl-----------~~~a~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~---~~~~~~~~~~~~~~  136 (325)
                      ... ......++.++.           ....++. ++.  ++.++ +..++  .  ..+.+..   .++.    .... +
T Consensus        83 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~--~~~g~-~~~i~--~--~~v~v~~~~~~~g~----~~~~-~  150 (490)
T 1fec_A           83 DRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLT--FHQGF-GALQD--N--HTVLVRESADPNSA----VLET-L  150 (490)
T ss_dssp             CGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEE--EEESE-EEEEE--T--TEEEEESSSSTTSC----EEEE-E
T ss_pred             CCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcE--EEEeE-EEEee--C--CEEEEEeeccCCCC----ceEE-E
Confidence            000 011223333332           2333444 543  35554 55543  1  3333332   0110    0146 8


Q ss_pred             EeCeEEEcccCCCCCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhc---cCeEE
Q 020533          137 SGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANH---AAKTS  213 (325)
Q Consensus       137 ~ad~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~---~~~v~  213 (325)
                      .+|+||+|||  +.|..|++||.+..          +++.++.. ....+++++|||+|.+|+|+|..+.+.   |.+|+
T Consensus       151 ~~d~lviAtG--s~p~~p~i~g~~~~----------~~~~~~~~-~~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vt  217 (490)
T 1fec_A          151 DTEYILLATG--SWPQHLGIEGDDLC----------ITSNEAFY-LDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVD  217 (490)
T ss_dssp             EEEEEEECCC--EEECCCCSBTGGGC----------BCHHHHTT-CSSCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEE
T ss_pred             EcCEEEEeCC--CCCCCCCCCCccce----------ecHHHHhh-hhhcCCeEEEECCCHHHHHHHHHHHhhccCcCeEE
Confidence            9999999999  77888888887432          23333322 223478999999999999999999999   99999


Q ss_pred             EEEecCCeeechhhH
Q 020533          214 LVVRSPVHVLSREMV  228 (325)
Q Consensus       214 ~~~r~~~~~~p~~~~  228 (325)
                      ++.|.+ .++|..+.
T Consensus       218 lv~~~~-~~l~~~d~  231 (490)
T 1fec_A          218 LAYRGD-MILRGFDS  231 (490)
T ss_dssp             EEESSS-SSSTTSCH
T ss_pred             EEEcCC-CcccccCH
Confidence            999998 56665433

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=99.82  E-value=2.6e-20  Score=174.26  Aligned_cols=190  Identities=17%  Similarity=0.154  Sum_probs=117.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC-CCCceEeec----CCCccCCCCCCCCCCCCCCCCHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY-SYDRLRLHL----AKQFCQLPHLPFPSSYPMFVSRA   81 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~-~y~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~   81 (325)
                      ++||+|||||++|+++|..|++.|++|+|||+ +.+||+|... +.+...+..    ......++.+.+.... ......
T Consensus         5 ~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~~~-~~~~~~   82 (463)
T 4dna_A            5 DYDLFVIGGGSGGVRSGRLAAALGKKVAIAEE-FRYGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGE-SRFDWA   82 (463)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEEES-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEECC-CEECHH
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCEEEEEeC-CCCCCcccccCchhhHHHHHHHHHHHHHHHHHhcCcccCC-CCcCHH
Confidence            58999999999999999999999999999999 6799987531 111100000    0000000001000000 011222


Q ss_pred             -----------HHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533           82 -----------QFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (325)
Q Consensus        82 -----------~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~  150 (325)
                                 .+..++....+..++..  ..+ ++..++      .+.+.+...  +    .. +.+|++|+|||  +.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~--~~g-~~~~i~------~~~v~~~~~--~----~~-~~~d~lviAtG--~~  144 (463)
T 4dna_A           83 KLVAAKEQEIARLEGLYRKGLANAGAEI--LDT-RAELAG------PNTVKLLAS--G----KT-VTAERIVIAVG--GH  144 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCEE--EES-CEEESS------SSEEEETTT--T----EE-EEEEEEEECCC--EE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEE-EEEEee------CCEEEEecC--C----eE-EEeCEEEEecC--CC
Confidence                       23333444455556542  443 333331      234555211  1    67 89999999999  67


Q ss_pred             CC-CCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhH
Q 020533          151 PF-TPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV  228 (325)
Q Consensus       151 p~-~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~  228 (325)
                      |. .|++||.+..          +++.++.. ....+++++|||+|.+|+|+|..+.+.|.+|+++.|.+ .++|..+.
T Consensus       145 p~~~p~i~G~~~~----------~~~~~~~~-~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~-~~l~~~~~  211 (463)
T 4dna_A          145 PSPHDALPGHELC----------ITSNEAFD-LPALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGK-EILSRFDQ  211 (463)
T ss_dssp             ECCCTTSTTGGGC----------BCHHHHTT-CSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSSTTSCH
T ss_pred             cccCCCCCCcccc----------ccHHHHhh-hhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-ccccccCH
Confidence            88 8889887632          23333222 22347999999999999999999999999999999998 45554443

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=99.81  E-value=1.8e-20  Score=175.64  Aligned_cols=192  Identities=17%  Similarity=0.164  Sum_probs=119.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCC-CCceEeecC-CC---ccCCCCC-CCCCCCCCCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYS-YDRLRLHLA-KQ---FCQLPHL-PFPSSYPMFVS   79 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~-y~~~~~~~~-~~---~~~~~~~-~~~~~~~~~~~   79 (325)
                      .++||+|||||++|+++|..|++.|++|+|||++ .+||+|.+.. ++...+... ..   ....+.+ ..+.. .....
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~~~-~~~~~   80 (467)
T 1zk7_A            3 PPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAAT-VPTID   80 (467)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-STTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSCCC-CCCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC-CCCccccCCCccchHHHHHHHHHHHHHhhhhhcCCccCC-CCccC
Confidence            3589999999999999999999999999999998 7899886321 111000000 00   0001111 01100 01112


Q ss_pred             HHHHH-------HHHH-----HHHHHc-CCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEccc
Q 020533           80 RAQFI-------EHLD-----HYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASG  146 (325)
Q Consensus        80 ~~~~~-------~yl~-----~~a~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG  146 (325)
                      ..++.       +++.     +..++. ++.  ++.+ ++..++    .+.+.|.+.++     +... +.+|+||+|||
T Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~g-~~~~~~----~~~~~v~~~~g-----~~~~-~~~d~lviAtG  147 (467)
T 1zk7_A           81 RSKLLAQQQARVDELRHAKYEGILGGNPAIT--VVHG-EARFKD----DQSLTVRLNEG-----GERV-VMFDRCLVATG  147 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTHHHHTTCTTEE--EEEE-EEEEEE----TTEEEEEETTS-----SEEE-EECSEEEECCC
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHhccCCeE--EEEE-EEEEcc----CCEEEEEeCCC-----ceEE-EEeCEEEEeCC
Confidence            22332       2332     122222 322  2333 344443    24566665443     1256 89999999999


Q ss_pred             CCCCCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeec
Q 020533          147 ETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLS  224 (325)
Q Consensus       147 ~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p  224 (325)
                        +.|..|++||.+..        .++++.+..+ ....+++++|||+|.+|+|+|..+++.|.+|+++.|++ +++|
T Consensus       148 --s~p~~p~i~G~~~~--------~~~~~~~~~~-~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~  213 (467)
T 1zk7_A          148 --ASPAVPPIPGLKES--------PYWTSTEALA-SDTIPERLAVIGSSVVALELAQAFARLGSKVTVLARNT-LFFR  213 (467)
T ss_dssp             --EEECCCCCTTTTTS--------CCBCHHHHHH-CSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC-TTTT
T ss_pred             --CCCCCCCCCCCCcC--------ceecHHHHhc-ccccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECC-ccCC
Confidence              78889999998653        2344333322 22347999999999999999999999999999999998 5666

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=99.81  E-value=6.1e-20  Score=172.50  Aligned_cols=178  Identities=17%  Similarity=0.321  Sum_probs=118.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI   84 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (325)
                      .+||+|||||++|+++|..|++.  |.+|+|||+++..++...     ++    +...   ..        ......++.
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~-----~~----~~~~---~~--------~~~~~~~l~   95 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQC-----GL----PYVI---SG--------AIASTEKLI   95 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGG-----GH----HHHH---TT--------SSSCGGGGB
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCC-----Cc----chhh---cC--------CcCCHHHhh
Confidence            36999999999999999999996  889999999987642110     00    0000   00        000111111


Q ss_pred             H-HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccc
Q 020533           85 E-HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC  163 (325)
Q Consensus        85 ~-yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~  163 (325)
                      . +...+.+.+++.  ++++++|..++.++  +.+.+....  .+  +..+ +.||+||+|||  +.|..|++||.+.  
T Consensus        96 ~~~~~~~~~~~gv~--~~~~~~v~~i~~~~--~~v~v~~~~--~g--~~~~-~~~d~lviAtG--~~p~~p~i~G~~~--  162 (480)
T 3cgb_A           96 ARNVKTFRDKYGID--AKVRHEVTKVDTEK--KIVYAEHTK--TK--DVFE-FSYDRLLIATG--VRPVMPEWEGRDL--  162 (480)
T ss_dssp             SSCHHHHHHTTCCE--EESSEEEEEEETTT--TEEEEEETT--TC--CEEE-EECSEEEECCC--EEECCCCCBTTTS--
T ss_pred             hcCHHHHHhhcCCE--EEeCCEEEEEECCC--CEEEEEEcC--CC--ceEE-EEcCEEEECCC--CcccCCCCCCccC--
Confidence            1 223344555654  48889999987654  444444311  11  2147 89999999999  7788888998753  


Q ss_pred             cCCCCCccEEecCCCCCCC-------CCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeec
Q 020533          164 SSATGTGEVIHSTQYKNGK-------PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLS  224 (325)
Q Consensus       164 ~~~~~~g~~~~~~~~~~~~-------~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p  224 (325)
                           . .+++...+.+..       ...+++|+|||+|.+|+|+|..+.+.|.+|+++.|.+ .++|
T Consensus       163 -----~-~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~-~~l~  223 (480)
T 3cgb_A          163 -----Q-GVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMIERND-HIGT  223 (480)
T ss_dssp             -----B-TEECCSSHHHHHHHHHHHHSSCCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGG-GTTS
T ss_pred             -----C-CEEEeCCHHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCC-chhh
Confidence                 2 244433322211       1268999999999999999999999999999999988 4555

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=99.81  E-value=5.8e-21  Score=179.84  Aligned_cols=200  Identities=16%  Similarity=0.163  Sum_probs=125.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEec--------CCCCCCccCCC-CCCceEeecCC----CccCCCCCCCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILER--------ENCYASIWKKY-SYDRLRLHLAK----QFCQLPHLPFPS   72 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~--------~~~~Gg~w~~~-~y~~~~~~~~~----~~~~~~~~~~~~   72 (325)
                      .++||+|||||++|+++|..|++.|.+|+|||+        ...+||+|... ++|...+....    .......+.+..
T Consensus         5 ~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~g~~~   84 (488)
T 3dgz_A            5 QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGWEV   84 (488)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhcCccc
Confidence            458999999999999999999999999999998        56789988542 11111100000    000001111111


Q ss_pred             CCCCCCCHHHHHHHHHHHHH-----------HcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeE
Q 020533           73 SYPMFVSRAQFIEHLDHYVS-----------HFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFL  141 (325)
Q Consensus        73 ~~~~~~~~~~~~~yl~~~a~-----------~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~v  141 (325)
                      .........++.++..++.+           ..++.   .+..++..++    ...+.|...++     +..+ +.||+|
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~---~i~g~~~~~~----~~~v~v~~~~g-----~~~~-~~~d~l  151 (488)
T 3dgz_A           85 AQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVK---YFNIKASFVD----EHTVRGVDKGG-----KATL-LSAEHI  151 (488)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE---EECCEEEESS----SSEEEEECTTS-----CEEE-EEEEEE
T ss_pred             CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE---EEEEEEEEcc----CCeEEEEeCCC-----ceEE-EECCEE
Confidence            11123445555555444333           23332   2333333321    23445544332     2257 899999


Q ss_pred             EEcccCCCCCCCCC-CCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533          142 VVASGETTNPFTPD-IRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       142 IiAtG~~~~p~~p~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                      |+|||  +.|..|+ +||.+..         .+++.++.. ....+++++|||+|.+|+|+|..+++.|.+|+++.|++ 
T Consensus       152 ViATG--s~p~~p~~i~G~~~~---------~~~~~~~~~-~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-  218 (488)
T 3dgz_A          152 VIATG--GRPRYPTQVKGALEY---------GITSDDIFW-LKESPGKTLVVGASYVALECAGFLTGIGLDTTVMMRSI-  218 (488)
T ss_dssp             EECCC--EEECCCSSCBTHHHH---------CBCHHHHTT-CSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-
T ss_pred             EEcCC--CCCCCCCCCCCcccc---------cCcHHHHHh-hhhcCCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCc-
Confidence            99999  7899998 9997543         234333333 23356889999999999999999999999999999875 


Q ss_pred             eeechhhHHHHH
Q 020533          221 HVLSREMVYLGV  232 (325)
Q Consensus       221 ~~~p~~~~~~~~  232 (325)
                       ++|..+.++..
T Consensus       219 -~l~~~d~~~~~  229 (488)
T 3dgz_A          219 -PLRGFDQQMSS  229 (488)
T ss_dssp             -SSTTSCHHHHH
T ss_pred             -ccccCCHHHHH
Confidence             56655544443

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=99.81  E-value=2.6e-20  Score=175.44  Aligned_cols=195  Identities=15%  Similarity=0.187  Sum_probs=121.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC-CCCCceEeecC----CCccCCCCCCCCCCCCCCCCHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLA----KQFCQLPHLPFPSSYPMFVSRA   81 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~-~~y~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~   81 (325)
                      ++||+|||||++|+++|..|++.|.+|+|||+++ +||+|.+ .+.|...+...    .....++.+.++.. ....+..
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~-~GGtc~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~~   85 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA-YGTTCARVGCMPSKLLIAAADASYHASQTDLFGIQVD-RISVNGK   85 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC-SSCHHHHHSHHHHHHHHHHHHHHHHHTCGGGGTEECS-EEEECHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC-CCCcccccChhcCHHHHHHHHHHHHHhhhhhcCcCCC-CCccCHH
Confidence            4899999999999999999999999999999975 8887642 11111100000    00000111111100 0123455


Q ss_pred             HHHHHHHHHHHHcCCC----------ceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCC
Q 020533           82 QFIEHLDHYVSHFNIG----------PSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNP  151 (325)
Q Consensus        82 ~~~~yl~~~a~~~~l~----------~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p  151 (325)
                      ++.+++.++.+++...          .. .+..+..-.      +.++|.+.++       .+ +.+|+||+|||  +.|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~g~a~~~------~~~~v~~~~~-------~~-~~~d~lViATG--s~p  148 (492)
T 3ic9_A           86 AVMKRIQTERDRFVGFVVESVESFDEQD-KIRGFAKFL------DEHTLQVDDH-------SQ-VIAKRIVIATG--SRP  148 (492)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCGGG-EEESCEEEE------ETTEEEETTT-------EE-EEEEEEEECCC--EEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCee-EEEEEEEEe------cCCEEEEcCC-------cE-EEeCEEEEccC--CCC
Confidence            6666665554443110          00 111111101      2245666432       67 89999999999  778


Q ss_pred             CCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHHH
Q 020533          152 FTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYL  230 (325)
Q Consensus       152 ~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~~  230 (325)
                      ..|++++..        ...++++.+... ....+++++|||+|.+|+|+|..+++.|.+|+++.|++ .++|..+.++
T Consensus       149 ~~p~~~~~~--------~~~v~t~~~~~~-~~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~~l~~~d~~~  217 (492)
T 3ic9_A          149 NYPEFLAAA--------GSRLLTNDNLFE-LNDLPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSG-SVANLQDEEM  217 (492)
T ss_dssp             CCCHHHHTT--------GGGEECHHHHTT-CSSCCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTT-CCTTCCCHHH
T ss_pred             cCCCCCCcc--------CCcEEcHHHHhh-hhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECC-cccccCCHHH
Confidence            888765432        224555554443 33458999999999999999999999999999999998 4566544433

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=99.81  E-value=2e-20  Score=183.01  Aligned_cols=160  Identities=21%  Similarity=0.248  Sum_probs=121.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      .++||+|||||++||++|..|+++|++|+|||+++.+||.|...             ..+         +.+....++.+
T Consensus       390 ~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~~-------------~~~---------p~~~~~~~~~~  447 (690)
T 3k30_A          390 SDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQE-------------SAL---------PGLSAWGRVKE  447 (690)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHHH-------------HTS---------TTCGGGGHHHH
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeeec-------------cCC---------CchhHHHHHHH
Confidence            45799999999999999999999999999999999999986631             000         12234457888


Q ss_pred             HHHHHHHHc-CCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC------CCCCCCCC
Q 020533           86 HLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN------PFTPDIRG  158 (325)
Q Consensus        86 yl~~~a~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~------p~~p~~~g  158 (325)
                      |+...++++ ++.  +++++++.              ..+.       .+ +.+|+||+|||....      |..|++||
T Consensus       448 ~~~~~~~~~~gv~--~~~~~~v~--------------~~~~-------~~-~~~d~lvlAtG~~~~~~~~~~~~~~~i~G  503 (690)
T 3k30_A          448 YREAVLAELPNVE--IYRESPMT--------------GDDI-------VE-FGFEHVITATGATWRTDGVARFHTTALPI  503 (690)
T ss_dssp             HHHHHHHTCTTEE--EESSCCCC--------------HHHH-------HH-TTCCEEEECCCEEECSSCCSSSCSSCCCB
T ss_pred             HHHHHHHHcCCCE--EEECCeec--------------HHHH-------hh-cCCCEEEEcCCCccccccccccCCCCCCC
Confidence            888888876 543  35554321              1111       34 689999999995432      56778888


Q ss_pred             ccccccCCCCCccEEecCCCCCCCCCCCCeEEEEC--cCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          159 LCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVG--SGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       159 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG--~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .+.        ..++++.++.......+++|+|||  +|.+|+|+|..|++.|.+|+++.+.+
T Consensus       504 ~~~--------~~v~~~~~~l~~~~~~g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~  558 (690)
T 3k30_A          504 AEG--------MQVLGPDDLFAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGA  558 (690)
T ss_dssp             CTT--------SEEECHHHHHTTCCCSSSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCC--------CcEEcHHHHhCCCCCCCCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEeccc
Confidence            753        356666666555556789999999  99999999999999999999999988

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=99.81  E-value=2.8e-20  Score=173.21  Aligned_cols=169  Identities=17%  Similarity=0.199  Sum_probs=121.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      ..++|+|||||++||++|..|++.|++|+|||+.+.+||.|.+.               ++.         +....++.+
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~~g---------------ip~---------~~~~~~~~~  176 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLVYG---------------IPG---------FKLEKSVVE  176 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHHHT---------------SCT---------TTSCHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeec---------------CCC---------ccCCHHHHH
Confidence            46799999999999999999999999999999999999987532               111         112246777


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~  165 (325)
                      +..++++++++..  ++++.|.          ..+++++        .. +.||+||+|||.. .|+.+.+||.+.    
T Consensus       177 ~~~~~l~~~gv~~--~~~~~v~----------~~v~~~~--------~~-~~~d~vvlAtG~~-~~~~~~ipG~~~----  230 (456)
T 2vdc_G          177 RRVKLLADAGVIY--HPNFEVG----------RDASLPE--------LR-RKHVAVLVATGVY-KARDIKAPGSGL----  230 (456)
T ss_dssp             HHHHHHHHTTCEE--ETTCCBT----------TTBCHHH--------HH-SSCSEEEECCCCC-EECCTTCSCCTT----
T ss_pred             HHHHHHHHCCcEE--EeCCEec----------cEEEhhH--------hH-hhCCEEEEecCCC-CCCCCCCCCCcC----
Confidence            7788888888654  7776541          0122222        23 5789999999953 366677888652    


Q ss_pred             CCCCccEEecCC---------CCC--------CCCCCCCeEEEECcCCCHHHHHHHHhhccC-eEEEEEecCCeeechhh
Q 020533          166 ATGTGEVIHSTQ---------YKN--------GKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSPVHVLSREM  227 (325)
Q Consensus       166 ~~~~g~~~~~~~---------~~~--------~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~-~v~~~~r~~~~~~p~~~  227 (325)
                         .+ +++..+         +..        .....+|+|+|||+|++|+|+|..+.+.|. +|++++|++...+|...
T Consensus       231 ---~g-v~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~~~p~~~  306 (456)
T 2vdc_G          231 ---GN-IVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRKNMPGSQ  306 (456)
T ss_dssp             ---TT-EEEHHHHHHHHHHHHCTTTCSSCCTTCSCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCSTTCSSCH
T ss_pred             ---CC-cEEHHHHHHHhhhhhcccccccccccccccCCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCccCCCCCH
Confidence               33 332211         111        123578999999999999999999999987 59999999865566544


Q ss_pred             H
Q 020533          228 V  228 (325)
Q Consensus       228 ~  228 (325)
                      .
T Consensus       307 ~  307 (456)
T 2vdc_G          307 R  307 (456)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=99.80  E-value=3.1e-19  Score=167.63  Aligned_cols=194  Identities=20%  Similarity=0.229  Sum_probs=122.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC-CCCceEeec----CCCccCCCCCCCCCCCCCCCCHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY-SYDRLRLHL----AKQFCQLPHLPFPSSYPMFVSRA   81 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~-~y~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~   81 (325)
                      .+||+|||||++|+++|..|++.|++|+|||++ .+||+|... +++...+..    .........+.++.. ....+..
T Consensus        20 ~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~-~~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~-~~~~~~~   97 (478)
T 3dk9_A           20 SYDYLVIGGGSGGLASARRAAELGARAAVVESH-KLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSC-EGKFNWR   97 (478)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCC-CCCCCHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCcccccCccchHHHHHHHHHHHHHHHHHhcCccCC-CCccCHH
Confidence            489999999999999999999999999999977 688887432 111100000    000001111111111 1223444


Q ss_pred             HHHHHHHHH-----------HHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533           82 QFIEHLDHY-----------VSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (325)
Q Consensus        82 ~~~~yl~~~-----------a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~  150 (325)
                      ++.++...+           ++..++..  ..++ +..++    ...+.|....        .+ +.+|+||+|||  +.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~--~~g~-~~~~~----~~~~~v~~~g--------~~-~~~d~lviAtG--~~  159 (478)
T 3dk9_A           98 VIKEKRDAYVSRLNAIYQNNLTKSHIEI--IRGH-AAFTS----DPKPTIEVSG--------KK-YTAPHILIATG--GM  159 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEE--EESC-EEECS----CSSCEEEETT--------EE-EECSCEEECCC--EE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCcEE--EEeE-EEEee----CCeEEEEECC--------EE-EEeeEEEEccC--CC
Confidence            555544433           33334332  3332 22221    2346666321        67 89999999999  78


Q ss_pred             CCCC---CCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhh
Q 020533          151 PFTP---DIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREM  227 (325)
Q Consensus       151 p~~p---~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~  227 (325)
                      |..|   ++||.+..          +++..+.. ....+++++|||+|.+|+|+|..+++.|.+|+++.|.+ .++|..+
T Consensus       160 p~~p~~~~i~G~~~~----------~~~~~~~~-~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~~d  227 (478)
T 3dk9_A          160 PSTPHESQIPGASLG----------ITSDGFFQ-LEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHD-KVLRSFD  227 (478)
T ss_dssp             ECCCCTTTSTTGGGS----------BCHHHHTT-CCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSCTTSC
T ss_pred             CCCCCcCCCCCCcee----------EchHHhhc-hhhcCccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCC-ccccccC
Confidence            8888   88887532          33333332 22347899999999999999999999999999999998 5667665


Q ss_pred             HHHHH
Q 020533          228 VYLGV  232 (325)
Q Consensus       228 ~~~~~  232 (325)
                      ..+..
T Consensus       228 ~~~~~  232 (478)
T 3dk9_A          228 SMIST  232 (478)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55443

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=99.79  E-value=2.5e-19  Score=174.89  Aligned_cols=150  Identities=20%  Similarity=0.268  Sum_probs=112.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      .++||+|||||++|+++|..|++.|++|+|||+++.+||.|....             .+         +......++.+
T Consensus       372 ~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~~~~-------------~~---------~~~~~~~~~~~  429 (671)
T 1ps9_A          372 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAK-------------QI---------PGKEEFYETLR  429 (671)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHT-------------TS---------TTCTTHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeeeccc-------------cC---------CCHHHHHHHHH
Confidence            357999999999999999999999999999999999998875310             00         01112345666


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEE-EeCeEEEcccCCCCCCCCCCCCcccccc
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYY-SGRFLVVASGETTNPFTPDIRGLCSFCS  164 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~-~ad~vIiAtG~~~~p~~p~~~g~~~~~~  164 (325)
                      ++.+.++++++..  ++++.|..                        .. + .+|+||+|||  +.|+.|++||.+.   
T Consensus       430 ~~~~~~~~~gv~~--~~~~~v~~------------------------~~-~~~~d~lviAtG--~~p~~~~i~G~~~---  477 (671)
T 1ps9_A          430 YYRRMIEVTGVTL--KLNHTVTA------------------------DQ-LQAFDETILASG--IVPRTPPIDGIDH---  477 (671)
T ss_dssp             HHHHHHHHHTCEE--EESCCCCS------------------------SS-SCCSSEEEECCC--EEECCCCCBTTTS---
T ss_pred             HHHHHHHHcCCEE--EeCcEecH------------------------HH-hhcCCEEEEccC--CCcCCCCCCCCCC---
Confidence            7777777777544  66664310                        12 4 7899999999  6788889998764   


Q ss_pred             CCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEE
Q 020533          165 SATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSL  214 (325)
Q Consensus       165 ~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~  214 (325)
                           ..++++.++.......+++|+|||+|.+|+|+|..|++.|.+|++
T Consensus       478 -----~~v~~~~~~l~~~~~~~~~VvVIGgG~~g~E~A~~l~~~G~~vtv  522 (671)
T 1ps9_A          478 -----PKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQ  522 (671)
T ss_dssp             -----TTEEEHHHHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGG
T ss_pred             -----CcEeeHHHHhhCCCCCCCeEEEECCChhHHHHHHHHHhcCCCccc
Confidence                 245665555444456789999999999999999999999987653

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=99.79  E-value=1.4e-19  Score=177.83  Aligned_cols=168  Identities=17%  Similarity=0.184  Sum_probs=118.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      ..+||+|||||++|+++|..|++.|++|+|||+++.+||.|....             .+         +.+.....+.+
T Consensus       388 ~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~~~-------------~~---------pg~~~~~~~~~  445 (729)
T 1o94_A          388 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVA-------------AL---------PGLGEWSYHRD  445 (729)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHT-------------TS---------TTCGGGHHHHH
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeeecc-------------cC---------CChHHHHHHHH
Confidence            357999999999999999999999999999999999999876420             00         11112245666


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC------CCCCCCCCc
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN------PFTPDIRGL  159 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~------p~~p~~~g~  159 (325)
                      |+...++.+.     ..+..++.+..    + ..++.++.       .. +.+|+||+|||....      |..|++||.
T Consensus       446 ~~~~~i~~~~-----~~~~~~v~i~~----~-~~v~~~~~-------~~-~~~d~vviAtG~~~~~~~~~~p~~~~ipG~  507 (729)
T 1o94_A          446 YRETQITKLL-----KKNKESQLALG----Q-KPMTADDV-------LQ-YGADKVIIATGARWNTDGTNCLTHDPIPGA  507 (729)
T ss_dssp             HHHHHHHHHH-----HHSTTCEEECS----C-CCCCHHHH-------HT-SCCSEEEECCCEEECSSCCCTTTSSCCTTC
T ss_pred             HHHHHHHHhh-----cccCCceEEEe----C-eEEehhhc-------cc-cCCCEEEEcCCCCcccccccCccCCCCCCc
Confidence            7666555431     00111111211    1 11333222       34 789999999995422      567889998


Q ss_pred             cccccCCCCCccEEecCCCCCCCCCCCCeEEEEC--cCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          160 CSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVG--SGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       160 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG--~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      +.+      .+.++++.++.+.....+++|+|||  +|.+|+|+|..|++.|.+||+++|++
T Consensus       508 ~~~------~~~v~~~~~~l~~~~~~gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~  563 (729)
T 1o94_A          508 DAS------LPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH  563 (729)
T ss_dssp             CTT------STTEECHHHHHHCCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             ccc------CCCEEEHHHHhcCCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc
Confidence            865      5566776655544455789999999  99999999999999999999999988

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=99.77  E-value=1.1e-18  Score=168.42  Aligned_cols=197  Identities=18%  Similarity=0.231  Sum_probs=121.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecC-C-------CCCCccCC-CCCCceEeecCC-------CccCCCCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERE-N-------CYASIWKK-YSYDRLRLHLAK-------QFCQLPHLP   69 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~-~-------~~Gg~w~~-~~y~~~~~~~~~-------~~~~~~~~~   69 (325)
                      ..+||+||||||+|+++|..|++.|.+|+|||+. +       .+||+|.. .++|...+....       ....+. ..
T Consensus       106 ~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~g-~~  184 (598)
T 2x8g_A          106 YDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHFG-WS  184 (598)
T ss_dssp             SSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT-CC
T ss_pred             ccccEEEECCCccHHHHHHHHHhCCCeEEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhCC-cc
Confidence            4589999999999999999999999999999973 2       36776532 111111110000       000000 00


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHc-----------CCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEe
Q 020533           70 FPSSYPMFVSRAQFIEHLDHYVSHF-----------NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSG  138 (325)
Q Consensus        70 ~~~~~~~~~~~~~~~~yl~~~a~~~-----------~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~a  138 (325)
                      .+.. .......++.+|+.++++.+           ++.   ........++      .|.+.....++   +..+ +.|
T Consensus       185 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~---~~~~~~~~~~------~~~v~v~~~~g---~~~~-~~~  250 (598)
T 2x8g_A          185 LDRS-KISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVT---YLNAKGRLIS------PHEVQITDKNQ---KVST-ITG  250 (598)
T ss_dssp             CCGG-GCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE---EECSEEEEEE------TTEEEEECTTC---CEEE-EEE
T ss_pred             ccCC-cCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcE---EEEEEEEEcC------CCEEEEEeCCC---CeEE-EEe
Confidence            1100 01234567777776655432           222   1222222222      23454433221   2256 899


Q ss_pred             CeEEEcccCCCCCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEec
Q 020533          139 RFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRS  218 (325)
Q Consensus       139 d~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~  218 (325)
                      |+||+|||  +.|+.|++||.+.+         .+++.+... ....+++|+|||+|++|+|+|..|++.|.+||+++|+
T Consensus       251 d~lviAtG--s~p~~p~i~G~~~~---------~~~~~~~~~-~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  318 (598)
T 2x8g_A          251 NKIILATG--ERPKYPEIPGAVEY---------GITSDDLFS-LPYFPGKTLVIGASYVALECAGFLASLGGDVTVMVRS  318 (598)
T ss_dssp             EEEEECCC--EEECCCSSTTHHHH---------CEEHHHHTT-CSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEEeCC--CCCCCCCCCCcccc---------eEcHHHHhh-CccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            99999999  78899999997654         234433332 2345789999999999999999999999999999998


Q ss_pred             CCeeechhhHHHH
Q 020533          219 PVHVLSREMVYLG  231 (325)
Q Consensus       219 ~~~~~p~~~~~~~  231 (325)
                        .++|..+..+.
T Consensus       319 --~~l~~~d~~~~  329 (598)
T 2x8g_A          319 --ILLRGFDQQMA  329 (598)
T ss_dssp             --CSSTTSCHHHH
T ss_pred             --cCcCcCCHHHH
Confidence              46665444443

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=99.77  E-value=7.8e-20  Score=170.30  Aligned_cols=161  Identities=17%  Similarity=0.169  Sum_probs=116.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHh-c------CCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSL-Q------SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVS   79 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~-~------g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (325)
                      +++|+|||||++|+++|..|++ .      |.+|+|||+.+.+||.|++...                       +.++.
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~~gv~-----------------------p~~~~   59 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVA-----------------------PDHPK   59 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSC-----------------------TTCTG
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccccccC-----------------------CCCCC
Confidence            4699999999999999999999 7      9999999999999998864311                       12334


Q ss_pred             HHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCc
Q 020533           80 RAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGL  159 (325)
Q Consensus        80 ~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~  159 (325)
                      ..++..++.+++++.++..  +.+.++     .   .  .|++.+        .. +.||+||+|||.. .|+.|++||.
T Consensus        60 ~~~~~~~~~~~~~~~~v~~--~~~v~v-----~---~--~v~~~~--------~~-~~~d~lViAtG~~-~~~~~~ipG~  117 (456)
T 1lqt_A           60 IKSISKQFEKTAEDPRFRF--FGNVVV-----G---E--HVQPGE--------LS-ERYDAVIYAVGAQ-SDRMLNIPGE  117 (456)
T ss_dssp             GGGGHHHHHHHHTSTTEEE--EESCCB-----T---T--TBCHHH--------HH-HHSSEEEECCCCC-EECCCCCTTT
T ss_pred             HHHHHHHHHHHHhcCCCEE--EeeEEE-----C---C--EEEECC--------Ce-EeCCEEEEeeCCC-CCCCCCCCCC
Confidence            4567788888887766433  455332     1   1  133332        24 6899999999942 2566788887


Q ss_pred             cccccCCCCCccEEecCCC-----------CCCCCCCCCeEEEECcCCCHHHHHHHHhhc--------------------
Q 020533          160 CSFCSSATGTGEVIHSTQY-----------KNGKPYGGKNVLVVGSGNSGMEIALDLANH--------------------  208 (325)
Q Consensus       160 ~~~~~~~~~~g~~~~~~~~-----------~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~--------------------  208 (325)
                      + +      .+ ++++.++           .+...+.+++|+|||+|++|+|+|..|++.                    
T Consensus       118 ~-~------~g-v~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~  189 (456)
T 1lqt_A          118 D-L------PG-SIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPR  189 (456)
T ss_dssp             T-S------TT-EEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTC
T ss_pred             C-C------CC-cEEHHHHHhhhhcCcccccchhhcCCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHC
Confidence            6 4      44 4544332           222345789999999999999999999974                    


Q ss_pred             c-CeEEEEEecCC
Q 020533          209 A-AKTSLVVRSPV  220 (325)
Q Consensus       209 ~-~~v~~~~r~~~  220 (325)
                      + .+|+++.|++.
T Consensus       190 g~~~V~lv~r~~~  202 (456)
T 1lqt_A          190 GIQEVVIVGRRGP  202 (456)
T ss_dssp             CCCEEEEECSSCG
T ss_pred             CCcEEEEEecCCh
Confidence            4 48999999984

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=99.77  E-value=2.1e-19  Score=165.47  Aligned_cols=168  Identities=14%  Similarity=0.114  Sum_probs=109.4

Q ss_pred             CeEEEECCChHHHHHHHHHHh---cCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHH
Q 020533            8 VEVIMVGAGTSGLATAACLSL---QSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI   84 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~---~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (325)
                      ++|+|||||++|+++|..|++   .|.+|+|||+++..+.....                 +.     .........++.
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~-----------------~~-----~~~~~~~~~~~~   59 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPAL-----------------PH-----VAIGVRDVDELK   59 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSS-----------------CC-----CCSSCCCCCCEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccch-----------------hh-----cccCCcCHHHHH
Confidence            489999999999999999999   89999999999854321000                 00     000111222334


Q ss_pred             HHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCcccccc
Q 020533           85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS  164 (325)
Q Consensus        85 ~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~  164 (325)
                      .++.+.++++++..  +.+ +|++++.+.    ..|++.++.+   +..+ +.||+||+|+|  +.|..|.+||++..  
T Consensus        60 ~~~~~~~~~~gv~~--~~~-~v~~i~~~~----~~V~~~~g~~---~~~~-~~~d~lViAtG--~~~~~~~ipG~~~~--  124 (409)
T 3h8l_A           60 VDLSEALPEKGIQF--QEG-TVEKIDAKS----SMVYYTKPDG---SMAE-EEYDYVIVGIG--AHLATELVKGWDKY--  124 (409)
T ss_dssp             EEHHHHTGGGTCEE--EEC-EEEEEETTT----TEEEEECTTS---CEEE-EECSEEEECCC--CEECGGGSBTHHHH--
T ss_pred             HHHHHHHhhCCeEE--EEe-eEEEEeCCC----CEEEEccCCc---ccce-eeCCEEEECCC--CCcCccCCCChhhc--
Confidence            55666666777653  555 888887654    3566665433   2367 89999999999  67888888887643  


Q ss_pred             CCCCCccEEecCCCCCCCCCC------CCeEEEECcC-------------------C------CHHHHHHHH----hhcc
Q 020533          165 SATGTGEVIHSTQYKNGKPYG------GKNVLVVGSG-------------------N------SGMEIALDL----ANHA  209 (325)
Q Consensus       165 ~~~~~g~~~~~~~~~~~~~~~------~~~v~VvG~G-------------------~------s~~e~a~~l----~~~~  209 (325)
                             ..+...+.+...+.      .++++|||+|                   .      .++|+|..+    .+.|
T Consensus       125 -------~~~~~~~~~~~~~~~~l~~~~~~~vViG~G~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~~~g  197 (409)
T 3h8l_A          125 -------GYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKG  197 (409)
T ss_dssp             -------CEESSSTTHHHHHHHHHHHCCSEEEEEEECCBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHHHTTT
T ss_pred             -------CcCcCCHHHHHHHHHHHHHhcCCeEEEEecccccCCCccccccccccCCCCcccCCHHHHHHHHHHHHHHHcC
Confidence                   23333333221111      2567799999                   2      267877554    4556


Q ss_pred             ----CeEEEEEecC
Q 020533          210 ----AKTSLVVRSP  219 (325)
Q Consensus       210 ----~~v~~~~r~~  219 (325)
                          .+|+++.+.+
T Consensus       198 ~~~~~~v~~~~~~~  211 (409)
T 3h8l_A          198 MLDKVHVTVFSPGE  211 (409)
T ss_dssp             CTTTEEEEEECSSS
T ss_pred             CCCCeEEEEEeCCc
Confidence                3799998887

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=99.76  E-value=2.6e-19  Score=167.00  Aligned_cols=164  Identities=16%  Similarity=0.160  Sum_probs=117.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcC--CCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF   83 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g--~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (325)
                      .+++|+|||||++|+.+|..|++.|  .+|+|||+.+.+||.|+....                       +.++...++
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g~~-----------------------p~~~~~~~~   61 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVA-----------------------PDHPEVKNV   61 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSC-----------------------TTCGGGGGH
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeecccC-----------------------CCCccHHHH
Confidence            4679999999999999999999998  899999999999988864311                       122233467


Q ss_pred             HHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccc
Q 020533           84 IEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC  163 (325)
Q Consensus        84 ~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~  163 (325)
                      ..++.++++++++..  ++++.|.        .  .|++.+        .. +.||+||+|||.. .++.|++||.+ . 
T Consensus        62 ~~~~~~~~~~~gv~~--~~~~~v~--------~--~V~~~~--------~~-~~~d~lVlAtGs~-~~~~~~ipG~~-~-  117 (460)
T 1cjc_A           62 INTFTQTARSDRCAF--YGNVEVG--------R--DVTVQE--------LQ-DAYHAVVLSYGAE-DHQALDIPGEE-L-  117 (460)
T ss_dssp             HHHHHHHHTSTTEEE--EBSCCBT--------T--TBCHHH--------HH-HHSSEEEECCCCC-EECCCCCTTTT-S-
T ss_pred             HHHHHHHHHhCCcEE--EeeeEEe--------e--EEEecc--------ce-EEcCEEEEecCcC-CCCCCCCCCCC-C-
Confidence            788888887777543  6665541        1  133322        24 6899999999943 23677899875 2 


Q ss_pred             cCCCCCccEEecCCC----------CCC-CCCCCCeEEEECcCCCHHHHHHHHh--------------------hccC-e
Q 020533          164 SSATGTGEVIHSTQY----------KNG-KPYGGKNVLVVGSGNSGMEIALDLA--------------------NHAA-K  211 (325)
Q Consensus       164 ~~~~~~g~~~~~~~~----------~~~-~~~~~~~v~VvG~G~s~~e~a~~l~--------------------~~~~-~  211 (325)
                           .+ ++++.++          ... ..+.+++|+|||+|++|+|+|..|+                    +.+. +
T Consensus       118 -----~g-v~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~  191 (460)
T 1cjc_A          118 -----PG-VFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKT  191 (460)
T ss_dssp             -----TT-EEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCE
T ss_pred             -----Cc-EEEHHHHHHHhhcCccccccccCCCCCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcE
Confidence                 33 4443322          111 1346899999999999999999999                    4565 7


Q ss_pred             EEEEEecCCee
Q 020533          212 TSLVVRSPVHV  222 (325)
Q Consensus       212 v~~~~r~~~~~  222 (325)
                      |+++.|++...
T Consensus       192 V~lv~r~~~~~  202 (460)
T 1cjc_A          192 VWIVGRRGPLQ  202 (460)
T ss_dssp             EEEECSSCGGG
T ss_pred             EEEEEcCChHh
Confidence            99999998543

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=99.76  E-value=7.7e-18  Score=169.94  Aligned_cols=178  Identities=16%  Similarity=0.156  Sum_probs=120.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      .+||+|||||++|+++|..|++.|++|+|||+++.+||.|. +. +...+         .         . ....++...
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~-~~-~k~~i---------~---------~-~~~~~~~~~  186 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLL-DT-AGEQI---------D---------G-MDSSAWIEQ  186 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGG-GS-SCCEE---------T---------T-EEHHHHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceec-cC-Ccccc---------C---------C-CCHHHHHHH
Confidence            47899999999999999999999999999999999999887 21 10000         0         0 112344455


Q ss_pred             HHHHHHHc-CCCceeeeCeEEEEEEEcCC-------CCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCC
Q 020533           87 LDHYVSHF-NIGPSIRYQRSVESASYDEA-------TNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRG  158 (325)
Q Consensus        87 l~~~a~~~-~l~~~i~~~~~V~~i~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g  158 (325)
                      +.+.+.++ ++  .++.+++|.++.....       .+.+.+...+.... ..... +.||+||+|||  +.|+.|++||
T Consensus       187 ~~~~l~~~~~v--~~~~~~~V~~i~~~~~~~~v~~~~~~~~v~~~~~~~~-~~~~~-i~~d~lVlATG--s~p~~~~ipG  260 (965)
T 2gag_A          187 VTSELAEAEET--THLQRTTVFGSYDANYLIAAQRRTVHLDGPSGPGVSR-ERIWH-IRAKQVVLATG--AHERPIVFEN  260 (965)
T ss_dssp             HHHHHHHSTTE--EEESSEEEEEEETTTEEEEEEECSTTCSSCCCTTCCS-EEEEE-EEEEEEEECCC--EEECCCCCBT
T ss_pred             HHHHHhhcCCc--EEEeCCEEEeeecCCceeeeEeecccccccccccCCC-CceEE-EECCEEEECCC--CccCCCCCCC
Confidence            54445554 54  4588888988764320       00111111000000 01247 89999999999  6678888888


Q ss_pred             ccccccCCCCCccEEecCCC---CC-CCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          159 LCSFCSSATGTGEVIHSTQY---KN-GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       159 ~~~~~~~~~~~g~~~~~~~~---~~-~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .+.       .| ++++...   .+ .....+++|+|||+|.+|+|+|..|++.|.+|+++.+++
T Consensus       261 ~~~-------~g-v~~~~~~~~~l~~~~~~~gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~  317 (965)
T 2gag_A          261 NDR-------PG-IMLAGAVRSYLNRYGVRAGARIAVATTNDSAYELVRELAATGGVVAVIDARS  317 (965)
T ss_dssp             CCS-------TT-EEEHHHHHHHHHTTCEESCSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCS
T ss_pred             CCC-------CC-EEEhHHHHHHHHhcCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCC
Confidence            753       33 4443211   11 123457999999999999999999999999999999998

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=99.76  E-value=3e-18  Score=162.19  Aligned_cols=205  Identities=15%  Similarity=0.144  Sum_probs=120.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC--------CCCCccCC-CCCCceEeecCCCccC-----CCCCCCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN--------CYASIWKK-YSYDRLRLHLAKQFCQ-----LPHLPFPS   72 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~--------~~Gg~w~~-~~y~~~~~~~~~~~~~-----~~~~~~~~   72 (325)
                      .|||+||||||+|+.+|.++++.|.+|+|+|+..        .+||++-+ .+.|+-.+......+.     ...+.+..
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~Gi~~  121 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYGWKF  121 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGTEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhcCccc
Confidence            3799999999999999999999999999999743        47886532 2222111000000000     00000000


Q ss_pred             CCCCCCCHHHHHHHHHHH-----------HHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeE
Q 020533           73 SYPMFVSRAQFIEHLDHY-----------VSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFL  141 (325)
Q Consensus        73 ~~~~~~~~~~~~~yl~~~-----------a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~v  141 (325)
                      . ..-....++.++.++.           .++.++.   .+.....-++    .+...|......+   .... ++++++
T Consensus       122 ~-~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~---~i~G~a~f~~----~~~v~V~~~~~~~---~~~~-i~a~~i  189 (542)
T 4b1b_A          122 D-NLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVK---YINGLAKLKD----KNTVSYYLKGDLS---KEET-VTGKYI  189 (542)
T ss_dssp             E-EEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCE---EECEEEEEEE----TTEEEEEEC--CC---CEEE-EEEEEE
T ss_pred             C-cccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCE---EEeeeEEEcC----CCcceEeecccCC---ceEE-EeeeeE
Confidence            0 0011233444443333           2333433   2222222221    2334444443222   2267 999999


Q ss_pred             EEcccCCCCCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCe
Q 020533          142 VVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVH  221 (325)
Q Consensus       142 IiAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~  221 (325)
                      |+|||  +.|.+|+.++...        ..++.+.+..+ .+..+++++|||+|++|+|+|..++++|.+||++.|+.  
T Consensus       190 iIATG--s~P~~P~~~~~~~--------~~~~ts~~~l~-l~~lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~--  256 (542)
T 4b1b_A          190 LIATG--CRPHIPDDVEGAK--------ELSITSDDIFS-LKKDPGKTLVVGASYVALECSGFLNSLGYDVTVAVRSI--  256 (542)
T ss_dssp             EECCC--EEECCCSSSBTHH--------HHCBCHHHHTT-CSSCCCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSC--
T ss_pred             EeccC--CCCCCCCcccCCC--------ccccCchhhhc-cccCCceEEEECCCHHHHHHHHHHHhcCCeEEEecccc--
Confidence            99999  8898886543322        12344444444 33346899999999999999999999999999998754  


Q ss_pred             eechhhHHHHHHHHh
Q 020533          222 VLSREMVYLGVVLFK  236 (325)
Q Consensus       222 ~~p~~~~~~~~~~~~  236 (325)
                      +||..+.+++..+..
T Consensus       257 ~L~~~D~ei~~~l~~  271 (542)
T 4b1b_A          257 VLRGFDQQCAVKVKL  271 (542)
T ss_dssp             SSTTSCHHHHHHHHH
T ss_pred             cccccchhHHHHHHH
Confidence            688887776655443

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=99.74  E-value=2.6e-18  Score=159.49  Aligned_cols=168  Identities=17%  Similarity=0.261  Sum_probs=113.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHh---cCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSL---QSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF   83 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~---~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (325)
                      .++|+|||||++|+++|..|++   .|.+|+|||+++...       |..             .  ++..........++
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~-------~~~-------------~--~~~~~~g~~~~~~~   61 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQ-------FVP-------------S--NPWVGVGWKERDDI   61 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEE-------CGG-------------G--HHHHHHTSSCHHHH
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCc-------ccC-------------C--ccccccCccCHHHH
Confidence            3699999999999999999999   799999999998431       000             0  00000122344566


Q ss_pred             HHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccc
Q 020533           84 IEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC  163 (325)
Q Consensus        84 ~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~  163 (325)
                      ..++.+.+++.++.   ....+|++++.+.  .  .|++.++       .+ +.||+||+|||  +.|+.|.+||++.+ 
T Consensus        62 ~~~l~~~~~~~gv~---~~~~~v~~id~~~--~--~V~~~~g-------~~-i~~d~lviAtG--~~~~~~~ipG~~~~-  123 (437)
T 3sx6_A           62 AFPIRHYVERKGIH---FIAQSAEQIDAEA--Q--NITLADG-------NT-VHYDYLMIATG--PKLAFENVPGSDPH-  123 (437)
T ss_dssp             EEECHHHHHTTTCE---EECSCEEEEETTT--T--EEEETTS-------CE-EECSEEEECCC--CEECGGGSTTCSTT-
T ss_pred             HHHHHHHHHHCCCE---EEEeEEEEEEcCC--C--EEEECCC-------CE-EECCEEEECCC--CCcCcccCCCCCcc-
Confidence            66677777777765   3457888887653  2  5666654       56 89999999999  67888889998764 


Q ss_pred             cCCCCCccEEecCCCCCCCC--------CCCCeEEEECcCCCH------HHHHHH----HhhccCe-----EEEEEecC
Q 020533          164 SSATGTGEVIHSTQYKNGKP--------YGGKNVLVVGSGNSG------MEIALD----LANHAAK-----TSLVVRSP  219 (325)
Q Consensus       164 ~~~~~~g~~~~~~~~~~~~~--------~~~~~v~VvG~G~s~------~e~a~~----l~~~~~~-----v~~~~r~~  219 (325)
                           .+..++...+.+...        .++++++|||+|.+|      +|+|..    +.+.|.+     |+++.+.+
T Consensus       124 -----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~vVVGgG~~~g~~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~  197 (437)
T 3sx6_A          124 -----EGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEP  197 (437)
T ss_dssp             -----TSSEECCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSS
T ss_pred             -----cCcceecccccHHHHHHHHHHHHHhCCCEEEEEcCCCCCcCcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCc
Confidence                 344444333322111        124567899996654      888844    4455653     99999887

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=99.74  E-value=1.9e-19  Score=169.56  Aligned_cols=187  Identities=12%  Similarity=0.120  Sum_probs=108.0

Q ss_pred             CCCCeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCCCCccC--CCCC-CceEeecCCCccCCCCCCCCC------C
Q 020533            5 AAGVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWK--KYSY-DRLRLHLAKQFCQLPHLPFPS------S   73 (325)
Q Consensus         5 ~~~~~v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~~~Gg~w~--~~~y-~~~~~~~~~~~~~~~~~~~~~------~   73 (325)
                      +..+||+|||||++|+++|..|++.  +.+|+|||+++.++....  ...+ .+...... ....+..++...      .
T Consensus         9 ~~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r~~lsk~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   87 (493)
T 1m6i_A            9 PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVT-KTLRFKQWNGKERSIYFQP   87 (493)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHH-HHCEEECTTSCEEESBSSC
T ss_pred             CCcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCHHhhcCCccchh-hcccccccccccccccccc
Confidence            3457999999999999999999887  789999999987541100  0000 00000000 000000000000      0


Q ss_pred             CCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533           74 YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (325)
Q Consensus        74 ~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~  153 (325)
                      ...+....++.+     ..+.+  ..++++++|.+++...    ++|++.++       .+ +.||+||+|||  +.|+.
T Consensus        88 ~~~~~~~~~l~~-----~~~~g--v~~~~g~~v~~id~~~----~~V~~~~g-------~~-i~yd~lviATG--s~p~~  146 (493)
T 1m6i_A           88 PSFYVSAQDLPH-----IENGG--VAVLTGKKVVQLDVRD----NMVKLNDG-------SQ-ITYEKCLIATG--GTPRS  146 (493)
T ss_dssp             GGGSBCTTTTTT-----STTCE--EEEEETCCEEEEEGGG----TEEEETTS-------CE-EEEEEEEECCC--EEECC
T ss_pred             hHhhcchhhhhh-----hhcCC--eEEEcCCEEEEEECCC----CEEEECCC-------CE-EECCEEEECCC--CCCCC
Confidence            000111111100     11233  4458888999988653    46777653       56 89999999999  67776


Q ss_pred             CCCCCcc--ccccCCCCCccEEecCCCCCC-----CCCCCCeEEEECcCCCHHHHHHHHhh----ccCeEEEEEecC
Q 020533          154 PDIRGLC--SFCSSATGTGEVIHSTQYKNG-----KPYGGKNVLVVGSGNSGMEIALDLAN----HAAKTSLVVRSP  219 (325)
Q Consensus       154 p~~~g~~--~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~v~VvG~G~s~~e~a~~l~~----~~~~v~~~~r~~  219 (325)
                      |++++..  .+      ...+.......+.     ....+++|+|||+|.+|+|+|..|++    .|.+|+++.+.+
T Consensus       147 ~~~~~~~~~~~------~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~  217 (493)
T 1m6i_A          147 LSAIDRAGAEV------KSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEK  217 (493)
T ss_dssp             CHHHHTSCHHH------HHTEEECCSHHHHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCcccccccc------cCceEEEcCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCc
Confidence            6654421  11      1222222211110     11247999999999999999999987    467899998876

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=99.73  E-value=3.7e-18  Score=160.77  Aligned_cols=185  Identities=20%  Similarity=0.286  Sum_probs=108.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      ++++|||||||++|+.+|+.|.+.+++|+|||+++..  .|.           | .+++..        .......++..
T Consensus        41 ~KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~--~~~-----------P-lL~~va--------~G~l~~~~i~~   98 (502)
T 4g6h_A           41 DKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYF--LFT-----------P-LLPSAP--------VGTVDEKSIIE   98 (502)
T ss_dssp             SSCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEE--ECG-----------G-GGGGTT--------TTSSCGGGGEE
T ss_pred             CCCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCc--ccc-----------c-chhHHh--------hccccHHHhhh
Confidence            4578999999999999999999999999999998742  010           0 000000        00011112211


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeec-------------CCCCceeEEEEEeCeEEEcccCCCCCC
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNL-------------LSPGREIEEYYSGRFLVVASGETTNPF  152 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~-------------~~~~~~~~~~~~ad~vIiAtG~~~~p~  152 (325)
                      .+...+....-... +...+|++++.+.  ...++.....             ..+  +..+ +.||+||+|||  +.|+
T Consensus        99 p~~~~~~~~~~~v~-~~~~~v~~ID~~~--k~V~l~~~~~~~~~~~~~~~~~~~~~--~~~~-i~YD~LViAtG--s~~~  170 (502)
T 4g6h_A           99 PIVNFALKKKGNVT-YYEAEATSINPDR--NTVTIKSLSAVSQLYQPENHLGLHQA--EPAE-IKYDYLISAVG--AEPN  170 (502)
T ss_dssp             EHHHHHTTCSSCEE-EEEEEEEEEEGGG--TEEEEEEEEEEEECSSSCCCCCCCTT--CCEE-EECSEEEECCC--CEEC
T ss_pred             hHHHHHHhhcCCeE-EEEEEEEEEEhhh--CEEEEeecccceeecccccccccccC--CceE-EeCCEEEEcCC--cccc
Confidence            22222221111111 3456788887754  4333332110             000  2267 99999999999  7888


Q ss_pred             CCCCCCccccccCCCCCccEEecCC-----------------C-CCC--CCCCCCeEEEECcCCCHHHHHHHHhhcc---
Q 020533          153 TPDIRGLCSFCSSATGTGEVIHSTQ-----------------Y-KNG--KPYGGKNVLVVGSGNSGMEIALDLANHA---  209 (325)
Q Consensus       153 ~p~~~g~~~~~~~~~~~g~~~~~~~-----------------~-~~~--~~~~~~~v~VvG~G~s~~e~a~~l~~~~---  209 (325)
                      .+++||++++       ...+.+..                 . ...  ......+++|||+|.+|+|+|.+|++.+   
T Consensus       171 ~~~ipG~~e~-------a~~l~t~~dA~~ir~~l~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l~~~~~~~  243 (502)
T 4g6h_A          171 TFGIPGVTDY-------GHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQD  243 (502)
T ss_dssp             CTTCTTHHHH-------CEECSSHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHT
T ss_pred             cCCccCcccc-------cCCCCCHHHHHHHHHHHHHHHHHHhcccccchhhccccceEEECCCcchhhhHHHHHHHHHHH
Confidence            8999998653       11111000                 0 000  0012357999999999999999998653   


Q ss_pred             -----------CeEEEEEecCCeeechhhH
Q 020533          210 -----------AKTSLVVRSPVHVLSREMV  228 (325)
Q Consensus       210 -----------~~v~~~~r~~~~~~p~~~~  228 (325)
                                 .+|+++.+.+ .++|....
T Consensus       244 l~~~~~~~~~~~~V~lve~~~-~il~~~~~  272 (502)
T 4g6h_A          244 LRKFLPALAEEVQIHLVEALP-IVLNMFEK  272 (502)
T ss_dssp             HHHHCHHHHHHCEEEEECSSS-SSSTTSCH
T ss_pred             HHhhcccccccceeEEecccc-ccccCCCH
Confidence                       4688888888 45554433

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=99.70  E-value=6.6e-18  Score=171.49  Aligned_cols=171  Identities=18%  Similarity=0.271  Sum_probs=117.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      .+||+|||||++|+++|..|+++|+ +|+|||+.+.+||.+...               .+.         |....++.+
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~~~---------------ip~---------~~~~~~~~~  242 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSE---------------IPQ---------FRLPYDVVN  242 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHT---------------SCT---------TTSCHHHHH
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCcccccc---------------CCc---------ccCCHHHHH
Confidence            5799999999999999999999999 799999999999985421               111         111235667


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCC-CCcccccc
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDI-RGLCSFCS  164 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~-~g~~~~~~  164 (325)
                      +..+.++++++..  ++++.+..         +.+++.+.       .. +.||+||+|||.. .|+.+++ +|++..  
T Consensus       243 ~~~~~~~~~gv~~--~~~~~v~~---------~~v~~~~~-------~~-~~~d~vvlAtGa~-~p~~l~~~~G~~~~--  300 (1025)
T 1gte_A          243 FEIELMKDLGVKI--ICGKSLSE---------NEITLNTL-------KE-EGYKAAFIGIGLP-EPKTDDIFQGLTQD--  300 (1025)
T ss_dssp             HHHHHHHTTTCEE--EESCCBST---------TSBCHHHH-------HH-TTCCEEEECCCCC-EECCCGGGTTCCTT--
T ss_pred             HHHHHHHHCCcEE--EcccEecc---------ceEEhhhc-------Cc-cCCCEEEEecCCC-CCCCCCCCCCCCCC--
Confidence            7777778777554  77765521         12333332       34 6789999999942 4655543 455432  


Q ss_pred             CCCCCccEEecCCC---------------CCCCCCCCCeEEEECcCCCHHHHHHHHhhccC-eEEEEEecCCeeechhhH
Q 020533          165 SATGTGEVIHSTQY---------------KNGKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSPVHVLSREMV  228 (325)
Q Consensus       165 ~~~~~g~~~~~~~~---------------~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~-~v~~~~r~~~~~~p~~~~  228 (325)
                          .+ ++++.++               .......+++|+|||+|++|+|+|..+.+.|. +||+++|++...+|....
T Consensus       301 ----~g-v~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~~~~~~~~~  375 (1025)
T 1gte_A          301 ----QG-FYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPE  375 (1025)
T ss_dssp             ----TT-EEEHHHHHHHHHHHHCBTTBSCCCCCCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCSCHH
T ss_pred             ----CC-EEEhHHHHHHHHhhcccccccccccccccCCcEEEECCChHHHHHHHHHHHcCCCEEEEEEecChhhCCCCHH
Confidence                22 3332221               11112346799999999999999999999996 899999998656665443

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.64  E-value=6.6e-16  Score=145.38  Aligned_cols=153  Identities=17%  Similarity=0.139  Sum_probs=102.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      .+||+|||||++|+++|..|++. .+|+|||+++.+||.|....+.         .+.+         +.  ...++.  
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~~~---------~~g~---------~~--~~~~~~--  164 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKGIK---------QEGF---------NK--DSRKVV--  164 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTCSE---------ETTT---------TE--EHHHHH--
T ss_pred             cCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeeccccc---------cCCC---------CC--CHHHHH--
Confidence            35899999999999999999999 9999999999999987643211         0000         01  233333  


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA  166 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~~  166 (325)
                       ..+.+.+.....++++++|.+++.+.  ..|.+...+..    +... +.+|+||+|||  +.|..|++||.+.     
T Consensus       165 -~~l~~~l~~~v~~~~~~~v~~i~~~~--~~~~~~~~~~~----~~~~-~~~d~lvlAtG--a~~~~~~~~g~~~-----  229 (493)
T 1y56_A          165 -EELVGKLNENTKIYLETSALGVFDKG--EYFLVPVVRGD----KLIE-ILAKRVVLATG--AIDSTMLFENNDM-----  229 (493)
T ss_dssp             -HHHHHTCCTTEEEETTEEECCCEECS--SSEEEEEEETT----EEEE-EEESCEEECCC--EEECCCCCTTTTS-----
T ss_pred             -HHHHHHHhcCCEEEcCCEEEEEEcCC--cEEEEEEecCC----eEEE-EECCEEEECCC--CCccCCCCCCCCC-----
Confidence             33333332234457889998887754  55665543321    2247 89999999999  6777888888753     


Q ss_pred             CCCccEEecCCCC---C-CCCCCCCeEEEECcCCCHHH
Q 020533          167 TGTGEVIHSTQYK---N-GKPYGGKNVLVVGSGNSGME  200 (325)
Q Consensus       167 ~~~g~~~~~~~~~---~-~~~~~~~~v~VvG~G~s~~e  200 (325)
                        .+ +++...+.   + .....+++++|||+|.+|+|
T Consensus       230 --~g-v~~~~~~~~~~~~~~~~~~~~vvViGgG~~gle  264 (493)
T 1y56_A          230 --PG-VFRRDFALEVMNVWEVAPGRKVAVTGSKADEVI  264 (493)
T ss_dssp             --TT-EEEHHHHHHHHHTSCBCSCSEEEEESTTHHHHH
T ss_pred             --CC-EEEcHHHHHHHHhcccCCCCEEEEECCCHHHHH
Confidence              33 33332211   1 12345799999999999998

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.57  E-value=6.6e-15  Score=134.87  Aligned_cols=135  Identities=16%  Similarity=0.163  Sum_probs=88.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC---------CCCCc---eEeecCCCccC----C-----
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK---------YSYDR---LRLHLAKQFCQ----L-----   65 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~---------~~y~~---~~~~~~~~~~~----~-----   65 (325)
                      .+||+|||||++|+++|..|+++|.+|+|+|+++.+|+.|..         +.+..   .....+.....    +     
T Consensus         4 ~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   83 (401)
T 2gqf_A            4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDF   83 (401)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHH
T ss_pred             CCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHHH
Confidence            479999999999999999999999999999999988654321         10100   00000000000    0     


Q ss_pred             ------CCCCC--CCCCCCCC--CHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCC--CCcEEEEEeecCCCCceeE
Q 020533           66 ------PHLPF--PSSYPMFV--SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEA--TNMWNVKASNLLSPGREIE  133 (325)
Q Consensus        66 ------~~~~~--~~~~~~~~--~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~--~~~~~v~~~~~~~~~~~~~  133 (325)
                            ...++  ..+...|+  ...++.+++.+.+++.++.  ++++++|+++..+++  .+.|.|++.+        .
T Consensus        84 ~~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~--i~~~~~v~~i~~~~~g~~~~~~v~~~~--------g  153 (401)
T 2gqf_A           84 ISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAK--ILLRSEVSQVERIQNDEKVRFVLQVNS--------T  153 (401)
T ss_dssp             HHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCE--EECSCCEEEEEECCSCSSCCEEEEETT--------E
T ss_pred             HHHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCE--EEeCCEEEEEEcccCcCCCeEEEEECC--------C
Confidence                  00000  01111122  6788889999999998865  499999999987521  2458777643        4


Q ss_pred             EEEEeCeEEEcccCCCCCC
Q 020533          134 EYYSGRFLVVASGETTNPF  152 (325)
Q Consensus       134 ~~~~ad~vIiAtG~~~~p~  152 (325)
                      + ++||.||+|||.++.|.
T Consensus       154 ~-i~ad~VVlAtG~~s~p~  171 (401)
T 2gqf_A          154 Q-WQCKNLIVATGGLSMPG  171 (401)
T ss_dssp             E-EEESEEEECCCCSSCGG
T ss_pred             E-EECCEEEECCCCccCCC
Confidence            6 89999999999876553

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.43  E-value=6.2e-13  Score=122.25  Aligned_cols=134  Identities=16%  Similarity=0.145  Sum_probs=89.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC------------CCCceEeecCCCcc----CCC---
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY------------SYDRLRLHLAKQFC----QLP---   66 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~------------~y~~~~~~~~~~~~----~~~---   66 (325)
                      ..+||+|||||++|+++|..|++.|.+|+|+|+++.+|+.+...            .........+....    .+.   
T Consensus        26 ~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~~~  105 (417)
T 3v76_A           26 EKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRPQD  105 (417)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCHHH
Confidence            35799999999999999999999999999999999887644110            00000000000000    000   


Q ss_pred             --------CCCC--CCCCCC--CCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEE
Q 020533           67 --------HLPF--PSSYPM--FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEE  134 (325)
Q Consensus        67 --------~~~~--~~~~~~--~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~  134 (325)
                              ..++  ......  .....++.+++.+.+++.++..  +++++|++++.++  +.|.|.+.+        .+
T Consensus       106 ~~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i--~~~~~V~~i~~~~--~~~~V~~~~--------g~  173 (417)
T 3v76_A          106 FVALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQL--RLETSIGEVERTA--SGFRVTTSA--------GT  173 (417)
T ss_dssp             HHHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEE--ECSCCEEEEEEET--TEEEEEETT--------EE
T ss_pred             HHHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEE--EECCEEEEEEEeC--CEEEEEECC--------cE
Confidence                    0000  000001  1356789999999999888654  9999999998765  568887764        46


Q ss_pred             EEEeCeEEEcccCCCCCC
Q 020533          135 YYSGRFLVVASGETTNPF  152 (325)
Q Consensus       135 ~~~ad~vIiAtG~~~~p~  152 (325)
                       +.||.||+|+|.++.|.
T Consensus       174 -i~ad~VIlAtG~~S~p~  190 (417)
T 3v76_A          174 -VDAASLVVASGGKSIPK  190 (417)
T ss_dssp             -EEESEEEECCCCSSCGG
T ss_pred             -EEeeEEEECCCCccCCC
Confidence             89999999999887554

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=99.43  E-value=1.5e-13  Score=125.94  Aligned_cols=116  Identities=22%  Similarity=0.235  Sum_probs=72.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcC--CCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI   84 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g--~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (325)
                      .++|+|||||++|+++|.+|++.+  .+|+|||+++.......             ...-..         ...+.+++.
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~-------------~~~v~~---------g~~~~~~~~   59 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYM-------------SNEVIG---------GDRELASLR   59 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTT-------------HHHHHH---------TSSCGGGGE
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccC-------------HHHHhc---------CCCCHHHHh
Confidence            468999999999999999999876  58999999875221000             000000         000000110


Q ss_pred             HHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCcccc
Q 020533           85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSF  162 (325)
Q Consensus        85 ~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~  162 (325)
                      .-+.+ +...++.   +...+|++++.+.    -.|.+.++       .+ +.||+||+|||  +.+..+.+||+++.
T Consensus        60 ~~~~~-~~~~gv~---~i~~~v~~id~~~----~~v~~~~g-------~~-i~yd~LviAtG--~~~~~~~i~G~~e~  119 (401)
T 3vrd_B           60 VGYDG-LRAHGIQ---VVHDSALGIDPDK----KLVKTAGG-------AE-FAYDRCVVAPG--IDLLYDKIEGYSEA  119 (401)
T ss_dssp             ECSHH-HHHTTCE---EECSCEEEEETTT----TEEEETTS-------CE-EECSEEEECCC--EEECGGGSBTCCSG
T ss_pred             hCHHH-HHHCCCE---EEEeEEEEEEccC----cEEEeccc-------ce-eecceeeeccC--CccccCCccCchhh
Confidence            01111 2234554   4556788887654    24666554       57 89999999999  77888889998754

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=99.38  E-value=2.6e-12  Score=116.80  Aligned_cols=135  Identities=13%  Similarity=0.116  Sum_probs=86.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC----------------------CCCceEeecCCCccC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY----------------------SYDRLRLHLAKQFCQ   64 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~----------------------~y~~~~~~~~~~~~~   64 (325)
                      +|||+||||||+|+++|..|+++|++|+||||++.+|......                      ...+.++..+.....
T Consensus         4 ~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (397)
T 3oz2_A            4 TYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVKGARIYGPSEKRP   83 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEESEEEEECTTCSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCHHHHHHcCCCchhhhhhcccceEEEEeCCCceE
Confidence            4899999999999999999999999999999988765321100                      011222222211100


Q ss_pred             C--CCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEE
Q 020533           65 L--PHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLV  142 (325)
Q Consensus        65 ~--~~~~~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vI  142 (325)
                      .  ..............+.++.++|.+.+.+.|...  +++++|+++..++  +..........+   +..+ +++|.||
T Consensus        84 ~~~~~~~~~~~~~~~i~R~~~~~~L~~~a~~~G~~~--~~~~~v~~~~~~~--~~~~~v~~~~~~---~~~~-~~a~~vI  155 (397)
T 3oz2_A           84 IILQSEKAGNEVGYVLERDKFDKHLAALAAKAGADV--WVKSPALGVIKEN--GKVAGAKIRHNN---EIVD-VRAKMVI  155 (397)
T ss_dssp             EEEECSSSSCCCEEEECHHHHHHHHHHHHHHHTCEE--ESSCCEEEEEEET--TEEEEEEEEETT---EEEE-EEEEEEE
T ss_pred             eeccccccCCceeEEEEHHHHHHHHHHHHHhcCcEE--eeeeeeeeeeecc--ceeeeeeecccc---cceE-EEEeEEE
Confidence            0  000000011122578899999999999988655  9999999987765  333322222211   3367 8999999


Q ss_pred             EcccCCC
Q 020533          143 VASGETT  149 (325)
Q Consensus       143 iAtG~~~  149 (325)
                      .|+|.+|
T Consensus       156 gAdG~~S  162 (397)
T 3oz2_A          156 AADGFES  162 (397)
T ss_dssp             ECCCTTC
T ss_pred             eCCcccc
Confidence            9999765

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.37  E-value=1.9e-12  Score=104.99  Aligned_cols=117  Identities=20%  Similarity=0.281  Sum_probs=83.7

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHHH
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHL   87 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl   87 (325)
                      +||+|||||++|+.+|..|++.|.+|+++|+.+..-..+             ..+..++.+      +......++.+++
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~-------------~~~~~~~~~------~~~~~~~~~~~~l   62 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGV-------------SRVPNYPGL------LDEPSGEELLRRL   62 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTC-------------SCCCCSTTC------TTCCCHHHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCc-------------hhhhccCCC------cCCCCHHHHHHHH
Confidence            689999999999999999999999999999987321100             000011111      1224578999999


Q ss_pred             HHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCc
Q 020533           88 DHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGL  159 (325)
Q Consensus        88 ~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~  159 (325)
                      .+.+++.++..  +++ +|++++.++  +.|.+++.+        .+ +.+|.||+|+|.  .|.++...|+
T Consensus        63 ~~~~~~~gv~v--~~~-~v~~i~~~~--~~~~v~~~~--------g~-i~ad~vI~A~G~--~~~~~~~~g~  118 (180)
T 2ywl_A           63 EAHARRYGAEV--RPG-VVKGVRDMG--GVFEVETEE--------GV-EKAERLLLCTHK--DPTLPSLLGL  118 (180)
T ss_dssp             HHHHHHTTCEE--EEC-CCCEEEECS--SSEEEECSS--------CE-EEEEEEEECCTT--CCHHHHHHTC
T ss_pred             HHHHHHcCCEE--EeC-EEEEEEEcC--CEEEEEECC--------CE-EEECEEEECCCC--CCCccccCCC
Confidence            99999998654  888 899998764  458777654        25 899999999994  4544333343

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=99.36  E-value=4.1e-12  Score=119.63  Aligned_cols=137  Identities=20%  Similarity=0.197  Sum_probs=90.4

Q ss_pred             CCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC--------------CCCCceEeecCCCccCCCC--
Q 020533            4 QAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK--------------YSYDRLRLHLAKQFCQLPH--   67 (325)
Q Consensus         4 ~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~--------------~~y~~~~~~~~~~~~~~~~--   67 (325)
                      .+..+||+||||||+||++|..|++.|++|+|||+.+.++..-+.              ...+.+.-..+.....+..  
T Consensus         8 ~~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~   87 (500)
T 2qa1_A            8 HRSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGGLP   87 (500)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEETTEE
T ss_pred             ccCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhcccccccccccee
Confidence            445689999999999999999999999999999998765421110              0000000000000000000  


Q ss_pred             C---CCCCC--CCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEE
Q 020533           68 L---PFPSS--YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLV  142 (325)
Q Consensus        68 ~---~~~~~--~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vI  142 (325)
                      +   .....  .....++..+.++|.+.+.+.++.  ++++++|++++.++  +.++|++.++.+    ..+ +++|+||
T Consensus        88 ~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~--~~v~v~~~~~~g----~~~-~~a~~vV  158 (500)
T 2qa1_A           88 IDFGVLEGAWQAAKTVPQSVTETHLEQWATGLGAD--IRRGHEVLSLTDDG--AGVTVEVRGPEG----KHT-LRAAYLV  158 (500)
T ss_dssp             EEGGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCE--EEETCEEEEEEEET--TEEEEEEEETTE----EEE-EEESEEE
T ss_pred             cccccCCCCCCceeecCHHHHHHHHHHHHHHCCCE--EECCcEEEEEEEcC--CeEEEEEEcCCC----CEE-EEeCEEE
Confidence            0   00000  112346789999999999988754  59999999998875  568888876532    157 8999999


Q ss_pred             EcccCCC
Q 020533          143 VASGETT  149 (325)
Q Consensus       143 iAtG~~~  149 (325)
                      .|+|.+|
T Consensus       159 gADG~~S  165 (500)
T 2qa1_A          159 GCDGGRS  165 (500)
T ss_dssp             ECCCTTC
T ss_pred             ECCCcch
Confidence            9999876

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=99.36  E-value=7.3e-12  Score=115.24  Aligned_cols=135  Identities=16%  Similarity=0.219  Sum_probs=88.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC----CCCccCCCC--------------------CCceEeecCCCc
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC----YASIWKKYS--------------------YDRLRLHLAKQF   62 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~----~Gg~w~~~~--------------------y~~~~~~~~~~~   62 (325)
                      .+||+|||||++|+++|..|++.|++|+|+|+.+.    .|.......                    ..+.........
T Consensus         5 ~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   84 (421)
T 3nix_A            5 KVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGESLLPRCMEHLDEAGFLDAVKAQGFQQKFGAKFVRGKEI   84 (421)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCGGGHHHHHHTTCHHHHHHTTCEEECEEEEEETTEE
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccCcccHhHHHHHHHcCChHHHHHcCCcccCCcEEEeCCee
Confidence            47999999999999999999999999999999863    332221110                    011121111111


Q ss_pred             cC--CCCCCC-CCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeC
Q 020533           63 CQ--LPHLPF-PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGR  139 (325)
Q Consensus        63 ~~--~~~~~~-~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad  139 (325)
                      ..  +..... .........+..+.++|.+.+++.|+.  ++++++|++++.++  +.+.+.+...++   +..+ +.+|
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv~--i~~~~~v~~i~~~~--~~~~v~v~~~~g---~~~~-~~a~  156 (421)
T 3nix_A           85 ADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVD--VEYEVGVTDIKFFG--TDSVTTIEDING---NKRE-IEAR  156 (421)
T ss_dssp             EEEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTCE--EECSEEEEEEEEET--TEEEEEEEETTS---CEEE-EEEE
T ss_pred             EEEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEeC--CEEEEEEEcCCC---CEEE-EEcC
Confidence            11  111000 011123467889999999999988865  49999999998875  456555544322   2247 9999


Q ss_pred             eEEEcccCCC
Q 020533          140 FLVVASGETT  149 (325)
Q Consensus       140 ~vIiAtG~~~  149 (325)
                      .||.|+|.++
T Consensus       157 ~vV~A~G~~s  166 (421)
T 3nix_A          157 FIIDASGYGR  166 (421)
T ss_dssp             EEEECCGGGC
T ss_pred             EEEECCCCch
Confidence            9999999765

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=99.35  E-value=1.9e-14  Score=133.20  Aligned_cols=115  Identities=21%  Similarity=0.248  Sum_probs=69.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhcC--CCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            8 VEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g--~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      ++|+|||||++|+++|..|++.+  .+|+|||+++...       |.........               ...+.+++..
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~-------~~p~l~~v~~---------------g~~~~~~i~~   60 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFG-------FTPAFPHLAM---------------GWRKFEDISV   60 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEE-------CGGGHHHHHH---------------TCSCGGGSEE
T ss_pred             CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCc-------cCccHHHHhc---------------CCCCHHHhhh
Confidence            47999999999999999999875  6899999987421       1000000000               0000001111


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCcccc
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSF  162 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~  162 (325)
                      .+.+.+++.++.   ....+|++++.+.    -+|+++++       .+ +.||+||+|||.  .+. +++||.++.
T Consensus        61 ~~~~~~~~~gv~---~i~~~v~~Id~~~----~~V~~~~g-------~~-i~YD~LViAtG~--~~~-~~i~G~~e~  119 (430)
T 3hyw_A           61 PLAPLLPKFNIE---FINEKAESIDPDA----NTVTTQSG-------KK-IEYDYLVIATGP--KLV-FGAEGQEEN  119 (430)
T ss_dssp             ESTTTGGGGTEE---EECSCEEEEETTT----TEEEETTC-------CE-EECSEEEECCCC--EEE-CCSBTHHHH
T ss_pred             cHHHHHHHCCcE---EEEeEEEEEECCC----CEEEECCC-------CE-EECCEEEEeCCC--Ccc-CCccCcccC
Confidence            112223344543   3445788887654    35777664       57 899999999994  443 468887653

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=99.35  E-value=3.7e-12  Score=121.67  Aligned_cols=134  Identities=15%  Similarity=0.081  Sum_probs=87.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCC-------------------CCceEee---cCCC---
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYS-------------------YDRLRLH---LAKQ---   61 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~-------------------y~~~~~~---~~~~---   61 (325)
                      .+||+|||||++||++|..|++.|++|+|||+.+......+...                   -......   ....   
T Consensus        49 ~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~  128 (570)
T 3fmw_A           49 TTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGIFTQ  128 (570)
T ss_dssp             --CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTBCTT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCcccc
Confidence            57999999999999999999999999999999876542111100                   0000000   0000   


Q ss_pred             ccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeE
Q 020533           62 FCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFL  141 (325)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~v  141 (325)
                      ...+.....+........+..+.+.|.+.+++.++..  +++++|++++.++  +.++|++...++   + .+ +++|+|
T Consensus       129 ~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i--~~~~~v~~l~~~~--~~v~v~~~~~~G---~-~~-~~a~~v  199 (570)
T 3fmw_A          129 GLDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEI--PRGHEVTRLRQDA--EAVEVTVAGPSG---P-YP-VRARYG  199 (570)
T ss_dssp             CCBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEEC--CBSCEEEECCBCS--SCEEEEEEETTE---E-EE-EEESEE
T ss_pred             cccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEE--EeCCEEEEEEEcC--CeEEEEEEeCCC---c-EE-EEeCEE
Confidence            0111111111111234688999999999998887554  9999999998765  668888754321   1 46 899999


Q ss_pred             EEcccCCC
Q 020533          142 VVASGETT  149 (325)
Q Consensus       142 IiAtG~~~  149 (325)
                      |.|+|.+|
T Consensus       200 V~ADG~~S  207 (570)
T 3fmw_A          200 VGCDGGRS  207 (570)
T ss_dssp             EECSCSSC
T ss_pred             EEcCCCCc
Confidence            99999776

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=99.34  E-value=2.4e-12  Score=118.04  Aligned_cols=131  Identities=22%  Similarity=0.299  Sum_probs=86.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCc-------------------cCC-----CCCCceEeecCC-
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI-------------------WKK-----YSYDRLRLHLAK-   60 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~-------------------w~~-----~~y~~~~~~~~~-   60 (325)
                      .++||+|||||++||++|..|++.|++|+|||+.+.++..                   |..     .....+...... 
T Consensus        22 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~  101 (407)
T 3rp8_A           22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRDFRS  101 (407)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEEEETTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEEEECCC
Confidence            4689999999999999999999999999999998765311                   100     011122221111 


Q ss_pred             --CccCCCCCCCC---CCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEE
Q 020533           61 --QFCQLPHLPFP---SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY  135 (325)
Q Consensus        61 --~~~~~~~~~~~---~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~  135 (325)
                        ....++.....   ........+.++.++|.+.+.+    ..++++++|++++.++  +.|+|++.++       .+ 
T Consensus       102 g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~----~~i~~~~~v~~i~~~~--~~v~v~~~~g-------~~-  167 (407)
T 3rp8_A          102 GENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR----DSVQFGKRVTRCEEDA--DGVTVWFTDG-------SS-  167 (407)
T ss_dssp             CCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG----GGEEESCCEEEEEEET--TEEEEEETTS-------CE-
T ss_pred             CCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc----CEEEECCEEEEEEecC--CcEEEEEcCC-------CE-
Confidence              11111100000   0112235678899999988876    4569999999998876  6788888764       46 


Q ss_pred             EEeCeEEEcccCCCC
Q 020533          136 YSGRFLVVASGETTN  150 (325)
Q Consensus       136 ~~ad~vIiAtG~~~~  150 (325)
                      +.+|.||.|+|.+|.
T Consensus       168 ~~a~~vV~AdG~~S~  182 (407)
T 3rp8_A          168 ASGDLLIAADGSHSA  182 (407)
T ss_dssp             EEESEEEECCCTTCS
T ss_pred             EeeCEEEECCCcChH
Confidence            899999999998764

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.34  E-value=1.2e-12  Score=117.39  Aligned_cols=128  Identities=16%  Similarity=0.245  Sum_probs=85.5

Q ss_pred             CeEEEECCChHHHHHHHHHHh---cCCCeEEEecCCCCCCccCCCC---CCceEeecCCCccCCCCC-------------
Q 020533            8 VEVIMVGAGTSGLATAACLSL---QSIPYVILERENCYASIWKKYS---YDRLRLHLAKQFCQLPHL-------------   68 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~---~g~~v~v~e~~~~~Gg~w~~~~---y~~~~~~~~~~~~~~~~~-------------   68 (325)
                      +||+|||||++|+++|..|++   .|++|+||||++.+||.|....   +.....+....++.....             
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~   81 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYDELL   81 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHHHHH
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHHHHH
Confidence            589999999999999999999   8999999999999999766432   222333322222100000             


Q ss_pred             ------CCC---------CCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeE
Q 020533           69 ------PFP---------SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIE  133 (325)
Q Consensus        69 ------~~~---------~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~  133 (325)
                            ++.         +....|.....+..+++.+++..+.  .|+++++|+++++++  +.|+|++.++       .
T Consensus        82 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~--~i~~~~~V~~i~~~~--~~~~v~~~~g-------~  150 (342)
T 3qj4_A           82 AYGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKESGA--EVYFRHRVTQINLRD--DKWEVSKQTG-------S  150 (342)
T ss_dssp             HTTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHHHTC--EEESSCCEEEEEECS--SSEEEEESSS-------C
T ss_pred             hCCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHhcCC--EEEeCCEEEEEEEcC--CEEEEEECCC-------C
Confidence                  000         0001122233344556666666664  459999999999865  6799988764       4


Q ss_pred             EEEEeCeEEEcccC
Q 020533          134 EYYSGRFLVVASGE  147 (325)
Q Consensus       134 ~~~~ad~vIiAtG~  147 (325)
                      . +.||.||+|+..
T Consensus       151 ~-~~ad~vV~A~p~  163 (342)
T 3qj4_A          151 P-EQFDLIVLTMPV  163 (342)
T ss_dssp             C-EEESEEEECSCH
T ss_pred             E-EEcCEEEECCCH
Confidence            5 789999999984

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=99.33  E-value=7.1e-12  Score=117.98  Aligned_cols=136  Identities=15%  Similarity=0.135  Sum_probs=89.9

Q ss_pred             CCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC--------------CCCce----Eee---cCCCcc
Q 020533            5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY--------------SYDRL----RLH---LAKQFC   63 (325)
Q Consensus         5 ~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~--------------~y~~~----~~~---~~~~~~   63 (325)
                      ...+||+||||||+||++|..|++.|++|+|||+.+..+...+..              ..+.+    ...   ......
T Consensus        10 ~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~   89 (499)
T 2qa2_A           10 RSDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGGRPV   89 (499)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETTEEE
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceecceec
Confidence            346899999999999999999999999999999987654211110              00000    000   000000


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEE
Q 020533           64 QLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVV  143 (325)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIi  143 (325)
                      .+.....+.......++..+.+.|.+.+.+.++.  ++++++|++++.++  +.++|++.++.+   + .+ +++|+||.
T Consensus        90 ~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~--~~v~v~~~~~~g---~-~~-~~a~~vVg  160 (499)
T 2qa2_A           90 DFGVLEGAHYGVKAVPQSTTESVLEEWALGRGAE--LLRGHTVRALTDEG--DHVVVEVEGPDG---P-RS-LTTRYVVG  160 (499)
T ss_dssp             EGGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCE--EEESCEEEEEEECS--SCEEEEEECSSC---E-EE-EEEEEEEE
T ss_pred             ccccCCCCCCceEecCHHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEeC--CEEEEEEEcCCC---c-EE-EEeCEEEE
Confidence            0000000000112346889999999999988754  59999999998865  568888876532   1 57 89999999


Q ss_pred             cccCCC
Q 020533          144 ASGETT  149 (325)
Q Consensus       144 AtG~~~  149 (325)
                      |+|.+|
T Consensus       161 ADG~~S  166 (499)
T 2qa2_A          161 CDGGRS  166 (499)
T ss_dssp             CCCTTC
T ss_pred             ccCccc
Confidence            999876

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.32  E-value=1.1e-12  Score=123.47  Aligned_cols=139  Identities=16%  Similarity=0.122  Sum_probs=89.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCC-Cc-cCCCCCCCCCCCCCCCCHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAK-QF-CQLPHLPFPSSYPMFVSRAQF   83 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~   83 (325)
                      ..+||+|||||++|+++|..|++.|++|+|+|+++.+|+....+.++...-.... .. .....+..  ......++.++
T Consensus        91 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~--~~~~~~~~~~l  168 (497)
T 2bry_A           91 TNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCT--GTLDHISIRQL  168 (497)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTC--TTCCEEEHHHH
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccc--cccccCCHHHH
Confidence            4689999999999999999999999999999999887753211111100000000 00 00000000  00112456889


Q ss_pred             HHHHHHHHHHcCCCceeeeCeEEEEEEEcC-CCCcEEEEEeec-CCCCceeEEEEEeCeEEEcccCCCCCC
Q 020533           84 IEHLDHYVSHFNIGPSIRYQRSVESASYDE-ATNMWNVKASNL-LSPGREIEEYYSGRFLVVASGETTNPF  152 (325)
Q Consensus        84 ~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~-~~~~~~v~~~~~-~~~~~~~~~~~~ad~vIiAtG~~~~p~  152 (325)
                      .++|.+.+++.++.  ++++++|++++.++ +.+.|.|++.+. ++   +..+ +.+|+||+|+|..+.++
T Consensus       169 ~~~L~~~~~~~gv~--v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g---~~~~-i~ad~VV~A~G~~S~~r  233 (497)
T 2bry_A          169 QLLLLKVALLLGVE--IHWGVKFTGLQPPPRKGSGWRAQLQPNPPA---QLAS-YEFDVLISAAGGKFVPE  233 (497)
T ss_dssp             HHHHHHHHHHTTCE--EEESCEEEEEECCCSTTCCBEEEEESCCCH---HHHT-CCBSEEEECCCTTCCCT
T ss_pred             HHHHHHHHHhCCCE--EEeCCEEEEEEEecCCCCEEEEEEEECCCC---CEEE-EEcCEEEECCCCCcccc
Confidence            99999999887754  59999999998752 235688887432 11   1135 88999999999766543

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=99.30  E-value=2.1e-11  Score=115.20  Aligned_cols=142  Identities=20%  Similarity=0.265  Sum_probs=87.5

