Citrus Sinensis ID: 020535

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-----
Protein Sequence
MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVSEGEETVWSTISSFSDQPAETCSDAGKYSSHDSGWLAPLQII
Secondary Structure (PSIPRED)
ccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHcccccccccEEEEEEccccccccccccccEEEEEEccEEEEcccEEEEcccccccEEEEEEEEcccccEEEEEEcccccccccccccccEEEEEEEcccEEEcccccccccccccccccHHHHHHccccccHHHHHHHcccccHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEccccHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccHHHHHHHHHHccccccccccHHHcccHHHHHHHHHHHHHHcHHHHHHHHHHHHccHHHHHHHccHHHHHHHcHHHccccccEEEEccEccEcccHHHcccEEEEcccEEEEEEEEEEEEccccccEEEEEEEccHHHHHHcEEEEccccccEccccHHcccccccccEEEEEccccccHHHccccccccEEHHEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHccc
Coil and Loop (DISEMBL)
mtihsskhqddvdknarssyfnlpaldisvafpqatpaskfppcasdyyqfddLLTSEEQAVRMKVRECMEKEIAPIMAEYwekaefpfhvipklgALRVaggtikgygcpghsvTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCgseeqkqkyLPSLAQLNTIACWaltepaygsdasalnttatkveggwilegqkrwignstFADVLVIFARNTttnqingylvkkdapgltvtkIENKIglrivqngdillkkvfvpdedrlpgvnsfqdtskvsegeeTVWSTIssfsdqpaetcsdagkysshdsgwlaplqii
Flexible Loop (DISEMBL)
mtihsskhqddvdknARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNtttnqingylvkkdapgltVTKIenkiglrivqngdILLKKVfvpdedrlpgvnsfqdtskvsegEETVWStissfsdqpaETCSDAgkysshdsgwlaplqii
Low Complexity Region (SEG)
MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVSEGEETVWSTISSFSDQPAETCSDAGKYSSHDSGWLAPLQII
Disordered region (IsUnstruct)
*******************YFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPD**********************************************************
Disordered Region (DISOPRED)
*******************************************CASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVSEGEETVWSTISSFSDQPAETCSDAGKYSSHDSGWLAPLQII
Disordered Region (DISEMBL)
*************KNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSF*************************************DSGWLAPLQII
Disordered Region (DISPRO)
*******************YFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVSEGEETVWSTISSFSDQPAETCSDAGKYSSHDSGWLAP****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVSEGEETVWSTISSFSDQPAETCSDAGKYSSHDSGWLAPLQII
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	325	2.2.26 [Sep-21-2011]
Q96329	436	Acyl-coenzyme A oxidase 4	yes	no	0.870	0.649	0.795	1e-135
Q20772	409	Probable glutaryl-CoA deh	yes	no	0.713	0.567	0.361	6e-39
Q60759	438	Glutaryl-CoA dehydrogenas	yes	no	0.744	0.552	0.365	6e-35
Q2KHZ9	438	Glutaryl-CoA dehydrogenas	yes	no	0.695	0.515	0.375	6e-35
Q8HXX8	438	Glutaryl-CoA dehydrogenas	N/A	no	0.695	0.515	0.371	2e-34
Q92947	438	Glutaryl-CoA dehydrogenas	yes	no	0.695	0.515	0.375	3e-34
P81140	408	Glutaryl-CoA dehydrogenas	no	no	0.695	0.553	0.378	4e-33
P45857	379	Acyl-CoA dehydrogenase OS	yes	no	0.664	0.569	0.382	8e-33
P52042	379	Acyl-CoA dehydrogenase, s	yes	no	0.667	0.572	0.348	9e-30
Q54R47	420	Glutaryl-CoA dehydrogenas	no	no	0.747	0.578	0.325	3e-29

>sp|Q96329|ACOX4_ARATH Acyl-coenzyme A oxidase 4, peroxisomal OS=Arabidopsis thaliana GN=ACX4 PE=1 SV=1

 Score =  482 bits (1241), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 225/283 (79%), Positives = 249/283 (87%)

Query: 1   MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQ 60
           M + SS  +   +K  +SSYF+LP +++SVAFPQATPAS FPPC SDYY F+DLLT EEQ
Sbjct: 1   MAVLSSADRASNEKKVKSSYFDLPPMEMSVAFPQATPASTFPPCTSDYYHFNDLLTPEEQ 60