Q ss_pred             CCCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC----CCCCccCCC------------------CCCc---eE
Q 020533            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN----CYASIWKKY------------------SYDR---LR   55 (325)
Q Consensus         1 M~~~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~----~~Gg~w~~~------------------~y~~---~~   55 (325)
                      |+....++||+|||||++|+++|..|++.|++|+|+|+.+    ..|..+...                  .+..   ..
T Consensus         1 M~~~~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~   80 (512)
T 3e1t_A            1 MSTRPEVFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGT   80 (512)
T ss_dssp             ----CEEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEE
T ss_pred             CCCCCccCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCce
Confidence            5544456899999999999999999999999999999987    333221110                  0000   00


Q ss_pred             eecCCC----ccCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcE-EEEEeecCCCC
Q 020533           56 LHLAKQ----FCQLPHLPF-PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMW-NVKASNLLSPG  129 (325)
Q Consensus        56 ~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~-~v~~~~~~~~~  129 (325)
                      ......    ...+...+. .........+..+.++|.+.+++.++.  ++++++|+++..++  +.. .|.+...++  
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~--i~~~~~V~~v~~~~--~~v~gv~~~~~dG--  154 (512)
T 3e1t_A           81 FRWGKEPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVD--VRERHEVIDVLFEG--ERAVGVRYRNTEG--  154 (512)
T ss_dssp             EECSSCSSCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCE--EESSCEEEEEEEET--TEEEEEEEECSSS--
T ss_pred             EEecCCccccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEEC--CEEEEEEEEeCCC--
Confidence            000000    001111110 011112367889999999999988754  49999999998864  433 244443222  


Q ss_pred             ceeEEEEEeCeEEEcccCCCC
Q 020533          130 REIEEYYSGRFLVVASGETTN  150 (325)
Q Consensus       130 ~~~~~~~~ad~vIiAtG~~~~  150 (325)
                       +..+ +.+|.||.|+|.++.
T Consensus       155 -~~~~-i~ad~VI~AdG~~S~  173 (512)
T 3e1t_A          155 -VELM-AHARFIVDASGNRTR  173 (512)
T ss_dssp             -CEEE-EEEEEEEECCCTTCS
T ss_pred             -CEEE-EEcCEEEECCCcchH
Confidence             2257 899999999997653

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=99.30  E-value=5.7e-12  Score=120.38  Aligned_cols=169  Identities=14%  Similarity=0.172  Sum_probs=100.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC-CCCCccCCCCCCceEee-----------cCCCc--------cCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN-CYASIWKKYSYDRLRLH-----------LAKQF--------CQL   65 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~-~~Gg~w~~~~y~~~~~~-----------~~~~~--------~~~   65 (325)
                      ..+||+|||||++|+++|..|++.|.+|+|+|++. .+|...   +.+.....           ....+        ..+
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~---Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f  103 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMS---CNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQF  103 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCS---SSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEE
T ss_pred             CcCCEEEECChHHHHHHHHHHHhCCCCEEEEeeccccccccc---ccccccchhhHHHHHHHHHhccHHHHHhhhcccch
Confidence            35899999999999999999999999999999984 344211   01110000           00000        000


Q ss_pred             CCC---CCCCC--CCCCCCHHHHHHHHHHHHHH-cCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeC
Q 020533           66 PHL---PFPSS--YPMFVSRAQFIEHLDHYVSH-FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGR  139 (325)
Q Consensus        66 ~~~---~~~~~--~~~~~~~~~~~~yl~~~a~~-~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad  139 (325)
                      ...   ..+..  ......+..+.+++.+.+++ .++.  + ++++|+.+..++ +..+.|.+.++       .. +.||
T Consensus       104 ~~l~~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~--I-~~~~V~~L~~e~-g~V~GV~t~dG-------~~-I~Ad  171 (651)
T 3ces_A          104 RILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLM--I-FQQAVEDLIVEN-DRVVGAVTQMG-------LK-FRAK  171 (651)
T ss_dssp             EEESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEE--E-EECCEEEEEESS-SBEEEEEETTS-------EE-EEEE
T ss_pred             hhhhcccCcccccchhhCCHHHHHHHHHHHHHhCCCCE--E-EEEEEEEEEecC-CEEEEEEECCC-------CE-EECC
Confidence            000   00000  00123456788888888887 4644  3 677899887654 23345666543       57 8999


Q ss_pred             eEEEcccCCCCCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEe
Q 020533          140 FLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVR  217 (325)
Q Consensus       140 ~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r  217 (325)
                      .||+|||.+  +..+.++|...+      .                +.+   +| |.++.+++..|.+.|.+|+.+..
T Consensus       172 ~VVLATGt~--s~~~~i~G~~~~------~----------------~gr---iG-g~~a~eLA~~L~~lG~~v~~~~t  221 (651)
T 3ces_A          172 AVVLTVGTF--LDGKIHIGLDNY------S----------------GGR---AG-DPPSIPLSRRLRELPLRVGRLKT  221 (651)
T ss_dssp             EEEECCSTT--TCCEEECC---------------------------------------CCHHHHHHHTTTCCEEEECC
T ss_pred             EEEEcCCCC--ccCccccCcccC------C----------------CCC---cc-chhhhHHHHHHHhcCCeEEEecC
Confidence            999999954  444456666543      1                122   56 78899999999999999988753

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=99.30  E-value=3.2e-11  Score=116.86  Aligned_cols=146  Identities=18%  Similarity=0.243  Sum_probs=93.8

Q ss_pred             CCCCCCCCeEEEECCChHHHHHHHHHHh-cCCCeEEEecCCCCCCccCCCC------------------------CCceE
Q 020533            1 MKEQAAGVEVIMVGAGTSGLATAACLSL-QSIPYVILERENCYASIWKKYS------------------------YDRLR   55 (325)
Q Consensus         1 M~~~~~~~~v~IIGaG~~Gl~~a~~L~~-~g~~v~v~e~~~~~Gg~w~~~~------------------------y~~~~   55 (325)
                      |..++..+||+||||||+||++|..|++ .|++|+||||.+..+...+...                        .....
T Consensus        26 m~~~~~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~~~~~~~~~~~~~~~  105 (639)
T 2dkh_A           26 TEAVPSQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADSILKEACWINDVT  105 (639)
T ss_dssp             CSSCCSEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCHHHHHHHSEEECEEE
T ss_pred             cCCCCCCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcHHHHHHhcccccceE
Confidence            3333345799999999999999999999 9999999999876543222100                        01111


Q ss_pred             eecC-----CCcc---CCCCCC--CCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCC--CCcEEEEEe
Q 020533           56 LHLA-----KQFC---QLPHLP--FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEA--TNMWNVKAS  123 (325)
Q Consensus        56 ~~~~-----~~~~---~~~~~~--~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~--~~~~~v~~~  123 (325)
                      ...+     ....   .++...  .........++..+.++|.+.+.+.+....++++++|++++.+++  ...++|+++
T Consensus       106 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~  185 (639)
T 2dkh_A          106 FWKPDPGQPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLE  185 (639)
T ss_dssp             EEEECTTSTTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEE
T ss_pred             EECCCCCCCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEE
Confidence            1110     0000   000000  000011235788999999999999876334599999999988652  235888776


Q ss_pred             e----cCCCCceeEEEEEeCeEEEcccCCCC
Q 020533          124 N----LLSPGREIEEYYSGRFLVVASGETTN  150 (325)
Q Consensus       124 ~----~~~~~~~~~~~~~ad~vIiAtG~~~~  150 (325)
                      +    .++   +..+ +++|+||.|+|.+|.
T Consensus       186 ~~~~~~~G---~~~~-i~a~~vVgADG~~S~  212 (639)
T 2dkh_A          186 RCDAAHAG---QIET-VQARYVVGCDGARSN  212 (639)
T ss_dssp             ECSGGGTT---CEEE-EEEEEEEECCCTTCH
T ss_pred             eccccCCC---CeEE-EEeCEEEECCCcchH
Confidence            5    122   2257 899999999998763

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=99.30  E-value=1.4e-11  Score=117.17  Aligned_cols=136  Identities=18%  Similarity=0.185  Sum_probs=90.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCC------------------------CC---ce---Ee
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYS------------------------YD---RL---RL   56 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~------------------------y~---~~---~~   56 (325)
                      ++||+|||||++||++|..|+++|++|+|||+++..+..-+...                        +.   ..   ..
T Consensus         5 ~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~   84 (535)
T 3ihg_A            5 EVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEVVRADDIRGTQGDFVIRLA   84 (535)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCHHHHHHSCCSSCTTSCCEEEEE
T ss_pred             cCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHcCCHHHHHhhCCCcccccceeeeEE
Confidence            57999999999999999999999999999999876542111100                        00   00   00


Q ss_pred             ec--CCCcc----CCCC-----CCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCC--cEEEEEe
Q 020533           57 HL--AKQFC----QLPH-----LPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATN--MWNVKAS  123 (325)
Q Consensus        57 ~~--~~~~~----~~~~-----~~~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~--~~~v~~~  123 (325)
                      ..  ...+.    .+..     ...........++..+.++|.+.+.+.++.  ++++++|++++.+++..  .+++++.
T Consensus        85 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~--i~~~~~v~~i~~~~~~~~~~v~v~~~  162 (535)
T 3ihg_A           85 ESVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARKHGGA--IRFGTRLLSFRQHDDDAGAGVTARLA  162 (535)
T ss_dssp             SSSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHHTTCE--EESSCEEEEEEEECGGGCSEEEEEEE
T ss_pred             eccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHhCCCE--EEeCCEEEEEEECCCCccccEEEEEE
Confidence            00  00000    0000     000001123467899999999999998754  59999999998875211  7888887


Q ss_pred             ecCCCCceeEEEEEeCeEEEcccCCC
Q 020533          124 NLLSPGREIEEYYSGRFLVVASGETT  149 (325)
Q Consensus       124 ~~~~~~~~~~~~~~ad~vIiAtG~~~  149 (325)
                      ++++    ..+ ++||+||.|+|.+|
T Consensus       163 ~~~~----~~~-i~a~~vV~AdG~~S  183 (535)
T 3ihg_A          163 GPDG----EYD-LRAGYLVGADGNRS  183 (535)
T ss_dssp             ETTE----EEE-EEEEEEEECCCTTC
T ss_pred             cCCC----eEE-EEeCEEEECCCCcc
Confidence            6532    267 89999999999876

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=99.29  E-value=1.1e-11  Score=113.47  Aligned_cols=130  Identities=14%  Similarity=0.170  Sum_probs=83.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC-----CCccCCCCCCce---------------------EeecC-
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY-----ASIWKKYSYDRL---------------------RLHLA-   59 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~-----Gg~w~~~~y~~~---------------------~~~~~-   59 (325)
                      .+||+|||||++|+++|..|++.|++|+|||+++.+     |+.|........                     ..... 
T Consensus        26 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~  105 (398)
T 2xdo_A           26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIADEK  105 (398)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCEEEECSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccceEEECCC
Confidence            579999999999999999999999999999998753     333321100000                     00000 


Q ss_pred             C-CccCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEE
Q 020533           60 K-QFCQLPHLPFP-SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS  137 (325)
Q Consensus        60 ~-~~~~~~~~~~~-~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~  137 (325)
                      . ...... .+.. ........+.++.++|.+.+..    ..++++++|++++.++  +.|+|++.++       .+ +.
T Consensus       106 g~~~~~~~-~~~~~~~~~~~i~r~~l~~~L~~~~~~----~~i~~~~~v~~i~~~~--~~v~v~~~~g-------~~-~~  170 (398)
T 2xdo_A          106 GNILSTKN-VKPENRFDNPEINRNDLRAILLNSLEN----DTVIWDRKLVMLEPGK--KKWTLTFENK-------PS-ET  170 (398)
T ss_dssp             SEEEEECC-CGGGTTSSCCEECHHHHHHHHHHTSCT----TSEEESCCEEEEEECS--SSEEEEETTS-------CC-EE
T ss_pred             CCchhhcc-ccccCCCCCceECHHHHHHHHHhhcCC----CEEEECCEEEEEEECC--CEEEEEECCC-------cE-Ee
Confidence            0 000000 0000 0011234677888888765542    3469999999998865  5788888764       45 89


Q ss_pred             eCeEEEcccCCCCC
Q 020533          138 GRFLVVASGETTNP  151 (325)
Q Consensus       138 ad~vIiAtG~~~~p  151 (325)
                      +|.||.|+|.++..
T Consensus       171 ad~vV~AdG~~S~v  184 (398)
T 2xdo_A          171 ADLVILANGGMSKV  184 (398)
T ss_dssp             ESEEEECSCTTCSC
T ss_pred             cCEEEECCCcchhH
Confidence            99999999987643

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.29  E-value=8.9e-12  Score=105.44  Aligned_cols=132  Identities=15%  Similarity=0.059  Sum_probs=84.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      .+||+|||||++|+++|..|++.|.+|+|+|++....|.|........  ........+.     +  ..-+.+.++.++
T Consensus         3 ~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~~~~~~~--~~~~~~~~~~-----d--~~g~~~~~~~~~   73 (232)
T 2cul_A            3 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPF--PPGSLLERAY-----D--PKDERVWAFHAR   73 (232)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCC--CTTCHHHHHC-----C--TTCCCHHHHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccCcccccc--chhhHHhhhc-----c--CCCCCHHHHHHH
Confidence            479999999999999999999999999999998443333321110000  0000000000     0  011256788899


Q ss_pred             HHHHHHHc-CCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccc
Q 020533           87 LDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCS  161 (325)
Q Consensus        87 l~~~a~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~  161 (325)
                      +.+.+++. ++..  + +++|+++..++ ...+.|.+.++       .+ +.+|.||+|+|.++....  .+|...
T Consensus        74 l~~~~~~~~gv~i--~-~~~v~~i~~~~-~~v~~v~~~~g-------~~-i~a~~VV~A~G~~s~~~~--~~G~~~  135 (232)
T 2cul_A           74 AKYLLEGLRPLHL--F-QATATGLLLEG-NRVVGVRTWEG-------PP-ARGEKVVLAVGSFLGARL--FLGGVV  135 (232)
T ss_dssp             HHHHHHTCTTEEE--E-ECCEEEEEEET-TEEEEEEETTS-------CC-EECSEEEECCTTCSSCEE--EETTEE
T ss_pred             HHHHHHcCCCcEE--E-EeEEEEEEEeC-CEEEEEEECCC-------CE-EECCEEEECCCCChhhce--ecCCcc
Confidence            99999887 7543  4 67899998764 22345666543       46 899999999997655442  345443

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=99.28  E-value=4.3e-11  Score=113.97  Aligned_cols=134  Identities=13%  Similarity=0.208  Sum_probs=88.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC----------------------CCC-----c-eEeec
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY----------------------SYD-----R-LRLHL   58 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~----------------------~y~-----~-~~~~~   58 (325)
                      .+||+||||||+||++|..|++.|++|+||||.+..+...+..                      .++     . ..+..
T Consensus        26 ~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~  105 (549)
T 2r0c_A           26 ETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQIRTAGWPGDHPLDAAWVTR  105 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHTTCHHHHHTSSCCTTSBCCEEEESS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCChHHHHhhcCCcccccceEEecc
Confidence            4699999999999999999999999999999988665322211                      000     0 11110


Q ss_pred             --CCCccCCCCCCC--------CCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCC
Q 020533           59 --AKQFCQLPHLPF--------PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSP  128 (325)
Q Consensus        59 --~~~~~~~~~~~~--------~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~  128 (325)
                        ...+..+.....        ........++..+.++|.+.+++.     ++++++|++++.++  +.+++++.+..++
T Consensus       106 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~-----v~~~~~v~~~~~~~--~~v~v~~~~~~~G  178 (549)
T 2r0c_A          106 VGGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER-----LRTRSRLDSFEQRD--DHVRATITDLRTG  178 (549)
T ss_dssp             BTSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG-----EECSEEEEEEEECS--SCEEEEEEETTTC
T ss_pred             CCCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHHh-----cccCcEEEEEEEeC--CEEEEEEEECCCC
Confidence              001111110000        000112357888999999988876     59999999998865  5688888763222


Q ss_pred             CceeEEEEEeCeEEEcccCCCC
Q 020533          129 GREIEEYYSGRFLVVASGETTN  150 (325)
Q Consensus       129 ~~~~~~~~~ad~vIiAtG~~~~  150 (325)
                        +..+ ++||+||.|+|.+|.
T Consensus       179 --~~~~-i~a~~vVgADG~~S~  197 (549)
T 2r0c_A          179 --ATRA-VHARYLVACDGASSP  197 (549)
T ss_dssp             --CEEE-EEEEEEEECCCTTCH
T ss_pred             --CEEE-EEeCEEEECCCCCcH
Confidence              2257 899999999998763

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=99.27  E-value=3.7e-11  Score=115.16  Aligned_cols=140  Identities=14%  Similarity=0.200  Sum_probs=88.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhc------CCCeEEEecCCCCCCccCCCC------------------CC--------ce
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQ------SIPYVILERENCYASIWKKYS------------------YD--------RL   54 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~------g~~v~v~e~~~~~Gg~w~~~~------------------y~--------~~   54 (325)
                      .+||+|||||++||++|..|++.      |++|+|+||.+.+|+......                  .+        ..
T Consensus        35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~ll~~~~~~g~~~~~~~~~~~~  114 (584)
T 2gmh_A           35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRF  114 (584)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHHHHHHHhcCCceeeeechhhe
Confidence            47999999999999999999999      999999999987765321100                  00        00


Q ss_pred             EeecCCCccCCCCCC---CCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEee----cCC
Q 020533           55 RLHLAKQFCQLPHLP---FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASN----LLS  127 (325)
Q Consensus        55 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~----~~~  127 (325)
                      ..........++..+   +........++.++.++|.+.+++.++.  ++++++|+++..+++...+.|.+.+    .++
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~--i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G  192 (584)
T 2gmh_A          115 GILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVE--VYPGYAAAEILFHEDGSVKGIATNDVGIQKDG  192 (584)
T ss_dssp             EEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCE--EETTCCEEEEEECTTSSEEEEEECCEEECTTS
T ss_pred             eeeccCCCccccccCccccccCCCEEEeHHHHHHHHHHHHHHcCCE--EEcCCEEEEEEEcCCCCEEEEEeCCccccCCC
Confidence            000010011111111   0011112357889999999999988855  4999999999876522233366653    111


Q ss_pred             CCc----eeEEEEEeCeEEEcccCCC
Q 020533          128 PGR----EIEEYYSGRFLVVASGETT  149 (325)
Q Consensus       128 ~~~----~~~~~~~ad~vIiAtG~~~  149 (325)
                      ..+    ...+ +++|+||+|+|.++
T Consensus       193 ~~~~~~~~g~~-i~Ad~VV~AdG~~S  217 (584)
T 2gmh_A          193 APKTTFERGLE-LHAKVTIFAEGCHG  217 (584)
T ss_dssp             CEEEEEECCCE-EECSEEEECCCTTC
T ss_pred             CcccccCCceE-EECCEEEEeeCCCc
Confidence            000    0046 89999999999876

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=99.24  E-value=1.6e-11  Score=111.58  Aligned_cols=126  Identities=13%  Similarity=0.117  Sum_probs=83.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC------------------------CCCCceEeecCCCc
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK------------------------YSYDRLRLHLAKQF   62 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~------------------------~~y~~~~~~~~~~~   62 (325)
                      .+||+|||||++|+++|..|++.|++|+|+|+.+.+++.-..                        ..............
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~~   90 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHNKS   90 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEETTEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeCCce
Confidence            579999999999999999999999999999998876531000                        00001111000000


Q ss_pred             cCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEE
Q 020533           63 CQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLV  142 (325)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vI  142 (325)
                        +..++.+........+.++.++|.+.+.+.++.  ++++++|++++. +  +  .|++.++       .+ +.+|.||
T Consensus        91 --~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~--i~~~~~v~~i~~-~--~--~v~~~~g-------~~-~~ad~vV  153 (379)
T 3alj_A           91 --VSKETFNGLPWRIMTRSHLHDALVNRARALGVD--ISVNSEAVAADP-V--G--RLTLQTG-------EV-LEADLIV  153 (379)
T ss_dssp             --EEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCE--EESSCCEEEEET-T--T--EEEETTS-------CE-EECSEEE
T ss_pred             --eeeccCCCCceEEECHHHHHHHHHHHHHhcCCE--EEeCCEEEEEEe-C--C--EEEECCC-------CE-EEcCEEE
Confidence              000000000012356789999999999887754  599999999976 2  3  6777653       46 8999999


Q ss_pred             EcccCCC
Q 020533          143 VASGETT  149 (325)
Q Consensus       143 iAtG~~~  149 (325)
                      .|+|.++
T Consensus       154 ~AdG~~s  160 (379)
T 3alj_A          154 GADGVGS  160 (379)
T ss_dssp             ECCCTTC
T ss_pred             ECCCccH
Confidence            9999765

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.24  E-value=3.1e-11  Score=111.74  Aligned_cols=63  Identities=6%  Similarity=0.090  Sum_probs=49.3

Q ss_pred             CHHHHHHHHHHHHHHcCCCceeeeCe---EEEEEEEcCCCCcEE-EEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533           79 SRAQFIEHLDHYVSHFNIGPSIRYQR---SVESASYDEATNMWN-VKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (325)
Q Consensus        79 ~~~~~~~yl~~~a~~~~l~~~i~~~~---~V~~i~~~~~~~~~~-v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~  153 (325)
                      ....+.+.|.+.+++.|+.  +++++   +|+++..++  +.|. |++.++       .+ +.||.||+|+|.++....
T Consensus       159 ~~~~~~~~L~~~a~~~Gv~--i~~~t~~~~V~~i~~~~--~~v~gV~t~~G-------~~-i~Ad~VV~AtG~~s~~l~  225 (438)
T 3dje_A          159 HARNALVAAAREAQRMGVK--FVTGTPQGRVVTLIFEN--NDVKGAVTADG-------KI-WRAERTFLCAGASAGQFL  225 (438)
T ss_dssp             CHHHHHHHHHHHHHHTTCE--EEESTTTTCEEEEEEET--TEEEEEEETTT-------EE-EECSEEEECCGGGGGGTS
T ss_pred             cHHHHHHHHHHHHHhcCCE--EEeCCcCceEEEEEecC--CeEEEEEECCC-------CE-EECCEEEECCCCChhhhc
Confidence            3568888899999988855  49999   999998764  6676 777653       57 999999999998764433

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.23  E-value=1.2e-11  Score=114.92  Aligned_cols=134  Identities=19%  Similarity=0.260  Sum_probs=86.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC--CCCceEee---------cCC--Cc-----cCCC-
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY--SYDRLRLH---------LAK--QF-----CQLP-   66 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~--~y~~~~~~---------~~~--~~-----~~~~-   66 (325)
                      ..+||+|||||++|+++|..|++.|.+|+|+|+.+.+|+.....  ....+...         .+.  .+     ..+. 
T Consensus        25 ~~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (447)
T 2i0z_A           25 MHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNN  104 (447)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCH
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhcCH
Confidence            35799999999999999999999999999999998776421100  00000000         000  00     0000 


Q ss_pred             ----------CCCC--CCCCCCCC---CHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCc-EEEEEeecCCCCc
Q 020533           67 ----------HLPF--PSSYPMFV---SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNM-WNVKASNLLSPGR  130 (325)
Q Consensus        67 ----------~~~~--~~~~~~~~---~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~-~~v~~~~~~~~~~  130 (325)
                                ..++  ......++   ....+.+.|.+.+++.++.  ++++++|+++..++  +. |.|++.++     
T Consensus       105 ~~~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV~--i~~~~~V~~i~~~~--~~v~~V~~~~G-----  175 (447)
T 2i0z_A          105 EDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVK--IRTNTPVETIEYEN--GQTKAVILQTG-----  175 (447)
T ss_dssp             HHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCE--EECSCCEEEEEEET--TEEEEEEETTC-----
T ss_pred             HHHHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCCE--EEeCcEEEEEEecC--CcEEEEEECCC-----
Confidence                      0000  00000111   4678888999999888755  49999999998754  44 77877653     


Q ss_pred             eeEEEEEeCeEEEcccCCCCC
Q 020533          131 EIEEYYSGRFLVVASGETTNP  151 (325)
Q Consensus       131 ~~~~~~~ad~vIiAtG~~~~p  151 (325)
                        .+ +.||.||+|+|.++.|
T Consensus       176 --~~-i~Ad~VVlAtGg~s~~  193 (447)
T 2i0z_A          176 --EV-LETNHVVIAVGGKSVP  193 (447)
T ss_dssp             --CE-EECSCEEECCCCSSSG
T ss_pred             --CE-EECCEEEECCCCCcCC
Confidence              46 8999999999987743

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=99.23  E-value=2.6e-11  Score=115.39  Aligned_cols=176  Identities=13%  Similarity=0.108  Sum_probs=108.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC-CCCCccCCCCCCceEee-----------cCCCc--------cCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN-CYASIWKKYSYDRLRLH-----------LAKQF--------CQL   65 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~-~~Gg~w~~~~y~~~~~~-----------~~~~~--------~~~   65 (325)
                      ..+||+|||||++|++||..|++.|.+|+|+|++. .+|+. .  +.+.....           ....+        ..+
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~-~--Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f  102 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQM-S--CNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQF  102 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCC-C--SCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEE
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCc-C--ccccccccchHHHHHHHHHhhhHHHHHhhhcccce
Confidence            35899999999999999999999999999999984 44431 1  11110000           00000        000


Q ss_pred             CCCC---CCCC--CCCCCCHHHHHHHHHHHHHHc-CCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeC
Q 020533           66 PHLP---FPSS--YPMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGR  139 (325)
Q Consensus        66 ~~~~---~~~~--~~~~~~~~~~~~yl~~~a~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad  139 (325)
                      ....   -+..  ......+..+.+++.+.++++ ++.  + ++++|+++..++ +..+.|.+.++       .. +.|+
T Consensus       103 ~~l~~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVe--I-~~~~Vt~L~~e~-g~V~GV~t~dG-------~~-i~Ad  170 (637)
T 2zxi_A          103 KMLNTRKGKAVQSPRAQADKKRYREYMKKVCENQENLY--I-KQEEVVDIIVKN-NQVVGVRTNLG-------VE-YKTK  170 (637)
T ss_dssp             EEESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEE--E-EESCEEEEEESS-SBEEEEEETTS-------CE-EECS
T ss_pred             eecccccCccccchhhhCCHHHHHHHHHHHHHhCCCCE--E-EEeEEEEEEecC-CEEEEEEECCC-------cE-EEeC
Confidence            0000   0000  001235567888888888874 644  3 577899887654 22344666543       56 8999


Q ss_pred             eEEEcccCCCCCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEe-c
Q 020533          140 FLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVR-S  218 (325)
Q Consensus       140 ~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r-~  218 (325)
                      .||+|||.+  +..+.++|.+.+      .                +.+   +| +.++.+++..|.+.|.+++.+.+ .
T Consensus       171 aVVLATG~~--s~~~~~~G~~~~------~----------------~Gr---~G-~~~A~~la~~L~~lG~~v~~l~tgt  222 (637)
T 2zxi_A          171 AVVVTTGTF--LNGVIYIGDKMI------P----------------GGR---LG-EPRSEGLSDFYRRFDFPLIRFKTGT  222 (637)
T ss_dssp             EEEECCTTC--BTCEEEETTEEE------E----------------CSB---TT-BCCBCTHHHHHHHTTCCCEEEEEEE
T ss_pred             EEEEccCCC--ccCceeccceec------C----------------CCC---CC-chhHHHHHHHHHhcCCceEEecCCc
Confidence            999999954  444556666554      1                111   23 56789999999999988877654 3


Q ss_pred             CCeeec
Q 020533          219 PVHVLS  224 (325)
Q Consensus       219 ~~~~~p  224 (325)
                      +..+..
T Consensus       223 ppRi~~  228 (637)
T 2zxi_A          223 PARLDK  228 (637)
T ss_dssp             CCEEEG
T ss_pred             Cceecc
Confidence            444433

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.21  E-value=2.3e-10  Score=109.49  Aligned_cols=137  Identities=14%  Similarity=0.133  Sum_probs=87.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeec------------CCC-------------
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHL------------AKQ-------------   61 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~------------~~~-------------   61 (325)
                      .+||+|||||++||++|..|++.|.+|+|+|+.+.+||...... .++....            +..             
T Consensus       126 ~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~-gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~  204 (571)
T 1y0p_A          126 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAA-GGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNIN  204 (571)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCC-SCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcC-ceEEeCCCHHHHHhCCCCCHHHHHHHHHHhcCCCC
Confidence            57999999999999999999999999999999998887533210 0000000            000             


Q ss_pred             ----------------------ccCCC------CCCCCCCC---CCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEE
Q 020533           62 ----------------------FCQLP------HLPFPSSY---PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESAS  110 (325)
Q Consensus        62 ----------------------~~~~~------~~~~~~~~---~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~  110 (325)
                                            -..+.      ...++...   ........+.+.|.+.+++.++.  ++++++|+++.
T Consensus       205 ~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~~~gv~--i~~~~~v~~l~  282 (571)
T 1y0p_A          205 DPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNID--LRMNTRGIEVL  282 (571)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCE--EESSEEEEEEE
T ss_pred             CHHHHHHHHHccHHHHHHHHhcCCCCccCcccCCcCCCeeEecCCCCCCHHHHHHHHHHHHHhcCCE--EEeCCEeeEeE
Confidence                                  00000      00000000   01133578889999999988865  49999999998


Q ss_pred             EcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533          111 YDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (325)
Q Consensus       111 ~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~  150 (325)
                      .+++...+.|.+.+.++   +..+ +.+|.||+|||.++.
T Consensus       283 ~~~~g~v~Gv~~~~~~g---~~~~-i~a~~VVlAtGg~~~  318 (571)
T 1y0p_A          283 KDDKGTVKGILVKGMYK---GYYW-VKADAVILATGGFAK  318 (571)
T ss_dssp             ECTTSCEEEEEEEETTT---EEEE-EECSEEEECCCCCTT
T ss_pred             EcCCCeEEEEEEEeCCC---cEEE-EECCeEEEeCCCccc
Confidence            75422334455554221   3357 899999999998653

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.19  E-value=1.7e-10  Score=109.19  Aligned_cols=132  Identities=21%  Similarity=0.332  Sum_probs=83.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC-------CccCCCCCCc-eEee----------cCCCccCCCC-
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA-------SIWKKYSYDR-LRLH----------LAKQFCQLPH-   67 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~G-------g~w~~~~y~~-~~~~----------~~~~~~~~~~-   67 (325)
                      .+||+|||||++|+++|..|++.|++|+|+|+.+.++       +.|....... ....          ..+....+.. 
T Consensus       107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i~~~  186 (549)
T 3nlc_A          107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDP  186 (549)
T ss_dssp             CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCSCCT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEeccc
Confidence            4799999999999999999999999999999997652       2232211000 0000          0000000000 


Q ss_pred             -------------CCCCCC--C--CCC---CCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCC
Q 020533           68 -------------LPFPSS--Y--PMF---VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLS  127 (325)
Q Consensus        68 -------------~~~~~~--~--~~~---~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~  127 (325)
                                   +..+..  +  ..+   ....++.+.+.+.+++.++..  +++++|+++..++ ...+.|++.++  
T Consensus       187 ~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~I--~~~t~V~~I~~~~-~~v~gV~l~~G--  261 (549)
T 3nlc_A          187 NFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEI--RFSTRVDDLHMED-GQITGVTLSNG--  261 (549)
T ss_dssp             TCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCEE--ESSCCEEEEEESS-SBEEEEEETTS--
T ss_pred             cccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCEE--EeCCEEEEEEEeC-CEEEEEEECCC--
Confidence                         000000  0  001   123677888888888888654  9999999998764 23455777654  


Q ss_pred             CCceeEEEEEeCeEEEcccCCC
Q 020533          128 PGREIEEYYSGRFLVVASGETT  149 (325)
Q Consensus       128 ~~~~~~~~~~ad~vIiAtG~~~  149 (325)
                           .+ +.||.||+|+|.++
T Consensus       262 -----~~-i~Ad~VVlA~G~~s  277 (549)
T 3nlc_A          262 -----EE-IKSRHVVLAVGHSA  277 (549)
T ss_dssp             -----CE-EECSCEEECCCTTC
T ss_pred             -----CE-EECCEEEECCCCCh
Confidence                 56 89999999999765

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=99.19  E-value=1.1e-10  Score=106.80  Aligned_cols=125  Identities=16%  Similarity=0.101  Sum_probs=81.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC----CC-ccCC----------CCC--------CceEeecC--CC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY----AS-IWKK----------YSY--------DRLRLHLA--KQ   61 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~----Gg-~w~~----------~~y--------~~~~~~~~--~~   61 (325)
                      .+||+|||||++||++|..|++.|++|+|||+.+..    |+ .+..          ...        ........  ..
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~   84 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTGE   84 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEEEecCCCC
Confidence            579999999999999999999999999999998753    11 1100          000        00000000  00


Q ss_pred             ccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeE
Q 020533           62 FCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFL  141 (325)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~v  141 (325)
                      ..  ...+.+   .....+..+.++|.+.+  .++  .++++++|++++.++  +.|+|++.++       .+ +.+|.|
T Consensus        85 ~~--~~~~~~---~~~~~~~~l~~~L~~~~--~~~--~i~~~~~v~~i~~~~--~~v~v~~~~g-------~~-~~ad~v  145 (397)
T 2vou_A           85 RV--GSVPAD---WRFTSYDSIYGGLYELF--GPE--RYHTSKCLVGLSQDS--ETVQMRFSDG-------TK-AEANWV  145 (397)
T ss_dssp             EE--EEEECC---CCEEEHHHHHHHHHHHH--CST--TEETTCCEEEEEECS--SCEEEEETTS-------CE-EEESEE
T ss_pred             cc--ccccCc---ccccCHHHHHHHHHHhC--CCc--EEEcCCEEEEEEecC--CEEEEEECCC-------CE-EECCEE
Confidence            00  000000   11244567777777665  243  459999999998765  5688888664       46 899999


Q ss_pred             EEcccCCCC
Q 020533          142 VVASGETTN  150 (325)
Q Consensus       142 IiAtG~~~~  150 (325)
                      |.|+|.+|.
T Consensus       146 V~AdG~~S~  154 (397)
T 2vou_A          146 IGADGGASV  154 (397)
T ss_dssp             EECCCTTCH
T ss_pred             EECCCcchh
Confidence            999998764

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=99.19  E-value=2e-11  Score=111.44  Aligned_cols=136  Identities=16%  Similarity=0.092  Sum_probs=85.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC------C-C-ccCC--------CC----------CCceEeecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY------A-S-IWKK--------YS----------YDRLRLHLAK   60 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~------G-g-~w~~--------~~----------y~~~~~~~~~   60 (325)
                      ++||+|||||++|+++|..|++.|++|+|+|+.+..      + | .|..        ..          +..+......
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~   81 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAG   81 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETT
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEEECC
Confidence            379999999999999999999999999999998641      1 1 1110        00          0111111111


Q ss_pred             CccCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEE-eecCCCCceeEEEEEe
Q 020533           61 QFCQLPHLPFP-SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKA-SNLLSPGREIEEYYSG  138 (325)
Q Consensus        61 ~~~~~~~~~~~-~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~-~~~~~~~~~~~~~~~a  138 (325)
                      ....+...... ........+.++.+.|.+.+.+.++.  ++++++|++++.++ .+.+.|++ .++     +..+ +++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~--i~~~~~v~~i~~~~-~~~~~v~~~~~g-----~~~~-~~a  152 (394)
T 1k0i_A           82 QRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGAT--TVYQAAEVRLHDLQ-GERPYVTFERDG-----ERLR-LDC  152 (394)
T ss_dssp             EEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCE--EESSCEEEEEECTT-SSSCEEEEEETT-----EEEE-EEC
T ss_pred             ceEEeccccccCCCceEEechHHHHHHHHHHHHhcCCe--EEeceeEEEEEEec-CCceEEEEecCC-----cEEE-EEe
Confidence            00000000000 00112246678888888888877754  59999999998653 24577877 432     2247 899


Q ss_pred             CeEEEcccCCCCC
Q 020533          139 RFLVVASGETTNP  151 (325)
Q Consensus       139 d~vIiAtG~~~~p  151 (325)
                      |.||.|+|.+|..
T Consensus       153 ~~vV~AdG~~S~v  165 (394)
T 1k0i_A          153 DYIAGCDGFHGIS  165 (394)
T ss_dssp             SEEEECCCTTCST
T ss_pred             CEEEECCCCCcHH
Confidence            9999999987653

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.19  E-value=1.1e-10  Score=101.79  Aligned_cols=135  Identities=16%  Similarity=0.196  Sum_probs=81.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhc-CCCeEEEecCCCCCC-ccCCC-CCCceEeecCCC-ccCCCCCCCCCCCCC--CCCH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQ-SIPYVILERENCYAS-IWKKY-SYDRLRLHLAKQ-FCQLPHLPFPSSYPM--FVSR   80 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~-g~~v~v~e~~~~~Gg-~w~~~-~y~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~   80 (325)
                      .+||+|||||++|+++|..|++. |.+|+|+|+++.+|| .|... .+..+....+.. ++.-...++......  ....
T Consensus        39 ~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  118 (284)
T 1rp0_A           39 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHA  118 (284)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCH
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEEecCH
Confidence            47999999999999999999997 999999999988875 45332 122222111100 000000111100000  1145


Q ss_pred             HHHHHHHHHHHHH-cCCCceeeeCeEEEEEEEcCCCCc-EEEEEee---------cCCCCceeEEEEEeCeEEEcccCC
Q 020533           81 AQFIEHLDHYVSH-FNIGPSIRYQRSVESASYDEATNM-WNVKASN---------LLSPGREIEEYYSGRFLVVASGET  148 (325)
Q Consensus        81 ~~~~~yl~~~a~~-~~l~~~i~~~~~V~~i~~~~~~~~-~~v~~~~---------~~~~~~~~~~~~~ad~vIiAtG~~  148 (325)
                      .++...+.+.+.+ .++  .++++++|+++..++  +. ..|.+..         +..+  +... +.+|.||+|+|..
T Consensus       119 ~~~~~~l~~~~~~~~gv--~i~~~~~V~~i~~~~--~~v~gv~~~~~~~~~~~~~g~~g--~~~~-i~ad~VV~AtG~~  190 (284)
T 1rp0_A          119 ALFTSTIMSKLLARPNV--KLFNAVAAEDLIVKG--NRVGGVVTNWALVAQNHHTQSCM--DPNV-MEAKIVVSSCGHD  190 (284)
T ss_dssp             HHHHHHHHHHHHTSTTE--EEEETEEEEEEEEET--TEEEEEEEEEHHHHTCTTTSSCC--CCEE-EEEEEEEECCCSS
T ss_pred             HHHHHHHHHHHHhcCCC--EEEcCcEEEEEEecC--CeEEEEEEeccccccccCccccC--ceEE-EECCEEEECCCCc
Confidence            6777777776654 464  459999999998764  32 2344431         0111  2267 8999999999954

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=99.19  E-value=3.5e-11  Score=110.00  Aligned_cols=132  Identities=14%  Similarity=0.134  Sum_probs=86.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC-------------------ccCC-----CCCCceEeecC-C-
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS-------------------IWKK-----YSYDRLRLHLA-K-   60 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg-------------------~w~~-----~~y~~~~~~~~-~-   60 (325)
                      ++||+|||||++|+++|..|++.|++|+|+|+.+....                   .|..     ..+..+..... . 
T Consensus         6 ~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~g~   85 (399)
T 2x3n_A            6 HIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHDGE   85 (399)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEETTE
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCCCC
Confidence            47999999999999999999999999999999875411                   0000     00000111000 0 


Q ss_pred             CccCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHc-CCCceeeeCeEEEEEEEcCCCCcE--EEEEeecCCCCceeEEEE
Q 020533           61 QFCQLPHLPFP-SSYPMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMW--NVKASNLLSPGREIEEYY  136 (325)
Q Consensus        61 ~~~~~~~~~~~-~~~~~~~~~~~~~~yl~~~a~~~-~l~~~i~~~~~V~~i~~~~~~~~~--~v~~~~~~~~~~~~~~~~  136 (325)
                      ....++..... ........+.++.+.|.+.+++. ++.  ++++++|++++.++  +.|  .|++.++       .+ +
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~--i~~~~~v~~i~~~~--~~v~g~v~~~~g-------~~-~  153 (399)
T 2x3n_A           86 LLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVE--MLFETRIEAVQRDE--RHAIDQVRLNDG-------RV-L  153 (399)
T ss_dssp             EEEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEE--EECSCCEEEEEECT--TSCEEEEEETTS-------CE-E
T ss_pred             EEEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcE--EEcCCEEEEEEEcC--CceEEEEEECCC-------CE-E
Confidence            00011100000 01112367889999999998876 644  59999999998865  567  7877653       46 8


Q ss_pred             EeCeEEEcccCCCC
Q 020533          137 SGRFLVVASGETTN  150 (325)
Q Consensus       137 ~ad~vIiAtG~~~~  150 (325)
                      .+|.||.|+|.++.
T Consensus       154 ~ad~vV~AdG~~s~  167 (399)
T 2x3n_A          154 RPRVVVGADGIASY  167 (399)
T ss_dssp             EEEEEEECCCTTCH
T ss_pred             ECCEEEECCCCChH
Confidence            99999999997663

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=99.19  E-value=1.1e-10  Score=111.70  Aligned_cols=135  Identities=15%  Similarity=0.132  Sum_probs=88.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC------------------ccCC---CCC---CceEeecCCC-
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS------------------IWKK---YSY---DRLRLHLAKQ-   61 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg------------------~w~~---~~y---~~~~~~~~~~-   61 (325)
                      .+||+|||||++|+++|..|++.|++|+|+|+.+..+.                  .|..   ..+   .......... 
T Consensus        23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~  102 (591)
T 3i3l_A           23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFLWGQDQ  102 (591)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEECSSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEEecCCC
Confidence            47999999999999999999999999999999864321                  1100   000   0011110000 


Q ss_pred             ---ccCCCCCC---CCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEE
Q 020533           62 ---FCQLPHLP---FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY  135 (325)
Q Consensus        62 ---~~~~~~~~---~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~  135 (325)
                         .+.+....   +.........+..+.++|.+.+++.|+..  +++++|+++..++ ...+.|++.+..    +..+ 
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i--~~g~~V~~v~~~~-g~~~~V~~~~~G----~~~~-  174 (591)
T 3i3l_A          103 APWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITV--HEETPVTDVDLSD-PDRVVLTVRRGG----ESVT-  174 (591)
T ss_dssp             CCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEE--ETTCCEEEEECCS-TTCEEEEEEETT----EEEE-
T ss_pred             ccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEE--EeCCEEEEEEEcC-CCEEEEEEecCC----ceEE-
Confidence               00111100   01111124578899999999999888554  9999999998752 466888887421    2357 


Q ss_pred             EEeCeEEEcccCCC
Q 020533          136 YSGRFLVVASGETT  149 (325)
Q Consensus       136 ~~ad~vIiAtG~~~  149 (325)
                      +.||.||.|+|.++
T Consensus       175 i~AdlVV~AdG~~S  188 (591)
T 3i3l_A          175 VESDFVIDAGGSGG  188 (591)
T ss_dssp             EEESEEEECCGGGC
T ss_pred             EEcCEEEECCCCcc
Confidence            99999999999765

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.18  E-value=2.8e-10  Score=108.83  Aligned_cols=138  Identities=12%  Similarity=0.074  Sum_probs=87.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeec-----------------------C---
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHL-----------------------A---   59 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~-----------------------~---   59 (325)
                      ..+||+|||||++||++|..|++.|.+|+|||+.+.+||......- ++....                       .   
T Consensus       120 ~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~s~g-g~~~~~~~~~~~~g~~ds~~~~~~~~~~~~~~~  198 (566)
T 1qo8_A          120 ETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAG-GMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQ  198 (566)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCS-CEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCc-eeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCC
Confidence            3579999999999999999999999999999999988764221100 000000                       0   


Q ss_pred             --C-------------------CccCC------CCCCCCCCC---CCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEE
Q 020533           60 --K-------------------QFCQL------PHLPFPSSY---PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESA  109 (325)
Q Consensus        60 --~-------------------~~~~~------~~~~~~~~~---~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i  109 (325)
                        .                   .-..+      ....++...   ........+.+.|.+.+++.++..  +++++|+++
T Consensus       199 ~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~~~~~~~~l~~~L~~~~~~~gv~i--~~~~~v~~l  276 (566)
T 1qo8_A          199 NDIKLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDT--RLNSRVVKL  276 (566)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCE--ECSEEEEEE
T ss_pred             CCHHHHHHHHhccHHHHHHHHhcCCccccccccCCCCCCceeecCCCCCCHHHHHHHHHHHHHhcCCEE--EeCCEEEEE
Confidence              0                   00000      000011000   011346788899999999988665  999999999


Q ss_pred             EEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533          110 SYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (325)
Q Consensus       110 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~  150 (325)
                      ..+++...+.|.+.+.++   +... +.+|.||+|||.++.
T Consensus       277 ~~~~~g~v~Gv~~~~~~g---~~~~-i~A~~VVlAtGg~s~  313 (566)
T 1qo8_A          277 VVNDDHSVVGAVVHGKHT---GYYM-IGAKSVVLATGGYGM  313 (566)
T ss_dssp             EECTTSBEEEEEEEETTT---EEEE-EEEEEEEECCCCCTT
T ss_pred             EECCCCcEEEEEEEeCCC---cEEE-EEcCEEEEecCCccc
Confidence            875322223455553221   3347 899999999998764

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=99.18  E-value=3.5e-10  Score=103.76  Aligned_cols=137  Identities=18%  Similarity=0.174  Sum_probs=86.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCC-eEEEecCCCCCCccCCC--------------C----------CCceEeecCC-
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIP-YVILERENCYASIWKKY--------------S----------YDRLRLHLAK-   60 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~-v~v~e~~~~~Gg~w~~~--------------~----------y~~~~~~~~~-   60 (325)
                      .+||+|||||++||++|..|++.|++ |+|||+.+.++......              .          ...+...... 
T Consensus         4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~g   83 (410)
T 3c96_A            4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSG   83 (410)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHHHHhhCCCcceEEEEcCCC
Confidence            47999999999999999999999999 99999988654321110              0          0001111000 


Q ss_pred             -CccCCCCC-CCCCCCC-CCCCHHHHHHHHHHHHHH-cCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEE
Q 020533           61 -QFCQLPHL-PFPSSYP-MFVSRAQFIEHLDHYVSH-FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYY  136 (325)
Q Consensus        61 -~~~~~~~~-~~~~~~~-~~~~~~~~~~yl~~~a~~-~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~  136 (325)
                       .....+.. ......+ ....+.++.++|.+.+.+ .+. ..++++++|++++. +  +.++|++.+..++  +..+ +
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~-~~v~~~~~v~~i~~-~--~~v~v~~~~~~~g--~~~~-~  156 (410)
T 3c96_A           84 ATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQ-QAVRTGLGVERIEE-R--DGRVLIGARDGHG--KPQA-L  156 (410)
T ss_dssp             CEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCT-TSEEESEEEEEEEE-E--TTEEEEEEEETTS--CEEE-E
T ss_pred             CEEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCC-cEEEECCEEEEEec-C--CccEEEEecCCCC--CceE-E
Confidence             00000000 0000011 234678899999988876 352 23599999999987 4  4688887762111  2257 8


Q ss_pred             EeCeEEEcccCCCC
Q 020533          137 SGRFLVVASGETTN  150 (325)
Q Consensus       137 ~ad~vIiAtG~~~~  150 (325)
                      .+|.||.|+|.+|.
T Consensus       157 ~ad~vV~AdG~~S~  170 (410)
T 3c96_A          157 GADVLVGADGIHSA  170 (410)
T ss_dssp             EESEEEECCCTTCH
T ss_pred             ecCEEEECCCccch
Confidence            99999999998764

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=99.18  E-value=8e-11  Score=109.53  Aligned_cols=133  Identities=11%  Similarity=0.088  Sum_probs=85.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC--CCccCCCC-----------C-----------CceEeecCCCc
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY--ASIWKKYS-----------Y-----------DRLRLHLAKQF   62 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~--Gg~w~~~~-----------y-----------~~~~~~~~~~~   62 (325)
                      .+||+|||||++|+++|..|++.|++|+|+|+.+..  |..+....           .           .+.....+...
T Consensus         6 ~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~   85 (453)
T 3atr_A            6 KYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYSPDMQ   85 (453)
T ss_dssp             ECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEECTTSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEECCCCc
Confidence            479999999999999999999999999999998753  22222100           0           00001000000


Q ss_pred             cCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEE-EEEeecCCCCceeEEEEEeCeE
Q 020533           63 CQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWN-VKASNLLSPGREIEEYYSGRFL  141 (325)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~-v~~~~~~~~~~~~~~~~~ad~v  141 (325)
                      ..   .+++. ......+.++.+.|.+.+.+.++.  ++++++|+++..++  +.+. |++.+...+  +..+ +.||.|
T Consensus        86 ~~---~~~~~-~~~~i~r~~l~~~L~~~a~~~gv~--i~~~~~v~~i~~~~--~~v~gv~~~~~~~G--~~~~-~~ad~V  154 (453)
T 3atr_A           86 TV---WTVNG-EGFELNAPLYNQRVLKEAQDRGVE--IWDLTTAMKPIFED--GYVKGAVLFNRRTN--EELT-VYSKVV  154 (453)
T ss_dssp             CE---EEEEE-EEEEECHHHHHHHHHHHHHHTTCE--EESSEEEEEEEEET--TEEEEEEEEETTTT--EEEE-EECSEE
T ss_pred             eE---EeECC-CcEEEcHHHHHHHHHHHHHHcCCE--EEeCcEEEEEEEEC--CEEEEEEEEEcCCC--ceEE-EEcCEE
Confidence            00   00000 012356788999999999887754  49999999998764  4443 555532111  2247 899999


Q ss_pred             EEcccCCCC
Q 020533          142 VVASGETTN  150 (325)
Q Consensus       142 IiAtG~~~~  150 (325)
                      |.|+|.++.
T Consensus       155 V~AdG~~s~  163 (453)
T 3atr_A          155 VEATGYSRS  163 (453)
T ss_dssp             EECCGGGCT
T ss_pred             EECcCCchh
Confidence            999997664

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.17  E-value=1.7e-10  Score=112.56  Aligned_cols=132  Identities=14%  Similarity=0.223  Sum_probs=86.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC--CccCCCC--CC------------------------------
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA--SIWKKYS--YD------------------------------   52 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~G--g~w~~~~--y~------------------------------   52 (325)
                      .+||+|||||++|+++|..|+++|.+|+|+|+++.+|  .+++...  ++                              
T Consensus       272 ~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~~g~gaS~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  351 (676)
T 3ps9_A          272 KREAAIIGGGIASALLSLALLRRGWQVTLYCADEAPALGASGNRQGALYPLLSKHDEALNRFFSNAFTFARRFYDQLPVK  351 (676)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSCSTTCCSCEEECCCCCSSCHHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCcccccCccCCCceecCcCCCCccHHHHHHHHHHHHHHHHHHHCCCC
Confidence            4799999999999999999999999999999986665  2332210  00                              


Q ss_pred             ------ceE-eecCCC-------cc--CCCCC--------------CCCCC-------CCCCCCHHHHHHHHHHHHHHcC
Q 020533           53 ------RLR-LHLAKQ-------FC--QLPHL--------------PFPSS-------YPMFVSRAQFIEHLDHYVSHFN   95 (325)
Q Consensus        53 ------~~~-~~~~~~-------~~--~~~~~--------------~~~~~-------~~~~~~~~~~~~yl~~~a~~~~   95 (325)
                            +.. +.....       +.  .++..              +.+..       .........+...+.+.+++.|
T Consensus       352 ~~~~~~g~l~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~l~~~~gg~~~p~~g~v~p~~l~~aL~~~a~~~G  431 (676)
T 3ps9_A          352 FDHDWCGVTQLGWDEKSQHKIAQMLSMDLPAELAVAVEANAVEQITGVATNCSGITYPQGGWLCPAELTRNVLELAQQQG  431 (676)
T ss_dssp             CCEECCCEEEECCSHHHHHHHHHHHTSCCCTTTCEEECHHHHHHHHSSCCSSCEEEETTCEEECHHHHHHHHHHHHHHTT
T ss_pred             cCcCcCCeeeecCCHHHHHHHHHHHhcCCcHHHhhhCCHHHHHHhhCCCccCCcEEecCCeeeCHHHHHHHHHHHHHhCC
Confidence                  000 000000       00  00000              00000       0112345778888888888888


Q ss_pred             CCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533           96 IGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (325)
Q Consensus        96 l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~  150 (325)
                      +.  ++++++|+++..++  +.|.|++.++       .+ +.||.||+|+|.++.
T Consensus       432 v~--i~~~t~V~~l~~~~--~~v~V~t~~G-------~~-i~Ad~VVlAtG~~s~  474 (676)
T 3ps9_A          432 LQ--IYYQYQLQNFSRKD--DCWLLNFAGD-------QQ-ATHSVVVLANGHQIS  474 (676)
T ss_dssp             CE--EEESCCEEEEEEET--TEEEEEETTS-------CE-EEESEEEECCGGGGG
T ss_pred             CE--EEeCCeeeEEEEeC--CeEEEEECCC-------CE-EECCEEEECCCcchh
Confidence            65  49999999998876  5688877653       46 899999999998654

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=99.17  E-value=3.5e-10  Score=109.91  Aligned_cols=145  Identities=14%  Similarity=0.207  Sum_probs=90.6

Q ss_pred             CCCCC-CCCeEEEECCChHHHHHHHHHHh-----cCCCeEEEecCCCCCCccCC------------------------CC
Q 020533            1 MKEQA-AGVEVIMVGAGTSGLATAACLSL-----QSIPYVILERENCYASIWKK------------------------YS   50 (325)
Q Consensus         1 M~~~~-~~~~v~IIGaG~~Gl~~a~~L~~-----~g~~v~v~e~~~~~Gg~w~~------------------------~~   50 (325)
                      |...+ ..+||+||||||+||++|..|++     .|++|+|||+.+......+.                        ..
T Consensus         1 m~~~~~~~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~~~~gra~~l~~~tle~l~~lGl~~~l~~~~~~   80 (665)
T 1pn0_A            1 MTKYSESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNLGLADKILSEAND   80 (665)
T ss_dssp             -CCEEEEEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECHHHHHHHHTTTCHHHHHTTCBC
T ss_pred             CCCCCCCCCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCCCCCCceeEEChHHHHHHHHCCCHHHHHHhccc
Confidence            44333 35799999999999999999999     99999999997643211110                        01


Q ss_pred             CCceEeecCC---Ccc---CCCCCC--CCCCCCCCCCHHHHHHHHHHHHHHcC---CCceeeeCeEEEEEEEcC------
Q 020533           51 YDRLRLHLAK---QFC---QLPHLP--FPSSYPMFVSRAQFIEHLDHYVSHFN---IGPSIRYQRSVESASYDE------  113 (325)
Q Consensus        51 y~~~~~~~~~---~~~---~~~~~~--~~~~~~~~~~~~~~~~yl~~~a~~~~---l~~~i~~~~~V~~i~~~~------  113 (325)
                      +..+....+.   ...   .++...  .........++..+.++|.+.+.+.+   +.  +++++++++++.++      
T Consensus        81 ~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~l~q~~le~~L~~~~~~~g~~~v~--v~~g~~v~~~~~d~~~~~~~  158 (665)
T 1pn0_A           81 MSTIALYNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDSIAEISDTRIK--VERPLIPEKMEIDSSKAEDP  158 (665)
T ss_dssp             CCEEEEEEECTTSCEEEEEEEESSCTTSCSSCCEECCHHHHHHHHHHHHHHHHTTSSC--EECSEEEEEEEECGGGTTCT
T ss_pred             cceEEEEeCCCCcceEeecccCcccCCCCCCeeEEeeHHHHHHHHHHHHHhcCCCceE--EEeCCEEEEEEecCcccccC
Confidence            1122221111   000   010000  00011123678899999999998876   44  49999999998764      


Q ss_pred             CCCcEEEEEeec---------------------------------------CCCCceeEEEEEeCeEEEcccCCCC
Q 020533          114 ATNMWNVKASNL---------------------------------------LSPGREIEEYYSGRFLVVASGETTN  150 (325)
Q Consensus       114 ~~~~~~v~~~~~---------------------------------------~~~~~~~~~~~~ad~vIiAtG~~~~  150 (325)
                      +...+++++.+.                                       ..+  +..+ ++||+||.|+|.+|.
T Consensus       159 ~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~G--~~~~-i~A~~VVGADG~~S~  231 (665)
T 1pn0_A          159 EAYPVTMTLRYMSEDESTPLQFGHKTENGLFRSNLQTQEEEDANYRLPEGKEAG--EIET-VHCKYVIGCDGGHSW  231 (665)
T ss_dssp             TCCCEEEEEEECCGGGSCCCTTCCCCCSSSCCCHHHHHHHHHTSCCCSTTCCTT--CEEE-EEEEEEEECCCTTCH
T ss_pred             CCCCEEEEEEecccccccccccccccccccccccccccccccccccccccCCCC--ceEE-EEeCEEEeccCCCCH
Confidence            123577766542                                       111  2257 899999999998764

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=99.17  E-value=1.2e-10  Score=106.38  Aligned_cols=129  Identities=19%  Similarity=0.266  Sum_probs=76.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccC-------CC---------C---C-----------CceEee
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK-------KY---------S---Y-----------DRLRLH   57 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~-------~~---------~---y-----------~~~~~~   57 (325)
                      .+|+||||||+||++|..|+++|++|+||||.+.+...-.       .+         .   +           ......
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~   81 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAASSILPGYGIHINSFGKQALQECLPAENWLAFEEASRYIGGQSRFY   81 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHHSCHHHHHHHHHHCEEECCCCEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHcCChHHHHHhhhhhcccCcceeEe
Confidence            4899999999999999999999999999999875421100       00         0   0           000000


Q ss_pred             cC-CCccCCCC--CCCCCCCC----CCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCc
Q 020533           58 LA-KQFCQLPH--LPFPSSYP----MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR  130 (325)
Q Consensus        58 ~~-~~~~~~~~--~~~~~~~~----~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~  130 (325)
                      .. ........  .+......    ....+.++.+.|.+     .+...|++++++++++..+ ++.++|++.++     
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~-----~~~~~v~~~~~v~~~~~~~-~~~v~v~~~dG-----  150 (412)
T 4hb9_A           82 NERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNK-----GLANTIQWNKTFVRYEHIE-NGGIKIFFADG-----  150 (412)
T ss_dssp             CTTSCEEEC--------------CEEEEEHHHHHHHHHT-----TCTTTEECSCCEEEEEECT-TSCEEEEETTS-----
T ss_pred             cCCcceecccCCccccccccccccceEeeHHHHHHHHHh-----hccceEEEEEEEEeeeEcC-CCeEEEEECCC-----
Confidence            00 00000000  00000000    01234555554433     2344579999999998764 45678888775     


Q ss_pred             eeEEEEEeCeEEEcccCCCC
Q 020533          131 EIEEYYSGRFLVVASGETTN  150 (325)
Q Consensus       131 ~~~~~~~ad~vIiAtG~~~~  150 (325)
                        .+ +++|.||.|.|.+|.
T Consensus       151 --~~-~~adlvVgADG~~S~  167 (412)
T 4hb9_A          151 --SH-ENVDVLVGADGSNSK  167 (412)
T ss_dssp             --CE-EEESEEEECCCTTCH
T ss_pred             --CE-EEeeEEEECCCCCcc
Confidence              56 899999999998763

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.16  E-value=1.3e-10  Score=104.50  Aligned_cols=62  Identities=8%  Similarity=0.018  Sum_probs=48.6

Q ss_pred             CHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533           79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (325)
Q Consensus        79 ~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~  149 (325)
                      ....+.+.+.+.+++.|...  +++++|++++.++ ++.|.|.+.++.     ..+ +.||.||+|+|.++
T Consensus       148 ~~~~~~~~l~~~~~~~Gv~i--~~~~~v~~i~~~~-~~~~~v~~~~g~-----~~~-~~a~~VV~A~G~~s  209 (369)
T 3dme_A          148 DSHALMLAYQGDAESDGAQL--VFHTPLIAGRVRP-EGGFELDFGGAE-----PMT-LSCRVLINAAGLHA  209 (369)
T ss_dssp             CHHHHHHHHHHHHHHTTCEE--ECSCCEEEEEECT-TSSEEEEECTTS-----CEE-EEEEEEEECCGGGH
T ss_pred             CHHHHHHHHHHHHHHCCCEE--ECCCEEEEEEEcC-CceEEEEECCCc-----eeE-EEeCEEEECCCcch
Confidence            45688888888898888654  8999999998864 344888776542     257 89999999999765

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=99.16  E-value=1.6e-10  Score=104.45  Aligned_cols=64  Identities=13%  Similarity=0.228  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCC
Q 020533           80 RAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDI  156 (325)
Q Consensus        80 ~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~  156 (325)
                      ...+.+.+.+.+++.++.  ++++++|++++.++  +.|.|++.+        .+ +.||.||+|+|.++....+.+
T Consensus       148 ~~~l~~~l~~~~~~~G~~--i~~~~~V~~i~~~~--~~~~v~~~~--------g~-~~a~~vV~a~G~~s~~l~~~l  211 (372)
T 2uzz_A          148 SELAIKTWIQLAKEAGCA--QLFNCPVTAIRHDD--DGVTIETAD--------GE-YQAKKAIVCAGTWVKDLLPEL  211 (372)
T ss_dssp             HHHHHHHHHHHHHHTTCE--EECSCCEEEEEECS--SSEEEEESS--------CE-EEEEEEEECCGGGGGGTSTTC
T ss_pred             HHHHHHHHHHHHHHCCCE--EEcCCEEEEEEEcC--CEEEEEECC--------Ce-EEcCEEEEcCCccHHhhcccc
Confidence            457888888888888865  48999999998765  458776654        35 899999999998765444433

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.12  E-value=2.9e-10  Score=103.09  Aligned_cols=61  Identities=16%  Similarity=0.078  Sum_probs=47.5

Q ss_pred             CCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533           77 FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (325)
Q Consensus        77 ~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~  150 (325)
                      .....++.+.+.+.+++.++.  ++++++|++++.++  +.|.|++.+        .+ +.+|.||+|+|.++.
T Consensus       160 ~~~~~~~~~~l~~~~~~~g~~--i~~~~~v~~i~~~~--~~~~v~~~~--------g~-~~a~~vV~A~G~~s~  220 (382)
T 1ryi_A          160 HVEPYFVCKAYVKAAKMLGAE--IFEHTPVLHVERDG--EALFIKTPS--------GD-VWANHVVVASGVWSG  220 (382)
T ss_dssp             BCCHHHHHHHHHHHHHHTTCE--EETTCCCCEEECSS--SSEEEEETT--------EE-EEEEEEEECCGGGTH
T ss_pred             EEcHHHHHHHHHHHHHHCCCE--EEcCCcEEEEEEEC--CEEEEEcCC--------ce-EEcCEEEECCChhHH
Confidence            345678899999999988854  48999999998754  567676543        46 899999999997653

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=99.11  E-value=3e-10  Score=108.50  Aligned_cols=169  Identities=17%  Similarity=0.142  Sum_probs=102.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC-CCCCccCCCCCCceEee-----------cCCC--------ccCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN-CYASIWKKYSYDRLRLH-----------LAKQ--------FCQL   65 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~-~~Gg~w~~~~y~~~~~~-----------~~~~--------~~~~   65 (325)
                      ..+||+|||||++|+++|..|++.|.+|+|+|++. .+|+.+..   +.....           ....        ...+
T Consensus        20 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~---ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f   96 (641)
T 3cp8_A           20 HMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCN---PAIGGVAKGQITREIDALGGEMGKAIDATGIQF   96 (641)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSC---SEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEE
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccc---cchhhhhHHHHHHHHHhcccHHHHHHHhcCCch
Confidence            45899999999999999999999999999999985 45543321   110000           0000        0000


Q ss_pred             CC---CCCCCC--CCCCCCHHHHHHHHHHHHHHc-CCCceeeeCeEEEEEEEcCCCCcEE-EEEeecCCCCceeEEEEEe
Q 020533           66 PH---LPFPSS--YPMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWN-VKASNLLSPGREIEEYYSG  138 (325)
Q Consensus        66 ~~---~~~~~~--~~~~~~~~~~~~yl~~~a~~~-~l~~~i~~~~~V~~i~~~~~~~~~~-v~~~~~~~~~~~~~~~~~a  138 (325)
                      ..   ...+..  ......+..+.+++.+.++++ ++.   .++.+|+.+..++  +.+. |.+.++       .. +.|
T Consensus        97 ~~l~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~---I~~~~V~~L~~d~--g~V~GV~t~~G-------~~-i~A  163 (641)
T 3cp8_A           97 RMLNRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNID---LLQDTVIGVSANS--GKFSSVTVRSG-------RA-IQA  163 (641)
T ss_dssp             EEECSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEE---EEECCEEEEEEET--TEEEEEEETTS-------CE-EEE
T ss_pred             hhcccccCccccchhhhcCHHHHHHHHHHHHHhCCCCE---EEeeEEEEEEecC--CEEEEEEECCC-------cE-EEe
Confidence            00   000000  001235668888888888875 654   3566888887654  4443 655443       46 899


Q ss_pred             CeEEEcccCCCCCCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEe
Q 020533          139 RFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVR  217 (325)
Q Consensus       139 d~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r  217 (325)
                      |.||+|||.++.  .+.++|...+      .+                .++  +| +.++.+++..|.+.|.++..+..
T Consensus       164 d~VVLATG~~s~--~~i~~G~~~~------~~----------------g~~--vG-~~~a~~la~~L~~~G~kv~~l~t  215 (641)
T 3cp8_A          164 KAAILACGTFLN--GLIHIGMDHF------PG----------------GRS--TA-EPPVEGLTESLASLGFSFGRLKT  215 (641)
T ss_dssp             EEEEECCTTCBT--CEEEETTEEE------EC----------------SSS--TT-SCCBCSHHHHHHHTTCCEEEEEE
T ss_pred             CEEEECcCCCCC--ccceeeeeee------cc----------------ccc--cC-CchhhhhHHHHHhCCceEEeecC
Confidence            999999995433  2223343332      11                111  13 57788999999999998866543

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.10  E-value=5.9e-10  Score=109.01  Aligned_cols=60  Identities=10%  Similarity=0.202  Sum_probs=47.6

Q ss_pred             CHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeE-EEEEeCeEEEcccCCCC
Q 020533           79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIE-EYYSGRFLVVASGETTN  150 (325)
Q Consensus        79 ~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~-~~~~ad~vIiAtG~~~~  150 (325)
                      ....+.+.+.+.+++.|+.  ++++++|+++..++  +.|.|++.++       . + +.||.||+|+|.++.
T Consensus       410 ~p~~l~~aL~~~a~~~Gv~--i~~~t~V~~l~~~~--~~v~V~t~~G-------~~~-i~Ad~VVlAtG~~s~  470 (689)
T 3pvc_A          410 CPSDLTHALMMLAQQNGMT--CHYQHELQRLKRID--SQWQLTFGQS-------QAA-KHHATVILATGHRLP  470 (689)
T ss_dssp             CHHHHHHHHHHHHHHTTCE--EEESCCEEEEEECS--SSEEEEEC-C-------CCC-EEESEEEECCGGGTT
T ss_pred             CHHHHHHHHHHHHHhCCCE--EEeCCeEeEEEEeC--CeEEEEeCCC-------cEE-EECCEEEECCCcchh
Confidence            4567888888888888865  49999999998875  5688887654       3 6 899999999998754

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.10  E-value=3.8e-10  Score=102.37  Aligned_cols=59  Identities=10%  Similarity=0.035  Sum_probs=46.6

Q ss_pred             CCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEE-EEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533           78 VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWN-VKASNLLSPGREIEEYYSGRFLVVASGETT  149 (325)
Q Consensus        78 ~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~-v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~  149 (325)
                      .....+.+.+.+.+++.++.  ++++++|++++.++  +.|. |++.+        .+ +.||.||+|+|.++
T Consensus       146 ~~~~~l~~~l~~~~~~~Gv~--i~~~~~v~~i~~~~--~~v~gv~~~~--------g~-i~a~~VV~A~G~~s  205 (382)
T 1y56_B          146 ADPFEATTAFAVKAKEYGAK--LLEYTEVKGFLIEN--NEIKGVKTNK--------GI-IKTGIVVNATNAWA  205 (382)
T ss_dssp             ECHHHHHHHHHHHHHHTTCE--EECSCCEEEEEESS--SBEEEEEETT--------EE-EECSEEEECCGGGH
T ss_pred             ECHHHHHHHHHHHHHHCCCE--EECCceEEEEEEEC--CEEEEEEECC--------cE-EECCEEEECcchhH
Confidence            45678888898889888865  48999999998764  5676 76543        46 89999999999764

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.08  E-value=1.3e-09  Score=103.84  Aligned_cols=65  Identities=18%  Similarity=0.100  Sum_probs=48.9

Q ss_pred             CHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533           79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (325)
Q Consensus        79 ~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~  149 (325)
                      ....+...+.+.+.+.|...  +++++|+++..++ +..|.|++.+..++  +... +.|+.||+|+|.++
T Consensus       168 d~~~l~~~L~~~a~~~G~~i--~~~~~V~~l~~~~-g~v~gV~~~d~~tg--~~~~-i~A~~VV~AaG~~s  232 (561)
T 3da1_A          168 DDARLTLEIMKEAVARGAVA--LNYMKVESFIYDQ-GKVVGVVAKDRLTD--TTHT-IYAKKVVNAAGPWV  232 (561)
T ss_dssp             CHHHHHHHHHHHHHHTTCEE--EESEEEEEEEEET-TEEEEEEEEETTTC--CEEE-EEEEEEEECCGGGH
T ss_pred             cHHHHHHHHHHHHHHcCCEE--EcCCEEEEEEEcC-CeEEEEEEEEcCCC--ceEE-EECCEEEECCCcch
Confidence            45677788888888888654  9999999998864 23466888764333  2367 99999999999765

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.08  E-value=1.7e-10  Score=104.37  Aligned_cols=58  Identities=12%  Similarity=0.114  Sum_probs=46.7

Q ss_pred             CHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533           79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (325)
Q Consensus        79 ~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~  149 (325)
                      ....+...|.+.+++.|...  +++++|++++.++  +.|.|++.+        .+ +.||.||+|+|.++
T Consensus       152 ~~~~~~~~l~~~a~~~Gv~i--~~~~~V~~i~~~~--~~~~V~t~~--------g~-i~a~~VV~A~G~~s  209 (381)
T 3nyc_A          152 DTDALHQGYLRGIRRNQGQV--LCNHEALEIRRVD--GAWEVRCDA--------GS-YRAAVLVNAAGAWC  209 (381)
T ss_dssp             CHHHHHHHHHHHHHHTTCEE--ESSCCCCEEEEET--TEEEEECSS--------EE-EEESEEEECCGGGH
T ss_pred             CHHHHHHHHHHHHHHCCCEE--EcCCEEEEEEEeC--CeEEEEeCC--------CE-EEcCEEEECCChhH
Confidence            45778888888888888654  8999999998875  558887754        46 89999999999765

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=99.07  E-value=5.3e-10  Score=99.07  Aligned_cols=139  Identities=17%  Similarity=0.243  Sum_probs=81.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCCC-CccCCCC-CCceEeecCCCccCCC--CCCCCC--CCCCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYA-SIWKKYS-YDRLRLHLAKQFCQLP--HLPFPS--SYPMFV   78 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~~~G-g~w~~~~-y~~~~~~~~~~~~~~~--~~~~~~--~~~~~~   78 (325)
                      .+||+|||||++|+++|..|+++  |++|+|+|+.+.+| |.|.... +....+. +.....+.  ..++..  .+....
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~-~~~~~~L~~~Gv~~~~~G~~~~~~  157 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMR-KPADVFLDEVGVPYEDEGDYVVVK  157 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEE-TTTHHHHHHHTCCCEECSSEEEES
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcc-hHHHHHHHHcCCcccccCCeEEEe
Confidence            57999999999999999999997  99999999998776 4664322 2222222 11100000  001100  111112


Q ss_pred             CHHHHHHHHHHHHHHc-CCCceeeeCeEEEEEEEcCC---------------CCcEE---EEEee----cCCCC---cee
Q 020533           79 SRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEA---------------TNMWN---VKASN----LLSPG---REI  132 (325)
Q Consensus        79 ~~~~~~~yl~~~a~~~-~l~~~i~~~~~V~~i~~~~~---------------~~~~~---v~~~~----~~~~~---~~~  132 (325)
                      ...++.+.|.+.+.+. ++  .++++++|+++..+++               .+...   |.+..    ..+..   .+.
T Consensus       158 ~~~d~~~~L~~~a~~~~gV--~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~  235 (344)
T 3jsk_A          158 HAALFTSTVLSKVLQRPNV--KLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDP  235 (344)
T ss_dssp             CHHHHHHHHHHHHHTCTTE--EEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBC
T ss_pred             cHHHHHHHHHHHHHhCCCC--EEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCc
Confidence            3466777777777763 54  4589999998876541               02111   22210    01100   022


Q ss_pred             EEEEEeCeEEEcccCCC
Q 020533          133 EEYYSGRFLVVASGETT  149 (325)
Q Consensus       133 ~~~~~ad~vIiAtG~~~  149 (325)
                      .+ +++++||+|||+.+
T Consensus       236 ~~-i~Ak~VV~ATG~~s  251 (344)
T 3jsk_A          236 NT-INAPVIISTTGHDG  251 (344)
T ss_dssp             EE-EECSEEEECCCSSS
T ss_pred             eE-EEcCEEEECCCCCc
Confidence            67 99999999999754

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.06  E-value=2.1e-09  Score=101.50  Aligned_cols=61  Identities=15%  Similarity=0.197  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeC-eEEEcccCCC
Q 020533           82 QFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGR-FLVVASGETT  149 (325)
Q Consensus        82 ~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad-~vIiAtG~~~  149 (325)
                      .+.+.|.+.+++.++.  ++++++|+++..+++....-|.+.+..    +..+ +.|+ .||+|||.++
T Consensus       203 ~l~~~L~~~~~~~Gv~--i~~~t~v~~L~~~~~g~v~GV~~~~~g----~~~~-i~A~k~VVlAtGG~~  264 (510)
T 4at0_A          203 MLMKPLVETAEKLGVR--AEYDMRVQTLVTDDTGRVVGIVAKQYG----KEVA-VRARRGVVLATGSFA  264 (510)
T ss_dssp             HHHHHHHHHHHHTTCE--EECSEEEEEEEECTTCCEEEEEEEETT----EEEE-EEEEEEEEECCCCCT
T ss_pred             HHHHHHHHHHHHcCCE--EEecCEeEEEEECCCCcEEEEEEEECC----cEEE-EEeCCeEEEeCCChh
Confidence            8889999999988855  499999999988642333446665432    3357 8995 9999999876

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=99.06  E-value=6.6e-10  Score=100.91  Aligned_cols=59  Identities=14%  Similarity=0.140  Sum_probs=46.2

Q ss_pred             CHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533           79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (325)
Q Consensus        79 ~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~  150 (325)
                      ...++.+.+.+.+++.++..  +++++|++++.++  +.|.|++.+        .+ +.||.||+|+|.++.
T Consensus       148 ~~~~~~~~l~~~~~~~Gv~i--~~~~~v~~i~~~~--~~~~v~~~~--------g~-~~a~~vV~A~G~~~~  206 (389)
T 2gf3_A          148 FSENCIRAYRELAEARGAKV--LTHTRVEDFDISP--DSVKIETAN--------GS-YTADKLIVSMGAWNS  206 (389)
T ss_dssp             EHHHHHHHHHHHHHHTTCEE--ECSCCEEEEEECS--SCEEEEETT--------EE-EEEEEEEECCGGGHH
T ss_pred             eHHHHHHHHHHHHHHCCCEE--EcCcEEEEEEecC--CeEEEEeCC--------CE-EEeCEEEEecCccHH
Confidence            34688888888898888654  8999999998865  457776543        46 899999999997643

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=99.04  E-value=3.1e-09  Score=100.06  Aligned_cols=64  Identities=19%  Similarity=0.183  Sum_probs=49.3

Q ss_pred             CHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533           79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (325)
Q Consensus        79 ~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~  149 (325)
                      ....+...+.+.+.+.|...  +++++|+++..++  +.|.|++.+..++  +..+ +.||.||+|+|.++
T Consensus       147 ~~~~l~~~l~~~a~~~Gv~i--~~~~~V~~l~~~~--~~~~V~~~d~~~G--~~~~-i~A~~VV~AtG~~s  210 (501)
T 2qcu_A          147 DDARLVLANAQMVVRKGGEV--LTRTRATSARREN--GLWIVEAEDIDTG--KKYS-WQARGLVNATGPWV  210 (501)
T ss_dssp             CHHHHHHHHHHHHHHTTCEE--ECSEEEEEEEEET--TEEEEEEEETTTC--CEEE-EEESCEEECCGGGH
T ss_pred             cHHHHHHHHHHHHHHcCCEE--EcCcEEEEEEEeC--CEEEEEEEECCCC--CEEE-EECCEEEECCChhH
Confidence            46778888888888888654  8999999998865  6788888653222  2247 89999999999765

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.04  E-value=6.4e-10  Score=101.44  Aligned_cols=57  Identities=18%  Similarity=0.126  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533           80 RAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (325)
Q Consensus        80 ~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~  149 (325)
                      ...+...+.+.+++.++.  ++++++|++++.++  +.|.|++.+        .+ +.||.||+|+|.++
T Consensus       152 ~~~~~~~l~~~a~~~Gv~--i~~~~~V~~i~~~~--~~v~v~t~~--------g~-i~a~~VV~A~G~~s  208 (397)
T 2oln_A          152 VRGTLAALFTLAQAAGAT--LRAGETVTELVPDA--DGVSVTTDR--------GT-YRAGKVVLACGPYT  208 (397)
T ss_dssp             HHHHHHHHHHHHHHTTCE--EEESCCEEEEEEET--TEEEEEESS--------CE-EEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHcCCE--EECCCEEEEEEEcC--CeEEEEECC--------CE-EEcCEEEEcCCcCh
Confidence            356777788888888855  49999999998765  567776533        36 89999999999763

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=99.03  E-value=3.3e-09  Score=101.43  Aligned_cols=137  Identities=16%  Similarity=0.120  Sum_probs=86.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEe------------ecCCCc------------
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRL------------HLAKQF------------   62 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~------------~~~~~~------------   62 (325)
                      .+||+|||+|++||++|..|++.|.+|+|+|+.+.+||...... .++..            +....+            
T Consensus       126 ~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~~~a~-gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~  204 (572)
T 1d4d_A          126 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAA-GGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNIN  204 (572)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTGGGCC-SCEECCSSSTTGGGTCCCCTHHHHHHHHHHTTTCS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcchhhhC-CeeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCC
Confidence            56999999999999999999999999999999998887532210 00000            000000            


Q ss_pred             -----------------------cCCC------CCCCCCCC---CCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEE
Q 020533           63 -----------------------CQLP------HLPFPSSY---PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESAS  110 (325)
Q Consensus        63 -----------------------~~~~------~~~~~~~~---~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~  110 (325)
                                             ..+.      ...++...   ........+.+.|.+.+++.++.  ++++++|+++.
T Consensus       205 ~~~~v~~~~~~~~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~~~~~g~~l~~~L~~~~~~~gv~--i~~~t~v~~l~  282 (572)
T 1d4d_A          205 DPELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTD--IRLNSRVVRIL  282 (572)
T ss_dssp             CHHHHHHHHHTHHHHHHHHHHHTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCE--EESSEEEEEEE
T ss_pred             CHHHHHHHHHccHHHHHHHHhcCCccccccccCCCcCCeeEecCCCCCCHHHHHHHHHHHHHHcCCe--EEecCEEEEEE
Confidence                                   0000      00000000   01123668889999999988865  49999999997


Q ss_pred             EcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533          111 YDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (325)
Q Consensus       111 ~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~  150 (325)
                      .+++...+.|.+.+.++   +... +.+|.||+|||.++.
T Consensus       283 ~~~~g~v~GV~~~~~~G---~~~~-i~A~~VVlAtGg~~~  318 (572)
T 1d4d_A          283 EDASGKVTGVLVKGEYT---GYYV-IKADAVVIAAGGFAK  318 (572)
T ss_dssp             EC--CCEEEEEEEETTT---EEEE-EECSEEEECCCCCTT
T ss_pred             ECCCCeEEEEEEEeCCC---cEEE-EEcCEEEEeCCCCcc
Confidence            65323334566654221   3357 899999999997653

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.02  E-value=5.9e-10  Score=101.77  Aligned_cols=60  Identities=10%  Similarity=0.073  Sum_probs=45.7

Q ss_pred             CCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533           78 VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (325)
Q Consensus        78 ~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~  149 (325)
                      .....+.+.+.+.+++.++.  ++++++|+++..++ +..|.|++.+        .+ +.+|.||+|+|.++
T Consensus       171 ~~~~~~~~~l~~~~~~~g~~--i~~~~~v~~i~~~~-~~~~~v~~~~--------g~-~~a~~vV~a~G~~s  230 (405)
T 2gag_B          171 AKHDHVAWAFARKANEMGVD--IIQNCEVTGFIKDG-EKVTGVKTTR--------GT-IHAGKVALAGAGHS  230 (405)
T ss_dssp             CCHHHHHHHHHHHHHHTTCE--EECSCCEEEEEESS-SBEEEEEETT--------CC-EEEEEEEECCGGGH
T ss_pred             CCHHHHHHHHHHHHHHCCCE--EEcCCeEEEEEEeC-CEEEEEEeCC--------ce-EECCEEEECCchhH
Confidence            34568888898889888855  49999999998764 2346676654        24 88999999999754

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.00  E-value=4.1e-10  Score=96.36  Aligned_cols=50  Identities=18%  Similarity=0.288  Sum_probs=43.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEee
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLH   57 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~   57 (325)
                      +||+||||||+||++|..|+++|++|+||||++.+||.+.....++..++
T Consensus         3 ~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG~~~~~~~~~~~~d   52 (336)
T 3kkj_A            3 VPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSSKRSDAGALD   52 (336)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEEEETTEEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccccCCceee
Confidence            78999999999999999999999999999999999998765544444443

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.00  E-value=8.6e-10  Score=101.46  Aligned_cols=40  Identities=28%  Similarity=0.387  Sum_probs=37.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK   47 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~   47 (325)
                      +||+|||||++||++|+.|+++|.+|+|+|+++.+||...
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~   40 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFT   40 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCCCCcee
Confidence            4899999999999999999999999999999999987544

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.00  E-value=1.3e-09  Score=100.55  Aligned_cols=40  Identities=28%  Similarity=0.290  Sum_probs=37.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK   47 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~   47 (325)
                      +||+|||||++|+++|+.|+++|.+|+|+|+++.+||...
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   41 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAY   41 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCccCeec
Confidence            6999999999999999999999999999999998988543

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=98.99  E-value=6.4e-10  Score=103.90  Aligned_cols=195  Identities=10%  Similarity=0.006  Sum_probs=104.8

Q ss_pred             eEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCc--cCCCCC-----C--ceE-------------ee---------
Q 020533            9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI--WKKYSY-----D--RLR-------------LH---------   57 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~--w~~~~y-----~--~~~-------------~~---------   57 (325)
                      ||+|||||++|+++|..|++.|.+|+|+||. ..+|.  |.....     +  ...             ++         
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~-~~~g~s~~a~Ggi~~~~~~~d~~~~~~~d~l~~g~~~~d~~~v~~~~~   79 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR-IDGGSTPIAKGGVAASVGSDDSPELHAQDTIRVGDGLCDVKTVNYVTS   79 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSS-TTCSSGGGCCSCEECCCSTTCCHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCchHHHHhCCeEEeCCCCCCHHHHHHHHHHhcCCcCCHHHHHHHHH
Confidence            7999999999999999999999999999999 45553  111100     0  000             00         


Q ss_pred             -cCC-------CccCCCC-------CCCCCC-CCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcE-EE
Q 020533           58 -LAK-------QFCQLPH-------LPFPSS-YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMW-NV  120 (325)
Q Consensus        58 -~~~-------~~~~~~~-------~~~~~~-~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~-~v  120 (325)
                       .+.       .-..|..       ..++.. ........++.+.|.+.+++.++..  +++++| ++..++  +.. -+
T Consensus        80 ~~~~~i~~l~~~Gv~~~~~~~~~~g~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~i--~~~~~v-~l~~~~--~~v~Gv  154 (472)
T 2e5v_A           80 EAKNVIETFESWGFEFEEDLRLEGGHTKRRVLHRTDETGREIFNFLLKLAREEGIPI--IEDRLV-EIRVKD--GKVTGF  154 (472)
T ss_dssp             HHHHHHHHHHHTTCCCCSSCBCCTTCSSCCEECSSSCHHHHHHHHHHHHHHHTTCCE--ECCCEE-EEEEET--TEEEEE
T ss_pred             HHHHHHHHHHHcCCCCCcccccccCcCcCcEEEeCCCCHHHHHHHHHHHHHhCCCEE--EECcEE-EEEEeC--CEEEEE
Confidence             000       0000100       000000 0011235678888888887778665  899999 887654  332 23


Q ss_pred             EEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCC-CccccccCCCCCccEEecC-----CCCCCCCCCC-CeEEEEC
Q 020533          121 KASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIR-GLCSFCSSATGTGEVIHST-----QYKNGKPYGG-KNVLVVG  193 (325)
Q Consensus       121 ~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~-g~~~~~~~~~~~g~~~~~~-----~~~~~~~~~~-~~v~VvG  193 (325)
                      ...+. +     .+ +.+|.||+|||.++  ..+.++ +....      .|.-+...     ...+....+. ..++++|
T Consensus       155 ~v~~~-~-----g~-~~a~~VVlAtGg~~--~~~~~~~~~~~~------tGdgi~~a~~aGa~~~d~e~~q~~p~~~~~g  219 (472)
T 2e5v_A          155 VTEKR-G-----LV-EDVDKLVLATGGYS--YLYEYSSTQSTN------IGDGMAIAFKAGTILADMEFVQFHPTVTSLD  219 (472)
T ss_dssp             EETTT-E-----EE-CCCSEEEECCCCCG--GGSSSBSSCTTC------SCHHHHHHHHTTCCEECTTCEEEEEEEECGG
T ss_pred             EEEeC-C-----Ce-EEeeeEEECCCCCc--ccCccccCCCCC------chHHHHHHHHcCCCEeCCcceEEEeEEEccC
Confidence            33321 1     45 78999999999543  333331 11111      22211100     0111111111 1344557


Q ss_pred             cCCCHHHHHHHHhhccCeEEEEEecCCeeechhhH
Q 020533          194 SGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV  228 (325)
Q Consensus       194 ~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~  228 (325)
                      +|  +.+++..+...|..+ +..+.. .++++++.
T Consensus       220 gg--~~~~ae~~~~~G~~~-v~~~g~-rf~~~~~~  250 (472)
T 2e5v_A          220 GE--VFLLTETLRGEGAQI-INENGE-RFLFNYDK  250 (472)
T ss_dssp             GC--CEECCTHHHHTTCEE-EETTCC-CGGGGTCT
T ss_pred             CC--ceeeehhhcCCceEE-ECCCCC-CCCccCCc
Confidence            66  777777777778766 444444 67776543

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=98.98  E-value=1.6e-09  Score=97.70  Aligned_cols=109  Identities=16%  Similarity=0.178  Sum_probs=69.7

Q ss_pred             CCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecC-CCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHH
Q 020533            5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERE-NCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF   83 (325)
Q Consensus         5 ~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~-~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (325)
                      ...+||+|||||++||++|..|.+.|++|+|+|++ +.+||.|.......   ..+..+ ......+......+   ...
T Consensus        42 ~~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~t~~~~~---~~~~~~-~~~~~~~e~G~~~~---~~~  114 (376)
T 2e1m_A           42 GPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFHAKK---GEPSPF-ADPAQYAEAGAMRL---PSF  114 (376)
T ss_dssp             CSCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCCEECCCT---TSCCSS-SSTTCCEESSCCCE---ETT
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCceeeecccc---cccccc-cCCCcEEecCceee---cch
Confidence            34689999999999999999999999999999999 99999877532211   011000 00000000000001   122