Query: 61  AVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAI 120
           A+R KVRECMEKE+APIM EYWEKAEFPFH+ PKLGA+ VAGG+IKGYGCPG S+T  AI
Sbjct: 61  AIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLSITANAI 120

Query: 121 AIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYG 180
           A AEIARVDASCSTFILVHSSL MLTIALCGSE QK+KYLPSLAQLNT+ACWALTEP  G
Sbjct: 121 ATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNG 180

Query: 181 SDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLT 240
           SDAS L TTATKVEGGW + GQKRWIGNSTFAD+L+IFARNTTTNQING++VKKDAPGL 
Sbjct: 181 SDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGLK 240

Query: 241 VTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKV 283
            TKI NKIGLR+VQNGDILL+ VFVPDEDRLPGVNSFQDTSKV
Sbjct: 241 ATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGVNSFQDTSKV 283

Catalyzes the desaturation of short-chain acyl-CoAs to 2-trans-enoyl-CoAs. Active on butyryl-CoA (C4), hexanoyl-CoA (C6), and octanoyl-CoA (C8). Has no activity as acyl-CoA dehydrogenase or on crotonyl-CoA (an unsaturated C4:1 carbocyclic ester) or glutaryl-CoA (a dicarboxylic ester).
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 3EC: .EC: 3EC: .EC: 6

>sp|Q20772|GCDH_CAEEL Probable glutaryl-CoA dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=F54D5.7 PE=1 SV=1

 Score =  161 bits (407), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 85/235 (36%), Positives = 134/235 (57%), Gaps = 3/235 (1%)

Query: 47  DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIK 106
           D +Q  D LT +E+++ +  RE  ++ + P + E +   +F   +IP++G++ + G   +
Sbjct: 24  DAFQLSDQLTEDERSLMLSAREYCQERLLPRVTEAYRTEKFDPSLIPEMGSMGLLGAPYQ 83

Query: 107 GYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQL 166
           GYGC G S  G  +   E+ RVD+   + + V +SL +  I   GSE+QKQKY+P LA  
Sbjct: 84  GYGCAGTSTVGYGLIAREVERVDSGYRSTMSVQTSLVIGPIYNYGSEDQKQKYIPDLASG 143

Query: 167 NTIACWALTEPAYGSDASALNTTAT--KVEGGWILEGQKRWIGNSTFADVLVIFARNTT- 223
             I C+ LTEP +GS+   + T AT  +    + L G K WI NS  +DV+V++AR+   
Sbjct: 144 KKIGCFGLTEPNHGSNPGGMETKATWDETTKTYKLNGSKTWISNSPVSDVMVVWARSARH 203

Query: 224 TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQ 278
            N+I G+++++   GLT  KIE K+ LR    G I +  V VP+E+ LP     Q
Sbjct: 204 NNKIKGFILERGMKGLTTPKIEGKLSLRASITGQIAMDDVPVPEENLLPNAEGLQ 258

Caenorhabditis elegans (taxid: 6239)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: 7

>sp|Q60759|GCDH_MOUSE Glutaryl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Gcdh PE=2 SV=2

 Score =  148 bits (373), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 91/249 (36%), Positives = 133/249 (53%), Gaps = 7/249 (2%)

Query: 34  QATPASKFPPCA--SDYYQFDDLLTSEEQAVRMKVRE-CMEKEIAPIMAEYWEKAEFPFH 90
           Q  PA    P     D    ++ LT++E+ +R   R  C E+ ++ I+     +  F   
Sbjct: 37  QIRPAKSSRPVFDWKDPLILEEQLTADEKLIRDTFRNYCQERLMSRILLANRNEV-FHRD 95

Query: 91  VIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALC 150
           ++ ++G L V G TIKGYGC G S     +   E+ RVD+   + + V SSL M  I   
Sbjct: 96  IVYEMGELGVLGPTIKGYGCAGVSSVAYGLLTRELERVDSGYRSMMSVQSSLVMHPIYTY 155

Query: 151 GSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATK--VEGGWILEGQKRWIGN 208
           GSEEQ+QKYLP LA+   + C+ LTEP +GSD   + T A        + L G K WI N
Sbjct: 156 GSEEQRQKYLPGLAKGELLGCFGLTEPNHGSDPGGMETRARHNPSNQSYTLSGTKTWITN 215