Q ss_pred             HHHHHHHHHHcCCCceeeeCeE--------------EEEEEEcCCCCcEEEEE
Q 020533           84 IEHLDHYVSHFNIGPSIRYQRS--------------VESASYDEATNMWNVKA  122 (325)
Q Consensus        84 ~~yl~~~a~~~~l~~~i~~~~~--------------V~~i~~~~~~~~~~v~~  122 (325)
                      ..++.++++++++..++.++..              +....|++  .+|++.+
T Consensus       115 ~~~~~~~~~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~w~~~~  165 (376)
T 2e1m_A          115 HPLTLALIDKLGLKRRLFFNVDIDPQTGNQDAPVPPVFYKSFKD--GKTWTNG  165 (376)
T ss_dssp             CHHHHHHHHHTTCCEEEECSSCCCTTSSBCSSCCCCCEEECSST--TCEEESS
T ss_pred             HHHHHHHHHHcCCCcceeeccccccccccccccccccceeeecc--ceeEecc
Confidence            4577888999999877666665              44566665  3676643

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.98  E-value=3.4e-10  Score=103.75  Aligned_cols=36  Identities=22%  Similarity=0.367  Sum_probs=33.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCY   42 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~~~   42 (325)
                      .+||+|||||++|+++|+.|+++  |++|+|+|+....
T Consensus        36 ~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~   73 (405)
T 3c4n_A           36 AFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLP   73 (405)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSS
T ss_pred             cCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            37999999999999999999999  9999999997643

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=98.97  E-value=1.1e-09  Score=101.94  Aligned_cols=39  Identities=21%  Similarity=0.369  Sum_probs=36.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcC------CCeEEEecCCCCCCc
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQS------IPYVILERENCYASI   45 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g------~~v~v~e~~~~~Gg~   45 (325)
                      ++||+|||||++||++|..|+++|      ++|+|+|+++.+||.
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~   49 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGK   49 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTT
T ss_pred             CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCce
Confidence            479999999999999999999999      999999999999874

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=98.97  E-value=8.6e-10  Score=101.48  Aligned_cols=41  Identities=24%  Similarity=0.451  Sum_probs=37.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK   48 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~   48 (325)
                      +||+|||||++||++|..|+++|.+|+|+|+++.+||....
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~   41 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFTN   41 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSSE
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCceeEE
Confidence            48999999999999999999999999999999999886543

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.94  E-value=8.1e-10  Score=104.98  Aligned_cols=62  Identities=8%  Similarity=0.087  Sum_probs=46.6

Q ss_pred             CCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533           78 VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (325)
Q Consensus        78 ~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~  150 (325)
                      ..+.++.++|.+.+++.++..  +++ +|++++.+++...+.|++.++       .+ +.+|.||.|+|.++.
T Consensus       162 i~~~~l~~~L~~~a~~~gv~~--~~~-~v~~i~~~~~g~~~~v~~~~g-------~~-i~ad~vV~A~G~~s~  223 (538)
T 2aqj_A          162 FDAHLVADFLKRWAVERGVNR--VVD-EVVDVRLNNRGYISNLLTKEG-------RT-LEADLFIDCSGMRGL  223 (538)
T ss_dssp             ECHHHHHHHHHHHHHHTTCEE--EEC-CEEEEEECTTSCEEEEEETTS-------CE-ECCSEEEECCGGGCC
T ss_pred             EeHHHHHHHHHHHHHHCCCEE--EEe-eEeEEEEcCCCcEEEEEECCC-------cE-EEeCEEEECCCCchh
Confidence            456889999999999888654  888 799998754322356666543       46 899999999997654

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.94  E-value=2.4e-09  Score=94.28  Aligned_cols=104  Identities=22%  Similarity=0.343  Sum_probs=65.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCCC-CccCCC-CCCceEeecCC--CccCCCCCCCCC--CCCCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYA-SIWKKY-SYDRLRLHLAK--QFCQLPHLPFPS--SYPMFV   78 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~~~G-g~w~~~-~y~~~~~~~~~--~~~~~~~~~~~~--~~~~~~   78 (325)
                      .+||+|||||++|+++|..|++.  |.+|+|+|+.+.+| |.|... .+....+....  .+..+ ..++..  .+....
T Consensus        65 ~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~-Gv~~~~~g~~~~~~  143 (326)
T 2gjc_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQEL-EIPYEDEGDYVVVK  143 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHT-TCCCEECSSEEEES
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccCcccchhhhhhHHHHHHHhh-CcccccCCCeEEEc
Confidence            35999999999999999999998  99999999998886 566422 12222222110  00000 001110  101112


Q ss_pred             CHHHHHHHHHHHHHHc-CCCceeeeCeEEEEEEEcC
Q 020533           79 SRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDE  113 (325)
Q Consensus        79 ~~~~~~~yl~~~a~~~-~l~~~i~~~~~V~~i~~~~  113 (325)
                      ...++...|.+.+... ++.  ++.+++|+++..++
T Consensus       144 ~~~~~~~~L~~~a~~~~GV~--i~~~~~V~~Ll~~~  177 (326)
T 2gjc_A          144 HAALFISTVLSKVLQLPNVK--LFNATCVEDLVTRP  177 (326)
T ss_dssp             CHHHHHHHHHHHHHTSTTEE--EETTEEEEEEEECC
T ss_pred             chHHHHHHHHHHHHHhcCcE--EEecceeeeeeecc
Confidence            4567777787777764 544  48899999998764

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.93  E-value=9.8e-09  Score=98.36  Aligned_cols=145  Identities=15%  Similarity=0.108  Sum_probs=87.2

Q ss_pred             CCCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC-c-cC-------CCC--CCceEe---e---cCCCc-
Q 020533            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS-I-WK-------KYS--YDRLRL---H---LAKQF-   62 (325)
Q Consensus         1 M~~~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg-~-w~-------~~~--y~~~~~---~---~~~~~-   62 (325)
                      |..+...+||+|||||++||++|..|++.|.+|+|+||.+..+| + |.       ...  -+....   +   ..... 
T Consensus         1 m~~~~~~~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~~~~g~s~~a~GGi~~~~~~~~~ds~~~~~~d~~~~g~~~~   80 (588)
T 2wdq_A            1 MKLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIG   80 (588)
T ss_dssp             CCSCEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSGGGGCCSCEECCCCSSSCCCHHHHHHHHHHHTTTCS
T ss_pred             CCCccccCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcchhhCCccEEcCCCCCCCCHHHHHHHHHHhcCCCC
Confidence            55555568999999999999999999999999999999876532 1 11       100  000000   0   00000 


Q ss_pred             ---------------------cCCCCCC----------CCCC--------C-CC-C---CCHHHHHHHHHHHHHHcCCCc
Q 020533           63 ---------------------CQLPHLP----------FPSS--------Y-PM-F---VSRAQFIEHLDHYVSHFNIGP   98 (325)
Q Consensus        63 ---------------------~~~~~~~----------~~~~--------~-~~-~---~~~~~~~~yl~~~a~~~~l~~   98 (325)
                                           ...++..          .+..        . .. +   .....+...|.+.+.+.++. 
T Consensus        81 d~~~v~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~~g~~~~~~~~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~-  159 (588)
T 2wdq_A           81 DQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTT-  159 (588)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCCCCBCTTSSBCEECCTTCBSTTTCSBCCCEECSTTCHHHHHHHHHHHHHHHTTCE-
T ss_pred             CHHHHHHHHHhHHHHHHHHHHcCCCcccCCCCcEeeeecCCccccccccCcceEEEcCCCCHHHHHHHHHHHHHhCCCE-
Confidence                                 0000000          0000        0 00 0   12367888888888888754 


Q ss_pred             eeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533           99 SIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (325)
Q Consensus        99 ~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~  150 (325)
                       ++++++|+++..+++...+.|...+..++  +... +.++.||+|||.++.
T Consensus       160 -i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g--~~~~-i~A~~VVlAtGg~~~  207 (588)
T 2wdq_A          160 -IFSEWYALDLVKNQDGAVVGCTALCIETG--EVVY-FKARATVLATGGAGR  207 (588)
T ss_dssp             -EEETEEEEEEEECTTSCEEEEEEEETTTC--CEEE-EEEEEEEECCCCCGG
T ss_pred             -EEeCcEEEEEEECCCCEEEEEEEEEcCCC--eEEE-EEcCEEEECCCCCcc
Confidence             59999999998753233445665442222  3357 899999999997653

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=98.88  E-value=2.4e-09  Score=100.85  Aligned_cols=58  Identities=19%  Similarity=0.362  Sum_probs=45.3

Q ss_pred             CCCCCCCCeEEEECCChHHHHHHHHHHhc-CCCeEEEecCCCCCCccCC-CCCCceEeec
Q 020533            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQ-SIPYVILERENCYASIWKK-YSYDRLRLHL   58 (325)
Q Consensus         1 M~~~~~~~~v~IIGaG~~Gl~~a~~L~~~-g~~v~v~e~~~~~Gg~w~~-~~y~~~~~~~   58 (325)
                      |+.+...+||+|||||++||+||+.|+++ |++|+|+|+++++||..+. ...++..++.
T Consensus         4 Ms~p~~~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG~~~T~~~~~G~~~D~   63 (513)
T 4gde_A            4 MTHPDISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDV   63 (513)
T ss_dssp             --CCSEEEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCGGGCEEECTTSCEEES
T ss_pred             CCCCCCCCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcCCeeeEEecCCEEEEe
Confidence            55555678999999999999999999884 9999999999999996543 2344555443

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=98.88  E-value=5e-09  Score=99.26  Aligned_cols=62  Identities=13%  Similarity=0.220  Sum_probs=45.7

Q ss_pred             CCHHHHHHHHHHHHHH-cCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533           78 VSRAQFIEHLDHYVSH-FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (325)
Q Consensus        78 ~~~~~~~~yl~~~a~~-~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~  150 (325)
                      ..+..+.++|.+.+++ .++..  +++ +|++++.+++...+.|++.++       .+ +.+|.||.|+|.++.
T Consensus       172 ~~r~~l~~~L~~~a~~~~Gv~i--~~~-~v~~i~~~~~g~~~~v~~~~g-------~~-i~ad~vV~AdG~~S~  234 (526)
T 2pyx_A          172 LNAAKFSQLLTEHCTQKLGVTH--IRD-HVSQIINNQHGDIEKLITKQN-------GE-ISGQLFIDCTGAKSL  234 (526)
T ss_dssp             ECHHHHHHHHHHHHHHTSCCEE--EEC-CEEEEEECTTSCEEEEEESSS-------CE-EECSEEEECSGGGCC
T ss_pred             EcHHHHHHHHHHHHHhcCCCEE--EEe-EEEEEEecCCCcEEEEEECCC-------CE-EEcCEEEECCCcchH
Confidence            4678999999999998 78654  888 599998754222235555442       46 899999999997654

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.84  E-value=1.1e-08  Score=97.48  Aligned_cols=62  Identities=15%  Similarity=0.165  Sum_probs=47.1

Q ss_pred             CCHHHHHHHHHHHHHHc-CCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533           78 VSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (325)
Q Consensus        78 ~~~~~~~~yl~~~a~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~  150 (325)
                      ..+.++.++|.+.+++. |+..  +++ +|++++.+++...+.|++.++       .+ +.+|.||.|+|.++.
T Consensus       191 ~~~~~l~~~L~~~~~~~~Gv~i--~~~-~V~~i~~~~~g~~~~v~~~~G-------~~-i~ad~vI~A~G~~S~  253 (550)
T 2e4g_A          191 FDAHLVADFLRRFATEKLGVRH--VED-RVEHVQRDANGNIESVRTATG-------RV-FDADLFVDCSGFRGL  253 (550)
T ss_dssp             ECHHHHHHHHHHHHHHHSCCEE--EEC-CEEEEEECTTSCEEEEEETTS-------CE-EECSEEEECCGGGCC
T ss_pred             EcHHHHHHHHHHHHHhcCCcEE--EEC-eEeEEEEcCCCCEEEEEECCC-------CE-EECCEEEECCCCchh
Confidence            57788999999999988 8654  888 899998754222355665543       56 899999999997654

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=98.82  E-value=9.7e-09  Score=95.86  Aligned_cols=39  Identities=28%  Similarity=0.371  Sum_probs=36.7

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCC--CeEEEecCCCCCCcc
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSI--PYVILERENCYASIW   46 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~--~v~v~e~~~~~Gg~w   46 (325)
                      +||+|||||++||++|++|+++|.  +|+|+|+++++||..
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG~~   43 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWI   43 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBTTC
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCce
Confidence            699999999999999999999999  999999999998854

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=98.82  E-value=1.8e-08  Score=96.28  Aligned_cols=65  Identities=17%  Similarity=0.158  Sum_probs=45.9

Q ss_pred             CHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533           79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (325)
Q Consensus        79 ~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~  149 (325)
                      ....+...+.+.+.+.|...  +++++|+++..++ +..|.|++.+..++  +..+ +.|+.||+|+|.++
T Consensus       186 ~~~~l~~~l~~~a~~~Ga~i--~~~t~V~~l~~~~-~~v~gV~~~d~~tg--~~~~-i~A~~VV~AaG~ws  250 (571)
T 2rgh_A          186 NDARLVIDNIKKAAEDGAYL--VSKMKAVGFLYEG-DQIVGVKARDLLTD--EVIE-IKAKLVINTSGPWV  250 (571)
T ss_dssp             CHHHHHHHHHHHHHHTTCEE--ESSEEEEEEEEET-TEEEEEEEEETTTC--CEEE-EEBSCEEECCGGGH
T ss_pred             chHHHHHHHHHHHHHcCCeE--EeccEEEEEEEeC-CEEEEEEEEEcCCC--CEEE-EEcCEEEECCChhH
Confidence            34556666667778888654  8999999998865 23467777653222  2247 89999999999765

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.82  E-value=2.6e-08  Score=92.53  Aligned_cols=100  Identities=17%  Similarity=0.179  Sum_probs=78.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|++|+.+|..|++.|.+|+++|+.+.+..                                 ....++.+.
T Consensus       167 ~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~---------------------------------~~~~~~~~~  213 (455)
T 2yqu_A          167 PKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILP---------------------------------TMDLEVSRA  213 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT---------------------------------TSCHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCcccc---------------------------------ccCHHHHHH
Confidence            46899999999999999999999999999999875310                                 012467788


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~  153 (325)
                      +.+.+++.++..  +++++|++++.++  +.+.+++.++       .+ +.+|.||+|+|.  .|+.
T Consensus       214 l~~~l~~~Gv~i--~~~~~V~~i~~~~--~~v~v~~~~g-------~~-i~~D~vv~A~G~--~p~~  266 (455)
T 2yqu_A          214 AERVFKKQGLTI--RTGVRVTAVVPEA--KGARVELEGG-------EV-LEADRVLVAVGR--RPYT  266 (455)
T ss_dssp             HHHHHHHHTCEE--ECSCCEEEEEEET--TEEEEEETTS-------CE-EEESEEEECSCE--EECC
T ss_pred             HHHHHHHCCCEE--EECCEEEEEEEeC--CEEEEEECCC-------eE-EEcCEEEECcCC--CcCC
Confidence            888888888655  9999999998764  4566665432       56 899999999994  4544

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=98.81  E-value=3.2e-09  Score=100.14  Aligned_cols=62  Identities=18%  Similarity=0.168  Sum_probs=47.2

Q ss_pred             CCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533           78 VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (325)
Q Consensus        78 ~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~  150 (325)
                      ..+..+.++|.+.+++.|+..  +++ +|++++.+++...+.|++.++       .+ +.+|.||.|+|.++.
T Consensus       170 ~~~~~l~~~L~~~a~~~gv~~--~~~-~v~~i~~~~~~~~~~v~~~~g-------~~-~~ad~vV~A~G~~S~  231 (511)
T 2weu_A          170 FDADEVARYLSEYAIARGVRH--VVD-DVQHVGQDERGWISGVHTKQH-------GE-ISGDLFVDCTGFRGL  231 (511)
T ss_dssp             ECHHHHHHHHHHHHHHTTCEE--EEC-CEEEEEECTTSCEEEEEESSS-------CE-EECSEEEECCGGGCC
T ss_pred             EcHHHHHHHHHHHHHHCCCEE--EEC-eEeEEEEcCCCCEEEEEECCC-------CE-EEcCEEEECCCcchH
Confidence            567899999999999888654  888 899998754222355666543       46 899999999997654

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=98.81  E-value=1.1e-08  Score=102.20  Aligned_cols=131  Identities=15%  Similarity=0.116  Sum_probs=83.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCCCC---CCccCCCC---------------------CCceE-----
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSI-PYVILERENCY---ASIWKKYS---------------------YDRLR-----   55 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~~~---Gg~w~~~~---------------------y~~~~-----   55 (325)
                      .++||+|||||++|+++|+.|+++|. +|+|+|+++..   |++|+...                     |..+.     
T Consensus         3 ~~~dVvIIGgGi~Gls~A~~La~~G~~~V~vlE~~~~~~~~gss~~~~G~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~   82 (830)
T 1pj5_A            3 STPRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLNMPGGSTSHAPGLVFQTNPSKTMASFAKYTVEKLLSLTEDGVS   82 (830)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCTTCCCSGGGTCCCEECCCCSCHHHHHHHHHHHHHHHHCEETTEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCcccceeCCceeecCCCCHHHHHHHHHHHHHHHHHHhhCCC
Confidence            35799999999999999999999998 99999998753   33443210                     00000     


Q ss_pred             ---------eecCC--------------------Ccc-------CCCCCCCCCC-------CCCCCCHHHHHHHHHHHHH
Q 020533           56 ---------LHLAK--------------------QFC-------QLPHLPFPSS-------YPMFVSRAQFIEHLDHYVS   92 (325)
Q Consensus        56 ---------~~~~~--------------------~~~-------~~~~~~~~~~-------~~~~~~~~~~~~yl~~~a~   92 (325)
                               +....                    ...       .++.......       .........+...|.+.++
T Consensus        83 ~~~~~G~l~~~~~~~~~~~l~~~~~~~~~~G~~~~~l~~~e~~~~~p~l~~~~~~gg~~~~~~g~v~p~~l~~~L~~~a~  162 (830)
T 1pj5_A           83 CFNQVGGLEVATTETRLADLKRKLGYAAAWGIEGRLLSPAECQELYPLLDGENILGGLHVPSDGLASAARAVQLLIKRTE  162 (830)
T ss_dssp             SEECCCEEEEESSHHHHHHHHHHHHHHHHHTCCCEEECHHHHHHHCTTSCGGGCCEEEEETTCEEECHHHHHHHHHHHHH
T ss_pred             CeeecCcEEEEeCHHHHHHHHHHHHHHHHcCCCeEEECHHHHHHhCccCCccceEEEEEECCCceEcHHHHHHHHHHHHH
Confidence                     00000                    000       0000000000       0112355688888888898


Q ss_pred             HcCCCceeeeCeEEEEEEEcCCCCc-EEEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533           93 HFNIGPSIRYQRSVESASYDEATNM-WNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (325)
Q Consensus        93 ~~~l~~~i~~~~~V~~i~~~~~~~~-~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~  149 (325)
                      +.|+.  ++++++|++++.++  +. +.|.+.+        .+ +.||.||+|+|.++
T Consensus       163 ~~Gv~--i~~~t~V~~i~~~~--~~v~~V~t~~--------G~-i~Ad~VV~AaG~~s  207 (830)
T 1pj5_A          163 SAGVT--YRGSTTVTGIEQSG--GRVTGVQTAD--------GV-IPADIVVSCAGFWG  207 (830)
T ss_dssp             HTTCE--EECSCCEEEEEEET--TEEEEEEETT--------EE-EECSEEEECCGGGH
T ss_pred             HcCCE--EECCceEEEEEEeC--CEEEEEEECC--------cE-EECCEEEECCccch
Confidence            88855  48899999998764  44 3465543        46 89999999999765

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=98.81  E-value=1.4e-08  Score=96.36  Aligned_cols=38  Identities=21%  Similarity=0.415  Sum_probs=34.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg   44 (325)
                      ..+||+|||||++||++|..|++ |.+|+|+||.+..+|
T Consensus         7 ~~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~~g   44 (540)
T 1chu_A            7 HSCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVTEG   44 (540)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTTC-
T ss_pred             CCCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCCCC
Confidence            35899999999999999999999 999999999987654

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=98.77  E-value=7.4e-08  Score=92.51  Aligned_cols=140  Identities=15%  Similarity=0.151  Sum_probs=81.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcC--CCeEEEecCCCCCC--------ccCCCC-CCceE------eecCCCc-------
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYAS--------IWKKYS-YDRLR------LHLAKQF-------   62 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g--~~v~v~e~~~~~Gg--------~w~~~~-y~~~~------~~~~~~~-------   62 (325)
                      .+||+|||||++||++|..|++.|  .+|+|+|+.+..++        ...... .+...      +......       
T Consensus         5 ~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~~s~~a~GGi~~~~~~~ds~~~~~~d~~~~g~~~~d~~~v~   84 (602)
T 1kf6_A            5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVD   84 (602)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTCSCHHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCChHHHhcCccEEeCCCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence            479999999999999999999999  99999999865432        111000 00000      0000000       


Q ss_pred             ---------------cCCCCCCCC------CCCCC-------C---CCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEE
Q 020533           63 ---------------CQLPHLPFP------SSYPM-------F---VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASY  111 (325)
Q Consensus        63 ---------------~~~~~~~~~------~~~~~-------~---~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~  111 (325)
                                     ...++...+      ..+..       +   .....+...|.+.+.+.+ ...++++++|+++..
T Consensus        85 ~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~d~tg~~l~~~L~~~~~~~g-nv~i~~~~~v~~l~~  163 (602)
T 1kf6_A           85 YFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFP-QIQRFDEHFVLDILV  163 (602)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCBCTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCT-TEEEEETEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHcCCCcccCCCCcccccccCCccCCeEEEcCCCCHHHHHHHHHHHHHhCC-CcEEEeCCEEEEEEE
Confidence                           000100000      00000       0   124577888888877766 134599999999987


Q ss_pred             cCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCC
Q 020533          112 DEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNP  151 (325)
Q Consensus       112 ~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p  151 (325)
                      ++ ...+.|...+...+  +... +.++.||+|||.++..
T Consensus       164 ~~-g~v~Gv~~~~~~~G--~~~~-i~A~~VVlAtGg~s~~  199 (602)
T 1kf6_A          164 DD-GHVRGLVAMNMMEG--TLVQ-IRANAVVMATGGAGRV  199 (602)
T ss_dssp             ET-TEEEEEEEEETTTT--EEEE-EECSCEEECCCCCGGG
T ss_pred             eC-CEEEEEEEEEcCCC--cEEE-EEcCeEEECCCCCccc
Confidence            64 22233444332222  3347 8999999999987643

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=98.75  E-value=5.9e-08  Score=95.52  Aligned_cols=39  Identities=33%  Similarity=0.457  Sum_probs=36.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg   44 (325)
                      ..+||+|||||++|+++|..|++.|++|+|+|+.+.+||
T Consensus       335 ~~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~gg  373 (776)
T 4gut_A          335 HNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGG  373 (776)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEecccceec
Confidence            357999999999999999999999999999999998888

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=98.72  E-value=1.8e-09  Score=98.11  Aligned_cols=119  Identities=17%  Similarity=0.137  Sum_probs=74.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCC---CCc--cCCCCCC----------c-e----EeecCCCccCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCY---ASI--WKKYSYD----------R-L----RLHLAKQFCQL   65 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~~~---Gg~--w~~~~y~----------~-~----~~~~~~~~~~~   65 (325)
                      +||+|||||++|+++|..|++.  |++|+|+|+++.+   |..  +..+...          . +    .......+.. 
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   79 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVH-   79 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGGCCEEECCEEEEE-
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHHhhccccceEEEe-
Confidence            4899999999999999999999  9999999998766   221  0001000          0 0    0000000000 


Q ss_pred             CCCCCCCC-CC--CCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEE
Q 020533           66 PHLPFPSS-YP--MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLV  142 (325)
Q Consensus        66 ~~~~~~~~-~~--~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vI  142 (325)
                      ........ ..  ....+.++.++|.+.+.+.++.  ++++++|++++..                    .. +.+|.||
T Consensus        80 ~g~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~--i~~~~~v~~i~~~--------------------~~-~~ad~vV  136 (381)
T 3c4a_A           80 HNEPSLMSTGVLLCGVERRGLVHALRDKCRSQGIA--IRFESPLLEHGEL--------------------PL-ADYDLVV  136 (381)
T ss_dssp             SSSEEECCCCSCEEEEEHHHHHHHHHHHHHHTTCE--EETTCCCCSGGGC--------------------CG-GGCSEEE
T ss_pred             CCeeEEecCCCceeeecHHHHHHHHHHHHHHCCCE--EEeCCEeccchhc--------------------cc-ccCCEEE
Confidence            00000000 00  1257889999999999988754  5999998776421                    12 5689999


Q ss_pred             EcccCCCC
Q 020533          143 VASGETTN  150 (325)
Q Consensus       143 iAtG~~~~  150 (325)
                      .|+|.+|.
T Consensus       137 ~AdG~~S~  144 (381)
T 3c4a_A          137 LANGVNHK  144 (381)
T ss_dssp             ECCGGGGG
T ss_pred             ECCCCCch
Confidence            99998765

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=98.72  E-value=9e-08  Score=92.01  Aligned_cols=138  Identities=17%  Similarity=0.146  Sum_probs=81.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC--------ccCCCC---CCceEee------cCCC--------
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS--------IWKKYS---YDRLRLH------LAKQ--------   61 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg--------~w~~~~---y~~~~~~------~~~~--------   61 (325)
                      .+||+|||||++||++|..|++.|.+|+|+||....++        .+....   .+.....      ....        
T Consensus        18 ~~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~~~~g~s~~a~GGi~a~~~~~~~ds~~~~~~dtl~~g~~l~d~~~v~   97 (621)
T 2h88_A           18 EFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEDDNWRWHFYDTVKGSDWLGDQDAIH   97 (621)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSGGGGCCSCEECCCCSSSCCCHHHHHHHHHHHTTTCSCHHHHH
T ss_pred             cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCchhhCCCcEecCCCCCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence            47999999999999999999999999999999874432        221100   0000000      0000        


Q ss_pred             ------------c--cCCCCCC----------CCCCC----------CC-C---CCHHHHHHHHHHHHHHcCCCceeeeC
Q 020533           62 ------------F--CQLPHLP----------FPSSY----------PM-F---VSRAQFIEHLDHYVSHFNIGPSIRYQ  103 (325)
Q Consensus        62 ------------~--~~~~~~~----------~~~~~----------~~-~---~~~~~~~~yl~~~a~~~~l~~~i~~~  103 (325)
                                  +  ...++..          ++...          +. +   .....+...|.+.+.+.++.  ++++
T Consensus        98 ~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~g~~~~~~R~~~~~d~tG~~l~~~L~~~~~~~gv~--i~~~  175 (621)
T 2h88_A           98 YMTEQAPAAVIELENYGMPFSRTEEGKIYQRAFGGQSLQFGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTS--YFVE  175 (621)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCBCTTSSBCEECCTTCBSTTTTSCBCCCEECSTTCHHHHHHHHHHHHHTTSCCE--EEET
T ss_pred             HHHHHHHHHHHHHHHcCCCcccCCCCceeccccCcccccccCCCcceeEEEecCCCHHHHHHHHHHHHHhCCCE--EEEc
Confidence                        0  0001000          00000          00 1   13457788888888777754  5999


Q ss_pred             eEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533          104 RSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (325)
Q Consensus       104 ~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~  150 (325)
                      +.|+++..++ ....-|...+..++  +... +.++.||+|||.++.
T Consensus       176 ~~v~~Li~~~-g~v~Gv~~~~~~~G--~~~~-i~A~~VVlATGG~~~  218 (621)
T 2h88_A          176 YFALDLLMEN-GECRGVIALCIEDG--TIHR-FRAKNTVIATGGYGR  218 (621)
T ss_dssp             EEEEEEEEET-TEEEEEEEEETTTC--CEEE-EEEEEEEECCCCCGG
T ss_pred             eEEEEEEEEC-CEEEEEEEEEcCCC--cEEE-EEcCeEEECCCcccc
Confidence            9999997653 22234555432222  3357 899999999998764

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=98.71  E-value=2.1e-07  Score=90.06  Aligned_cols=37  Identities=16%  Similarity=0.318  Sum_probs=34.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY   42 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~   42 (325)
                      ..+||+|||||++||++|..|++.|.+|+|+||.+..
T Consensus         4 ~~~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~~~   40 (660)
T 2bs2_A            4 QYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVK   40 (660)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGG
T ss_pred             ccccEEEECchHHHHHHHHHHHHCCCcEEEEeccCCC
Confidence            3579999999999999999999999999999998754

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.70  E-value=1.1e-07  Score=86.22  Aligned_cols=98  Identities=14%  Similarity=0.062  Sum_probs=77.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++|+.+.+...                                ....++.++
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~--------------------------------~~~~~~~~~  192 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPG--------------------------------LLHPAAAKA  192 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT--------------------------------TSCHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhc--------------------------------ccCHHHHHH
Confidence            568999999999999999999999999999998753210                                012467788


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET  148 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~  148 (325)
                      +.+.+++.++..  +++++|.+++.++  +.+.|++.++       .+ +.+|.||+|+|..
T Consensus       193 l~~~l~~~gv~i--~~~~~v~~i~~~~--~~~~v~~~~g-------~~-i~~d~vv~a~G~~  242 (384)
T 2v3a_A          193 VQAGLEGLGVRF--HLGPVLASLKKAG--EGLEAHLSDG-------EV-IPCDLVVSAVGLR  242 (384)
T ss_dssp             HHHHHHTTTCEE--EESCCEEEEEEET--TEEEEEETTS-------CE-EEESEEEECSCEE
T ss_pred             HHHHHHHcCCEE--EeCCEEEEEEecC--CEEEEEECCC-------CE-EECCEEEECcCCC
Confidence            888888888654  9999999998754  4567776543       56 8999999999943

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=98.70  E-value=1.1e-07  Score=91.94  Aligned_cols=36  Identities=17%  Similarity=0.269  Sum_probs=33.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhc------CCCeEEEecCCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQ------SIPYVILERENCY   42 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~------g~~v~v~e~~~~~   42 (325)
                      .+||+|||||++||++|..|++.      |.+|+|+||....
T Consensus        22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~~   63 (662)
T 3gyx_A           22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLE   63 (662)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCTT
T ss_pred             EcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCCC
Confidence            58999999999999999999997      9999999997643

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.69  E-value=1.3e-07  Score=88.00  Aligned_cols=106  Identities=16%  Similarity=0.126  Sum_probs=80.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++|+.+.+..                                 ....++.++
T Consensus       169 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------~~~~~~~~~  215 (464)
T 2eq6_A          169 PKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILP---------------------------------QGDPETAAL  215 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST---------------------------------TSCHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCcccc---------------------------------ccCHHHHHH
Confidence            46899999999999999999999999999999875321                                 012467788


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p  154 (325)
                      +.+.+++.++..  +++++|.+++.++  +.+.|++.+..++  +..+ +.+|.||+|+|  ..|+.+
T Consensus       216 l~~~l~~~gV~i--~~~~~v~~i~~~~--~~~~v~~~~~~~g--~~~~-i~~D~vv~a~G--~~p~~~  274 (464)
T 2eq6_A          216 LRRALEKEGIRV--RTKTKAVGYEKKK--DGLHVRLEPAEGG--EGEE-VVVDKVLVAVG--RKPRTE  274 (464)
T ss_dssp             HHHHHHHTTCEE--ECSEEEEEEEEET--TEEEEEEEETTCC--SCEE-EEESEEEECSC--EEESCT
T ss_pred             HHHHHHhcCCEE--EcCCEEEEEEEeC--CEEEEEEeecCCC--ceeE-EEcCEEEECCC--cccCCC
Confidence            888888888655  9999999998754  4566776521101  1147 89999999999  455544

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.69  E-value=1.8e-07  Score=87.48  Aligned_cols=107  Identities=15%  Similarity=0.251  Sum_probs=80.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++|+.+.+...                                 ...++.++
T Consensus       183 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~---------------------------------~~~~~~~~  229 (478)
T 1v59_A          183 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS---------------------------------MDGEVAKA  229 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS---------------------------------SCHHHHHH
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccc---------------------------------cCHHHHHH
Confidence            468999999999999999999999999999999864311                                 11467888


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~  153 (325)
                      +.+.+++.++..  +++++|.+++.++..+.+.+.+.+...+  +..+ +.+|.||+|+|  ..|+.
T Consensus       230 l~~~l~~~gv~i--~~~~~v~~i~~~~~~~~~~v~~~~~~~g--~~~~-~~~D~vv~a~G--~~p~~  289 (478)
T 1v59_A          230 TQKFLKKQGLDF--KLSTKVISAKRNDDKNVVEIVVEDTKTN--KQEN-LEAEVLLVAVG--RRPYI  289 (478)
T ss_dssp             HHHHHHHTTCEE--ECSEEEEEEEEETTTTEEEEEEEETTTT--EEEE-EEESEEEECSC--EEECC
T ss_pred             HHHHHHHCCCEE--EeCCEEEEEEEecCCCeEEEEEEEcCCC--CceE-EECCEEEECCC--CCcCC
Confidence            888888888665  9999999998631224566776531111  1257 89999999999  44544

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=98.68  E-value=2.5e-08  Score=91.63  Aligned_cols=48  Identities=27%  Similarity=0.408  Sum_probs=41.2

Q ss_pred             CCCCCCCCeEEEECCChHHHHHHHHHHhcC-CCeEEEecCCCCCCccCCC
Q 020533            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQS-IPYVILERENCYASIWKKY   49 (325)
Q Consensus         1 M~~~~~~~~v~IIGaG~~Gl~~a~~L~~~g-~~v~v~e~~~~~Gg~w~~~   49 (325)
                      |+. ..++||+|||||++||++|..|++.| .+|+|+|+++++||.+...
T Consensus         1 M~~-~~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~t~   49 (424)
T 2b9w_A            1 MSI-SKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSP   49 (424)
T ss_dssp             -CC-CTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCCCC
T ss_pred             CCC-CCCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCccccc
Confidence            542 34579999999999999999999999 8999999999999976553

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=98.68  E-value=1.6e-08  Score=94.02  Aligned_cols=48  Identities=15%  Similarity=0.275  Sum_probs=41.6

Q ss_pred             CCCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC
Q 020533            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK   48 (325)
Q Consensus         1 M~~~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~   48 (325)
                      |+.+...+||+|||||++||++|..|++.|++|+|+|+++.+||.+..
T Consensus         5 ~~~~~~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   52 (453)
T 2bcg_G            5 QETIDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAAS   52 (453)
T ss_dssp             --CCCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred             hhhccccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCccccc
Confidence            344456689999999999999999999999999999999999997654

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=98.67  E-value=1.5e-08  Score=95.30  Aligned_cols=40  Identities=30%  Similarity=0.365  Sum_probs=31.7

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK   47 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~   47 (325)
                      ++|+|||||++||+||..|+++|++|+|+|+++.+||...
T Consensus         2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~GG~~~   41 (501)
T 4dgk_A            2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAY   41 (501)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC-------C
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCCCCcEE
Confidence            5899999999999999999999999999999999999544

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.66  E-value=1.9e-07  Score=86.72  Aligned_cols=103  Identities=16%  Similarity=0.146  Sum_probs=78.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|+.|+.+|..|.+.|.+|+++|+.+.+..                                 ....++.++
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------~~~~~~~~~  216 (455)
T 1ebd_A          170 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILS---------------------------------GFEKQMAAI  216 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST---------------------------------TSCHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc---------------------------------ccCHHHHHH
Confidence            46899999999999999999999999999999875420                                 012467788


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~  153 (325)
                      +.+.+++.++..  +++++|.+++.++  +...+++....    +..+ +.+|.||+|+|  ..|+.
T Consensus       217 l~~~l~~~gv~i--~~~~~v~~i~~~~--~~~~v~~~~~g----~~~~-~~~D~vv~a~G--~~p~~  272 (455)
T 1ebd_A          217 IKKRLKKKGVEV--VTNALAKGAEERE--DGVTVTYEANG----ETKT-IDADYVLVTVG--RRPNT  272 (455)
T ss_dssp             HHHHHHHTTCEE--EESEEEEEEEEET--TEEEEEEEETT----EEEE-EEESEEEECSC--EEESC
T ss_pred             HHHHHHHCCCEE--EeCCEEEEEEEeC--CeEEEEEEeCC----ceeE-EEcCEEEECcC--CCccc
Confidence            888888888655  9999999998754  44666654211    1167 89999999999  44543

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.66  E-value=4e-08  Score=91.02  Aligned_cols=34  Identities=29%  Similarity=0.453  Sum_probs=31.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcC-CCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQS-IPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g-~~v~v~e~~~   40 (325)
                      .+||+|||||++|+++|..|+++| .+|+|+|++.
T Consensus        23 ~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~~~   57 (448)
T 3axb_A           23 RFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGH   57 (448)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHCSCEEEEESSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCcEEEEccCC
Confidence            479999999999999999999999 9999999933

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=98.66  E-value=1.9e-08  Score=91.92  Aligned_cols=51  Identities=24%  Similarity=0.267  Sum_probs=43.2

Q ss_pred             CCCCCCCCeEEEECCChHHHHHHHHHHhc-CCCeEEEecCCCCCCccCCCCC
Q 020533            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQ-SIPYVILERENCYASIWKKYSY   51 (325)
Q Consensus         1 M~~~~~~~~v~IIGaG~~Gl~~a~~L~~~-g~~v~v~e~~~~~Gg~w~~~~y   51 (325)
                      |.++...+||+|||||++||++|..|++. |.+|+|+|+++.+||.+.....
T Consensus         1 m~~m~~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~~~~~   52 (399)
T 1v0j_A            1 MQPMTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSEAE   52 (399)
T ss_dssp             ---CCCSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCEEEC
T ss_pred             CCcccccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeeccc
Confidence            55555578999999999999999999999 9999999999999998876433

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.66  E-value=2.6e-07  Score=85.92  Aligned_cols=172  Identities=14%  Similarity=0.122  Sum_probs=89.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCCCCccCCCCCCceEee--cCC---CccCCCCC--------CCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLH--LAK---QFCQLPHL--------PFP   71 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~~~Gg~w~~~~y~~~~~~--~~~---~~~~~~~~--------~~~   71 (325)
                      .++|+|||+|.+|+.+|..|.+.  +.+|+++++.+.+-    ..........  .+.   .+..++..        ...
T Consensus       227 ~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~----p~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~  302 (463)
T 3s5w_A          227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALK----PADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHN  302 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCC----BCCCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGG
T ss_pred             CCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCc----CccCCccchhccChhHHHHHhcCCHHHHHHHHHHhhc
Confidence            56899999999999999999999  88999999987531    0000000000  000   00000000        000


Q ss_pred             CCCCCCCCHH---HHHHHH-HHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533           72 SSYPMFVSRA---QFIEHL-DHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        72 ~~~~~~~~~~---~~~~yl-~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                      ..+. -....   ++.+.+ .+.... ....+++++++|++++.++  +.|.|++.+..++  +..+ +.+|.||+|||.
T Consensus       303 ~~~~-~~~~~~~~~~~~~l~~~~~~~-~~~v~i~~~~~v~~v~~~~--~~~~v~~~~~~~g--~~~~-~~~D~Vv~AtG~  375 (463)
T 3s5w_A          303 TNYS-VVDTDLIERIYGVFYRQKVSG-IPRHAFRCMTTVERATATA--QGIELALRDAGSG--ELSV-ETYDAVILATGY  375 (463)
T ss_dssp             GTSS-CBCHHHHHHHHHHHHHHHHHC-CCCSEEETTEEEEEEEEET--TEEEEEEEETTTC--CEEE-EEESEEEECCCE
T ss_pred             cCCC-cCCHHHHHHHHHHHHHHHhcC-CCCeEEEeCCEEEEEEecC--CEEEEEEEEcCCC--CeEE-EECCEEEEeeCC
Confidence            0000 00000   111111 111111 1235569999999998765  6799998865333  3367 899999999995


Q ss_pred             CCCCCCCCCCCccccccCCCCCccEEecCCCCCCC-CCCCCeEEEECcC
Q 020533          148 TTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGK-PYGGKNVLVVGSG  195 (325)
Q Consensus       148 ~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~v~VvG~G  195 (325)
                      ...+..+.+.++...      .|.+.....+.-.. .....+|-++|..
T Consensus       376 ~p~~~~~~l~~l~~~------~g~i~v~~~~~~~~~~~~~~~Ifa~G~~  418 (463)
T 3s5w_A          376 ERQLHRQLLEPLAEY------LGDHEIGRDYRLQTDERCKVAIYAQGFS  418 (463)
T ss_dssp             ECCC-CTTTGGGGGG------BC--CCCTTSBCCBCTTBCSEEEESSCC
T ss_pred             CCCCccchhHHHHHH------hCCcccCcccccccCCCCCCeEEEcCCC
Confidence            333223444554433      25455544443221 1124568888863

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.66  E-value=6.8e-08  Score=89.52  Aligned_cols=102  Identities=21%  Similarity=0.288  Sum_probs=77.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      ..++++|||+|++|+.+|..|++.|.+|+++|+.+.+...                                ....++.+
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~--------------------------------~~~~~~~~  195 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGV--------------------------------YLDKEFTD  195 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT--------------------------------TCCHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccc--------------------------------cCCHHHHH
Confidence            4579999999999999999999999999999998754210                                01246788


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p  154 (325)
                      ++.+.+++.++.  ++++++|.+++.++  ..+.+.+.+        .+ +.+|.||+|+|  ..|+.+
T Consensus       196 ~l~~~l~~~gv~--i~~~~~v~~i~~~~--~v~~v~~~~--------~~-i~~d~vi~a~G--~~p~~~  249 (447)
T 1nhp_A          196 VLTEEMEANNIT--IATGETVERYEGDG--RVQKVVTDK--------NA-YDADLVVVAVG--VRPNTA  249 (447)
T ss_dssp             HHHHHHHTTTEE--EEESCCEEEEECSS--BCCEEEESS--------CE-EECSEEEECSC--EEESCG
T ss_pred             HHHHHHHhCCCE--EEcCCEEEEEEccC--cEEEEEECC--------CE-EECCEEEECcC--CCCChH
Confidence            888888888855  49999999987542  333455432        46 89999999999  445443

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.62  E-value=1.7e-07  Score=86.93  Aligned_cols=101  Identities=13%  Similarity=0.059  Sum_probs=78.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++|+.+.+..                               .  -..++.++
T Consensus       167 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~--~~~~~~~~  213 (450)
T 1ges_A          167 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP-------------------------------S--FDPMISET  213 (450)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-------------------------------T--SCHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhh-------------------------------h--hhHHHHHH
Confidence            46899999999999999999999999999999875320                               0  11357788


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~  153 (325)
                      +.+.+++.++..  +++++|.+++.++ ++.+.|++.++       .+ +.+|.||+|+|  ..|+.
T Consensus       214 l~~~l~~~Gv~i--~~~~~v~~i~~~~-~~~~~v~~~~g-------~~-i~~D~vv~a~G--~~p~~  267 (450)
T 1ges_A          214 LVEVMNAEGPQL--HTNAIPKAVVKNT-DGSLTLELEDG-------RS-ETVDCLIWAIG--REPAN  267 (450)
T ss_dssp             HHHHHHHHSCEE--ECSCCEEEEEECT-TSCEEEEETTS-------CE-EEESEEEECSC--EEESC
T ss_pred             HHHHHHHCCCEE--EeCCEEEEEEEeC-CcEEEEEECCC-------cE-EEcCEEEECCC--CCcCC
Confidence            888888888655  9999999998653 23467776553       46 89999999999  45554

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=98.61  E-value=4.4e-07  Score=87.83  Aligned_cols=35  Identities=17%  Similarity=0.376  Sum_probs=32.5

Q ss_pred             CCeEEEECCChHHHHHHHHHH---h-cCCCeEEEecCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLS---L-QSIPYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~---~-~g~~v~v~e~~~~   41 (325)
                      .+||+|||||++||++|..|+   + .|.+|+|+||.+.
T Consensus        22 ~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~   60 (643)
T 1jnr_A           22 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAV   60 (643)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCT
T ss_pred             cCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCC
Confidence            479999999999999999999   6 8999999999874

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.60  E-value=5.7e-07  Score=84.31  Aligned_cols=105  Identities=16%  Similarity=0.203  Sum_probs=81.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+..                                 ....++.+.
T Consensus       198 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------~~d~~~~~~  244 (491)
T 3urh_A          198 PASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILG---------------------------------GMDGEVAKQ  244 (491)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSS---------------------------------SSCHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeccccccc---------------------------------cCCHHHHHH
Confidence            46899999999999999999999999999999875421                                 012467788


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~  153 (325)
                      +.+.+++.++..  +++++|.+++.++  +...+.+.+..++  +..+ +.+|.||+|+|  ..|+.
T Consensus       245 l~~~l~~~gV~v--~~~~~v~~i~~~~--~~~~v~~~~~~~g--~~~~-i~~D~Vi~a~G--~~p~~  302 (491)
T 3urh_A          245 LQRMLTKQGIDF--KLGAKVTGAVKSG--DGAKVTFEPVKGG--EATT-LDAEVVLIATG--RKPST  302 (491)
T ss_dssp             HHHHHHHTTCEE--ECSEEEEEEEEET--TEEEEEEEETTSC--CCEE-EEESEEEECCC--CEECC
T ss_pred             HHHHHHhCCCEE--EECCeEEEEEEeC--CEEEEEEEecCCC--ceEE-EEcCEEEEeeC--CccCC
Confidence            888888888665  9999999998765  5667777653211  2257 89999999999  44544

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.60  E-value=2.1e-07  Score=86.59  Aligned_cols=100  Identities=17%  Similarity=0.098  Sum_probs=77.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|..|+.+|..|.+.|.+|+++++.+.+..                               .  -..++.++
T Consensus       166 ~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~-------------------------------~--~~~~~~~~  212 (463)
T 2r9z_A          166 PKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLF-------------------------------Q--FDPLLSAT  212 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-------------------------------T--SCHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCcccc-------------------------------c--cCHHHHHH
Confidence            46899999999999999999999999999999875320                               0  11356778


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeE-EEEEeCeEEEcccCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIE-EYYSGRFLVVASGETTNPFT  153 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~-~~~~ad~vIiAtG~~~~p~~  153 (325)
                      +.+.+++.++..  +++++|.+++.++  +.+.|++.++       . + +.+|.||+|+|  ..|+.
T Consensus       213 l~~~l~~~gv~i--~~~~~v~~i~~~~--~~~~v~~~~G-------~~~-i~~D~vv~a~G--~~p~~  266 (463)
T 2r9z_A          213 LAENMHAQGIET--HLEFAVAALERDA--QGTTLVAQDG-------TRL-EGFDSVIWAVG--RAPNT  266 (463)
T ss_dssp             HHHHHHHTTCEE--ESSCCEEEEEEET--TEEEEEETTC-------CEE-EEESEEEECSC--EEESC
T ss_pred             HHHHHHHCCCEE--EeCCEEEEEEEeC--CeEEEEEeCC-------cEE-EEcCEEEECCC--CCcCC
Confidence            888888888655  9999999998754  3466776543       3 7 89999999999  44554

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=98.60  E-value=9.2e-08  Score=89.92  Aligned_cols=53  Identities=28%  Similarity=0.345  Sum_probs=45.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLA   59 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~   59 (325)
                      .+||+|||||++||++|..|.+.|++|+|+|+++.+||.+.....++..++..
T Consensus        13 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~g   65 (504)
T 1sez_A           13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEG   65 (504)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEETTEEEESS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCeEEecC
Confidence            47999999999999999999999999999999999999877655555555443

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.59  E-value=1.6e-07  Score=87.31  Aligned_cols=101  Identities=15%  Similarity=0.147  Sum_probs=75.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|++|+.+|..|++.|.+|+++|+.+.+...                                 ...++.++
T Consensus       171 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~---------------------------------~~~~~~~~  217 (458)
T 1lvl_A          171 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT---------------------------------YDSELTAP  217 (458)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT---------------------------------SCHHHHHH
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCccccc---------------------------------cCHHHHHH
Confidence            468999999999999999999999999999998864210                                 12367778


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p  154 (325)
                      +.+.+++.++..  +++++|.+++. +  + ..++..++     +..+ +.+|.||+|+|  ..|+.+
T Consensus       218 l~~~l~~~gv~i--~~~~~v~~i~~-~--~-v~v~~~~G-----~~~~-i~~D~vv~a~G--~~p~~~  271 (458)
T 1lvl_A          218 VAESLKKLGIAL--HLGHSVEGYEN-G--C-LLANDGKG-----GQLR-LEADRVLVAVG--RRPRTK  271 (458)
T ss_dssp             HHHHHHHHTCEE--ETTCEEEEEET-T--E-EEEECSSS-----CCCE-ECCSCEEECCC--EEECCS
T ss_pred             HHHHHHHCCCEE--EECCEEEEEEe-C--C-EEEEECCC-----ceEE-EECCEEEECcC--CCcCCC
Confidence            888888888665  99999999875 2  2 44442122     1146 89999999999  455544

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.57  E-value=7.9e-07  Score=82.94  Aligned_cols=107  Identities=14%  Similarity=0.188  Sum_probs=79.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|+.|+.+|..|.+.|.+|+++|+.+.+...                                ....++.++
T Consensus       178 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~--------------------------------~~~~~~~~~  225 (474)
T 1zmd_A          178 PEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGV--------------------------------GIDMEISKN  225 (474)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCS--------------------------------SCCHHHHHH
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCc--------------------------------ccCHHHHHH
Confidence            468999999999999999999999999999998753210                                012467788


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~  153 (325)
                      +.+.+++.++..  +++++|.+++.++ ++.+.+++.+...+  +..+ +.+|.||+|+|  ..|+.
T Consensus       226 l~~~l~~~Gv~i--~~~~~v~~i~~~~-~~~~~v~~~~~~~~--~~~~-i~~D~vv~a~G--~~p~~  284 (474)
T 1zmd_A          226 FQRILQKQGFKF--KLNTKVTGATKKS-DGKIDVSIEAASGG--KAEV-ITCDVLLVCIG--RRPFT  284 (474)
T ss_dssp             HHHHHHHTTCEE--ECSEEEEEEEECT-TSCEEEEEEETTSC--CCEE-EEESEEEECSC--EEECC
T ss_pred             HHHHHHHCCCEE--EeCceEEEEEEcC-CceEEEEEEecCCC--CceE-EEcCEEEECcC--CCcCC
Confidence            888888888655  9999999998754 22266665421110  1167 89999999999  44543

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.55  E-value=5.1e-07  Score=84.13  Aligned_cols=101  Identities=11%  Similarity=0.143  Sum_probs=77.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+..                                 ....++.++
T Consensus       177 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~---------------------------------~~~~~~~~~  223 (470)
T 1dxl_A          177 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP---------------------------------TMDAEIRKQ  223 (470)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSST---------------------------------TSCHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc---------------------------------cccHHHHHH
Confidence            46899999999999999999999999999999875320                                 012467788


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                      +.+.+++.++..  +++++|.+++.++  +...+++.+...+  +..+ +.+|.||+|+|.
T Consensus       224 l~~~l~~~gv~i--~~~~~v~~i~~~~--~~~~v~~~~~~~g--~~~~-~~~D~vv~a~G~  277 (470)
T 1dxl_A          224 FQRSLEKQGMKF--KLKTKVVGVDTSG--DGVKLTVEPSAGG--EQTI-IEADVVLVSAGR  277 (470)
T ss_dssp             HHHHHHHSSCCE--ECSEEEEEEECSS--SSEEEEEEESSSC--CCEE-EEESEEECCCCE
T ss_pred             HHHHHHHcCCEE--EeCCEEEEEEEcC--CeEEEEEEecCCC--cceE-EECCEEEECCCC
Confidence            888888888765  9999999997654  4466666531111  1157 899999999994

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=98.54  E-value=9.8e-08  Score=89.35  Aligned_cols=50  Identities=16%  Similarity=0.311  Sum_probs=43.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcC-CCeEEEecCCCCCCccCC-CCCCceE
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQS-IPYVILERENCYASIWKK-YSYDRLR   55 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g-~~v~v~e~~~~~Gg~w~~-~~y~~~~   55 (325)
                      ..+||+|||||++||++|..|.+.| .+|+|+|+++.+||.|.. ..+.+..
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~~~~~~~~g~~   59 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRSFLDENGFT   59 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGGCEEECTTSCE
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCeeeeeecCCCcE
Confidence            4589999999999999999999998 799999999999998876 2344443

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.54  E-value=4.4e-07  Score=84.52  Aligned_cols=94  Identities=13%  Similarity=0.146  Sum_probs=76.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.                           +       ...++.+.
T Consensus       176 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l---------------------------~-------~~~~~~~~  221 (467)
T 1zk7_A          176 PERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFF---------------------------R-------EDPAIGEA  221 (467)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT---------------------------T-------SCHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccC---------------------------C-------CCHHHHHH
Confidence            4689999999999999999999999999999987531                           0       12467888


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                      +.+.+++.++..  +++++|.+++.++  +.+.|.+.+        .+ +.+|.||+|+|.
T Consensus       222 l~~~l~~~Gv~i--~~~~~v~~i~~~~--~~~~v~~~~--------~~-i~aD~Vv~a~G~  269 (467)
T 1zk7_A          222 VTAAFRAEGIEV--LEHTQASQVAHMD--GEFVLTTTH--------GE-LRADKLLVATGR  269 (467)
T ss_dssp             HHHHHHHTTCEE--ETTCCEEEEEEET--TEEEEEETT--------EE-EEESEEEECSCE
T ss_pred             HHHHHHhCCCEE--EcCCEEEEEEEeC--CEEEEEECC--------cE-EEcCEEEECCCC
Confidence            888888888655  9999999998754  556666542        57 899999999994

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.53  E-value=5.6e-07  Score=83.71  Aligned_cols=102  Identities=17%  Similarity=0.155  Sum_probs=78.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+..                                 ....++.++
T Consensus       171 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------~~~~~~~~~  217 (464)
T 2a8x_A          171 PKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALP---------------------------------NEDADVSKE  217 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST---------------------------------TSCHHHHHH
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCcccc---------------------------------ccCHHHHHH
Confidence            46899999999999999999999999999999875320                                 012367788


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEe-ecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKAS-NLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~-~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~  153 (325)
                      +.+..++.++..  +++++|.+++.++  +...+.+. ++     +..+ +.+|.||+|+|  ..|+.
T Consensus       218 l~~~l~~~gv~i--~~~~~v~~i~~~~--~~~~v~~~~~g-----~~~~-~~~D~vv~a~G--~~p~~  273 (464)
T 2a8x_A          218 IEKQFKKLGVTI--LTATKVESIADGG--SQVTVTVTKDG-----VAQE-LKAEKVLQAIG--FAPNV  273 (464)
T ss_dssp             HHHHHHHHTCEE--ECSCEEEEEEECS--SCEEEEEESSS-----CEEE-EEESEEEECSC--EEECC
T ss_pred             HHHHHHHcCCEE--EeCcEEEEEEEcC--CeEEEEEEcCC-----ceEE-EEcCEEEECCC--CCccC
Confidence            888888888655  9999999998654  34556654 22     2257 89999999999  44543

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=98.52  E-value=1e-07  Score=86.58  Aligned_cols=50  Identities=20%  Similarity=0.220  Sum_probs=43.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCC-CCceE
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYS-YDRLR   55 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~-y~~~~   55 (325)
                      ..+||+|||||++||++|..|++.|.+|+|+|+++.+||.|.... ..+..
T Consensus        28 ~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~G~~   78 (397)
T 3hdq_A           28 KGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYDCYDDAGVL   78 (397)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGCCEECTTSCE
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCccceeeccCCce
Confidence            357999999999999999999999999999999999999887542 34443

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.52  E-value=7.6e-07  Score=82.95  Aligned_cols=104  Identities=14%  Similarity=0.167  Sum_probs=78.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+...                                 ...++.++
T Consensus       174 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~---------------------------------~d~~~~~~  220 (468)
T 2qae_A          174 PKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPT---------------------------------LDEDVTNA  220 (468)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT---------------------------------SCHHHHHH
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCccccc---------------------------------CCHHHHHH
Confidence            468999999999999999999999999999998753210                                 12467788


Q ss_pred             HHHHH-HHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533           87 LDHYV-SHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (325)
Q Consensus        87 l~~~a-~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~  153 (325)
                      +.+.+ ++.++..  +++++|.+++.++  +.+.+.+...++   +..+ +.+|.||+|+|.  .|+.
T Consensus       221 l~~~l~~~~gv~i--~~~~~v~~i~~~~--~~~~v~~~~~~g---~~~~-i~~D~vv~a~G~--~p~~  278 (468)
T 2qae_A          221 LVGALAKNEKMKF--MTSTKVVGGTNNG--DSVSLEVEGKNG---KRET-VTCEALLVSVGR--RPFT  278 (468)
T ss_dssp             HHHHHHHHTCCEE--ECSCEEEEEEECS--SSEEEEEECC------EEE-EEESEEEECSCE--EECC
T ss_pred             HHHHHhhcCCcEE--EeCCEEEEEEEcC--CeEEEEEEcCCC---ceEE-EECCEEEECCCc--ccCC
Confidence            88888 8888655  9999999998754  446676652111   2256 899999999994  4443

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=98.52  E-value=4.9e-08  Score=92.18  Aligned_cols=42  Identities=26%  Similarity=0.415  Sum_probs=38.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcC-CCeEEEecCCCCCCccCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQS-IPYVILERENCYASIWKK   48 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g-~~v~v~e~~~~~Gg~w~~   48 (325)
                      .+||+|||||++||+||..|.+.| ++|+|+|+++++||.+..
T Consensus         8 ~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~~t   50 (516)
T 1rsg_A            8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQT   50 (516)
T ss_dssp             EEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTCCE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCceee
Confidence            479999999999999999999999 999999999999996543

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.52  E-value=1.2e-06  Score=82.16  Aligned_cols=104  Identities=15%  Similarity=0.124  Sum_probs=77.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+...                                 ...++.+.
T Consensus       174 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~---------------------------------~d~~~~~~  220 (492)
T 3ic9_A          174 PKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANL---------------------------------QDEEMKRY  220 (492)
T ss_dssp             CSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTC---------------------------------CCHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc---------------------------------CCHHHHHH
Confidence            468999999999999999999999999999998864210                                 12366777


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p  154 (325)
                      +.+..++.   ..++++++|.+++.++  +...+++.+.++   +..+ +.+|.||+|+|  ..|+..
T Consensus       221 l~~~l~~~---V~i~~~~~v~~i~~~~--~~v~v~~~~~~G---~~~~-i~~D~Vi~a~G--~~p~~~  277 (492)
T 3ic9_A          221 AEKTFNEE---FYFDAKARVISTIEKE--DAVEVIYFDKSG---QKTT-ESFQYVLAATG--RKANVD  277 (492)
T ss_dssp             HHHHHHTT---SEEETTCEEEEEEECS--SSEEEEEECTTC---CEEE-EEESEEEECSC--CEESCS
T ss_pred             HHHHHhhC---cEEEECCEEEEEEEcC--CEEEEEEEeCCC---ceEE-EECCEEEEeeC--CccCCC
Confidence            77777654   4458999999998754  456666653221   2257 89999999999  455443

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=98.51  E-value=1.7e-07  Score=88.58  Aligned_cols=42  Identities=29%  Similarity=0.385  Sum_probs=38.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK   48 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~   48 (325)
                      .+||+|||||++||++|..|++.|++|+|+|+++++||....
T Consensus         4 ~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t   45 (520)
T 1s3e_A            4 KCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYT   45 (520)
T ss_dssp             BCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCE
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCceee
Confidence            469999999999999999999999999999999999996543

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.51  E-value=8.1e-07  Score=81.42  Aligned_cols=98  Identities=17%  Similarity=0.204  Sum_probs=77.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+-.                                -....++.++
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~--------------------------------~~~~~~~~~~  199 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLA--------------------------------RVAGEALSEF  199 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT--------------------------------TTSCHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhh--------------------------------hhcCHHHHHH
Confidence            56899999999999999999999999999999875310                                0112478888


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                      +.+.+++.|+..  +++++|.+++.++ .....|++.++       .+ +.||.||+|+|.
T Consensus       200 l~~~l~~~GV~i--~~~~~v~~i~~~~-~~v~~v~l~dG-------~~-i~aD~Vv~a~G~  249 (415)
T 3lxd_A          200 YQAEHRAHGVDL--RTGAAMDCIEGDG-TKVTGVRMQDG-------SV-IPADIVIVGIGI  249 (415)
T ss_dssp             HHHHHHHTTCEE--EETCCEEEEEESS-SBEEEEEESSS-------CE-EECSEEEECSCC
T ss_pred             HHHHHHhCCCEE--EECCEEEEEEecC-CcEEEEEeCCC-------CE-EEcCEEEECCCC
Confidence            899899888665  9999999997653 12235666654       56 899999999994

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.50  E-value=7.5e-07  Score=84.24  Aligned_cols=101  Identities=12%  Similarity=-0.003  Sum_probs=79.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      .+.+++|||||+.|+.+|..+++.|.+|+|+++...+.                                  ...+++.+
T Consensus       222 lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L~----------------------------------~~D~ei~~  267 (542)
T 4b1b_A          222 DPGKTLVVGASYVALECSGFLNSLGYDVTVAVRSIVLR----------------------------------GFDQQCAV  267 (542)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSST----------------------------------TSCHHHHH
T ss_pred             CCceEEEECCCHHHHHHHHHHHhcCCeEEEeccccccc----------------------------------ccchhHHH
Confidence            34689999999999999999999999999998754321                                  01247888


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p  154 (325)
                      .+.+..++.++..  +.++.+.+++..+  +...|.+.+.       .. +.+|.|++|+|  ..|+..
T Consensus       268 ~l~~~l~~~gi~~--~~~~~v~~~~~~~--~~~~v~~~~~-------~~-~~~D~vLvAvG--R~Pnt~  322 (542)
T 4b1b_A          268 KVKLYMEEQGVMF--KNGILPKKLTKMD--DKILVEFSDK-------TS-ELYDTVLYAIG--RKGDID  322 (542)
T ss_dssp             HHHHHHHHTTCEE--EETCCEEEEEEET--TEEEEEETTS-------CE-EEESEEEECSC--EEESCG
T ss_pred             HHHHHHHhhccee--ecceEEEEEEecC--CeEEEEEcCC-------Ce-EEEEEEEEccc--ccCCcc
Confidence            8888899888655  9999999998765  5666666553       45 78999999999  556543

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.50  E-value=8.1e-07  Score=81.26  Aligned_cols=93  Identities=22%  Similarity=0.320  Sum_probs=74.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+...                                ....++.++
T Consensus       145 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~--------------------------------~~~~~~~~~  192 (408)
T 2gqw_A          145 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSR--------------------------------AAPATLADF  192 (408)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT--------------------------------TSCHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccc--------------------------------ccCHHHHHH
Confidence            478999999999999999999999999999998753210                                012367788


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                      +.+.+++.++..  +++++|.+++ +   +  .|++.++       .+ +.+|.||+|+|.
T Consensus       193 l~~~l~~~GV~i--~~~~~v~~i~-~---~--~v~~~~g-------~~-i~~D~vi~a~G~  237 (408)
T 2gqw_A          193 VARYHAAQGVDL--RFERSVTGSV-D---G--VVLLDDG-------TR-IAADMVVVGIGV  237 (408)
T ss_dssp             HHHHHHHTTCEE--EESCCEEEEE-T---T--EEEETTS-------CE-EECSEEEECSCE
T ss_pred             HHHHHHHcCcEE--EeCCEEEEEE-C---C--EEEECCC-------CE-EEcCEEEECcCC
Confidence            888888888665  9999999987 2   2  5666543       56 899999999994

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.50  E-value=3.5e-07  Score=85.50  Aligned_cols=96  Identities=18%  Similarity=0.252  Sum_probs=74.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      ...+|+|||+|++|+.+|..|.+.|.+|+++|+.+.+...                                 ...++.+
T Consensus       185 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~---------------------------------~~~~~~~  231 (480)
T 3cgb_A          185 KVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGTI---------------------------------YDGDMAE  231 (480)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTSS---------------------------------SCHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhhc---------------------------------CCHHHHH
Confidence            3578999999999999999999999999999998754210                                 1246778


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                      ++.+.+++.++..  +++++|.+++.++  +.+.+.+.+        .+ +.+|.||+|+|.
T Consensus       232 ~l~~~l~~~Gv~i--~~~~~v~~i~~~~--~v~~v~~~~--------~~-i~~D~vi~a~G~  280 (480)
T 3cgb_A          232 YIYKEADKHHIEI--LTNENVKAFKGNE--RVEAVETDK--------GT-YKADLVLVSVGV  280 (480)
T ss_dssp             HHHHHHHHTTCEE--ECSCCEEEEEESS--BEEEEEETT--------EE-EECSEEEECSCE
T ss_pred             HHHHHHHHcCcEE--EcCCEEEEEEcCC--cEEEEEECC--------CE-EEcCEEEECcCC
Confidence            8888888888655  8999999997642  333444432        56 899999999994

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.50  E-value=9.6e-07  Score=81.87  Aligned_cols=101  Identities=14%  Similarity=0.128  Sum_probs=77.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+++|||+|..|+.+|..|.+.|.+|+++++.+.+...                                .-..++.+.
T Consensus       147 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~--------------------------------~~d~~~~~~  194 (452)
T 3oc4_A          147 SQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPK--------------------------------YFDKEMVAE  194 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT--------------------------------TCCHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccccc--------------------------------cCCHHHHHH
Confidence            468999999999999999999999999999998753200                                012467788


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p  154 (325)
                      +.+.+++.++..  +++++|.+++..+  +.+.|.+.+        .+ +.+|.||+|+|  ..|+..
T Consensus       195 l~~~l~~~GV~i--~~~~~v~~i~~~~--~~v~v~~~~--------g~-i~aD~Vv~A~G--~~p~~~  247 (452)
T 3oc4_A          195 VQKSLEKQAVIF--HFEETVLGIEETA--NGIVLETSE--------QE-ISCDSGIFALN--LHPQLA  247 (452)
T ss_dssp             HHHHHHTTTEEE--EETCCEEEEEECS--SCEEEEESS--------CE-EEESEEEECSC--CBCCCS
T ss_pred             HHHHHHHcCCEE--EeCCEEEEEEccC--CeEEEEECC--------CE-EEeCEEEECcC--CCCChH
Confidence            888888888654  9999999998644  445566543        36 89999999999  445443

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.49  E-value=7.3e-07  Score=83.58  Aligned_cols=101  Identities=13%  Similarity=0.081  Sum_probs=78.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhc---CCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQ---SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF   83 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~---g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (325)
                      ..+++|||+|+.|+.+|..|.+.   |.+|+++++.+.+...                                 -..++
T Consensus       187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~---------------------------------~d~~~  233 (490)
T 1fec_A          187 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRG---------------------------------FDSEL  233 (490)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTT---------------------------------SCHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcccc---------------------------------cCHHH
Confidence            46899999999999999999999   9999999998853200                                 12367


Q ss_pred             HHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533           84 IEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (325)
Q Consensus        84 ~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~  153 (325)
                      .+++.+.+++.++..  +++++|.+++.++ ++.+.|++.++       .+ +.+|.||+|+|  ..|+.
T Consensus       234 ~~~l~~~l~~~GV~i--~~~~~v~~i~~~~-~~~~~v~~~~G-------~~-i~~D~vv~a~G--~~p~~  290 (490)
T 1fec_A          234 RKQLTEQLRANGINV--RTHENPAKVTKNA-DGTRHVVFESG-------AE-ADYDVVMLAIG--RVPRS  290 (490)
T ss_dssp             HHHHHHHHHHTTEEE--EETCCEEEEEECT-TSCEEEEETTS-------CE-EEESEEEECSC--EEESC
T ss_pred             HHHHHHHHHhCCCEE--EeCCEEEEEEEcC-CCEEEEEECCC-------cE-EEcCEEEEccC--CCcCc
Confidence            788888888888654  9999999998754 23467776543       46 89999999999  44544

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.49  E-value=1.3e-06  Score=82.06  Aligned_cols=102  Identities=16%  Similarity=0.087  Sum_probs=78.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+..                                 .-..++.++
T Consensus       176 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------~~d~~~~~~  222 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR---------------------------------KFDESVINV  222 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCT---------------------------------TSCHHHHHH
T ss_pred             CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCc---------------------------------ccchhhHHH
Confidence            46899999999999999999999999999999875320                                 012367788


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~  153 (325)
                      +.+..++.++..  +++++|.+++.++ ++.+.|++.++     + .. +.+|.||+|+|  ..|+.
T Consensus       223 l~~~l~~~gv~i--~~~~~v~~i~~~~-~~~~~v~~~~g-----~-~~-~~~D~vi~a~G--~~p~~  277 (500)
T 1onf_A          223 LENDMKKNNINI--VTFADVVEIKKVS-DKNLSIHLSDG-----R-IY-EHFDHVIYCVG--RSPDT  277 (500)
T ss_dssp             HHHHHHHTTCEE--ECSCCEEEEEESS-TTCEEEEETTS-----C-EE-EEESEEEECCC--BCCTT
T ss_pred             HHHHHHhCCCEE--EECCEEEEEEEcC-CceEEEEECCC-----c-EE-EECCEEEECCC--CCcCC
Confidence            888888888665  9999999998653 23466776543     2 35 78999999999  44554

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.49  E-value=3.1e-07  Score=85.93  Aligned_cols=103  Identities=13%  Similarity=0.058  Sum_probs=78.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++|+.+.+..                                 ....++.++
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~---------------------------------~~~~~~~~~  231 (482)
T 1ojt_A          185 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQ---------------------------------GADRDLVKV  231 (482)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSST---------------------------------TSCHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccc---------------------------------ccCHHHHHH
Confidence            46899999999999999999999999999999875320                                 012367788


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEee-cCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASN-LLSPGREIEEYYSGRFLVVASGETTNPFT  153 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~-~~~~~~~~~~~~~ad~vIiAtG~~~~p~~  153 (325)
                      +.+..++.++..  +++++|.+++.++  +...|++.+ ...+    .+ +.+|.||+|+|  ..|+.
T Consensus       232 l~~~l~~~gV~i--~~~~~v~~i~~~~--~~~~v~~~~~~~~g----~~-~~~D~vv~a~G--~~p~~  288 (482)
T 1ojt_A          232 WQKQNEYRFDNI--MVNTKTVAVEPKE--DGVYVTFEGANAPK----EP-QRYDAVLVAAG--RAPNG  288 (482)
T ss_dssp             HHHHHGGGEEEE--ECSCEEEEEEEET--TEEEEEEESSSCCS----SC-EEESCEEECCC--EEECG
T ss_pred             HHHHHHhcCCEE--EECCEEEEEEEcC--CeEEEEEeccCCCc----eE-EEcCEEEECcC--CCcCC
Confidence            888888887554  9999999998754  446676664 1111    45 78999999999  44543

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.48  E-value=1.1e-06  Score=81.95  Aligned_cols=103  Identities=17%  Similarity=0.166  Sum_probs=79.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+..                                 ....++.+.
T Consensus       180 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------~~~~~~~~~  226 (476)
T 3lad_A          180 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLP---------------------------------AVDEQVAKE  226 (476)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST---------------------------------TSCHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc---------------------------------ccCHHHHHH
Confidence            46899999999999999999999999999999875320                                 012467788


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~  153 (325)
                      +.+.+++.++..  +++++|.+++.++  +...+.+.++++    ..+ +.+|.||+|+|  ..|+.
T Consensus       227 l~~~l~~~Gv~v--~~~~~v~~i~~~~--~~~~v~~~~~~g----~~~-~~~D~vi~a~G--~~p~~  282 (476)
T 3lad_A          227 AQKILTKQGLKI--LLGARVTGTEVKN--KQVTVKFVDAEG----EKS-QAFDKLIVAVG--RRPVT  282 (476)
T ss_dssp             HHHHHHHTTEEE--EETCEEEEEEECS--SCEEEEEESSSE----EEE-EEESEEEECSC--EEECC
T ss_pred             HHHHHHhCCCEE--EECCEEEEEEEcC--CEEEEEEEeCCC----cEE-EECCEEEEeeC--CcccC
Confidence            888888888654  9999999998754  556677765321    156 89999999999  44543

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.48  E-value=1.1e-06  Score=81.06  Aligned_cols=99  Identities=13%  Similarity=0.175  Sum_probs=75.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+...                                ....++.++
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~--------------------------------~~~~~~~~~  196 (431)
T 1q1r_A          149 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLER--------------------------------VTAPPVSAF  196 (431)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTT--------------------------------TSCHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccc--------------------------------hhhHHHHHH
Confidence            468999999999999999999999999999998753100                                012367778


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEc-CCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYD-EATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~-~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                      +.+.+++.|+..  +++++|.+++.+ ++...+.|++.++       .+ +.+|.||+|+|.
T Consensus       197 l~~~l~~~GV~i--~~~~~v~~i~~~~~~~~v~~v~~~~G-------~~-i~~D~Vv~a~G~  248 (431)
T 1q1r_A          197 YEHLHREAGVDI--RTGTQVCGFEMSTDQQKVTAVLCEDG-------TR-LPADLVIAGIGL  248 (431)
T ss_dssp             HHHHHHHHTCEE--ECSCCEEEEEECTTTCCEEEEEETTS-------CE-EECSEEEECCCE
T ss_pred             HHHHHHhCCeEE--EeCCEEEEEEeccCCCcEEEEEeCCC-------CE-EEcCEEEECCCC
Confidence            888888888665  999999999762 1123335666543       56 899999999994

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.48  E-value=3.4e-07  Score=83.80  Aligned_cols=97  Identities=16%  Similarity=0.184  Sum_probs=76.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+...                                ....++.++
T Consensus       143 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~--------------------------------~~~~~~~~~  190 (410)
T 3ef6_A          143 ATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVR--------------------------------VLGRRIGAW  190 (410)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSHH--------------------------------HHCHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccchh--------------------------------hcCHHHHHH
Confidence            468999999999999999999999999999998753200                                011367788


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                      +.+.+++.++..  +++++|.+++.++  ....|++.++       .+ +.||.||+|+|.
T Consensus       191 l~~~l~~~GV~i--~~~~~v~~i~~~~--~~~~v~~~dg-------~~-i~aD~Vv~a~G~  239 (410)
T 3ef6_A          191 LRGLLTELGVQV--ELGTGVVGFSGEG--QLEQVMASDG-------RS-FVADSALICVGA  239 (410)
T ss_dssp             HHHHHHHHTCEE--ECSCCEEEEECSS--SCCEEEETTS-------CE-EECSEEEECSCE
T ss_pred             HHHHHHHCCCEE--EeCCEEEEEeccC--cEEEEEECCC-------CE-EEcCEEEEeeCC
Confidence            888888888665  8999999987643  4456777654       56 899999999994

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.48  E-value=9.3e-07  Score=83.53  Aligned_cols=97  Identities=13%  Similarity=0.105  Sum_probs=76.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHHH
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHL   87 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl   87 (325)
                      .+++|||+|..|+.+|..|.+.|.+|+++++.+.+..                               .  ...++.+++
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~-------------------------------~--~~~~~~~~l  261 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKL-------------------------------I--KDNETRAYV  261 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT-------------------------------C--CSHHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcccc-------------------------------c--ccHHHHHHH
Confidence            6899999999999999999999999999999875320                               0  124677888


Q ss_pred             HHHHHHcCCCceeeeCeEEEEEEEcCCCCc---EEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533           88 DHYVSHFNIGPSIRYQRSVESASYDEATNM---WNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        88 ~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~---~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                      .+.+++.|+..  +++++|.+++.++ ++.   +.|++.++     + .+ +.+|.||+|+|.
T Consensus       262 ~~~l~~~GV~i--~~~~~V~~i~~~~-~~~v~~~~v~~~~G-----~-~~-i~aD~Vv~A~G~  314 (523)
T 1mo9_A          262 LDRMKEQGMEI--ISGSNVTRIEEDA-NGRVQAVVAMTPNG-----E-MR-IETDFVFLGLGE  314 (523)
T ss_dssp             HHHHHHTTCEE--ESSCEEEEEEECT-TSBEEEEEEEETTE-----E-EE-EECSCEEECCCC
T ss_pred             HHHHHhCCcEE--EECCEEEEEEEcC-CCceEEEEEEECCC-----c-EE-EEcCEEEECcCC
Confidence            88888888655  9999999998653 232   56666542     1 27 999999999994

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.47  E-value=9.4e-07  Score=82.91  Aligned_cols=101  Identities=15%  Similarity=0.078  Sum_probs=78.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhc---CCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQ---SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF   83 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~---g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (325)
                      ..+++|||+|..|+.+|..|.+.   |.+|+++++.+.+..                               .  -..++
T Consensus       191 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~-------------------------------~--~d~~~  237 (495)
T 2wpf_A          191 PRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILR-------------------------------G--FDETI  237 (495)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCT-------------------------------T--SCHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCcccc-------------------------------c--cCHHH
Confidence            46899999999999999999999   999999999875320                               0  12367


Q ss_pred             HHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533           84 IEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (325)
Q Consensus        84 ~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~  153 (325)
                      .+++.+.+++.++..  +++++|.+++.++ ++...|++.++       .+ +.+|.||+|+|  ..|+.
T Consensus       238 ~~~l~~~l~~~GV~i--~~~~~v~~i~~~~-~~~~~v~~~~G-------~~-i~~D~vv~a~G--~~p~~  294 (495)
T 2wpf_A          238 REEVTKQLTANGIEI--MTNENPAKVSLNT-DGSKHVTFESG-------KT-LDVDVVMMAIG--RIPRT  294 (495)
T ss_dssp             HHHHHHHHHHTTCEE--EESCCEEEEEECT-TSCEEEEETTS-------CE-EEESEEEECSC--EEECC
T ss_pred             HHHHHHHHHhCCCEE--EeCCEEEEEEEcC-CceEEEEECCC-------cE-EEcCEEEECCC--Ccccc
Confidence            788888888888655  9999999998653 23466776543       46 89999999999  44543

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.47  E-value=1.7e-06  Score=80.74  Aligned_cols=107  Identities=13%  Similarity=0.000  Sum_probs=79.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|..|+.+|..|.+.|.+|+++++.+.+..                                 ....++.++
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------~~d~~~~~~  233 (478)
T 3dk9_A          187 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLR---------------------------------SFDSMISTN  233 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT---------------------------------TSCHHHHHH
T ss_pred             CccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCcccc---------------------------------ccCHHHHHH
Confidence            46899999999999999999999999999999875320                                 012367788


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCcee--EEEEEeCeEEEcccCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREI--EEYYSGRFLVVASGETTNPFT  153 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~--~~~~~ad~vIiAtG~~~~p~~  153 (325)
                      +.+.+++.++..  +++++|.+++..++.....+.+.+...+  +.  .+ +.+|.||+|+|  ..|+.
T Consensus       234 ~~~~l~~~gv~i--~~~~~v~~i~~~~~~~~~~v~~~~~~~g--~~~g~~-~~~D~vi~a~G--~~p~~  295 (478)
T 3dk9_A          234 CTEELENAGVEV--LKFSQVKEVKKTLSGLEVSMVTAVPGRL--PVMTMI-PDVDCLLWAIG--RVPNT  295 (478)
T ss_dssp             HHHHHHHTTCEE--ETTEEEEEEEECSSSEEEEEEECCTTSC--CEEEEE-EEESEEEECSC--EEESC
T ss_pred             HHHHHHHCCCEE--EeCCEEEEEEEcCCCcEEEEEEccCCCC--cccceE-EEcCEEEEeec--cccCC
Confidence            888888888665  9999999998654211355666543221  11  56 89999999999  44544

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.46  E-value=9.1e-07  Score=83.09  Aligned_cols=97  Identities=12%  Similarity=0.138  Sum_probs=76.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+..                               .  ...++.+.
T Consensus       182 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~--~d~~~~~~  228 (499)
T 1xdi_A          182 PDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLP-------------------------------Y--EDADAALV  228 (499)
T ss_dssp             CSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSC-------------------------------C--SSHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc-------------------------------c--cCHHHHHH
Confidence            46899999999999999999999999999999875320                               0  12367788


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET  148 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~  148 (325)
                      +.+.+++.|+..  +++++|.+++.++  +.+.|+..++       .+ +.+|.||+|+|..
T Consensus       229 l~~~l~~~GV~i--~~~~~V~~i~~~~--~~v~v~~~~g-------~~-i~aD~Vv~a~G~~  278 (499)
T 1xdi_A          229 LEESFAERGVRL--FKNARAASVTRTG--AGVLVTMTDG-------RT-VEGSHALMTIGSV  278 (499)
T ss_dssp             HHHHHHHTTCEE--ETTCCEEEEEECS--SSEEEEETTS-------CE-EEESEEEECCCEE
T ss_pred             HHHHHHHCCCEE--EeCCEEEEEEEeC--CEEEEEECCC-------cE-EEcCEEEECCCCC
Confidence            888888888665  9999999998654  4455654332       56 8999999999943

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.46  E-value=1e-06  Score=82.37  Aligned_cols=103  Identities=12%  Similarity=0.066  Sum_probs=77.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+..                               .  ..+++.+.
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~--~d~~~~~~  231 (479)
T 2hqm_A          185 PKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLR-------------------------------K--FDECIQNT  231 (479)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCT-------------------------------T--SCHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCcccc-------------------------------c--cCHHHHHH
Confidence            46899999999999999999999999999999875320                               0  12367778


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~  153 (325)
                      +.+.+++.|+..  +++++|.+++.+++.....|++.++     + .+ +.+|.||+|+|  ..|+.
T Consensus       232 l~~~l~~~Gv~i--~~~~~v~~i~~~~~~~~~~v~~~~G-----~-~~-i~~D~vv~a~G--~~p~~  287 (479)
T 2hqm_A          232 ITDHYVKEGINV--HKLSKIVKVEKNVETDKLKIHMNDS-----K-SI-DDVDELIWTIG--RKSHL  287 (479)
T ss_dssp             HHHHHHHHTCEE--ECSCCEEEEEECC-CCCEEEEETTS-----C-EE-EEESEEEECSC--EEECC
T ss_pred             HHHHHHhCCeEE--EeCCEEEEEEEcCCCcEEEEEECCC-----c-EE-EEcCEEEECCC--CCCcc
Confidence            888888888655  9999999997654221356666543     1 46 89999999999  44543

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.46  E-value=4.5e-06  Score=78.01  Aligned_cols=101  Identities=20%  Similarity=0.083  Sum_probs=78.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++++...+.                                  ....++.++
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~l~----------------------------------~~d~~~~~~  232 (483)
T 3dgh_A          187 PGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIVLR----------------------------------GFDQQMAEL  232 (483)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCSST----------------------------------TSCHHHHHH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCc----------------------------------ccCHHHHHH
Confidence            4689999999999999999999999999998853210                                  012367788


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                      +.+.+++.++..  +++++|.+++..+ ++...|++.++..+  +..+ +.+|.||+|+|.
T Consensus       233 l~~~l~~~Gv~i--~~~~~v~~i~~~~-~~~~~v~~~~~~~~--~~~~-~~~D~vi~a~G~  287 (483)
T 3dgh_A          233 VAASMEERGIPF--LRKTVPLSVEKQD-DGKLLVKYKNVETG--EESE-DVYDTVLWAIGR  287 (483)
T ss_dssp             HHHHHHHTTCCE--EETEEEEEEEECT-TSCEEEEEEETTTC--CEEE-EEESEEEECSCE
T ss_pred             HHHHHHhCCCEE--EeCCEEEEEEEcC-CCcEEEEEecCCCC--ceeE-EEcCEEEECccc
Confidence            888888888766  9999999998754 24466777765432  2357 899999999993

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.45  E-value=9.6e-07  Score=80.64  Aligned_cols=98  Identities=18%  Similarity=0.169  Sum_probs=76.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+...                                ....++.++
T Consensus       142 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~--------------------------------~~~~~~~~~  189 (404)
T 3fg2_P          142 KKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMAR--------------------------------VVTPEISSY  189 (404)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTT--------------------------------TSCHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhh--------------------------------ccCHHHHHH
Confidence            468999999999999999999999999999998753200                                012467888


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                      +.+.+++.++..  +++++|.+++.++ .....|++.++       .+ +.||.||+|+|.
T Consensus       190 l~~~l~~~GV~i--~~~~~v~~i~~~~-~~v~~V~~~dG-------~~-i~aD~Vv~a~G~  239 (404)
T 3fg2_P          190 FHDRHSGAGIRM--HYGVRATEIAAEG-DRVTGVVLSDG-------NT-LPCDLVVVGVGV  239 (404)
T ss_dssp             HHHHHHHTTCEE--ECSCCEEEEEEET-TEEEEEEETTS-------CE-EECSEEEECCCE
T ss_pred             HHHHHHhCCcEE--EECCEEEEEEecC-CcEEEEEeCCC-------CE-EEcCEEEECcCC
Confidence            888888888665  9999999997653 12234666554       56 899999999994

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.45  E-value=3.5e-06  Score=78.83  Aligned_cols=105  Identities=15%  Similarity=0.002  Sum_probs=79.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++++...+.                                  .-..++.++
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l~----------------------------------~~d~~~~~~  230 (488)
T 3dgz_A          185 PGKTLVVGASYVALECAGFLTGIGLDTTVMMRSIPLR----------------------------------GFDQQMSSL  230 (488)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSST----------------------------------TSCHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCcccc----------------------------------cCCHHHHHH
Confidence            4579999999999999999999999999999864210                                  012467788


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~  153 (325)
                      +.+..++.++..  ++++++.+++..+ ++...+++.+..++  +..+ +.+|.||+|+|  ..|+.
T Consensus       231 l~~~l~~~gv~~--~~~~~v~~i~~~~-~~~~~v~~~~~~~g--~~~~-~~~D~vi~a~G--~~p~~  289 (488)
T 3dgz_A          231 VTEHMESHGTQF--LKGCVPSHIKKLP-TNQLQVTWEDHASG--KEDT-GTFDTVLWAIG--RVPET  289 (488)
T ss_dssp             HHHHHHHTTCEE--EETEEEEEEEECT-TSCEEEEEEETTTT--EEEE-EEESEEEECSC--EEESC
T ss_pred             HHHHHHHCCCEE--EeCCEEEEEEEcC-CCcEEEEEEeCCCC--eeEE-EECCEEEEccc--CCccc
Confidence            888888888665  9999999997643 35566777664332  3346 78999999999  44543

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=98.45  E-value=1.3e-07  Score=87.68  Aligned_cols=41  Identities=29%  Similarity=0.383  Sum_probs=38.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK   47 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~   47 (325)
                      ++||+|||||++||++|..|++.|++|+|+|+++.+||.+.
T Consensus         5 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~   45 (453)
T 2yg5_A            5 QRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTW   45 (453)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCcee
Confidence            47999999999999999999999999999999999998764

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=98.44  E-value=1.6e-07  Score=87.60  Aligned_cols=43  Identities=33%  Similarity=0.418  Sum_probs=38.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK   48 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~   48 (325)
                      ..+||+|||||++||++|..|++.|++|+|+|+++.+||....
T Consensus        15 ~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~~t   57 (478)
T 2ivd_A           15 TGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGT   57 (478)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeee
Confidence            3579999999999999999999999999999999999985443

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=98.44  E-value=1.9e-07  Score=87.38  Aligned_cols=42  Identities=21%  Similarity=0.277  Sum_probs=38.8

Q ss_pred             CCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCcc
Q 020533            5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW   46 (325)
Q Consensus         5 ~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w   46 (325)
                      +..+||+|||||++||++|..|.+.|++|+|+|+++.+||.+
T Consensus         9 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~   50 (489)
T 2jae_A            9 KGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRV   50 (489)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTC
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCCce
Confidence            346799999999999999999999999999999999999954

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.43  E-value=1.5e-06  Score=80.93  Aligned_cols=97  Identities=14%  Similarity=0.168  Sum_probs=77.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhc-CCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQ-SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~-g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      ..+++|||+|++|+.+|..|.+. |.+|+++++.+.+...                                ....++.+
T Consensus       159 ~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~--------------------------------~~~~~~~~  206 (472)
T 3iwa_A          159 VSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPG--------------------------------FTSKSLSQ  206 (472)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTT--------------------------------TSCHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCccccc--------------------------------ccCHHHHH
Confidence            46899999999999999999999 9999999998753200                                01246788


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                      .+.+.+++.++..  +++++|.+++.++  +...+.+.++       .+ +.+|.||+|+|.
T Consensus       207 ~l~~~l~~~GV~i--~~~~~v~~i~~~~--~~v~v~~~~g-------~~-i~aD~Vv~a~G~  256 (472)
T 3iwa_A          207 MLRHDLEKNDVVV--HTGEKVVRLEGEN--GKVARVITDK-------RT-LDADLVILAAGV  256 (472)
T ss_dssp             HHHHHHHHTTCEE--ECSCCEEEEEESS--SBEEEEEESS-------CE-EECSEEEECSCE
T ss_pred             HHHHHHHhcCCEE--EeCCEEEEEEccC--CeEEEEEeCC-------CE-EEcCEEEECCCC
Confidence            8888888888665  9999999998743  5566776654       46 899999999994