Query: 209 STFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDE 268
           S  AD+ +++AR    N I G++++K   GL+  +IE K  LR    G I++  V VP+E
Sbjct: 216 SPVADLFIVWAR-CEDNCIRGFILEKGMRGLSAPRIEGKFSLRASATGMIIMDSVEVPEE 274

Query: 269 DRLPGVNSF 277
           + LP V+S 
Sbjct: 275 NVLPNVSSL 283

Catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and CO(2) in the degradative pathway of L-lysine, L-hydroxylysine, and L-tryptophan metabolism. It uses electron transfer flavoprotein as its electron acceptor.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: 7

>sp|Q2KHZ9|GCDH_BOVIN Glutaryl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=GCDH PE=2 SV=1

 Score =  148 bits (373), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 86/229 (37%), Positives = 126/229 (55%), Gaps = 3/229 (1%)

Query: 51  FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGC 110
            ++ LT++E  +R   R   ++ + P +        F   +I ++G L + G TI+GY C
Sbjct: 56  LEEQLTADEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGMLGPTIQGYSC 115

Query: 111 PGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
            G S     +   E+ RVD+   + + V SSL M  I   GSEEQKQKYLP LA+   + 
Sbjct: 116 AGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMYPIYAYGSEEQKQKYLPRLAKGELLG 175

Query: 171 CWALTEPAYGSDASALNTTATK--VEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQIN 228
           C+ LTEP +GSD S + T A        +IL G K WI NS  AD+L+++AR    + I 
Sbjct: 176 CFGLTEPNHGSDPSGMETRARHNPSSRSYILSGSKTWITNSPVADLLIVWAR-CEDSCIR 234

Query: 229 GYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSF 277
           G+L++K   GL+  +IE K  LR    G I++  V VP+E+ LPGV+  
Sbjct: 235 GFLLEKGMRGLSTPRIEGKFSLRASSTGMIIMDDVEVPEENVLPGVSGL 283

Catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and CO(2) in the degradative pathway of L-lysine, L-hydroxylysine, and L-tryptophan metabolism. It uses electron transfer flavoprotein as its electron acceptor.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: 7

>sp|Q8HXX8|GCDH_MACFA Glutaryl-CoA dehydrogenase, mitochondrial OS=Macaca fascicularis GN=GCDH PE=2 SV=1

 Score =  146 bits (369), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 85/229 (37%), Positives = 124/229 (54%), Gaps = 3/229 (1%)

Query: 51  FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGC 110
            ++ LT++E  +R   R   ++ + P +        F   +I ++G L V G TIKGYGC
Sbjct: 56  LEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISQMGELGVLGPTIKGYGC 115

Query: 111 PGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
            G S     +   E+ RVD+   + + V S L M  I   GSEEQ+QKYLP LA+   + 
Sbjct: 116 AGVSSVAYGLLARELERVDSGYRSAMSVQSPLVMHPIYAYGSEEQRQKYLPRLAKGELLG 175

Query: 171 CWALTEPAYGSDASALNTTA--TKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQIN 228
           C+ LTEP  GSD S++ T A        + L G K WI NS  AD+ V++AR     +I 
Sbjct: 176 CFGLTEPNSGSDPSSMETRARYNSSNKSYTLNGTKTWITNSPMADLFVVWAR-CEDGRIR 234

Query: 229 GYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSF 277
           G+L++K   GL+  +I+ K  LR    G I++  V VP+E+ LPG +S 
Sbjct: 235 GFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENMLPGASSL 283

Catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and CO(2) in the degradative pathway of L-lysine, L-hydroxylysine, and L-tryptophan metabolism. It uses electron transfer flavoprotein as its electron acceptor.