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.43  E-value=1.1e-06  Score=81.55  Aligned_cols=100  Identities=13%  Similarity=0.116  Sum_probs=75.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+++|||+|..|+.+|..|.+.|.+|+++++.+.+...                                ....++.++
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~--------------------------------~~~~~~~~~  196 (452)
T 2cdu_A          149 AKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYK--------------------------------YFDKEFTDI  196 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTT--------------------------------TSCHHHHHH
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhh--------------------------------hhhhhHHHH
Confidence            468999999999999999999999999999998753210                                012467788


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEE-EEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWN-VKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~-v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~  153 (325)
                      +.+.+++.|+..  +++++|.+++.++  +... +.. ++       .+ +.+|.||+|+|  ..|+.
T Consensus       197 l~~~l~~~Gv~i--~~~~~v~~i~~~~--~~v~~v~~-~g-------~~-i~~D~vv~a~G--~~p~~  249 (452)
T 2cdu_A          197 LAKDYEAHGVNL--VLGSKVAAFEEVD--DEIITKTL-DG-------KE-IKSDIAILCIG--FRPNT  249 (452)
T ss_dssp             HHHHHHHTTCEE--EESSCEEEEEEET--TEEEEEET-TS-------CE-EEESEEEECCC--EEECC
T ss_pred             HHHHHHHCCCEE--EcCCeeEEEEcCC--CeEEEEEe-CC-------CE-EECCEEEECcC--CCCCH
Confidence            888888888665  9999999998633  4333 332 21       56 89999999999  44443

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=98.42  E-value=9.8e-07  Score=82.70  Aligned_cols=101  Identities=16%  Similarity=0.233  Sum_probs=75.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      ...+|+|||+|+.|+.+|..|++.|.+|+++++.+.+...                                ....++.+
T Consensus       193 ~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~--------------------------------~~~~~~~~  240 (490)
T 2bc0_A          193 DIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAG--------------------------------YYDRDLTD  240 (490)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT--------------------------------TSCHHHHH
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchhhh--------------------------------HHHHHHHH
Confidence            3578999999999999999999999999999998753210                                01246778


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~  153 (325)
                      ++.+.+++.++..  +++++|++++.++  ....+.+ ++       .+ +.+|.||+|+|  ..|+.
T Consensus       241 ~l~~~l~~~GV~i--~~~~~v~~i~~~~--~v~~v~~-~g-------~~-i~~D~Vi~a~G--~~p~~  293 (490)
T 2bc0_A          241 LMAKNMEEHGIQL--AFGETVKEVAGNG--KVEKIIT-DK-------NE-YDVDMVILAVG--FRPNT  293 (490)
T ss_dssp             HHHHHHHTTTCEE--EETCCEEEEECSS--SCCEEEE-SS-------CE-EECSEEEECCC--EEECC
T ss_pred             HHHHHHHhCCeEE--EeCCEEEEEEcCC--cEEEEEE-CC-------cE-EECCEEEECCC--CCcCh
Confidence            8888888888655  9999999987521  2223444 22       46 89999999999  44543

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.41  E-value=1.1e-06  Score=82.23  Aligned_cols=96  Identities=19%  Similarity=0.240  Sum_probs=77.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+..                               .  ...++.+.
T Consensus       191 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~--~~~~~~~~  237 (484)
T 3o0h_A          191 PKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILR-------------------------------N--FDYDLRQL  237 (484)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-------------------------------T--SCHHHHHH
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCcccc-------------------------------c--cCHHHHHH
Confidence            46899999999999999999999999999999875320                               0  11367788


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                      +.+.+++.++..  +++++|.+++.++  +.+.|++.++       .+ +.+|.||+|+|.
T Consensus       238 l~~~l~~~Gv~i--~~~~~V~~i~~~~--~~v~v~~~~g-------~~-i~aD~Vi~A~G~  286 (484)
T 3o0h_A          238 LNDAMVAKGISI--IYEATVSQVQSTE--NCYNVVLTNG-------QT-ICADRVMLATGR  286 (484)
T ss_dssp             HHHHHHHHTCEE--ESSCCEEEEEECS--SSEEEEETTS-------CE-EEESEEEECCCE
T ss_pred             HHHHHHHCCCEE--EeCCEEEEEEeeC--CEEEEEECCC-------cE-EEcCEEEEeeCC
Confidence            888888888665  9999999998754  5577777654       46 899999999994

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.41  E-value=2.6e-06  Score=74.85  Aligned_cols=100  Identities=22%  Similarity=0.281  Sum_probs=73.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|++|+.+|..|.+.|.+|+++++.+.+.                                   ....+.+.
T Consensus       145 ~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-----------------------------------~~~~~~~~  189 (320)
T 1trb_A          145 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR-----------------------------------AEKILIKR  189 (320)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC-----------------------------------CCHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCccc-----------------------------------cCHHHHHH
Confidence            4689999999999999999999999999999886421                                   11355666


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCC-CCceeEEEEEeCeEEEcccC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLS-PGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~-~~~~~~~~~~ad~vIiAtG~  147 (325)
                      +.+.+++.++.  ++++++|.+++.++ .....|++.+... +  +..+ +.+|.||+|+|.
T Consensus       190 l~~~l~~~gv~--i~~~~~v~~i~~~~-~~v~~v~~~~~~~~g--~~~~-i~~D~vv~a~G~  245 (320)
T 1trb_A          190 LMDKVENGNII--LHTNRTLEEVTGDQ-MGVTGVRLRDTQNSD--NIES-LDVAGLFVAIGH  245 (320)
T ss_dssp             HHHHHHTSSEE--EECSCEEEEEEECS-SSEEEEEEECCTTCC--CCEE-EECSEEEECSCE
T ss_pred             HHHhcccCCeE--EEcCceeEEEEcCC-CceEEEEEEeccCCC--ceEE-EEcCEEEEEeCC
Confidence            77777777755  49999999998653 2333466654211 1  2267 899999999994

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=98.40  E-value=2.4e-07  Score=86.89  Aligned_cols=40  Identities=23%  Similarity=0.349  Sum_probs=37.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK   47 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~   47 (325)
                      +||+|||||++||++|..|.+.|++|+|+|+++++||...
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~~   79 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSW   79 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcce
Confidence            7999999999999999999999999999999999998543

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.39  E-value=2.2e-06  Score=81.72  Aligned_cols=98  Identities=18%  Similarity=0.203  Sum_probs=75.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|..|+.+|..|.+.|.+|+++++.+.+..                                 ....++.++
T Consensus       151 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------~~~~~~~~~  197 (565)
T 3ntd_A          151 VEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMT---------------------------------PVDREMAGF  197 (565)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCT---------------------------------TSCHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccch---------------------------------hcCHHHHHH
Confidence            45899999999999999999999999999999875320                                 012467788


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcC-----------------CCCcEEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDE-----------------ATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~-----------------~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                      +.+.+++.++..  +++++|.+++.+.                 ..+...+...++       .+ +.+|.||+|+|.
T Consensus       198 l~~~l~~~GV~i--~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-------~~-i~~D~vi~a~G~  265 (565)
T 3ntd_A          198 AHQAIRDQGVDL--RLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNG-------EL-LETDLLIMAIGV  265 (565)
T ss_dssp             HHHHHHHTTCEE--EETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTS-------CE-EEESEEEECSCE
T ss_pred             HHHHHHHCCCEE--EeCCeEEEEeccccccccccccccccccccCCCcEEEEEcCC-------CE-EEcCEEEECcCC
Confidence            888888888665  9999999997631                 134555665433       46 899999999994

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.37  E-value=4e-06  Score=74.19  Aligned_cols=99  Identities=14%  Similarity=0.100  Sum_probs=73.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|.+|+.+|..|.+.|.+|+++++.+.+.                                   ...+..+.
T Consensus       152 ~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~-----------------------------------~~~~~~~~  196 (335)
T 2zbw_A          152 GKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFR-----------------------------------AHEASVKE  196 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCC-----------------------------------SCHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccC-----------------------------------ccHHHHHH
Confidence            4689999999999999999999999999999887421                                   11245566


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                      +.+.+++.++..  +++++|.+++.++  +...|++.....+  +..+ +.+|.||+|+|.
T Consensus       197 l~~~l~~~gv~v--~~~~~v~~i~~~~--~~~~v~~~~~~~g--~~~~-i~~D~vi~a~G~  250 (335)
T 2zbw_A          197 LMKAHEEGRLEV--LTPYELRRVEGDE--RVRWAVVFHNQTQ--EELA-LEVDAVLILAGY  250 (335)
T ss_dssp             HHHHHHTTSSEE--ETTEEEEEEEESS--SEEEEEEEETTTC--CEEE-EECSEEEECCCE
T ss_pred             HHhccccCCeEE--ecCCcceeEccCC--CeeEEEEEECCCC--ceEE-EecCEEEEeecC
Confidence            777777777654  9999999998732  3335666532111  2257 899999999994

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=98.36  E-value=2.8e-07  Score=83.17  Aligned_cols=49  Identities=18%  Similarity=0.253  Sum_probs=42.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEe
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRL   56 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~   56 (325)
                      +||+|||||++|+++|..|++.|.+|+|+|+++.+||.+......+..+
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~   50 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGIQI   50 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEEETTEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcceEeeccCCcee
Confidence            6899999999999999999999999999999999999876543344433

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=98.35  E-value=3.5e-07  Score=85.82  Aligned_cols=43  Identities=26%  Similarity=0.318  Sum_probs=39.3

Q ss_pred             CCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccC
Q 020533            5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK   47 (325)
Q Consensus         5 ~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~   47 (325)
                      ...+||+|||||++||++|..|.+.|.+|+|+|+++++||.+.
T Consensus        31 ~~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~   73 (498)
T 2iid_A           31 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVR   73 (498)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcee
Confidence            3467999999999999999999999999999999999999653

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.35  E-value=1.2e-06  Score=80.93  Aligned_cols=95  Identities=15%  Similarity=0.176  Sum_probs=73.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++|+.+.+...                                 ...++.+.
T Consensus       147 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~---------------------------------~d~~~~~~  193 (437)
T 4eqs_A          147 VDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKL---------------------------------MDADMNQP  193 (437)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTT---------------------------------SCGGGGHH
T ss_pred             CcEEEEECCccchhhhHHHHHhcCCcceeeeeecccccc---------------------------------ccchhHHH
Confidence            458999999999999999999999999999998864211                                 01245577


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF  152 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~  152 (325)
                      +.+..++.++..  +++++|.+++..      .+.++++       .+ +.+|.|++|+|  ..|+
T Consensus       194 ~~~~l~~~gV~i--~~~~~v~~~~~~------~v~~~~g-------~~-~~~D~vl~a~G--~~Pn  241 (437)
T 4eqs_A          194 ILDELDKREIPY--RLNEEINAINGN------EITFKSG-------KV-EHYDMIIEGVG--THPN  241 (437)
T ss_dssp             HHHHHHHTTCCE--EESCCEEEEETT------EEEETTS-------CE-EECSEEEECCC--EEES
T ss_pred             HHHHhhccceEE--EeccEEEEecCC------eeeecCC-------eE-EeeeeEEEEec--eecC
Confidence            788888888766  999999887532      2666554       56 89999999999  4454

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.35  E-value=7.6e-06  Score=77.18  Aligned_cols=106  Identities=19%  Similarity=0.087  Sum_probs=76.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+++|||+|+.|+.+|..|++.|.+|+++++...+.                                .  ...++.++
T Consensus       210 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~l~--------------------------------~--~d~~~~~~  255 (519)
T 3qfa_A          210 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLR--------------------------------G--FDQDMANK  255 (519)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSST--------------------------------T--SCHHHHHH
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecccccc--------------------------------c--CCHHHHHH
Confidence            3579999999999999999999999999999853110                                0  12467888


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCC--CCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEA--TNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~  153 (325)
                      +.+..++.++..  ++++++.+++..+.  .+...++....+++  +..+ +.+|.||+|+|  ..|+.
T Consensus       256 ~~~~l~~~GV~v--~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~--~~~~-~~~D~vi~a~G--~~p~~  317 (519)
T 3qfa_A          256 IGEHMEEHGIKF--IRQFVPIKVEQIEAGTPGRLRVVAQSTNSE--EIIE-GEYNTVMLAIG--RDACT  317 (519)
T ss_dssp             HHHHHHHTTCEE--EESEEEEEEEEEECCTTCEEEEEEEESSSS--CEEE-EEESEEEECSC--EEESC
T ss_pred             HHHHHHHCCCEE--EeCCeEEEEEEccCCCCceEEEEEEECCCc--EEEE-EECCEEEEecC--CcccC
Confidence            888888888665  89988888865432  24455655443322  2246 78999999999  44543

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=98.35  E-value=3.9e-07  Score=82.72  Aligned_cols=44  Identities=18%  Similarity=0.211  Sum_probs=40.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSY   51 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y   51 (325)
                      +||+|||||++|+++|..|.+.|.+|+|+|+++.+||.|....+
T Consensus         4 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~   47 (384)
T 2bi7_A            4 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARD   47 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEEEC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCCccccccc
Confidence            69999999999999999999999999999999999999876433

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=98.32  E-value=3.9e-07  Score=84.93  Aligned_cols=41  Identities=22%  Similarity=0.297  Sum_probs=37.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcC--CCeEEEecCCCCCCccC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYASIWK   47 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g--~~v~v~e~~~~~Gg~w~   47 (325)
                      ++||+|||||++||++|..|.+.|  .+|+|+|+++.+||.+.
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~~   46 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVA   46 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTCC
T ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCceeE
Confidence            479999999999999999999999  99999999999998544

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=98.31  E-value=4.6e-07  Score=84.48  Aligned_cols=49  Identities=35%  Similarity=0.494  Sum_probs=41.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCCCCCCccCCCCCCce
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSI-PYVILERENCYASIWKKYSYDRL   54 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~~~Gg~w~~~~y~~~   54 (325)
                      ..+||+|||||++||++|..|.+.|+ +|+|+|+++.+||.|....+.+.
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~~~~~~~~~   52 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGI   52 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEEETTE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCceeecccCCc
Confidence            35799999999999999999999999 89999999999998776444433

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.31  E-value=2.8e-06  Score=79.67  Aligned_cols=97  Identities=14%  Similarity=0.089  Sum_probs=73.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHh----cCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSL----QSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQ   82 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~----~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (325)
                      ..+|+|||+|+.|+.+|..|.+    .|.+|+++++.+.+.+                              ..+  ..+
T Consensus       180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~------------------------------~~l--~~~  227 (493)
T 1m6i_A          180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMG------------------------------KIL--PEY  227 (493)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTT------------------------------TTS--CHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCccccc------------------------------ccC--CHH
Confidence            4689999999999999999987    4789999988764210                              001  146


Q ss_pred             HHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533           83 FIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        83 ~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                      +.+++.+.+++.++..  +++++|.+++.++  +...|++.++       .+ +.+|.||+|+|.
T Consensus       228 ~~~~~~~~l~~~GV~v--~~~~~V~~i~~~~--~~~~v~l~dG-------~~-i~aD~Vv~a~G~  280 (493)
T 1m6i_A          228 LSNWTMEKVRREGVKV--MPNAIVQSVGVSS--GKLLIKLKDG-------RK-VETDHIVAAVGL  280 (493)
T ss_dssp             HHHHHHHHHHTTTCEE--ECSCCEEEEEEET--TEEEEEETTS-------CE-EEESEEEECCCE
T ss_pred             HHHHHHHHHHhcCCEE--EeCCEEEEEEecC--CeEEEEECCC-------CE-EECCEEEECCCC
Confidence            7778888888888655  9999999997653  4456666543       56 899999999994

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.31  E-value=1.2e-06  Score=79.01  Aligned_cols=92  Identities=16%  Similarity=0.215  Sum_probs=72.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHHH
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHL   87 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl   87 (325)
                      .+++|||+|+.|+.+|..|++.|.+|+++|+.+.+..                                  -.+++.+++
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~----------------------------------~~~~~~~~l  189 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG----------------------------------LDEELSNMI  189 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT----------------------------------CCHHHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc----------------------------------CCHHHHHHH
Confidence            6899999999999999999999999999999875321                                  124677888


Q ss_pred             HHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCC
Q 020533           88 DHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF  152 (325)
Q Consensus        88 ~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~  152 (325)
                      .+..++.++..  +++++|.+++.    .  .|++.+        .+ +.+|.||+|+|  ..|+
T Consensus       190 ~~~l~~~gV~i--~~~~~v~~i~~----~--~v~~~~--------g~-i~~D~vi~a~G--~~p~  235 (367)
T 1xhc_A          190 KDMLEETGVKF--FLNSELLEANE----E--GVLTNS--------GF-IEGKVKICAIG--IVPN  235 (367)
T ss_dssp             HHHHHHTTEEE--ECSCCEEEECS----S--EEEETT--------EE-EECSCEEEECC--EEEC
T ss_pred             HHHHHHCCCEE--EcCCEEEEEEe----e--EEEECC--------CE-EEcCEEEECcC--CCcC
Confidence            88888888655  89999998861    2  355543        35 78999999999  4444

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=98.29  E-value=7.3e-07  Score=82.24  Aligned_cols=43  Identities=16%  Similarity=0.296  Sum_probs=39.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK   48 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~   48 (325)
                      ..+||+|||+|++|+++|..|++.|++|+++|+++.+||.+..
T Consensus         5 ~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~s   47 (433)
T 1d5t_A            5 EEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSS   47 (433)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTSCE
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCccccccc
Confidence            4579999999999999999999999999999999999997654

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.24  E-value=6.1e-06  Score=76.68  Aligned_cols=96  Identities=14%  Similarity=0.101  Sum_probs=75.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+..                                 ....++.+.
T Consensus       170 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~---------------------------------~~~~~~~~~  216 (463)
T 4dna_A          170 PESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILS---------------------------------RFDQDMRRG  216 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST---------------------------------TSCHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc---------------------------------ccCHHHHHH
Confidence            46899999999999999999999999999999875310                                 012367788


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEE-EeecCCCCceeEEEEEeCeEEEcccC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVK-ASNLLSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~-~~~~~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                      +.+.+++.++..  +++++|.+++.++ ++...|+ +.+        .+ +.+|.||+|+|.
T Consensus       217 l~~~l~~~Gv~i--~~~~~v~~i~~~~-~~~~~v~~~~~--------g~-i~aD~Vv~a~G~  266 (463)
T 4dna_A          217 LHAAMEEKGIRI--LCEDIIQSVSADA-DGRRVATTMKH--------GE-IVADQVMLALGR  266 (463)
T ss_dssp             HHHHHHHTTCEE--ECSCCEEEEEECT-TSCEEEEESSS--------CE-EEESEEEECSCE
T ss_pred             HHHHHHHCCCEE--ECCCEEEEEEEcC-CCEEEEEEcCC--------Ce-EEeCEEEEeeCc
Confidence            888888888665  9999999998754 2335566 544        34 789999999994

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.24  E-value=8.8e-06  Score=72.80  Aligned_cols=98  Identities=15%  Similarity=0.174  Sum_probs=70.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|++|+.+|..|.+.|.+|+++++.+.+..                                   ..++.+.
T Consensus       163 ~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~-----------------------------------~~~~~~~  207 (360)
T 3ab1_A          163 GKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQG-----------------------------------HGKTAHE  207 (360)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSS-----------------------------------CSHHHHS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCC-----------------------------------CHHHHHH
Confidence            46899999999999999999999999999998874310                                   0134555


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCc-EEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNM-WNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~-~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                      +.+..++.++.  ++++++|.+++.++  +. ..|++...++   +... +.+|.||+|+|.
T Consensus       208 l~~~~~~~gv~--i~~~~~v~~i~~~~--~~v~~v~~~~~~g---~~~~-i~~D~vi~a~G~  261 (360)
T 3ab1_A          208 VERARANGTID--VYLETEVASIEESN--GVLTRVHLRSSDG---SKWT-VEADRLLILIGF  261 (360)
T ss_dssp             SHHHHHHTSEE--EESSEEEEEEEEET--TEEEEEEEEETTC---CEEE-EECSEEEECCCB
T ss_pred             HHHHhhcCceE--EEcCcCHHHhccCC--CceEEEEEEecCC---CeEE-EeCCEEEECCCC
Confidence            66666666654  49999999998753  32 2455542111   2257 899999999994

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.21  E-value=1.6e-05  Score=70.11  Aligned_cols=96  Identities=18%  Similarity=0.161  Sum_probs=69.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|++|+.+|..|.+.|.+|+++++.+.+..                                   .    +.
T Consensus       173 ~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~-----------------------------------~----~~  213 (338)
T 3itj_A          173 NKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA-----------------------------------S----TI  213 (338)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS-----------------------------------C----HH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC-----------------------------------C----HH
Confidence            46899999999999999999999999999998875310                                   1    22


Q ss_pred             HHHHHHH-cCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533           87 LDHYVSH-FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        87 l~~~a~~-~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                      +.+.+.+ .++.  ++++++|.+++.++ .....|++.+..++  +..+ +.+|.||+|+|.
T Consensus       214 ~~~~l~~~~gv~--i~~~~~v~~i~~~~-~~~~~v~~~~~~~g--~~~~-i~~D~vi~a~G~  269 (338)
T 3itj_A          214 MQKRAEKNEKIE--ILYNTVALEAKGDG-KLLNALRIKNTKKN--EETD-LPVSGLFYAIGH  269 (338)
T ss_dssp             HHHHHHHCTTEE--EECSEEEEEEEESS-SSEEEEEEEETTTT--EEEE-EECSEEEECSCE
T ss_pred             HHHHHHhcCCeE--EeecceeEEEEccc-CcEEEEEEEECCCC--ceEE-EEeCEEEEEeCC
Confidence            2333333 3644  48999999998754 22344777663322  2367 899999999994

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.21  E-value=1.5e-05  Score=69.64  Aligned_cols=95  Identities=19%  Similarity=0.174  Sum_probs=67.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|++|+.+|..|.+.+.+|+++++.+.+.                                   ..    +.
T Consensus       144 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-----------------------------------~~----~~  184 (310)
T 1fl2_A          144 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK-----------------------------------AD----QV  184 (310)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC-----------------------------------SC----HH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccC-----------------------------------cc----HH
Confidence            4689999999999999999999999999999887521                                   00    12


Q ss_pred             HHHHHHH-cCCCceeeeCeEEEEEEEcCCCCcE-EEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533           87 LDHYVSH-FNIGPSIRYQRSVESASYDEATNMW-NVKASNLLSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        87 l~~~a~~-~~l~~~i~~~~~V~~i~~~~~~~~~-~v~~~~~~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                      +.+.+.+ .++  .+++++++.++..++  +.. .|++.+..++  +..+ +.+|.||+|+|.
T Consensus       185 ~~~~l~~~~gv--~v~~~~~v~~i~~~~--~~v~~v~~~~~~~g--~~~~-i~~D~vi~a~G~  240 (310)
T 1fl2_A          185 LQDKLRSLKNV--DIILNAQTTEVKGDG--SKVVGLEYRDRVSG--DIHN-IELAGIFVQIGL  240 (310)
T ss_dssp             HHHHHHTCTTE--EEESSEEEEEEEESS--SSEEEEEEEETTTC--CEEE-EECSEEEECSCE
T ss_pred             HHHHHhhCCCe--EEecCCceEEEEcCC--CcEEEEEEEECCCC--cEEE-EEcCEEEEeeCC
Confidence            3333343 454  458999999997653  333 4666653222  2357 899999999994

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.19  E-value=7.5e-06  Score=78.43  Aligned_cols=94  Identities=13%  Similarity=0.176  Sum_probs=74.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+++|||+|.+|+.+|..|.+.|.+|+++++.+.+..                                 ....++.+.
T Consensus       187 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------~~~~~~~~~  233 (588)
T 3ics_A          187 PRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMP---------------------------------PIDYEMAAY  233 (588)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT---------------------------------TSCHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCcccc---------------------------------cCCHHHHHH
Confidence            46899999999999999999999999999998875320                                 012367788


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                      +.+.+++.++..  +++++|.+++.+.  +  .|.+.++       .+ +.+|.||+|+|.
T Consensus       234 l~~~l~~~GV~i--~~~~~v~~i~~~~--~--~v~~~~g-------~~-i~~D~Vi~a~G~  280 (588)
T 3ics_A          234 VHEHMKNHDVEL--VFEDGVDALEENG--A--VVRLKSG-------SV-IQTDMLILAIGV  280 (588)
T ss_dssp             HHHHHHHTTCEE--ECSCCEEEEEGGG--T--EEEETTS-------CE-EECSEEEECSCE
T ss_pred             HHHHHHHcCCEE--EECCeEEEEecCC--C--EEEECCC-------CE-EEcCEEEEccCC
Confidence            888888888655  8999999997643  2  3555543       56 899999999994

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.19  E-value=5.8e-06  Score=74.11  Aligned_cols=108  Identities=10%  Similarity=0.125  Sum_probs=71.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|.+|+.+|..|.+.|.+|+++++.+.+...    .              +       + +.......+.++
T Consensus       166 ~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~----~--------------~-------d-~~~~~~~~~~~~  219 (369)
T 3d1c_A          166 KGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDP----D--------------A-------D-PSVRLSPYTRQR  219 (369)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCEEEEECC------------------------------------CTTSCCHHHHHH
T ss_pred             CCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCC----C--------------C-------C-CCccCCHHHHHH
Confidence            358999999999999999999999999999998753200    0              0       0 011122355667


Q ss_pred             HHHHHHHcC-CCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533           87 LDHYVSHFN-IGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (325)
Q Consensus        87 l~~~a~~~~-l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~  153 (325)
                      +.+..++.+ +..  +.+++|.+++.++  +.+.|++.++.      .. ..+|.||+|+|  ..|+.
T Consensus       220 l~~~l~~~g~v~~--~~~~~v~~i~~~~--~~~~v~~~~g~------~~-~~~d~vi~a~G--~~~~~  274 (369)
T 3d1c_A          220 LGNVIKQGARIEM--NVHYTVKDIDFNN--GQYHISFDSGQ------SV-HTPHEPILATG--FDATK  274 (369)
T ss_dssp             HHHHHHTTCCEEE--ECSCCEEEEEEET--TEEEEEESSSC------CE-EESSCCEECCC--BCGGG
T ss_pred             HHHHHhhCCcEEE--ecCcEEEEEEecC--CceEEEecCCe------Ee-ccCCceEEeec--cCCcc
Confidence            777766664 554  8899999987644  45667776541      22 34699999999  44543

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.18  E-value=8e-06  Score=75.56  Aligned_cols=95  Identities=16%  Similarity=0.239  Sum_probs=69.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+...                                ....++.+.
T Consensus       148 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~--------------------------------~~~~~~~~~  195 (449)
T 3kd9_A          148 VENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRR--------------------------------SFDKEVTDI  195 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT--------------------------------TSCHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchh--------------------------------hcCHHHHHH
Confidence            468999999999999999999999999999998753210                                011366777


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                      +.+..++.   ..++++++|.+++.++   .......++       .+ +.+|.||+|+|.
T Consensus       196 l~~~l~~~---v~i~~~~~v~~i~~~~---~v~~v~~~g-------~~-i~~D~Vv~a~G~  242 (449)
T 3kd9_A          196 LEEKLKKH---VNLRLQEITMKIEGEE---RVEKVVTDA-------GE-YKAELVILATGI  242 (449)
T ss_dssp             HHHHHTTT---SEEEESCCEEEEECSS---SCCEEEETT-------EE-EECSEEEECSCE
T ss_pred             HHHHHHhC---cEEEeCCeEEEEeccC---cEEEEEeCC-------CE-EECCEEEEeeCC
Confidence            77777665   4458999999887543   222222222       57 899999999994

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.17  E-value=2.4e-05  Score=68.81  Aligned_cols=95  Identities=14%  Similarity=0.085  Sum_probs=69.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+++|||+|.+|+.+|..|.+.+.+|+++++.+.+..                                  . ...   
T Consensus       154 ~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~----------------------------------~-~~~---  195 (332)
T 3lzw_A          154 GRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRA----------------------------------H-EHS---  195 (332)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSS----------------------------------C-HHH---
T ss_pred             CCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCc----------------------------------c-HHH---
Confidence            46899999999999999999999999999998874210                                  0 111   


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                       .+.+++.++..  +.++++.+++.++  +...|++.+...+  +..+ +.+|.||+|+|.
T Consensus       196 -~~~l~~~gv~~--~~~~~v~~i~~~~--~~~~v~~~~~~~g--~~~~-~~~D~vv~a~G~  248 (332)
T 3lzw_A          196 -VENLHASKVNV--LTPFVPAELIGED--KIEQLVLEEVKGD--RKEI-LEIDDLIVNYGF  248 (332)
T ss_dssp             -HHHHHHSSCEE--ETTEEEEEEECSS--SCCEEEEEETTSC--CEEE-EECSEEEECCCE
T ss_pred             -HHHHhcCCeEE--EeCceeeEEecCC--ceEEEEEEecCCC--ceEE-EECCEEEEeecc
Confidence             12245667554  8999999997654  3456777664332  2367 899999999994

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=98.16  E-value=1.5e-06  Score=80.60  Aligned_cols=42  Identities=21%  Similarity=0.301  Sum_probs=38.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK   47 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~   47 (325)
                      ..+||+|||+|++|+++|..|++.|.+|+++|+++.+||.+.
T Consensus        19 ~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg~~~   60 (475)
T 3p1w_A           19 EHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETA   60 (475)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCCCcc
Confidence            457999999999999999999999999999999999998543

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.14  E-value=2.8e-05  Score=68.19  Aligned_cols=96  Identities=20%  Similarity=0.165  Sum_probs=67.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|++|+.+|..|.+.|.+|+++++.+.+.                                   ....+   
T Consensus       155 ~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~-----------------------------------~~~~l---  196 (319)
T 3cty_A          155 GKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYM-----------------------------------CENAY---  196 (319)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCC-----------------------------------SCHHH---
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccC-----------------------------------CCHHH---
Confidence            3689999999999999999999999999999876421                                   00122   


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                       .+.+.+.++..  ++++++.++..++ .....|.+.+...+  +..+ +.+|.||+|+|.
T Consensus       197 -~~~l~~~gv~i--~~~~~v~~i~~~~-~~v~~v~~~~~~~g--~~~~-i~~D~vi~a~G~  250 (319)
T 3cty_A          197 -VQEIKKRNIPY--IMNAQVTEIVGDG-KKVTGVKYKDRTTG--EEKL-IETDGVFIYVGL  250 (319)
T ss_dssp             -HHHHHHTTCCE--ECSEEEEEEEESS-SSEEEEEEEETTTC--CEEE-ECCSEEEECCCE
T ss_pred             -HHHHhcCCcEE--EcCCeEEEEecCC-ceEEEEEEEEcCCC--ceEE-EecCEEEEeeCC
Confidence             33344567655  9999999998653 11234555532111  2257 899999999994

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.14  E-value=9.4e-06  Score=71.52  Aligned_cols=96  Identities=16%  Similarity=0.248  Sum_probs=66.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|.+|+.+|..|.+.|.+|+++++.+.+..                                   ...+   
T Consensus       152 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-----------------------------------~~~~---  193 (325)
T 2q7v_A          152 GKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLRA-----------------------------------NKVA---  193 (325)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCS-----------------------------------CHHH---
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCCc-----------------------------------chHH---
Confidence            46899999999999999999999999999998864210                                   0122   


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                      ..+..++.++  .++++++++++..++  ....|.+.+...+  +..+ +.+|.||+|+|.
T Consensus       194 ~~~l~~~~gv--~i~~~~~v~~i~~~~--~v~~v~~~~~~~g--~~~~-i~~D~vi~a~G~  247 (325)
T 2q7v_A          194 QARAFANPKM--KFIWDTAVEEIQGAD--SVSGVKLRNLKTG--EVSE-LATDGVFIFIGH  247 (325)
T ss_dssp             HHHHHTCTTE--EEECSEEEEEEEESS--SEEEEEEEETTTC--CEEE-EECSEEEECSCE
T ss_pred             HHHHHhcCCc--eEecCCceEEEccCC--cEEEEEEEECCCC--cEEE-EEcCEEEEccCC
Confidence            2222223354  458999999997642  3335666542111  2257 899999999994

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.13  E-value=2.6e-06  Score=76.45  Aligned_cols=36  Identities=28%  Similarity=0.420  Sum_probs=33.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      ..+||+|||||++|+++|+.|+++|.+|+|+|+...
T Consensus         5 ~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~~   40 (363)
T 1c0p_A            5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDLP   40 (363)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccCC
Confidence            457999999999999999999999999999999753

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.13  E-value=1.4e-05  Score=74.39  Aligned_cols=104  Identities=18%  Similarity=0.267  Sum_probs=72.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+...                               + ..+++.+.
T Consensus       172 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-------------------------------~-~d~~~~~~  219 (466)
T 3l8k_A          172 PQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALIT-------------------------------L-EDQDIVNT  219 (466)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-------------------------------S-CCHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCC-------------------------------C-CCHHHHHH
Confidence            468999999999999999999999999999998753210                               0 01345555


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p  154 (325)
                      +.+..+     ..++++++|.+++.++ .+...+.+.+.++   +..+ +.+|.||+|+|  ..|+..
T Consensus       220 l~~~l~-----v~i~~~~~v~~i~~~~-~~~v~v~~~~~~G---~~~~-i~~D~vi~a~G--~~p~~~  275 (466)
T 3l8k_A          220 LLSILK-----LNIKFNSPVTEVKKIK-DDEYEVIYSTKDG---SKKS-IFTNSVVLAAG--RRPVIP  275 (466)
T ss_dssp             HHHHHC-----CCEECSCCEEEEEEEE-TTEEEEEECCTTS---CCEE-EEESCEEECCC--EEECCC
T ss_pred             HHhcCE-----EEEEECCEEEEEEEcC-CCcEEEEEEecCC---ceEE-EEcCEEEECcC--CCcccc
Confidence            554433     4458999999987643 1445566653111   2257 89999999999  445443

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=98.12  E-value=1.5e-06  Score=79.97  Aligned_cols=34  Identities=24%  Similarity=0.368  Sum_probs=31.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ++||+|||||++|+++|..|++.|++|+|+|+.+
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            4799999999999999999999999999999986

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=98.12  E-value=2.4e-06  Score=82.97  Aligned_cols=43  Identities=28%  Similarity=0.344  Sum_probs=39.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK   48 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~   48 (325)
                      ..++|+|||||++||++|..|.+.|++|+|+|+++.+||.+..
T Consensus       106 ~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~~  148 (662)
T 2z3y_A          106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVAT  148 (662)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCE
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcccc
Confidence            4579999999999999999999999999999999999986544

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.11  E-value=1.8e-05  Score=69.80  Aligned_cols=98  Identities=18%  Similarity=0.285  Sum_probs=67.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|.+|+.+|..|.+.|.+|+++++.+.+.                                   ....+   
T Consensus       159 ~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~-----------------------------------~~~~~---  200 (333)
T 1vdc_A          159 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFR-----------------------------------ASKIM---  200 (333)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCC-----------------------------------SCHHH---
T ss_pred             CCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCC-----------------------------------ccHHH---
Confidence            4689999999999999999999999999999987531                                   00111   


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcE-EEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMW-NVKASNLLSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~-~v~~~~~~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                      ..+..++.++  .+++++++.+++.+++.... .|.+.+...+  +..+ +.+|.||+|+|.
T Consensus       201 ~~~~~~~~gv--~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g--~~~~-i~~D~vi~a~G~  257 (333)
T 1vdc_A          201 QQRALSNPKI--DVIWNSSVVEAYGDGERDVLGGLKVKNVVTG--DVSD-LKVSGLFFAIGH  257 (333)
T ss_dssp             HHHHHTCTTE--EEECSEEEEEEEESSSSSSEEEEEEEETTTC--CEEE-EECSEEEECSCE
T ss_pred             HHHHHhCCCe--eEecCCceEEEeCCCCccceeeEEEEecCCC--ceEE-EecCEEEEEeCC
Confidence            1233344554  45889999999865411132 3666542111  2257 899999999994

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=98.11  E-value=6e-05  Score=72.31  Aligned_cols=105  Identities=15%  Similarity=0.089  Sum_probs=72.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|..|+.+|..|++.|.+|+++++. .+.                      +         .  ...++.++
T Consensus       286 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~l----------------------~---------~--~d~~~~~~  331 (598)
T 2x8g_A          286 PGKTLVIGASYVALECAGFLASLGGDVTVMVRS-ILL----------------------R---------G--FDQQMAEK  331 (598)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSS----------------------T---------T--SCHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC-cCc----------------------C---------c--CCHHHHHH
Confidence            357999999999999999999999999999987 211                      0         0  11356777


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEc-----C--CCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYD-----E--ATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~-----~--~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~  153 (325)
                      +.+..++.++..  ++++++.++...     +  ..+...+.....++   +... +.+|.||+|+|  ..|+.
T Consensus       332 ~~~~l~~~gv~i--~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g---~~~~-~~~D~vi~a~G--~~p~~  397 (598)
T 2x8g_A          332 VGDYMENHGVKF--AKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDG---KKFE-EEFETVIFAVG--REPQL  397 (598)
T ss_dssp             HHHHHHHTTCEE--EETEEEEEEEEEECCBTTTTBCCEEEEEEEETTS---CEEE-EEESEEEECSC--EEECG
T ss_pred             HHHHHHhCCCEE--EECCeEEEEEeccccccccCCCceEEEEEEeCCC---cEEe-ccCCEEEEEeC--Ccccc
Confidence            888888888655  889888877542     1  12445555432222   2234 56999999999  44543

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.10  E-value=2.3e-05  Score=68.54  Aligned_cols=96  Identities=21%  Similarity=0.232  Sum_probs=69.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+..                                   .+   ++
T Consensus       154 ~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~-----------------------------------~~---~~  195 (323)
T 3f8d_A          154 NRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKA-----------------------------------QP---IY  195 (323)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCS-----------------------------------CH---HH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCc-----------------------------------CH---HH
Confidence            46899999999999999999999999999998875310                                   01   23


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                      +.+..++.++  .+++++++.+++.++  ....|++.+...+  +..+ +.+|.||+|+|.
T Consensus       196 ~~~~~~~~gv--~~~~~~~v~~i~~~~--~~~~v~~~~~~~g--~~~~-~~~D~vv~a~G~  249 (323)
T 3f8d_A          196 VETVKKKPNV--EFVLNSVVKEIKGDK--VVKQVVVENLKTG--EIKE-LNVNGVFIEIGF  249 (323)
T ss_dssp             HHHHHTCTTE--EEECSEEEEEEEESS--SEEEEEEEETTTC--CEEE-EECSEEEECCCE
T ss_pred             HHHHHhCCCc--EEEeCCEEEEEeccC--ceeEEEEEECCCC--ceEE-EEcCEEEEEECC
Confidence            3333344454  458999999997653  4455777663222  2257 899999999994

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.09  E-value=1.2e-05  Score=70.16  Aligned_cols=97  Identities=15%  Similarity=0.151  Sum_probs=66.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|++|+.+|..|.+.|.+|+++++.+.+.                                   ...++.  
T Consensus       143 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-----------------------------------~~~~~~--  185 (311)
T 2q0l_A          143 NKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFR-----------------------------------CAPITL--  185 (311)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCC-----------------------------------SCHHHH--
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccC-----------------------------------CCHHHH--
Confidence            4689999999999999999999999999999886421                                   001222  


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                       ....++.+  ..+++++++.+++.++ ++...|.+.+...+  +..+ +.+|.||+|+|.
T Consensus       186 -~~l~~~~g--v~v~~~~~v~~i~~~~-~~v~~v~~~~~~~g--~~~~-i~~D~vi~a~G~  239 (311)
T 2q0l_A          186 -EHAKNNDK--IEFLTPYVVEEIKGDA-SGVSSLSIKNTATN--EKRE-LVVPGFFIFVGY  239 (311)
T ss_dssp             -HHHHTCTT--EEEETTEEEEEEEEET-TEEEEEEEEETTTC--CEEE-EECSEEEECSCE
T ss_pred             -HHHhhCCC--eEEEeCCEEEEEECCC-CcEeEEEEEecCCC--ceEE-EecCEEEEEecC
Confidence             22222345  4458899999997653 12224666532111  2257 899999999994

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=98.09  E-value=8.4e-06  Score=76.49  Aligned_cols=100  Identities=15%  Similarity=0.149  Sum_probs=72.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhc--------------CCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQ--------------SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSS   73 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~--------------g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~   73 (325)
                      ..++|||||+.|+.+|..|.+.              ..+|+++|..+.+-.                             
T Consensus       218 ~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il~-----------------------------  268 (502)
T 4g6h_A          218 LSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLN-----------------------------  268 (502)
T ss_dssp             TEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSST-----------------------------
T ss_pred             cceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEecccccccc-----------------------------
Confidence            3699999999999999988753              368999999986421                             


Q ss_pred             CCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCC
Q 020533           74 YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET  148 (325)
Q Consensus        74 ~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~  148 (325)
                        .  -.+++.+++.+..++.|+..  +++++|++++.+    ...+.....++. ....+ +.||.||+|+|..
T Consensus       269 --~--~~~~~~~~~~~~L~~~GV~v--~~~~~v~~v~~~----~~~~~~~~~dg~-~~~~~-i~ad~viwa~Gv~  331 (502)
T 4g6h_A          269 --M--FEKKLSSYAQSHLENTSIKV--HLRTAVAKVEEK----QLLAKTKHEDGK-ITEET-IPYGTLIWATGNK  331 (502)
T ss_dssp             --T--SCHHHHHHHHHHHHHTTCEE--ETTEEEEEECSS----EEEEEEECTTSC-EEEEE-EECSEEEECCCEE
T ss_pred             --C--CCHHHHHHHHHHHHhcceee--ecCceEEEEeCC----ceEEEEEecCcc-cceee-eccCEEEEccCCc
Confidence              1  12478889999999999765  999999998643    233333322211 01257 8999999999943

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.08  E-value=1.2e-05  Score=71.24  Aligned_cols=96  Identities=14%  Similarity=0.192  Sum_probs=66.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|.+|+.+|..|.+.|.+|+++++.+.+..                          .         ..+.  
T Consensus       155 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~--------------------------~---------~~~~--  197 (335)
T 2a87_A          155 DQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRA--------------------------S---------KIML--  197 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCSS--------------------------C---------TTHH--
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCc--------------------------c---------HHHH--
Confidence            46899999999999999999999999999998864310                          0         0111  


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                       .+..++.++.  ++++++|.+++.++  +...|.+.+...+  +..+ +.+|.||+|+|.
T Consensus       198 -~~~~~~~gV~--v~~~~~v~~i~~~~--~~~~v~~~~~~~g--~~~~-i~~D~vi~a~G~  250 (335)
T 2a87_A          198 -DRARNNDKIR--FLTNHTVVAVDGDT--TVTGLRVRDTNTG--AETT-LPVTGVFVAIGH  250 (335)
T ss_dssp             -HHHHHCTTEE--EECSEEEEEEECSS--SCCEEEEEEETTS--CCEE-ECCSCEEECSCE
T ss_pred             -HHHhccCCcE--EEeCceeEEEecCC--cEeEEEEEEcCCC--ceEE-eecCEEEEccCC
Confidence             1233445644  48899999987653  3233555432111  2257 899999999994

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=98.08  E-value=3.5e-06  Score=83.56  Aligned_cols=43  Identities=28%  Similarity=0.344  Sum_probs=39.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK   48 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~   48 (325)
                      ..++|+|||||++||++|..|.+.|++|+|||+.+.+||.+..
T Consensus       277 ~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~GG~~~~  319 (852)
T 2xag_A          277 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVAT  319 (852)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCCE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCCCceee
Confidence            3579999999999999999999999999999999999986543

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.05  E-value=2.2e-06  Score=77.76  Aligned_cols=84  Identities=13%  Similarity=0.044  Sum_probs=65.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++|+.+.+...                                .-..++.++
T Consensus       146 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~--------------------------------~~~~~~~~~  193 (385)
T 3klj_A          146 KGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLER--------------------------------QLDRDGGLF  193 (385)
T ss_dssp             HSCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTT--------------------------------TSCHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchh--------------------------------hcCHHHHHH
Confidence            358999999999999999999999999999999864210                                012467788


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                      +.+..++.++..  ++++++.++               +       .+ +.+|.||+|+|.
T Consensus       194 ~~~~l~~~gV~~--~~~~~v~~i---------------g-------~~-~~~D~vv~a~G~  229 (385)
T 3klj_A          194 LKDKLDRLGIKI--YTNSNFEEM---------------G-------DL-IRSSCVITAVGV  229 (385)
T ss_dssp             HHHHHHTTTCEE--ECSCCGGGC---------------H-------HH-HHHSEEEECCCE
T ss_pred             HHHHHHhCCCEE--EeCCEEEEc---------------C-------eE-EecCeEEECcCc
Confidence            888888888654  777776544               1       45 789999999994

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.03  E-value=3.5e-06  Score=81.13  Aligned_cols=41  Identities=17%  Similarity=0.210  Sum_probs=37.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCcc
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW   46 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w   46 (325)
                      ..+||+|||||++|+++|..|++.|++|+|+|+.+..||.+
T Consensus        45 ~~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~gg~~   85 (623)
T 3pl8_A           45 IKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLK   85 (623)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSS
T ss_pred             ccCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCCCcc
Confidence            35799999999999999999999999999999999888755

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=97.93  E-value=4.7e-06  Score=74.39  Aligned_cols=34  Identities=26%  Similarity=0.516  Sum_probs=31.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhcC------CCeEEEecCCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQS------IPYVILERENC   41 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g------~~v~v~e~~~~   41 (325)
                      +||+|||||++|+++|+.|+++|      .+|+|+|++..
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~   40 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFT   40 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCG
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCC
Confidence            48999999999999999999998      89999999863

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.93  E-value=6.6e-05  Score=70.79  Aligned_cols=95  Identities=20%  Similarity=0.158  Sum_probs=67.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|.+|+.+|..|++.|.+|+++++.+.+.                                  . .    .+
T Consensus       355 ~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~----------------------------------~-~----~~  395 (521)
T 1hyu_A          355 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK----------------------------------A-D----QV  395 (521)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCC----------------------------------S-C----HH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccC----------------------------------c-C----HH
Confidence            4689999999999999999999999999999887521                                  0 0    23


Q ss_pred             HHHHHHH-cCCCceeeeCeEEEEEEEcCCCCcE-EEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533           87 LDHYVSH-FNIGPSIRYQRSVESASYDEATNMW-NVKASNLLSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        87 l~~~a~~-~~l~~~i~~~~~V~~i~~~~~~~~~-~v~~~~~~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                      +.+.+.+ .+  ..++++++++++..++  +.. .+.+.+..++  +..+ +.+|.|++|+|.
T Consensus       396 l~~~l~~~~g--V~v~~~~~v~~i~~~~--~~v~~v~~~~~~~g--~~~~-i~~D~vi~a~G~  451 (521)
T 1hyu_A          396 LQDKVRSLKN--VDIILNAQTTEVKGDG--SKVVGLEYRDRVSG--DIHS-VALAGIFVQIGL  451 (521)
T ss_dssp             HHHHHTTCTT--EEEECSEEEEEEEECS--SSEEEEEEEETTTC--CEEE-EECSEEEECCCE
T ss_pred             HHHHHhcCCC--cEEEeCCEEEEEEcCC--CcEEEEEEEeCCCC--ceEE-EEcCEEEECcCC
Confidence            3333443 34  4458999999987643  333 4666653222  3357 899999999993

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=97.91  E-value=3.8e-05  Score=66.95  Aligned_cols=96  Identities=17%  Similarity=0.162  Sum_probs=67.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+++|||+|+.|+.+|..|.+.+.+|+++++.+.+.                                   ..   .++
T Consensus       147 ~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~-----------------------------------~~---~~~  188 (315)
T 3r9u_A          147 NKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFR-----------------------------------AA---PST  188 (315)
T ss_dssp             TSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCB-----------------------------------SC---HHH
T ss_pred             cCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCC-----------------------------------CC---HHH
Confidence            4689999999999999999999999999999887421                                   00   123


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                      +.+..++.++.  +++++++.+++.++ .....|++...++   +..+ +.+|.||+|+|.
T Consensus       189 ~~~~~~~~gv~--~~~~~~v~~i~~~~-~~~~~v~~~~~~g---~~~~-~~~D~vv~a~G~  242 (315)
T 3r9u_A          189 VEKVKKNEKIE--LITSASVDEVYGDK-MGVAGVKVKLKDG---SIRD-LNVPGIFTFVGL  242 (315)
T ss_dssp             HHHHHHCTTEE--EECSCEEEEEEEET-TEEEEEEEECTTS---CEEE-ECCSCEEECSCE
T ss_pred             HHHHHhcCCeE--EEeCcEEEEEEcCC-CcEEEEEEEcCCC---CeEE-eecCeEEEEEcC
Confidence            33444556644  48999999997654 1223355552111   2257 899999999994

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=97.86  E-value=6.7e-05  Score=65.51  Aligned_cols=101  Identities=20%  Similarity=0.244  Sum_probs=63.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|..|+.+|..|.+.|.+|+++++.+..-                                  .. .+   .
T Consensus       152 ~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~~----------------------------------~~-~~---~  193 (314)
T 4a5l_A          152 NKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAFR----------------------------------AS-KT---M  193 (314)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC----------------------------------SC-HH---H
T ss_pred             CCeEEEECCChHHHHHHHHHHHhCCeeeeeccccccc----------------------------------cc-ch---h
Confidence            4689999999999999999999999999999765310                                  00 11   1


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~  153 (325)
                      ........+  ......+.+..+..... ..-.+...+...+  +..+ +.+|.|++|+|  ..|+.
T Consensus       194 ~~~~~~~~~--~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~--~~~~-i~~d~vi~a~G--~~pn~  252 (314)
T 4a5l_A          194 QERVLNHPK--IEVIWNSELVELEGDGD-LLNGAKIHNLVSG--EYKV-VPVAGLFYAIG--HSPNS  252 (314)
T ss_dssp             HHHHHTCTT--EEEECSEEEEEEEESSS-SEEEEEEEETTTC--CEEE-EECSEEEECSC--EEESC
T ss_pred             hhhhhcccc--eeeEeeeeeEEEEeeee-ccceeEEeecccc--ccee-eccccceEecc--cccCh
Confidence            122222223  33366666776665431 2222344333222  2367 99999999999  55554

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=97.86  E-value=4.1e-05  Score=74.69  Aligned_cols=98  Identities=11%  Similarity=0.039  Sum_probs=69.6

Q ss_pred             CCeEEEEC--CChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHH
Q 020533            7 GVEVIMVG--AGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI   84 (325)
Q Consensus         7 ~~~v~IIG--aG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (325)
                      ..+|+|||  +|..|+.+|..|.+.|.+|+++++.+.+.....                                ...+.
T Consensus       523 g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~~--------------------------------~~~~~  570 (690)
T 3k30_A          523 GKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTN--------------------------------NTFEV  570 (690)
T ss_dssp             SSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGGG--------------------------------GGTCH
T ss_pred             CCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccccccccc--------------------------------cchhH
Confidence            45799999  999999999999999999999999876431100                                01124


Q ss_pred             HHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533           85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        85 ~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                      ..+.+.+++.++..  +.+++|++++.+    ...+......    +..+ +.+|.||+|+|.
T Consensus       571 ~~l~~~l~~~GV~i--~~~~~V~~i~~~----~~~v~~~~~~----~~~~-i~aD~VV~A~G~  622 (690)
T 3k30_A          571 NRIQRRLIENGVAR--VTDHAVVAVGAG----GVTVRDTYAS----IERE-LECDAVVMVTAR  622 (690)
T ss_dssp             HHHHHHHHHTTCEE--EESEEEEEEETT----EEEEEETTTC----CEEE-EECSEEEEESCE
T ss_pred             HHHHHHHHHCCCEE--EcCcEEEEEECC----eEEEEEccCC----eEEE-EECCEEEECCCC
Confidence            55666777778655  999999998743    2233322111    1267 899999999993

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=97.86  E-value=1.9e-05  Score=68.30  Aligned_cols=84  Identities=6%  Similarity=-0.057  Sum_probs=62.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|++|+.+|..|.+.| +|+++++.+.                                        .+.+.
T Consensus       141 ~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~----------------------------------------~~~~~  179 (297)
T 3fbs_A          141 QGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIV----------------------------------------EPDAD  179 (297)
T ss_dssp             TCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTC----------------------------------------CCCHH
T ss_pred             CCEEEEEecCccHHHHHHHhhhcC-cEEEEECCCC----------------------------------------CCCHH
Confidence            468999999999999999999999 9999987653                                        00133


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                      +.+.+++.++..  + +++|.+++.+   +  .|++.++       .+ +.+|.||+|+|.
T Consensus       180 ~~~~l~~~gv~i--~-~~~v~~i~~~---~--~v~~~~g-------~~-~~~D~vi~a~G~  224 (297)
T 3fbs_A          180 QHALLAARGVRV--E-TTRIREIAGH---A--DVVLADG-------RS-IALAGLFTQPKL  224 (297)
T ss_dssp             HHHHHHHTTCEE--E-CSCEEEEETT---E--EEEETTS-------CE-EEESEEEECCEE
T ss_pred             HHHHHHHCCcEE--E-cceeeeeecC---C--eEEeCCC-------CE-EEEEEEEEccCc
Confidence            455666777654  4 4788887642   1  5666654       56 899999999994

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=97.80  E-value=2.4e-05  Score=70.17  Aligned_cols=36  Identities=28%  Similarity=0.278  Sum_probs=33.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA   43 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~G   43 (325)
                      +||+|||||++|+.+|..|++.|.+|+|+|+++..+
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~~~   37 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKRM   37 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTSC
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCCcC
Confidence            689999999999999999999999999999987543

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=97.79  E-value=2.4e-05  Score=74.95  Aligned_cols=48  Identities=19%  Similarity=0.383  Sum_probs=43.5

Q ss_pred             CCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC
Q 020533            2 KEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY   49 (325)
Q Consensus         2 ~~~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~   49 (325)
                      ..++.++||+|||+|..|..+|..|++.|.+|+++||++..||.|...
T Consensus         3 ~~~~~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg~~~~~   50 (650)
T 1vg0_A            3 DNLPSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASF   50 (650)
T ss_dssp             CCCCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEE
T ss_pred             ccCCCcCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccCccccc
Confidence            344557999999999999999999999999999999999999998864

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=97.71  E-value=0.00013  Score=67.65  Aligned_cols=35  Identities=14%  Similarity=0.051  Sum_probs=32.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      ..+|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus       197 ~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~  231 (464)
T 2xve_A          197 DKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTA  231 (464)
T ss_dssp             TSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCC
Confidence            46899999999999999999999999999998875

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=97.69  E-value=1.2e-05  Score=77.90  Aligned_cols=36  Identities=25%  Similarity=0.418  Sum_probs=34.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcC--------CCeEEEecCC-CC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQS--------IPYVILEREN-CY   42 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g--------~~v~v~e~~~-~~   42 (325)
                      .++|+|||||++||++|..|.+.|        ++|+|||+++ ++
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence            468999999999999999999998        8999999999 88

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=97.63  E-value=0.00037  Score=60.76  Aligned_cols=35  Identities=17%  Similarity=0.305  Sum_probs=32.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      .++|+|||||+.|+.+|..|++.|.+|+|+++.+.
T Consensus       145 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~  179 (312)
T 4gcm_A          145 NKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDE  179 (312)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEecccc
Confidence            46899999999999999999999999999999875

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.63  E-value=0.00032  Score=70.96  Aligned_cols=97  Identities=12%  Similarity=0.126  Sum_probs=69.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||+|+.|+.+|..|.+.|.+|+|+|+.+.+.                                    . .    
T Consensus       284 gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~------------------------------------~-~----  322 (965)
T 2gag_A          284 GARIAVATTNDSAYELVRELAATGGVVAVIDARSSIS------------------------------------A-A----  322 (965)
T ss_dssp             CSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCC------------------------------------H-H----
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccc------------------------------------h-h----
Confidence            3689999999999999999999999999999987521                                    0 1    


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEee--cC--CCCceeEEEEEeCeEEEcccCCCCCC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASN--LL--SPGREIEEYYSGRFLVVASGETTNPF  152 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~--~~--~~~~~~~~~~~ad~vIiAtG~~~~p~  152 (325)
                       .+.+++.++..  ++++.|.++..+++.....|++.+  ..  .+  +..+ +.+|.||+|+|  ..|+
T Consensus       323 -~~~l~~~GV~v--~~~~~v~~i~~~~~~~v~~v~~~~~~~~~~~G--~~~~-i~~D~Vv~a~G--~~P~  384 (965)
T 2gag_A          323 -AAQAVADGVQV--ISGSVVVDTEADENGELSAIVVAELDEARELG--GTQR-FEADVLAVAGG--FNPV  384 (965)
T ss_dssp             -HHHHHHTTCCE--EETEEEEEEEECTTSCEEEEEEEEECTTCCEE--EEEE-EECSEEEEECC--EEEC
T ss_pred             -HHHHHhCCeEE--EeCCEeEEEeccCCCCEEEEEEEeccccCCCC--ceEE-EEcCEEEECCC--cCcC
Confidence             23456678765  999999999763112323455554  10  01  2257 89999999999  4454

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=97.55  E-value=0.00039  Score=65.71  Aligned_cols=35  Identities=20%  Similarity=0.328  Sum_probs=33.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      .++|+|||+|.+|+.+|..|++.+.+|+++++.+.
T Consensus       178 ~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  212 (540)
T 3gwf_A          178 GRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ  212 (540)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred             cceEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            46899999999999999999999999999999885

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=97.53  E-value=6.3e-05  Score=70.88  Aligned_cols=36  Identities=25%  Similarity=0.407  Sum_probs=32.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHh-cCCCeEEEecCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSL-QSIPYVILERENC   41 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~-~g~~v~v~e~~~~   41 (325)
                      ..||++|||+|++|+.+|.+|++ .+++|+|+|+.+.
T Consensus        16 ~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~   52 (526)
T 3t37_A           16 PNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEE   52 (526)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBC
T ss_pred             CCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCC
Confidence            46899999999999999999998 5789999998764

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=97.53  E-value=0.00025  Score=65.43  Aligned_cols=35  Identities=17%  Similarity=0.078  Sum_probs=32.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCC-eEEEecCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIP-YVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~-v~v~e~~~~   41 (325)
                      ..+|+|||+|.+|+-+|..|++.+.+ |+++++.+.
T Consensus       212 ~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~  247 (447)
T 2gv8_A          212 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGG  247 (447)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCC
T ss_pred             CCEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCC
Confidence            46899999999999999999999998 999998864

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=97.51  E-value=7.2e-05  Score=70.93  Aligned_cols=36  Identities=33%  Similarity=0.444  Sum_probs=33.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      ..+|++|||+|++|+.+|.+|++.|.+|+|+|+.+.
T Consensus         6 ~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~   41 (546)
T 1kdg_A            6 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP   41 (546)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            468999999999999999999999999999999763

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.47  E-value=0.0004  Score=64.22  Aligned_cols=36  Identities=22%  Similarity=0.316  Sum_probs=32.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCC-eEEEecCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIP-YVILERENC   41 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~-v~v~e~~~~   41 (325)
                      ..++|+|||+|..|+-+|..+.+.|.+ |+++++.+.
T Consensus       263 ~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~  299 (456)
T 2vdc_G          263 AGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDR  299 (456)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCS
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCc
Confidence            356899999999999999999999984 999988864

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.47  E-value=0.0013  Score=60.90  Aligned_cols=35  Identities=20%  Similarity=0.260  Sum_probs=30.9

Q ss_pred             CCeEEEECCChHHHHHHHHHH--------------------hcCC-CeEEEecCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLS--------------------LQSI-PYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~--------------------~~g~-~v~v~e~~~~   41 (325)
                      ..+|+|||+|..|+.+|..|.                    +.|. +|+|+++.+.
T Consensus       145 ~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~  200 (460)
T 1cjc_A          145 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP  200 (460)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             CCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCCh
Confidence            468999999999999999999                    5687 6999998874

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.41  E-value=0.00097  Score=61.66  Aligned_cols=36  Identities=28%  Similarity=0.440  Sum_probs=30.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhc--------------------CC-CeEEEecCCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQ--------------------SI-PYVILERENCY   42 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~--------------------g~-~v~v~e~~~~~   42 (325)
                      ..+|+|||+|..|+-+|..|.+.                    |. +|+|+++.+.+
T Consensus       147 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~  203 (456)
T 1lqt_A          147 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPL  203 (456)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChh
Confidence            46899999999999999999874                    54 89999988753

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=97.41  E-value=0.00027  Score=65.00  Aligned_cols=103  Identities=11%  Similarity=0.024  Sum_probs=64.6

Q ss_pred             CeEEEECCChHH------HHHH----HHHHhcCCC-----eEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCC
Q 020533            8 VEVIMVGAGTSG------LATA----ACLSLQSIP-----YVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPS   72 (325)
Q Consensus         8 ~~v~IIGaG~~G------l~~a----~~L~~~g~~-----v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~   72 (325)
                      .+++|||+|++|      +..|    ..|.+.|.+     |+++++.+.++...                  +       
T Consensus       150 ~~~vVVGgG~~~g~~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~~~~~~------------------l-------  204 (437)
T 3sx6_A          150 PGPIVIGAMAGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLG------------------I-------  204 (437)
T ss_dssp             CCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSSSTTCTT------------------T-------
T ss_pred             CCEEEEEcCCCCCcCcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCccccccc------------------c-------
Confidence            357899997764      4444    667777774     99999988654110                  0       


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533           73 SYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        73 ~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                        +.+   .++.+.+.+..++.++..  +++++|++++.+    ...+.....++...+..+ +.+|.+++|+|.
T Consensus       205 --~~~---~~~~~~~~~~l~~~gI~~--~~~~~v~~v~~~----~v~~~~~~~~g~~~~~~~-i~~D~vv~~~g~  267 (437)
T 3sx6_A          205 --QGV---GDSKGILTKGLKEEGIEA--YTNCKVTKVEDN----KMYVTQVDEKGETIKEMV-LPVKFGMMIPAF  267 (437)
T ss_dssp             --TCC---TTHHHHHHHHHHHTTCEE--ECSEEEEEEETT----EEEEEEECTTSCEEEEEE-EECSEEEEECCE
T ss_pred             --Ccc---hHHHHHHHHHHHHCCCEE--EcCCEEEEEECC----eEEEEecccCCccccceE-EEEeEEEEcCCC
Confidence              011   134567777888888665  999999988642    233332211110001267 899999999984

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=97.39  E-value=0.00021  Score=63.23  Aligned_cols=33  Identities=24%  Similarity=0.401  Sum_probs=29.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ..+|+|||+|.+|+.+|..|.+.+ +++++.+.+
T Consensus       163 ~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~  195 (357)
T 4a9w_A          163 GMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHE  195 (357)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSC
T ss_pred             CCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCC
Confidence            468999999999999999999998 699998874

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.33  E-value=0.00082  Score=65.31  Aligned_cols=29  Identities=31%  Similarity=0.396  Sum_probs=25.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEE
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVI   35 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v   35 (325)
                      ..+|+|||+|..|+.+|..|++.|.++++
T Consensus       494 ~~~VvVIGgG~~g~E~A~~l~~~G~~vtv  522 (671)
T 1ps9_A          494 GNKVAIIGCGGIGFDTAMYLSQPGESTSQ  522 (671)
T ss_dssp             CSEEEEECCHHHHHHHHHHHTCCSSCGGG
T ss_pred             CCeEEEECCChhHHHHHHHHHhcCCCccc
Confidence            46899999999999999999999876653

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=97.31  E-value=0.00011  Score=69.41  Aligned_cols=35  Identities=37%  Similarity=0.482  Sum_probs=32.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY   42 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~   42 (325)
                      .+|++|||||.+|+.+|.+|++ |.+|+|+|+.+..
T Consensus        26 ~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~~   60 (536)
T 1ju2_A           26 SYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSLP   60 (536)
T ss_dssp             EEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBCG
T ss_pred             cccEEEECccHHHHHHHHHHhc-CCcEEEEecCCCc
Confidence            5899999999999999999999 9999999998654

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=97.29  E-value=0.0002  Score=67.11  Aligned_cols=38  Identities=18%  Similarity=0.306  Sum_probs=34.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA   43 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~G   43 (325)
                      ..+|++|||+|++|+.+|..|.+.|.+|+|+|+....+
T Consensus         4 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~   41 (504)
T 1n4w_A            4 GYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWN   41 (504)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence            35899999999999999999999999999999987544

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=97.29  E-value=0.00018  Score=68.55  Aligned_cols=36  Identities=25%  Similarity=0.411  Sum_probs=33.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcC-CCeEEEecCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQS-IPYVILERENC   41 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g-~~v~v~e~~~~   41 (325)
                      ..+|++|||||.+|+.+|.+|++.+ .+|+|+|+.+.
T Consensus         5 ~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             CEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            4589999999999999999999997 69999999876

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.24  E-value=0.00035  Score=54.48  Aligned_cols=41  Identities=17%  Similarity=0.307  Sum_probs=33.7

Q ss_pred             CCCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         1 M~~~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      |+......+|+|||+|..|..+|..|.+.|.+|+++|+++.
T Consensus        13 ~~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~   53 (155)
T 2g1u_A           13 MSKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY   53 (155)
T ss_dssp             ----CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             hhcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            44455567899999999999999999999999999998763

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.18  E-value=0.0019  Score=63.31  Aligned_cols=104  Identities=10%  Similarity=0.000  Sum_probs=67.8

Q ss_pred             CCeEEEEC--CChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHH
Q 020533            7 GVEVIMVG--AGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI   84 (325)
Q Consensus         7 ~~~v~IIG--aG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (325)
                      ..+|+|||  +|..|+.+|..|++.|.+|+++++.+ +...-                             .+..  . .
T Consensus       528 gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~~~~-----------------------------~~~~--~-~  574 (729)
T 1o94_A          528 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LANYM-----------------------------HFTL--E-Y  574 (729)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TTHHH-----------------------------HHTT--C-H
T ss_pred             CCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc-ccccc-----------------------------cccc--c-H
Confidence            46899999  99999999999999999999999987 43100                             0000  0 2


Q ss_pred             HHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCC--------------CceeEEEEEeCeEEEcccCCCC
Q 020533           85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSP--------------GREIEEYYSGRFLVVASGETTN  150 (325)
Q Consensus        85 ~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~--------------~~~~~~~~~ad~vIiAtG~~~~  150 (325)
                      .++.+.+++.++..  ++++++++++.+    ...+.....+++              +.+..+ +.+|.||+|+|  ..
T Consensus       575 ~~~~~~l~~~GV~i--~~~~~v~~i~~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~aD~Vv~a~G--~~  645 (729)
T 1o94_A          575 PNMMRRLHELHVEE--LGDHFCSRIEPG----RMEIYNIWGDGSKRTYRGPGVSPRDANTSHRW-IEFDSLVLVTG--RH  645 (729)
T ss_dssp             HHHHHHHHHTTCEE--ECSEEEEEEETT----EEEEEETTCSCSCCCCCCTTSCSSCCCCCCEE-EECSEEEEESC--EE
T ss_pred             HHHHHHHHhCCCEE--EcCcEEEEEECC----eEEEEEecCCceEEecccccccccccCCccee-eeCCEEEECCC--CC
Confidence            34555566677654  999999988632    233332111100              001256 89999999999  44


Q ss_pred             CC
Q 020533          151 PF  152 (325)
Q Consensus       151 p~  152 (325)
                      |+
T Consensus       646 p~  647 (729)
T 1o94_A          646 SE  647 (729)
T ss_dssp             EC
T ss_pred             CC
Confidence            44

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=97.17  E-value=0.00026  Score=67.36  Aligned_cols=35  Identities=34%  Similarity=0.562  Sum_probs=32.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhc-CCCeEEEecCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQ-SIPYVILEREN   40 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~-g~~v~v~e~~~   40 (325)
                      ..+|++|||||.+|+.+|.+|++. +.+|+|+|+.+
T Consensus        18 ~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~   53 (583)
T 3qvp_A           18 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   53 (583)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred             CCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            358999999999999999999975 78999999987

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=97.14  E-value=0.00073  Score=61.95  Aligned_cols=36  Identities=33%  Similarity=0.530  Sum_probs=31.9

Q ss_pred             CeEEEECcCCCHHHHHHHHhhcc--CeEEEEEecCCee
Q 020533          187 KNVLVVGSGNSGMEIALDLANHA--AKTSLVVRSPVHV  222 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~~--~~v~~~~r~~~~~  222 (325)
                      |+|+|||+|..|+.+|..|.+.+  .+||++.+++.+.
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~   40 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFG   40 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEE
T ss_pred             CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCc
Confidence            68999999999999999999876  5799999998544

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=97.14  E-value=0.00035  Score=65.56  Aligned_cols=36  Identities=28%  Similarity=0.434  Sum_probs=33.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      ..+|++|||+|++|+.+|.+|.+.|.+|+|+|+...
T Consensus        10 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~   45 (507)
T 1coy_A           10 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS   45 (507)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCC
Confidence            358999999999999999999999999999998764

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.07  E-value=0.0039  Score=63.50  Aligned_cols=34  Identities=21%  Similarity=0.249  Sum_probs=31.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~   40 (325)
                      ..+|+|||||..|+-+|..|.+.|. +|+++++.+
T Consensus       332 ~~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~  366 (1025)
T 1gte_A          332 RGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG  366 (1025)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCcEEEECCChHHHHHHHHHHHcCCCEEEEEEecC
Confidence            3589999999999999999999997 899999876

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=96.99  E-value=0.00061  Score=65.07  Aligned_cols=36  Identities=28%  Similarity=0.438  Sum_probs=32.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHh-cCCCeEEEecCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSL-QSIPYVILERENC   41 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~-~g~~v~v~e~~~~   41 (325)
                      ..+|++|||+|++|+.+|.+|.+ .|.+|+|+|+...
T Consensus        23 ~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~   59 (587)
T 1gpe_A           23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY   59 (587)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCc
Confidence            35899999999999999999999 7999999998754

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=96.97  E-value=0.00032  Score=66.58  Aligned_cols=36  Identities=28%  Similarity=0.418  Sum_probs=32.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHh-cCCCeEEEecCCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSL-QSIPYVILERENCY   42 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~-~g~~v~v~e~~~~~   42 (325)
                      .+|++|||||.+|+.+|.+|++ .+.+|+|+|+.+..
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~   38 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSD   38 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCC
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcc
Confidence            4899999999999999999998 68999999987644

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=96.88  E-value=0.00067  Score=64.25  Aligned_cols=36  Identities=31%  Similarity=0.412  Sum_probs=33.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhc-CCCeEEEecCCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQ-SIPYVILERENCY   42 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~-g~~v~v~e~~~~~   42 (325)
                      .+|++|||+|++|+.+|.+|++. |.+|+++|+....
T Consensus        13 ~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~   49 (546)
T 2jbv_A           13 EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDD   49 (546)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCC
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcC
Confidence            58999999999999999999998 8999999998644

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=96.84  E-value=0.0022  Score=58.02  Aligned_cols=38  Identities=24%  Similarity=0.363  Sum_probs=32.6

Q ss_pred             CCCeEEEECcCCCHHHHHHHHhhcc--CeEEEEEecCCee
Q 020533          185 GGKNVLVVGSGNSGMEIALDLANHA--AKTSLVVRSPVHV  222 (325)
Q Consensus       185 ~~~~v~VvG~G~s~~e~a~~l~~~~--~~v~~~~r~~~~~  222 (325)
                      .||+|+|||+|..|+.+|..|.+.+  .+|+++.+++.+.
T Consensus         1 aGKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~   40 (401)
T 3vrd_B            1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYY   40 (401)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEE
T ss_pred             CcCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCC
Confidence            4899999999999999999998876  4799999988544

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=96.72  E-value=0.0041  Score=56.39  Aligned_cols=52  Identities=4%  Similarity=-0.037  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCC
Q 020533           81 AQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET  148 (325)
Q Consensus        81 ~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~  148 (325)
                      .++.+.+.+.+++.++..  +++++|++++.+    .  |++.++       .+ +.+|.||+|+|..
T Consensus       218 ~~~~~~~~~~l~~~gV~~--~~~~~v~~i~~~----~--v~~~~g-------~~-~~~D~vi~a~G~~  269 (409)
T 3h8l_A          218 PNSRKAVASIYNQLGIKL--VHNFKIKEIREH----E--IVDEKG-------NT-IPADITILLPPYT  269 (409)
T ss_dssp             HHHHHHHHHHHHHHTCEE--ECSCCEEEECSS----E--EEETTS-------CE-EECSEEEEECCEE
T ss_pred             HHHHHHHHHHHHHCCCEE--EcCCceEEECCC----e--EEECCC-------CE-EeeeEEEECCCCC
Confidence            467788888888888665  899999988642    1  666553       56 8999999999953

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=96.62  E-value=0.023  Score=53.09  Aligned_cols=36  Identities=14%  Similarity=0.230  Sum_probs=30.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENC   41 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~~   41 (325)
                      ..++|+|||+|.||.-++..|++.  +.+|+++-|++.
T Consensus       245 ~gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~~  282 (501)
T 4b63_A          245 KPYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDSA  282 (501)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSSS
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence            357899999999999999999875  678999988763

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.57  E-value=0.0039  Score=47.53  Aligned_cols=34  Identities=26%  Similarity=0.403  Sum_probs=32.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      +.+|+|||+|..|..+|..|.+.|++|+++|+++
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~   40 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR   40 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            4579999999999999999999999999999986

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.48  E-value=0.0032  Score=47.54  Aligned_cols=34  Identities=26%  Similarity=0.480  Sum_probs=31.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      .++|+|||+|..|..+|..|.+.|.+|+++|+++
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            3589999999999999999999999999999875

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=96.47  E-value=0.002  Score=51.21  Aligned_cols=32  Identities=38%  Similarity=0.483  Sum_probs=30.9

Q ss_pred             eEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      +|+|||+|.+|+++|..|++.|.+|+++.+++
T Consensus         3 ~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~   34 (180)
T 2ywl_A            3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGR   34 (180)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            69999999999999999999999999999987

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.37  E-value=0.0047  Score=46.92  Aligned_cols=34  Identities=15%  Similarity=0.312  Sum_probs=31.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ..+|+|+|+|..|..+|..|.+.|++|+++|+++
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            3579999999999999999999999999999876

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=96.36  E-value=0.0036  Score=45.70  Aligned_cols=34  Identities=26%  Similarity=0.334  Sum_probs=31.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcC-CCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQS-IPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g-~~v~v~e~~~   40 (325)
                      ..+|+|+|+|..|..++..|.+.| ++++++++++
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            358999999999999999999999 8999999875

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=96.28  E-value=0.0035  Score=54.80  Aligned_cols=39  Identities=23%  Similarity=0.309  Sum_probs=31.4

Q ss_pred             CCCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         1 M~~~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      |+.+. ..+|+|||||..|...|..++..|++|+++|.++
T Consensus         1 Ma~p~-~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~   39 (319)
T 3ado_A            1 MASPA-AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP   39 (319)
T ss_dssp             -------CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CCCCC-CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence            55443 3589999999999999999999999999999876

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.24  E-value=0.0068  Score=46.84  Aligned_cols=33  Identities=12%  Similarity=0.121  Sum_probs=31.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      .+|+|+|+|..|...+..|.+.|++|+++|+++
T Consensus         4 ~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~   36 (153)
T 1id1_A            4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            479999999999999999999999999999974

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=95.96  E-value=0.0091  Score=45.15  Aligned_cols=33  Identities=12%  Similarity=0.149  Sum_probs=30.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      .+|+|+|+|..|..++..|.+.|.+|+++|+++
T Consensus         7 ~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            7 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            469999999999999999999999999999875

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.91  E-value=0.011  Score=47.04  Aligned_cols=34  Identities=18%  Similarity=0.225  Sum_probs=31.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhc-CCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQ-SIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~-g~~v~v~e~~~   40 (325)
                      ..+|+|||+|..|..+|..|.+. |++|+++|+++
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            35799999999999999999999 99999999986

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=95.90  E-value=0.0077  Score=52.32  Aligned_cols=40  Identities=18%  Similarity=0.173  Sum_probs=32.1

Q ss_pred             CCCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         1 M~~~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      |+......+|.|||+|..|..+|..|.+.|++|+++|+++
T Consensus         1 M~~~~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   40 (303)
T 3g0o_A            1 MSLTGTDFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP   40 (303)
T ss_dssp             ------CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCCCCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            5444445789999999999999999999999999999875

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=95.87  E-value=0.0044  Score=51.83  Aligned_cols=32  Identities=22%  Similarity=0.410  Sum_probs=30.5

Q ss_pred             eEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .|+|||+|.+|.-+|..|++.|.+|+++.+++
T Consensus         4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~   35 (336)
T 3kkj_A            4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSR   35 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            59999999999999999999999999999876

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=95.77  E-value=0.055  Score=46.64  Aligned_cols=35  Identities=17%  Similarity=0.114  Sum_probs=27.1

Q ss_pred             CCeEEEECCCh-HHHHHHHHHHhcCCCeEEEecCCC
Q 020533            7 GVEVIMVGAGT-SGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGaG~-~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      ..+++|||+|. +++.+|..+.+.+.+++++++.+.
T Consensus       146 ~~~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~~  181 (304)
T 4fk1_A          146 DQPLIIISENEDHTLHMTKLVYNWSTDLVIATNGNE  181 (304)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHTTTCSCEEEECSSCC
T ss_pred             CCceeeecCCCchhhhHHHHHHhCCceEEEEecccc
Confidence            35678888775 567888888888999999977653

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=95.71  E-value=0.014  Score=50.77  Aligned_cols=36  Identities=25%  Similarity=0.293  Sum_probs=32.8

Q ss_pred             CCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         5 ~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ....+|.|||.|..|..+|..|.+.|++|+++|+++
T Consensus         7 ~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~   42 (306)
T 3l6d_A            7 SFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSP   42 (306)
T ss_dssp             CCSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            345689999999999999999999999999999876

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=95.50  E-value=0.013  Score=48.11  Aligned_cols=32  Identities=22%  Similarity=0.387  Sum_probs=30.6

Q ss_pred             eEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      +|+|||+|..|..+|..|.+.|++|+++|+++
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~   33 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDR   33 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            69999999999999999999999999999886

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=95.47  E-value=0.014  Score=53.64  Aligned_cols=35  Identities=20%  Similarity=0.229  Sum_probs=32.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ..++|+|||.|.+|+++|..|.++|++|+++|+++
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            35789999999999999999999999999999865

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=95.46  E-value=0.017  Score=50.91  Aligned_cols=34  Identities=21%  Similarity=0.310  Sum_probs=31.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~   40 (325)
                      +.+|+|||||..|..+|..|+..|+ +++++|+++
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~   43 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   43 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence            4689999999999999999999998 999999876

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=95.42  E-value=0.016  Score=52.19  Aligned_cols=35  Identities=17%  Similarity=0.259  Sum_probs=32.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      ..+|+|||+|..|+.+|..|...|.+|+++|+++.
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  224 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPA  224 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTT
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            46899999999999999999999999999999874

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=95.38  E-value=0.018  Score=50.82  Aligned_cols=40  Identities=18%  Similarity=0.145  Sum_probs=33.3

Q ss_pred             CCCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         1 M~~~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      |+..+...+|.|||.|..|-++|..|.+.|++|+++|+++
T Consensus         2 m~~~~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~   41 (341)
T 3ktd_A            2 MTTKDISRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSR   41 (341)
T ss_dssp             ----CCSSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CCccCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            6555556789999999999999999999999999999876

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=95.31  E-value=0.007  Score=56.34  Aligned_cols=33  Identities=24%  Similarity=0.409  Sum_probs=30.5

Q ss_pred             CeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      |+|+|||+|.+|+-+|..|++.|.+|+++++++
T Consensus         2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~   34 (501)
T 4dgk_A            2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRD   34 (501)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC-
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCC
Confidence            689999999999999999999999999998864

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=95.30  E-value=0.01  Score=49.27  Aligned_cols=33  Identities=39%  Similarity=0.532  Sum_probs=30.8

Q ss_pred             CeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .+|+|||+|.+|+++|..|++.|.+|+++.+.+
T Consensus         4 ~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~   36 (232)
T 2cul_A            4 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSL   36 (232)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            479999999999999999999999999999973

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=95.29  E-value=0.02  Score=49.19  Aligned_cols=33  Identities=15%  Similarity=0.251  Sum_probs=31.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      .+|+|||+|..|...|..|++.|++|+++|+++
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT   37 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            579999999999999999999999999999876

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=95.27  E-value=0.015  Score=53.40  Aligned_cols=36  Identities=17%  Similarity=0.390  Sum_probs=32.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY   42 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~   42 (325)
                      .++|+|||.|.+|+++|+.|.++|++|+++|.+...
T Consensus         5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~   40 (439)
T 2x5o_A            5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (439)
T ss_dssp             TCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSC
T ss_pred             CCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCc
Confidence            457999999999999999999999999999987654

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=95.24  E-value=0.023  Score=46.87  Aligned_cols=35  Identities=17%  Similarity=0.250  Sum_probs=31.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ..++|+|||||..|...+..|.+.|.+|+|+++..
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~   64 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTV   64 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            35689999999999999999999999999998754

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=95.24  E-value=0.021  Score=49.43  Aligned_cols=33  Identities=18%  Similarity=0.341  Sum_probs=31.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      .+|+|||+|..|...|..|++.|++|+++|+++
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   48 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   48 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            579999999999999999999999999999875

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=95.22  E-value=0.018  Score=52.50  Aligned_cols=35  Identities=17%  Similarity=0.282  Sum_probs=31.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      ...+|+|||+|..|+.+|..|++ |++|+++|+++.
T Consensus        35 ~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~   69 (432)
T 3pid_A           35 EFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQA   69 (432)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHH
Confidence            44689999999999999999998 999999998763

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=95.16  E-value=0.017  Score=49.88  Aligned_cols=35  Identities=11%  Similarity=0.090  Sum_probs=32.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      ..+|.|||.|..|..+|..|.+.|++|+++|+++.
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   49 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE   49 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            35899999999999999999999999999999874

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=95.15  E-value=0.017  Score=51.51  Aligned_cols=36  Identities=14%  Similarity=0.147  Sum_probs=32.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      ...+|+|||+|..|+.+|+.|...|.+|+++|+++.
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  218 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPE  218 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGG
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            346899999999999999999999999999998863

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=95.14  E-value=0.018  Score=54.35  Aligned_cols=35  Identities=17%  Similarity=0.325  Sum_probs=33.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      .++|+|||+|.+|+.+|..|++.+.+|++|++.+.
T Consensus       185 ~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~  219 (545)
T 3uox_A          185 GKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPN  219 (545)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCC
T ss_pred             CCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCC
Confidence            46899999999999999999999999999999985

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=95.11  E-value=0.021  Score=50.01  Aligned_cols=35  Identities=23%  Similarity=0.408  Sum_probs=30.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCC--CeEEEecCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSI--PYVILEREN   40 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~--~v~v~e~~~   40 (325)
                      .+.+|+|||+|..|..+|..|...+.  +++++|.+.
T Consensus         6 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~   42 (318)
T 1y6j_A            6 SRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   42 (318)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            34689999999999999999999987  899999875

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=95.10  E-value=0.019  Score=44.39  Aligned_cols=40  Identities=20%  Similarity=0.222  Sum_probs=33.4

Q ss_pred             CCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          180 NGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       180 ~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .+....+++|+|+|+|..|..++..|...|.+|+++.|++
T Consensus        13 ~~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~   52 (155)
T 2g1u_A           13 MSKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNE   52 (155)
T ss_dssp             ----CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             hhcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            3456678899999999999999999999999999998876

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=95.06  E-value=0.026  Score=46.09  Aligned_cols=35  Identities=17%  Similarity=0.327  Sum_probs=31.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      ..+|.|||+|..|.+.|..|.+.|++|+++++++.
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            46899999999999999999999999999998764

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=95.02  E-value=0.02  Score=54.13  Aligned_cols=35  Identities=23%  Similarity=0.451  Sum_probs=33.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      .++|+|||+|.+|+.+|..|++.+.+|++|+|.+.
T Consensus       191 ~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  225 (549)
T 4ap3_A          191 GKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSAN  225 (549)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            46899999999999999999999999999999985

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=95.02  E-value=0.019  Score=49.60  Aligned_cols=33  Identities=21%  Similarity=0.371  Sum_probs=31.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      +++|.|||+|..|...|..|+ .|++|+++|+++
T Consensus        12 ~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~   44 (293)
T 1zej_A           12 HMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE   44 (293)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence            578999999999999999999 999999999876

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=94.97  E-value=0.025  Score=48.46  Aligned_cols=33  Identities=18%  Similarity=0.111  Sum_probs=30.9

Q ss_pred             eEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            9 EVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      +|+|||+|..|...|..|.+.|++|+++++++.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~   34 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence            699999999999999999999999999998764

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=94.93  E-value=0.025  Score=49.46  Aligned_cols=33  Identities=18%  Similarity=0.363  Sum_probs=31.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      .+|+|||+|..|...|..|.+.|.+|++++|++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            579999999999999999999999999999875

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=94.91  E-value=0.02  Score=47.28  Aligned_cols=38  Identities=24%  Similarity=0.329  Sum_probs=34.0

Q ss_pred             CCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          182 KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       182 ~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .++.+++|+|||+|.+|...+..|.+.|.+|+++.+..
T Consensus        27 l~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~   64 (223)
T 3dfz_A           27 LDLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTV   64 (223)
T ss_dssp             ECCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSC
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            35678999999999999999999999999999987653

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=94.89  E-value=0.027  Score=48.98  Aligned_cols=35  Identities=23%  Similarity=0.231  Sum_probs=32.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      ..+|.|||+|..|..+|..|.+.|++|+++|+++.
T Consensus        21 m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   55 (310)
T 3doj_A           21 MMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLS   55 (310)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            46899999999999999999999999999998864

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=94.84  E-value=0.028  Score=49.07  Aligned_cols=34  Identities=15%  Similarity=0.300  Sum_probs=31.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~   40 (325)
                      ..+|+|||+|..|..+|..|++.|+ +|+++|+++
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~   38 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE   38 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence            3589999999999999999999998 999999875

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=94.82  E-value=0.026  Score=52.26  Aligned_cols=34  Identities=26%  Similarity=0.538  Sum_probs=31.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ..+|+|||+|..|+.+|..|++.|++|+++|+++
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~   41 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ   41 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            4689999999999999999999999999999865

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=94.79  E-value=0.033  Score=46.65  Aligned_cols=35  Identities=26%  Similarity=0.359  Sum_probs=32.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      .++|.|||+|..|.++|..|.+.|++|+++++++.
T Consensus        19 ~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~   53 (245)
T 3dtt_A           19 GMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPK   53 (245)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            57899999999999999999999999999998763

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=94.78  E-value=0.029  Score=48.96  Aligned_cols=34  Identities=21%  Similarity=0.319  Sum_probs=31.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC--CeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI--PYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~--~v~v~e~~~   40 (325)
                      ..+|+|||+|..|...|..|.+.|.  +|+++|++.
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            4689999999999999999999998  999999875

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=94.77  E-value=0.015  Score=44.41  Aligned_cols=34  Identities=21%  Similarity=0.331  Sum_probs=31.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ..+|+|||+|..|..++..|.+.|.++++++++.
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~   54 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI   54 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            4689999999999999999999999999999875

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=94.74  E-value=0.037  Score=50.78  Aligned_cols=34  Identities=32%  Similarity=0.545  Sum_probs=31.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      .+|+|||+|..|...|..|++.|++|+++|+++.
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   88 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ   88 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence            5799999999999999999999999999998863

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=94.72  E-value=0.017  Score=52.77  Aligned_cols=34  Identities=24%  Similarity=0.468  Sum_probs=31.6

Q ss_pred             CCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       186 ~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .++|+|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            4689999999999999999999999999999876

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=94.68  E-value=0.019  Score=51.55  Aligned_cols=32  Identities=28%  Similarity=0.471  Sum_probs=30.7

Q ss_pred             eEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      +|+|||+|.+|.-+|..|++.|.+|+++.|++
T Consensus         3 ~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~   34 (412)
T 4hb9_A            3 HVGIIGAGIGGTCLAHGLRKHGIKVTIYERNS   34 (412)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            79999999999999999999999999999976