Macaca fascicularis (taxid: 9541)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: 7

>sp|Q92947|GCDH_HUMAN Glutaryl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=GCDH PE=1 SV=1

 Score =  145 bits (367), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 86/229 (37%), Positives = 124/229 (54%), Gaps = 3/229 (1%)

Query: 51  FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGC 110
            ++ LT++E  +R   R   ++ + P +        F   +I ++G L V G TIKGYGC
Sbjct: 56  LEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIKGYGC 115

Query: 111 PGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
            G S     +   E+ RVD+   + + V SSL M  I   GSEEQ+QKYLP LA+   + 
Sbjct: 116 AGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLG 175

Query: 171 CWALTEPAYGSDASALNTTA--TKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQIN 228
           C+ LTEP  GSD S++ T A        + L G K WI NS  AD+ V++AR      I 
Sbjct: 176 CFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWAR-CEDGCIR 234

Query: 229 GYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSF 277
           G+L++K   GL+  +I+ K  LR    G I++  V VP+E+ LPG +S 
Sbjct: 235 GFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSL 283

Catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and CO(2) in the degradative pathway of L-lysine, L-hydroxylysine, and L-tryptophan metabolism. It uses electron transfer flavoprotein as its electron acceptor. Isoform Short is inactive.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: 7

>sp|P81140|GCDH_PIG Glutaryl-CoA dehydrogenase, mitochondrial (Fragment) OS=Sus scrofa GN=GCDH PE=1 SV=1

 Score =  142 bits (357), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 87/230 (37%), Positives = 124/230 (53%), Gaps = 4/230 (1%)

Query: 51  FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGC 110
            ++ LT++E  +R   R   ++ + P +        F   +I ++G L V G TIKGYGC
Sbjct: 25  LEEQLTADEILIRDTFRTYCQEHLMPRIVLANRNEVFHREIISEMGELGVLGPTIKGYGC 84

Query: 111 PGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEE-QKQKYLPSLAQLNTI 169
            G S     +   E+ RVD+   + + V SSL M  I   GSEE Q+QKYLP LA+   +
Sbjct: 85  AGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQQQQKYLPRLAKGELL 144

Query: 170 ACWALTEPAYGSDASALNTTATK--VEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQI 227
            C+ LTEP +GSD  ++ T A        + L G K WI NS  AD+ V++AR    N I
Sbjct: 145 GCFGLTEPNHGSDPGSMETRALHNPSNRSYTLNGAKTWITNSPVADLFVVWAR-CEDNCI 203

Query: 228 NGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSF 277
            G+L++K   GL+  KIE K  LR    G I++  V VP+E+ LP  +S 
Sbjct: 204 RGFLLEKGMRGLSAPKIEGKFSLRASATGMIIMDDVEVPEENVLPKASSL 253

Catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and CO(2) in the degradative pathway of L-lysine, L-hydroxylysine, and L-tryptophan metabolism. It uses electron transfer flavoprotein as its electron acceptor.

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: 7

>sp|P45857|ACDB_BACSU Acyl-CoA dehydrogenase OS=Bacillus subtilis (strain 168) GN=mmgC PE=2 SV=3

 Score =  141 bits (355), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 85/222 (38%), Positives = 126/222 (56%), Gaps = 6/222 (2%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKA-EFPFHVIPKLGALRVAGGTI-KGYGCPG 112
           +T E+  +R  VR+   KEIAP  AE  EK  EFPF +I K+G   + G  + + YG  G
Sbjct: 3   VTQEQVMMRKMVRDFARKEIAP-AAEIMEKTDEFPFQLIKKMGKHGLMGIPVPEQYGGAG 61

Query: 113 HSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACW 172
             V    +AI EI+R+ A+    + VH+S+    I   G+EEQK KY+P+LA  + +  +
Sbjct: 62  ADVVSYILAIHEISRISAAVGVILSVHTSVGTNPILYFGNEEQKMKYIPNLASGDHLGAF 121

Query: 173 ALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR---NTTTNQING 229
           ALTEP  GSDA +L TTA K  G ++L G K +I N   AD+ + FA    +   + I+ 
Sbjct: 122 ALTEPHSGSDAGSLRTTAIKKNGKYLLNGSKIFITNGGAADIYITFALTAPDQGRHGISA 181

Query: 230 YLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           ++V+K+ PG TV K E K+GL      +++     VP+ + L
Sbjct: 182 FIVEKNTPGFTVGKKERKLGLYGSNTTELIFDNAEVPEANLL 223

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: -

>sp|P52042|ACDS_CLOAB Acyl-CoA dehydrogenase, short-chain specific OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=bcd PE=3 SV=1

 Score =  130 bits (328), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 116/221 (52%), Gaps = 4/221 (1%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
           LT E++ VR  VRE  E E+ PI AE  E   FP   + K+G   + G    K YG  G 
Sbjct: 5   LTREQELVRQMVREFAENEVKPIAAEIDETERFPMENVKKMGQYGMMGIPFSKEYGGAGG 64

Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
            V    IA+ E+++V  +    +  H+SL    I   G+EEQKQKYL  LA+   I  + 
Sbjct: 65  DVLSYIIAVEELSKVCGTTGVILSAHTSLCASLINEHGTEEQKQKYLVPLAKGEKIGAYG 124

Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFA---RNTTTNQINGY 230
           LTEP  G+D+ A  T A      +++ G K +I N   AD  VIFA   R   T  I+ +
Sbjct: 125 LTEPNAGTDSGAQQTVAVLEGDHYVINGSKIFITNGGVADTFVIFAMTDRTKGTKGISAF 184

Query: 231 LVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           +++K   G ++ K+E K+G+R     +++ + + VP E+ +
Sbjct: 185 IIEKGFKGFSIGKVEQKLGIRASSTTELVFEDMIVPVENMI 225

Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) (taxid: 272562)

EC: 1

EC: .

EC: 3

EC: .

EC: 8

EC: .

EC: 1

>sp|Q54R47|GCDH_DICDI Glutaryl-CoA dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=gcdh PE=3 SV=1

 Score =  129 bits (325), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 81/249 (32%), Positives = 125/249 (50%), Gaps = 6/249 (2%)

Query: 31  AFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFH 90
           +F    P  KF    +D    + LLT EE  +R +V +  + E+ P +   +   +F   
Sbjct: 27  SFGTIVPGDKFE--WNDPLSLESLLTEEEVMIRDQVNKFCQDELMPRIQMAYRDEKFDRE 84

Query: 91  VIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALC 150
           ++ + G + + G TI  YG   H   G  +    + +VD+   + + V SSL M  I   
Sbjct: 85  IMREYGKMGMLGATIPAYGGVSHVAYG--LMANAVEKVDSGYRSAMSVQSSLVMHPINTF 142

Query: 151 GSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGG-WILEGQKRWIGNS 209
           G++ QK KYL  LA  + + C+ LTEP  GSD + + T A K   G ++L G K WI NS
Sbjct: 143 GTDAQKSKYLDGLASGDLVGCFGLTEPNAGSDPAGMQTRAVKNSAGNYVLNGTKTWITNS 202

Query: 210 TFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDED 269
             ADV V++A+      I G++++K   GL+  KIE K+ LR    G I+++ V VP   
Sbjct: 203 PIADVFVVWAK-VENGDIRGFVLEKGMKGLSAPKIEGKLSLRASITGMIVMEDVEVPPTA 261

Query: 270 RLPGVNSFQ 278
             P V   +
Sbjct: 262 MFPEVKGLR 270

Dictyostelium discoideum (taxid: 44689)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	325
359481157	439	PREDICTED: acyl-coenzyme A oxidase 4, pe	0.870	0.644	0.855	1e-143
255582668	440	acyl-CoA dehydrogenase, putative [Ricinu	0.870	0.643	0.841	1e-143
224139128	437	predicted protein [Populus trichocarpa]	0.852	0.633	0.855	1e-143
402715756	437	acyl-CoA oxidase 4 [Prunus persica]	0.849	0.631	0.862	1e-143
359481155	446	PREDICTED: acyl-coenzyme A oxidase 4, pe	0.861	0.627	0.853	1e-142
351722526	400	acyl-CoA oxidase [Glycine max] gi|156972	0.870	0.707	0.830	1e-140
224087764	436	predicted protein [Populus trichocarpa]	0.849	0.633	0.826	1e-137
47118098	440	putative short-chain acyl-CoA oxidase [T	0.858	0.634	0.820	1e-136
356521028	421	PREDICTED: acyl-coenzyme A oxidase 4, pe	0.815	0.629	0.856	1e-135
297819888	436	acyl-CoA oxidase 4 [Arabidopsis lyrata s	0.870	0.649	0.795	1e-134

>gi|359481157|ref|XP_003632582.1| PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal-like isoform 2 [Vitis vinifera]

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 242/283 (85%), Positives = 261/283 (92%)

Query: 1   MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQ 60
           MTI+SS + DD +K  + SYF LP+LD+SVAFPQATPAS FPPCASDYYQFDDLLT EEQ
Sbjct: 1   MTIYSSNNADDSEKAKKGSYFGLPSLDVSVAFPQATPASIFPPCASDYYQFDDLLTPEEQ 60