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=94.67  E-value=0.026  Score=48.09  Aligned_cols=35  Identities=14%  Similarity=0.289  Sum_probs=32.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ..+.|+|||+|-.|...+..|.+.|.+|+|+++..
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            35789999999999999999999999999999764

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=94.66  E-value=0.031  Score=51.42  Aligned_cols=33  Identities=21%  Similarity=0.501  Sum_probs=31.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ++|+|||+|..|+.+|..|++.|++|+++|+++
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence            479999999999999999999999999999875

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=94.63  E-value=0.029  Score=48.86  Aligned_cols=33  Identities=30%  Similarity=0.385  Sum_probs=30.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ++|+|||+|..|.+.|..|.+.|.+|++++|++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            479999999999999999999999999999875

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=94.63  E-value=0.035  Score=50.90  Aligned_cols=35  Identities=29%  Similarity=0.527  Sum_probs=32.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      ..+++|||.|..|+.+|..|++.|++|+++|+++.
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~   42 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDAR   42 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            36899999999999999999999999999999874

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=94.61  E-value=0.033  Score=50.41  Aligned_cols=35  Identities=20%  Similarity=0.296  Sum_probs=32.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      ..+|+|||+|..|+.++..|...|.+|+++|+++.
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~  206 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPE  206 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            46899999999999999999999999999998763

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=94.54  E-value=0.044  Score=44.88  Aligned_cols=34  Identities=21%  Similarity=0.188  Sum_probs=30.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ..+|+|||+|..|...|..|.+.|++|++++++.
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~   61 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGFKVVVGSRNP   61 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4679999999999999999999999999999875

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=94.53  E-value=0.025  Score=48.52  Aligned_cols=33  Identities=24%  Similarity=0.593  Sum_probs=30.9

Q ss_pred             CeEEEECcCCCHHHHHHHHhhc-cCeEEEEEecC
Q 020533          187 KNVLVVGSGNSGMEIALDLANH-AAKTSLVVRSP  219 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~-~~~v~~~~r~~  219 (325)
                      .+|+|||+|.+|+.+|..|++. |.+|+++.+.+
T Consensus        40 ~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~   73 (284)
T 1rp0_A           40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV   73 (284)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSS
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            4799999999999999999997 99999999986

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=94.52  E-value=0.04  Score=48.50  Aligned_cols=32  Identities=31%  Similarity=0.396  Sum_probs=30.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERE   39 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~   39 (325)
                      .+|+|||+|..|...|..|.+.|.+|+++++.
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            57999999999999999999999999999985

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=94.51  E-value=0.035  Score=48.05  Aligned_cols=33  Identities=15%  Similarity=0.259  Sum_probs=30.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      .+|+|||+|..|...|..|.+.|++|+++++++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            479999999999999999999999999999865

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=94.49  E-value=0.037  Score=49.42  Aligned_cols=35  Identities=17%  Similarity=0.362  Sum_probs=32.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~   40 (325)
                      ...+|+|+|||.+|+.+|..|...|. +|+++|++.
T Consensus       187 ~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          187 DEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             CccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            34689999999999999999999999 999999984

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=94.49  E-value=0.021  Score=50.82  Aligned_cols=32  Identities=38%  Similarity=0.501  Sum_probs=30.6

Q ss_pred             eEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .|+|||+|.+|.-+|..|++.|.+|+++.|++
T Consensus         6 DViIVGaGpaGl~~A~~La~~G~~V~v~Er~~   37 (397)
T 3oz2_A            6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRP   37 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            59999999999999999999999999999976

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=94.49  E-value=0.036  Score=47.59  Aligned_cols=34  Identities=24%  Similarity=0.208  Sum_probs=31.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      ++|.|||+|..|..+|..|.+.|++|+++|+++.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPE   35 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            4799999999999999999999999999998864

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=94.49  E-value=0.044  Score=48.72  Aligned_cols=34  Identities=24%  Similarity=0.282  Sum_probs=31.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ..+|+|||+|.-|.+.|..|++.|++|+++++++
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~   62 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYES   62 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCH
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            3589999999999999999999999999999875

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=94.48  E-value=0.029  Score=47.83  Aligned_cols=37  Identities=24%  Similarity=0.399  Sum_probs=33.5

Q ss_pred             CCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       183 ~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      ++++++|+|||+|.+|...+..|.+.|.+|+++....
T Consensus        10 ~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           10 QLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             CCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             EcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            4578999999999999999999999999999987654

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=94.44  E-value=0.036  Score=48.48  Aligned_cols=34  Identities=21%  Similarity=0.354  Sum_probs=31.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ..+|.|||+|..|..+|..|.+.|++|+++|+++
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   64 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCEAGYALQVWNRTP   64 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCH
Confidence            4589999999999999999999999999999875

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=94.43  E-value=0.037  Score=47.72  Aligned_cols=33  Identities=21%  Similarity=0.310  Sum_probs=30.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      .+|+|||+|..|.+.|..|.+.|.+|++++|+.
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            479999999999999999999999999999874

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=94.43  E-value=0.042  Score=49.38  Aligned_cols=35  Identities=17%  Similarity=0.248  Sum_probs=32.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      ..+|+|||+|..|+.++..+...|.+|+++|+++.
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~  206 (384)
T 1l7d_A          172 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA  206 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            56899999999999999999999999999998763

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=94.40  E-value=0.036  Score=51.23  Aligned_cols=35  Identities=14%  Similarity=0.201  Sum_probs=32.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhc-CC-CeEEEecCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQ-SI-PYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~-g~-~v~v~e~~~~   41 (325)
                      ..+|+|||+|..|+.+|..|++. |+ +|+++|+++.
T Consensus        18 ~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            46899999999999999999999 99 9999999875

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=94.37  E-value=0.03  Score=50.52  Aligned_cols=35  Identities=20%  Similarity=0.377  Sum_probs=32.2

Q ss_pred             CCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       185 ~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      +..+|+|||+|.+|+-+|..|++.|.+|+++.|.+
T Consensus        22 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~   56 (407)
T 3rp8_A           22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVK   56 (407)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            45689999999999999999999999999999987

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=94.34  E-value=0.031  Score=52.11  Aligned_cols=36  Identities=33%  Similarity=0.466  Sum_probs=33.1

Q ss_pred             CCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533          185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       185 ~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                      ...+|+|||+|.+|+.+|..|++.|.+|+++.+.+.
T Consensus        91 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~  126 (497)
T 2bry_A           91 TNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIK  126 (497)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccc
Confidence            457899999999999999999999999999999863

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=94.33  E-value=0.049  Score=48.41  Aligned_cols=34  Identities=15%  Similarity=0.267  Sum_probs=31.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      ++|+|||||..|..+++.+.+.|++++++|.++.
T Consensus         2 K~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~   35 (363)
T 4ffl_A            2 KTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ   35 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            5799999999999999999999999999998764

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=94.31  E-value=0.048  Score=49.74  Aligned_cols=34  Identities=18%  Similarity=0.191  Sum_probs=31.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ..+|+|||.|..||.+|..|++.|++|+.||.++
T Consensus        21 m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~   54 (444)
T 3vtf_A           21 MASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNP   54 (444)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            4689999999999999999999999999999875

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=94.27  E-value=0.049  Score=47.81  Aligned_cols=35  Identities=17%  Similarity=0.279  Sum_probs=31.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~~   41 (325)
                      +.+|+|||||..|..+|..|+..|+ +|+++|.+..
T Consensus        14 ~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~   49 (328)
T 2hjr_A           14 RKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEG   49 (328)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHH
Confidence            3589999999999999999999998 9999998763

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=94.27  E-value=0.044  Score=48.82  Aligned_cols=35  Identities=23%  Similarity=0.378  Sum_probs=31.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~   40 (325)
                      ...+|+|+|||.+|..+|+.|...|. +++++|++.
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~G  226 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKG  226 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence            35689999999999999999999998 799999983

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=94.26  E-value=0.052  Score=47.52  Aligned_cols=33  Identities=18%  Similarity=0.403  Sum_probs=30.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCC-CeEEEecCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~   40 (325)
                      .+|+|||||..|..+|..|+..|+ +++++|.+.
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~   38 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   38 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence            589999999999999999999998 899999875

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=94.25  E-value=0.054  Score=46.81  Aligned_cols=41  Identities=17%  Similarity=0.239  Sum_probs=32.4

Q ss_pred             CCCCCCCCeEEEECC-ChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            1 MKEQAAGVEVIMVGA-GTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         1 M~~~~~~~~v~IIGa-G~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      |.....+++|+|.|| |..|..++..|.+.|++|++++|...
T Consensus         1 M~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   42 (321)
T 3vps_A            1 MQRNTLKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV   42 (321)
T ss_dssp             ------CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred             CCcccCCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            544344578999999 99999999999999999999998764

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=94.21  E-value=0.045  Score=48.39  Aligned_cols=33  Identities=24%  Similarity=0.337  Sum_probs=30.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      .+|+|||+|..|...|..|.+.|++|+++++++
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~   37 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   37 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            589999999999999999999999999999874

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=94.20  E-value=0.024  Score=52.28  Aligned_cols=34  Identities=24%  Similarity=0.420  Sum_probs=31.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      .++|+|+|+|-.|..+|..|...|++|+++|+++
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~   36 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDG   36 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCH
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            4689999999999999999999999999999875

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=94.13  E-value=0.049  Score=47.89  Aligned_cols=34  Identities=21%  Similarity=0.324  Sum_probs=31.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ..+|.|||+|..|..+|..|.+.|++|++++|++
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~   47 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARRK   47 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            3689999999999999999999999999999864

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=94.13  E-value=0.039  Score=47.37  Aligned_cols=34  Identities=21%  Similarity=0.211  Sum_probs=31.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      .+|.|||.|..|..+|..|.+.|++|+++|+++.
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPA   35 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            3699999999999999999999999999998864

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=94.10  E-value=0.054  Score=49.95  Aligned_cols=33  Identities=27%  Similarity=0.338  Sum_probs=31.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      .+|+|||+|..|...|..|++.|++|+++|+++
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~   70 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGISVVAVESDP   70 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            579999999999999999999999999999876

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=94.09  E-value=0.043  Score=46.44  Aligned_cols=34  Identities=18%  Similarity=0.334  Sum_probs=30.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCC-eEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIP-YVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~-v~v~e~~~   40 (325)
                      ..+|.|||+|..|...|..|.+.|++ |.++++++
T Consensus        10 ~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~   44 (266)
T 3d1l_A           10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTE   44 (266)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSH
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCH
Confidence            46899999999999999999999998 89999875

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=94.04  E-value=0.049  Score=49.46  Aligned_cols=34  Identities=29%  Similarity=0.490  Sum_probs=31.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      +..|+|||.|..|..+|..|.+.|++|+++|+++
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~   37 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDP   37 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            4579999999999999999999999999999875

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=94.03  E-value=0.057  Score=47.34  Aligned_cols=34  Identities=12%  Similarity=0.049  Sum_probs=30.6

Q ss_pred             CCeEEEECCChHHHH-HHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLA-TAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~-~a~~L~~~g~~v~v~e~~~   40 (325)
                      .++|.|||.|.+|++ +|..|.++|++|++.|+++
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~   38 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKM   38 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            358999999999996 7888999999999999876

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=93.97  E-value=0.044  Score=49.33  Aligned_cols=34  Identities=29%  Similarity=0.457  Sum_probs=32.0

Q ss_pred             CCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       186 ~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      ..+|+|||+|.+|+-+|..|++.|.+|+++.|.+
T Consensus        26 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~   59 (398)
T 2xdo_A           26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDN   59 (398)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4689999999999999999999999999999986

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=93.94  E-value=0.039  Score=49.62  Aligned_cols=35  Identities=31%  Similarity=0.433  Sum_probs=32.5

Q ss_pred             CCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       186 ~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                      ..+|+|||+|.+|+-+|..|++.|.+|+++.|.+.
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   39 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   39 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            46899999999999999999999999999999874

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=93.92  E-value=0.064  Score=47.73  Aligned_cols=34  Identities=18%  Similarity=0.202  Sum_probs=31.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ..+|+|+|+|..|+.++..|...|.+|+++|+++
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~  200 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV  200 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            3689999999999999999999999999999886

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=93.90  E-value=0.036  Score=49.81  Aligned_cols=38  Identities=29%  Similarity=0.346  Sum_probs=33.0

Q ss_pred             CeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeec
Q 020533          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLS  224 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p  224 (325)
                      ++|+|||+|..|+++|..+++.|.+|+++.+++...-|
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~~~tp   39 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKRMTP   39 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTSCCS
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCCcCCc
Confidence            47999999999999999999999999999988743333

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=93.88  E-value=0.046  Score=50.04  Aligned_cols=32  Identities=22%  Similarity=0.398  Sum_probs=30.3

Q ss_pred             eEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      +|+|||+|..|+.+|..|++.|++|+++|+++
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~   33 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            69999999999999999999999999999875

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=93.87  E-value=0.073  Score=46.25  Aligned_cols=34  Identities=15%  Similarity=0.151  Sum_probs=31.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      .+|.|||+|..|...|..|.+.|++|+++|+++.
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~   64 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAE   64 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGG
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            6799999999999999999999999999998753

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=93.85  E-value=0.036  Score=48.13  Aligned_cols=31  Identities=23%  Similarity=0.380  Sum_probs=29.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhc-----C-CCeEEEec
Q 020533            8 VEVIMVGAGTSGLATAACLSLQ-----S-IPYVILER   38 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~-----g-~~v~v~e~   38 (325)
                      .+|+|||+|..|...|..|.+.     | ++|++++|
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            5899999999999999999999     9 99999988

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=93.85  E-value=0.058  Score=46.78  Aligned_cols=32  Identities=31%  Similarity=0.497  Sum_probs=29.9

Q ss_pred             eEEEECCChHHHHHHHHHHhcCC--CeEEEecCC
Q 020533            9 EVIMVGAGTSGLATAACLSLQSI--PYVILEREN   40 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~--~v~v~e~~~   40 (325)
                      +|+|||+|..|...|..|+..|+  +++++|++.
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE   35 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            69999999999999999999998  899999875

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=93.85  E-value=0.037  Score=50.13  Aligned_cols=33  Identities=24%  Similarity=0.337  Sum_probs=30.5

Q ss_pred             CeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      ++|+|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~   33 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSA   33 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            479999999999999999999999999999863

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=93.84  E-value=0.055  Score=45.49  Aligned_cols=34  Identities=24%  Similarity=0.430  Sum_probs=31.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~   40 (325)
                      ..+|+|||+|-.|..+|..|.+.|+ +++|+|+..
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            3589999999999999999999998 899999875

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=93.83  E-value=0.04  Score=49.19  Aligned_cols=35  Identities=23%  Similarity=0.324  Sum_probs=32.3

Q ss_pred             CCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       186 ~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                      ..+|+|||+|.+|+.+|..|++.|.+|+++.|.+.
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~   45 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSE   45 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            46899999999999999999999999999999863

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=93.79  E-value=0.027  Score=46.70  Aligned_cols=35  Identities=26%  Similarity=0.327  Sum_probs=30.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      ....|+|+|+|..|..+|..|.+.|+ |+++|+++.
T Consensus         8 ~~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~   42 (234)
T 2aef_A            8 KSRHVVICGWSESTLECLRELRGSEV-FVLAEDENV   42 (234)
T ss_dssp             --CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGG
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHH
Confidence            34689999999999999999999999 999998763

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=93.77  E-value=0.052  Score=50.37  Aligned_cols=33  Identities=27%  Similarity=0.430  Sum_probs=30.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhc--CCCeEEEecCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQ--SIPYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~   40 (325)
                      .+|+|||+|..|+.+|..|++.  |++|+++|+++
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~   44 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNT   44 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            5899999999999999999998  78999999865

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=93.74  E-value=0.065  Score=47.61  Aligned_cols=34  Identities=18%  Similarity=0.252  Sum_probs=31.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ..+|.|||.|..|..+|..|.+.|++|+++|+++
T Consensus        22 ~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~   55 (358)
T 4e21_A           22 SMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNV   55 (358)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            3689999999999999999999999999999875

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=93.66  E-value=0.036  Score=49.34  Aligned_cols=33  Identities=30%  Similarity=0.393  Sum_probs=31.0

Q ss_pred             CeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .+|+|||+|.+|+-+|..|++.|.+|+++.+..
T Consensus        18 ~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~   50 (382)
T 1ryi_A           18 YEAVVIGGGIIGSAIAYYLAKENKNTALFESGT   50 (382)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            589999999999999999999999999999874

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=93.65  E-value=0.077  Score=46.24  Aligned_cols=34  Identities=26%  Similarity=0.408  Sum_probs=31.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~   40 (325)
                      ..+|+|||+|..|..+|..|+..|+ +++++|.++
T Consensus         8 ~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~   42 (315)
T 3tl2_A            8 RKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQ   42 (315)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccc
Confidence            4589999999999999999999999 999999873

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=93.63  E-value=0.04  Score=49.88  Aligned_cols=33  Identities=24%  Similarity=0.420  Sum_probs=30.5

Q ss_pred             CeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      ++|+|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~   33 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLP   33 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCC
Confidence            379999999999999999999999999999864

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=93.61  E-value=0.07  Score=49.43  Aligned_cols=33  Identities=18%  Similarity=0.300  Sum_probs=31.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      .+|.|||+|..|...|..|++.|++|+++|+++
T Consensus         6 ~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~   38 (483)
T 3mog_A            6 QTVAVIGSGTMGAGIAEVAASHGHQVLLYDISA   38 (483)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            479999999999999999999999999999886

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=93.57  E-value=0.048  Score=48.94  Aligned_cols=33  Identities=27%  Similarity=0.481  Sum_probs=30.9

Q ss_pred             CeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus         5 ~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~   37 (397)
T 2oln_A            5 YDVVVVGGGPVGLATAWQVAERGHRVLVLERHT   37 (397)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            379999999999999999999999999999875

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=93.57  E-value=0.08  Score=47.40  Aligned_cols=34  Identities=24%  Similarity=0.370  Sum_probs=31.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ..+|+|||+|..|..+|..+...|.+|+++|+++
T Consensus       168 g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~  201 (377)
T 2vhw_A          168 PADVVVIGAGTAGYNAARIANGMGATVTVLDINI  201 (377)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            5689999999999999999999999999999876

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=93.56  E-value=0.04  Score=50.09  Aligned_cols=34  Identities=18%  Similarity=0.479  Sum_probs=31.4

Q ss_pred             CCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       186 ~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      ..+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus        27 ~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~   60 (417)
T 3v76_A           27 KQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHAR   60 (417)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            3579999999999999999999999999999987

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=93.55  E-value=0.081  Score=47.21  Aligned_cols=34  Identities=24%  Similarity=0.311  Sum_probs=31.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ...|+|+|+|..|..+|..|...|.+|+++|+++
T Consensus       166 ~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          166 PASVVILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            4689999999999999999999999999999876

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=93.53  E-value=0.08  Score=42.97  Aligned_cols=32  Identities=25%  Similarity=0.314  Sum_probs=30.0

Q ss_pred             eEEEEC-CChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            9 EVIMVG-AGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         9 ~v~IIG-aG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      +|+||| +|..|...|..|.+.|++|++++|++
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~   34 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            699999 99999999999999999999999875

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=93.51  E-value=0.062  Score=46.75  Aligned_cols=33  Identities=15%  Similarity=0.214  Sum_probs=30.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERE   39 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~   39 (325)
                      ..+|.|||.|..|..+|..|.+.|+ +|+++|++
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~   57 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA   57 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence            4689999999999999999999999 99999996

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=93.50  E-value=0.06  Score=49.73  Aligned_cols=33  Identities=18%  Similarity=0.341  Sum_probs=30.7

Q ss_pred             CeEEEECCChHHHHHHHHHHhc--CCCeEEEecCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQ--SIPYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~   40 (325)
                      .+|+|||+|..|+.+|..|++.  |++|+++|+++
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~   40 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNE   40 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            5899999999999999999999  79999999875

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=93.49  E-value=0.043  Score=50.92  Aligned_cols=34  Identities=29%  Similarity=0.467  Sum_probs=31.4

Q ss_pred             CCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       186 ~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .++|+|||+|.+|+.+|..|++.|.+|+++.+++
T Consensus        33 ~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~   66 (498)
T 2iid_A           33 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE   66 (498)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCC
Confidence            5789999999999999999999999999998764

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=93.47  E-value=0.078  Score=46.42  Aligned_cols=34  Identities=29%  Similarity=0.378  Sum_probs=30.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC--CeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI--PYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~--~v~v~e~~~   40 (325)
                      ..+|+|||+|..|.++|..|+..|+  +++++|.+.
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~   40 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVNK   40 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecch
Confidence            4689999999999999999999987  899999864

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=93.47  E-value=0.053  Score=46.87  Aligned_cols=34  Identities=21%  Similarity=0.305  Sum_probs=28.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      .+|.+||-|..|..+|.+|.+.|++|+++|+++.
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~   39 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTAS   39 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC-----
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            4799999999999999999999999999998764

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=93.45  E-value=0.076  Score=46.08  Aligned_cols=32  Identities=25%  Similarity=0.411  Sum_probs=30.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      .+|+|||+|..|...|..|. .|.+|++++|++
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~   34 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ   34 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence            57999999999999999999 999999999875

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=93.44  E-value=0.046  Score=48.20  Aligned_cols=33  Identities=24%  Similarity=0.378  Sum_probs=31.0

Q ss_pred             CeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus         5 ~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~   37 (369)
T 3dme_A            5 IDCIVIGAGVVGLAIARALAAGGHEVLVAEAAE   37 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            479999999999999999999999999999974

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=93.43  E-value=0.072  Score=46.15  Aligned_cols=34  Identities=26%  Similarity=0.457  Sum_probs=30.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC--CeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI--PYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~--~v~v~e~~~   40 (325)
                      ..+|+|||||..|...|..|+..|+  +++++|.+.
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~   49 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSE   49 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence            4689999999999999999999998  899999875

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=93.42  E-value=0.063  Score=46.83  Aligned_cols=33  Identities=12%  Similarity=0.173  Sum_probs=31.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhcC-CCeEEEecCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQS-IPYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g-~~v~v~e~~~   40 (325)
                      .+|.|||+|..|..+|..|.+.| ++|+++|+++
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            57999999999999999999999 9999999885

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=93.42  E-value=0.095  Score=44.85  Aligned_cols=33  Identities=18%  Similarity=0.202  Sum_probs=30.9

Q ss_pred             CeEEEECC-ChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            8 VEVIMVGA-GTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGa-G~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      .+|.|||+ |..|...|..|.+.|++|+++++++
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~   45 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAP   45 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            58999999 9999999999999999999999875

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=93.41  E-value=0.078  Score=46.25  Aligned_cols=33  Identities=21%  Similarity=0.398  Sum_probs=29.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ..+|+|||+|..|.+.|..|++.|.+|+++ +++
T Consensus        19 ~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~   51 (318)
T 3hwr_A           19 GMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARP   51 (318)
T ss_dssp             -CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCH
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcH
Confidence            468999999999999999999999999999 654

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=93.38  E-value=0.092  Score=44.59  Aligned_cols=35  Identities=29%  Similarity=0.343  Sum_probs=31.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      .++++|||+|-+|-+++..|.+.|.+++|+.|+..
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~  152 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSR  152 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            46899999999999999999999999999988763

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=93.37  E-value=0.047  Score=48.79  Aligned_cols=34  Identities=24%  Similarity=0.400  Sum_probs=31.2

Q ss_pred             CeEEEECcCCCHHHHHHHHhhc--cCeEEEEEecCC
Q 020533          187 KNVLVVGSGNSGMEIALDLANH--AAKTSLVVRSPV  220 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~--~~~v~~~~r~~~  220 (325)
                      ++|+|||+|.+|+-+|..|++.  |.+|+++.|.+.
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~   36 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDE   36 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCC
Confidence            3799999999999999999999  999999999763

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=93.35  E-value=0.066  Score=48.42  Aligned_cols=31  Identities=26%  Similarity=0.372  Sum_probs=29.2

Q ss_pred             eEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      +|+|||+|..|+.+|..|++ |++|+++|+++
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~   32 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILP   32 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHhC-CCEEEEEECCH
Confidence            69999999999999999999 99999999875

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=93.30  E-value=0.092  Score=44.67  Aligned_cols=34  Identities=21%  Similarity=0.317  Sum_probs=31.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      .+.++|+|+|-.|.++|..|.+.|.+|++++|+.
T Consensus       119 ~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~  152 (271)
T 1nyt_A          119 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV  152 (271)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCH
Confidence            4689999999999999999999999999998875

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=93.30  E-value=0.11  Score=46.52  Aligned_cols=36  Identities=17%  Similarity=0.253  Sum_probs=32.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      ..++|+|||+|..|..++..+.+.|++++++|..+.
T Consensus        13 ~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~   48 (389)
T 3q2o_A           13 PGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKN   48 (389)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCC
Confidence            346899999999999999999999999999997654

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=93.29  E-value=0.086  Score=44.83  Aligned_cols=35  Identities=14%  Similarity=0.101  Sum_probs=32.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      .++|+|.|||..|..++..|.++|++|+++.|++.
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   39 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPD   39 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGG
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChh
Confidence            35899999999999999999999999999998763

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=93.29  E-value=0.068  Score=46.76  Aligned_cols=30  Identities=27%  Similarity=0.199  Sum_probs=29.0

Q ss_pred             eEEEECCChHHHHHHHHHHhcCCCeEEEec
Q 020533            9 EVIMVGAGTSGLATAACLSLQSIPYVILER   38 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~   38 (325)
                      +|+|||+|..|...|..|.+.|++|+++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            699999999999999999999999999998

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=93.29  E-value=0.072  Score=45.87  Aligned_cols=34  Identities=15%  Similarity=0.263  Sum_probs=31.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      +.+|.|||+|..|...|..|.+.|++|+++++++
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   37 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLME   37 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            3589999999999999999999999999999865

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=93.28  E-value=0.051  Score=49.11  Aligned_cols=33  Identities=27%  Similarity=0.392  Sum_probs=31.1

Q ss_pred             CeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus         6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~   38 (421)
T 3nix_A            6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQK   38 (421)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            479999999999999999999999999999985

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=93.25  E-value=0.051  Score=48.80  Aligned_cols=34  Identities=24%  Similarity=0.343  Sum_probs=31.6

Q ss_pred             CeEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                      .+|+|||+|.+|+-+|..|++.|.+|+++.|++.
T Consensus         7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~   40 (399)
T 2x3n_A            7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARR   40 (399)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence            4799999999999999999999999999999863

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=93.24  E-value=0.052  Score=44.64  Aligned_cols=33  Identities=30%  Similarity=0.433  Sum_probs=30.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEE-EecCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVI-LEREN   40 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v-~e~~~   40 (325)
                      .+|.|||+|..|.+.|..|.+.|++|++ +++++
T Consensus        24 mkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~   57 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERFTAAQIPAIIANSRGP   57 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCG
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCH
Confidence            5799999999999999999999999998 77765

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=93.20  E-value=0.081  Score=49.01  Aligned_cols=34  Identities=18%  Similarity=0.219  Sum_probs=31.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      +++|.|||+|..|..+|..|.+.|++|++++|++
T Consensus        15 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~   48 (480)
T 2zyd_A           15 KQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSR   48 (480)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             CCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            4579999999999999999999999999999875

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=93.19  E-value=0.12  Score=43.94  Aligned_cols=34  Identities=26%  Similarity=0.344  Sum_probs=31.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      ++|+|.|+|..|..++..|.+.|++|+++.|+..
T Consensus         4 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   37 (286)
T 3gpi_A            4 SKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQ   37 (286)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTS
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            4799999999999999999999999999998754

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=93.19  E-value=0.12  Score=46.93  Aligned_cols=35  Identities=20%  Similarity=0.229  Sum_probs=31.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ..++|+|||+|..|..++..+.+.|++++++|..+
T Consensus        34 ~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~   68 (419)
T 4e4t_A           34 PGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDP   68 (419)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            35689999999999999999999999999998765

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=93.19  E-value=0.093  Score=48.54  Aligned_cols=34  Identities=9%  Similarity=0.178  Sum_probs=31.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      +.+|.|||.|..|..+|..|.+.|++|+++|+++
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~   37 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   37 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3579999999999999999999999999999886

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=93.12  E-value=0.088  Score=45.20  Aligned_cols=32  Identities=25%  Similarity=0.311  Sum_probs=30.2

Q ss_pred             eEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      +|.|||+|..|...|..|.+.|++|+++++++
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~   33 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFP   33 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSST
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            59999999999999999999999999999875

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=93.12  E-value=0.11  Score=45.18  Aligned_cols=33  Identities=21%  Similarity=0.214  Sum_probs=31.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCC--CeEEEecCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSI--PYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~--~v~v~e~~~   40 (325)
                      .+|.|||+|..|.+.|..|.+.|+  +|+++|+++
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~   68 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   68 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence            589999999999999999999999  899999876

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=93.11  E-value=0.093  Score=45.61  Aligned_cols=32  Identities=28%  Similarity=0.436  Sum_probs=29.3

Q ss_pred             eEEEECCChHHHHHHHHHHhc--CCCeEEEecCC
Q 020533            9 EVIMVGAGTSGLATAACLSLQ--SIPYVILEREN   40 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~   40 (325)
                      +|+|||+|..|..+|..|++.  +.+|+++|+++
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~   35 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            699999999999999999985  78999999876

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=93.11  E-value=0.1  Score=44.98  Aligned_cols=33  Identities=33%  Similarity=0.506  Sum_probs=30.9

Q ss_pred             CeEEEEC-CChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            8 VEVIMVG-AGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         8 ~~v~IIG-aG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      .+|.||| +|..|.+.|..|.+.|++|+++++++
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~   55 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRASGYPISILDRED   55 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCc
Confidence            4799999 99999999999999999999999875

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=93.10  E-value=0.1  Score=45.50  Aligned_cols=39  Identities=31%  Similarity=0.527  Sum_probs=32.3

Q ss_pred             CCCCCCCCeEEEECCChHHHHHHHHHHhcCC--CeEEEecCC
Q 020533            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSI--PYVILEREN   40 (325)
Q Consensus         1 M~~~~~~~~v~IIGaG~~Gl~~a~~L~~~g~--~v~v~e~~~   40 (325)
                      |+++ ...+|+|||+|..|.+.|..|...+.  +++++|.+.
T Consensus         1 m~~~-~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~   41 (316)
T 1ldn_A            1 MKNN-GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (316)
T ss_dssp             CTTT-TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCC-CCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence            5543 24689999999999999999988876  799998875

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=93.08  E-value=0.1  Score=45.13  Aligned_cols=34  Identities=18%  Similarity=0.245  Sum_probs=31.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~   40 (325)
                      .++++|||+|..|.++|..|.+.|. +|+|++|+.
T Consensus       141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~  175 (297)
T 2egg_A          141 GKRILVIGAGGGARGIYFSLLSTAAERIDMANRTV  175 (297)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred             CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            4689999999999999999999998 899998875

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=93.07  E-value=0.057  Score=48.14  Aligned_cols=33  Identities=39%  Similarity=0.508  Sum_probs=30.7

Q ss_pred             CeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus         4 ~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~   36 (389)
T 2gf3_A            4 FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (389)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            479999999999999999999999999999875

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=93.07  E-value=0.043  Score=48.63  Aligned_cols=33  Identities=12%  Similarity=0.230  Sum_probs=30.7

Q ss_pred             CeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus         3 ~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~   35 (372)
T 2uzz_A            3 YDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHM   35 (372)
T ss_dssp             EEEEESCTTHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            369999999999999999999999999999875

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=93.05  E-value=0.14  Score=45.71  Aligned_cols=36  Identities=19%  Similarity=0.277  Sum_probs=32.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      ..++|+|||+|..|..++..+.+.|++++++|..+.
T Consensus        11 ~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~   46 (377)
T 3orq_A           11 FGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSED   46 (377)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            356899999999999999999999999999998754

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=93.03  E-value=0.049  Score=48.80  Aligned_cols=33  Identities=21%  Similarity=0.402  Sum_probs=31.1

Q ss_pred             CeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .+|+|||+|.+|+-+|..|++.|.+|+++.|.+
T Consensus         3 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   35 (394)
T 1k0i_A            3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT   35 (394)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            369999999999999999999999999999987

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=93.02  E-value=0.063  Score=48.47  Aligned_cols=34  Identities=26%  Similarity=0.437  Sum_probs=31.7

Q ss_pred             CeEEEECcCCCHHHHHHHHhhccCe-EEEEEecCC
Q 020533          187 KNVLVVGSGNSGMEIALDLANHAAK-TSLVVRSPV  220 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~~~~-v~~~~r~~~  220 (325)
                      .+|+|||+|.+|+-+|..|++.|.+ |+++.|.+.
T Consensus         5 ~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~   39 (410)
T 3c96_A            5 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE   39 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCC
Confidence            4799999999999999999999999 999999873

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=93.00  E-value=0.084  Score=46.10  Aligned_cols=32  Identities=25%  Similarity=0.473  Sum_probs=29.9

Q ss_pred             eEEEECCChHHHHHHHHHHhcCC--CeEEEecCC
Q 020533            9 EVIMVGAGTSGLATAACLSLQSI--PYVILEREN   40 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~--~v~v~e~~~   40 (325)
                      +|+|||+|..|.++|..|.+.|+  +|+++|+++
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~   35 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            69999999999999999999998  899999875

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=92.98  E-value=0.1  Score=44.42  Aligned_cols=32  Identities=22%  Similarity=0.257  Sum_probs=30.0

Q ss_pred             eEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      +|.|||+|..|.+.|..|.+.|++|+++++++
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   33 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            69999999999999999999999999999875

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=92.98  E-value=0.11  Score=44.60  Aligned_cols=35  Identities=23%  Similarity=0.359  Sum_probs=32.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ..++|.|||+|..|..+|..|...|.+|+++++..
T Consensus       154 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~  188 (293)
T 3d4o_A          154 HGANVAVLGLGRVGMSVARKFAALGAKVKVGARES  188 (293)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            35689999999999999999999999999999875

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=92.98  E-value=0.12  Score=44.82  Aligned_cols=35  Identities=17%  Similarity=0.245  Sum_probs=31.5

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            7 GVEVIMVGA-GTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGa-G~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      +++|+|+|| |..|..++..|.+.|++|+++.|++.
T Consensus        11 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~   46 (318)
T 2r6j_A           11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS   46 (318)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTC
T ss_pred             CCeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCC
Confidence            357999997 99999999999999999999998864

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=92.95  E-value=0.11  Score=45.32  Aligned_cols=35  Identities=17%  Similarity=0.316  Sum_probs=31.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~~   41 (325)
                      ..+|+|||+|..|.++|..|+..|+ +++++|.++.
T Consensus         7 ~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~   42 (324)
T 3gvi_A            7 RNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEG   42 (324)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCch
Confidence            3589999999999999999999998 9999998763

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=92.94  E-value=0.11  Score=44.77  Aligned_cols=35  Identities=20%  Similarity=0.356  Sum_probs=32.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ...+|.|||+|..|..+|..|...|.+|+++|++.
T Consensus       156 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~  190 (300)
T 2rir_A          156 HGSQVAVLGLGRTGMTIARTFAALGANVKVGARSS  190 (300)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            35689999999999999999999999999999875

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=92.93  E-value=0.1  Score=45.55  Aligned_cols=34  Identities=35%  Similarity=0.557  Sum_probs=30.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC--CeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI--PYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~--~v~v~e~~~   40 (325)
                      +.+|+|||+|..|..+|..|...+.  +++++|.+.
T Consensus         6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~   41 (317)
T 3d0o_A            6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDT   41 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            3689999999999999999998885  799998764

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=92.93  E-value=0.17  Score=47.04  Aligned_cols=45  Identities=22%  Similarity=0.223  Sum_probs=30.7

Q ss_pred             HHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533           91 VSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        91 a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                      +++.|+..  +++++|.+++.++  +...+.+.++       .+ +.+|.||+|+|.
T Consensus       267 l~~~GV~v--~~~~~v~~i~~~~--~v~~v~~~~g-------~~-i~aD~Vv~a~G~  311 (493)
T 1y56_A          267 LERWGIDY--VHIPNVKRVEGNE--KVERVIDMNN-------HE-YKVDALIFADGR  311 (493)
T ss_dssp             HHHHTCEE--EECSSEEEEECSS--SCCEEEETTC-------CE-EECSEEEECCCE
T ss_pred             HHhCCcEE--EeCCeeEEEecCC--ceEEEEeCCC-------eE-EEeCEEEECCCc
Confidence            44567554  8888898887542  3344554432       56 899999999994

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=92.92  E-value=0.059  Score=49.59  Aligned_cols=33  Identities=33%  Similarity=0.519  Sum_probs=30.4

Q ss_pred             CeEEEECcCCCHHHHHHHHhhccC--eEEEEEecC
Q 020533          187 KNVLVVGSGNSGMEIALDLANHAA--KTSLVVRSP  219 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~~~--~v~~~~r~~  219 (325)
                      ++|+|||+|.+|+-+|..|++.|.  +|+++++++
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~   37 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSE   37 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSS
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCC
Confidence            589999999999999999999998  999998753

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=92.92  E-value=0.11  Score=45.12  Aligned_cols=33  Identities=27%  Similarity=0.440  Sum_probs=30.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCC-CeEEEecCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~   40 (325)
                      .+|+|||||..|...|..|+..|. +++++|.+.
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~   36 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence            479999999999999999999986 899999875

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=92.90  E-value=0.073  Score=47.08  Aligned_cols=33  Identities=36%  Similarity=0.494  Sum_probs=30.6

Q ss_pred             CeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .+|+|||+|.+|+-+|..|++.|.+|+++.+..
T Consensus         7 ~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~   39 (363)
T 1c0p_A            7 KRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCEEEEEeccC
Confidence            579999999999999999999999999999863

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=92.90  E-value=0.13  Score=41.07  Aligned_cols=34  Identities=26%  Similarity=0.410  Sum_probs=31.2

Q ss_pred             CeEEEECC-ChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            8 VEVIMVGA-GTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         8 ~~v~IIGa-G~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      ++|+|+|| |..|..++..|.++|.+|++++|++.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~   38 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS   38 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChh
Confidence            57999999 99999999999999999999998753

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=92.88  E-value=0.049  Score=47.79  Aligned_cols=33  Identities=24%  Similarity=0.252  Sum_probs=30.3

Q ss_pred             CeEEEECcCCCHHHHHHHHhh---ccCeEEEEEecC
Q 020533          187 KNVLVVGSGNSGMEIALDLAN---HAAKTSLVVRSP  219 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~---~~~~v~~~~r~~  219 (325)
                      ++|+|||+|.+|+-+|..|++   .|.+|+++.+++
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~   37 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKAD   37 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSS
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCC
Confidence            379999999999999999999   888999999874

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=92.87  E-value=0.1  Score=40.03  Aligned_cols=34  Identities=15%  Similarity=0.330  Sum_probs=31.4

Q ss_pred             CCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       186 ~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .++++|+|+|..|..++..|.+.|.+|+++.+++
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~   36 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            4689999999999999999999999999999875

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=92.86  E-value=0.057  Score=48.97  Aligned_cols=32  Identities=38%  Similarity=0.531  Sum_probs=29.9

Q ss_pred             eEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      +|+|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus         3 dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~   34 (431)
T 3k7m_X            3 DAIVVGGGFSGLKAARDLTNAGKKVLLLEGGE   34 (431)
T ss_dssp             EEEEECCBHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence            69999999999999999999999999999854

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=92.84  E-value=0.11  Score=48.24  Aligned_cols=33  Identities=9%  Similarity=0.116  Sum_probs=31.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      .+|.|||+|..|..+|..|.++|++|+++++++
T Consensus        11 ~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~   43 (497)
T 2p4q_A           11 ADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQ   43 (497)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            579999999999999999999999999999876

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=92.79  E-value=0.058  Score=48.74  Aligned_cols=33  Identities=18%  Similarity=0.360  Sum_probs=31.0

Q ss_pred             CeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .+|+|||+|.+|+-+|..+++.|.+|+++.+.+
T Consensus         5 ~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~   37 (401)
T 2gqf_A            5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGK   37 (401)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            369999999999999999999999999999986

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=92.78  E-value=0.064  Score=47.74  Aligned_cols=32  Identities=22%  Similarity=0.323  Sum_probs=30.3

Q ss_pred             eEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      +|+|||+|..|...|..|.+.|++|+++++++
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            79999999999999999999999999999865

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=92.77  E-value=0.068  Score=49.60  Aligned_cols=33  Identities=27%  Similarity=0.393  Sum_probs=29.2

Q ss_pred             CeEEEECcCCCHHHHHHHHhhc-cCeEEEEEecC
Q 020533          187 KNVLVVGSGNSGMEIALDLANH-AAKTSLVVRSP  219 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~-~~~v~~~~r~~  219 (325)
                      -+|+|||+|.+|+-+|..|++. |.+|+++++++
T Consensus        11 ~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~   44 (513)
T 4gde_A           11 VDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNE   44 (513)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCC
Confidence            4799999999999999999975 88999998764

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=92.76  E-value=0.059  Score=47.95  Aligned_cols=33  Identities=24%  Similarity=0.508  Sum_probs=30.7

Q ss_pred             CeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .+|+|||+|.+|+-+|..|++.|.+|+++.+..
T Consensus         6 ~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~~   38 (382)
T 1y56_B            6 SEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRF   38 (382)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            479999999999999999999999999999874

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=92.75  E-value=0.13  Score=41.60  Aligned_cols=32  Identities=16%  Similarity=0.214  Sum_probs=30.0

Q ss_pred             eEEEECC-ChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            9 EVIMVGA-GTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         9 ~v~IIGa-G~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      +|+|+|| |..|..++..|.++|++|+++.|++
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA   34 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence            6999996 9999999999999999999999875

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=92.74  E-value=0.1  Score=43.99  Aligned_cols=32  Identities=28%  Similarity=0.317  Sum_probs=29.9

Q ss_pred             eEEEECCChHHHHHHHHHHhcC-CCeEEEecCC
Q 020533            9 EVIMVGAGTSGLATAACLSLQS-IPYVILEREN   40 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g-~~v~v~e~~~   40 (325)
                      +|.|||+|..|...|..|.+.| .+|+++++++
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~   34 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCCH
Confidence            6999999999999999999999 8999999875

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=92.74  E-value=0.12  Score=48.02  Aligned_cols=33  Identities=9%  Similarity=0.194  Sum_probs=31.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      .+|.|||+|..|..+|..|.+.|++|+++++++
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~   35 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            479999999999999999999999999999875

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=92.71  E-value=0.07  Score=48.28  Aligned_cols=34  Identities=15%  Similarity=0.433  Sum_probs=31.1

Q ss_pred             CCeEEEECcCCCHHHHHHHHhhcc-CeEEEEEecC
Q 020533          186 GKNVLVVGSGNSGMEIALDLANHA-AKTSLVVRSP  219 (325)
Q Consensus       186 ~~~v~VvG~G~s~~e~a~~l~~~~-~~v~~~~r~~  219 (325)
                      ..+|+|||+|.+|+-+|..|++.| .+|+++++++
T Consensus         6 ~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~   40 (424)
T 2b9w_A            6 DSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTD   40 (424)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            468999999999999999999999 8999998864

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=92.65  E-value=0.12  Score=44.01  Aligned_cols=33  Identities=21%  Similarity=0.214  Sum_probs=30.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCC--CeEEEecCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSI--PYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~--~v~v~e~~~   40 (325)
                      .+|.|||+|..|.+.|..|.+.|+  +|+++|+++
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   36 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            379999999999999999999998  899999875

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=92.63  E-value=0.078  Score=47.43  Aligned_cols=34  Identities=21%  Similarity=0.340  Sum_probs=31.9

Q ss_pred             CCCeEEEECcCCCHHHHHHHHhhccCeEEEEEec
Q 020533          185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRS  218 (325)
Q Consensus       185 ~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~  218 (325)
                      ...+|+|||+|.+|+-+|..|.+.|.+|+++.++
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~   76 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEAN   76 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCcEEEEecc
Confidence            4679999999999999999999999999999987

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=92.62  E-value=0.11  Score=44.45  Aligned_cols=31  Identities=26%  Similarity=0.470  Sum_probs=29.2

Q ss_pred             eEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      +|.|||+|..|...|..|.+ |++|+++++++
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~   33 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTF   33 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TSCEEEECSST
T ss_pred             eEEEEcccHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            69999999999999999999 99999999875

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=92.62  E-value=0.088  Score=47.02  Aligned_cols=34  Identities=12%  Similarity=0.236  Sum_probs=31.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhcC-------CCeEEEecCCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQS-------IPYVILERENC   41 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g-------~~v~v~e~~~~   41 (325)
                      .+|+|||+|..|.+.|..|.+.|       .+|+++++++.
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence            47999999999999999999999       99999998765

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=92.62  E-value=0.079  Score=48.97  Aligned_cols=34  Identities=24%  Similarity=0.448  Sum_probs=31.1

Q ss_pred             CCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       186 ~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      ..+|+|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus        11 ~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~   44 (489)
T 2jae_A           11 SHSVVVLGGGPAGLCSAFELQKAGYKVTVLEART   44 (489)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccC
Confidence            5689999999999999999999999999998764

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=92.60  E-value=0.13  Score=50.09  Aligned_cols=33  Identities=27%  Similarity=0.475  Sum_probs=31.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      .+|.|||+|..|...|..|++.|++|+++|+++
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  345 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNE  345 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCH
Confidence            579999999999999999999999999999886

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=92.60  E-value=0.13  Score=42.36  Aligned_cols=34  Identities=26%  Similarity=0.329  Sum_probs=31.5

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGA-GTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGa-G~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      .+.|+|.|| |..|..++..|.+.|++|++++|++
T Consensus        21 ~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   55 (236)
T 3e8x_A           21 GMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNE   55 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCeEEEECCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence            468999998 9999999999999999999999875

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=92.59  E-value=0.14  Score=42.83  Aligned_cols=33  Identities=15%  Similarity=0.308  Sum_probs=30.7

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCC----CeEEEecCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSI----PYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~----~v~v~e~~~   40 (325)
                      .+|.|||+|..|...|..|.+.|+    +|.++|+++
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~   39 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNT   39 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCH
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCH
Confidence            479999999999999999999998    999999875

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=92.58  E-value=0.098  Score=44.52  Aligned_cols=34  Identities=21%  Similarity=0.212  Sum_probs=31.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      .++++|+|+|-+|.++|..|.+.|.+|+|++|+.
T Consensus       119 ~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~  152 (272)
T 1p77_A          119 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF  152 (272)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4689999999999999999999999999998875

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=92.58  E-value=0.12  Score=43.56  Aligned_cols=34  Identities=15%  Similarity=0.144  Sum_probs=31.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhcC----CCeEEEecCCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQS----IPYVILERENC   41 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g----~~v~v~e~~~~   41 (325)
                      .+|.|||+|..|...|..|.+.|    .+|+++++++.
T Consensus         5 m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~   42 (262)
T 2rcy_A            5 IKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKK   42 (262)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCcc
Confidence            47999999999999999999999    68999998865

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=92.57  E-value=0.14  Score=44.74  Aligned_cols=34  Identities=15%  Similarity=0.323  Sum_probs=30.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC--CeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI--PYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~--~v~v~e~~~   40 (325)
                      ..+|+|||+|..|..+|..|+..|+  +++++|.+.
T Consensus        21 ~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~   56 (330)
T 3ldh_A           21 YNKITVVGCDAVGMADAISVLMKDLADEVALVDVME   56 (330)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCH
Confidence            4689999999999999999999998  899999865

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=92.56  E-value=0.15  Score=43.64  Aligned_cols=33  Identities=12%  Similarity=0.203  Sum_probs=30.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCC---CeEEEecCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSI---PYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~---~v~v~e~~~   40 (325)
                      .+|.|||+|..|.+.|..|.+.|+   +|+++|+++
T Consensus         4 ~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~   39 (280)
T 3tri_A            4 SNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSL   39 (280)
T ss_dssp             SCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSS
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCH
Confidence            579999999999999999999998   899999876

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=92.50  E-value=0.13  Score=45.04  Aligned_cols=34  Identities=21%  Similarity=0.377  Sum_probs=30.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~   40 (325)
                      ..+|+|||+|-.|..+|.+|+..|+ +++|+|...
T Consensus        34 ~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~   68 (340)
T 3rui_A           34 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT   68 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence            4689999999999999999999998 789998764

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=92.46  E-value=0.071  Score=47.79  Aligned_cols=33  Identities=24%  Similarity=0.466  Sum_probs=30.8

Q ss_pred             CeEEEECcCCCHHHHHHHHhh-cc-CeEEEEEecC
Q 020533          187 KNVLVVGSGNSGMEIALDLAN-HA-AKTSLVVRSP  219 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~-~~-~~v~~~~r~~  219 (325)
                      .+|+|||+|.+|+-+|..|++ .| .+|+++.+.+
T Consensus        22 ~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~   56 (405)
T 2gag_B           22 YDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGW   56 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            579999999999999999999 89 8999999875

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=92.46  E-value=0.078  Score=46.64  Aligned_cols=33  Identities=21%  Similarity=0.301  Sum_probs=30.3

Q ss_pred             CeEEEECcCCCHHHHHHHHhhcc------CeEEEEEecC
Q 020533          187 KNVLVVGSGNSGMEIALDLANHA------AKTSLVVRSP  219 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~~------~~v~~~~r~~  219 (325)
                      .+|+|||+|.+|+-+|..|++.|      .+|+++.+..
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~   39 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF   39 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence            37999999999999999999998      8999999875

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=92.45  E-value=0.13  Score=44.90  Aligned_cols=33  Identities=18%  Similarity=0.204  Sum_probs=30.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhcC----CCeEEEecCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQS----IPYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g----~~v~v~e~~~   40 (325)
                      .+|.|||+|..|..+|..|.+.|    ++|+++++++
T Consensus        23 mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~   59 (322)
T 2izz_A           23 MSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDM   59 (322)
T ss_dssp             CCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCc
Confidence            57999999999999999999999    7999999875

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=92.45  E-value=0.11  Score=45.12  Aligned_cols=33  Identities=27%  Similarity=0.413  Sum_probs=30.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhcC--CCeEEEecCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQS--IPYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g--~~v~v~e~~~   40 (325)
                      .+|+|||+|..|..+|..|.+.|  .+++++|++.
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~   36 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence            47999999999999999999999  6899999875

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=92.42  E-value=0.13  Score=44.00  Aligned_cols=35  Identities=17%  Similarity=0.199  Sum_probs=31.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~~   41 (325)
                      .++++|||+|-+|.+++..|.+.|. +++|+.|+..
T Consensus       117 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~  152 (277)
T 3don_A          117 DAYILILGAGGASKGIANELYKIVRPTLTVANRTMS  152 (277)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGG
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHH
Confidence            4689999999999999999999999 8999988763

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=92.41  E-value=0.12  Score=47.61  Aligned_cols=34  Identities=15%  Similarity=0.120  Sum_probs=31.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      .++|+|||+|..|...+..|.+.|.+|+|++++.
T Consensus        12 ~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~   45 (457)
T 1pjq_A           12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALTF   45 (457)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCC
Confidence            4689999999999999999999999999999854

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=92.40  E-value=0.11  Score=44.62  Aligned_cols=33  Identities=21%  Similarity=0.315  Sum_probs=30.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      .+|+|||+|..|...|..|.+.|++|.++|+++
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   38 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   38 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            479999999999999999999999999999875

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=92.39  E-value=0.064  Score=49.21  Aligned_cols=33  Identities=33%  Similarity=0.516  Sum_probs=31.1

Q ss_pred             CeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus         7 ~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~   39 (453)
T 3atr_A            7 YDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKP   39 (453)
T ss_dssp             CSEEEECCSHHHHHHHHHHSSSSCCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            369999999999999999999999999999987

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=92.38  E-value=0.041  Score=45.63  Aligned_cols=34  Identities=18%  Similarity=0.137  Sum_probs=30.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERE   39 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~   39 (325)
                      ...+|.|||+|..|-++|..|.+.|++|+.+++.
T Consensus         5 ~~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~   38 (232)
T 3dfu_A            5 PRLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP   38 (232)
T ss_dssp             CCCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH
Confidence            3468999999999999999999999999999874

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=92.36  E-value=0.083  Score=38.09  Aligned_cols=34  Identities=26%  Similarity=0.276  Sum_probs=30.8

Q ss_pred             CCeEEEECcCCCHHHHHHHHhhcc-CeEEEEEecC
Q 020533          186 GKNVLVVGSGNSGMEIALDLANHA-AKTSLVVRSP  219 (325)
Q Consensus       186 ~~~v~VvG~G~s~~e~a~~l~~~~-~~v~~~~r~~  219 (325)
                      +++|+|+|+|..|..++..|...| .+|+++.|++
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            578999999999999999999999 7899888875

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=92.36  E-value=0.15  Score=44.46  Aligned_cols=34  Identities=21%  Similarity=0.330  Sum_probs=30.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCC-CeEEEecCCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSI-PYVILERENC   41 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~~   41 (325)
                      .+|+|||+|..|.++|..|+..++ +++++|.++.
T Consensus         6 ~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~   40 (321)
T 3p7m_A            6 KKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQG   40 (321)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChH
Confidence            589999999999999999999888 9999998763

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=92.35  E-value=0.069  Score=47.32  Aligned_cols=33  Identities=21%  Similarity=0.369  Sum_probs=30.1

Q ss_pred             CCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       186 ~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .++|+|||+|.+|+-+|..|+ .|.+|+++.+.+
T Consensus         9 ~~dv~IIGaGi~Gls~A~~La-~G~~V~vlE~~~   41 (381)
T 3nyc_A            9 EADYLVIGAGIAGASTGYWLS-AHGRVVVLEREA   41 (381)
T ss_dssp             ECSEEEECCSHHHHHHHHHHT-TTSCEEEECSSS
T ss_pred             cCCEEEECCcHHHHHHHHHHh-CCCCEEEEECCC
Confidence            468999999999999999999 599999999874

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=92.28  E-value=0.086  Score=47.94  Aligned_cols=33  Identities=30%  Similarity=0.512  Sum_probs=30.9

Q ss_pred             CeEEEECcCCCHHHHHHHHhhccC-eEEEEEecC
Q 020533          187 KNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSP  219 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~~~-~v~~~~r~~  219 (325)
                      .+|+|||+|.+|+-+|..|++.|. +|+++.+.+
T Consensus         7 ~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~   40 (438)
T 3dje_A            7 SSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYP   40 (438)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            479999999999999999999999 999999876

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=92.27  E-value=0.074  Score=48.98  Aligned_cols=34  Identities=38%  Similarity=0.557  Sum_probs=30.9

Q ss_pred             CCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       186 ~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      ..+|+|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus        16 ~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~   49 (478)
T 2ivd_A           16 GMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSA   49 (478)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            5689999999999999999999999999998875

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=92.27  E-value=0.19  Score=43.66  Aligned_cols=35  Identities=20%  Similarity=0.130  Sum_probs=31.6

Q ss_pred             CCCeEEEECC-ChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            6 AGVEVIMVGA-GTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         6 ~~~~v~IIGa-G~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ..+.|+|.|| |..|..++..|.+.|++|++++|+.
T Consensus        10 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~   45 (342)
T 1y1p_A           10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSA   45 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4568999998 9999999999999999999998864

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=92.26  E-value=0.053  Score=49.64  Aligned_cols=33  Identities=30%  Similarity=0.570  Sum_probs=30.7

Q ss_pred             CeEEEECcCCCHHHHHHHHhhcc------CeEEEEEecC
Q 020533          187 KNVLVVGSGNSGMEIALDLANHA------AKTSLVVRSP  219 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~~------~~v~~~~r~~  219 (325)
                      ++|+|||+|.+|+-+|..|++.|      .+|+++++++
T Consensus         6 ~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~   44 (470)
T 3i6d_A            6 KHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASP   44 (470)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCC
Confidence            58999999999999999999999      8999999864

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=92.25  E-value=0.13  Score=43.20  Aligned_cols=34  Identities=21%  Similarity=0.439  Sum_probs=30.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~   40 (325)
                      ..+|+|||+|-.|..+|..|.+.|+ +++|+|...
T Consensus        28 ~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~   62 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD   62 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred             cCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            4689999999999999999999998 789998764

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=92.24  E-value=0.14  Score=43.07  Aligned_cols=33  Identities=15%  Similarity=0.178  Sum_probs=30.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      .+|.|||+|..|...|..|.+.|.+|.++++++
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~   36 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSL   36 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCH
Confidence            589999999999999999999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	325
d2gv8a2	107	c.3.1.5 (A:181-287) Flavin-dependent monoxygenase	1e-17
d1w4xa1	298	c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy	3e-17
d2gv8a1	335	c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox	2e-12
d1w4xa2	235	c.3.1.5 (A:155-389) Phenylacetone monooxygenase {T	2e-11
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	5e-05
d1ps9a2	162	c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-t	8e-05
d1gtea3	153	c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenas	1e-04
d1q1ra1	185	c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas	1e-04
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	1e-04
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	2e-04
d1kifa1	246	c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N	7e-04
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	8e-04
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	0.001
d1fl2a1	184	c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide	0.002
d1fl2a1	184	c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide	0.003
d1gtea4	196	c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de	0.002
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	0.002
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	0.002
d1vdca1	192	c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase	0.002
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	0.003
d1trba2	126	c.3.1.5 (A:119-244) Thioredoxin reductase {Escheri	0.003
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	0.003
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	0.004
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	0.004
d1lqta2	239	c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reduct	0.004

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 107

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 75.0 bits (184), Expect = 1e-17
 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 2/75 (2%)

Query: 154 PDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTS 213
           P+I+GL  +  +    G V+HS+ ++  + + G++VLVVG  +S  ++   L   A    
Sbjct: 2   PNIKGLDEY--AKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPI 59

Query: 214 LVVRSPVHVLSREMV 228
                    +  E +
Sbjct: 60  YQSLLGGGDIQNESL 74

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 78.3 bits (192), Expect = 3e-17
 Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 4/122 (3%)

Query: 2   KEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQ 61
           ++    V+V++VGAG SGL     L        ++E       +W    Y   R  +   
Sbjct: 2   RQPPEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESI 61

Query: 62  FCQLPHLPFPSSYP----MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNM 117
                              + S+ + + +++     F++   I +  +V +A++DEATN 
Sbjct: 62  EYCYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNT 121

Query: 118 WN 119
           W 
Sbjct: 122 WT 123

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 64.7 bits (156), Expect = 2e-12
 Identities = 36/269 (13%), Positives = 69/269 (25%), Gaps = 55/269 (20%)

Query: 10  VIMVGAGTSGLATAACLSLQSIP--YVILERENCYASIW--------------------- 46
           + ++GAG SGL TA  L  +       + ER      +W                     
Sbjct: 7   IAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTT 66

Query: 47  ------------KKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHF 94
                           Y  L+ +   +        F      F  R    E+   Y    
Sbjct: 67  EPIVGPAALPVYPSPLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPL 126

Query: 95  NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154
              P I+    V           W V      +     ++ +    + + +G    P+T 
Sbjct: 127 --LPFIKLATDVLDIEKK--DGSWVVTYKGTKAGSPISKDIF--DAVSICNGHYEVPYTG 180

Query: 155 DIRGLCSFCSSATGTGEVI-------HSTQYKNGKPYG-------GKNVLVVGSGNSGME 200
            +  +     +   + E             Y++            G  + VV    S  +
Sbjct: 181 YLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVVPFPTSQAQ 240

Query: 201 IALDLANHAAKTSLVVRSPVHVLSREMVY 229
            A      + +  L  +        E+++
Sbjct: 241 AAFLARVWSGRLKLPSKEEQLKWQDELMF 269

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 60.9 bits (146), Expect = 2e-11
 Identities = 23/164 (14%), Positives = 54/164 (32%), Gaps = 7/164 (4%)

Query: 151 PFTPDIRGLCSFCSSATGTGEVIHSTQY-KNGKPYGGKNVLVVGSGNSGMEIALDLANHA 209
           P  P+  GL  F       G + H+  +      + G+ V V+G+G+SG++++  +A  A
Sbjct: 2   PQLPNFPGLKDF------AGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQA 55

Query: 210 AKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDTLMVMLSRLVYGDLSKYGIPKPREG 269
           A+  +  R+P   +      L       +   + +      +        +         
Sbjct: 56  AELFVFQRTPHFAVPARNAPLDPEFLADLKKRYAEFREESRNTPGGTHRYQGPKSALEVS 115

Query: 270 PFFMKAAYGKYPVIDAGTCEKIKSGQIQSEQQNSQIGAQTRTEL 313
              +     +Y               ++    N ++    R ++
Sbjct: 116 DEELVETLERYWQEGGPDILAAYRDILRDRDANERVAEFIRNKI 159

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 42.0 bits (97), Expect = 5e-05
 Identities = 20/141 (14%), Positives = 41/141 (29%), Gaps = 18/141 (12%)

Query: 10  VIMVGAGTSGLATAACLSLQSIPYVILERENCYAS-------IWKKYSYDRLRLHLAKQF 62
           + +VG   SGL  A  L    +   + ER     S       +  +  +  L   +    
Sbjct: 7   IAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDS 66

Query: 63  CQLPHLPF-------PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEAT 115
             +P                   +  +F  +   Y   + +    RY  S       + +
Sbjct: 67  ISVPSSSMEYVDALTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDS 126

Query: 116 NMWNVKASNLLSPGREIEEYY 136
               ++ S+    G + E  +
Sbjct: 127 ETVQMRFSD----GTKAEANW 143

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 162

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 40.3 bits (93), Expect = 8e-05
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 8/67 (11%)

Query: 151 PFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAA 210
           P TP I G+           +V+        K   G  V ++G G  G + A+ L+    
Sbjct: 2   PRTPPIDGI--------DHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGE 53

Query: 211 KTSLVVR 217
            TS  + 
Sbjct: 54  STSQNIA 60

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} Length = 153

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 39.8 bits (92), Expect = 1e-04
 Identities = 13/104 (12%), Positives = 32/104 (30%), Gaps = 9/104 (8%)

Query: 178 YKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVV-RSPVHVLSREMVYLGVVLFK 236
             +  P     V+V+G+G++  + A       A+   +V R     +      + +   +
Sbjct: 37  CHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEE 96

Query: 237 YVPFGWVDTL--------MVMLSRLVYGDLSKYGIPKPREGPFF 272
              F    +          ++  + V  +  + G     E    
Sbjct: 97  KCEFLPFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIV 140

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 40.1 bits (92), Expect = 1e-04
 Identities = 14/103 (13%), Positives = 29/103 (28%)

Query: 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDT 245
             NV++VG+G +G+E+A  L     + ++ +     V+   +  L               
Sbjct: 3   NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLY 62

Query: 246 LMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTC 288
           L    +          G           +        +D    
Sbjct: 63  LRTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRL 105

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 40.7 bits (94), Expect = 1e-04
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 165 SATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219
            A   GEVI++    + + Y   + + +G G +G   +  L     +  +V R P
Sbjct: 24  EAPDGGEVIYNVDENDPREY---DAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWP 75

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 40.3 bits (93), Expect = 2e-04
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 9  EVIMVGAGTSGLATAACLSLQSIPYVILERE 39
          +V ++GAG SGL     L    I  VILER+
Sbjct: 4  QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 38.3 bits (88), Expect = 7e-04
 Identities = 16/111 (14%), Positives = 30/111 (27%), Gaps = 4/111 (3%)

Query: 9   EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHL 68
            V+++GAG  GL+TA C+  +    +          ++           +A    Q    
Sbjct: 2   RVVVIGAGVIGLSTALCIHERYHSVLQPLDV----KVYADRFTPFTTTDVAAGLWQPYTS 57

Query: 69  PFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWN 119
              +      ++  F   L H  S       +                 W 
Sbjct: 58  EPSNPQEANWNQQTFNYLLSHIGSPNAANMGLTPVSGYNLFREAVPDPYWK 108

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 38.0 bits (87), Expect = 8e-04
 Identities = 24/198 (12%), Positives = 55/198 (27%), Gaps = 14/198 (7%)

Query: 10  VIMVGAGTSGLATAACLSLQSIPYVILERE----NCYASIWKKYSYDRLRLHLAKQFCQL 65
            I +G G+ G+A+    ++      ++E +     C                + +     
Sbjct: 5   YIAIGGGSGGIASINRAAMYGQKCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMY 64

Query: 66  PHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNL 125
                  +     +    I     Y+   +      Y+  +   + D          +  
Sbjct: 65  GPDYGFDTTINKFNWETLIASRTAYIDRIHTS----YENVLGKNNVDVIKGFARFVDAKT 120

Query: 126 LSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS-ATGTGEVIHSTQYKNGKPY 184
           L    E     +   L+   G  ++P  P    +    +   T     I   +Y+N    
Sbjct: 121 LEVNGET--ITADHILIATGGRPSHPREPANDNINLEAAGVKTNEKGYIVVDKYQNTNI- 177

Query: 185 GGKNVLVVGSGNSGMEIA 202
             + +  VG     +E+ 
Sbjct: 178 --EGIYAVGDNTGAVELT 193

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 37.0 bits (84), Expect = 0.001
 Identities = 7/57 (12%), Positives = 18/57 (31%)

Query: 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWV 243
             V+V+G+G + +    +L     +  + V         +   L      +     +
Sbjct: 4   APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKI 60

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 36.6 bits (83), Expect = 0.002
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219
           +VL+VGSG +G   A+  A    +T L+    
Sbjct: 3   DVLIVGSGPAGAAAAIYSARKGIRTGLMGERF 34

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 35.9 bits (81), Expect = 0.003
 Identities = 19/198 (9%), Positives = 41/198 (20%), Gaps = 21/198 (10%)

Query: 9   EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHL 68
           +V++VG+G +G A A   + + I   ++        +                   + + 
Sbjct: 3   DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILD---------------TVDIENY 47

Query: 69  PFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSP 128
                            H+D Y        S                   +       S 
Sbjct: 48  ISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSI 107

Query: 129 GREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKN 188
                        +  + E        I   C          + + +       PY    
Sbjct: 108 IVATGAKLPNTNWLEGAVERNRMGEIIIDAKCET------NVKGVFAAGDCTTVPYKQII 161

Query: 189 VLVVGSGNSGMEIALDLA 206
           +       + +     L 
Sbjct: 162 IATGEGAKASLSAFDYLI 179

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 5/31 (16%), Positives = 12/31 (38%)

Query: 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVV 216
              + ++G+G + +  A  LA        + 
Sbjct: 4   SAKIALLGAGPASISCASFLARLGYSDITIF 34

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 0.002
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 10 VIMVGAGTSGLATAACLSLQSIPYVILEREN 40
          VI++G+G SGLA A  L    +   +LE  +
Sbjct: 8  VIIIGSGVSGLAAARQLQSFGMDVTLLEARD 38

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 15/121 (12%), Positives = 30/121 (24%), Gaps = 3/121 (2%)

Query: 1   MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAK 60
           M E+    +VI++G G +    +  +S+     + ++R   Y       +         +
Sbjct: 3   MDEE---YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQ 59

Query: 61  QFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNV 120
                P               +F+      V         RY                  
Sbjct: 60  LLEGPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIY 119

Query: 121 K 121
           K
Sbjct: 120 K 120

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 8/35 (22%), Positives = 13/35 (37%)

Query: 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVH 221
             + +VGSG +    A+  A    K  L      +
Sbjct: 6   TRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMAN 40

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 36.6 bits (83), Expect = 0.003
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 8  VEVIMVGAGTSGLATAACLSLQSIPYV-ILER 38
          +++++ GAG  GL+ A  L    I  V +LE 
Sbjct: 2  IDILIAGAGIGGLSCALALHQAGIGKVTLLES 33

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 126

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

 Score = 35.0 bits (80), Expect = 0.003
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 3/88 (3%)

Query: 170 GEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVY 229
           G  + +    +G  Y  + V V+G GN+ +E AL L+N A++  L+ R       + ++ 
Sbjct: 11  GRGVSACATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIK 70

Query: 230 LGVVLFKYVPFGWVDTLMVMLSRLVYGD 257
               L   V  G +          V GD
Sbjct: 71  R---LMDKVENGNIILHTNRTLEEVTGD 95

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 0.003
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 9  EVIMVGAGTSGLATAACLSLQSIPYVILEREN 40
          +V++VG G SG+A A  L    +  V+LE  +
Sbjct: 1  DVVVVGGGISGMAAAKLLHDSGLNVVVLEARD 32

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 36.3 bits (83), Expect = 0.004
 Identities = 12/100 (12%), Positives = 29/100 (29%), Gaps = 5/100 (5%)

Query: 9   EVIMVGAGTSGLATAACLSLQSIPYVILERE-----NCYASIWKKYSYDRLRLHLAKQFC 63
           + I+VG+G  G   A  L   +   +++E+      N Y    +     +   H+     
Sbjct: 3   DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGIQIHKYGAHIFHTND 62

Query: 64  QLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQ 103
           +                   +      + +     +  +Q
Sbjct: 63  KYIWDYVNDLVEFNRFTNSPLAIYKDKLFNLPFNMNTFHQ 102

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 36.1 bits (82), Expect = 0.004
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 189 VLVVGSGNSGMEIALDLANHAAKTSLVVRSPV 220
           VLVVG+G++G   +L      A   LV ++P 
Sbjct: 22  VLVVGAGSAGFNASLAAKKAGANVILVDKAPF 53

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 239

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 35.8 bits (81), Expect = 0.004
 Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 4/68 (5%)

Query: 182 KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFG 241
           +PY    + +VGSG S    A  L   AA T+  +   V +L       G+V     P  
Sbjct: 1   RPY---YIAIVGSGPSAFFAAASLLK-AADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDH 56

Query: 242 WVDTLMVM 249
                +  
Sbjct: 57  PKIKSISK 64

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	325
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.95
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.92
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	99.76
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.74
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	99.66
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	99.6
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.58
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.58
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.46
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.44
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.44
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.42
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.41
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	99.41
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.4
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.4
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.37
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	99.35
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.34
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.34
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.33
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.33
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.32
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.3
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.29
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.29
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	99.29
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	99.28
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.27
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	99.26
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.25
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.25
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	99.25
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.25
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.24
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.22
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	99.2
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	99.2
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.2
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.19
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	99.19
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.19
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.18
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.18
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	99.16
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.15
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.13
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.11
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.11
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	99.1
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.08
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	99.07
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.07
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.06
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.06
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.05
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	99.0
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.99
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	98.99
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.98
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.95
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.94
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.9
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.89
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.88
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.87
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.86
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.85
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.84
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.84
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	98.83
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	98.82
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.81
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.81
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.79
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.77
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	98.77
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.77
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.76
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.75
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.74
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.72
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.72
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.71
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.7
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.7
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	98.68
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.65
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	98.63
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.63
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	98.62
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.56
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	98.56
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.53
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.52
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.52
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.51
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.49
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.44
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.41
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.41
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	98.41
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.4
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.31
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.3
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.29
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.27
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.26
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	98.21
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	98.15
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.13
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.09
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	97.92
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	97.89
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	97.89
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	97.85
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	97.84
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	97.74
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	97.72
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.67
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	97.66
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.62
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	97.58
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	97.55
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	97.5
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	97.43
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	97.43
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.4
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.38
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.37
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	97.37
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.15
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.95
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.93
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	96.92
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.9
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	96.87
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.85
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.82
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.73
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.71
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.66
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	96.62
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	96.6
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.59
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.58
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.57
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.54
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.52
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	96.47
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.44
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.34
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	96.3
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	96.28
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	96.21
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	96.2
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	96.18
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	96.16
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.15
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	96.1
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.06
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.0
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	95.97
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	95.97
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.96
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	95.96
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	95.95
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	95.91
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	95.88
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	95.86
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	95.8
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	95.79
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	95.79
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	95.77
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	95.71
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	95.68
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	95.66
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	95.62
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	95.56
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	95.51
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	95.44
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	95.43
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	95.37
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	95.34
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	95.33
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	95.23
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	95.23
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	95.2
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	95.16
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	95.15
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	95.14
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.14
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.12
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	95.11
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	95.07
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	95.06
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	95.03
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	94.98
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	94.98
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	94.94
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	94.91
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	94.91
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	94.91
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	94.87
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	94.85
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	94.85
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	94.82
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	94.8
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	94.78
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	94.76
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	94.69
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	94.67
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	94.58
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	94.53
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	94.53
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	94.42
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	94.41
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	94.37
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	94.34
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	94.33
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	94.33
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	94.29
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	94.28
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	94.19
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	94.19
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	94.04
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	93.97
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	93.96
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	93.94
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	93.9
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	93.89
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	93.74
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	93.72
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	93.71
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	93.66
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	93.58
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	93.58
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	93.54
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	93.36
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	93.3
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	93.25
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	93.22
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	93.21
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	93.19
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	93.19
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	93.11
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	93.06
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	93.0
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	92.99
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	92.94
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	92.92
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	92.75
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	92.74
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	92.69
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	92.68
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	92.64
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	92.45
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	92.44
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	92.35
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	92.33
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	92.32
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	92.29
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	92.14
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	91.96
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	91.92
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	91.91
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	91.87
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	91.79
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	91.71
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	91.7
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	91.64
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	91.62
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	91.45
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	91.36
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	91.31
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	91.15
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	91.12
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	90.96
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	90.91
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	90.89
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	90.87
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	90.6
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	90.57
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	90.53
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	90.49
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	90.38
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	90.33
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	90.28
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	90.2
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	89.99
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	89.88
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	89.82
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	89.79
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	89.75
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	89.59
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	89.53
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	89.48
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	89.39
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	89.37
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	89.27
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	88.78
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	88.42
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	88.38
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	88.37
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	88.33
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	88.28
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	88.09
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	87.92
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	87.89
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	87.86
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	87.83
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	87.82
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	87.66
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	87.62
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	87.57
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	87.46
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	87.44
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	87.35
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	87.33
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	87.16
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	87.06
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	87.03
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	86.78
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	86.71
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	86.65
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	86.63
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	86.59
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	86.59
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	86.43
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	86.39
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	86.19
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	86.07
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	86.04
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	85.92
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	85.91
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	85.86
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	85.85
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	85.85
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	85.81
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	85.76
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	85.74
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	85.55
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	85.49
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	85.48
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	85.42
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	85.33
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	85.27
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	85.15
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	85.09
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	85.01
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	85.01
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	84.94
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	84.85
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	84.85
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	84.68
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	84.68
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	84.67
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	84.62
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	84.57
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	84.49
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	84.45
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	84.38
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	84.37
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	84.34
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	84.31
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	84.25
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	84.11
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	84.02
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	83.95
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	83.94
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	83.91
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	83.79
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	83.71
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	83.66
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	83.62
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	83.61
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	83.55
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	83.46
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	83.39
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	83.25
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	83.21
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	83.2
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	83.16
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	83.15
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	83.14
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	83.07
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	83.05
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	83.04
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	83.0
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	82.99
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	82.99
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	82.85
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	82.56
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	82.49
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	82.14
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	82.07
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	81.89
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	81.72
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	81.69
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	81.66
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	81.57
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	81.51
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	81.41
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	81.4
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	81.39
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	81.31
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	81.29
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	81.28
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	81.24
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	81.23
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	81.21
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	81.1
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	81.07
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	81.02
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	80.99
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	80.97
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	80.81
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	80.69
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	80.57
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	80.54
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	80.48
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	80.31
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	80.22
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	80.19
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	80.08
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	80.02

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.95  E-value=2.6e-29  Score=219.17  Aligned_cols=165  Identities=21%  Similarity=0.334  Sum_probs=144.1

Q ss_pred             CCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCC----CCCCCCCC
Q 020533            3 EQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPF----PSSYPMFV   78 (325)
Q Consensus         3 ~~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~----~~~~~~~~   78 (325)
                      ++++..||+|||||++||++|+.|++.|++++|||+++.+||+|+.+.|++++++.+...+.++..+.    ..+...++
T Consensus         3 ~p~~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~p   82 (298)
T d1w4xa1           3 QPPEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYA   82 (298)
T ss_dssp             CCCSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSC
T ss_pred             CCCCCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCccccC
Confidence            45667899999999999999999999999999999999999999999999999999988888877653    24556789


Q ss_pred             CHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCC
Q 020533           79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRG  158 (325)
Q Consensus        79 ~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g  158 (325)
                      +++++.+|+++++++++|..+|+|+++|+++++++..+.|+|++.++       .+ +++|+||+|||..+.|..|.+++
T Consensus        83 ~~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~-------~~-~~~~~~i~atG~ls~~~~p~~~~  154 (298)
T d1w4xa1          83 SQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHG-------DR-IRARYLIMASGQLSDALTGALFK  154 (298)
T ss_dssp             BHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTC-------CE-EEEEEEEECCCSCCCCTTHHHHT
T ss_pred             ccchHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccc-------cc-cccceEEEeecccccccCCcccc
Confidence            99999999999999999988999999999999998889999999875       56 88999999999999999999888


Q ss_pred             ccccccCCCCCccEEecCCCCC
Q 020533          159 LCSFCSSATGTGEVIHSTQYKN  180 (325)
Q Consensus       159 ~~~~~~~~~~~g~~~~~~~~~~  180 (325)
                      ++.+-     ++-..++..|.+
T Consensus       155 ~~i~g-----~~g~~l~~~W~~  171 (298)
T d1w4xa1         155 IDIRG-----VGNVALKEKWAA  171 (298)
T ss_dssp             SEEEC-----GGGCBHHHHTTT
T ss_pred             ccccc-----CCCeeehhhchh
Confidence            87430     445566666664

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.92  E-value=4.7e-26  Score=202.38  Aligned_cols=198  Identities=18%  Similarity=0.199  Sum_probs=142.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcC--CCeEEEecCCCCCCccCCCCCCceE-----------------------------
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYASIWKKYSYDRLR-----------------------------   55 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g--~~v~v~e~~~~~Gg~w~~~~y~~~~-----------------------------   55 (325)
                      .++|||||||+|||++|+.|++.|  .+|+||||++.+||+|+.+.+++..                             
T Consensus         4 ~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~y   83 (335)
T d2gv8a1           4 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLY   83 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCCC
T ss_pred             CCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCcccccccccccccccccccccccccc
Confidence            468999999999999999998876  4999999999999999876554433                             


Q ss_pred             ----eecCCCccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCce
Q 020533           56 ----LHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE  131 (325)
Q Consensus        56 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~  131 (325)
                          .+.+..++.++..+++.+.+.|+++.++.+|+..+++.++  .+|+|+++|+++++++  ++|.|++++...+. +
T Consensus        84 ~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~yl~~~~~~~~--~~I~~~t~V~~v~~~~--~~w~Vt~~~~~~~~-~  158 (335)
T d2gv8a1          84 RDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLL--PFIKLATDVLDIEKKD--GSWVVTYKGTKAGS-P  158 (335)
T ss_dssp             TTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGG--GGEECSEEEEEEEEET--TEEEEEEEESSTTC-C
T ss_pred             hhhhcCCcHhhhhhhhhcCCcccccCCchHHHHHHHHHHHHHhh--hcccCceEEEEEEecC--CEEEEEEEecCCCC-e
Confidence                3333444456667777778889999999999999999865  5679999999999876  88999998765542 2


Q ss_pred             eEEEEEeCeEEEcccCCCCCCCCCC-----CCccccccCCCCCccEE-----------ecCCCCC-CCCCCCCeEEEECc
Q 020533          132 IEEYYSGRFLVVASGETTNPFTPDI-----RGLCSFCSSATGTGEVI-----------HSTQYKN-GKPYGGKNVLVVGS  194 (325)
Q Consensus       132 ~~~~~~ad~vIiAtG~~~~p~~p~~-----~g~~~~~~~~~~~g~~~-----------~~~~~~~-~~~~~~~~v~VvG~  194 (325)
                      ... ..||+||+|||.++.|..|.+     |+.+.|...   ...++           |...+.+ ...+.|+.+.|++.
T Consensus       159 ~~~-~~~d~VI~AtG~~s~p~~~~~~~~~~p~~~~f~~~---~~~~~~~~~~~~~ly~~~~~~~~p~l~f~G~~~~v~~~  234 (335)
T d2gv8a1         159 ISK-DIFDAVSICNGHYEVPYTGYLYSVPFPSLAKLKSP---ETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVVPF  234 (335)
T ss_dssp             EEE-EEESEEEECCCSSSSBCCCBCCCCCCHHHHSCCST---TTCCCSSSSSCCSEETTTEETTCTTEEESSCCBSSCHH
T ss_pred             EEE-EEeeEEEEcccccccceecccccCCCCcchhcccC---ccceeccccceeeeecccccCCCCceEEeeeEEEEecC
Confidence            345 679999999999999988864     454444100   11111           1111111 12244666666677


Q ss_pred             CCCHHHHHHHHhhccCeEE
Q 020533          195 GNSGMEIALDLANHAAKTS  213 (325)
Q Consensus       195 G~s~~e~a~~l~~~~~~v~  213 (325)
                      +.++++.+..+.-...++.
T Consensus       235 ~~~e~Qa~~~a~~~~g~~~  253 (335)
T d2gv8a1         235 PTSQAQAAFLARVWSGRLK  253 (335)
T ss_dssp             HHHHHHHHHHHHHHTTSSC
T ss_pred             CchHHHHHHHHHHHcCCcc
Confidence            7777777666665555543

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.76  E-value=1.1e-21  Score=164.87  Aligned_cols=167  Identities=11%  Similarity=0.091  Sum_probs=104.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      ..++|+||||||+||++|..|+++|++|+|+|+++.+||.|.....             .         +.+.......+
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~~~~-------------~---------~~~~~~~~~~~  105 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAA-------------L---------PGLGEWSYHRD  105 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTT-------------S---------TTCGGGGHHHH
T ss_pred             CCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCccccccc-------------c---------ceeecccccch
Confidence            4689999999999999999999999999999999999999874211             0         01111123334


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~  165 (325)
                      +......+.....  . ...+   ..    +...+.....       .+ +.+|+||+|||.  .+..|.+++.+..   
T Consensus       106 ~~~~~~~~~~~~~--~-~~~~---~~----~~~~~~~~~~-------~~-~~~d~vviAtG~--~~~~~~~~~~~~~---  162 (233)
T d1djqa3         106 YRETQITKLLKKN--K-ESQL---AL----GQKPMTADDV-------LQ-YGADKVIIATGA--SECTLWNELKARE---  162 (233)
T ss_dssp             HHHHHHHHHHTTC--T-TCEE---EC----SCCCCCHHHH-------HT-SCCSEEEECCCE--ECCHHHHHHHHTT---
T ss_pred             hHHHHHHHHhhcc--e-eeee---ec----ccccccchhh-------hh-hccceeeeccCC--Ccccccccccccc---
Confidence            4444444332211  0 1111   11    1111111211       34 688999999994  4444433332211   


Q ss_pred             CCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533          166 ATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       166 ~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                         .....+...........+++++|+|+|++|+|+|..|++.|.+|++++|++.
T Consensus       163 ---~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~  214 (233)
T d1djqa3         163 ---SEWAENDIKGIYLIGDAEAPRLIADATFTGHRVAREIEEANPQIAIPYKRET  214 (233)
T ss_dssp             ---HHHHHTTCCEEEECGGGTSCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCC
T ss_pred             ---cccchhhhhhhhhccccCCceeEecCchHHHHHHHHHHhcCCceEEEEeccc
Confidence               1111222222222334578999999999999999999999999999999873

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=9.3e-20  Score=145.35  Aligned_cols=132  Identities=15%  Similarity=0.161  Sum_probs=99.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      .+++|+||||||+||++|..|+++|++|+|||+.+.+||.++...                      ..+.+....++.+
T Consensus        42 ~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~----------------------~~p~~~~~~~~~~   99 (179)
T d1ps9a3          42 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAK----------------------QIPGKEEFYETLR   99 (179)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHT----------------------TSTTCTTHHHHHH
T ss_pred             CCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEE----------------------eCcccchHHHHHH
Confidence            468999999999999999999999999999999999999765210                      0123445568899


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCccccccC
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~~~~~~~  165 (325)
                      |+.+.++++++..  +++++|+.               +        .. ..+|.||+|||  ..|+.+.+|+.+     
T Consensus       100 ~~~~~~~~~gV~i--~l~~~Vt~---------------~--------~~-~~~d~vilAtG--~~~~~~~~pg~~-----  146 (179)
T d1ps9a3         100 YYRRMIEVTGVTL--KLNHTVTA---------------D--------QL-QAFDETILASG--IPNRALAQPLID-----  146 (179)
T ss_dssp             HHHHHHHHHTCEE--EESCCCCS---------------S--------SS-CCSSEEEECCC--EECCTTHHHHHT-----
T ss_pred             HHHHhhhcCCeEE--EeCCEEcc---------------c--------cc-ccceeEEEeec--CCCcccccchhc-----
Confidence            9999999998654  88887621               1        12 46789999999  556655554432     


Q ss_pred             CCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHH-HHHHhhccCe
Q 020533          166 ATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEI-ALDLANHAAK  211 (325)
Q Consensus       166 ~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~-a~~l~~~~~~  211 (325)
                                         .+++++|||+|.+++|+ +......|.+
T Consensus       147 -------------------~g~~v~vigggd~a~~~~~~~Av~~G~~  174 (179)
T d1ps9a3         147 -------------------SGKTVHLIGGCDVAMELDARRAIAQGTR  174 (179)
T ss_dssp             -------------------TTCCEEECGGGTCCSSCCHHHHHHHHHH
T ss_pred             -------------------cCCEEEEECCcHhhhhccchhhhhccCE
Confidence                               26899999999999986 4444445544

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.66  E-value=2.3e-16  Score=131.72  Aligned_cols=71  Identities=27%  Similarity=0.552  Sum_probs=65.6

Q ss_pred             CCCCCCCCCccccccCCCCCccEEecCCCC-CCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechh
Q 020533          150 NPFTPDIRGLCSFCSSATGTGEVIHSTQYK-NGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSRE  226 (325)
Q Consensus       150 ~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~  226 (325)
                      .|++|++||++.|      +|.++||++|. +..+++||+|+|||+|.||+|+|.++++.+++++++.|++.++.|+.
T Consensus         1 vP~iP~~pG~e~F------~G~v~HS~~~~~~~~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~~~~~~~~   72 (235)
T d1w4xa2           1 VPQLPNFPGLKDF------AGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPAR   72 (235)
T ss_dssp             CCCCCCCTTGGGC------CSEEEEGGGCCSSCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECC
T ss_pred             CCCCCCCCChhhC------CCcEEecCcCCCCCCCCCCCEEEEECCCccHHHHHHHHHhhhccccccccccceeeeec
Confidence            3899999999999      99999999996 45689999999999999999999999999999999999998888753

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=9.7e-18  Score=138.81  Aligned_cols=183  Identities=13%  Similarity=0.166  Sum_probs=99.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC-CCCCceEeecCCCccC-C----CCCCCCCCCCCCCCH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQFCQ-L----PHLPFPSSYPMFVSR   80 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~-~~y~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~   80 (325)
                      +|||+||||||+|+++|.++++.|.+|+|+|++ .+||+|.. .+++...+......+. +    ....+.. .......
T Consensus         2 ~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~-~~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~-~~~~~~~   79 (217)
T d1gesa1           2 HYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDT-TINKFNW   79 (217)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEE-EEEEECH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecc-CcCCeEecccccccccchhhHHHHHHHHhhhhhcCccC-CcccccH
Confidence            589999999999999999999999999999996 58998843 2222111110000000 0    0000000 0011223


Q ss_pred             HHHHHHHHHH-----------HHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533           81 AQFIEHLDHY-----------VSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (325)
Q Consensus        81 ~~~~~yl~~~-----------a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~  149 (325)
                      .++.++....           .++.++..  .........      . ..+....        .. +.++.+++|||  +
T Consensus        80 ~~~~~~~~~~v~~~~~~~~~~l~~~gV~v--~~~~~~~~~------~-~~~~~~~--------~~-~~~~~~iiatG--~  139 (217)
T d1gesa1          80 ETLIASRTAYIDRIHTSYENVLGKNNVDV--IKGFARFVD------A-KTLEVNG--------ET-ITADHILIATG--G  139 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEE--EESCCEEEE------T-TEEEETT--------EE-EEEEEEEECCC--E
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCeEEE--Eeeecccce------e-eeecCCC--------ce-eeeeeeeeecC--c
Confidence            3444433322           22233321  222111000      0 0111111        66 89999999999  7


Q ss_pred             CCCCCCCCCccccccCCCCCccEEecCCC---CCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEE
Q 020533          150 NPFTPDIRGLCSFCSSATGTGEVIHSTQY---KNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTS  213 (325)
Q Consensus       150 ~p~~p~~~g~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~  213 (325)
                      .|.+|.+|+.+...  ....+.......+   ........++|.+||+|.+|+|+|..+++.|.+|+
T Consensus       140 ~p~ip~ip~~~~l~--l~~~gv~~~~~~~i~~d~~~~t~~~~i~~iG~g~~g~ela~~~~~~G~~v~  204 (217)
T d1gesa1         140 RPSHPREPANDNIN--LEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAVELTPVAVAAGRRLS  204 (217)
T ss_dssp             EECCCEEESCTTSC--HHHHTCCBCTTSCBCCCTTSBCSSTTEEECSGGGTSCCCHHHHHHHHHHHH
T ss_pred             cccCCCCCCcCCcc--cccccEEEcCCccEeeCchhccCCCcEEEECCCccHHHHHHHHHHHHHHHH
Confidence            88888888665320  0001111111111   11122345789999999999999999999987763

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.58  E-value=8.4e-16  Score=129.64  Aligned_cols=134  Identities=17%  Similarity=0.237  Sum_probs=88.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC--CCCceEee---------cCC--Ccc----------
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY--SYDRLRLH---------LAK--QFC----------   63 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~--~y~~~~~~---------~~~--~~~----------   63 (325)
                      +|||+|||||++||++|..|+++|++|+|+||++.+|+.+...  ........         .+.  ...          
T Consensus         2 ~yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (251)
T d2i0za1           2 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNE   81 (251)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhhhhhhH
Confidence            5899999999999999999999999999999999887532110  00000000         000  000          


Q ss_pred             ------CCCCCCC--CC---CCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcE-EEEEeecCCCCce
Q 020533           64 ------QLPHLPF--PS---SYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMW-NVKASNLLSPGRE  131 (325)
Q Consensus        64 ------~~~~~~~--~~---~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~-~v~~~~~~~~~~~  131 (325)
                            .....+.  ..   .++......++.+.|.+.+++.++..  +++++|++++.++  +.+ .|.++++      
T Consensus        82 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~gv~i--~~~~~v~~i~~~~--~~~~~v~~~~g------  151 (251)
T d2i0za1          82 DIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKI--RTNTPVETIEYEN--GQTKAVILQTG------  151 (251)
T ss_dssp             HHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEE--ECSCCEEEEEEET--TEEEEEEETTC------
T ss_pred             HHHHHHHhcCCccccccccceecccccHHHHHHHHHHHHHHcCCcc--cCCcEEEEEEEEC--CEEEEEEeCCC------
Confidence                  0000000  00   01122355778889999999888655  9999999998875  444 3555543      


Q ss_pred             eEEEEEeCeEEEcccCCCCCC
Q 020533          132 IEEYYSGRFLVVASGETTNPF  152 (325)
Q Consensus       132 ~~~~~~ad~vIiAtG~~~~p~  152 (325)
                       .. ++||+||+|||..+.|.
T Consensus       152 -~~-i~a~~vI~AtGg~S~p~  170 (251)
T d2i0za1         152 -EV-LETNHVVIAVGGKSVPQ  170 (251)
T ss_dssp             -CE-EECSCEEECCCCSSSGG
T ss_pred             -Ce-EecCeEEEccCCccccc
Confidence             57 89999999999877664

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.58  E-value=1.4e-15  Score=128.64  Aligned_cols=137  Identities=15%  Similarity=0.115  Sum_probs=85.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCc--------cCC-CCC--C-ceEeecCCCccC----CC----
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI--------WKK-YSY--D-RLRLHLAKQFCQ----LP----   66 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~--------w~~-~~y--~-~~~~~~~~~~~~----~~----   66 (325)
                      .+||+|||||++||.+|..|+++|.+|+|||+++.+|+.        ++. +..  + ......+.....    +.    
T Consensus         4 ~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~~~~~~~   83 (253)
T d2gqfa1           4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDF   83 (253)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHH
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceEecCCccccccCcccCchhhhccChHHHHHHhhhhcccch
Confidence            479999999999999999999999999999999988732        111 000  0 000011110000    00    


Q ss_pred             -------CCCC--CCCCCCC--CCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEE
Q 020533           67 -------HLPF--PSSYPMF--VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY  135 (325)
Q Consensus        67 -------~~~~--~~~~~~~--~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~  135 (325)
                             ...+  ......+  -...++.+.|.+.+++.++..  +++++|++++..++.....+......      .+ 
T Consensus        84 ~~~~~~~g~~~~~~~~~~~~~~~~a~~i~~~L~~~~~~~gV~i--~~~~~V~~i~~~~~~~~v~~~~~~~~------~~-  154 (253)
T d2gqfa1          84 ISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKI--LLRSEVSQVERIQNDEKVRFVLQVNS------TQ-  154 (253)
T ss_dssp             HHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEE--ECSCCEEEEEECCSCSSCCEEEEETT------EE-
T ss_pred             hhhhhhcCcceeeecCCccccccchhHHHHHHHHHHHHcCCCe--ecCceEEEEEeecCCceeEEEEecCC------EE-
Confidence                   0000  0000011  135678899999999998655  99999999988763332222222211      67 


Q ss_pred             EEeCeEEEcccCCCCCC
Q 020533          136 YSGRFLVVASGETTNPF  152 (325)
Q Consensus       136 ~~ad~vIiAtG~~~~p~  152 (325)
                      ++||+||+|||..+.|.
T Consensus       155 ~~a~~VIiAtGG~S~p~  171 (253)
T d2gqfa1         155 WQCKNLIVATGGLSMPG  171 (253)
T ss_dssp             EEESEEEECCCCSSCGG
T ss_pred             EEeCEEEEcCCcccccc
Confidence            99999999999766554

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.46  E-value=9.3e-14  Score=118.88  Aligned_cols=132  Identities=17%  Similarity=0.244  Sum_probs=87.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC--ccCCC------CCCc------------------------
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS--IWKKY------SYDR------------------------   53 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg--~w~~~------~y~~------------------------   53 (325)
                      .+|||+|||||++|+++|++|+++|++|+|+|+.+..++  .+...      .|..                        
T Consensus         2 ~~yDvvIIGaGi~Gls~A~~La~~G~~V~viE~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~e~~~   81 (281)
T d2gf3a1           2 THFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVPLALRSQELWYELEKETHH   81 (281)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSSCSSSSSCSSEEEECSSCTTCGGGHHHHHHHHHHHHHHHHHCSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcccccCCCcceeecccCCcchhhhhcccccceeecchhhhhh
Confidence            479999999999999999999999999999999865432  22110      0100                        


Q ss_pred             --------eEeecCCCc-------------------c-------CCCCCCCCCCC-------CCCCCHHHHHHHHHHHHH
Q 020533           54 --------LRLHLAKQF-------------------C-------QLPHLPFPSSY-------PMFVSRAQFIEHLDHYVS   92 (325)
Q Consensus        54 --------~~~~~~~~~-------------------~-------~~~~~~~~~~~-------~~~~~~~~~~~yl~~~a~   92 (325)
                              +........                   .       .++....+...       ........+...+.+.++
T Consensus        82 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~e~~~~~p~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~a~  161 (281)
T d2gf3a1          82 KIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEINKRWPGITVPENYNAIFEPNSGVLFSENCIRAYRELAE  161 (281)
T ss_dssp             CCEECCCEEEEEETTCCHHHHHHHHHHHHTTCCCEEEETHHHHHHSTTCCCCTTEEEEEETTCEEEEHHHHHHHHHHHHH
T ss_pred             ccccccceeeeeecchhhhhhhhhhhhccccchhhhhhhHhhhhhhhcccccccceeeeccccccccccccccccccccc
Confidence                    000000000                   0       00111111100       012344678888999999


Q ss_pred             HcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533           93 HFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (325)
Q Consensus        93 ~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~  150 (325)
                      +.|...  +++++|.+++..+  +.|.|.+.+        .+ +.||.||+|+|.++.
T Consensus       162 ~~Gv~i--~~~~~V~~i~~~~--~~v~V~t~~--------g~-i~a~~VViAaG~~s~  206 (281)
T d2gf3a1         162 ARGAKV--LTHTRVEDFDISP--DSVKIETAN--------GS-YTADKLIVSMGAWNS  206 (281)
T ss_dssp             HTTCEE--ECSCCEEEEEECS--SCEEEEETT--------EE-EEEEEEEECCGGGHH
T ss_pred             cccccc--cCCcEEEEEEEEC--CEEEEEECC--------cE-EEcCEEEECCCCcch
Confidence            998654  9999999999876  679888876        56 899999999997654

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.44  E-value=6.5e-14  Score=119.42  Aligned_cols=60  Identities=15%  Similarity=0.040  Sum_probs=49.2

Q ss_pred             CCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533           77 FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (325)
Q Consensus        77 ~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~  149 (325)
                      +.....+...|.+.+++.|...  +.+++|++++.+.  +.|.|++.+        .+ +.||.||+|+|.++
T Consensus       147 ~i~~~~~~~~l~~~~~~~Gv~i--~~~~~V~~i~~~~--~~~~V~t~~--------g~-i~a~~vV~AaG~~s  206 (276)
T d1ryia1         147 HVEPYFVCKAYVKAAKMLGAEI--FEHTPVLHVERDG--EALFIKTPS--------GD-VWANHVVVASGVWS  206 (276)
T ss_dssp             BCCHHHHHHHHHHHHHHTTCEE--ETTCCCCEEECSS--SSEEEEETT--------EE-EEEEEEEECCGGGT
T ss_pred             eeecccchhHHHHHHHHcCCEE--ecceEEEeEEeec--ceEEEecCC--------eE-EEcCEEEECCCccH
Confidence            4566788888889999998655  8999999998764  678888865        56 89999999999765

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=9.7e-13  Score=97.01  Aligned_cols=96  Identities=13%  Similarity=0.040  Sum_probs=79.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      +.+|+|||||+.|+.+|..|++.|.+|+|+|+.+.+..                               .  ..+++.++
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~-------------------------------~--~d~~~~~~   67 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP-------------------------------S--FDPMISET   67 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-------------------------------T--SCHHHHHH
T ss_pred             CCEEEEECCChhhHHHHHHhhccccEEEEEeecchhhh-------------------------------h--cchhhHHH
Confidence            46899999999999999999999999999999986431                               0  12478899


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEccc
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASG  146 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG  146 (325)
                      +.+..++.++..  +++++|.++..++ ++..+++++++       .+ +.+|.||+|+|
T Consensus        68 ~~~~l~~~GV~~--~~~~~v~~i~~~~-~~~~~v~~~~g-------~~-~~~D~vi~a~G  116 (116)
T d1gesa2          68 LVEVMNAEGPQL--HTNAIPKAVVKNT-DGSLTLELEDG-------RS-ETVDCLIWAIG  116 (116)
T ss_dssp             HHHHHHHHSCEE--ECSCCEEEEEECT-TSCEEEEETTS-------CE-EEESEEEECSC
T ss_pred             HHHHHHHCCCEE--EeCCEEEEEEEcC-CcEEEEEECCC-------CE-EEcCEEEEecC
Confidence            999999999665  9999999998764 35567777765       56 89999999998

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.41  E-value=2.3e-12  Score=95.40  Aligned_cols=99  Identities=15%  Similarity=0.138  Sum_probs=81.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      .+.+++|||||+.|+.+|..|++.|.+|+++++++++.-                                 .-.+++.+
T Consensus        21 ~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~---------------------------------~~d~ei~~   67 (119)
T d3lada2          21 VPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLP---------------------------------AVDEQVAK   67 (119)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST---------------------------------TSCHHHHH
T ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCC---------------------------------cccchhHH
Confidence            346899999999999999999999999999999986420                                 01347899


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEccc
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASG  146 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG  146 (325)
                      ++.+..++.|+..  +++++|++++.++  +..++++.+.++    ..+ +.||.|++|+|
T Consensus        68 ~l~~~l~~~Gv~i--~~~~~v~~i~~~~--~~v~v~~~~~~~----~~~-~~~D~vlvAvG  119 (119)
T d3lada2          68 EAQKILTKQGLKI--LLGARVTGTEVKN--KQVTVKFVDAEG----EKS-QAFDKLIVAVG  119 (119)
T ss_dssp             HHHHHHHHTTEEE--EETCEEEEEEECS--SCEEEEEESSSE----EEE-EEESEEEECSC
T ss_pred             HHHHHHHhcCcee--ecCcEEEEEEEeC--CEEEEEEEECCC----CEE-EECCEEEEeeC
Confidence            9999999988655  9999999998865  566777776543    267 89999999998

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.41  E-value=1.8e-15  Score=126.56  Aligned_cols=153  Identities=13%  Similarity=0.015  Sum_probs=90.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcC-------CCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQS-------IPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVS   79 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g-------~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (325)
                      +++|+|||||||||+||..|+++|       ++|+|||+.+.+||.|+...++                       .+..
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi~p-----------------------~~~~   58 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAP-----------------------DHPK   58 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCT-----------------------TCTG
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeeccCc-----------------------cccc
Confidence            469999999999999999999987       4799999999999999754221                       2222


Q ss_pred             HHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCCCCCCCc
Q 020533           80 RAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGL  159 (325)
Q Consensus        80 ~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~p~~~g~  159 (325)
                      ...+.++........++.  +++++++..   +       +..++        .. ..++.+++|||..  +..+..+|.
T Consensus        59 ~~~~~~~~~~~~~~~g~~--~~~~~~v~~---~-------~~~~~--------~~-~~~~~v~~atGa~--~~~~~~~g~  115 (239)
T d1lqta2          59 IKSISKQFEKTAEDPRFR--FFGNVVVGE---H-------VQPGE--------LS-ERYDAVIYAVGAQ--SRGVPTPGL  115 (239)
T ss_dssp             GGGGHHHHHHHHTSTTEE--EEESCCBTT---T-------BCHHH--------HH-HHSSEEEECCCCC--EECCCCTTS
T ss_pred             chhhhhhhhhhhccCCce--EEEEEEecc---c-------cchhh--------hh-ccccceeeecCCC--ccccccccc
Confidence            334555555556555543  366655410   0       01111        22 3679999999963  333333333


Q ss_pred             cccccCCCCCccEEecC----CC--CCCCCCCCCeEEEECcCCCHHHHHHHHhh
Q 020533          160 CSFCSSATGTGEVIHST----QY--KNGKPYGGKNVLVVGSGNSGMEIALDLAN  207 (325)
Q Consensus       160 ~~~~~~~~~~g~~~~~~----~~--~~~~~~~~~~v~VvG~G~s~~e~a~~l~~  207 (325)
                      +...  .......++..    ..  .......+++++|+|+|+++.|++..+..
T Consensus       116 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vv~g~g~~a~d~a~~~v~  167 (239)
T d1lqta2         116 PFDD--QSGTIPNVGGRINGSPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTLIK  167 (239)
T ss_dssp             CCBT--TTTBCCEETTEETTCSSEEECTHHHHCSCSCTTHHHHHHHHHHHHHHH
T ss_pred             cccc--cccchhhhhhhhccccccccceeecCCCEEEEeCCCchHHHHHHHHHh
Confidence            2210  00000111110    00  00111246788999999999999876654

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.40  E-value=5.8e-12  Score=93.55  Aligned_cols=101  Identities=14%  Similarity=0.204  Sum_probs=81.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      .+.+++|||||+.|+.+|..|++.|.+|+|+|+++++.                               +.  -.+++.+
T Consensus        22 ~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l-------------------------------~~--~d~ei~~   68 (122)
T d1v59a2          22 IPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIG-------------------------------AS--MDGEVAK   68 (122)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-------------------------------SS--SCHHHHH
T ss_pred             CCCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccc-------------------------------hh--hhhhhHH
Confidence            34689999999999999999999999999999998642                               11  1247899


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEc
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVA  144 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiA  144 (325)
                      ++.+..++.|+..  +++++|++++..++.....++..++.++  +..+ +.+|.|++|
T Consensus        69 ~l~~~l~~~GV~i--~~~~~v~~v~~~~~~~~v~~~~~~~~~~--~~~~-ie~D~vlvA  122 (122)
T d1v59a2          69 ATQKFLKKQGLDF--KLSTKVISAKRNDDKNVVEIVVEDTKTN--KQEN-LEAEVLLVA  122 (122)
T ss_dssp             HHHHHHHHTTCEE--ECSEEEEEEEEETTTTEEEEEEEETTTT--EEEE-EEESEEEEC
T ss_pred             HHHHHHHhccceE--EeCCEEEEEEEeCCCcEEEEEEEeCCCC--CeEE-EEeCEEEEC
Confidence            9999999998655  9999999998877555566677665544  4467 999999987

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.40  E-value=5.4e-14  Score=102.31  Aligned_cols=66  Identities=26%  Similarity=0.416  Sum_probs=56.9

Q ss_pred             CCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533          153 TPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       153 ~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                      +|.+||+++|  +...+|.++|+..|+++.+++||+|+|||+|+||+|+|.+|+..+++++++.|++.
T Consensus         1 iP~ipGl~~f--~~~~~G~i~Hs~~y~~~~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~   66 (107)
T d2gv8a2           1 IPNIKGLDEY--AKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGG   66 (107)
T ss_dssp             BCCCBTHHHH--HHHSTTSEEEGGGCCCGGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred             CcCCCChHHH--hccCCccEEECCcCcchhhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCc
Confidence            5889998766  00004999999999999999999999999999999999999999999988888773

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.37  E-value=2.1e-12  Score=111.86  Aligned_cols=139  Identities=14%  Similarity=0.146  Sum_probs=85.6

Q ss_pred             CCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC--C----C----------CceE------------e
Q 020533            5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY--S----Y----------DRLR------------L   56 (325)
Q Consensus         5 ~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~--~----y----------~~~~------------~   56 (325)
                      .+.+||+|||+|++||++|..|+++|.+|+|+||.+..||.-...  .    +          +...            +
T Consensus        14 ~e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG~s~~s~G~~~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~   93 (308)
T d1y0pa2          14 HDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNI   93 (308)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTC
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcceecCCCCccccchhhhhhhccchHHHHHHHHHhhhhhc
Confidence            356899999999999999999999999999999998777632110  0    0          0000            0


Q ss_pred             ecC--------------CCc----cCCCC------CCCCCC---CCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEE
Q 020533           57 HLA--------------KQF----CQLPH------LPFPSS---YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESA  109 (325)
Q Consensus        57 ~~~--------------~~~----~~~~~------~~~~~~---~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i  109 (325)
                      ..+              ..+    ..+..      ...+..   .........+...+.+.+.+.++..  +++++++++
T Consensus        94 ~d~~lv~~~~~~~~~~i~~L~~~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i--~~~~~v~~l  171 (308)
T d1y0pa2          94 NDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDL--RMNTRGIEV  171 (308)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEE--ESSEEEEEE
T ss_pred             cchHHHHHHHHhhhHHHHHHHHcCCCccccccccccccccccccccccchHHHHHHHHHHHHHhccceE--EEeeccchh
Confidence            000              000    00000      000000   0011123557777778888888655  999999998


Q ss_pred             EEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533          110 SYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (325)
Q Consensus       110 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~  149 (325)
                      ..+++....-|...+..+   .... ++|+.||+|||.++
T Consensus       172 i~~~~G~V~Gv~~~~~~~---~~~~-i~Ak~VVlAtGG~~  207 (308)
T d1y0pa2         172 LKDDKGTVKGILVKGMYK---GYYW-VKADAVILATGGFA  207 (308)
T ss_dssp             EECTTSCEEEEEEEETTT---EEEE-EECSEEEECCCCCT
T ss_pred             hhhccccccccccccccc---ceeE-eecCeEEEccCccc
Confidence            776532333466665443   2367 89999999999664

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.35  E-value=4.6e-14  Score=114.16  Aligned_cols=43  Identities=16%  Similarity=0.336  Sum_probs=39.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCCCCCCccCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSI-PYVILERENCYASIWKK   48 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~~~Gg~w~~   48 (325)
                      .+++|+||||||+||++|.+|+++|+ +|+||||++.+||.|+.
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~   46 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTS   46 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHH
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhh
Confidence            35789999999999999999999999 59999999999998764

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.34  E-value=5.1e-12  Score=95.35  Aligned_cols=98  Identities=13%  Similarity=0.171  Sum_probs=77.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||||+.|+.+|..|++.|.+|+++|+.+.+...                                ...+++.++
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~--------------------------------~~~~~~~~~   82 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLER--------------------------------VTAPPVSAF   82 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTT--------------------------------TSCHHHHHH
T ss_pred             CCEEEEECCchHHHHHHHHHHhhCcceeeeeeccccccc--------------------------------ccchhhhhh
Confidence            468999999999999999999999999999999864210                                112467888


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEE-EEEeecCCCCceeEEEEEeCeEEEccc
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWN-VKASNLLSPGREIEEYYSGRFLVVASG  146 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~-v~~~~~~~~~~~~~~~~~ad~vIiAtG  146 (325)
                      +.+..++.|+..  +++++|++++...++...+ +.+.++       .+ +.+|.||+|+|
T Consensus        83 ~~~~~~~~GV~i--~~~~~v~~i~~~~~~~~v~~v~~~~G-------~~-i~~D~vi~a~G  133 (133)
T d1q1ra2          83 YEHLHREAGVDI--RTGTQVCGFEMSTDQQKVTAVLCEDG-------TR-LPADLVIAGIG  133 (133)
T ss_dssp             HHHHHHHHTCEE--ECSCCEEEEEECTTTCCEEEEEETTS-------CE-EECSEEEECCC
T ss_pred             hhhcccccccEE--EeCCeEEEEEEeCCCceEEEEECCCC-------CE-EECCEEEEeeC
Confidence            889889999665  9999999998865444332 445543       57 89999999998

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.34  E-value=9.2e-12  Score=91.86  Aligned_cols=96  Identities=14%  Similarity=0.108  Sum_probs=77.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      +.+++|||||+.|+.+|..|.+.|.+|+|+|+.+.+...                                 -..++.++
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~---------------------------------~d~~~~~~   68 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG---------------------------------FEKQMAAI   68 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT---------------------------------SCHHHHHH
T ss_pred             CCeEEEECCCccceeeeeeecccccEEEEEEecceeccc---------------------------------ccchhHHH
Confidence            468999999999999999999999999999999875311                                 01378899


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEc
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVA  144 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiA  144 (325)
                      +.+..++.|+..  +++++|++++..+  +...+.+....    +..+ +.||.|++.
T Consensus        69 l~~~l~~~GI~i--~~~~~v~~i~~~~--~~~~v~~~~~g----~~~~-i~~D~Vlvs  117 (117)
T d1ebda2          69 IKKRLKKKGVEV--VTNALAKGAEERE--DGVTVTYEANG----ETKT-IDADYVLVT  117 (117)
T ss_dssp             HHHHHHHTTCEE--EESEEEEEEEEET--TEEEEEEEETT----EEEE-EEESEEEEC
T ss_pred             HHHHHHhcCCEE--EcCCEEEEEEEcC--CEEEEEEEeCC----CEEE-EEeEEEEEC
Confidence            999999988655  9999999998776  55677766542    3367 899999974

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.33  E-value=5.4e-12  Score=109.97  Aligned_cols=138  Identities=15%  Similarity=0.101  Sum_probs=86.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC--------CC--------Cce-------------Ee
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY--------SY--------DRL-------------RL   56 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~--------~y--------~~~-------------~~   56 (325)
                      +.+||+|||+|++||++|..|+++|.+|+|+||.+..||.-...        ..        +..             ..
T Consensus        22 et~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG~s~~s~Ggi~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~  101 (322)
T d1d4ca2          22 ETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNIN  101 (322)
T ss_dssp             EECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCS
T ss_pred             CcceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCCcccccCchhhhhcccCCCHHHHHHHHHhcccccc
Confidence            35799999999999999999999999999999998877632211        00        000             00


Q ss_pred             --------------------ecCCCcc---CCCCCCCCC---CCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEE
Q 020533           57 --------------------HLAKQFC---QLPHLPFPS---SYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESAS  110 (325)
Q Consensus        57 --------------------~~~~~~~---~~~~~~~~~---~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~  110 (325)
                                          .....+.   .+.....+.   ..........+.+.+.+.+.+.++..  +++++|+++.
T Consensus       102 d~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i--~~~t~v~~li  179 (322)
T d1d4ca2         102 DPELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDI--RLNSRVVRIL  179 (322)
T ss_dssp             CHHHHHHHHHTHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCSHHHHHHHHHHHHHHTTCEE--ETTEEEEEEE
T ss_pred             CHHHhhhhhhhhhhhhhhhhhhcccccccccccccccccccccccccchhHHHHHHHHHHHHhcCceE--EEeeeccccc
Confidence                                0000000   000000000   00112245678888888888888654  9999999987


Q ss_pred             EcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533          111 YDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (325)
Q Consensus       111 ~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~  149 (325)
                      .+++....-|...+..+   .... +.++.||+|||.++
T Consensus       180 ~d~~G~V~Gv~~~~~~~---~~~~-i~Ak~VIlAtGG~~  214 (322)
T d1d4ca2         180 EDASGKVTGVLVKGEYT---GYYV-IKADAVVIAAGGFA  214 (322)
T ss_dssp             CCSSSCCCEEEEEETTT---EEEE-EECSEEEECCCCCT
T ss_pred             ccccccccceEEEeecc---cEEE-EeCCeEEEcCCCcc
Confidence            76532223345554333   2356 89999999999664

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.33  E-value=1.5e-12  Score=111.80  Aligned_cols=39  Identities=33%  Similarity=0.408  Sum_probs=36.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCcc
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW   46 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w   46 (325)
                      .||+|||||++||++|..|+++|++|+|||+++.+||..
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~   39 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAV   39 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCceE
Confidence            379999999999999999999999999999999999843

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.32  E-value=5.5e-12  Score=109.73  Aligned_cols=139  Identities=12%  Similarity=0.137  Sum_probs=87.7

Q ss_pred             CCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC--CC--------------Cce-------------E
Q 020533            5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY--SY--------------DRL-------------R   55 (325)
Q Consensus         5 ~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~--~y--------------~~~-------------~   55 (325)
                      .+.+||+|||+|++||++|..|++.|.+|+|+||.+..||.-...  .+              +..             .
T Consensus        17 ~e~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~gG~S~~a~Ggi~a~~~~~~~~~g~~d~~~~~~~d~~~~~~~~   96 (317)
T d1qo8a2          17 SETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQ   96 (317)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTC
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCCCcccccchhhhhcccCCcHHHHHHHHHHhhccc
Confidence            456899999999999999999999999999999998776632110  00              000             0


Q ss_pred             ee--------------------cCCCc---cCCCCCCCCCC---CCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEE
Q 020533           56 LH--------------------LAKQF---CQLPHLPFPSS---YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESA  109 (325)
Q Consensus        56 ~~--------------------~~~~~---~~~~~~~~~~~---~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i  109 (325)
                      .+                    ..-.+   ........+..   .........+.+.|.+.+++.+...  +++++++.+
T Consensus        97 ~d~~lv~~~~~~a~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~g~~~g~~i~~~L~~~~~~~g~~i--~~~~~v~~l  174 (317)
T d1qo8a2          97 NDIKLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDT--RLNSRVVKL  174 (317)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCE--ECSEEEEEE
T ss_pred             cchhHHHHHHhhhhhhhhhHHHhhhcccccccccCcccccccccccccccchhhhHHHHHHhhhcccee--eeccchhhe
Confidence            00                    00000   00000000000   0112345678889999999998766  999999998


Q ss_pred             EEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533          110 SYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (325)
Q Consensus       110 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~  149 (325)
                      ..+++....-|...+.++   .... +.++.||+|||.++
T Consensus       175 ~~~~~g~V~Gv~~~~~~~---~~~~-i~Ak~VVlAtGG~~  210 (317)
T d1qo8a2         175 VVNDDHSVVGAVVHGKHT---GYYM-IGAKSVVLATGGYG  210 (317)
T ss_dssp             EECTTSBEEEEEEEETTT---EEEE-EEEEEEEECCCCCT
T ss_pred             eecccccceeeEeecccc---eEEE-EeccceEEeccccc
Confidence            776533333355555433   3356 89999999999664

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.30  E-value=1.6e-11  Score=90.13  Aligned_cols=96  Identities=15%  Similarity=0.181  Sum_probs=73.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      .+.+++|||||+.|+.+|..|++.|.+|+++|+.+.+.                               +.+  .+++.+
T Consensus        20 ~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il-------------------------------~~~--d~~~~~   66 (115)
T d1lvla2          20 LPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERIL-------------------------------PTY--DSELTA   66 (115)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSS-------------------------------TTS--CHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHhhcccceEEEeeecccc-------------------------------ccc--cchhHH
Confidence            35789999999999999999999999999999998642                               011  236888


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEccc
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASG  146 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG  146 (325)
                      ++.+..++.|+..  +++++|++++.    +. .+......    +..+ +.||.|++|+|
T Consensus        67 ~l~~~l~~~gV~i--~~~~~V~~i~~----~~-~~~~~~~~----~~~~-i~~D~vi~A~G  115 (115)
T d1lvla2          67 PVAESLKKLGIAL--HLGHSVEGYEN----GC-LLANDGKG----GQLR-LEADRVLVAVG  115 (115)
T ss_dssp             HHHHHHHHHTCEE--ETTCEEEEEET----TE-EEEECSSS----CCCE-ECCSCEEECCC
T ss_pred             HHHHHHHhhcceE--EcCcEEEEEcC----Ce-EEEEEcCC----CeEE-EEcCEEEEecC
Confidence            9999999998655  99999998852    22 23222221    1157 99999999998

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.29  E-value=9.7e-12  Score=92.58  Aligned_cols=100  Identities=13%  Similarity=0.069  Sum_probs=80.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      .+.+++|||||+.|+.+|..+++.|.+|+++|+.+.+...                                 ...++.+
T Consensus        25 ~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~---------------------------------~d~~~~~   71 (125)
T d1ojta2          25 VPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG---------------------------------ADRDLVK   71 (125)
T ss_dssp             CCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT---------------------------------SCHHHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecccccc---------------------------------chhhHHH
Confidence            3468999999999999999999999999999999865311                                 1247889


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEccc
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASG  146 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG  146 (325)
                      ++.+..++.++..  ++++++.+++..+  +...+.++..++.   ..+ +.||.|++|+|
T Consensus        72 ~l~~~l~~~gv~~--~~~~~v~~v~~~~--~g~~v~~~~~~g~---~~~-i~~D~vl~A~G  124 (125)
T d1ojta2          72 VWQKQNEYRFDNI--MVNTKTVAVEPKE--DGVYVTFEGANAP---KEP-QRYDAVLVAAG  124 (125)
T ss_dssp             HHHHHHGGGEEEE--ECSCEEEEEEEET--TEEEEEEESSSCC---SSC-EEESCEEECCC
T ss_pred             HHHHHHHHcCccc--ccCcEEEEEEEcC--CcEEEEEEeCCCC---eEE-EEcCEEEEecC
Confidence            9999999888555  9999999998876  4455666654332   256 89999999999

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.29  E-value=1e-11  Score=92.03  Aligned_cols=92  Identities=21%  Similarity=0.300  Sum_probs=74.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+++|||||+.|+.+|..|++.|.+|+++|+++.+..                                ....+++.++
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~--------------------------------~~~~~~~~~~   77 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMS--------------------------------RAAPATLADF   77 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT--------------------------------TTSCHHHHHH
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeecccccc--------------------------------ccCCHHHHHH
Confidence            46899999999999999999999999999999986421                                0112478889


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEccc
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASG  146 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG  146 (325)
                      +.+..++.|+..  +++++|+++..    +  .+++.++       .+ +.||.||+|+|
T Consensus        78 ~~~~l~~~GV~i--~~~~~v~~~~~----~--~v~l~dg-------~~-i~~D~vi~a~G  121 (121)
T d1d7ya2          78 VARYHAAQGVDL--RFERSVTGSVD----G--VVLLDDG-------TR-IAADMVVVGIG  121 (121)
T ss_dssp             HHHHHHTTTCEE--EESCCEEEEET----T--EEEETTS-------CE-EECSEEEECSC
T ss_pred             HHHHHHHCCcEE--EeCCEEEEEeC----C--EEEECCC-------CE-EECCEEEEeeC
Confidence            999999988655  99999987653    2  3666654       57 99999999998

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=99.29  E-value=3.9e-12  Score=107.30  Aligned_cols=133  Identities=13%  Similarity=0.057  Sum_probs=76.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCC--CCC---------ceEee---cCCCccCCCCCCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY--SYD---------RLRLH---LAKQFCQLPHLPFP   71 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~--~y~---------~~~~~---~~~~~~~~~~~~~~   71 (325)
                      ...+|+||||||+||++|..|+++|++|+||||++..+..+...  .++         ++...   .+...+.+......
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~   82 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTG   82 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccCCCcceeEeccCC
Confidence            45689999999999999999999999999999987654332210  000         00000   00000000000000


Q ss_pred             CC---CCCCCCHHHHHHHHHHHH-HHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533           72 SS---YPMFVSRAQFIEHLDHYV-SHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        72 ~~---~~~~~~~~~~~~yl~~~a-~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                      ..   .............+.... ....  ..+++++++++++...  ..|++++.++       .+ +++|++|.|+|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~--~~v~v~~~dG-------~~-~~~d~~v~adG~  150 (265)
T d2voua1          83 ERVGSVPADWRFTSYDSIYGGLYELFGP--ERYHTSKCLVGLSQDS--ETVQMRFSDG-------TK-AEANWVIGADGG  150 (265)
T ss_dssp             CEEEEEECCCCEEEHHHHHHHHHHHHCS--TTEETTCCEEEEEECS--SCEEEEETTS-------CE-EEESEEEECCCT
T ss_pred             ceecccccccccchhHHHHHHHHHhccc--ceeecCcEEEEEEeeC--CceEEEECCC-------CE-EEEEEEeccccc
Confidence            00   000011111111222222 2223  3459999999998765  6788988875       56 899999999997


Q ss_pred             CCC
Q 020533          148 TTN  150 (325)
Q Consensus       148 ~~~  150 (325)
                      ++.
T Consensus       151 ~s~  153 (265)
T d2voua1         151 ASV  153 (265)
T ss_dssp             TCH
T ss_pred             ccc
Confidence            664

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=6.3e-11  Score=88.25  Aligned_cols=102  Identities=13%  Similarity=0.006  Sum_probs=79.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      +++++|||||+.|+.+|..|++.|.+|+++++++.+-                               +.  -.+++.++
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l-------------------------------~~--~d~~~~~~   68 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL-------------------------------RS--FDSMISTN   68 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC-------------------------------TT--SCHHHHHH
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccc-------------------------------cc--hhhHHHHH
Confidence            4689999999999999999999999999999998642                               01  12478899


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCc--eeEEEEEeCeEEEccc
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR--EIEEYYSGRFLVVASG  146 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~--~~~~~~~ad~vIiAtG  146 (325)
                      +.+..++.|+..  ++++++++++..+  +.+.+.......+..  .... ..+|.|++|+|
T Consensus        69 ~~~~l~~~Gv~i--~~~~~v~~i~~~~--~g~~v~~~~~~~g~~~~~~~~-~~~D~vl~a~G  125 (125)
T d3grsa2          69 CTEELENAGVEV--LKFSQVKEVKKTL--SGLEVSMVTAVPGRLPVMTMI-PDVDCLLWAIG  125 (125)
T ss_dssp             HHHHHHHTTCEE--ETTEEEEEEEEET--TEEEEEEEECCTTSCCEEEEE-EEESEEEECSC
T ss_pred             HHHHHHHCCCEE--EeCCEEEEEEEcC--CeEEEEEEEccCCcCcCcccc-ccCCEEEEEeC
Confidence            999999998766  9999999998875  556665544322211  1235 78999999998

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.27  E-value=3.8e-11  Score=89.21  Aligned_cols=100  Identities=10%  Similarity=0.116  Sum_probs=79.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      .+.+++|||||..|+.+|..|.+.|.+|+|+|+++++..                               .  -.+++.+
T Consensus        24 ~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~-------------------------------~--~d~~~~~   70 (123)
T d1dxla2          24 IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP-------------------------------T--MDAEIRK   70 (123)
T ss_dssp             CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSST-------------------------------T--SCHHHHH
T ss_pred             cCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCc-------------------------------h--hhhcchh
Confidence            356899999999999999999999999999999986420                               0  1247889


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcc
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVAS  145 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAt  145 (325)
                      ++.+..++.|+..  ++++++.+++..+  +..++++....++  +... +.+|.|++|.
T Consensus        71 ~l~~~l~~~GI~i--~~~~~v~~i~~~~--~~~~v~~~~~~~g--~~~~-i~~D~vLvAA  123 (123)
T d1dxla2          71 QFQRSLEKQGMKF--KLKTKVVGVDTSG--DGVKLTVEPSAGG--EQTI-IEADVVLVSA  123 (123)
T ss_dssp             HHHHHHHHSSCCE--ECSEEEEEEECSS--SSEEEEEEESSSC--CCEE-EEESEEECCC
T ss_pred             hhhhhhhcccceE--EcCCceEEEEEcc--CeEEEEEEECCCC--eEEE-EEcCEEEEcC
Confidence            9999999999765  9999999998765  5566666554333  3367 8999999884

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.26  E-value=7.1e-11  Score=87.50  Aligned_cols=102  Identities=18%  Similarity=0.080  Sum_probs=78.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      .+.+++|||||+.|+.+|..|++.|.+|+|++++..+.                                .  -.+++.+
T Consensus        19 ~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~l~--------------------------------~--~D~~~~~   64 (122)
T d1h6va2          19 CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLR--------------------------------G--FDQDMAN   64 (122)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSST--------------------------------T--SCHHHHH
T ss_pred             CCCeEEEECCCccHHHHHHHHhhcCCeEEEEEechhhc--------------------------------c--CCHHHHH
Confidence            34689999999999999999999999999999764211                                0  1247889


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCC--CCcEEEEEeecCCCCceeEEEEEeCeEEEccc
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEA--TNMWNVKASNLLSPGREIEEYYSGRFLVVASG  146 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG  146 (325)
                      ++.+..++.|+..  +++++|++++..+.  .+...++.....++  +... ..+|.|++|+|
T Consensus        65 ~l~~~l~~~Gv~i--~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~--~~~~-~~~D~vl~AiG  122 (122)
T d1h6va2          65 KIGEHMEEHGIKF--IRQFVPTKIEQIEAGTPGRLKVTAKSTNSE--ETIE-DEFNTVLLAVG  122 (122)
T ss_dssp             HHHHHHHHTTEEE--EESCEEEEEEEEECSTTCEEEEEEECTTSC--EEEE-EEESEEECCCC
T ss_pred             HHHHHHHHCCCEE--EECCEEEEEEEecCCCccEEEEEEEECCCC--cEEE-EECCEEEEEeC
Confidence            9999999999655  99999999976542  34455666655443  4455 78999999998

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.25  E-value=3.9e-11  Score=88.41  Aligned_cols=96  Identities=13%  Similarity=0.086  Sum_probs=76.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHh---cCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSL---QSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF   83 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~---~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (325)
                      +.+++|||||+.|+.+|..|.+   .|.+|+++|+.+.+.                               +.  -.+++
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il-------------------------------~~--~d~~~   64 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL-------------------------------RG--FDSEL   64 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS-------------------------------TT--SCHHH
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceeccccccc-------------------------------cc--ccchh
Confidence            4689999999999999976654   488999999988642                               01  12478


Q ss_pred             HHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEccc
Q 020533           84 IEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASG  146 (325)
Q Consensus        84 ~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG  146 (325)
                      .+++.+..++.++..  +++++|++++.++ ++...+.++++       .+ +.||.||+|+|
T Consensus        65 ~~~~~~~l~~~GI~v--~~~~~v~~i~~~~-~g~~~v~~~~g-------~~-i~~D~Vi~a~G  116 (117)
T d1feca2          65 RKQLTEQLRANGINV--RTHENPAKVTKNA-DGTRHVVFESG-------AE-ADYDVVMLAIG  116 (117)
T ss_dssp             HHHHHHHHHHTTEEE--EETCCEEEEEECT-TSCEEEEETTS-------CE-EEESEEEECSC
T ss_pred             hHHHHHHHhhCcEEE--EcCCEEEEEEECC-CCEEEEEECCC-------CE-EEcCEEEEecC
Confidence            899999999998655  9999999998764 34556777665       56 89999999999

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.25  E-value=6.1e-11  Score=87.87  Aligned_cols=99  Identities=13%  Similarity=0.097  Sum_probs=76.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||||+.|+.+|..|++.|.+++++++.+.+.                               +  .-.+++.++
T Consensus        22 ~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l-------------------------------~--~~d~~~~~~   68 (121)
T d1mo9a2          22 GSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK-------------------------------L--IKDNETRAY   68 (121)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT-------------------------------T--CCSHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhh-------------------------------c--ccccchhhh
Confidence            4689999999999999999999999999999998642                               0  112367889


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEE-EEEeecCCCCceeEEEEEeCeEEEccc
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWN-VKASNLLSPGREIEEYYSGRFLVVASG  146 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~-v~~~~~~~~~~~~~~~~~ad~vIiAtG  146 (325)
                      +.+..++.++..  ++++++.+++.++ ++.+. +......    ...+ +.||.||+|+|
T Consensus        69 ~~~~l~~~gI~v--~~~~~v~~i~~~~-~~~~~~~~~~~~~----~~~~-i~~D~Vi~a~G  121 (121)
T d1mo9a2          69 VLDRMKEQGMEI--ISGSNVTRIEEDA-NGRVQAVVAMTPN----GEMR-IETDFVFLGLG  121 (121)
T ss_dssp             HHHHHHHTTCEE--ESSCEEEEEEECT-TSBEEEEEEEETT----EEEE-EECSCEEECCC
T ss_pred             hhhhhhccccEE--EcCCEEEEEEecC-CceEEEEEEEeCC----CCEE-EEcCEEEEEEC
Confidence            999999988665  9999999998765 33333 3222222    2267 99999999998

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.25  E-value=6.3e-11  Score=100.48  Aligned_cols=137  Identities=19%  Similarity=0.176  Sum_probs=80.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCC-CeEEEecCCCCCCccCCCC------------------------CCceEeecC--C
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSI-PYVILERENCYASIWKKYS------------------------YDRLRLHLA--K   60 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~~~Gg~w~~~~------------------------y~~~~~~~~--~   60 (325)
                      .||+||||||+||++|..|+++|+ +|+|+||++.++..++.-.                        .........  .
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~   81 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSGA   81 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEEECHHHHHHHHHcCchhhhHhhhcccccceeEcCCCC
Confidence            689999999999999999999997 8999999988765443210                        000000000  0


Q ss_pred             CccCCCCCCCCC-CCC-CCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEe
Q 020533           61 QFCQLPHLPFPS-SYP-MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSG  138 (325)
Q Consensus        61 ~~~~~~~~~~~~-~~~-~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~a  138 (325)
                      ....+....... ... ...........+............+.++++++.+...+  +.+.+++.++.+   +..+ +.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~v~v~~~~g~~---~~~~-~~a  155 (288)
T d3c96a1          82 TVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEERD--GRVLIGARDGHG---KPQA-LGA  155 (288)
T ss_dssp             EEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEEET--TEEEEEEEETTS---CEEE-EEE
T ss_pred             EEEeccccccccccCcccccchhhhHHHHHHHHHHhccCeeeecCcEEEEeeecC--CcEEEEEEcCCC---CeEE-Eee
Confidence            000000000000 000 11122222233333222222234458999999988765  678888887654   3367 999


Q ss_pred             CeEEEcccCCCC
Q 020533          139 RFLVVASGETTN  150 (325)
Q Consensus       139 d~vIiAtG~~~~  150 (325)
                      |+||.|.|.+|.
T Consensus       156 d~vi~ADG~~S~  167 (288)
T d3c96a1         156 DVLVGADGIHSA  167 (288)
T ss_dssp             SEEEECCCTTCH
T ss_pred             ceeeccCCccce
Confidence            999999997664

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.25  E-value=8.2e-12  Score=108.84  Aligned_cols=41  Identities=27%  Similarity=0.332  Sum_probs=38.1

Q ss_pred             CCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCc
Q 020533            5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI   45 (325)
Q Consensus         5 ~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~   45 (325)
                      .++++|+|||||++||++|..|+++|++|+|||+++.+||.
T Consensus        28 ~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~GG~   68 (370)
T d2iida1          28 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGR   68 (370)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTT
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCe
Confidence            34579999999999999999999999999999999999984

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.24  E-value=2.4e-11  Score=97.51  Aligned_cols=112  Identities=13%  Similarity=0.281  Sum_probs=79.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      +.+||+||||||+||.+|.+|++.|.+++|+|+.+..| .+...          .   ....+   ..++......++.+
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g-~~~~~----------~---~i~~~---~~~~~~~~~~~~~~   66 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGG-QLTTT----------T---EVENW---PGDPNDLTGPLLME   66 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTG-GGGGC----------S---BCCCS---TTCCSSCBHHHHHH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccc-ccccc----------c---hhhhh---hccccccchHHHHH
Confidence            35799999999999999999999999999999887533 22110          0   00000   01123456778888


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCC
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET  148 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~  148 (325)
                      .+...+.++++..  .+ .+|+++...+  +.+.++...        .. +.++.+++|+|..
T Consensus        67 ~~~~~~~~~~~~~--~~-~~V~~~~~~~--~~~~v~~~~--------~~-~~~~~viva~G~~  115 (190)
T d1trba1          67 RMHEHATKFETEI--IF-DHINKVDLQN--RPFRLNGDN--------GE-YTCDALIIATGAS  115 (190)
T ss_dssp             HHHHHHHHTTCEE--EC-CCEEEEECSS--SSEEEEESS--------CE-EEEEEEEECCCEE
T ss_pred             HHHHHHHhcCcEE--ec-ceeEEEecCC--CcEEEEEee--------ee-Eeeeeeeeeccee
Confidence            8888888888653  44 4677777654  567776654        45 7899999999953

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.22  E-value=8.4e-11  Score=86.39  Aligned_cols=96  Identities=16%  Similarity=0.117  Sum_probs=76.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      ..+|+|||||+.|+.+|..|++.|.+|+|+|+.+++.                               +.+  .+++.++
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il-------------------------------~~~--d~~~~~~   68 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL-------------------------------RKF--DESVINV   68 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSC-------------------------------TTS--CHHHHHH
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhcccc-------------------------------ccc--cHHHHHH
Confidence            4689999999999999999999999999999998642                               011  2478899


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcc
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVAS  145 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAt  145 (325)
                      +.+..++.|+..  +++++|++++..+ ++..++++.++       .....||.||+|.
T Consensus        69 ~~~~l~~~gV~i--~~~~~v~~i~~~~-~~~~~v~~~~G-------~~~~~~D~Vi~AI  117 (117)
T d1onfa2          69 LENDMKKNNINI--VTFADVVEIKKVS-DKNLSIHLSDG-------RIYEHFDHVIYCV  117 (117)
T ss_dssp             HHHHHHHTTCEE--ECSCCEEEEEESS-TTCEEEEETTS-------CEEEEESEEEECC
T ss_pred             HHHHHHhCCCEE--EECCEEEEEEEcC-CCeEEEEECCC-------CEEEeCCEEEEeC
Confidence            999999888665  9999999998765 35677877775       3303579999984

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.20  E-value=1.5e-11  Score=105.41  Aligned_cols=138  Identities=16%  Similarity=0.066  Sum_probs=83.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC-------CccCCC-------------------CCCceEeecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA-------SIWKKY-------------------SYDRLRLHLAK   60 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~G-------g~w~~~-------------------~y~~~~~~~~~   60 (325)
                      +++|+||||||+||++|..|++.|++|+|+||++..+       +.+..+                   .+.+.......
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~   81 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAG   81 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCceEEEECHHHHHHHHHcCchHHHHhhcccccceEEEecc
Confidence            3689999999999999999999999999999986321       111110                   01111111110


Q ss_pred             CccCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeC
Q 020533           61 QFCQLPHLP-FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGR  139 (325)
Q Consensus        61 ~~~~~~~~~-~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad  139 (325)
                      ......... ..........+..+.+.|.+.++..+...  .+...++.....+ .....|+.....    +..+ +.||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~v~~~~~g----~~~~-i~a~  153 (292)
T d1k0ia1          82 QRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATT--VYQAAEVRLHDLQ-GERPYVTFERDG----ERLR-LDCD  153 (292)
T ss_dssp             EEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEE--ESSCEEEEEECTT-SSSCEEEEEETT----EEEE-EECS
T ss_pred             cccccccccccccccceeecHHHHHHHHHHHHHhCCCcE--EEcceeeeeeeec-cCceEEEEecCC----cEEE-EEeC
Confidence            000000000 00011133467889999999888887544  6666555554433 345667665432    3367 8999


Q ss_pred             eEEEcccCCCCCC
Q 020533          140 FLVVASGETTNPF  152 (325)
Q Consensus       140 ~vIiAtG~~~~p~  152 (325)
                      +||.|+|.+|..+
T Consensus       154 ~vVgADG~~S~vR  166 (292)
T d1k0ia1         154 YIAGCDGFHGISR  166 (292)
T ss_dssp             EEEECCCTTCSTG
T ss_pred             EEEECCCCCCccc
Confidence            9999999876543

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=99.20  E-value=1.7e-11  Score=104.52  Aligned_cols=139  Identities=12%  Similarity=0.047  Sum_probs=84.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHh-cCCCeEEEecCCCCCCccCCC--CCCceEeecCCCcc----CCCCCCCCCCCCCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSL-QSIPYVILERENCYASIWKKY--SYDRLRLHLAKQFC----QLPHLPFPSSYPMFV   78 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~-~g~~v~v~e~~~~~Gg~w~~~--~y~~~~~~~~~~~~----~~~~~~~~~~~~~~~   78 (325)
                      ..+||+||||||+||++|..|++ .|++|+|||+++.+||.|...  .|+...+.......    .......+.......
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  111 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKH  111 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceeecCEEcCHHHHhhhHHHHHHHcCCceecCCccceecc
Confidence            35799999999999999999987 599999999999999987653  45555544332211    011111122222334


Q ss_pred             CHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEee-----c-CCCCceeEEEEEeCeEEEcccC
Q 020533           79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASN-----L-LSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        79 ~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~-----~-~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                      ....+..++...++..+  ..+..++.+..+......-...+....     . ......... +.++.+|+|+|.
T Consensus       112 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~gv~~~~~~~~~~~~~~~~~~~~~-~~a~~vv~a~G~  183 (278)
T d1rp0a1         112 AALFTSTIMSKLLARPN--VKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNV-MEAKIVVSSCGH  183 (278)
T ss_dssp             HHHHHHHHHHHHHTSTT--EEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEE-EEEEEEEECCCS
T ss_pred             cHHHHHHHHHHHHHhCC--CEEEeCCcceeeeecCCeEEEEEeccceeeeeeccccccccee-eccceEEECcCC
Confidence            45566666666665544  334788888777665421111111110     0 000002267 899999999995

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.20  E-value=2.3e-11  Score=104.91  Aligned_cols=59  Identities=14%  Similarity=0.070  Sum_probs=46.4

Q ss_pred             CCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCc-EEEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533           78 VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNM-WNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (325)
Q Consensus        78 ~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~-~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~  149 (325)
                      .....+...+.+.+++.++..  +++++|+++..++  ++ +.|.+.+        .+ ++||+||+|+|.++
T Consensus       145 ~~p~~l~~~l~~~a~~~gv~i--~~~~~V~~i~~~~--~~v~~V~T~~--------g~-i~a~~VV~aaG~~s  204 (305)
T d1pj5a2         145 ASAARAVQLLIKRTESAGVTY--RGSTTVTGIEQSG--GRVTGVQTAD--------GV-IPADIVVSCAGFWG  204 (305)
T ss_dssp             ECHHHHHHHHHHHHHHTTCEE--ECSCCEEEEEEET--TEEEEEEETT--------EE-EECSEEEECCGGGH
T ss_pred             cchhhhhhhHHhhhhcccccc--cCCceEEEEEEeC--CEEEEEeccc--------ee-EECCEEEEecchhH
Confidence            356778888888888888655  9999999998875  44 4466544        57 99999999999764

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.19  E-value=2.8e-11  Score=97.31  Aligned_cols=117  Identities=9%  Similarity=0.132  Sum_probs=78.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      .++||+||||||+|+.||.+|++.|.+++|+|+..........            ..............+......++..
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~el~~   71 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGG------------QLTTTTDVENFPGFPEGILGVELTD   71 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTC------------GGGGCSEECCSTTCTTCEEHHHHHH
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeeccccccccc------------ccccchhhhccccccccccchHHHH
Confidence            3579999999999999999999999999999987643211000            0000000011111233456788999


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCC
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET  148 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~  148 (325)
                      .+++.+++++...  .+ .+|.+++...  ..+.+.+..        .. +.+|.+++++|..
T Consensus        72 ~~~~q~~~~g~~i--~~-~~V~~~~~~~--~~~~v~~~~--------~~-~~~~~~~~a~g~~  120 (192)
T d1vdca1          72 KFRKQSERFGTTI--FT-ETVTKVDFSS--KPFKLFTDS--------KA-ILADAVILAIGAV  120 (192)
T ss_dssp             HHHHHHHHTTCEE--EC-CCCCEEECSS--SSEEEECSS--------EE-EEEEEEEECCCEE
T ss_pred             HHHHHHHhhccee--ee-eeEEeccccc--CcEEecccc--------ee-eeeeeEEEEeeee
Confidence            9998899998653  44 4577777654  556666554        56 7899999999954

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.19  E-value=3.6e-13  Score=113.93  Aligned_cols=39  Identities=18%  Similarity=0.395  Sum_probs=36.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK   47 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~   47 (325)
                      ||++||||||+|+.+|..+++.|.+|+|+|+.. +||+|.
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~~-~GGtc~   40 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKSR-LGGTCV   40 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TTHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecCC-CCCeEE
Confidence            799999999999999999999999999999964 898774

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=8.8e-11  Score=88.92  Aligned_cols=96  Identities=15%  Similarity=0.082  Sum_probs=77.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHh----cCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSL----QSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQ   82 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~----~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (325)
                      ..+++|||||+.|+.+|..|.+    .|.+|+++|+++.+...                                .-.++
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~--------------------------------~~~~~   84 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGK--------------------------------ILPEY   84 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTT--------------------------------TSCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcc--------------------------------cCCHH
Confidence            3589999999999999998864    58999999998864210                                01236


Q ss_pred             HHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEccc
Q 020533           83 FIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASG  146 (325)
Q Consensus        83 ~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG  146 (325)
                      +.+++.+.+++.|+..  +++++|.+++.++  +...+++.++       .+ +.||.||+|+|
T Consensus        85 ~~~~~~~~l~~~GV~~--~~~~~V~~i~~~~--~~~~v~l~~G-------~~-i~aD~Vi~A~G  136 (137)
T d1m6ia2          85 LSNWTMEKVRREGVKV--MPNAIVQSVGVSS--GKLLIKLKDG-------RK-VETDHIVAAVG  136 (137)
T ss_dssp             HHHHHHHHHHTTTCEE--ECSCCEEEEEEET--TEEEEEETTS-------CE-EEESEEEECCC
T ss_pred             HHHHHHHHHHhCCcEE--EeCCEEEEEEecC--CEEEEEECCC-------CE-EECCEEEEeec
Confidence            7888999999998765  9999999998765  6667887765       57 89999999999

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.18  E-value=2.4e-11  Score=89.38  Aligned_cols=65  Identities=22%  Similarity=0.307  Sum_probs=49.5

Q ss_pred             CCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHHH
Q 020533          153 TPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYL  230 (325)
Q Consensus       153 ~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~~  230 (325)
                      +|++||.+..          +.+.+..+..  .+++|+|||+|.+|+|+|..+++.|.+||++.|++ .++|..+..+
T Consensus         1 ~P~IpG~e~~----------~ts~~~~~l~--~p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~-~il~~~d~~~   65 (117)
T d1onfa2           1 FPPVKGIENT----------ISSDEFFNIK--ESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGN-RILRKFDESV   65 (117)
T ss_dssp             CCSCTTGGGC----------EEHHHHTTCC--CCSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSS-SSCTTSCHHH
T ss_pred             CcccCCHhHc----------CchhHHhccC--CCCEEEEECCchHHHHHHHHHHhccccceeeehhc-cccccccHHH
Confidence            4788887642          4554444322  26899999999999999999999999999999998 4556544433

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1.7e-11  Score=107.53  Aligned_cols=38  Identities=32%  Similarity=0.452  Sum_probs=36.3

Q ss_pred             eEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCcc
Q 020533            9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW   46 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w   46 (325)
                      ||+|||||++||++|..|+++|++|+|||+++.+||..
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GGr~   38 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRT   38 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBTTC
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccee
Confidence            79999999999999999999999999999999999944

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.16  E-value=5.6e-11  Score=88.16  Aligned_cols=88  Identities=17%  Similarity=0.208  Sum_probs=70.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHHH
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHL   87 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl   87 (325)
                      .+++|||||+.|+.+|..|++.|.+|+++|+++.+.+                                  -.+++.+++
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~----------------------------------~d~~~~~~~   78 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG----------------------------------LDEELSNMI   78 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT----------------------------------CCHHHHHHH
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEeccccccC----------------------------------CCHHHHHHH
Confidence            5899999999999999999999999999999875320                                  124788889


Q ss_pred             HHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEccc
Q 020533           88 DHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASG  146 (325)
Q Consensus        88 ~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG  146 (325)
                      .+..++.|+..  ++++++.+++.+     . +.. ++       .. +.+|.||+|+|
T Consensus        79 ~~~l~~~GV~~--~~~~~v~~~~~~-----~-v~~-~~-------~~-i~~D~vi~a~G  120 (122)
T d1xhca2          79 KDMLEETGVKF--FLNSELLEANEE-----G-VLT-NS-------GF-IEGKVKICAIG  120 (122)
T ss_dssp             HHHHHHTTEEE--ECSCCEEEECSS-----E-EEE-TT-------EE-EECSCEEEECC
T ss_pred             HHHHHHCCcEE--EeCCEEEEEeCC-----E-EEe-CC-------CE-EECCEEEEEEE
Confidence            99999888554  999999887532     1 222 22       57 89999999999

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.15  E-value=1.3e-10  Score=86.28  Aligned_cols=95  Identities=18%  Similarity=0.258  Sum_probs=73.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      ...+|+|||||+.|+.+|..|++.|.+|+++|+.+.+-.                               .+ -.+++.+
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~-------------------------------~~-~d~~~~~   76 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLG-------------------------------VY-LDKEFTD   76 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT-------------------------------TT-CCHHHHH
T ss_pred             CCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcccc-------------------------------cc-cchhhHH
Confidence            346899999999999999999999999999999986310                               00 1246888


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcc
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVAS  145 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAt  145 (325)
                      ++.+..++.++..  ++++++.+++.++  ....+ ..++       .+ +.||.||+|.
T Consensus        77 ~~~~~l~~~gv~~--~~~~~v~~i~~~~--~~~~v-~~dg-------~~-i~~D~vi~aI  123 (123)
T d1nhpa2          77 VLTEEMEANNITI--ATGETVERYEGDG--RVQKV-VTDK-------NA-YDADLVVVAV  123 (123)
T ss_dssp             HHHHHHHTTTEEE--EESCCEEEEECSS--BCCEE-EESS-------CE-EECSEEEECS
T ss_pred             HHHHHhhcCCeEE--EeCceEEEEEcCC--CEEEE-EeCC-------CE-EECCEEEEEC
Confidence            9999999888655  9999999997542  22333 3333       57 8999999983

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=4.7e-11  Score=95.05  Aligned_cols=111  Identities=14%  Similarity=0.189  Sum_probs=70.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHHH
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHL   87 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl   87 (325)
                      |||+||||||+|+.||..+++.|.+++|+|++  .||.+... +   .      ...++..       ......++...+
T Consensus         2 yDViIIGgGpaGl~AAi~aar~G~~v~iie~~--~gg~~~~~-~---~------~~~~~~~-------~~~~~~~~~~~~   62 (184)
T d1fl2a1           2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGER--FGGQILDT-V---D------IENYISV-------PKTEGQKLAGAL   62 (184)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSS--TTGGGGGC-C---E------ECCBTTB-------SSEEHHHHHHHH
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe--cCCccccc-c---c------ceecccc-------chhhhHHHHHHH
Confidence            79999999999999999999999999999975  56654321 0   0      0001110       112346777777


Q ss_pred             HHHHHHcCCCceeeeCeEEEEEEEcCCCC-cEEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533           88 DHYVSHFNIGPSIRYQRSVESASYDEATN-MWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        88 ~~~a~~~~l~~~i~~~~~V~~i~~~~~~~-~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                      +..+++++...  .....+..+....... .+.....+.       .+ +.++.+++++|.
T Consensus        63 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~g~  113 (184)
T d1fl2a1          63 KVHVDEYDVDV--IDSQSASKLIPAAVEGGLHQIETASG-------AV-LKARSIIVATGA  113 (184)
T ss_dssp             HHHHHTSCEEE--ECSCCEEEEECCSSTTCCEEEEETTS-------CE-EEEEEEEECCCE
T ss_pred             HHHhhheecee--eccceeeeecccccccceeeeeeecc-------ee-eecccccccccc
Confidence            77788776443  4445555554433211 222222221       46 789999999994

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.11  E-value=6.9e-10  Score=81.45  Aligned_cols=95  Identities=12%  Similarity=0.036  Sum_probs=74.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhc---CCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQ---SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF   83 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~---g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (325)
                      +.+++|||||+.|+.+|..|...   +.+|+++|+.+.+-                               +.  -.+++
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL-------------------------------~~--~d~~~   66 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL-------------------------------RG--FDHTL   66 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS-------------------------------TT--SCHHH
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh-------------------------------cc--cchHH
Confidence            46899999999999999776654   55799999987531                               01  12478


Q ss_pred             HHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcc
Q 020533           84 IEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVAS  145 (325)
Q Consensus        84 ~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAt  145 (325)
                      .+++.+..++.|+..  ++++++++++... ++...++++++       .+ +.||.||+|.
T Consensus        67 ~~~l~~~l~~~GV~v--~~~~~v~~ie~~~-~~~~~v~~~~G-------~~-i~~D~Vi~AI  117 (117)
T d1aoga2          67 REELTKQLTANGIQI--LTKENPAKVELNA-DGSKSVTFESG-------KK-MDFDLVMMAI  117 (117)
T ss_dssp             HHHHHHHHHHTTCEE--EESCCEEEEEECT-TSCEEEEETTS-------CE-EEESEEEECS
T ss_pred             HHHHHHHHHhcCcEE--EcCCEEEEEEEcC-CCeEEEEECCC-------cE-EEeCEEEEeC
Confidence            899999999998665  9999999998754 45677888765       56 8999999983

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.11  E-value=6.3e-11  Score=97.14  Aligned_cols=42  Identities=14%  Similarity=0.271  Sum_probs=39.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK   47 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~   47 (325)
                      .+|||+||||||+|+++|..+++.|.+|+|||+++.+||.|.
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~   43 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCL   43 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeee
Confidence            469999999999999999999999999999999999999765

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=99.10  E-value=1.9e-10  Score=93.78  Aligned_cols=119  Identities=18%  Similarity=0.133  Sum_probs=67.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC-CCCCccCCCCCCceEeecCCCccCCCCCC-CCCCCCCCCCHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN-CYASIWKKYSYDRLRLHLAKQFCQLPHLP-FPSSYPMFVSRAQFI   84 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~-~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   84 (325)
                      .|||+|||||++|+.||..+++.|.++.|++++. .+|......          .......... ...+ ..-+....+.
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp----------~~gg~~kg~l~reid-~kG~av~a~r   70 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPP----------KPPFPPGSLLERAYD-PKDERVWAFH   70 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCC----------CSCCCTTCHHHHHCC-TTCCCHHHHH
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCC----------ccccCCCcceeeeee-ccchhhhhHH
Confidence            5899999999999999999999999999999873 333221110          0000000000 0000 0111111222


Q ss_pred             HHHHHHHHHc-CCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCC
Q 020533           85 EHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET  148 (325)
Q Consensus        85 ~yl~~~a~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~  148 (325)
                      .-.++..+.. ++.   .+..+|+++..++ +....|.+.++       .+ +.|+.||+|||.+
T Consensus        71 aQ~k~~l~~~~nL~---i~q~~V~dli~e~-~~v~gV~t~~G-------~~-~~AkaVILtTGTF  123 (230)
T d2cula1          71 ARAKYLLEGLRPLH---LFQATATGLLLEG-NRVVGVRTWEG-------PP-ARGEKVVLAVGSF  123 (230)
T ss_dssp             HHHHHHHHTCTTEE---EEECCEEEEEEET-TEEEEEEETTS-------CC-EECSEEEECCTTC
T ss_pred             HHHHHHHhhhcCHH---HHhccceeeEecc-cceeeEEeccc-------cE-EEEeEEEEccCcc
Confidence            2233333332 332   4456677776654 23344666654       56 8999999999965

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.08  E-value=3.5e-11  Score=88.43  Aligned_cols=45  Identities=27%  Similarity=0.189  Sum_probs=38.9

Q ss_pred             CCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHHH
Q 020533          185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYL  230 (325)
Q Consensus       185 ~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~~  230 (325)
                      .+++++|||+|++|+|+|..+++.|.+||++.|++ +++|..+..+
T Consensus        20 ~p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~-~~l~~~d~~~   64 (116)
T d1gesa2          20 LPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFD-APLPSFDPMI   64 (116)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSSTTSCHHH
T ss_pred             CCCEEEEECCChhhHHHHHHhhccccEEEEEeecc-hhhhhcchhh
Confidence            36899999999999999999999999999999999 5666554443

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.07  E-value=7e-12  Score=103.82  Aligned_cols=41  Identities=22%  Similarity=0.251  Sum_probs=36.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCCCCccCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKK   48 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~~~Gg~w~~   48 (325)
                      .+|+||||||+||+||.+|++.  |++|+|||+.+.+||.++.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~   44 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRF   44 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHH
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehh
Confidence            4899999999999999999876  6799999999999997653

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.07  E-value=1e-09  Score=95.62  Aligned_cols=64  Identities=8%  Similarity=0.149  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCC
Q 020533           80 RAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (325)
Q Consensus        80 ~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~  149 (325)
                      ...+...+.+.+++.++..  +.++.++++..++ .....+...+..++  +... +.++.||+|||.+.
T Consensus       157 G~~i~~~l~~~~~~~gv~i--~~~~~~~~li~~~-~~v~g~~~~~~~~g--~~~~-i~Ak~VvlATGG~~  220 (336)
T d2bs2a2         157 GHTMLFAVANECLKLGVSI--QDRKEAIALIHQD-GKCYGAVVRDLVTG--DIIA-YVAKGTLIATGGYG  220 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCEE--ECSEEEEEEEEET-TEEEEEEEEETTTC--CEEE-EECSEEEECCCCCG
T ss_pred             HHHHHHHHHHHHHhccccc--cceeeeeeccccc-ccccceeEEeccCC--cEEE-EecCeEEEeccccc
Confidence            4567777888888888655  9999999887764 23334555544333  4467 89999999999654

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.06  E-value=1.1e-10  Score=86.26  Aligned_cols=84  Identities=20%  Similarity=0.172  Sum_probs=63.0

Q ss_pred             CCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechh-hHHHHHHHHhhCCHHHHHHHHHHHHHHHhcCccccCC
Q 020533          185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSRE-MVYLGVVLFKYVPFGWVDTLMVMLSRLVYGDLSKYGI  263 (325)
Q Consensus       185 ~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  263 (325)
                      .+++++|||+|.+|+|+|..|++.|.+||++.|++ +++|+. +..++.                               
T Consensus        29 ~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~-~~l~~~~~~~~~~-------------------------------   76 (121)
T d1d7ya2          29 PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQP-RLMSRAAPATLAD-------------------------------   76 (121)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-STTTTTSCHHHHH-------------------------------
T ss_pred             cCCeEEEECcchhHHHHHHHhhcccceEEEEeecc-ccccccCCHHHHH-------------------------------
Confidence            46899999999999999999999999999999999 455532 112111                               


Q ss_pred             CCCCCCchhhhhccCceeeeChhhhhhhhCCceEEecC--CeeeecCceEEeeecceecCCC
Q 020533          264 PKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQSEQQ--NSQIGAQTRTELLLKTWLGTDT  323 (325)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~~~~~--i~~~~~~~~v~~~dg~~~~~d~  323 (325)
                                            -+.+.+++.+|+++.+  ++++.+ +.+.+.||+.+++|+
T Consensus        77 ----------------------~~~~~l~~~GV~i~~~~~v~~~~~-~~v~l~dg~~i~~D~  115 (121)
T d1d7ya2          77 ----------------------FVARYHAAQGVDLRFERSVTGSVD-GVVLLDDGTRIAADM  115 (121)
T ss_dssp             ----------------------HHHHHHHTTTCEEEESCCEEEEET-TEEEETTSCEEECSE
T ss_pred             ----------------------HHHHHHHHCCcEEEeCCEEEEEeC-CEEEECCCCEEECCE
Confidence                                  1233455556666655  777766 468999999999985

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.06  E-value=6.8e-11  Score=98.42  Aligned_cols=44  Identities=16%  Similarity=0.314  Sum_probs=40.7

Q ss_pred             CCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCC
Q 020533            5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK   48 (325)
Q Consensus         5 ~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~   48 (325)
                      ...|||+|||||++||++|..|+++|++|+|+|+++.+||.++.
T Consensus         3 ~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~GG~~~t   46 (297)
T d2bcgg1           3 DTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAAS   46 (297)
T ss_dssp             CCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCcceEE
Confidence            45699999999999999999999999999999999999997653

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.05  E-value=9.3e-10  Score=92.57  Aligned_cols=43  Identities=19%  Similarity=0.235  Sum_probs=39.8

Q ss_pred             CCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccC
Q 020533            5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK   47 (325)
Q Consensus         5 ~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~   47 (325)
                      +..||++|||||++|+.+|..|++.|.+++++|+.+.+||+|.
T Consensus        40 ~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c~   82 (261)
T d1mo9a1          40 PREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCP   82 (261)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHH
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccccccc
Confidence            3568999999999999999999999999999999999999764

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=99.00  E-value=9.9e-10  Score=95.67  Aligned_cols=44  Identities=23%  Similarity=0.311  Sum_probs=39.9

Q ss_pred             CCCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCC
Q 020533            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (325)
Q Consensus         1 M~~~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg   44 (325)
                      |+.+.+++||+|||+|++||++|..++++|.+|+|+||.+..||
T Consensus         1 ~~~~~~~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~gg   44 (330)
T d1neka2           1 MKLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRS   44 (330)
T ss_dssp             CCCCEEEESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGGGS
T ss_pred             CCCCcccCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCCCC
Confidence            66677789999999999999999999999999999999886654

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=3.4e-10  Score=98.50  Aligned_cols=55  Identities=24%  Similarity=0.297  Sum_probs=44.6

Q ss_pred             CCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecC
Q 020533            5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLA   59 (325)
Q Consensus         5 ~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~   59 (325)
                      .++.+|+|||||++||+||..|+++|++|+|||+++++||.......++..++..
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr~~t~~~~g~~~d~G   57 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLG   57 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCEEEETTEEEESS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcccEEEEEeCCEEEECC
Confidence            3457899999999999999999999999999999999999544433445554443

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.99  E-value=7.3e-11  Score=87.50  Aligned_cols=60  Identities=20%  Similarity=0.326  Sum_probs=45.0

Q ss_pred             CCCCCCCCCccccccCCCCCccEEecCCCCCCC-----CCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          150 NPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGK-----PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       150 ~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      +|+.|++||.+.          ++......+..     ...+++++|||+|++|+|+|..|++.|.+||+++|++
T Consensus         1 R~r~p~ipG~e~----------~~t~~~~~d~~~l~~~~~~~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~   65 (122)
T d1xhca2           1 RAREPQIKGKEY----------LLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGA   65 (122)
T ss_dssp             EECCCCSBTGGG----------EECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCCcCCCCccc----------eEccCCHHHHHHHHHHhhcCCcEEEECCcHHHHHHHHHhhcccceEEEEeccc
Confidence            367789999753          23332222111     1135899999999999999999999999999999998

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.98  E-value=2.5e-10  Score=97.84  Aligned_cols=52  Identities=29%  Similarity=0.349  Sum_probs=45.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLA   59 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~   59 (325)
                      ++|+|||||++||+||+.|+++|++|+|||+++.+||..+...+++..++..
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~g~~~d~G   53 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEG   53 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEETTEEEESS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcCceEEeccCCEEEecC
Confidence            6899999999999999999999999999999999999766555566665543

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.95  E-value=2.5e-10  Score=95.72  Aligned_cols=51  Identities=33%  Similarity=0.473  Sum_probs=43.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCC-CeEEEecCCCCCCccCCCCCCceEeec
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSI-PYVILERENCYASIWKKYSYDRLRLHL   58 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~~~Gg~w~~~~y~~~~~~~   58 (325)
                      .||+|||||++||++|..|+++|+ +|+|||+++.+||.++...+++..++.
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~GG~~~t~~~~g~~~d~   52 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVEL   52 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEEETTEEEES
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCCceEEEeccCCEEEec
Confidence            379999999999999999999997 699999999999987665555555443

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.94  E-value=8e-10  Score=81.14  Aligned_cols=59  Identities=24%  Similarity=0.290  Sum_probs=46.4

Q ss_pred             ccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHHH
Q 020533          170 GEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYL  230 (325)
Q Consensus       170 g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~~  230 (325)
                      ++++.+.+..+. ...+++++|||+|++|+|+|..+++.|.+||++.|.+ .++|..+.++
T Consensus         7 ~~i~~s~~~l~~-~~~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~-~il~~~d~~~   65 (117)
T d1ebda2           7 NRILDSTGALNL-GEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAG-EILSGFEKQM   65 (117)
T ss_dssp             SSEECHHHHHTC-SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-SSSTTSCHHH
T ss_pred             CCEEChhHhhCh-hhcCCeEEEECCCccceeeeeeecccccEEEEEEecc-eecccccchh
Confidence            356666655543 3446999999999999999999999999999999999 5666554443

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.90  E-value=4.2e-10  Score=96.70  Aligned_cols=48  Identities=19%  Similarity=0.239  Sum_probs=42.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceE
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLR   55 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~   55 (325)
                      +||+|||||+|||++|..|+++|++|+|||+++++||.+......+..
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~~~t~~~~g~~   49 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGIQ   49 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEEETTEE
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccceEEeCcCCEE
Confidence            699999999999999999999999999999999999987654344443

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.89  E-value=7.2e-10  Score=82.33  Aligned_cols=60  Identities=28%  Similarity=0.402  Sum_probs=55.4

Q ss_pred             CCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533          155 DIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       155 ~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                      ++||.+.|      .|.-+|.+..++...+++|+|+|||+|++|+|.|..|++.+.+||+++|++.
T Consensus         2 ~ipge~~~------~gkgV~yca~cD~~~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~   61 (126)
T d1trba2           2 GLPSEEAF------KGRGVSACATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG   61 (126)
T ss_dssp             CCHHHHHT------BTTTEESCHHHHGGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             cCCCHHHh------cCCCEEEEEecchHHhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccc
Confidence            57899999      8999998877887888999999999999999999999999999999999983

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.88  E-value=3.3e-09  Score=78.42  Aligned_cols=86  Identities=20%  Similarity=0.153  Sum_probs=65.7

Q ss_pred             CCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechh-hHHHHHHHHhhCCHHHHHHHHHHHHHHHhcCccccC
Q 020533          184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSRE-MVYLGVVLFKYVPFGWVDTLMVMLSRLVYGDLSKYG  262 (325)
Q Consensus       184 ~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  262 (325)
                      ..+++|+|||+|.+|+|+|..+++.|.+||++.|.+ +++|+. +.+++                               
T Consensus        28 ~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~-~~l~~~~d~~~~-------------------------------   75 (123)
T d1nhpa2          28 PEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILD-RPLGVYLDKEFT-------------------------------   75 (123)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-STTTTTCCHHHH-------------------------------
T ss_pred             cCCCEEEEECChHHHHHHHHHhhccceEEEEEEecC-cccccccchhhH-------------------------------
Confidence            357899999999999999999999999999999998 444432 11111                               


Q ss_pred             CCCCCCCchhhhhccCceeeeChhhhhhhhCCceEEecC--CeeeecCce--EEeeecceecCCC
Q 020533          263 IPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQSEQQ--NSQIGAQTR--TELLLKTWLGTDT  323 (325)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~~~~~--i~~~~~~~~--v~~~dg~~~~~d~  323 (325)
                                            ..+.+.+++.+|+++.+  ++++.+++.  ..++||+.+++|.
T Consensus        76 ----------------------~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~dg~~i~~D~  118 (123)
T d1nhpa2          76 ----------------------DVLTEEMEANNITIATGETVERYEGDGRVQKVVTDKNAYDADL  118 (123)
T ss_dssp             ----------------------HHHHHHHHTTTEEEEESCCEEEEECSSBCCEEEESSCEEECSE
T ss_pred             ----------------------HHHHHHhhcCCeEEEeCceEEEEEcCCCEEEEEeCCCEEECCE
Confidence                                  11344566777888887  888887763  3589999999984

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.87  E-value=3.4e-10  Score=93.31  Aligned_cols=43  Identities=14%  Similarity=0.243  Sum_probs=40.1

Q ss_pred             CCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccC
Q 020533            5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK   47 (325)
Q Consensus         5 ~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~   47 (325)
                      .++|||+||||||+|++||.+|++.|.+|+|||+++.+||+|.
T Consensus         3 ~~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG~~~   45 (233)
T d1v59a1           3 NKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCL   45 (233)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred             CcccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcceEeE
Confidence            4579999999999999999999999999999999999999765

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.86  E-value=7.7e-09  Score=89.11  Aligned_cols=38  Identities=21%  Similarity=0.330  Sum_probs=33.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYAS   44 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~~~Gg   44 (325)
                      ++||+|||+|++||++|..+.+.  |.+|+|+||....+|
T Consensus         5 ~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~~g   44 (311)
T d1kf6a2           5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRS   44 (311)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGS
T ss_pred             ecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCCCC
Confidence            58999999999999999999986  679999999875543

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.85  E-value=3e-09  Score=85.46  Aligned_cols=110  Identities=13%  Similarity=0.099  Sum_probs=67.9

Q ss_pred             eEEEECCChHHHHHHHHHHhcC--CCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            9 EVIMVGAGTSGLATAACLSLQS--IPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g--~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      +|+|||||++|+.+|..|++.+  .+|+++|+++.+.       |..+.+.  ..   +.        ......+++..+
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~-------~~~~~~~--~~---l~--------~~~~~~~~~~~~   61 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFIS-------FLSAGMQ--LY---LE--------GKVKDVNSVRYM   61 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSS-------BCGGGHH--HH---HT--------TSSCCGGGSBSC
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCccc-------ccccCcc--hh---hc--------ccccchHHHHHh
Confidence            6999999999999999999874  4799999987642       1100000  00   00        000011112222


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                      ..+..++.++..  +++++|.+++.++  +.  |++.+..++  +... +.+|.+|+|+|.
T Consensus        62 ~~~~l~~~gi~v--~~~~~V~~i~~~~--~~--v~~~~~~~g--~~~~-~~~D~li~a~G~  113 (198)
T d1nhpa1          62 TGEKMESRGVNV--FSNTEITAIQPKE--HQ--VTVKDLVSG--EERV-ENYDKLIISPGA  113 (198)
T ss_dssp             CHHHHHHTTCEE--EETEEEEEEETTT--TE--EEEEETTTC--CEEE-EECSEEEECCCE
T ss_pred             hHHHHHHCCcEE--EEeeceeeEeecc--cc--ceeeecccc--cccc-cccceeeEeecc
Confidence            233445567554  9999999998654  33  554443333  3367 899999999994

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=9.1e-11  Score=95.85  Aligned_cols=129  Identities=14%  Similarity=0.173  Sum_probs=72.0

Q ss_pred             CCCCeEEEECCChHHHHHHHHHHhcCC--CeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCC---------CCCCC
Q 020533            5 AAGVEVIMVGAGTSGLATAACLSLQSI--PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHL---------PFPSS   73 (325)
Q Consensus         5 ~~~~~v~IIGaG~~Gl~~a~~L~~~g~--~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~---------~~~~~   73 (325)
                      +.+++++|||||++|+.+|..|++.+.  +|+++++.+...       |..  ...++.+......         .....
T Consensus         2 p~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~p-------y~r--~~Ls~~~~~~~~~~~~~~~~~~~~~~~   72 (213)
T d1m6ia1           2 PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELP-------YMR--PPLSKELWFSDDPNVTKTLRFKQWNGK   72 (213)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCC-------BCS--GGGGTGGGCC--CTHHHHCEEECTTSC
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCC-------ccc--cccceecccccCchhhhhhhhhhcccc
Confidence            345789999999999999999999876  599999876532       111  0000000000000         00000


Q ss_pred             -CC-CCCCHH-HHHHHHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCC
Q 020533           74 -YP-MFVSRA-QFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (325)
Q Consensus        74 -~~-~~~~~~-~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~  150 (325)
                       .. .+.+.+ .........+++.++  .++++++|++++.++  .  +|++.++       .+ +.||.||+|+|  +.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~gI--~~~~g~~V~~id~~~--~--~V~l~dG-------~~-i~~d~lViAtG--~~  136 (213)
T d1m6ia1          73 ERSIYFQPPSFYVSAQDLPHIENGGV--AVLTGKKVVQLDVRD--N--MVKLNDG-------SQ-ITYEKCLIATG--GT  136 (213)
T ss_dssp             EEESBSSCGGGSBCTTTTTTSTTCEE--EEEETCCEEEEEGGG--T--EEEETTS-------CE-EEEEEEEECCC--EE
T ss_pred             hhhhhcCChhhhhhhhhHHHHHHCCe--EEEeCCEEEEeeccC--c--eeeeccc-------ee-eccceEEEeee--ee
Confidence             00 000000 000001112334554  458999999997764  2  5777665       57 89999999999  55


Q ss_pred             CCCCCCCC
Q 020533          151 PFTPDIRG  158 (325)
Q Consensus       151 p~~p~~~g  158 (325)
                      |..+++++
T Consensus       137 ~~~~~l~~  144 (213)
T d1m6ia1         137 EPNVELAK  144 (213)
T ss_dssp             EECCTTHH
T ss_pred             cchhhhhh
Confidence            54444443

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.84  E-value=1.7e-09  Score=79.26  Aligned_cols=86  Identities=16%  Similarity=0.107  Sum_probs=63.0

Q ss_pred             CCCCeEEEECcCCCHHHHHHHHhhcc---CeEEEEEecCCeeechhhHHHHHHHHhhCCHHHHHHHHHHHHHHHhcCccc
Q 020533          184 YGGKNVLVVGSGNSGMEIALDLANHA---AKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDTLMVMLSRLVYGDLSK  260 (325)
Q Consensus       184 ~~~~~v~VvG~G~s~~e~a~~l~~~~---~~v~~~~r~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  260 (325)
                      ..+++++|||+|.+|+|+|..+..++   .+||++.|++ +++|..+..++..                           
T Consensus        18 ~~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~-~iL~~~d~~~~~~---------------------------   69 (117)
T d1aoga2          18 EPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE-MILRGFDHTLREE---------------------------   69 (117)
T ss_dssp             SCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS-SSSTTSCHHHHHH---------------------------
T ss_pred             hcCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc-hhhcccchHHHHH---------------------------
Confidence            34689999999999999998888775   4699999998 5667654444322                           


Q ss_pred             cCCCCCCCCchhhhhccCceeeeChhhhhhhhCCceEEecC--Ceeeec--Cc--eEEeeecceecCCC
Q 020533          261 YGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQSEQQ--NSQIGA--QT--RTELLLKTWLGTDT  323 (325)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~~~~~--i~~~~~--~~--~v~~~dg~~~~~d~  323 (325)
                                                +.+.+++.+|+++.+  ++++..  ++  .+.+.||+.+++|+
T Consensus        70 --------------------------l~~~l~~~GV~v~~~~~v~~ie~~~~~~~~v~~~~G~~i~~D~  112 (117)
T d1aoga2          70 --------------------------LTKQLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDL  112 (117)
T ss_dssp             --------------------------HHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESE
T ss_pred             --------------------------HHHHHHhcCcEEEcCCEEEEEEEcCCCeEEEEECCCcEEEeCE
Confidence                                      344466667777776  677643  32  47899999999884

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.83  E-value=4.6e-09  Score=81.08  Aligned_cols=73  Identities=22%  Similarity=0.185  Sum_probs=56.8

Q ss_pred             cccCCCCCCCC-CCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEE--CcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533          144 ASGETTNPFTP-DIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVV--GSGNSGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       144 AtG~~~~p~~p-~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~Vv--G~G~s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                      |||  +.|..| ++||.+.-      ...++.+.+........++.++|+  |+|.+|+|+|..|++.|.+||++.+.+ 
T Consensus         4 atG--~~~~~~~pipG~~~~------~~~v~t~~d~l~~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~-   74 (156)
T d1djqa2           4 TDG--TNCLTHDPIPGADAS------LPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-   74 (156)
T ss_dssp             SSC--CCTTTSSCCTTCCTT------STTEECHHHHHHTCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-
T ss_pred             CCC--CCCCCCCCCCCccCC------CCEEECHHHHhcCccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCC-
Confidence            789  667776 79998753      335676666655555667777777  999999999999999999999999988 


Q ss_pred             eeech
Q 020533          221 HVLSR  225 (325)
Q Consensus       221 ~~~p~  225 (325)
                      .+++.
T Consensus        75 ~~~~~   79 (156)
T d1djqa2          75 LANYM   79 (156)
T ss_dssp             TTTHH
T ss_pred             ccccc
Confidence            44443

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.82  E-value=1.5e-10  Score=90.66  Aligned_cols=102  Identities=21%  Similarity=0.286  Sum_probs=62.5

Q ss_pred             eEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHHHH
Q 020533            9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHLD   88 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~   88 (325)
                      +|+|||||++|+.+|..|++ +.+|+|+|+++...       |...      .+        +...........+..+..
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~-------~~~~------~~--------~~~~~~~~~~~~~~~~~~   59 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPY-------YSKP------ML--------SHYIAGFIPRNRLFPYSL   59 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCC-------CCST------TH--------HHHHTTSSCGGGGCSSCH
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEecccccc-------cccc------ch--------hhhhhhhhhhhhhhHHHH
Confidence            79999999999999999965 77999999887532       1000      00        000001111222223334


Q ss_pred             HHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccC
Q 020533           89 HYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (325)
Q Consensus        89 ~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~  147 (325)
                      ++.++.++.  ++++++++.++...   .  +...++       .+ +.+|.+|+|+|.
T Consensus        60 ~~~~~~~v~--~~~~~~v~~i~~~~---~--~~~~~~-------~~-i~~D~li~a~G~  103 (167)
T d1xhca1          60 DWYRKRGIE--IRLAEEAKLIDRGR---K--VVITEK-------GE-VPYDTLVLATGA  103 (167)
T ss_dssp             HHHHHHTEE--EECSCCEEEEETTT---T--EEEESS-------CE-EECSEEEECCCE
T ss_pred             HHHHhccce--eeeecccccccccc---c--cccccc-------cc-cccceeEEEEEe
Confidence            445555644  48888888886432   1  333332       56 899999999994

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.81  E-value=1.4e-08  Score=89.86  Aligned_cols=111  Identities=18%  Similarity=0.281  Sum_probs=70.0

Q ss_pred             CCCCCCCCeEEEECCChHHHHHHHHHHh------cCCCeEEEecCCCCCC------ccCCC-------------CC----
Q 020533            1 MKEQAAGVEVIMVGAGTSGLATAACLSL------QSIPYVILERENCYAS------IWKKY-------------SY----   51 (325)
Q Consensus         1 M~~~~~~~~v~IIGaG~~Gl~~a~~L~~------~g~~v~v~e~~~~~Gg------~w~~~-------------~y----   51 (325)
                      |..+...+||+||||||||+++|+.|++      .|++|+|+||...+|.      ....+             ..    
T Consensus        26 m~~~~~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~~Ggvl~~~~l~~l~p~~~~~~~~~~~~  105 (380)
T d2gmha1          26 MERFAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTP  105 (380)
T ss_dssp             CCCCEEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEE
T ss_pred             cccccccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCccccccccHHHHHHHccchhhhccccccc
Confidence            3344456999999999999999999997      7999999999987753      22110             00    


Q ss_pred             ---CceEeecCCCccCCCCCC---CCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCeEEEEEEEcC
Q 020533           52 ---DRLRLHLAKQFCQLPHLP---FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDE  113 (325)
Q Consensus        52 ---~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~yl~~~a~~~~l~~~i~~~~~V~~i~~~~  113 (325)
                         ....+........+...+   .............+..++...++..+...  .....+..+..++
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ae~~g~~~--~~~~~~~~~l~~~  171 (380)
T d2gmha1         106 VTEDRFGILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEV--YPGYAAAEILFHE  171 (380)
T ss_dssp             CCEEEEEEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEE--ETTCCEEEEEECT
T ss_pred             eecceEEEeeccccccccccCchhcccccceeehhhHHHHHHHHHHhhcccee--eeecceeeeeecc
Confidence               011111111111111111   11111233577889999999999988655  7777777777654