Query: 61  AVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAI 120
           A+RMKVR+C+EKEIAPIM EYWEKAEFPFHV+PKL ALR+AGGTIKGYGCPG SVT +AI
Sbjct: 61  ALRMKVRKCVEKEIAPIMTEYWEKAEFPFHVVPKLAALRIAGGTIKGYGCPGLSVTASAI 120

Query: 121 AIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYG 180
             AE++RVDASCSTFILVHSSLAMLTIALCGSE QKQKYLPSLAQLNTIACWALTEP YG
Sbjct: 121 TTAEVSRVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLNTIACWALTEPDYG 180

Query: 181 SDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLT 240
           SDAS+L TTATKVEGGWILEGQKRWIGNSTFADVL+IFARNTTTNQINGY+VKK APGLT
Sbjct: 181 SDASSLKTTATKVEGGWILEGQKRWIGNSTFADVLIIFARNTTTNQINGYIVKKGAPGLT 240

Query: 241 VTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKV 283
            TKI+NKIGLRIVQNGDI  KKVFVPDEDRLPGVNSFQDT+KV
Sbjct: 241 ATKIQNKIGLRIVQNGDIQFKKVFVPDEDRLPGVNSFQDTNKV 283

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582668|ref|XP_002532113.1| acyl-CoA dehydrogenase, putative [Ricinus communis] gi|223528216|gb|EEF30275.1| acyl-CoA dehydrogenase, putative [Ricinus communis]

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 239/284 (84%), Positives = 267/284 (94%), Gaps = 1/284 (0%)

Query: 1   MTIH-SSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEE 59
           MTI+ SSK+QDD+D + +SSYFNLP L++S+AFPQATPAS FPPCASDY+Q DDLLT EE
Sbjct: 1   MTIYASSKNQDDLDHSQKSSYFNLPPLNVSIAFPQATPASIFPPCASDYFQLDDLLTPEE 60

Query: 60  QAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAA 119
           QA+R+KVR+CMEKEIAPIM EYWEKA+FPFHVIPKLG LR+AGGTIKGYGCPG S+TG+A
Sbjct: 61  QAIRIKVRQCMEKEIAPIMTEYWEKAKFPFHVIPKLGTLRIAGGTIKGYGCPGLSLTGSA 120

Query: 120 IAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAY 179
           +A AE+ARVDASCSTFILVHSSLAMLTIALCGSE QKQKYLPSLAQL+T+ACWALTEP Y
Sbjct: 121 VATAEVARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLSTVACWALTEPEY 180

Query: 180 GSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGL 239
           GSDASAL TTA KVEGGWIL+GQKRWIGNSTFADVLV+FARNT+T QINGY+VKKDAPGL
Sbjct: 181 GSDASALKTTARKVEGGWILDGQKRWIGNSTFADVLVVFARNTSTEQINGYIVKKDAPGL 240

Query: 240 TVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKV 283
           T TKIENKIGLR+VQNGDILLK+VF+PDEDRLPGVNSFQDT+KV
Sbjct: 241 TATKIENKIGLRMVQNGDILLKQVFIPDEDRLPGVNSFQDTNKV 284

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139128|ref|XP_002322987.1| predicted protein [Populus trichocarpa] gi|222867617|gb|EEF04748.1| predicted protein [Populus trichocarpa]

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 237/277 (85%), Positives = 265/277 (95%)

Query: 7   KHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKV 66
           K+QD+V++NARSSYFNLP LD+SVAFPQATPAS FPP  SDY+Q  DLLT+E+QA+RM+V
Sbjct: 5   KNQDEVEQNARSSYFNLPPLDVSVAFPQATPASTFPPSVSDYFQISDLLTAEDQAIRMRV 64

Query: 67  RECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIA 126
           R+CMEKEIAPIMAEYWEKA+FPFHVIPKLGAL +AGGTIKGYGCPG S+T +A+AIAE+A
Sbjct: 65  RQCMEKEIAPIMAEYWEKAKFPFHVIPKLGALGIAGGTIKGYGCPGLSITTSAVAIAEVA 124

Query: 127 RVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASAL 186
           RVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLA+ +T+ACWALTEP YGSDAS+L
Sbjct: 125 RVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAKFSTVACWALTEPDYGSDASSL 184