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.81  E-value=1.8e-09  Score=93.30  Aligned_cols=41  Identities=20%  Similarity=0.267  Sum_probs=38.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK   47 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~   47 (325)
                      .++|+|||||++||++|..|+++|++|+|+|+++++||.+.
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~~~   42 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSY   42 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGC
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCeee
Confidence            46899999999999999999999999999999999999764

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.79  E-value=2e-09  Score=79.73  Aligned_cols=64  Identities=17%  Similarity=0.147  Sum_probs=52.0

Q ss_pred             cEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHHHHHHHHh
Q 020533          171 EVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFK  236 (325)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~~~~~~~~  236 (325)
                      +++.+.+..+ ....+++++|||+|.+|+|+|..+++.|.+||++.|++ +++|..+.+++..+.+
T Consensus        12 ~i~ts~~~l~-l~~~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~-~il~~~d~~~~~~l~~   75 (125)
T d1ojta2          12 RIIDSSGALA-LKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMD-GLMQGADRDLVKVWQK   75 (125)
T ss_dssp             TEECHHHHTT-CCCCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSS-SSSTTSCHHHHHHHHH
T ss_pred             cEEcHHHhhC-ccccCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeec-cccccchhhHHHHHHH
Confidence            4566665554 34456999999999999999999999999999999999 7889887777655443

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.77  E-value=1.1e-09  Score=81.20  Aligned_cols=62  Identities=29%  Similarity=0.451  Sum_probs=57.4

Q ss_pred             CCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533          153 TPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       153 ~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                      .+++||.+.|      .|+-+|.+..++...+++|+|+|||+|++|+|-|..|++.+.+||+++|++.
T Consensus         3 ~L~ipge~~~------~gkGV~yca~cD~~~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~   64 (126)
T d1fl2a2           3 NMNVPGEDQY------RTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE   64 (126)
T ss_dssp             CCCCTTTTTT------BTTTEESCHHHHGGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSS
T ss_pred             cCCCCCHHHh------cCCCEEEEEecChhhcCCceEEEEeCCHHHHHHHHhhhccCCceEEEecccc
Confidence            4579999999      8999999888788889999999999999999999999999999999999984

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.77  E-value=9e-09  Score=75.30  Aligned_cols=86  Identities=16%  Similarity=0.132  Sum_probs=64.1

Q ss_pred             CCCCeEEEECcCCCHHHHHHHHhhc---cCeEEEEEecCCeeechhhHHHHHHHHhhCCHHHHHHHHHHHHHHHhcCccc
Q 020533          184 YGGKNVLVVGSGNSGMEIALDLANH---AAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDTLMVMLSRLVYGDLSK  260 (325)
Q Consensus       184 ~~~~~v~VvG~G~s~~e~a~~l~~~---~~~v~~~~r~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  260 (325)
                      ..+++++|||+|.+|+|+|..+++.   |.+|+++.|++ +++|..+.+++.                            
T Consensus        16 ~~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~-~il~~~d~~~~~----------------------------   66 (117)
T d1feca2          16 EAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGD-MILRGFDSELRK----------------------------   66 (117)
T ss_dssp             SCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSS-SSSTTSCHHHHH----------------------------
T ss_pred             ccCCeEEEECCChHHHHHHHHhHhhcccccccceecccc-cccccccchhhH----------------------------
Confidence            3468999999999999999877665   77999999998 555654443322                            


Q ss_pred             cCCCCCCCCchhhhhccCceeeeChhhhhhhhCCceEEecC--CeeeecC--c--eEEeeecceecCCC
Q 020533          261 YGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQSEQQ--NSQIGAQ--T--RTELLLKTWLGTDT  323 (325)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~~~~~--i~~~~~~--~--~v~~~dg~~~~~d~  323 (325)
                                               .+.+.+++.+|+++.+  +++++++  +  .+.+.||..+++|.
T Consensus        67 -------------------------~~~~~l~~~GI~v~~~~~v~~i~~~~~g~~~v~~~~g~~i~~D~  110 (117)
T d1feca2          67 -------------------------QLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDV  110 (117)
T ss_dssp             -------------------------HHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESE
T ss_pred             -------------------------HHHHHHhhCcEEEEcCCEEEEEEECCCCEEEEEECCCCEEEcCE
Confidence                                     2344566677888887  7888643  3  47899999999884

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.77  E-value=1.1e-08  Score=84.13  Aligned_cols=35  Identities=23%  Similarity=0.364  Sum_probs=33.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      .|||+||||||+|++||.++++.|.+|+|+|+.+.
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~   37 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTP   37 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            58999999999999999999999999999998764

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.76  E-value=1.1e-08  Score=87.92  Aligned_cols=40  Identities=23%  Similarity=0.417  Sum_probs=34.5

Q ss_pred             CCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCc
Q 020533            5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI   45 (325)
Q Consensus         5 ~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~   45 (325)
                      ...+||+|||+|++||++|..+++.| +|+|+||.+..||.
T Consensus         5 ~~~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~gG~   44 (305)
T d1chua2           5 EHSCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEGS   44 (305)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTTC--
T ss_pred             cccCCEEEECccHHHHHHHHHhhcCC-CEEEEECCCCCCCc
Confidence            34689999999999999999999888 99999999877663

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.75  E-value=1.2e-08  Score=74.79  Aligned_cols=60  Identities=17%  Similarity=0.119  Sum_probs=48.2

Q ss_pred             cEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHHHHH
Q 020533          171 EVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGV  232 (325)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~~~~  232 (325)
                      .++.+.+..+. +..+++++|||+|.+|+|+|..+++.|.+||++.|++ .++|..+.+++.
T Consensus         8 ~v~~s~~~l~l-~~~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~-~ll~~~d~ei~~   67 (119)
T d3lada2           8 VIVDSTGALDF-QNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMD-KFLPAVDEQVAK   67 (119)
T ss_dssp             SEEEHHHHTSC-SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-SSSTTSCHHHHH
T ss_pred             EEEchhHhhCc-ccCCCeEEEECCChHHHHHHHHHHHcCCceEEEEeec-ccCCcccchhHH
Confidence            46666665543 3456999999999999999999999999999999998 567776665544

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.74  E-value=4e-09  Score=79.06  Aligned_cols=40  Identities=25%  Similarity=0.464  Sum_probs=36.3

Q ss_pred             CCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeech
Q 020533          185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSR  225 (325)
Q Consensus       185 ~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~  225 (325)
                      .+++++|||+|.+|+|+|..+++.|.+||++.+.+ +++|+
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~-~~l~~   73 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAA-RVLER   73 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-STTTT
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecc-ccccc
Confidence            47999999999999999999999999999999999 45554

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.72  E-value=3.9e-08  Score=85.91  Aligned_cols=39  Identities=18%  Similarity=0.308  Sum_probs=34.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHh----cCCCeEEEecCCCCCCc
Q 020533            7 GVEVIMVGAGTSGLATAACLSL----QSIPYVILERENCYASI   45 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~----~g~~v~v~e~~~~~Gg~   45 (325)
                      .+||+|||+|++||+||..|++    .|.+|+|+||.+..||.
T Consensus        21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg~   63 (356)
T d1jnra2          21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSG   63 (356)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTCS
T ss_pred             ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCCCh
Confidence            4799999999999999999975    69999999998876653

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.72  E-value=5.8e-09  Score=85.25  Aligned_cols=41  Identities=20%  Similarity=0.271  Sum_probs=36.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCcc
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW   46 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w   46 (325)
                      ++|||+||||||+||+||.+|++.|.+|+|||+....++.+
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~~~~   42 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKT   42 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSB
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCCccc
Confidence            57999999999999999999999999999999977555443

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.71  E-value=3.6e-09  Score=86.99  Aligned_cols=41  Identities=22%  Similarity=0.408  Sum_probs=38.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCcc
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW   46 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w   46 (325)
                      ..|||+||||||+||++|.+|++.|.+|+|||+.+.+||.+
T Consensus         5 ~dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG~~   45 (229)
T d1ojta1           5 AEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVC   45 (229)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHH
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCCee
Confidence            35899999999999999999999999999999999999864

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.70  E-value=5.6e-09  Score=76.99  Aligned_cols=64  Identities=17%  Similarity=0.145  Sum_probs=50.9

Q ss_pred             cEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHHHHHHHHh
Q 020533          171 EVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFK  236 (325)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~~~~~~~~  236 (325)
                      +++.|.+..+. ...+++++|||+|.+|+|+|..++++|.+||++.|++ +++|..+.+++..+.+
T Consensus         9 ~v~ts~~~~~l-~~~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~-~~l~~~d~ei~~~l~~   72 (122)
T d1v59a2           9 KIVSSTGALSL-KEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQP-QIGASMDGEVAKATQK   72 (122)
T ss_dssp             SEECHHHHTTC-SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSSSSSCHHHHHHHHH
T ss_pred             EEEehHHhhCc-ccCCCeEEEECCCchHHHHHHHHHhhCcceeEEEecc-ccchhhhhhhHHHHHH
Confidence            46666554443 2346899999999999999999999999999999999 6888877776655433

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.70  E-value=3.2e-09  Score=78.50  Aligned_cols=64  Identities=14%  Similarity=0.181  Sum_probs=50.3

Q ss_pred             cEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHHHHHHHHh
Q 020533          171 EVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFK  236 (325)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~~~~~~~~  236 (325)
                      .++.+.+..+ ....+++++|||+|.+|+|+|..+++.|.+||+++|++ .++|..+..+...+.+
T Consensus        11 ~v~ts~~~l~-l~~~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~-~~l~~~d~~~~~~l~~   74 (123)
T d1dxla2          11 KIVSSTGALA-LSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFAS-EIVPTMDAEIRKQFQR   74 (123)
T ss_dssp             SEECHHHHTT-CSSCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSS-SSSTTSCHHHHHHHHH
T ss_pred             eEEeHHHhhC-ccccCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEcc-ccCchhhhcchhhhhh
Confidence            4565555544 33457999999999999999999999999999999999 5778777766554433

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.68  E-value=1.5e-08  Score=78.58  Aligned_cols=55  Identities=29%  Similarity=0.439  Sum_probs=46.8

Q ss_pred             CCCCCCCCccccccCCCCCccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEE
Q 020533          151 PFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTS  213 (325)
Q Consensus       151 p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~  213 (325)
                      |+.|++||.+.        ..++++.++.......||+|+|||+|++|+|+|..+++.|.+++
T Consensus         2 Pr~p~IpG~d~--------~~V~~a~d~L~~~~~~gkrVvVIGgG~~g~d~a~~~~r~G~~~~   56 (162)
T d1ps9a2           2 PRTPPIDGIDH--------PKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTS   56 (162)
T ss_dssp             ECCCCCBTTTS--------TTEEEHHHHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGG
T ss_pred             CCCCCCCCCCC--------CCeEEHHHHhhCccccCCceEEEcCchhHHHHHHHHHHcCCccc
Confidence            78899999874        35788777776677789999999999999999999999997643

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=8.6e-09  Score=76.34  Aligned_cols=49  Identities=27%  Similarity=0.259  Sum_probs=42.6

Q ss_pred             CCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHHHHHHH
Q 020533          185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVL  234 (325)
Q Consensus       185 ~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~~~~~~  234 (325)
                      .+|+++|||+|++|+|+|..+++.|.+||+++|++ +++|..+.+++..+
T Consensus        21 ~pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~-~~l~~~d~~~~~~~   69 (125)
T d3grsa2          21 LPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHD-KVLRSFDSMISTNC   69 (125)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSCTTSCHHHHHHH
T ss_pred             cCCEEEEEcCCccHHHHHHHHhcCCcEEEEEeecc-ccccchhhHHHHHH
Confidence            36899999999999999999999999999999999 67787766665544

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=98.63  E-value=9.1e-08  Score=83.96  Aligned_cols=33  Identities=21%  Similarity=0.364  Sum_probs=31.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      .||+|||+|++|+.+|.+|+++|++|+|+|+..
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   35 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ   35 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecCC
Confidence            489999999999999999999999999999964

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.63  E-value=1.9e-08  Score=83.68  Aligned_cols=39  Identities=26%  Similarity=0.329  Sum_probs=34.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCc
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI   45 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~   45 (325)
                      +++|+|||||++||++|..|+++|.+|+|+||+...++.
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~~~~~   44 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVS   44 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCTT
T ss_pred             CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCCCCCc
Confidence            468999999999999999999999999999998754443

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=98.62  E-value=1.7e-09  Score=85.26  Aligned_cols=36  Identities=31%  Similarity=0.550  Sum_probs=32.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC--CeEEEecCCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI--PYVILERENCY   42 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~--~v~v~e~~~~~   42 (325)
                      .++|+|||||++|+.+|..|++.+.  +|+++|+++..
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~   39 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDY   39 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCE
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCcc
Confidence            4689999999999999999999874  78999998854

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.56  E-value=2.3e-09  Score=84.98  Aligned_cols=108  Identities=17%  Similarity=0.103  Sum_probs=62.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHHH
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHL   87 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl   87 (325)
                      .+|+|||||++|+.+|..|++.|.++.|++..+.....+..   +.    .+..+...            ....   ...
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~---~~----l~~~~~~~------------~~~~---~~~   61 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDR---PP----LSKDFMAH------------GDAE---KIR   61 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCS---GG----GGTTHHHH------------CCGG---GSB
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhh---HH----Hhhhhhhh------------hhhh---hHH
Confidence            45999999999999999999999888777765543211110   00    00000000            0000   000


Q ss_pred             HHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEcccCCCCCCC
Q 020533           88 DHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (325)
Q Consensus        88 ~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG~~~~p~~  153 (325)
                      .....  .....++.++++.+++.+.    ..+.+.++       .+ +.+|.||+|+|  ..|+.
T Consensus        62 ~~~~~--~~~i~~~~~~~v~~i~~~~----~~~~~~~g-------~~-~~~D~vi~a~G--~~p~~  111 (183)
T d1d7ya1          62 LDCKR--APEVEWLLGVTAQSFDPQA----HTVALSDG-------RT-LPYGTLVLATG--AAPRA  111 (183)
T ss_dssp             CCGGG--STTCEEEETCCEEEEETTT----TEEEETTS-------CE-EECSEEEECCC--EEECC
T ss_pred             HHHhh--cCCeEEEEecccccccccc----ceeEecCC-------cE-eeeeeEEEEEE--EEccc
Confidence            00011  2234458888888876543    34666554       57 89999999999  55543

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=98.56  E-value=9.7e-08  Score=83.91  Aligned_cols=34  Identities=29%  Similarity=0.455  Sum_probs=32.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERE   39 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~   39 (325)
                      ..+||+|||+|++|+.+|.+|++.|++|+|+|+.
T Consensus         6 ~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   39 (370)
T d3coxa1           6 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMG   39 (370)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            4589999999999999999999999999999985

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.53  E-value=2.6e-08  Score=72.53  Aligned_cols=63  Identities=25%  Similarity=0.295  Sum_probs=50.0

Q ss_pred             ccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHHHHHHH
Q 020533          170 GEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVL  234 (325)
Q Consensus       170 g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~~~~~~  234 (325)
                      ++++.+.+.... ...+++++|||+|.+|+|+|..+++.|.+||++.|.+ .++|..+.+++..+
T Consensus         6 ~~~~~s~~~l~~-~~~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~-~il~~~d~~~~~~l   68 (115)
T d1lvla2           6 GPVISSTEALAP-KALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARE-RILPTYDSELTAPV   68 (115)
T ss_dssp             TTEECHHHHTCC-SSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSS-SSSTTSCHHHHHHH
T ss_pred             CcEECChHHhCc-ccCCCeEEEECCCHHHHHHHHHHhhcccceEEEeeec-cccccccchhHHHH
Confidence            456666555443 3346999999999999999999999999999999999 67887766665443

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.52  E-value=2e-08  Score=81.87  Aligned_cols=42  Identities=19%  Similarity=0.359  Sum_probs=37.7

Q ss_pred             CCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccC
Q 020533            5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK   47 (325)
Q Consensus         5 ~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~   47 (325)
                      +.++|++||||||+|+.+|..+++.|.+|+|+|++. +||+|.
T Consensus         3 ~~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~-~GG~c~   44 (220)
T d1lvla1           3 TIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQA-LGGTCL   44 (220)
T ss_dssp             CEECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC-TTHHHH
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC-CCCccc
Confidence            446899999999999999999999999999999874 788754

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.52  E-value=2.6e-08  Score=81.02  Aligned_cols=40  Identities=25%  Similarity=0.359  Sum_probs=36.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK   47 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~   47 (325)
                      +|||+||||||+|+++|.++++.|.+|+|+|+.. +||+|.
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~-~GG~~~   42 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN-LGGVCL   42 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecCC-CCccee
Confidence            5899999999999999999999999999999976 677654

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.51  E-value=2.3e-08  Score=74.20  Aligned_cols=60  Identities=25%  Similarity=0.310  Sum_probs=52.4

Q ss_pred             CCCCccc----cccCCCCCccEEecCCCCCC--CCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533          155 DIRGLCS----FCSSATGTGEVIHSTQYKNG--KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       155 ~~~g~~~----~~~~~~~~g~~~~~~~~~~~--~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                      .+||.++    |      .|+-++.+..++.  ..+++|+|+|||+|++|+|-|..|++.+.+||+++|++.
T Consensus         3 ~~pGe~E~~~~f------~gkGVsyca~CDg~a~~frgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~   68 (130)
T d1vdca2           3 SFVGSGEVLGGF------WNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDA   68 (130)
T ss_dssp             CCBTCSSSSSCC------BTTTEESCHHHHTTSGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             CCCccccccccc------cCCcEEEEEEecCchHHhCCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEeccc
Confidence            5677655    7      7888998887774  378999999999999999999999999999999999983

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=8.6e-08  Score=71.95  Aligned_cols=86  Identities=17%  Similarity=0.194  Sum_probs=62.0

Q ss_pred             CCCeEEEECcCCCHHHHHHHHhh----ccCeEEEEEecCCeeechhhHHHHHHHHhhCCHHHHHHHHHHHHHHHhcCccc
Q 020533          185 GGKNVLVVGSGNSGMEIALDLAN----HAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDTLMVMLSRLVYGDLSK  260 (325)
Q Consensus       185 ~~~~v~VvG~G~s~~e~a~~l~~----~~~~v~~~~r~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  260 (325)
                      .+++++|||+|.+|+|+|..|++    .|.+|+++.+++ +++++.           +|....                 
T Consensus        36 ~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~-~~l~~~-----------~~~~~~-----------------   86 (137)
T d1m6ia2          36 EVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEK-GNMGKI-----------LPEYLS-----------------   86 (137)
T ss_dssp             HCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSS-STTTTT-----------SCHHHH-----------------
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccc-cCCccc-----------CCHHHH-----------------
Confidence            36899999999999999999964    578999999988 444422           221111                 


Q ss_pred             cCCCCCCCCchhhhhccCceeeeChhhhhhhhCCceEEecC--CeeeecCc---eEEeeecceecCCC
Q 020533          261 YGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQSEQQ--NSQIGAQT---RTELLLKTWLGTDT  323 (325)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~~~~~--i~~~~~~~---~v~~~dg~~~~~d~  323 (325)
                                              .-..+.+++.+|+++.+  |++++.++   .+.+.||+.+++|+
T Consensus        87 ------------------------~~~~~~l~~~GV~~~~~~~V~~i~~~~~~~~v~l~~G~~i~aD~  130 (137)
T d1m6ia2          87 ------------------------NWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDH  130 (137)
T ss_dssp             ------------------------HHHHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESE
T ss_pred             ------------------------HHHHHHHHhCCcEEEeCCEEEEEEecCCEEEEEECCCCEEECCE
Confidence                                    11334566677788776  77776643   57899999999985

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.44  E-value=3.3e-08  Score=72.72  Aligned_cols=51  Identities=25%  Similarity=0.190  Sum_probs=42.3

Q ss_pred             CCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHHHHHHHHh
Q 020533          184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFK  236 (325)
Q Consensus       184 ~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~~~~~~~~  236 (325)
                      ..+++++|||+|++|+|+|..+++.|.+||++.|+  .++|..+.+++..+.+
T Consensus        18 ~~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~--~~l~~~D~~~~~~l~~   68 (122)
T d1h6va2          18 YCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS--ILLRGFDQDMANKIGE   68 (122)
T ss_dssp             SCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS--SSSTTSCHHHHHHHHH
T ss_pred             cCCCeEEEECCCccHHHHHHHHhhcCCeEEEEEec--hhhccCCHHHHHHHHH
Confidence            35689999999999999999999999999999975  3778777766654433

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=7.9e-08  Score=78.08  Aligned_cols=39  Identities=18%  Similarity=0.335  Sum_probs=35.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCcc
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW   46 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w   46 (325)
                      .|||+||||||+|+++|..+++.|.+|+|+|+.. +||.+
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~~-~GG~c   41 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAELGARAAVVESHK-LGGTC   41 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCEEEEEeccC-CCCcc
Confidence            5899999999999999999999999999999864 66654

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.41  E-value=4.8e-08  Score=71.72  Aligned_cols=51  Identities=18%  Similarity=0.162  Sum_probs=42.7

Q ss_pred             CCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeechhhHHHHHH
Q 020533          182 KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVV  233 (325)
Q Consensus       182 ~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~~~~~~~  233 (325)
                      ...++++++|||+|++|+|+|..|++.|.+|+++.|++ .++|..+..++..
T Consensus        18 ~~~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~-~~l~~~d~~~~~~   68 (121)
T d1mo9a2          18 DYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTE-PLKLIKDNETRAY   68 (121)
T ss_dssp             CSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC-TTTTCCSHHHHHH
T ss_pred             hhCCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccc-hhhcccccchhhh
Confidence            34468999999999999999999999999999999998 5667666555443

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.41  E-value=5.6e-08  Score=79.92  Aligned_cols=39  Identities=10%  Similarity=0.276  Sum_probs=32.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhcC---CCeEEEecCCCCCCccC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQS---IPYVILERENCYASIWK   47 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g---~~v~v~e~~~~~Gg~w~   47 (325)
                      .+|+|||+||+|++||.++++.+   .+|+++|+. .+||+|.
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~-~~GG~cl   43 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCD-GIGGAAV   43 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESS-CTTHHHH
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecC-CCCceee
Confidence            48999999999999999887765   579999985 5888764

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.40  E-value=9.5e-08  Score=82.07  Aligned_cols=42  Identities=29%  Similarity=0.324  Sum_probs=38.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCCCCccCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKK   48 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~--g~~v~v~e~~~~~Gg~w~~   48 (325)
                      .+||+||||||+||++|..|+++  |++|+|||+++.+||.+..
T Consensus        50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (311)
T d2gjca1          50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWL   93 (311)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcceeEe
Confidence            57999999999999999999965  9999999999999997654

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.31  E-value=2.3e-07  Score=72.97  Aligned_cols=36  Identities=22%  Similarity=0.211  Sum_probs=32.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY   42 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~   42 (325)
                      ..+|+|||||++|+.+|..|++.|.+++|++..+..
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~   38 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDAT   38 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCcc
Confidence            358999999999999999999999999888877754

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.30  E-value=1.8e-07  Score=77.05  Aligned_cols=36  Identities=14%  Similarity=0.321  Sum_probs=32.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSI-PYVILERENC   41 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~~   41 (325)
                      ++|||+||||||+|+++|.++++.|. +|+|+|+...
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~   38 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKH   38 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEecc
Confidence            57999999999999999999999986 6889998764

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.29  E-value=2.6e-07  Score=75.61  Aligned_cols=35  Identities=17%  Similarity=0.291  Sum_probs=30.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~   40 (325)
                      +.|||+||||||+|+++|.++++.|. +|+|+|+..
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~   37 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQM   37 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeec
Confidence            46999999999999999999999886 678888753

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.27  E-value=3.7e-07  Score=79.87  Aligned_cols=38  Identities=18%  Similarity=0.229  Sum_probs=34.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA   43 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~G   43 (325)
                      .+|||||||+|++|+.+|.+|++.|++|+|+|+.....
T Consensus         3 ~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~~   40 (379)
T d2f5va1           3 IKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDS   40 (379)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS
T ss_pred             CcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCCC
Confidence            46899999999999999999999999999999976543

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.26  E-value=2.9e-07  Score=79.91  Aligned_cols=38  Identities=29%  Similarity=0.488  Sum_probs=33.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHH-----hcCCCeEEEecCCCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLS-----LQSIPYVILERENCYA   43 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~-----~~g~~v~v~e~~~~~G   43 (325)
                      ..|||+||||||+||++|..|+     +.|++|+||||++.+.
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~   48 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKV   48 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCC
Confidence            3589999999999999999996     5799999999987543

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.21  E-value=3.6e-06  Score=64.22  Aligned_cols=71  Identities=7%  Similarity=-0.028  Sum_probs=52.2

Q ss_pred             CCeEEEE--CCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHH
Q 020533            7 GVEVIMV--GAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI   84 (325)
Q Consensus         7 ~~~v~II--GaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (325)
                      ...++|+  |+|..|+.+|..|+++|.+|+++++.+.++..-                                 ..+..
T Consensus        39 ~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~~---------------------------------~~~~~   85 (156)
T d1djqa2          39 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMH---------------------------------FTLEY   85 (156)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHHH---------------------------------HTTCH
T ss_pred             CCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcccccc---------------------------------chhHH
Confidence            3456666  999999999999999999999999988654110                                 00123


Q ss_pred             HHHHHHHHHcCCCceeeeCeEEEEEEEc
Q 020533           85 EHLDHYVSHFNIGPSIRYQRSVESASYD  112 (325)
Q Consensus        85 ~yl~~~a~~~~l~~~i~~~~~V~~i~~~  112 (325)
                      ..+.+.+++.++..  ++++++.+++.+
T Consensus        86 ~~~~~~l~~~GV~i--~~~~~v~~i~~~  111 (156)
T d1djqa2          86 PNMMRRLHELHVEE--LGDHFCSRIEPG  111 (156)
T ss_dssp             HHHHHHHHHTTCEE--EETEEEEEEETT
T ss_pred             HHHHHHHhhccceE--EeccEEEEecCc
Confidence            45556666677555  999999998753

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=5.6e-06  Score=63.47  Aligned_cols=28  Identities=32%  Similarity=0.445  Sum_probs=25.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCe
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPY   33 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v   33 (325)
                      ..++|+|||||..|+-+|..+.+.|.++
T Consensus        28 ~gkrVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          28 VGNKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             CCSEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             cCCceEEEcCchhHHHHHHHHHHcCCcc
Confidence            4579999999999999999999998754

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.13  E-value=2.8e-05  Score=56.82  Aligned_cols=100  Identities=22%  Similarity=0.256  Sum_probs=71.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      ..++|+|||+|-+++-.|..|.+...+|+++-|.+.+                                   ...+.+.+
T Consensus        26 ~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~-----------------------------------~~~~~~~~   70 (126)
T d1trba2          26 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF-----------------------------------RAEKILIK   70 (126)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC-----------------------------------CCCHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecccc-----------------------------------cchhHHHH
Confidence            3578999999999999999999999999999887642                                   12234556


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCcE-EEEEeecCCCCceeEEEEEeCeEEEccc
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMW-NVKASNLLSPGREIEEYYSGRFLVVASG  146 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~-~v~~~~~~~~~~~~~~~~~ad~vIiAtG  146 (325)
                      .+.+..+.-++.  +.+++.+.++.-++  ... .|++++..+++ +.++ +.+|.|+++.|
T Consensus        71 ~~~~~~~~~~i~--~~~~~~v~~i~G~~--~~v~~v~l~~~~~~e-~~~~-l~~dgvFv~iG  126 (126)
T d1trba2          71 RLMDKVENGNII--LHTNRTLEEVTGDQ--MGVTGVRLRDTQNSD-NIES-LDVAGLFVAIG  126 (126)
T ss_dssp             HHHHHHHTSSEE--EECSCEEEEEEECS--SSEEEEEEECCTTCC-CCEE-EECSEEEECSC
T ss_pred             HHHHhhccccee--EecceEEEEEECCC--CceEEEEEEECCCCc-eEEE-EECCEEEEEeC
Confidence            666655555543  48899999887653  333 36666643331 2367 89999999987

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.09  E-value=5.4e-05  Score=55.21  Aligned_cols=96  Identities=18%  Similarity=0.189  Sum_probs=69.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   86 (325)
                      .++|+|||+|-+.+-.|..|++...+|+++-|.+.+-                                   ..    +.
T Consensus        30 gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~-----------------------------------~~----~~   70 (126)
T d1fl2a2          30 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK-----------------------------------AD----QV   70 (126)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC-----------------------------------SC----HH
T ss_pred             CceEEEEeCCHHHHHHHHhhhccCCceEEEecccccc-----------------------------------cc----cc
Confidence            5789999999999999999999988999998876421                                   00    22


Q ss_pred             HHHHHHHcCCCceeeeCeEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEEeCeEEEccc
Q 020533           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASG  146 (325)
Q Consensus        87 l~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIiAtG  146 (325)
                      +.+.+...+ .+.+.+++++.++.-++ ...-.+++.+..++  +..+ +.+|.|+++.|
T Consensus        71 ~~~~~~~~~-~I~v~~~~~v~~i~G~~-~~v~~v~l~~~~tg--e~~~-l~vdgvFv~IG  125 (126)
T d1fl2a2          71 LQDKLRSLK-NVDIILNAQTTEVKGDG-SKVVGLEYRDRVSG--DIHN-IELAGIFVQIG  125 (126)
T ss_dssp             HHHHHHTCT-TEEEESSEEEEEEEESS-SSEEEEEEEETTTC--CEEE-EECSEEEECSC
T ss_pred             ccccccccc-ceeEEcCcceEEEEccc-cceeeEEEEECCCC--CEEE-EECCEEEEEeC
Confidence            333333332 35569999999987653 12334666665444  4578 99999999988

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.92  E-value=5.9e-06  Score=63.50  Aligned_cols=33  Identities=30%  Similarity=0.655  Sum_probs=29.0

Q ss_pred             CeEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                      .||+|||+|.+|+|+|..|++ +.+||++.|.+.
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~   33 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPV   33 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSSSS
T ss_pred             CeEEEECCcHHHHHHHHHHHc-CCCEEEEecccc
Confidence            379999999999999999976 569999998873

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.89  E-value=0.00016  Score=54.53  Aligned_cols=34  Identities=21%  Similarity=0.249  Sum_probs=30.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCC-eEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIP-YVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~-v~v~e~~~   40 (325)
                      +.+|+|||||-+|+-+|..+.++|.+ |+++.|.+
T Consensus        45 ~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          45 RGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            45899999999999999999999875 78888775

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=97.89  E-value=4.6e-06  Score=72.77  Aligned_cols=34  Identities=35%  Similarity=0.494  Sum_probs=32.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      .||++|||+|++|+.+|.+|++.|.+|+|+|+..
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~   35 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGG   35 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCeEEEEEccC
Confidence            5899999999999999999999999999999874

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.85  E-value=1.2e-05  Score=60.92  Aligned_cols=39  Identities=26%  Similarity=0.357  Sum_probs=33.4

Q ss_pred             CCCCCCeEEEECcCCCHHHHHHHHhhccC-eEEEEEecCC
Q 020533          182 KPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSPV  220 (325)
Q Consensus       182 ~~~~~~~v~VvG~G~s~~e~a~~l~~~~~-~v~~~~r~~~  220 (325)
                      ....+++|+|||+|++|+|+|..+.++|+ +|++++|++.
T Consensus        41 ~p~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~   80 (153)
T d1gtea3          41 LPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGF   80 (153)
T ss_dssp             CCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCG
T ss_pred             cccCCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCCh
Confidence            34457899999999999999999999975 5899999874

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.84  E-value=0.00033  Score=51.08  Aligned_cols=97  Identities=15%  Similarity=0.212  Sum_probs=68.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCCCCceEeecCCCccCCCCCCCCCCCCCCCCHHHHHH
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (325)
                      ..++|+|||+|-+++-.|..|++.--+|+++-|.+.+..                                   .    +
T Consensus        33 rgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra-----------------------------------~----~   73 (130)
T d1vdca2          33 RNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA-----------------------------------S----K   73 (130)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS-----------------------------------C----H
T ss_pred             CCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccccc-----------------------------------c----h
Confidence            357999999999999999999999999999988875321                                   0    2


Q ss_pred             HHHHHHHHcCCCceeeeCeEEEEEEEcCCCCc-EEEEEeecCCCCceeEEEEEeCeEEEcc
Q 020533           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNM-WNVKASNLLSPGREIEEYYSGRFLVVAS  145 (325)
Q Consensus        86 yl~~~a~~~~l~~~i~~~~~V~~i~~~~~~~~-~~v~~~~~~~~~~~~~~~~~ad~vIiAt  145 (325)
                      .+.+.+...+ +..+++++++.++.-+...+. -.++.++..++  +..+ +.+|.|++|.
T Consensus        74 ~~~~~l~~~~-nI~v~~~~~v~~i~Gd~~~~~v~~v~l~~~~tg--e~~~-l~~dGvFVaI  130 (130)
T d1vdca2          74 IMQQRALSNP-KIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTG--DVSD-LKVSGLFFAI  130 (130)
T ss_dssp             HHHHHHHTCT-TEEEECSEEEEEEEESSSSSSEEEEEEEETTTC--CEEE-EECSEEEECS
T ss_pred             hhhhccccCC-ceEEEeccEEEEEEccCCcccEEEEEEEECCCC--CEEE-EECCEEEEEC
Confidence            2223333333 356699999999976542222 23566665444  4477 9999999873

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.74  E-value=2.6e-06  Score=69.58  Aligned_cols=30  Identities=30%  Similarity=0.482  Sum_probs=26.5

Q ss_pred             eEEEECCChHHHHHHHHHHhcCCCeEEEec
Q 020533            9 EVIMVGAGTSGLATAACLSLQSIPYVILER   38 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~   38 (325)
                      +|+|||||++||++|.+|+++|++|+++|+
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~   31 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLD   31 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCE
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEee
Confidence            699999999999999999999987655554

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=97.72  E-value=1.1e-05  Score=71.10  Aligned_cols=35  Identities=29%  Similarity=0.466  Sum_probs=32.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcC-CCeEEEecCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQS-IPYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g-~~v~v~e~~~~   41 (325)
                      .||++|||||++|+.+|.+|++.+ .+|+|+|+...
T Consensus        24 tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~   59 (391)
T d1gpea1          24 TYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY   59 (391)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred             eeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence            599999999999999999999998 79999999863

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.67  E-value=1.9e-05  Score=61.62  Aligned_cols=34  Identities=18%  Similarity=0.278  Sum_probs=29.7

Q ss_pred             CeEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                      ++|+|||+|.+|+|+|..|.+.|.+++++.+++.
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~   37 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDE   37 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESS
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCceEEEEEecc
Confidence            4699999999999999999999988877777663

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=97.66  E-value=1.4e-05  Score=70.25  Aligned_cols=34  Identities=35%  Similarity=0.579  Sum_probs=31.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcC-CCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQS-IPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g-~~v~v~e~~~   40 (325)
                      .||++|||||.+|+.+|.+|++.+ ++|+|+|+.+
T Consensus        17 tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~   51 (385)
T d1cf3a1          17 TVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   51 (385)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSC
T ss_pred             eEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCC
Confidence            489999999999999999999976 7999999875

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.62  E-value=3.5e-05  Score=52.98  Aligned_cols=35  Identities=17%  Similarity=0.431  Sum_probs=32.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      .++|+|+|.|.+|+++|+.|.++|.+|+++|.+..
T Consensus         5 ~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             CCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            46899999999999999999999999999998764

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=97.58  E-value=1.5e-05  Score=69.05  Aligned_cols=34  Identities=38%  Similarity=0.540  Sum_probs=31.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      .||+||||+|++|+.+|.+|++. ++|+|+|+.+.
T Consensus        26 ~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~~   59 (351)
T d1ju2a1          26 SYDYVIVGGGTSGCPLAATLSEK-YKVLVLERGSL   59 (351)
T ss_dssp             EEEEEEECCSTTHHHHHHHHTTT-SCEEEECSSBC
T ss_pred             CccEEEECccHHHHHHHHHhcCC-CCEEEEecCCC
Confidence            48999999999999999999986 99999999863

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.55  E-value=4.7e-05  Score=61.52  Aligned_cols=49  Identities=16%  Similarity=0.185  Sum_probs=39.6

Q ss_pred             CCCCCCeEEEECcCCCHHHHHHHHhhc--------------------c-CeEEEEEecCCeeechhhHHH
Q 020533          182 KPYGGKNVLVVGSGNSGMEIALDLANH--------------------A-AKTSLVVRSPVHVLSREMVYL  230 (325)
Q Consensus       182 ~~~~~~~v~VvG~G~s~~e~a~~l~~~--------------------~-~~v~~~~r~~~~~~p~~~~~~  230 (325)
                      .++.+++|+|||+|++|+|+|..+.+.                    + .+|+++.|++..-++....++
T Consensus        35 ~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~~~~~ft~~El  104 (225)
T d1cjca1          35 PDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKEL  104 (225)
T ss_dssp             CCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCCHHHH
T ss_pred             ccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcChHhCCCCchhh
Confidence            456799999999999999999999883                    3 579999999966666544443

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.50  E-value=5.4e-05  Score=60.74  Aligned_cols=48  Identities=19%  Similarity=0.246  Sum_probs=38.5

Q ss_pred             CCCCCCeEEEECcCCCHHHHHHHHh--------------------hcc-CeEEEEEecCCeeechhhHH
Q 020533          182 KPYGGKNVLVVGSGNSGMEIALDLA--------------------NHA-AKTSLVVRSPVHVLSREMVY  229 (325)
Q Consensus       182 ~~~~~~~v~VvG~G~s~~e~a~~l~--------------------~~~-~~v~~~~r~~~~~~p~~~~~  229 (325)
                      .++.+++|+|||+|++|+|+|..++                    +.+ .+|+++.|++..-++....+
T Consensus        35 ~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~~~~~ft~~E  103 (216)
T d1lqta1          35 PDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLE  103 (216)
T ss_dssp             CCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCCHHH
T ss_pred             ccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECChHhCCCChhh
Confidence            4567899999999999999999887                    344 57999999997766654443

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.43  E-value=3.5e-05  Score=60.43  Aligned_cols=35  Identities=14%  Similarity=0.216  Sum_probs=32.6

Q ss_pred             CCCeEEEECcCCCHHHHHHHHhhccC-eEEEEEecC
Q 020533          185 GGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSP  219 (325)
Q Consensus       185 ~~~~v~VvG~G~s~~e~a~~l~~~~~-~v~~~~r~~  219 (325)
                      .+|||+|||+|++|+++|..|++.|. .|+++.|++
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~   38 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQE   38 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecC
Confidence            36899999999999999999999997 599999998

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=97.43  E-value=7.6e-05  Score=57.83  Aligned_cols=38  Identities=26%  Similarity=0.424  Sum_probs=35.1

Q ss_pred             CCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          182 KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       182 ~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      ....+|+|+|||+|.+|++.|..|++.|.+|+++.+.+
T Consensus        39 ~~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~   76 (179)
T d1ps9a3          39 PAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHS   76 (179)
T ss_dssp             SCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccC
Confidence            44567999999999999999999999999999999987

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.40  E-value=4.8e-05  Score=59.05  Aligned_cols=41  Identities=24%  Similarity=0.466  Sum_probs=34.6

Q ss_pred             CCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCCeeech
Q 020533          185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSR  225 (325)
Q Consensus       185 ~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~  225 (325)
                      ++++|+|||+|++|+|+|..|.+.+.+++++.+.+....|.
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~   42 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPH   42 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCB
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccch
Confidence            46899999999999999999999999988887776444443

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.38  E-value=7.3e-05  Score=57.68  Aligned_cols=34  Identities=24%  Similarity=0.234  Sum_probs=32.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      .++|+|||||..|..+|.+|.++|++|+|+||+.
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~   35 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL   35 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCh
Confidence            4689999999999999999999999999999997

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.37  E-value=6.4e-05  Score=58.40  Aligned_cols=34  Identities=24%  Similarity=0.304  Sum_probs=31.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      ++|+|||+|..|+++|..|.++|++|.++|+++.
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~   35 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQ   35 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            5799999999999999999999999999999763

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.37  E-value=6.9e-05  Score=57.72  Aligned_cols=39  Identities=23%  Similarity=0.332  Sum_probs=33.9

Q ss_pred             CCCeEEEECcCCCHHHHHHHHhhccC--eEEEEEecCCeee
Q 020533          185 GGKNVLVVGSGNSGMEIALDLANHAA--KTSLVVRSPVHVL  223 (325)
Q Consensus       185 ~~~~v~VvG~G~s~~e~a~~l~~~~~--~v~~~~r~~~~~~  223 (325)
                      .||||+|||+|.+|+++|..|.+.+.  +||++.+++.+..
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~   41 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYT   41 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEEC
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCcccc
Confidence            48999999999999999999999874  7899999984433

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=8.8e-05  Score=59.30  Aligned_cols=118  Identities=14%  Similarity=0.123  Sum_probs=64.4

Q ss_pred             CeEEEECcCCCHHHHHHHHhhcc--CeEEEEEecCCeeechhhHHHHHHHHhh-CCHHHHHHHHHHHHHHHhcCccccCC
Q 020533          187 KNVLVVGSGNSGMEIALDLANHA--AKTSLVVRSPVHVLSREMVYLGVVLFKY-VPFGWVDTLMVMLSRLVYGDLSKYGI  263 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~~--~~v~~~~r~~~~~~p~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~  263 (325)
                      .+++|||+|.+|+++|..|.+.+  .+|+++.+.+.  +|.....++..+... .+...          ..+ .....  
T Consensus         5 ~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~--~py~r~~Ls~~~~~~~~~~~~----------~~~-~~~~~--   69 (213)
T d1m6ia1           5 VPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPE--LPYMRPPLSKELWFSDDPNVT----------KTL-RFKQW--   69 (213)
T ss_dssp             EEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSS--CCBCSGGGGTGGGCC--CTHH----------HHC-EEECT--
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCC--CCccccccceecccccCchhh----------hhh-hhhhc--
Confidence            46899999999999999998876  46999988763  232222222111100 01100          000 00000  


Q ss_pred             CCCCCCchhhhhccCceeeeChhhhhhhhCCceEEecC--CeeeecC-ceEEeeecceecCCC
Q 020533          264 PKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQSEQQ--NSQIGAQ-TRTELLLKTWLGTDT  323 (325)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~~~~~--i~~~~~~-~~v~~~dg~~~~~d~  323 (325)
                      ...+ ....   +..............+++.+|+++.+  |+.++.+ ..|.+.||+++++|.
T Consensus        70 ~~~~-~~~~---~~~~~~~~~~~~~~~~~~~gI~~~~g~~V~~id~~~~~V~l~dG~~i~~d~  128 (213)
T d1m6ia1          70 NGKE-RSIY---FQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEK  128 (213)
T ss_dssp             TSCE-EESB---SSCGGGSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEE
T ss_pred             ccch-hhhh---cCChhhhhhhhhHHHHHHCCeEEEeCCEEEEeeccCceeeeccceeeccce
Confidence            0000 0000   00011113333455677888999887  8888653 468999999998873

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.95  E-value=0.00041  Score=52.62  Aligned_cols=34  Identities=18%  Similarity=0.124  Sum_probs=31.7

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      ++|+|||+|..|...|..|.+.|++|++++|.+.
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            3799999999999999999999999999999874

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.93  E-value=0.00037  Score=50.94  Aligned_cols=33  Identities=24%  Similarity=0.380  Sum_probs=31.4

Q ss_pred             eEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            9 EVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      +|+|+|+|..|..+|..|.+.|++|+++|+++.
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~   34 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKD   34 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCChh
Confidence            699999999999999999999999999999874

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.92  E-value=0.00025  Score=59.01  Aligned_cols=34  Identities=29%  Similarity=0.441  Sum_probs=32.1

Q ss_pred             CCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       186 ~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      +|+|+|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            5899999999999999999999999999999865

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.90  E-value=0.00039  Score=47.48  Aligned_cols=37  Identities=22%  Similarity=0.363  Sum_probs=34.5

Q ss_pred             CCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       183 ~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      ++++|+|+|+|.|.||.-+|..|.+.|.+|+++..+.
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~   38 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRM   38 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSS
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCc
Confidence            6789999999999999999999999999999998765

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=96.87  E-value=0.00017  Score=56.28  Aligned_cols=35  Identities=23%  Similarity=0.340  Sum_probs=32.1

Q ss_pred             CCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       185 ~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      ++++|+|||+|++|++.|..+++.|.+|+++.|.+
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~   38 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGME   38 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeec
Confidence            45789999999999999999999999999998765

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.85  E-value=0.00046  Score=50.46  Aligned_cols=34  Identities=12%  Similarity=0.115  Sum_probs=31.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      ++++|||+|..|..+|..|.+.|++|+++|+++.
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~   34 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEE   34 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHH
Confidence            4699999999999999999999999999999874

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.82  E-value=0.00073  Score=51.02  Aligned_cols=35  Identities=17%  Similarity=0.192  Sum_probs=32.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ++.+|+|||+|.+|+.+++.+.+.|.+|++||.+.
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~   65 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV   65 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence            35789999999999999999999999999999875

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.00057  Score=53.44  Aligned_cols=34  Identities=18%  Similarity=0.300  Sum_probs=31.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      .+|+|||||..|...|..++..|++|+++|+++.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED   38 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            4899999999999999999999999999998863

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.71  E-value=0.00094  Score=51.12  Aligned_cols=35  Identities=17%  Similarity=0.248  Sum_probs=32.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      +.+|+|||||.+|+.+++.+...|..|++||.+..
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~   63 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA   63 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHH
Confidence            46899999999999999999999999999998863

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.66  E-value=0.00056  Score=53.17  Aligned_cols=33  Identities=18%  Similarity=0.260  Sum_probs=31.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      .+|+|||||..|...|..++..|++|+++|+++
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINE   37 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            479999999999999999999999999999986

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=96.62  E-value=0.00051  Score=55.71  Aligned_cols=32  Identities=31%  Similarity=0.531  Sum_probs=30.4

Q ss_pred             eEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus         4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~   35 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGN   35 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            59999999999999999999999999999876

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.60  E-value=0.00076  Score=57.03  Aligned_cols=35  Identities=29%  Similarity=0.477  Sum_probs=32.2

Q ss_pred             CCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       185 ~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      +.|+|+|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~   35 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD   35 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCC
Confidence            35899999999999999999999999999998775

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.59  E-value=0.00077  Score=50.34  Aligned_cols=36  Identities=25%  Similarity=0.432  Sum_probs=33.0

Q ss_pred             CCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEec
Q 020533          183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRS  218 (325)
Q Consensus       183 ~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~  218 (325)
                      .+++|+|+|||+|..|.+-+..|.+.|++|+++...
T Consensus        10 ~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          10 QLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             CCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             eeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            467999999999999999999999999999999654

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.58  E-value=0.0018  Score=48.30  Aligned_cols=36  Identities=31%  Similarity=0.430  Sum_probs=32.6

Q ss_pred             CCCCeEEEEC-CChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            5 AAGVEVIMVG-AGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         5 ~~~~~v~IIG-aG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      +...+|+||| .|..|..+|++|.+.|++|.++|++.
T Consensus         7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2           7 SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence            3456899999 79999999999999999999999876

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.57  E-value=0.00085  Score=52.83  Aligned_cols=32  Identities=22%  Similarity=0.398  Sum_probs=30.5

Q ss_pred             eEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      +|+|||.|..|+.+|..|+++|++|+.+|.+.
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            69999999999999999999999999999875

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.54  E-value=0.00062  Score=57.38  Aligned_cols=36  Identities=28%  Similarity=0.427  Sum_probs=32.9

Q ss_pred             CCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       184 ~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      -.+|+|+|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus        28 ~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1          28 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            356899999999999999999999999999999864

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.52  E-value=0.0012  Score=48.93  Aligned_cols=37  Identities=27%  Similarity=0.448  Sum_probs=32.5

Q ss_pred             CCCCCeEEEECCChHHHHHHHHHHhcCC--CeEEEecCC
Q 020533            4 QAAGVEVIMVGAGTSGLATAACLSLQSI--PYVILEREN   40 (325)
Q Consensus         4 ~~~~~~v~IIGaG~~Gl~~a~~L~~~g~--~v~v~e~~~   40 (325)
                      ++.+.+|+|||+|..|.++|..|...+.  +++++|++.
T Consensus         2 m~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            3456799999999999999999999885  799999875

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.47  E-value=0.0015  Score=57.96  Aligned_cols=47  Identities=21%  Similarity=0.396  Sum_probs=43.3

Q ss_pred             CCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCCccCCCC
Q 020533            4 QAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYS   50 (325)
Q Consensus         4 ~~~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~~Gg~w~~~~   50 (325)
                      -+..+||+|+|.|..=..+|..|++.|.+|+=+|+++.-||.|....
T Consensus         3 lP~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYGg~~aSl~   49 (491)
T d1vg0a1           3 LPSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFS   49 (491)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEEC
T ss_pred             CCCccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCCCccccee
Confidence            35679999999999999999999999999999999999999998653

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.44  E-value=0.0012  Score=46.58  Aligned_cols=37  Identities=19%  Similarity=0.236  Sum_probs=33.6

Q ss_pred             CCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       183 ~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      ++++|+|+|||+|.+|..-+..|.+.|.+|+++....
T Consensus         9 ~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~   45 (113)
T d1pjqa1           9 QLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTF   45 (113)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             EeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            5678999999999999999999999999999887655

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.34  E-value=0.0018  Score=48.96  Aligned_cols=32  Identities=22%  Similarity=0.257  Sum_probs=30.4

Q ss_pred             eEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      +|.|||+|..|.+.|+.|.++|++|+++|+++
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            69999999999999999999999999999875

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.30  E-value=0.0018  Score=52.06  Aligned_cols=37  Identities=30%  Similarity=0.337  Sum_probs=34.2

Q ss_pred             CCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       183 ~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      ...+++|+|||+|.+|+.+|..|++.|.+|+++.+++
T Consensus        46 ~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~   82 (233)
T d1djqa3          46 TKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAE   82 (233)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             ccCCceEEEEcccHHHHHHHHHHHHhccceeeEeecc
Confidence            3467999999999999999999999999999999887

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=96.28  E-value=0.0014  Score=53.00  Aligned_cols=34  Identities=35%  Similarity=0.470  Sum_probs=31.6

Q ss_pred             CCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       186 ~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .|+|+|||+|.+|+-+|..|++.|.+|+++.|..
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4689999999999999999999999999999864

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=96.21  E-value=0.0014  Score=50.30  Aligned_cols=32  Identities=34%  Similarity=0.463  Sum_probs=29.7

Q ss_pred             eEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .|+|||+|++|+++|..+++.|.+|+++.+++
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~~   34 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERF   34 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSST
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEec
Confidence            58999999999999999999999999999753

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.20  E-value=0.0011  Score=51.57  Aligned_cols=34  Identities=24%  Similarity=0.199  Sum_probs=31.1

Q ss_pred             CCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       186 ~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .++|+|||+|++|+++|..+++.|.++.++.+..
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~   38 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWM   38 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeec
Confidence            4789999999999999999999999999998664

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=96.18  E-value=0.0016  Score=52.87  Aligned_cols=35  Identities=31%  Similarity=0.433  Sum_probs=32.6

Q ss_pred             CCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       186 ~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                      .++|+|||+|.+|+-+|..|++.|.+|+++.|++.
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~   38 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   38 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            57899999999999999999999999999999763

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.0015  Score=54.88  Aligned_cols=35  Identities=26%  Similarity=0.418  Sum_probs=31.8

Q ss_pred             CCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       185 ~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      +.++|+|||+|.+|+-+|..|++.|.+|+++++++
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~   38 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD   38 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            34689999999999999999999999999998764

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.15  E-value=0.0032  Score=44.32  Aligned_cols=35  Identities=14%  Similarity=0.111  Sum_probs=31.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ..++|+|||+|..|..-|+.|.+.|.++++++...
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~   45 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALTF   45 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            35789999999999999999999999999998755

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=96.10  E-value=0.0039  Score=44.51  Aligned_cols=41  Identities=17%  Similarity=0.318  Sum_probs=35.5

Q ss_pred             CCCCCCCCeEEEECCCh-----------HHHHHHHHHHhcCCCeEEEecCCC
Q 020533            1 MKEQAAGVEVIMVGAGT-----------SGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         1 M~~~~~~~~v~IIGaG~-----------~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      |......++|+|||+||           ++..+++.|++.|++++++..++.
T Consensus         1 mp~~~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~   52 (127)
T d1a9xa3           1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPA   52 (127)
T ss_dssp             CCCCSSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTT
T ss_pred             CCCCCCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchH
Confidence            66666678999999996           788899999999999999988874

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.06  E-value=0.0039  Score=46.59  Aligned_cols=36  Identities=19%  Similarity=0.286  Sum_probs=31.5

Q ss_pred             CCCCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCC
Q 020533            5 AAGVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (325)
Q Consensus         5 ~~~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~   40 (325)
                      .++++|+|||+|..|.++|..|...++ +++++|.++
T Consensus         5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~   41 (154)
T d1pzga1           5 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   41 (154)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence            456799999999999999999988887 899999776

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.00  E-value=0.0027  Score=47.19  Aligned_cols=34  Identities=15%  Similarity=0.327  Sum_probs=31.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERE   39 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~   39 (325)
                      ..++|+|||||..|+.-|..|.+.|.+|+|+...
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4679999999999999999999999999999654

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=95.97  E-value=0.0016  Score=53.64  Aligned_cols=32  Identities=38%  Similarity=0.537  Sum_probs=30.2

Q ss_pred             eEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      +|+|||+|.+|+-+|..|++.|.+|+++++++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~   33 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSA   33 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            59999999999999999999999999999864

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.97  E-value=0.0042  Score=46.04  Aligned_cols=39  Identities=31%  Similarity=0.527  Sum_probs=32.8

Q ss_pred             CCCCCCCCeEEEECCChHHHHHHHHHHhcCC--CeEEEecCC
Q 020533            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSI--PYVILEREN   40 (325)
Q Consensus         1 M~~~~~~~~v~IIGaG~~Gl~~a~~L~~~g~--~v~v~e~~~   40 (325)
                      |++.. ..+|.|||||..|.++|..|...++  +++++|..+
T Consensus         1 m~~~~-~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~   41 (148)
T d1ldna1           1 MKNNG-GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (148)
T ss_dssp             CTTTT-SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCC-CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence            44433 4689999999999999999999887  799999875

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.96  E-value=0.0022  Score=49.94  Aligned_cols=32  Identities=28%  Similarity=0.397  Sum_probs=28.7

Q ss_pred             eEEEECcCCCHHHHHHHHhhcc--CeEEEEEecC
Q 020533          188 NVLVVGSGNSGMEIALDLANHA--AKTSLVVRSP  219 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~--~~v~~~~r~~  219 (325)
                      +|+|||+|++|+|+|..|.+.+  .+|+++.|.+
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            6999999999999999999985  4789998876

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=95.96  E-value=0.0041  Score=47.51  Aligned_cols=34  Identities=9%  Similarity=0.189  Sum_probs=31.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      .+|.|||-|..|..+|.+|.++|++|.++||++.
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~   36 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS   36 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            5799999999999999999999999999998863

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.95  E-value=0.0018  Score=51.77  Aligned_cols=32  Identities=19%  Similarity=0.242  Sum_probs=30.5

Q ss_pred             eEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .|+|||+|.+|.-+|..|++.|.+|+++.+++
T Consensus         7 DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           7 DVIVLGTGITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            59999999999999999999999999999976

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.91  E-value=0.0018  Score=52.28  Aligned_cols=32  Identities=28%  Similarity=0.428  Sum_probs=29.5

Q ss_pred             eEEEECcCCCHHHHHHHHhhccC-eEEEEEecC
Q 020533          188 NVLVVGSGNSGMEIALDLANHAA-KTSLVVRSP  219 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~-~v~~~~r~~  219 (325)
                      +|+|||+|.+|+-+|..|++.|. +|+++++++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            59999999999999999999995 699999875

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.88  E-value=0.0018  Score=51.74  Aligned_cols=34  Identities=26%  Similarity=0.298  Sum_probs=30.8

Q ss_pred             CCeEEEECcCCCHHHHHHHHhhcc-------CeEEEEEecC
Q 020533          186 GKNVLVVGSGNSGMEIALDLANHA-------AKTSLVVRSP  219 (325)
Q Consensus       186 ~~~v~VvG~G~s~~e~a~~l~~~~-------~~v~~~~r~~  219 (325)
                      +.+|+|||+|.+|+.+|..|++.|       .+|+++.+.+
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~   42 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLP   42 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence            569999999999999999999987       4799999986

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=95.86  E-value=0.0024  Score=54.16  Aligned_cols=33  Identities=24%  Similarity=0.450  Sum_probs=29.9

Q ss_pred             CeEEEECcCCCHHHHHHHHhhcc--CeEEEEEecC
Q 020533          187 KNVLVVGSGNSGMEIALDLANHA--AKTSLVVRSP  219 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~~--~~v~~~~r~~  219 (325)
                      |+|+|||+|.+|+-+|..|++.+  .+|+++.|+.
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            79999999999999999998776  4899999985

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=95.80  E-value=0.0057  Score=42.50  Aligned_cols=35  Identities=17%  Similarity=0.140  Sum_probs=30.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ..++|+|||+|.||+-.|..|++...+++++.+.+
T Consensus        31 ~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          31 VGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence            35789999999999999999999888888776654

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=95.79  E-value=0.0029  Score=49.07  Aligned_cols=33  Identities=21%  Similarity=0.291  Sum_probs=30.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      .+|+|||||.-|.++|..|++.|.+|+++.+++
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~   40 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   40 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence            479999999999999999999999999998875

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.79  E-value=0.0082  Score=42.00  Aligned_cols=36  Identities=19%  Similarity=0.289  Sum_probs=32.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      ...+|.|||||.-|..+|....+.|+++.++|.++.
T Consensus        10 ~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            346899999999999999999999999999998764

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.77  E-value=0.0028  Score=52.89  Aligned_cols=32  Identities=25%  Similarity=0.340  Sum_probs=29.8

Q ss_pred             eEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      +|+|||+|.||+-+|..|++.|.+|+++.+++
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~   34 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRN   34 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCC
Confidence            68999999999999999999999999998864

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.71  E-value=0.0063  Score=46.13  Aligned_cols=34  Identities=26%  Similarity=0.295  Sum_probs=32.2

Q ss_pred             CCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       186 ~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .|+|+|||+|.+|.-+|..|++.|.+|+++.|+.
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~   35 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL   35 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCh
Confidence            6899999999999999999999999999999885

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.68  E-value=0.0045  Score=47.52  Aligned_cols=31  Identities=29%  Similarity=0.231  Sum_probs=29.0

Q ss_pred             eEEEECCChHHHHHHHHHHhcCCCeEEEecC
Q 020533            9 EVIMVGAGTSGLATAACLSLQSIPYVILERE   39 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~   39 (325)
                      +|+|||+|.-|.+.|..|++.|.+|.+..|.
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~   32 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTE   32 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            7999999999999999999999999998664

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.66  E-value=0.0048  Score=46.38  Aligned_cols=32  Identities=22%  Similarity=0.308  Sum_probs=30.6

Q ss_pred             eEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      +|.|||.|..|..+|.+|.++|++|.++|+++
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~   33 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   33 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            69999999999999999999999999999876

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.56  E-value=0.005  Score=47.33  Aligned_cols=32  Identities=25%  Similarity=0.314  Sum_probs=29.9

Q ss_pred             eEEEE-CCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            9 EVIMV-GAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         9 ~v~II-GaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      +|+|| |+|.-|.++|..|+++|++|++..|++
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            69999 679999999999999999999999876

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.51  E-value=0.0061  Score=45.82  Aligned_cols=33  Identities=15%  Similarity=0.232  Sum_probs=31.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      .+|.+||.|..|..+|++|.++|++|.++|++.
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~   34 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ   34 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECch
Confidence            469999999999999999999999999999875

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.44  E-value=0.0044  Score=48.84  Aligned_cols=33  Identities=24%  Similarity=0.427  Sum_probs=30.9

Q ss_pred             eEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                      .|+|||+|++|+.+|..+++.|.+|+++.+.+.
T Consensus         5 DvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~   37 (221)
T d1dxla1           5 DVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGA   37 (221)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCC
Confidence            699999999999999999999999999998763

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.43  E-value=0.0063  Score=47.26  Aligned_cols=32  Identities=22%  Similarity=0.304  Sum_probs=28.5

Q ss_pred             eEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            9 EVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      +|+|||.|..||.+|..|+ +|++|+.+|-++.
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~   33 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPS   33 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTSEEEEECSCHH
T ss_pred             EEEEECCChhHHHHHHHHH-CCCcEEEEECCHH
Confidence            6999999999999998776 5999999998763

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=95.37  E-value=0.011  Score=44.14  Aligned_cols=34  Identities=21%  Similarity=0.374  Sum_probs=31.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC--CeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI--PYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~--~v~v~e~~~   40 (325)
                      +.+|+|||+|..|-++|..|...|+  +++++|.++
T Consensus        20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~   55 (160)
T d1i0za1          20 NNKITVVGVGQVGMACAISILGKSLADELALVDVLE   55 (160)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            4689999999999999999999988  799999875

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.34  E-value=0.0087  Score=45.62  Aligned_cols=33  Identities=21%  Similarity=0.341  Sum_probs=30.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ++|.|||.|..|..+|++|.++|++|.++|++.
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~   34 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCH
Confidence            369999999999999999999999999999875

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.33  E-value=0.0057  Score=48.08  Aligned_cols=32  Identities=19%  Similarity=0.317  Sum_probs=30.0

Q ss_pred             eEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .|+|||+|+.|+.+|..+++.|.+|.++.+..
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~   35 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYGQKCALIEAKE   35 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence            58999999999999999999999999999864

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.23  E-value=0.0052  Score=48.85  Aligned_cols=33  Identities=33%  Similarity=0.477  Sum_probs=29.6

Q ss_pred             eEEEECcCCCHHHHHHHHhhc--cCeEEEEEecCC
Q 020533          188 NVLVVGSGNSGMEIALDLANH--AAKTSLVVRSPV  220 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~--~~~v~~~~r~~~  220 (325)
                      +|+|||+|.+|+.+|..|.+.  +.+|+++.+.+.
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            899999999999999999876  568999999873

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=95.23  E-value=0.0088  Score=44.08  Aligned_cols=33  Identities=27%  Similarity=0.483  Sum_probs=29.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCC--CeEEEecCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSI--PYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~--~v~v~e~~~   40 (325)
                      ++|+|||+|..|.++|..|..+|.  +++++|.+.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   36 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            589999999999999999999886  799998765

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=95.20  E-value=0.011  Score=43.30  Aligned_cols=34  Identities=24%  Similarity=0.389  Sum_probs=29.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCC--CeEEEecCCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSI--PYVILERENC   41 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~--~v~v~e~~~~   41 (325)
                      .+|+|||+|..|.++|..|..++.  +++++|....
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~   37 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKE   37 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC--
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCC
Confidence            479999999999999999999987  7999997764

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=95.16  E-value=0.012  Score=43.18  Aligned_cols=33  Identities=21%  Similarity=0.345  Sum_probs=30.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCC--CeEEEecCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSI--PYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~--~v~v~e~~~   40 (325)
                      .+|+|||+|..|-++|..|..+++  +++++|.++
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            579999999999999999999987  799999775

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=95.15  E-value=0.012  Score=43.18  Aligned_cols=33  Identities=27%  Similarity=0.446  Sum_probs=29.7

Q ss_pred             eEEEECCChHHHHHHHHHHhcCC--CeEEEecCCC
Q 020533            9 EVIMVGAGTSGLATAACLSLQSI--PYVILERENC   41 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~--~v~v~e~~~~   41 (325)
                      +|+|||||..|.++|..|...+.  +++++|.++.
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~   36 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccc
Confidence            69999999999999999999885  8999998763

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=95.14  E-value=0.011  Score=44.46  Aligned_cols=35  Identities=26%  Similarity=0.348  Sum_probs=31.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      .-.|+|+|+|+.|+.++..+...|.+|+++|+++.
T Consensus        27 g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~   61 (170)
T d1e3ja2          27 GTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPR   61 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEEcccccchhhHhhHhhhcccccccchHHH
Confidence            45799999999999999999999999999998863

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.14  E-value=0.013  Score=44.24  Aligned_cols=36  Identities=19%  Similarity=0.214  Sum_probs=31.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      ....|+|+|+|+.|+.++..+...|.+|+++|+++.
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~   62 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR   62 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccccccccccchh
Confidence            345799999999999999888888999999998864

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.12  E-value=0.012  Score=44.50  Aligned_cols=35  Identities=23%  Similarity=0.356  Sum_probs=31.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~~   41 (325)
                      ...|+|+|+|+.|+.++..+...|. +|+++|+++.
T Consensus        27 gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~   62 (171)
T d1pl8a2          27 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSAT   62 (171)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH
T ss_pred             CCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHH
Confidence            4579999999999999999999998 6899998874

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.11  E-value=0.0052  Score=48.50  Aligned_cols=33  Identities=24%  Similarity=0.385  Sum_probs=30.7

Q ss_pred             CeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .+++|||+|+.|+++|..+++.|.+|+++.+.+
T Consensus         6 ~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~   38 (220)
T d1lvla1           6 TTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQA   38 (220)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            479999999999999999999999999999864

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.07  E-value=0.0071  Score=49.15  Aligned_cols=34  Identities=29%  Similarity=0.479  Sum_probs=31.1

Q ss_pred             CeEEEECcCCCHHHHHHHHhhccC-eEEEEEecCC
Q 020533          187 KNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSPV  220 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~~~-~v~~~~r~~~  220 (325)
                      -+|+|||+|.+|+-+|..|++.|. +|+++.|++.
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~   36 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE   36 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            479999999999999999999994 8999999873

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.06  E-value=0.011  Score=38.34  Aligned_cols=34  Identities=15%  Similarity=0.072  Sum_probs=31.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      +.|.|||+|.-|-.++....+.|+++.++|..+.
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            4799999999999999999999999999998764

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=95.03  E-value=0.012  Score=43.09  Aligned_cols=34  Identities=26%  Similarity=0.408  Sum_probs=30.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCC-CeEEEecCCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSI-PYVILERENC   41 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~~   41 (325)
                      .+|.|||+|..|.++|..|...++ +++++|..+.
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~   36 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEG   36 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccc
Confidence            589999999999999999998887 8899987653

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.98  E-value=0.014  Score=43.84  Aligned_cols=36  Identities=14%  Similarity=0.228  Sum_probs=31.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      ....|+|+|+|+.|+.++..+...|.+|+++|+++.
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~   62 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDA   62 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCCccceecchhh
Confidence            345799999999999999999889999999998863

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=94.98  E-value=0.0068  Score=49.39  Aligned_cols=32  Identities=31%  Similarity=0.427  Sum_probs=30.2

Q ss_pred             eEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      +|+|||+|.+|+=+|..|++.|.+|+++.|..
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            59999999999999999999999999999864

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.94  E-value=0.006  Score=50.22  Aligned_cols=32  Identities=22%  Similarity=0.414  Sum_probs=31.0

Q ss_pred             eEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      +|+|||+|.+|.-+|..|++.|.+|+++.|++
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~   35 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQT   35 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            79999999999999999999999999999987

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=94.91  E-value=0.0067  Score=49.05  Aligned_cols=33  Identities=18%  Similarity=0.360  Sum_probs=31.1

Q ss_pred             CeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .+|+|||+|.+|+-+|..+++.|.+|+++.+.+
T Consensus         5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~   37 (253)
T d2gqfa1           5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGK   37 (253)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            469999999999999999999999999999986

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.91  E-value=0.18  Score=39.57  Aligned_cols=34  Identities=21%  Similarity=0.297  Sum_probs=29.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhc--------------------CC-CeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQ--------------------SI-PYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~--------------------g~-~v~v~e~~~   40 (325)
                      ..+|+|||+|-.++=+|+.|.+.                    |. +|.++.|+.
T Consensus        39 gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg   93 (225)
T d1cjca1          39 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRG   93 (225)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSC
T ss_pred             CceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcC
Confidence            47899999999999999999883                    55 799999876

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=94.91  E-value=0.015  Score=43.97  Aligned_cols=35  Identities=20%  Similarity=0.311  Sum_probs=31.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ..++|+|+|+|-++-+++..|.+.|.+++|+.|+.
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~   51 (170)
T d1nyta1          17 PGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV   51 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence            35789999999999999999999999999998875

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=94.87  E-value=0.014  Score=44.57  Aligned_cols=35  Identities=20%  Similarity=0.289  Sum_probs=31.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~~   41 (325)
                      ...|+|+|+|+.|+.++..+...|. +|+++|+++.
T Consensus        29 G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~   64 (182)
T d1vj0a2          29 GKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPN   64 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHH
T ss_pred             CCEEEEECCCccchhheecccccccccccccccccc
Confidence            4679999999999999999999998 6899998763

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.85  E-value=0.0084  Score=47.10  Aligned_cols=33  Identities=30%  Similarity=0.463  Sum_probs=30.5

Q ss_pred             CeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      ..|+|||+|+.|+++|..+++.|.+|+++.+..
T Consensus         4 ~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~   36 (223)
T d1ebda1           4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN   36 (223)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEecCC
Confidence            369999999999999999999999999999865

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.85  E-value=0.007  Score=50.89  Aligned_cols=32  Identities=31%  Similarity=0.398  Sum_probs=29.6

Q ss_pred             eEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .|+|||+|.+|+-+|..|++.|.+|+++++++
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            48999999999999999999999999998754

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=94.82  E-value=0.0072  Score=46.12  Aligned_cols=33  Identities=27%  Similarity=0.210  Sum_probs=31.4

Q ss_pred             CeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      |+++|||+|+.|.-+|..|++.|.+|+++.|++
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            799999999999999999999999999999875

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.80  E-value=0.014  Score=43.17  Aligned_cols=32  Identities=19%  Similarity=0.171  Sum_probs=29.9

Q ss_pred             eEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      +|.|||.|..|..+|..|.++|++++++++.+
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~   33 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGR   33 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTC
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCch
Confidence            69999999999999999999999999988765

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.78  E-value=0.021  Score=42.58  Aligned_cols=34  Identities=21%  Similarity=0.510  Sum_probs=30.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC--CeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI--PYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~--~v~v~e~~~   40 (325)
                      ..+|.|||+|..|-++|+.|...++  +++++|.+.
T Consensus        19 ~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~   54 (159)
T d2ldxa1          19 RCKITVVGVGDVGMACAISILLKGLADELALVDADT   54 (159)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            3579999999999999999999987  799999875

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=94.76  E-value=0.02  Score=42.23  Aligned_cols=35  Identities=17%  Similarity=0.353  Sum_probs=29.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~~   41 (325)
                      +.+|.|||+|..|-++|..|...++ +++++|.++.
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~   38 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKN   38 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCC
Confidence            4689999999999999998888776 7899998663

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.69  E-value=0.01  Score=46.85  Aligned_cols=33  Identities=24%  Similarity=0.391  Sum_probs=30.7

Q ss_pred             eEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                      .|+|||+|..|+.+|..+++.|.+|.++.+++.
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~   39 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGK   39 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCC
Confidence            699999999999999999999999999998763

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=94.67  E-value=0.018  Score=46.65  Aligned_cols=47  Identities=23%  Similarity=0.303  Sum_probs=36.8

Q ss_pred             ccEEecCCCCCCCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          170 GEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       170 g~~~~~~~~~~~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      +..+...+...   .+.-.++|||+|..|+++|..+++.|.+|+++.+.+
T Consensus        29 ~~~~~~~~~~~---~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~   75 (261)
T d1mo9a1          29 GEVIYNVDEND---PREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWP   75 (261)
T ss_dssp             CCEEEECCTTC---CSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CceEecCCCCC---CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            44555443322   234479999999999999999999999999999877

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.58  E-value=0.017  Score=42.30  Aligned_cols=32  Identities=22%  Similarity=0.252  Sum_probs=29.1

Q ss_pred             eEEEECCChHHHHHHHHHHhcCC--CeEEEecCC
Q 020533            9 EVIMVGAGTSGLATAACLSLQSI--PYVILEREN   40 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~--~v~v~e~~~   40 (325)
                      +|+|||+|..|-++|..|..++.  +++++|.++
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   35 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEeccc
Confidence            79999999999999999998876  799999775

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.53  E-value=0.012  Score=46.61  Aligned_cols=32  Identities=31%  Similarity=0.516  Sum_probs=30.5

Q ss_pred             eEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .|+|||+|+.|+.+|..+++.|.+|+++.+.+
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~   39 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYK   39 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            59999999999999999999999999999876

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=94.53  E-value=0.012  Score=48.29  Aligned_cols=35  Identities=23%  Similarity=0.535  Sum_probs=31.4

Q ss_pred             CCCeEEEECcCCCHHHHHHHHhh-ccCeEEEEEecC
Q 020533          185 GGKNVLVVGSGNSGMEIALDLAN-HAAKTSLVVRSP  219 (325)
Q Consensus       185 ~~~~v~VvG~G~s~~e~a~~l~~-~~~~v~~~~r~~  219 (325)
                      ....|+|||+|.+|+.+|..|++ .|.+|+++.+++
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~   67 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV   67 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCC
Confidence            35679999999999999999987 599999999986

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=94.42  E-value=0.033  Score=39.04  Aligned_cols=36  Identities=8%  Similarity=0.217  Sum_probs=31.7

Q ss_pred             CCCeEEEECCCh-----------HHHHHHHHHHhcCCCeEEEecCCC
Q 020533            6 AGVEVIMVGAGT-----------SGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         6 ~~~~v~IIGaG~-----------~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      ..++|+|||+||           ++..+++.|++.|++++++..++.
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe   49 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE   49 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence            356899999994           788899999999999999988874

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.41  E-value=0.023  Score=42.73  Aligned_cols=33  Identities=21%  Similarity=0.214  Sum_probs=29.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCC--CeEEEecCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSI--PYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~--~v~v~e~~~   40 (325)
                      ++|+|||.|..|-+.|+.|.+.|+  +|..+|++.
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~   36 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence            369999999999999999999987  577788875

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=94.37  E-value=0.012  Score=48.05  Aligned_cols=32  Identities=41%  Similarity=0.558  Sum_probs=30.0

Q ss_pred             eEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus         5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~~   36 (281)
T d2gf3a1           5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (281)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            59999999999999999999999999999864

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.34  E-value=0.013  Score=45.95  Aligned_cols=32  Identities=28%  Similarity=0.457  Sum_probs=29.8

Q ss_pred             eEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .++|||+|+.|+++|..+++.|.+|.++.+..
T Consensus         5 DviIIG~GpaG~~aA~~aar~G~kV~vIEk~~   36 (221)
T d3grsa1           5 DYLVIGGGSGGLASARRAAELGARAAVVESHK   36 (221)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence            48999999999999999999999999998764

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=94.33  E-value=0.011  Score=48.86  Aligned_cols=32  Identities=19%  Similarity=0.487  Sum_probs=29.2

Q ss_pred             eEEEECcCCCHHHHHHHHhhccC-eEEEEEecC
Q 020533          188 NVLVVGSGNSGMEIALDLANHAA-KTSLVVRSP  219 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~-~v~~~~r~~  219 (325)
                      +|+|||+|.+|+=+|..|++.|. +|+++.|++
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            69999999999999999999994 699999874

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=94.33  E-value=0.024  Score=42.61  Aligned_cols=35  Identities=23%  Similarity=0.284  Sum_probs=31.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~   40 (325)
                      ..++|+|||+|-++-+++..|.+.|. ++.|+.|+.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~   51 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV   51 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence            35689999999999999999999997 799998775

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.29  E-value=0.021  Score=41.57  Aligned_cols=32  Identities=25%  Similarity=0.473  Sum_probs=28.6

Q ss_pred             eEEEECCChHHHHHHHHHHhcCC--CeEEEecCC
Q 020533            9 EVIMVGAGTSGLATAACLSLQSI--PYVILEREN   40 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~--~v~v~e~~~   40 (325)
                      +|+|||+|..|.++|..|..++.  +++++|.++
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~   35 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence            79999999999999999998876  799998775

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.28  E-value=0.021  Score=41.85  Aligned_cols=33  Identities=36%  Similarity=0.569  Sum_probs=29.5

Q ss_pred             eEEEECC-ChHHHHHHHHHHhcCC--CeEEEecCCC
Q 020533            9 EVIMVGA-GTSGLATAACLSLQSI--PYVILERENC   41 (325)
Q Consensus         9 ~v~IIGa-G~~Gl~~a~~L~~~g~--~v~v~e~~~~   41 (325)
                      +|+|||| |..|.++|..|...+.  +++++|..+.
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~   37 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHS   37 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchhh
Confidence            6999996 9999999999999986  8999998753

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=94.19  E-value=0.031  Score=41.90  Aligned_cols=36  Identities=19%  Similarity=0.182  Sum_probs=31.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      ....|+|+|+|+.|+.++..+...|.+++++++++.
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~   65 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEA   65 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccccchhhccchh
Confidence            346799999999999999999889999999988763

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=94.19  E-value=0.037  Score=40.76  Aligned_cols=33  Identities=12%  Similarity=0.120  Sum_probs=30.8

Q ss_pred             eEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            9 EVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      .++|+|.|..|..++..|.+.|.+++++|..+.
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~   37 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPE   37 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccch
Confidence            599999999999999999999999999998763

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.04  E-value=0.025  Score=41.40  Aligned_cols=32  Identities=19%  Similarity=0.316  Sum_probs=28.5

Q ss_pred             eEEEECC-ChHHHHHHHHHHhcCC--CeEEEecCC
Q 020533            9 EVIMVGA-GTSGLATAACLSLQSI--PYVILEREN   40 (325)
Q Consensus         9 ~v~IIGa-G~~Gl~~a~~L~~~g~--~v~v~e~~~   40 (325)
                      +|+|||| |..|.++|..|...++  +++++|.+.
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~   36 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccc
Confidence            6999996 9999999999999887  689998764

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.97  E-value=0.014  Score=45.06  Aligned_cols=33  Identities=33%  Similarity=0.361  Sum_probs=31.5

Q ss_pred             CeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      |+|+|||+|..|..+|..++..|.+|+++.+++
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   37 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            799999999999999999999999999998887

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=93.96  E-value=0.014  Score=48.37  Aligned_cols=32  Identities=38%  Similarity=0.686  Sum_probs=30.4

Q ss_pred             eEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .|+|||+|.+|+-+|..+++.|.+|.++.+.+
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~   49 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEP   49 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            69999999999999999999999999999875

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=93.94  E-value=0.033  Score=42.14  Aligned_cols=34  Identities=24%  Similarity=0.381  Sum_probs=30.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~   40 (325)
                      ...|+|+|+|+.|+.++..++..|. +|+++|+++
T Consensus        28 g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~   62 (174)
T d1jqba2          28 GSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP   62 (174)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH
T ss_pred             CCEEEEEcCCcchhhhhhhhhcccccccccccchh
Confidence            4579999999999999999999997 788998876

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=93.90  E-value=0.019  Score=42.76  Aligned_cols=35  Identities=20%  Similarity=0.258  Sum_probs=32.0

Q ss_pred             eEEEECcCCCHHHHHHHHhhccCeEEEEEecCCee
Q 020533          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHV  222 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~~~  222 (325)
                      +|+|+|+|..|.-+|..|++.|.+|+++.|++...
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~   36 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPY   36 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSE
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHh
Confidence            69999999999999999999999999999987543

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=93.89  E-value=0.024  Score=42.77  Aligned_cols=38  Identities=18%  Similarity=0.304  Sum_probs=34.2

Q ss_pred             CCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          182 KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       182 ~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      ...++|+|+|+|+|-+|--++..|.+.|.+++++.|+.
T Consensus        14 ~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~   51 (170)
T d1nyta1          14 FIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV   51 (170)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence            35678999999999999999999999999999998876

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=93.74  E-value=0.018  Score=47.74  Aligned_cols=34  Identities=26%  Similarity=0.356  Sum_probs=31.3

Q ss_pred             CCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       186 ~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .-+|+|||+|.+|+-+|..|.+.|.+|+++.+.+
T Consensus         7 ~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~   40 (298)
T d1w4xa1           7 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAG   40 (298)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCC
Confidence            4579999999999999999999999999999875

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=93.72  E-value=0.02  Score=45.45  Aligned_cols=31  Identities=42%  Similarity=0.613  Sum_probs=29.0

Q ss_pred             eEEEECcCCCHHHHHHHHhhccCeEEEEEec
Q 020533          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRS  218 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~  218 (325)
                      .|+|||+|.+|++.|..+++.|.++-++..+
T Consensus         4 DVIVIGgG~AG~eAA~~aAR~G~ktllit~~   34 (230)
T d2cula1           4 QVLIVGAGFSGAETAFWLAQKGVRVGLLTQS   34 (230)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCcEEEEEec
Confidence            5999999999999999999999999999765

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.71  E-value=0.021  Score=45.19  Aligned_cols=32  Identities=19%  Similarity=0.408  Sum_probs=30.2

Q ss_pred             eEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .|+|||+|+.|..+|..+++.|.+|.++.+.+
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~   36 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVT   36 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCCEEEECCCC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            69999999999999999999999999999765

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.66  E-value=0.018  Score=45.12  Aligned_cols=32  Identities=31%  Similarity=0.508  Sum_probs=29.7

Q ss_pred             eEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .|+|||+|++|+.+|..+++.|.+|.++.+..
T Consensus         5 DviIIGgGpAGl~aA~~aar~G~~V~viE~~~   36 (229)
T d3lada1           5 DVIVIGAGPGGYVAAIKSAQLGLKTALIEKYK   36 (229)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEEECCB
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            59999999999999999999999999998754

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=93.58  E-value=0.02  Score=48.71  Aligned_cols=33  Identities=33%  Similarity=0.413  Sum_probs=30.3

Q ss_pred             eEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                      .|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus         9 dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~   41 (370)
T d3coxa1           9 PALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS   41 (370)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            589999999999999999999999999998643

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.58  E-value=0.041  Score=42.60  Aligned_cols=35  Identities=26%  Similarity=0.367  Sum_probs=31.4

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            7 GVEVIMVGA-GTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGa-G~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      .++|+|+|| |..|-.++.+|.++|++|+++.|++.
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~   38 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS   38 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChh
Confidence            357999996 99999999999999999999998763

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=93.54  E-value=0.019  Score=48.00  Aligned_cols=32  Identities=31%  Similarity=0.647  Sum_probs=30.4

Q ss_pred             eEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .|+|||+|.+|+-+|..+++.|.+|.++.+.+
T Consensus        25 DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~   56 (322)
T d1d4ca2          25 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEP   56 (322)
T ss_dssp             SEEEECSSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            69999999999999999999999999999875

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=93.36  E-value=0.044  Score=44.57  Aligned_cols=35  Identities=26%  Similarity=0.344  Sum_probs=32.1

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            7 GVEVIMVGA-GTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGa-G~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      +++|+|+|| |..|-.++..|.+.|++|.+++|+..
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~   38 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVREST   38 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCc
Confidence            568999998 99999999999999999999998753

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=93.30  E-value=0.056  Score=41.07  Aligned_cols=36  Identities=19%  Similarity=0.392  Sum_probs=31.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSI-PYVILERENC   41 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~~   41 (325)
                      ..++|+|||+|-+|-+++..|.+.|. +++|+.|++.
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~   53 (182)
T d1vi2a1          17 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE   53 (182)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSST
T ss_pred             CCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchH
Confidence            35789999999999999999999988 6889988763

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=93.25  E-value=0.029  Score=47.63  Aligned_cols=32  Identities=22%  Similarity=0.332  Sum_probs=30.0

Q ss_pred             eEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .|+|||+|..|.-+|..|++.|.+|.++++..
T Consensus         4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   35 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ   35 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             eEEEeCcCHHHHHHHHHHHHCcCeEEEEecCC
Confidence            58999999999999999999999999999964

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=93.22  E-value=0.062  Score=40.53  Aligned_cols=35  Identities=14%  Similarity=0.285  Sum_probs=29.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCC-eEEEecCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIP-YVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~-v~v~e~~~~   41 (325)
                      .-.|+|+|+|+.|+.++..+...|.+ |++.|.++.
T Consensus        29 G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~   64 (174)
T d1e3ia2          29 GSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGE   64 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCCceeeeeccchH
Confidence            45799999999999999999999985 667777763

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.21  E-value=0.04  Score=41.10  Aligned_cols=35  Identities=17%  Similarity=0.218  Sum_probs=30.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      +...|+|+|+|+.|+.++..+...|.+|.+++.++
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~   61 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGD   61 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCH
Confidence            34579999999999999999999999999998765

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.19  E-value=0.05  Score=41.91  Aligned_cols=36  Identities=31%  Similarity=0.408  Sum_probs=30.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSI-PYVILERENC   41 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~~   41 (325)
                      ..-+|+|+|+|+.|+.++..+...|. +|+++|.++.
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~   61 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPA   61 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccch
Confidence            34589999999999999999888877 6788887763

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=93.19  E-value=0.046  Score=44.72  Aligned_cols=35  Identities=23%  Similarity=0.264  Sum_probs=31.5

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            7 GVEVIMVGA-GTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGa-G~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      +.+|+|+|| |..|..++..|.++|++|+++.|+..
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   38 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV   38 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence            457999997 99999999999999999999988653

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=93.11  E-value=0.058  Score=40.77  Aligned_cols=35  Identities=14%  Similarity=0.222  Sum_probs=31.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~~   41 (325)
                      ...|+|+|+|+.|+.++..+...|. +|+++|.++.
T Consensus        30 g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~   65 (176)
T d1d1ta2          30 GSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKD   65 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHH
Confidence            4569999999999999999999996 7999998874

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=93.06  E-value=0.017  Score=44.38  Aligned_cols=33  Identities=24%  Similarity=0.239  Sum_probs=31.2

Q ss_pred             CeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      ++|+|||+|..|..+|..++..|.+|+++.+++
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINE   37 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            689999999999999999999999999998876

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=93.00  E-value=0.062  Score=39.91  Aligned_cols=35  Identities=26%  Similarity=0.392  Sum_probs=30.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~   40 (325)
                      ..++|+|||+|-.|-.++.+|...|. +++|+-|..
T Consensus        23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~   58 (159)
T d1gpja2          23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY   58 (159)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred             ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcH
Confidence            45789999999999999999999998 588887664

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=92.99  E-value=0.026  Score=47.02  Aligned_cols=33  Identities=36%  Similarity=0.613  Sum_probs=30.8

Q ss_pred             CeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      -.|+|||+|.+|+-+|..+++.|.+|.++.+.+
T Consensus        20 ~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~   52 (317)
T d1qo8a2          20 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAP   52 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            469999999999999999999999999999875

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=92.94  E-value=0.046  Score=41.92  Aligned_cols=38  Identities=32%  Similarity=0.367  Sum_probs=35.0

Q ss_pred             CCCCCCeEEEEC-cCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          182 KPYGGKNVLVVG-SGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       182 ~~~~~~~v~VvG-~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .++++|+++|.| +|-.|..+|..|++.|.+|+++.|+.
T Consensus        19 ~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          19 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             SCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            578899999999 57899999999999999999999986

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=92.92  E-value=0.05  Score=40.01  Aligned_cols=32  Identities=28%  Similarity=0.317  Sum_probs=29.2

Q ss_pred             eEEEECCChHHHHHHHHHHhcC-CCeEEEecCC
Q 020533            9 EVIMVGAGTSGLATAACLSLQS-IPYVILEREN   40 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g-~~v~v~e~~~   40 (325)
                      +|.+||+|-.|-+.|..|.+.| .++.+++|++
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~   34 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence            6999999999999999998887 7999998886

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=92.75  E-value=0.028  Score=40.37  Aligned_cols=33  Identities=24%  Similarity=0.246  Sum_probs=30.7

Q ss_pred             CeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      |+++|+|.|..|..+|..|.+.|.+|+++...+
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~   33 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   33 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcH
Confidence            679999999999999999999999999998775

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=92.74  E-value=0.056  Score=39.78  Aligned_cols=32  Identities=16%  Similarity=0.167  Sum_probs=29.8

Q ss_pred             eEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      +|.|||+|-.|-+.|..|.+.+.++++.+++.
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~   33 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSSL   33 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcChH
Confidence            69999999999999999999999999998775

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.69  E-value=0.038  Score=41.13  Aligned_cols=38  Identities=26%  Similarity=0.344  Sum_probs=35.2

Q ss_pred             CCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          182 KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       182 ~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      ..+.||+++|+|.|..|--+|..+...|.+|++....|
T Consensus        20 ~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          20 VMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             ceecCCEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            45679999999999999999999999999999998887

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=92.68  E-value=0.031  Score=46.78  Aligned_cols=32  Identities=25%  Similarity=0.443  Sum_probs=29.9

Q ss_pred             eEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .|+|||+|.+|+-.|..+++.|.+|.++.+.+
T Consensus         7 DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~   38 (336)
T d2bs2a2           7 DSLVIGGGLAGLRAAVATQQKGLSTIVLSLIP   38 (336)
T ss_dssp             SEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            59999999999999999999999999998864

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=92.64  E-value=0.036  Score=44.71  Aligned_cols=32  Identities=41%  Similarity=0.642  Sum_probs=29.8

Q ss_pred             eEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .++|||+|..|..+|..+++.|.+|.++.+..
T Consensus         3 DviVIG~G~aG~~aA~~aa~~G~~V~liE~~~   34 (259)
T d1onfa1           3 DLIVIGGGSGGMAAARRAARHNAKVALVEKSR   34 (259)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            48999999999999999999999999999864

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=92.45  E-value=0.071  Score=40.14  Aligned_cols=35  Identities=11%  Similarity=0.159  Sum_probs=30.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~~   41 (325)
                      ...|+|+|+|+.|+.++..+...|. +|+++|.++.
T Consensus        28 G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~   63 (174)
T d1p0fa2          28 GSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKD   63 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGG
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCCceeeccCChHH
Confidence            4579999999999999999999997 6788888763

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=92.44  E-value=0.04  Score=46.55  Aligned_cols=32  Identities=28%  Similarity=0.399  Sum_probs=30.2

Q ss_pred             eEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .|+|||+|..|+-+|..|++.|.+|.++++.+
T Consensus         6 DviIVGsG~aG~v~A~~La~~G~kVlvLEaG~   37 (379)
T d2f5va1           6 DVVIVGSGPIGCTYARELVGAGYKVAMFDIGE   37 (379)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cEEEECcCHHHHHHHHHHhhCCCeEEEEecCC
Confidence            69999999999999999999999999999865

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=92.35  E-value=0.055  Score=40.20  Aligned_cols=37  Identities=30%  Similarity=0.430  Sum_probs=32.7

Q ss_pred             CCCCCeEEEECcCCCHHHHHHHHhhccC-eEEEEEecC
Q 020533          183 PYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSP  219 (325)
Q Consensus       183 ~~~~~~v~VvG~G~s~~e~a~~l~~~~~-~v~~~~r~~  219 (325)
                      .+.+++++|||+|..|..++..|...|. +++++-|+.
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~   58 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY   58 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred             CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcH
Confidence            4678999999999999999999999986 688888874

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=92.33  E-value=0.038  Score=46.27  Aligned_cols=32  Identities=28%  Similarity=0.487  Sum_probs=29.0

Q ss_pred             eEEEECcCCCHHHHHHHHh-----hccCeEEEEEecC
Q 020533          188 NVLVVGSGNSGMEIALDLA-----NHAAKTSLVVRSP  219 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~-----~~~~~v~~~~r~~  219 (325)
                      .|+|||+|.+|+-+|..|+     +.|.+|+++.|++
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~   45 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRS   45 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCC
Confidence            6999999999999999997     4588999999987

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=92.32  E-value=0.058  Score=40.56  Aligned_cols=35  Identities=20%  Similarity=0.209  Sum_probs=31.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ..++|+|+|+|-++-+++..|.+.+.+++|+.|+.
T Consensus        17 ~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~   51 (171)
T d1p77a1          17 PNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF   51 (171)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence            45789999999999999999998888999998885

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.29  E-value=0.029  Score=46.65  Aligned_cols=35  Identities=29%  Similarity=0.488  Sum_probs=31.2

Q ss_pred             CCCeEEEECcCCCHHHHHHHHhhc--cCeEEEEEecC
Q 020533          185 GGKNVLVVGSGNSGMEIALDLANH--AAKTSLVVRSP  219 (325)
Q Consensus       185 ~~~~v~VvG~G~s~~e~a~~l~~~--~~~v~~~~r~~  219 (325)
                      .+++|+|||+|.+|+.+|..|+++  |.+|+++.+++
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~   85 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSV   85 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence            456799999999999999999965  88999999976

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=92.14  E-value=0.064  Score=42.87  Aligned_cols=34  Identities=24%  Similarity=0.430  Sum_probs=30.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~   40 (325)
                      ..+|+|||+|--|..+|..|++.|+ +++++|...
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   64 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   64 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence            3589999999999999999999999 789998654

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=91.96  E-value=0.086  Score=38.26  Aligned_cols=31  Identities=35%  Similarity=0.518  Sum_probs=27.6

Q ss_pred             eEEEEC-CChHHHHHHHHHHhcCC--CeEEEecC
Q 020533            9 EVIMVG-AGTSGLATAACLSLQSI--PYVILERE   39 (325)
Q Consensus         9 ~v~IIG-aG~~Gl~~a~~L~~~g~--~v~v~e~~   39 (325)
                      +|+||| +|..|-++|..|..++.  +++++|..
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~   35 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIP   35 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCG
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecC
Confidence            699999 69999999999999987  68999864

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=91.92  E-value=0.05  Score=40.28  Aligned_cols=38  Identities=24%  Similarity=0.328  Sum_probs=35.6

Q ss_pred             CCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          182 KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       182 ~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      ..+.||+++|+|.|..|-=+|..+...|.+|++....|
T Consensus        19 ~~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DP   56 (163)
T d1v8ba1          19 FLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDP   56 (163)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             ceecCCEEEEecccccchhHHHHHHhCCCEEEEEecCc
Confidence            45679999999999999999999999999999999988

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=91.91  E-value=0.076  Score=39.57  Aligned_cols=36  Identities=19%  Similarity=0.198  Sum_probs=33.1

Q ss_pred             CCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       184 ~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .++.+|+|+|+|..|.+.+..+.++|++|+++..+.
T Consensus        30 v~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~   65 (168)
T d1pjca1          30 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV   65 (168)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence            457899999999999999999999999999998875

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.87  E-value=0.06  Score=40.66  Aligned_cols=36  Identities=22%  Similarity=0.432  Sum_probs=31.1

Q ss_pred             CCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       183 ~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      +.++|+|+|+|+|-+|--++..|.+.+ +++++.|+.
T Consensus        15 ~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~   50 (177)
T d1nvta1          15 RVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTV   50 (177)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhh
Confidence            467899999999999988888887766 899888875

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=91.79  E-value=0.087  Score=39.36  Aligned_cols=35  Identities=23%  Similarity=0.321  Sum_probs=31.4

Q ss_pred             CCCeEEEECcCCCHHHHHHHHhhccC-eEEEEEecC
Q 020533          185 GGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSP  219 (325)
Q Consensus       185 ~~~~v~VvG~G~s~~e~a~~l~~~~~-~v~~~~r~~  219 (325)
                      ++++|+|+|+|-+|--++..|.+.|. +++++.|++
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~   51 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV   51 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence            57899999999999999999999985 799888875

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=91.71  E-value=0.056  Score=40.65  Aligned_cols=38  Identities=21%  Similarity=0.262  Sum_probs=33.3

Q ss_pred             CCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          182 KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       182 ~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      ...++|+|+|+|+|-+|.-++..|.+.+.+++++.|+.
T Consensus        14 ~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~   51 (171)
T d1p77a1          14 WLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF   51 (171)
T ss_dssp             CCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence            35678999999999999988898888888999999985

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.70  E-value=0.084  Score=39.82  Aligned_cols=34  Identities=24%  Similarity=0.318  Sum_probs=29.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ..++|+|||+|-++-+++..|.+.| ++.|+.|+.
T Consensus        17 ~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~   50 (177)
T d1nvta1          17 KDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTV   50 (177)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhh
Confidence            4578999999999999999998777 899998875

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=91.64  E-value=0.12  Score=38.82  Aligned_cols=35  Identities=14%  Similarity=0.255  Sum_probs=28.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeE-EEecCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYV-ILEREN   40 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~-v~e~~~   40 (325)
                      ...+|+|+|+|+.|+.++..+...|.+++ +.|+++
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~   63 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVE   63 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCH
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceeeeeccHH
Confidence            34679999999999999999988898765 455553

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=91.62  E-value=0.14  Score=38.76  Aligned_cols=37  Identities=30%  Similarity=0.390  Sum_probs=34.1

Q ss_pred             CCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       183 ~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .+.+++|.|||.|.+|..+|..+...|.+|..+.|.+
T Consensus        39 ~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~   75 (181)
T d1qp8a1          39 LIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP   75 (181)
T ss_dssp             CCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cccCceEEEeccccccccceeeeeccccccccccccc
Confidence            4679999999999999999999999999999888876

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.45  E-value=0.061  Score=38.42  Aligned_cols=32  Identities=19%  Similarity=0.368  Sum_probs=30.1

Q ss_pred             eEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      +|+|+|+|..|..++..|.+.|.+|+++.+.+
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~   33 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   33 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCCh
Confidence            68999999999999999999999999998876

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=91.36  E-value=0.054  Score=38.51  Aligned_cols=36  Identities=19%  Similarity=0.197  Sum_probs=27.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHh-cCCCe-EEEecCCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSL-QSIPY-VILERENCY   42 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~-~g~~v-~v~e~~~~~   42 (325)
                      +++|+|+|||-+|-+++.++.. .++++ ..||-++..
T Consensus         3 ~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k   40 (126)
T d2dt5a2           3 KWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEK   40 (126)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTT
T ss_pred             CceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHh
Confidence            4689999999999999887754 36665 666877654

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=91.31  E-value=0.13  Score=38.42  Aligned_cols=35  Identities=17%  Similarity=0.234  Sum_probs=29.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~~   41 (325)
                      ...|+|+|+|+.|+.++..++..+. +|+.+|+++.
T Consensus        29 g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~   64 (175)
T d1cdoa2          29 GSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPD   64 (175)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CCEEEEEecCCccchHHHHHHHHhhchheeecchHH
Confidence            4569999999999999999999877 5777887764

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.15  E-value=0.13  Score=39.13  Aligned_cols=35  Identities=23%  Similarity=0.381  Sum_probs=31.5

Q ss_pred             CCCeEEEEC-CChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            6 AGVEVIMVG-AGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         6 ~~~~v~IIG-aG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ..+.++|.| +|-.|..+|+.|+++|.+|++++|+.
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            357899999 58999999999999999999999986

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=91.12  E-value=0.097  Score=40.88  Aligned_cols=36  Identities=22%  Similarity=0.459  Sum_probs=31.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      ..++|+|||+|-+|.-+|..|.+.+.+++++=+...
T Consensus        31 ~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~~   66 (235)
T d1w4xa2          31 SGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPH   66 (235)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CCCEEEEECCCccHHHHHHHHHhhhccccccccccc
Confidence            457999999999999999999999999888877653

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.96  E-value=0.12  Score=38.37  Aligned_cols=36  Identities=25%  Similarity=0.276  Sum_probs=33.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      ..+.++|||-|..|-.+|..|+..|.+|++.|..+.
T Consensus        23 ~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~   58 (163)
T d1li4a1          23 AGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPI   58 (163)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             cCCEEEEeccccccHHHHHHHHhCCCeeEeeecccc
Confidence            357899999999999999999999999999999873

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=90.91  E-value=0.098  Score=39.53  Aligned_cols=35  Identities=20%  Similarity=0.170  Sum_probs=32.5

Q ss_pred             CCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       185 ~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      ++.+|+|+|+|..|...+.....+|++|+++..++
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~   62 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA   62 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccH
Confidence            46799999999999999999999999999998876

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=90.89  E-value=0.045  Score=45.80  Aligned_cols=32  Identities=25%  Similarity=0.546  Sum_probs=30.0

Q ss_pred             eEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .|+|||+|.+|+-+|..+++.|.+|+++.+.+
T Consensus         9 DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~   40 (330)
T d1neka2           9 DAVVIGAGGAGMRAALQISQSGQTCALLSKVF   40 (330)
T ss_dssp             SCEEECCSHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence            69999999999999999999999999998865

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=90.87  E-value=0.13  Score=37.47  Aligned_cols=32  Identities=28%  Similarity=0.319  Sum_probs=25.8

Q ss_pred             eEEEEC-CChHHHHHHHHHHhc-C--CCeEEEecCC
Q 020533            9 EVIMVG-AGTSGLATAACLSLQ-S--IPYVILEREN   40 (325)
Q Consensus         9 ~v~IIG-aG~~Gl~~a~~L~~~-g--~~v~v~e~~~   40 (325)
                      +|+||| +|..|-++|..|... +  .+++++|..+
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~   37 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP   37 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc
Confidence            799999 599999999988643 4  4899998654

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.60  E-value=0.067  Score=45.79  Aligned_cols=33  Identities=27%  Similarity=0.540  Sum_probs=29.6

Q ss_pred             CeEEEECcCCCHHHHHHHHhh------ccCeEEEEEecC
Q 020533          187 KNVLVVGSGNSGMEIALDLAN------HAAKTSLVVRSP  219 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~------~~~~v~~~~r~~  219 (325)
                      -.|+|||+|.+|.-+|..|++      .|.+|.++.|..
T Consensus        33 ~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~   71 (380)
T d2gmha1          33 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAA   71 (380)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCC
Confidence            379999999999999999987      688999999975

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.57  E-value=0.076  Score=40.14  Aligned_cols=32  Identities=31%  Similarity=0.434  Sum_probs=29.5

Q ss_pred             eEEEE-CcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          188 NVLVV-GSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       188 ~v~Vv-G~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      +|+|| |+|..|.-+|..|++.|.+|++..|++
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58899 679999999999999999999999986

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.53  E-value=0.02  Score=45.33  Aligned_cols=25  Identities=28%  Similarity=0.469  Sum_probs=22.7

Q ss_pred             eEEEECcCCCHHHHHHHHhhccCeE
Q 020533          188 NVLVVGSGNSGMEIALDLANHAAKT  212 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~~v  212 (325)
                      +|+|||+|.+|+-+|..|++.|.+|
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v   26 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSV   26 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTT
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCc
Confidence            6999999999999999999998644

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.49  E-value=0.16  Score=42.67  Aligned_cols=35  Identities=14%  Similarity=0.160  Sum_probs=31.2

Q ss_pred             CCCeEEEECC-ChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            6 AGVEVIMVGA-GTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         6 ~~~~v~IIGa-G~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      +.++|+|.|| |+.|-.++..|.++|++|+++|+..
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~   49 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKK   49 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence            3578999994 9999999999999999999999754

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=90.38  E-value=0.14  Score=38.77  Aligned_cols=38  Identities=21%  Similarity=0.288  Sum_probs=33.2

Q ss_pred             CCCCCCeEEEECcCCCHHHHHHHHhhccC-eEEEEEecC
Q 020533          182 KPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSP  219 (325)
Q Consensus       182 ~~~~~~~v~VvG~G~s~~e~a~~l~~~~~-~v~~~~r~~  219 (325)
                      .++++|+|+|+|+|-+|.-++..|...|. +++++.|++
T Consensus        14 ~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~   52 (182)
T d1vi2a1          14 FDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD   52 (182)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccch
Confidence            45678999999999999999999999875 689999886

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=90.33  E-value=0.13  Score=38.35  Aligned_cols=34  Identities=24%  Similarity=0.368  Sum_probs=28.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~   40 (325)
                      ...|+|+|+|+.|+.++..+...|. .+++.|+++
T Consensus        33 g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~   67 (172)
T d1h2ba2          33 GAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE   67 (172)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             CCEEEEeCCChHHHHHHHHHHhhcCcccccccchh
Confidence            4579999999999999999988886 566677775

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=90.28  E-value=0.095  Score=42.16  Aligned_cols=33  Identities=15%  Similarity=0.334  Sum_probs=30.4

Q ss_pred             CeEEEECC-ChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            8 VEVIMVGA-GTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGa-G~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ++|+|.|| |..|-.++..|.++|++|+.++++.
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            47999998 9999999999999999999998865

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=90.20  E-value=0.2  Score=41.78  Aligned_cols=35  Identities=14%  Similarity=0.081  Sum_probs=31.5

Q ss_pred             CCCeEEEECC-ChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            6 AGVEVIMVGA-GTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         6 ~~~~v~IIGa-G~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      .++.|+|+|| |..|-.++..|.++|++|.++-|+.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~   37 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSL   37 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCc
Confidence            3578999997 9999999999999999999998764

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=89.99  E-value=0.17  Score=40.44  Aligned_cols=38  Identities=18%  Similarity=0.279  Sum_probs=33.6

Q ss_pred             CCCCCeEEEECcCC-CHHHHHHHHhhccCeEEEEEecCC
Q 020533          183 PYGGKNVLVVGSGN-SGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       183 ~~~~~~v~VvG~G~-s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                      +++||.|+|.|++. +|.++|..|++.|.+|.++.|+..
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~   40 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVE   40 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSC
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            47899999999775 899999999999999999988763

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=89.88  E-value=0.21  Score=37.30  Aligned_cols=35  Identities=14%  Similarity=0.182  Sum_probs=29.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~~   41 (325)
                      ...|+|+|+|..|+.++..++..|. +|++++.++.
T Consensus        29 GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~   64 (176)
T d2jhfa2          29 GSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKD   64 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHH
Confidence            4569999999999999999999986 7778887764

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=89.82  E-value=0.1  Score=44.17  Aligned_cols=32  Identities=28%  Similarity=0.435  Sum_probs=29.8

Q ss_pred             eEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .++|||+|.+|+=+|..|++.|.+|.++++.+
T Consensus         4 D~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~   35 (360)
T d1kdga1           4 DYIIVGAGPGGIIAADRLSEAGKKVLLLERGG   35 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHhhCCCeEEEEEccC
Confidence            58999999999999999999999999999874

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=89.79  E-value=0.2  Score=37.82  Aligned_cols=35  Identities=20%  Similarity=0.220  Sum_probs=32.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      .+.|.|||.|..|-.+|..|...|.+|..+|+...
T Consensus        42 gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~   76 (181)
T d1qp8a1          42 GEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK   76 (181)
T ss_dssp             TCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CceEEEeccccccccceeeeecccccccccccccc
Confidence            56899999999999999999999999999998753

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=89.75  E-value=0.14  Score=39.18  Aligned_cols=39  Identities=15%  Similarity=0.193  Sum_probs=34.1

Q ss_pred             CCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          181 GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       181 ~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      ..++.|++|.|||.|.+|-++|..+...|.+|....+..
T Consensus        44 ~~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~   82 (193)
T d1mx3a1          44 AARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYL   82 (193)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTS
T ss_pred             ceeeeCceEEEeccccccccceeeeeccccceeeccCcc
Confidence            356789999999999999999999999999998776654

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=89.59  E-value=0.12  Score=39.71  Aligned_cols=37  Identities=22%  Similarity=0.136  Sum_probs=32.5

Q ss_pred             CCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEec
Q 020533          182 KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRS  218 (325)
Q Consensus       182 ~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~  218 (325)
                      .++.|++|.|||.|.+|-++|..+...|.+|..+.+.
T Consensus        39 ~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~   75 (197)
T d1j4aa1          39 REVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIF   75 (197)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             ccccCCeEEEecccccchhHHHhHhhhcccccccCcc
Confidence            4577999999999999999999999999999776544

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=89.53  E-value=0.12  Score=39.76  Aligned_cols=38  Identities=26%  Similarity=0.267  Sum_probs=34.0

Q ss_pred             CCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          182 KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       182 ~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .++.+++|.|||.|.+|-.+|..+...|.+|..+.+.+
T Consensus        41 ~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~   78 (199)
T d1dxya1          41 KELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYP   78 (199)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             ccccceeeeeeecccccccccccccccceeeeccCCcc
Confidence            46778999999999999999999999999998887754

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=89.48  E-value=0.21  Score=33.42  Aligned_cols=37  Identities=14%  Similarity=0.162  Sum_probs=32.1

Q ss_pred             CCCCCeEEEECCChHHHHH-HHHHHhcCCCeEEEecCC
Q 020533            4 QAAGVEVIMVGAGTSGLAT-AACLSLQSIPYVILEREN   40 (325)
Q Consensus         4 ~~~~~~v~IIGaG~~Gl~~-a~~L~~~g~~v~v~e~~~   40 (325)
                      +...+++-+||-|=+|+++ |..|.++|++|+--|...
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~   42 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD   42 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            3456789999999999988 888999999999999875

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=89.39  E-value=0.084  Score=40.38  Aligned_cols=33  Identities=21%  Similarity=0.345  Sum_probs=29.9

Q ss_pred             CeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      ++|+|+|+|.-|.-+|..|++.|.+|++..|.+
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~   40 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   40 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence            579999999999999999999999999988753

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=89.37  E-value=0.19  Score=40.89  Aligned_cols=39  Identities=23%  Similarity=0.288  Sum_probs=33.7

Q ss_pred             CCCCCCCeEEEECcC---CCHHHHHHHHhhccCeEEEEEecC
Q 020533          181 GKPYGGKNVLVVGSG---NSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       181 ~~~~~~~~v~VvG~G---~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      +.+++||+++|.|++   -+|..+|..|++.|.+|.+..|.+
T Consensus         3 ~~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~   44 (297)
T d1d7oa_           3 PIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVP   44 (297)
T ss_dssp             CCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHH
T ss_pred             CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCch
Confidence            457889999999976   379999999999999999988753

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=89.27  E-value=0.21  Score=38.89  Aligned_cols=36  Identities=22%  Similarity=0.358  Sum_probs=30.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSI-PYVILERENC   41 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~~   41 (325)
                      ...+|++.|||.+|+..|..|.+.+. ++.++|+...
T Consensus        25 ~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GL   61 (222)
T d1vl6a1          25 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGI   61 (222)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEE
T ss_pred             hhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeE
Confidence            34689999999999999999999887 6888888753

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.78  E-value=0.15  Score=39.11  Aligned_cols=35  Identities=17%  Similarity=0.395  Sum_probs=31.9

Q ss_pred             CCeEEEEC-cCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533          186 GKNVLVVG-SGNSGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       186 ~~~v~VvG-~G~s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                      -|+|+|+| +|.+|..++..|.+.|.+|+++.|++.
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~   38 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS   38 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChh
Confidence            47899999 699999999999999999999999874

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=88.42  E-value=0.22  Score=36.74  Aligned_cols=36  Identities=22%  Similarity=0.265  Sum_probs=33.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      ..+.++|+|=|..|-.+|..|+..|.+|+|.|..|.
T Consensus        22 aGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi   57 (163)
T d1v8ba1          22 SGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPI   57 (163)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred             cCCEEEEecccccchhHHHHHHhCCCEEEEEecCch
Confidence            357899999999999999999999999999999983

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=88.38  E-value=0.27  Score=39.23  Aligned_cols=37  Identities=24%  Similarity=0.304  Sum_probs=33.0

Q ss_pred             CCCCCeEEEECcCC-CHHHHHHHHhhccCeEEEEEecC
Q 020533          183 PYGGKNVLVVGSGN-SGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       183 ~~~~~~v~VvG~G~-s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      +++||.++|.|++. +|..+|..|++.|.+|.+..|+.
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLD   39 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            57899999999774 88999999999999999999874

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.37  E-value=0.24  Score=40.66  Aligned_cols=33  Identities=12%  Similarity=0.238  Sum_probs=29.8

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHhcCCCeEEEecC
Q 020533            7 GVEVIMVGA-GTSGLATAACLSLQSIPYVILERE   39 (325)
Q Consensus         7 ~~~v~IIGa-G~~Gl~~a~~L~~~g~~v~v~e~~   39 (325)
                      +++|+|.|| |+.|-.++..|.++|++|+.+|+.
T Consensus         1 kKKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~   34 (312)
T d2b69a1           1 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF   34 (312)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence            468999998 899999999999999999999863

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.33  E-value=0.14  Score=40.27  Aligned_cols=32  Identities=22%  Similarity=0.414  Sum_probs=26.9

Q ss_pred             eEEEECcCCCHHHHHHHHhhcc---CeEEEEEecC
Q 020533          188 NVLVVGSGNSGMEIALDLANHA---AKTSLVVRSP  219 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~---~~v~~~~r~~  219 (325)
                      +|+|||+|+.|+.+|..+++.+   .+|+++.+..
T Consensus         3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~   37 (233)
T d1xdia1           3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   37 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC
Confidence            7999999999999988877765   4688998754

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.28  E-value=0.21  Score=43.29  Aligned_cols=33  Identities=21%  Similarity=0.433  Sum_probs=30.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCC-CeEEEecCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~   40 (325)
                      .+|+|||+|--|..+|..|...|+ +++|+|...
T Consensus        38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~   71 (426)
T d1yovb1          38 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT   71 (426)
T ss_dssp             CCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            579999999999999999999999 899999764

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=88.09  E-value=0.2  Score=40.10  Aligned_cols=38  Identities=21%  Similarity=0.431  Sum_probs=33.7

Q ss_pred             CCCCCeEEEECcCC-CHHHHHHHHhhccCeEEEEEecCC
Q 020533          183 PYGGKNVLVVGSGN-SGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       183 ~~~~~~v~VvG~G~-s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                      +++||.++|.|++. +|..+|..|++.|.+|.+..|+..
T Consensus         6 ~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   44 (260)
T d1h5qa_           6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAA   44 (260)
T ss_dssp             CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCT
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            57899999999775 899999999999999999999863

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=87.92  E-value=0.25  Score=41.01  Aligned_cols=32  Identities=25%  Similarity=0.309  Sum_probs=29.1

Q ss_pred             eEEEECC-ChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            9 EVIMVGA-GTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         9 ~v~IIGa-G~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      +|+|+|| |+.|-.++..|.++|++|+++|+-.
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~   34 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLC   34 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            6999997 8999999999999999999998643

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=87.89  E-value=0.28  Score=39.01  Aligned_cols=37  Identities=30%  Similarity=0.447  Sum_probs=31.9

Q ss_pred             CCCCCeEEEECcC---CCHHHHHHHHhhccCeEEEEEecC
Q 020533          183 PYGGKNVLVVGSG---NSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       183 ~~~~~~v~VvG~G---~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      +++||.++|.|++   -.|..+|..|++.|.+|.+..|+.
T Consensus         5 ~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~   44 (256)
T d1ulua_           5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE   44 (256)
T ss_dssp             CCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcH
Confidence            5789999999975   379999999999999998877764

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.86  E-value=0.17  Score=38.18  Aligned_cols=31  Identities=16%  Similarity=0.343  Sum_probs=28.6

Q ss_pred             eEEEECcCCCHHHHHHHHhhccCeEEEEEec
Q 020533          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRS  218 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~  218 (325)
                      +|+|||+|+-|.-+|..|++.|.+|++..|.
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~   32 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTE   32 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            5899999999999999999999999998774

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.83  E-value=0.5  Score=35.14  Aligned_cols=40  Identities=28%  Similarity=0.304  Sum_probs=33.9

Q ss_pred             CCCCCCCCeEEEECcCC-CHHHHHHHHhhccCeEEEEEecC
Q 020533          180 NGKPYGGKNVLVVGSGN-SGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       180 ~~~~~~~~~v~VvG~G~-s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      ...+++||+++|||-+. .|.-+|..|++.++.|+++....
T Consensus        23 ~g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~   63 (171)
T d1edza1          23 EGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNN   63 (171)
T ss_dssp             TTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSE
T ss_pred             ccCCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEecccc
Confidence            34578999999999664 69999999999999999887654

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=87.82  E-value=0.29  Score=38.68  Aligned_cols=37  Identities=27%  Similarity=0.290  Sum_probs=33.2

Q ss_pred             CCCCCeEEEECcCC-CHHHHHHHHhhccCeEEEEEecC
Q 020533          183 PYGGKNVLVVGSGN-SGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       183 ~~~~~~v~VvG~G~-s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .++||.++|.|++. +|..+|..|++.|.+|.+..|+.
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~   39 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREE   39 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            46799999999775 89999999999999999999875

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=87.66  E-value=0.27  Score=39.79  Aligned_cols=35  Identities=29%  Similarity=0.358  Sum_probs=31.2

Q ss_pred             CCeEEEECc-CCCHHHHHHHHhhccCeEEEEEecCC
Q 020533          186 GKNVLVVGS-GNSGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       186 ~~~v~VvG~-G~s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                      -++|+|+|+ |..|..++..|.+.|.+|+++.|++.
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   38 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV   38 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence            357999995 99999999999999999999999763

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=87.62  E-value=0.26  Score=37.87  Aligned_cols=36  Identities=28%  Similarity=0.252  Sum_probs=32.3

Q ss_pred             CCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEe
Q 020533          182 KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVR  217 (325)
Q Consensus       182 ~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r  217 (325)
                      ..+.|++|+|-|.|+.|.-+|..|.+.|.+|++...
T Consensus        23 ~~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~   58 (201)
T d1c1da1          23 GSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADT   58 (201)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecc
Confidence            468899999999999999999999999999876544

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=87.57  E-value=0.32  Score=40.42  Aligned_cols=35  Identities=17%  Similarity=0.078  Sum_probs=31.4

Q ss_pred             CCeEEEEC-CChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            7 GVEVIMVG-AGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIG-aG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      .++|+|.| +|+.|..++..|.++|++|..+++...
T Consensus         8 ~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~   43 (356)
T d1rkxa_           8 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP   43 (356)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            47899999 589999999999999999999998653

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.46  E-value=0.37  Score=39.39  Aligned_cols=43  Identities=19%  Similarity=0.277  Sum_probs=36.3

Q ss_pred             CCCCCCCCCCCeEEEECcCC-CHHHHHHHHhhccCeEEEEEecC
Q 020533          177 QYKNGKPYGGKNVLVVGSGN-SGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       177 ~~~~~~~~~~~~v~VvG~G~-s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      +|..+..++||.++|.|++. +|..+|..|++.|.+|.+..|+.
T Consensus         3 ~y~~~g~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~   46 (297)
T d1yxma1           3 SYLAPGLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKL   46 (297)
T ss_dssp             CSBCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            35555678999999999764 89999999999999999999864

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=87.44  E-value=0.3  Score=36.11  Aligned_cols=34  Identities=18%  Similarity=0.186  Sum_probs=28.9

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHhcCC-CeEEEecCC
Q 020533            7 GVEVIMVGA-GTSGLATAACLSLQSI-PYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGa-G~~Gl~~a~~L~~~g~-~v~v~e~~~   40 (325)
                      ...|+|+|+ |+.|+.++..+...|. +|+++++++
T Consensus        28 g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~   63 (170)
T d1jvba2          28 TKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE   63 (170)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH
T ss_pred             CCEEEEEeccccceeeeeecccccccccccccccch
Confidence            457999995 9999999999998885 788888776

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=87.35  E-value=0.34  Score=39.41  Aligned_cols=38  Identities=18%  Similarity=0.316  Sum_probs=33.7

Q ss_pred             CCCCCCeEEEECc-CCCHHHHHHHHhhccCeEEEEEecC
Q 020533          182 KPYGGKNVLVVGS-GNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       182 ~~~~~~~v~VvG~-G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      ..++||.++|.|+ +-+|..+|..|++.|.+|.+..|+.
T Consensus        21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~   59 (294)
T d1w6ua_          21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   59 (294)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            5788999999995 4688999999999999999999875

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=87.33  E-value=0.25  Score=39.45  Aligned_cols=37  Identities=24%  Similarity=0.229  Sum_probs=31.6

Q ss_pred             CCCCCeEEEECc-CC--CHHHHHHHHhhccCeEEEEEecC
Q 020533          183 PYGGKNVLVVGS-GN--SGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       183 ~~~~~~v~VvG~-G~--s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .++||+++|.|+ |.  +|..+|..|++.|.+|.+..|+.
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~   42 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR   42 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCCh
Confidence            367899999995 44  68999999999999999988875

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=87.16  E-value=0.36  Score=36.56  Aligned_cols=39  Identities=18%  Similarity=0.174  Sum_probs=34.5

Q ss_pred             CCCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          181 GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       181 ~~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      ..++.++++.|||.|.+|.++|..+...|.+|....|..
T Consensus        39 ~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~   77 (188)
T d2naca1          39 AYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHR   77 (188)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSC
T ss_pred             ceeccccceeeccccccchhhhhhhhccCceEEEEeecc
Confidence            456789999999999999999999999999988887764

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=87.06  E-value=0.28  Score=39.42  Aligned_cols=35  Identities=26%  Similarity=0.394  Sum_probs=31.6

Q ss_pred             CCeEEEECc-CCCHHHHHHHHhhccCeEEEEEecCC
Q 020533          186 GKNVLVVGS-GNSGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       186 ~~~v~VvG~-G~s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                      -|+|+|.|+ |..|-.++..|.+.|.+|+.+.|.+.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~   38 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVREST   38 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCc
Confidence            478999995 99999999999999999999999764

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=87.03  E-value=0.34  Score=38.86  Aligned_cols=36  Identities=25%  Similarity=0.278  Sum_probs=31.9

Q ss_pred             CCCCeEEEECcC---CCHHHHHHHHhhccCeEEEEEecC
Q 020533          184 YGGKNVLVVGSG---NSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       184 ~~~~~v~VvG~G---~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      ++||+++|.|++   -+|..+|..|++.|.+|.+..|+.
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~   41 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE   41 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            679999999964   379999999999999999999875

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=86.78  E-value=0.29  Score=38.91  Aligned_cols=36  Identities=22%  Similarity=0.366  Sum_probs=31.8

Q ss_pred             CCCCeEEEECcCC---CHHHHHHHHhhccCeEEEEEecC
Q 020533          184 YGGKNVLVVGSGN---SGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       184 ~~~~~v~VvG~G~---s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      ++||.++|.|++.   .|..+|..|++.|.+|.+..|+.
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~   41 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND   41 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCH
Confidence            6789999999764   67899999999999999999875

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=86.71  E-value=0.17  Score=41.44  Aligned_cols=32  Identities=34%  Similarity=0.726  Sum_probs=28.0

Q ss_pred             CeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      -.|+|||+|.+|+-.|..+++.| +|.++.+.+
T Consensus         8 ~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~   39 (305)
T d1chua2           8 CDVLIIGSGAAGLSLALRLADQH-QVIVLSKGP   39 (305)
T ss_dssp             CSEEEECCSHHHHHHHHHHTTTS-CEEEECSSC
T ss_pred             CCEEEECccHHHHHHHHHhhcCC-CEEEEECCC
Confidence            36999999999999999888877 899998875

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=86.65  E-value=0.46  Score=39.38  Aligned_cols=36  Identities=19%  Similarity=0.117  Sum_probs=30.6

Q ss_pred             CCCCCeEEEECC-ChHHHHHHHHHHhcCCCeEEEecC
Q 020533            4 QAAGVEVIMVGA-GTSGLATAACLSLQSIPYVILERE   39 (325)
Q Consensus         4 ~~~~~~v~IIGa-G~~Gl~~a~~L~~~g~~v~v~e~~   39 (325)
                      .+..+.|+|.|| |..|..++..|.++|++|..+.|+
T Consensus         8 ~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~   44 (342)
T d1y1pa1           8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARS   44 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCC
Confidence            344679999997 899999999999999999877654

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=86.63  E-value=0.23  Score=42.36  Aligned_cols=40  Identities=20%  Similarity=0.439  Sum_probs=33.1

Q ss_pred             CCCCCCCC--eEEEECcCCCHHHHHHHHhhccC-eEEEEEecC
Q 020533          180 NGKPYGGK--NVLVVGSGNSGMEIALDLANHAA-KTSLVVRSP  219 (325)
Q Consensus       180 ~~~~~~~~--~v~VvG~G~s~~e~a~~l~~~~~-~v~~~~r~~  219 (325)
                      ++....++  .++|||+|.+|+-+|..|++.+. +|.++++.+
T Consensus        16 ~p~~~~~~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~   58 (391)
T d1gpea1          16 DPSKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGF   58 (391)
T ss_dssp             CGGGTTTCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSC
T ss_pred             CcccccCCeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence            34445555  59999999999999999999984 899999886

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.59  E-value=0.38  Score=38.01  Aligned_cols=37  Identities=30%  Similarity=0.450  Sum_probs=32.6

Q ss_pred             CCCCCeEEEECcC-CCHHHHHHHHhhccCeEEEEEecC
Q 020533          183 PYGGKNVLVVGSG-NSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       183 ~~~~~~v~VvG~G-~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      +++||.++|.|++ -+|..+|..|++.|.+|.+..|+.
T Consensus         2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (242)
T d1cyda_           2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN   39 (242)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4789999999976 488999999999999999999874

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=86.59  E-value=0.43  Score=36.57  Aligned_cols=35  Identities=17%  Similarity=0.341  Sum_probs=31.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         6 ~~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ..++|+|-|.|-.|..+|..|.+.|.++++.|.+.
T Consensus        26 ~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~   60 (201)
T d1c1da1          26 DGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDT   60 (201)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchH
Confidence            45789999999999999999999999999887553

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=86.43  E-value=0.38  Score=36.84  Aligned_cols=35  Identities=11%  Similarity=0.067  Sum_probs=31.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      .+.|.|||.|-.|-.+|..|...|.+|..+|+...
T Consensus        45 ~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~   79 (199)
T d1dxya1          45 QQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPM   79 (199)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             ceeeeeeecccccccccccccccceeeeccCCccc
Confidence            46899999999999999999999999999998653

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.39  E-value=0.19  Score=41.89  Aligned_cols=33  Identities=30%  Similarity=0.501  Sum_probs=27.0

Q ss_pred             CeEEEECcCCCHHHHHHHHhh----ccCeEEEEEecC
Q 020533          187 KNVLVVGSGNSGMEIALDLAN----HAAKTSLVVRSP  219 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~----~~~~v~~~~r~~  219 (325)
                      -.|+|||+|.+|+=.|..+++    .|.+|.++.+.+
T Consensus        22 ~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~   58 (356)
T d1jnra2          22 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAA   58 (356)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSC
T ss_pred             cCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCC
Confidence            369999999999888877764    578999998754

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.19  E-value=0.45  Score=35.29  Aligned_cols=34  Identities=24%  Similarity=0.300  Sum_probs=29.2

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGA-GTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGa-G~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ...|+|+|| |+.|+.+...+...|.+++++++++
T Consensus        29 g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~   63 (174)
T d1yb5a2          29 GESVLVHGASGGVGLAACQIARAYGLKILGTAGTE   63 (174)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEEeccccccccccccccccCcccccccccc
Confidence            457999996 9999999988888999998888665

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=86.07  E-value=0.26  Score=41.06  Aligned_cols=36  Identities=28%  Similarity=0.320  Sum_probs=33.1

Q ss_pred             CCCCeEEEEC-cCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          184 YGGKNVLVVG-SGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       184 ~~~~~v~VvG-~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      +++|+|+|.| +|..|..++..|.+.|.+|..+.|..
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~   42 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTA   42 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            5789999999 77999999999999999999998875

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=86.04  E-value=0.23  Score=42.23  Aligned_cols=38  Identities=18%  Similarity=0.420  Sum_probs=31.6

Q ss_pred             CCCCCC--eEEEECcCCCHHHHHHHHhhcc-CeEEEEEecC
Q 020533          182 KPYGGK--NVLVVGSGNSGMEIALDLANHA-AKTSLVVRSP  219 (325)
Q Consensus       182 ~~~~~~--~v~VvG~G~s~~e~a~~l~~~~-~~v~~~~r~~  219 (325)
                      .+..++  .++|||+|.+|+=+|..|++.+ .+|.++++.+
T Consensus        11 ~~~~~~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~   51 (385)
T d1cf3a1          11 KDVSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   51 (385)
T ss_dssp             GGTTTCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSC
T ss_pred             ccccCCeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCC
Confidence            344444  6899999999999999999987 5899999875

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=85.92  E-value=0.26  Score=36.26  Aligned_cols=32  Identities=31%  Similarity=0.269  Sum_probs=29.4

Q ss_pred             eEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      +|.|||.|..|.-+|..|.+.|.+|+.+.|++
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            58999999999999999999999999888775

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.91  E-value=0.34  Score=35.82  Aligned_cols=39  Identities=31%  Similarity=0.218  Sum_probs=32.4

Q ss_pred             CCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533          182 KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       182 ~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                      ...+|++|+|+|+|..|.-.+..+...|.+|..+.+++.
T Consensus        24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~   62 (168)
T d1piwa2          24 GCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR   62 (168)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             CcCCCCEEEEECCCCcchhHHHHhhhccccccccccchh
Confidence            344689999999999998877777778999998888873

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.86  E-value=0.48  Score=37.45  Aligned_cols=38  Identities=29%  Similarity=0.339  Sum_probs=33.7

Q ss_pred             CCCCCCeEEEECcCC-CHHHHHHHHhhccCeEEEEEecC
Q 020533          182 KPYGGKNVLVVGSGN-SGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       182 ~~~~~~~v~VvG~G~-s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      ..+.||.++|.|++. .|.++|..+++.|.+|.+..|+.
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~   41 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINK   41 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            457899999999775 89999999999999999999875

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.85  E-value=0.17  Score=37.10  Aligned_cols=35  Identities=20%  Similarity=0.305  Sum_probs=26.3

Q ss_pred             CCCeEEEECC-ChHHHHHHHHHHhcCC-------CeEEEecCC
Q 020533            6 AGVEVIMVGA-GTSGLATAACLSLQSI-------PYVILEREN   40 (325)
Q Consensus         6 ~~~~v~IIGa-G~~Gl~~a~~L~~~g~-------~v~v~e~~~   40 (325)
                      ++.+|+|||| |..|.++|..|...+.       ...++|...
T Consensus         2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~   44 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITP   44 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGG
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCcc
Confidence            3468999996 9999999999986542       356666554

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.85  E-value=0.48  Score=37.36  Aligned_cols=37  Identities=19%  Similarity=0.258  Sum_probs=33.0

Q ss_pred             CCCCCeEEEECcCC-CHHHHHHHHhhccCeEEEEEecC
Q 020533          183 PYGGKNVLVVGSGN-SGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       183 ~~~~~~v~VvG~G~-s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .++||.++|.|++. .|..+|..|++.|.+|.++.|+.
T Consensus         2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~   39 (248)
T d2o23a1           2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPN   39 (248)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            46899999999764 88999999999999999999876

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.81  E-value=0.8  Score=32.87  Aligned_cols=37  Identities=24%  Similarity=0.302  Sum_probs=29.3

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHhcC---CCeEEEecCCCCC
Q 020533            7 GVEVIMVGA-GTSGLATAACLSLQS---IPYVILERENCYA   43 (325)
Q Consensus         7 ~~~v~IIGa-G~~Gl~~a~~L~~~g---~~v~v~e~~~~~G   43 (325)
                      +.+|+|||| |..|..+.+-|.+++   .++..+-.+...|
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~G   42 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAG   42 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCC
Confidence            468999999 999999999998654   3777776666555

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=85.76  E-value=0.23  Score=38.91  Aligned_cols=32  Identities=19%  Similarity=0.462  Sum_probs=27.8

Q ss_pred             eEEEECcCCCHHHHHHHHhhccC-eEEEEEecC
Q 020533          188 NVLVVGSGNSGMEIALDLANHAA-KTSLVVRSP  219 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~-~v~~~~r~~  219 (325)
                      .|+|||+|+.|..+|..+++.|. +|.++.+..
T Consensus         5 DvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~   37 (240)
T d1feca1           5 DLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQK   37 (240)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHCCCEEEEESCS
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCEEEEEEEec
Confidence            69999999999999999999885 588887665

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=85.74  E-value=0.45  Score=37.97  Aligned_cols=37  Identities=32%  Similarity=0.522  Sum_probs=32.4

Q ss_pred             CCCCCeEEEECcCC-CHHHHHHHHhhccCeEEEEEecC
Q 020533          183 PYGGKNVLVVGSGN-SGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       183 ~~~~~~v~VvG~G~-s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .++||.++|.|++. +|..+|..|++.|.+|.++.|+.
T Consensus         2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNR   39 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            46899999999764 88999999999999999998874

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.55  E-value=0.5  Score=36.55  Aligned_cols=34  Identities=29%  Similarity=0.492  Sum_probs=28.5

Q ss_pred             CCeEEEECCChHHHHHHHHHH--------------------hcCC-CeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLS--------------------LQSI-PYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~--------------------~~g~-~v~v~e~~~   40 (325)
                      ..+|+|||+|-.++=+|+.|.                    +.|. +|.++-|+.
T Consensus        39 gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg   93 (216)
T d1lqta1          39 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG   93 (216)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred             CceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECC
Confidence            468999999999999999887                    4566 689998775

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=85.49  E-value=0.37  Score=38.44  Aligned_cols=38  Identities=34%  Similarity=0.521  Sum_probs=32.5

Q ss_pred             CCCCCCeEEEECcCC-CHHHHHHHHhhccCeEEEEEecC
Q 020533          182 KPYGGKNVLVVGSGN-SGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       182 ~~~~~~~v~VvG~G~-s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      ..+.||.++|.|++. +|.++|..|++.|.+|.+..|+.
T Consensus         2 ~~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~   40 (259)
T d1ja9a_           2 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSS   40 (259)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCC
Confidence            357899999999664 78999999999999999887765

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=85.48  E-value=0.26  Score=31.43  Aligned_cols=33  Identities=21%  Similarity=0.124  Sum_probs=29.6

Q ss_pred             CeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      |+|.|+|+|.-|.-++.+..++|.++.++...+
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~   34 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDA   34 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTS
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCC
Confidence            689999999999999999999999998887654

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.42  E-value=0.54  Score=36.81  Aligned_cols=35  Identities=11%  Similarity=0.152  Sum_probs=30.1

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            7 GVEVIMVGA-GTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGa-G~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      .+.|+|.|| |-.|.++|+.|+++|.+|.++|+...
T Consensus         2 gK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~   37 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN   37 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            468999998 45789999999999999999987653

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=85.33  E-value=0.39  Score=38.32  Aligned_cols=37  Identities=27%  Similarity=0.378  Sum_probs=32.8

Q ss_pred             CCCCCeEEEECcC-CCHHHHHHHHhhccCeEEEEEecC
Q 020533          183 PYGGKNVLVVGSG-NSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       183 ~~~~~~v~VvG~G-~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      +++||.++|.|+. -.|..+|..|++.|.+|.+..|++
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~   40 (258)
T d1ae1a_           3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNE   40 (258)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4689999999965 478999999999999999999975

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=85.27  E-value=0.68  Score=34.12  Aligned_cols=38  Identities=24%  Similarity=0.327  Sum_probs=33.7

Q ss_pred             CCCCCCeEEEECcCC-CHHHHHHHHhhccCeEEEEEecC
Q 020533          182 KPYGGKNVLVVGSGN-SGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       182 ~~~~~~~v~VvG~G~-s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .++.||+++|||.+. .|.-++..|.+.++.||++....
T Consensus        33 i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t   71 (166)
T d1b0aa1          33 IDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT   71 (166)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC
T ss_pred             cccccceEEEEeccccccHHHHHHHHHhhcccccccccc
Confidence            467899999999775 89999999999999999998766

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=85.15  E-value=0.29  Score=35.46  Aligned_cols=34  Identities=24%  Similarity=0.248  Sum_probs=31.3

Q ss_pred             CCeEEEEC-cCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          186 GKNVLVVG-SGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       186 ~~~v~VvG-~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      -++|+||| .|..|.-+|..|.+.|.+|+++.|..
T Consensus         9 ~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2           9 IHKIVIVGGYGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence            47999999 79999999999999999999998876

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=85.09  E-value=0.33  Score=40.70  Aligned_cols=31  Identities=29%  Similarity=0.513  Sum_probs=28.3

Q ss_pred             eEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .++|||+|.+|+-+|..|++. .+|.++++.+
T Consensus        28 D~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~   58 (351)
T d1ju2a1          28 DYVIVGGGTSGCPLAATLSEK-YKVLVLERGS   58 (351)
T ss_dssp             EEEEECCSTTHHHHHHHHTTT-SCEEEECSSB
T ss_pred             cEEEECccHHHHHHHHHhcCC-CCEEEEecCC
Confidence            799999999999999999986 7899999875

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=85.01  E-value=0.48  Score=37.90  Aligned_cols=35  Identities=14%  Similarity=0.125  Sum_probs=29.6

Q ss_pred             CCeEEEECC-C--hHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            7 GVEVIMVGA-G--TSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGa-G--~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      .+.++|.|| |  =.|.++|+.|+++|.+|++.++++.
T Consensus         5 gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~   42 (274)
T d2pd4a1           5 GKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES   42 (274)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            467899996 4  3789999999999999999998753

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=85.01  E-value=0.52  Score=35.95  Aligned_cols=34  Identities=15%  Similarity=0.064  Sum_probs=31.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      .+.|.|||-|-.|-.+|..|...|.+|..+|+..
T Consensus        43 gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~   76 (197)
T d1j4aa1          43 DQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFR   76 (197)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCeEEEecccccchhHHHhHhhhcccccccCccc
Confidence            4689999999999999999999999999998654

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=84.94  E-value=0.54  Score=36.62  Aligned_cols=43  Identities=21%  Similarity=0.252  Sum_probs=33.1

Q ss_pred             CCCCCeEEEECc-----------------CCCHHHHHHHHhhccCeEEEEEecCCeeech
Q 020533          183 PYGGKNVLVVGS-----------------GNSGMEIALDLANHAAKTSLVVRSPVHVLSR  225 (325)
Q Consensus       183 ~~~~~~v~VvG~-----------------G~s~~e~a~~l~~~~~~v~~~~r~~~~~~p~  225 (325)
                      +++|++|+|-+|                 |..|..+|.++..+|.+|+++........|.
T Consensus         3 dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~~~~p~   62 (223)
T d1u7za_           3 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLPTPP   62 (223)
T ss_dssp             TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCCCCT
T ss_pred             ccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhcccccCccc
Confidence            456677766655                 4479999999999999999998877544443

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.85  E-value=0.66  Score=34.38  Aligned_cols=38  Identities=21%  Similarity=0.277  Sum_probs=34.0

Q ss_pred             CCCCCCeEEEECcCC-CHHHHHHHHhhccCeEEEEEecC
Q 020533          182 KPYGGKNVLVVGSGN-SGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       182 ~~~~~~~v~VvG~G~-s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .++.||+|+|||.+. .|.-+|..|.+.|+.|+++....
T Consensus        35 i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t   73 (170)
T d1a4ia1          35 VPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT   73 (170)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred             cccccceEEEEecCCccchHHHHHHHhccCceEEEeccc
Confidence            467899999999765 89999999999999999998876

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=84.85  E-value=0.5  Score=37.27  Aligned_cols=31  Identities=19%  Similarity=0.268  Sum_probs=25.2

Q ss_pred             EEEECC-ChHHHHHHHHHHhcCCCeEEEecCC
Q 020533           10 VIMVGA-GTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus        10 v~IIGa-G~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      |+|-|| +-.|.++|+.|+++|.+|++.++++
T Consensus         4 vlITGas~GIG~aiA~~la~~Ga~V~~~~~~~   35 (257)
T d1fjha_           4 IVISGCATGIGAATRKVLEAAGHQIVGIDIRD   35 (257)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            455565 4578889999999999999999875

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.68  E-value=0.35  Score=38.83  Aligned_cols=38  Identities=34%  Similarity=0.488  Sum_probs=33.2

Q ss_pred             CCCCCCeEEEECcCC-CHHHHHHHHhhccCeEEEEEecC
Q 020533          182 KPYGGKNVLVVGSGN-SGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       182 ~~~~~~~v~VvG~G~-s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      ..++||+++|.|++. .|..+|..|++.|.+|.++.|+.
T Consensus        10 ~~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~   48 (269)
T d1xu9a_          10 EMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSK   48 (269)
T ss_dssp             GGGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            337899999999775 89999999999999999999864

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=84.68  E-value=0.6  Score=35.43  Aligned_cols=34  Identities=18%  Similarity=0.179  Sum_probs=31.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      .+.|.|||.|-.|-.+|..|...|.+|..+|+..
T Consensus        49 gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~   82 (193)
T d1mx3a1          49 GETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYL   82 (193)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTS
T ss_pred             CceEEEeccccccccceeeeeccccceeeccCcc
Confidence            4689999999999999999999999999998764

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=84.67  E-value=0.52  Score=37.37  Aligned_cols=37  Identities=27%  Similarity=0.376  Sum_probs=32.5

Q ss_pred             CCCCCeEEEECcCC-CHHHHHHHHhhccCeEEEEEecC
Q 020533          183 PYGGKNVLVVGSGN-SGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       183 ~~~~~~v~VvG~G~-s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      +++||.++|.|++. +|..+|..|++.|.+|.+..|+.
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~   39 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNL   39 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            46799999999764 88999999999999999998874

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=84.62  E-value=0.65  Score=37.56  Aligned_cols=33  Identities=21%  Similarity=0.188  Sum_probs=27.0

Q ss_pred             CeEEEEC-CChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            8 VEVIMVG-AGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         8 ~~v~IIG-aG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      +.++|-| +|-.|.++|+.|+++|.+|++.+++.
T Consensus        26 K~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~   59 (294)
T d1w6ua_          26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   59 (294)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            4455555 46778899999999999999999876

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.57  E-value=0.42  Score=35.06  Aligned_cols=33  Identities=18%  Similarity=0.257  Sum_probs=30.2

Q ss_pred             CeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      ++|.+||.|..|.-+|..|.+.|.+|+++.|++
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~   34 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ   34 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECch
Confidence            579999999999999999999999999888775

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.49  E-value=0.35  Score=43.02  Aligned_cols=33  Identities=21%  Similarity=0.411  Sum_probs=29.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhcCC-CeEEEecCC
Q 020533            8 VEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGaG~~Gl~~a~~L~~~g~-~v~v~e~~~   40 (325)
                      .+|+|||+|..|..+|+.|...|+ +++|+|...
T Consensus        26 s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~   59 (529)
T d1yova1          26 AHVCLINATATGTEILKNLVLPGIGSFTIIDGNQ   59 (529)
T ss_dssp             CEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSB
T ss_pred             CCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCc
Confidence            589999999999999999999998 789998643

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=84.45  E-value=0.54  Score=32.17  Aligned_cols=34  Identities=26%  Similarity=0.431  Sum_probs=31.0

Q ss_pred             CCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       186 ~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      ..+|.|+|+|.-|..++.+..++|.++.++..++
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~   44 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYA   44 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESST
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            4689999999999999999999999999888775

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.38  E-value=0.55  Score=38.25  Aligned_cols=34  Identities=18%  Similarity=0.121  Sum_probs=30.8

Q ss_pred             CeEEEECC-ChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            8 VEVIMVGA-GTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         8 ~~v~IIGa-G~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      ++|+|.|| |+.|-.++..|.++|++|..+++...
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~   35 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS   35 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCC
Confidence            47999998 99999999999999999999998764

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.37  E-value=0.87  Score=37.51  Aligned_cols=34  Identities=21%  Similarity=0.200  Sum_probs=30.4

Q ss_pred             CeEEEECC-ChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            8 VEVIMVGA-GTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         8 ~~v~IIGa-G~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      ++|+|.|| |+.|-.++..|.+.|++|+++|+...
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~~   37 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHN   37 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCc
Confidence            47999997 99999999999999999999997543

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=84.34  E-value=0.53  Score=36.83  Aligned_cols=36  Identities=25%  Similarity=0.357  Sum_probs=31.8

Q ss_pred             CCCCeEEEECcCC-CHHHHHHHHhhccCeEEEEEecC
Q 020533          184 YGGKNVLVVGSGN-SGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       184 ~~~~~v~VvG~G~-s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      +++|.++|.|++. .|..+|..|++.|.+|.+..|+.
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~   38 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE   38 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            5789999999764 89999999999999999999874

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=84.31  E-value=0.79  Score=32.06  Aligned_cols=43  Identities=21%  Similarity=0.366  Sum_probs=34.5

Q ss_pred             CCCeEEEECcCC-----------CHHHHHHHHhhccCeEEEEEecCCeeechhh
Q 020533          185 GGKNVLVVGSGN-----------SGMEIALDLANHAAKTSLVVRSPVHVLSREM  227 (325)
Q Consensus       185 ~~~~v~VvG~G~-----------s~~e~a~~l~~~~~~v~~~~r~~~~~~p~~~  227 (325)
                      ..|+|+|+|+|.           ++++++.+|.+.|.++.++--.|.-+...++
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TVstd~d   59 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMTDPE   59 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGGGCGG
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhhhcChh
Confidence            458999999997           5677888899999999999888866655443

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=84.25  E-value=0.65  Score=35.02  Aligned_cols=34  Identities=26%  Similarity=0.271  Sum_probs=31.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ...|.|||.|-.|...|..|...|.+|..+|+..
T Consensus        44 ~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~   77 (188)
T d2naca1          44 AMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHR   77 (188)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSC
T ss_pred             ccceeeccccccchhhhhhhhccCceEEEEeecc
Confidence            5689999999999999999999999999999865

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.11  E-value=0.45  Score=37.40  Aligned_cols=38  Identities=32%  Similarity=0.520  Sum_probs=33.5

Q ss_pred             CCCCCCeEEEECcCC-CHHHHHHHHhhccCeEEEEEecC
Q 020533          182 KPYGGKNVLVVGSGN-SGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       182 ~~~~~~~v~VvG~G~-s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      ..+++|.++|.|++. +|..+|..|++.|.+|.+..|+.
T Consensus         3 psl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~   41 (237)
T d1uzma1           3 PPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGS   41 (237)
T ss_dssp             CCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            357899999999774 89999999999999999999975

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=84.02  E-value=0.59  Score=36.83  Aligned_cols=36  Identities=19%  Similarity=0.172  Sum_probs=31.9

Q ss_pred             CCCCeEEEECcCC-CHHHHHHHHhhccCeEEEEEecC
Q 020533          184 YGGKNVLVVGSGN-SGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       184 ~~~~~v~VvG~G~-s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      +++|.++|.|++. +|..+|..|++.|.+|.+..|+.
T Consensus         3 L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~   39 (242)
T d1ulsa_           3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEE   39 (242)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            6789999999764 89999999999999999999874

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=83.95  E-value=0.5  Score=35.01  Aligned_cols=34  Identities=18%  Similarity=0.248  Sum_probs=28.9

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGA-GTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGa-G~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ...|+|.|| |+.|+.+...+...|.+|+.+++++
T Consensus        28 g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~   62 (171)
T d1iz0a2          28 GEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRP   62 (171)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCEEEEEeccccchhhhhhhhcccccccccccccc
Confidence            456899896 9999999888888999998888765

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=83.94  E-value=0.28  Score=35.83  Aligned_cols=31  Identities=23%  Similarity=0.340  Sum_probs=25.5

Q ss_pred             eEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      +|.+||-|..|..+|++|.+.|+.+ ++.+..
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~   32 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTF   32 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEE-EECSST
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCH
Confidence            5999999999999999999988755 455443

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=83.91  E-value=0.61  Score=37.29  Aligned_cols=37  Identities=16%  Similarity=0.135  Sum_probs=32.3

Q ss_pred             CCCCCeEEEECcCC-CHHHHHHHHhhccCeEEEEEecC
Q 020533          183 PYGGKNVLVVGSGN-SGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       183 ~~~~~~v~VvG~G~-s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .++||.++|.|++. +|..+|..|++.|.+|.++.|+.
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIAD   40 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            57899999999664 88999999999999999998864

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=83.79  E-value=0.6  Score=37.18  Aligned_cols=37  Identities=27%  Similarity=0.319  Sum_probs=32.5

Q ss_pred             CCCCCeEEEECcCC-CHHHHHHHHhhccCeEEEEEecC
Q 020533          183 PYGGKNVLVVGSGN-SGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       183 ~~~~~~v~VvG~G~-s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      +++||.++|.|++. +|..+|..|++.|.+|.+..|+.
T Consensus         5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   42 (259)
T d2ae2a_           5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQ   42 (259)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            46799999999764 88999999999999999998864

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=83.71  E-value=0.52  Score=35.62  Aligned_cols=38  Identities=13%  Similarity=0.144  Sum_probs=33.8

Q ss_pred             CCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          182 KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       182 ~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .++.+++|.|+|.|.+|..+|..+...|.+|....+..
T Consensus        40 ~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~   77 (188)
T d1sc6a1          40 FEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIEN   77 (188)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             ccccceEEEEeecccchhhhhhhcccccceEeeccccc
Confidence            45778999999999999999999999999998887654

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=83.66  E-value=0.41  Score=39.78  Aligned_cols=36  Identities=25%  Similarity=0.252  Sum_probs=32.2

Q ss_pred             CCCeEEEEC-cCCCHHHHHHHHhhccCeEEEEEecCC
Q 020533          185 GGKNVLVVG-SGNSGMEIALDLANHAAKTSLVVRSPV  220 (325)
Q Consensus       185 ~~~~v~VvG-~G~s~~e~a~~l~~~~~~v~~~~r~~~  220 (325)
                      +.|+|+|+| +|..|..++..|.+.|.+|+.+.|++.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~   38 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLK   38 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcc
Confidence            358899999 599999999999999999999999763

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.62  E-value=0.65  Score=38.10  Aligned_cols=33  Identities=18%  Similarity=0.129  Sum_probs=29.7

Q ss_pred             CeEEEECC-ChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            8 VEVIMVGA-GTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         8 ~~v~IIGa-G~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      +.++|.|| |+.|-.++..|.++|++|+.+++..
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~   35 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRS   35 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCC
Confidence            56788887 9999999999999999999999865

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=83.61  E-value=0.34  Score=39.84  Aligned_cols=33  Identities=27%  Similarity=0.508  Sum_probs=28.4

Q ss_pred             CeEEEECcCCCHHHHHHHHhhc--cCeEEEEEecC
Q 020533          187 KNVLVVGSGNSGMEIALDLANH--AAKTSLVVRSP  219 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~--~~~v~~~~r~~  219 (325)
                      -.|+|||+|.+|+-.|..+++.  +.+|.++.+.+
T Consensus         6 ~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~   40 (311)
T d1kf6a2           6 ADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVY   40 (311)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSC
T ss_pred             cCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCC
Confidence            3699999999999999999887  56899998764

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.55  E-value=0.52  Score=39.79  Aligned_cols=30  Identities=33%  Similarity=0.504  Sum_probs=28.1

Q ss_pred             CeEEEECC-ChHHHHHHHHHHhcCCCeEEEe
Q 020533            8 VEVIMVGA-GTSGLATAACLSLQSIPYVILE   37 (325)
Q Consensus         8 ~~v~IIGa-G~~Gl~~a~~L~~~g~~v~v~e   37 (325)
                      ++|+|.|| |+.|-.++..|.++|++|+++|
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            57999997 9999999999999999999998

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.46  E-value=0.59  Score=35.89  Aligned_cols=31  Identities=26%  Similarity=0.218  Sum_probs=26.7

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHhcCCCeEEEe
Q 020533            7 GVEVIMVGA-GTSGLATAACLSLQSIPYVILE   37 (325)
Q Consensus         7 ~~~v~IIGa-G~~Gl~~a~~L~~~g~~v~v~e   37 (325)
                      ..+|+|.|| |..|..++..|.++|.++.+++
T Consensus         3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~   34 (252)
T d2q46a1           3 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKG   34 (252)
T ss_dssp             CCEEEEESTTSTTHHHHHHHHHHTTTTCEEEE
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCcEEEEE
Confidence            358999995 9999999999999998876654

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=83.39  E-value=0.67  Score=37.40  Aligned_cols=40  Identities=15%  Similarity=0.164  Sum_probs=31.7

Q ss_pred             CCCCCCCCeEEEECCC---hHHHHHHHHHHhcCCCeEEEecCC
Q 020533            1 MKEQAAGVEVIMVGAG---TSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         1 M~~~~~~~~v~IIGaG---~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      |+..=+.+.++|-||+   -.|.++|+.|+++|.+|++.++.+
T Consensus         2 ~~~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~   44 (297)
T d1d7oa_           2 LPIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVP   44 (297)
T ss_dssp             CCCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHH
T ss_pred             CCcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCch
Confidence            3333346789999986   489999999999999999988653

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.25  E-value=0.58  Score=37.22  Aligned_cols=38  Identities=21%  Similarity=0.299  Sum_probs=32.9

Q ss_pred             CCCCCCeEEEECcC-CCHHHHHHHHhhccCeEEEEEecC
Q 020533          182 KPYGGKNVLVVGSG-NSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       182 ~~~~~~~v~VvG~G-~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      ..+++|.++|.|++ -+|..+|..|++.|.+|.+..|+.
T Consensus         6 ~~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~   44 (257)
T d1xg5a_           6 ERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTV   44 (257)
T ss_dssp             GGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            45789999999976 478999999999999999998864

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=83.21  E-value=0.43  Score=35.15  Aligned_cols=37  Identities=32%  Similarity=0.379  Sum_probs=31.7

Q ss_pred             CCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       183 ~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      ...+.+|+|+|+|..|.=++..+...|.+|..+.+++
T Consensus        24 ~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~   60 (170)
T d1e3ja2          24 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP   60 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEEcccccchhhHhhHhhhcccccccchHH
Confidence            3457899999999999998888888899998888775

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=83.20  E-value=0.98  Score=33.22  Aligned_cols=34  Identities=18%  Similarity=0.256  Sum_probs=27.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCC-eEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIP-YVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~-v~v~e~~~   40 (325)
                      .-.|+|+|+|..|+.++..+...|.+ |++.++++
T Consensus        29 G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~   63 (176)
T d2fzwa2          29 GSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINK   63 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             CCEEEEecchhHHHHHHHHHHHHhcCceEEEcccH
Confidence            45799999999999999999999975 55555554

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=83.16  E-value=0.36  Score=35.24  Aligned_cols=25  Identities=24%  Similarity=0.339  Sum_probs=21.7

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHhcCC
Q 020533            7 GVEVIMVGA-GTSGLATAACLSLQSI   31 (325)
Q Consensus         7 ~~~v~IIGa-G~~Gl~~a~~L~~~g~   31 (325)
                      +.+|+|||| |..|.++|..|...++
T Consensus         4 p~KV~IiGA~G~VG~~~a~~l~~~~l   29 (154)
T d1y7ta1           4 PVRVAVTGAAGQIGYSLLFRIAAGEM   29 (154)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhccc
Confidence            358999997 9999999999988654

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.15  E-value=0.95  Score=35.58  Aligned_cols=40  Identities=30%  Similarity=0.374  Sum_probs=31.5

Q ss_pred             CCCCCCCCeEEEECCC-hHHHHHHHHHHhcCCCeEEEecCC
Q 020533            1 MKEQAAGVEVIMVGAG-TSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         1 M~~~~~~~~v~IIGaG-~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      |+..=..+.++|.||+ -.|.++|+.|+++|.+|++.+|+.
T Consensus         1 M~~~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~   41 (244)
T d1pr9a_           1 MELFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ   41 (244)
T ss_dssp             CCCCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            5543345678888875 467889999999999999999875

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.14  E-value=0.61  Score=35.56  Aligned_cols=31  Identities=23%  Similarity=0.128  Sum_probs=28.0

Q ss_pred             eEEEECcCCCHHHHHHHHhhccCeEEEEEec
Q 020533          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRS  218 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~  218 (325)
                      +|.|||.|..|.-+|..+++.|.+|+.+...
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n   32 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVS   32 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCC
Confidence            5899999999999999999999999877654

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=83.07  E-value=0.67  Score=36.64  Aligned_cols=37  Identities=35%  Similarity=0.479  Sum_probs=32.3

Q ss_pred             CCCCCeEEEECcC-CCHHHHHHHHhhccCeEEEEEecC
Q 020533          183 PYGGKNVLVVGSG-NSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       183 ~~~~~~v~VvG~G-~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .++||.++|.|++ -.|..+|..|++.|.+|.+..|+.
T Consensus         2 ~l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~   39 (248)
T d2d1ya1           2 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRP   39 (248)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3679999999955 588999999999999999999875

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=83.05  E-value=0.75  Score=36.29  Aligned_cols=37  Identities=24%  Similarity=0.289  Sum_probs=32.6

Q ss_pred             CCCCCeEEEECcCC-CHHHHHHHHhhccCeEEEEEecC
Q 020533          183 PYGGKNVLVVGSGN-SGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       183 ~~~~~~v~VvG~G~-s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .++||.++|.|++. .|..+|..|++.|.+|.+..|++
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~   39 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVP   39 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            47789999999764 88999999999999999999876

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=83.04  E-value=0.39  Score=33.68  Aligned_cols=31  Identities=19%  Similarity=0.246  Sum_probs=26.3

Q ss_pred             eEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            9 EVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         9 ~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      .++|+|.|..|..++..|.  +.+++++|.++.
T Consensus         2 HivI~G~g~~g~~l~~~L~--~~~i~vi~~d~~   32 (129)
T d2fy8a1           2 HVVICGWSESTLECLRELR--GSEVFVLAEDEN   32 (129)
T ss_dssp             CEEEESCCHHHHHHHHTSC--GGGEEEEESCTT
T ss_pred             EEEEECCCHHHHHHHHHHc--CCCCEEEEcchH
Confidence            5899999999999999995  557888988764

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=83.00  E-value=0.57  Score=33.87  Aligned_cols=33  Identities=15%  Similarity=0.351  Sum_probs=30.3

Q ss_pred             CeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       187 ~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .+++|+|.|..|..++..|.+.+.+++++...+
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~   36 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence            479999999999999999999999999988765

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.99  E-value=0.64  Score=36.64  Aligned_cols=37  Identities=30%  Similarity=0.417  Sum_probs=32.6

Q ss_pred             CCCCCeEEEECcC-CCHHHHHHHHhhccCeEEEEEecC
Q 020533          183 PYGGKNVLVVGSG-NSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       183 ~~~~~~v~VvG~G-~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .++||+++|.|++ -.|..+|..|++.|.+|.+..|+.
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~   41 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ   41 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            4789999999966 478999999999999999998874

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=82.99  E-value=0.67  Score=36.77  Aligned_cols=33  Identities=27%  Similarity=0.327  Sum_probs=26.3

Q ss_pred             CeEEE-ECCC-hHHHHHHHHHHhcCCCeEEEecCC
Q 020533            8 VEVIM-VGAG-TSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         8 ~~v~I-IGaG-~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ++|++ -||+ -.|.++|..|+++|.+|++.+++.
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~   35 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYND   35 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            35654 4664 478889999999999999999875

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=82.85  E-value=0.42  Score=38.24  Aligned_cols=37  Identities=32%  Similarity=0.442  Sum_probs=32.4

Q ss_pred             CCCCCeEEEECcC-CCHHHHHHHHhhccCeEEEEEecC
Q 020533          183 PYGGKNVLVVGSG-NSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       183 ~~~~~~v~VvG~G-~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      +++||.++|.|++ -+|..+|..|++.|.+|.+..|+.
T Consensus         4 dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~   41 (261)
T d1geea_           4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSK   41 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            5789999998865 589999999999999999999875

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=82.56  E-value=0.63  Score=36.97  Aligned_cols=34  Identities=15%  Similarity=0.196  Sum_probs=28.1

Q ss_pred             CCeEEEECC-Ch--HHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGA-GT--SGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGa-G~--~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      .+.++|.|| |-  .|.++|+.|+++|.+|++.+++.
T Consensus         6 gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~   42 (268)
T d2h7ma1           6 GKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR   42 (268)
T ss_dssp             TCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCCh
Confidence            467899995 54  67888999999999999988764

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=82.49  E-value=0.36  Score=37.41  Aligned_cols=31  Identities=23%  Similarity=0.487  Sum_probs=26.5

Q ss_pred             eEEEECcCCCHHHHHHHHhhccC-eEEEEEec
Q 020533          188 NVLVVGSGNSGMEIALDLANHAA-KTSLVVRS  218 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~-~v~~~~r~  218 (325)
                      .|+|||+|+.|..+|..+++.+. +|.++.+.
T Consensus         5 DviIIG~GpaGl~aA~~aa~~g~k~V~iie~~   36 (238)
T d1aoga1           5 DLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQ   36 (238)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTSCCCEEEEESC
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCEEEEEEee
Confidence            58999999999999999999885 57777664

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=82.14  E-value=0.41  Score=35.82  Aligned_cols=36  Identities=25%  Similarity=0.427  Sum_probs=30.1

Q ss_pred             CCCCeEEEECcCCCHHHHHHHHhhccC-eEEEEEecC
Q 020533          184 YGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSP  219 (325)
Q Consensus       184 ~~~~~v~VvG~G~s~~e~a~~l~~~~~-~v~~~~r~~  219 (325)
                      .+|++|+|+|+|.+|.-++..+...|. +|+++.+++
T Consensus        27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~   63 (182)
T d1vj0a2          27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP   63 (182)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred             CCCCEEEEECCCccchhheeccccccccccccccccc
Confidence            468999999999999888888888886 688888766

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=82.07  E-value=0.7  Score=34.98  Aligned_cols=38  Identities=13%  Similarity=0.145  Sum_probs=32.7

Q ss_pred             CCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          182 KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       182 ~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .++.++++.|||.|.+|-.+|..+...|.+|....+..
T Consensus        43 ~~l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~   80 (191)
T d1gdha1          43 EKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHR   80 (191)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSC
T ss_pred             ceecccceEEeecccchHHHHHHHHhhccccccccccc
Confidence            45678999999999999999999999999987766544

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.89  E-value=0.55  Score=37.44  Aligned_cols=37  Identities=27%  Similarity=0.339  Sum_probs=32.2

Q ss_pred             CCCCCeEEEECcCC-CHHHHHHHHhhccCeEEEEEecC
Q 020533          183 PYGGKNVLVVGSGN-SGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       183 ~~~~~~v~VvG~G~-s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .++||.++|.|++. +|..+|..|++.|.+|.++.|+.
T Consensus         5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~   42 (259)
T d1xq1a_           5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNE   42 (259)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            45799999999764 78999999999999999999874

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=81.72  E-value=0.61  Score=36.76  Aligned_cols=37  Identities=35%  Similarity=0.373  Sum_probs=31.7

Q ss_pred             CCCCCeEEEECcC-CCHHHHHHHHhhccCeEEEEEecC
Q 020533          183 PYGGKNVLVVGSG-NSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       183 ~~~~~~v~VvG~G-~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      +++||.++|.|++ -.|..+|..|++.|.+|.+..|+.
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~   38 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSE   38 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            4678989998866 478999999999999999988875

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=81.69  E-value=0.62  Score=34.06  Aligned_cols=32  Identities=22%  Similarity=0.296  Sum_probs=29.5

Q ss_pred             eEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       188 ~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      +|.|||.|..|.-+|..|.+.|.+|+++.|++
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~   33 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   33 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            58999999999999999999999999888775

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=81.66  E-value=0.58  Score=37.54  Aligned_cols=37  Identities=27%  Similarity=0.440  Sum_probs=31.9

Q ss_pred             CCCCCeEEEECcC-CCHHHHHHHHhhccCeEEEEEecC
Q 020533          183 PYGGKNVLVVGSG-NSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       183 ~~~~~~v~VvG~G-~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .++||.++|.|++ -+|..+|..|++.|.+|.+..|+.
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~   39 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSS   39 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4678999998865 478999999999999999999875

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=81.57  E-value=0.82  Score=36.33  Aligned_cols=36  Identities=39%  Similarity=0.504  Sum_probs=31.7

Q ss_pred             CCCCeEEEECcCC-CHHHHHHHHhhccCeEEEEEecC
Q 020533          184 YGGKNVLVVGSGN-SGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       184 ~~~~~v~VvG~G~-s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      ++||.++|.|++. +|..+|..|++.|.+|.+..|+.
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   38 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSS   38 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            6789999999764 78999999999999999999875

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=81.51  E-value=0.68  Score=36.56  Aligned_cols=35  Identities=9%  Similarity=0.220  Sum_probs=28.5

Q ss_pred             CCeEEEECCCh---HHHHHHHHHHhcCCCeEEEecCCC
Q 020533            7 GVEVIMVGAGT---SGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGaG~---~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      .+.++|.||+-   -|.++|+.|+++|.+|++.++++.
T Consensus         5 gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~   42 (258)
T d1qsga_           5 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK   42 (258)
T ss_dssp             TCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            45688888754   467899999999999999998764

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.41  E-value=0.8  Score=37.67  Aligned_cols=34  Identities=21%  Similarity=0.220  Sum_probs=29.5

Q ss_pred             CeE-EEECC-ChHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            8 VEV-IMVGA-GTSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         8 ~~v-~IIGa-G~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      ++| +|.|| |+.|-.++..|.++|++|+.+++...
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~   36 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSS   36 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCc
Confidence            367 67787 79999999999999999999999753

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.40  E-value=0.84  Score=35.94  Aligned_cols=37  Identities=22%  Similarity=0.171  Sum_probs=32.3

Q ss_pred             CCCCCeEEEECcCC-CHHHHHHHHhhccCeEEEEEecC
Q 020533          183 PYGGKNVLVVGSGN-SGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       183 ~~~~~~v~VvG~G~-s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .++||.++|.|++. +|..+|..|++.|.+|.+..|++
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~   40 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILD   40 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            46789999999754 78999999999999999999875

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.39  E-value=0.5  Score=37.34  Aligned_cols=37  Identities=22%  Similarity=0.267  Sum_probs=32.1

Q ss_pred             CCCCCeEEEECcC-CCHHHHHHHHhhccCeEEEEEecC
Q 020533          183 PYGGKNVLVVGSG-NSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       183 ~~~~~~v~VvG~G-~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .++||.++|.|++ -.|..+|..|++.|.+|.++.|++
T Consensus         3 ~l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~   40 (245)
T d2ag5a1           3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINE   40 (245)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            3778999998855 578999999999999999999875

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=81.31  E-value=1  Score=33.85  Aligned_cols=34  Identities=18%  Similarity=0.213  Sum_probs=31.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ...|.|||.|..|-.+|..|...|.+|..+|+..
T Consensus        44 ~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~   77 (188)
T d1sc6a1          44 GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIEN   77 (188)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             ceEEEEeecccchhhhhhhcccccceEeeccccc
Confidence            4689999999999999999999999999999765

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=81.29  E-value=0.83  Score=31.59  Aligned_cols=40  Identities=23%  Similarity=0.371  Sum_probs=32.6

Q ss_pred             CCeEEEECcCC-----------CHHHHHHHHhhccCeEEEEEecCCeeech
Q 020533          186 GKNVLVVGSGN-----------SGMEIALDLANHAAKTSLVVRSPVHVLSR  225 (325)
Q Consensus       186 ~~~v~VvG~G~-----------s~~e~a~~l~~~~~~v~~~~r~~~~~~p~  225 (325)
                      .|+|+|+|+|.           ++++++.+|.+.|.++.++--.|.-+...
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTVstd   54 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTD   54 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSSTTS
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhhhcC
Confidence            47899999997           56778888999999999998888655543

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.28  E-value=0.57  Score=34.33  Aligned_cols=37  Identities=14%  Similarity=0.072  Sum_probs=31.2

Q ss_pred             CCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       183 ~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      ..++++|+|+|+|..|.=++..+...|.+|..+.+++
T Consensus        25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~   61 (166)
T d1llua2          25 ARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDD   61 (166)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence            3458899999999999888888888898988887765

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=81.24  E-value=0.72  Score=35.96  Aligned_cols=34  Identities=15%  Similarity=0.143  Sum_probs=28.8

Q ss_pred             CeEEEECCC-hHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            8 VEVIMVGAG-TSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         8 ~~v~IIGaG-~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      .+|+|.||+ -.|.++|+.|+++|.+|++++++..
T Consensus         3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~   37 (235)
T d1ooea_           3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN   37 (235)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            368999884 6688899999999999999998763

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=81.23  E-value=0.53  Score=37.49  Aligned_cols=36  Identities=33%  Similarity=0.336  Sum_probs=30.7

Q ss_pred             CCCCeEEEECcCC-CHHHHHHHHhhccCeEEEEEecC
Q 020533          184 YGGKNVLVVGSGN-SGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       184 ~~~~~v~VvG~G~-s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      ++||.++|.|++. +|..+|..|++.|.+|.+..|+.
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~   38 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGD   38 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4688888888664 78899999999999999999875

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=81.10  E-value=0.62  Score=37.01  Aligned_cols=36  Identities=22%  Similarity=0.320  Sum_probs=31.5

Q ss_pred             CCCCeEEEECcC-CCHHHHHHHHhhccCeEEEEEecC
Q 020533          184 YGGKNVLVVGSG-NSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       184 ~~~~~v~VvG~G-~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      ++||.++|.|++ -+|..+|..|++.|.+|.+..|+.
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (256)
T d1k2wa_           3 LDGKTALITGSARGIGRAFAEAYVREGARVAIADINL   39 (256)
T ss_dssp             TTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            678999999975 478999999999999999999864

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.07  E-value=0.71  Score=34.70  Aligned_cols=38  Identities=29%  Similarity=0.183  Sum_probs=32.6

Q ss_pred             CCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          182 KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       182 ~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      ....++++.|+|.|.+|-++|..+...|.+|....|..
T Consensus        40 ~~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~   77 (184)
T d1ygya1          40 TEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYV   77 (184)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTS
T ss_pred             ccccceeeeeccccchhHHHHHHhhhccceEEeecCCC
Confidence            45678999999999999999999999999887665543

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=81.02  E-value=0.5  Score=37.64  Aligned_cols=35  Identities=17%  Similarity=0.303  Sum_probs=28.7

Q ss_pred             CCeEEEECCCh-HHHHHHHHHHhcCCCeEEEecCCC
Q 020533            7 GVEVIMVGAGT-SGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         7 ~~~v~IIGaG~-~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      .+.++|.||+- .|.++|+.|+++|.+|++.+++..
T Consensus         9 gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   44 (260)
T d1h5qa_           9 NKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAA   44 (260)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            45677777754 788899999999999999999863

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=80.99  E-value=0.65  Score=36.76  Aligned_cols=36  Identities=19%  Similarity=0.262  Sum_probs=29.3

Q ss_pred             CCCeEEEECCC---hHHHHHHHHHHhcCCCeEEEecCCC
Q 020533            6 AGVEVIMVGAG---TSGLATAACLSLQSIPYVILERENC   41 (325)
Q Consensus         6 ~~~~v~IIGaG---~~Gl~~a~~L~~~g~~v~v~e~~~~   41 (325)
                      +.+.++|.||+   =.|.++|+.|+++|.+|++.++++.
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~   45 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER   45 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHH
Confidence            34678888864   2689999999999999999887753

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=80.97  E-value=0.69  Score=36.61  Aligned_cols=37  Identities=24%  Similarity=0.374  Sum_probs=32.0

Q ss_pred             CCCCCeEEEECcCC-CHHHHHHHHhhccCeEEEEEecC
Q 020533          183 PYGGKNVLVVGSGN-SGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       183 ~~~~~~v~VvG~G~-s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .++||.++|.|++. +|..+|..|++.|.+|.+..|+.
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   40 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHS   40 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            47889999999654 78999999999999999998864

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=80.81  E-value=0.89  Score=33.84  Aligned_cols=23  Identities=22%  Similarity=0.104  Sum_probs=20.2

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHhc
Q 020533            7 GVEVIMVGA-GTSGLATAACLSLQ   29 (325)
Q Consensus         7 ~~~v~IIGa-G~~Gl~~a~~L~~~   29 (325)
                      ..+|+|+|| |..|.+++..|+..
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g   47 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASG   47 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHT
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcC
Confidence            457999996 99999999999874

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.69  E-value=1  Score=37.04  Aligned_cols=34  Identities=18%  Similarity=0.049  Sum_probs=30.2

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGA-GTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGa-G~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      ++.|+|.|| |..|-.++..|.+.|++|..+|+..
T Consensus        16 ~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~   50 (341)
T d1sb8a_          16 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFA   50 (341)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            467888887 9999999999999999999999744

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=80.57  E-value=0.63  Score=34.54  Aligned_cols=34  Identities=15%  Similarity=0.296  Sum_probs=24.3

Q ss_pred             CCeEEEECCChHHHHHHH--HHHhc----CCCeEEEecCC
Q 020533            7 GVEVIMVGAGTSGLATAA--CLSLQ----SIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGaG~~Gl~~a~--~L~~~----g~~v~v~e~~~   40 (325)
                      ..+|+|||||-.|.+.+.  .|.+.    +.+++++|.++
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~   41 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDE   41 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCH
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCc
Confidence            468999999999866443  23322    34899999876

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=80.54  E-value=0.82  Score=35.70  Aligned_cols=35  Identities=26%  Similarity=0.283  Sum_probs=31.6

Q ss_pred             CCCCCCeEEEECcCCCHHHHHHHHhhccCeEEEEE
Q 020533          182 KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVV  216 (325)
Q Consensus       182 ~~~~~~~v~VvG~G~s~~e~a~~l~~~~~~v~~~~  216 (325)
                      ..+.|++|+|-|.|+.|..+|..|.+.|.+++...
T Consensus        35 ~~l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d   69 (230)
T d1leha1          35 DSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTD   69 (230)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEeec
Confidence            56789999999999999999999999999987653

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=80.48  E-value=0.6  Score=33.69  Aligned_cols=34  Identities=24%  Similarity=0.372  Sum_probs=28.7

Q ss_pred             CCeEEEECcCCCHHHHHHHHhhcc--CeEEEEEecC
Q 020533          186 GKNVLVVGSGNSGMEIALDLANHA--AKTSLVVRSP  219 (325)
Q Consensus       186 ~~~v~VvG~G~s~~e~a~~l~~~~--~~v~~~~r~~  219 (325)
                      .++|+|||+|..|.-+|..|+..+  .++.++.+..
T Consensus         5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            468999999999999999999876  5788877654

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.31  E-value=0.85  Score=36.06  Aligned_cols=38  Identities=29%  Similarity=0.488  Sum_probs=32.8

Q ss_pred             CCCCCCeEEEECcC-CCHHHHHHHHhhccCeEEEEEecC
Q 020533          182 KPYGGKNVLVVGSG-NSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       182 ~~~~~~~v~VvG~G-~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      ..++||.++|.|++ -.|..+|..|++.|.+|.+..|+.
T Consensus         2 ~rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (250)
T d1ydea1           2 TRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDE   40 (250)
T ss_dssp             CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            35789999999965 588999999999999999998864

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.22  E-value=1  Score=34.18  Aligned_cols=30  Identities=17%  Similarity=0.222  Sum_probs=25.5

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHhcCCCeEEE
Q 020533            7 GVEVIMVGA-GTSGLATAACLSLQSIPYVIL   36 (325)
Q Consensus         7 ~~~v~IIGa-G~~Gl~~a~~L~~~g~~v~v~   36 (325)
                      +++|+|.|| |..|-.++.+|.++|..+.|+
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~   32 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVI   32 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEE
Confidence            468999999 999999999999999844444

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=80.19  E-value=1  Score=37.18  Aligned_cols=37  Identities=30%  Similarity=0.299  Sum_probs=32.0

Q ss_pred             CCCCCeEEEEC-cCCCHHHHHHHHhhccCeEEEEEecC
Q 020533          183 PYGGKNVLVVG-SGNSGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       183 ~~~~~~v~VvG-~G~s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      ..+||+|+|.| +|..|..++..|.+.|.+|..+.|+.
T Consensus         8 ~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~   45 (342)
T d1y1pa1           8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSA   45 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCc
Confidence            34589999999 67899999999999999998888753

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=80.08  E-value=0.64  Score=36.88  Aligned_cols=37  Identities=27%  Similarity=0.340  Sum_probs=31.7

Q ss_pred             CCCCCeEEEECcCC-CHHHHHHHHhhccCeEEEEEecC
Q 020533          183 PYGGKNVLVVGSGN-SGMEIALDLANHAAKTSLVVRSP  219 (325)
Q Consensus       183 ~~~~~~v~VvG~G~-s~~e~a~~l~~~~~~v~~~~r~~  219 (325)
                      .++||.++|.|++. +|..+|..|++.|.+|.+..|+.
T Consensus         3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~   40 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINE   40 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            47889999988654 78899999999999999988864

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=80.02  E-value=0.69  Score=37.55  Aligned_cols=34  Identities=21%  Similarity=0.259  Sum_probs=29.6

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHhcCCCeEEEecCC
Q 020533            7 GVEVIMVGA-GTSGLATAACLSLQSIPYVILEREN   40 (325)
Q Consensus         7 ~~~v~IIGa-G~~Gl~~a~~L~~~g~~v~v~e~~~   40 (325)
                      +++|+|.|| |.-|-.++.+|.++|..+++++...
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~   36 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD   36 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCch
Confidence            458999998 9999999999999999988886554