Query: 187 NTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIEN 246
            TTATKVEGGWILEGQKRWIGNSTFAD+LVIFARNTTT+QINGY+VKKDAPGLTVTKIEN
Sbjct: 185 QTTATKVEGGWILEGQKRWIGNSTFADLLVIFARNTTTDQINGYIVKKDAPGLTVTKIEN 244

Query: 247 KIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKV 283
           KIGLRIVQNGDI++K+VFVPDEDRLPGVNSFQDT+KV
Sbjct: 245 KIGLRIVQNGDIVMKRVFVPDEDRLPGVNSFQDTNKV 281

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|402715756|gb|AFQ93696.1| acyl-CoA oxidase 4 [Prunus persica]

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 238/276 (86%), Positives = 258/276 (93%)

Query: 8   HQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVR 67
           +QDDV+KN R++YFN PA+D+S+AFPQATPAS FPPC SDYYQFDDLLT EEQAVR++VR
Sbjct: 6   NQDDVNKNERTNYFNSPAMDVSLAFPQATPASTFPPCTSDYYQFDDLLTPEEQAVRLRVR 65

Query: 68  ECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIAR 127
           +C+EK++APIMAEYWEKAEFPFHVIPK GALR+AGGTIKGYGCPG S+T  A A AEIAR
Sbjct: 66  QCLEKDVAPIMAEYWEKAEFPFHVIPKFGALRIAGGTIKGYGCPGLSITANAFATAEIAR 125

Query: 128 VDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALN 187
           VDASCSTF LVHSSLAMLTIALCGSE QKQ+YLPSLA+L T+ACWALTEP YGSDASAL 
Sbjct: 126 VDASCSTFFLVHSSLAMLTIALCGSEAQKQEYLPSLAELKTVACWALTEPDYGSDASALR 185

Query: 188 TTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENK 247
           TTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGY+VKK+ PGLT TKIENK
Sbjct: 186 TTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYIVKKNVPGLTATKIENK 245

Query: 248 IGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKV 283
           IGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKV
Sbjct: 246 IGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKV 281

Source: Prunus persica

Species: Prunus persica

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481155|ref|XP_002264086.2| PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal-like isoform 1 [Vitis vinifera] gi|296083170|emb|CBI22806.3| unnamed protein product [Vitis vinifera]

 Score =  509 bits (1310), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 239/280 (85%), Positives = 258/280 (92%)

Query: 4   HSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVR 63
           +SS + DD +K  + SYF LP+LD+SVAFPQATPAS FPPCASDYYQFDDLLT EEQA+R
Sbjct: 11  YSSNNPDDSEKAKKGSYFGLPSLDVSVAFPQATPASIFPPCASDYYQFDDLLTPEEQALR 70

Query: 64  MKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIA 123
           MKVR+C+EKEIAPIM EYWEKAEFPFHV+PKL ALR+AGGTIKGYGCPG SVT +AI  A
Sbjct: 71  MKVRKCVEKEIAPIMTEYWEKAEFPFHVVPKLAALRIAGGTIKGYGCPGLSVTASAITTA 130

Query: 124 EIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDA 183
           E++RVDASCSTFILVHSSLAMLTIALCGSE QKQKYLPSLAQLNTIACWALTEP YGSDA
Sbjct: 131 EVSRVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLNTIACWALTEPDYGSDA 190

Query: 184 SALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTK 243
           S+L TTATKVEGGWILEGQKRWIGNSTFADVL+IFARNTTTNQINGY+VKK APGLT TK
Sbjct: 191 SSLKTTATKVEGGWILEGQKRWIGNSTFADVLIIFARNTTTNQINGYIVKKGAPGLTATK 250

Query: 244 IENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKV 283
           I+NKIGLRIVQNGDI  KKVFVPDEDRLPGVNSFQDT+KV
Sbjct: 251 IQNKIGLRIVQNGDIQFKKVFVPDEDRLPGVNSFQDTNKV 290

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722526|ref|NP_001236991.1| acyl-CoA oxidase [Glycine max] gi|156972244|gb|ABU98950.1| acyl-CoA oxidase [Glycine max]

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 235/283 (83%), Positives = 260/283 (91%)

Query: 1   MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQ 60
           M I+SSK+ D   +NA  SYF  P LD+S AFPQATPAS FPPCASDY+Q D+LLT+EEQ
Sbjct: 1   MAINSSKNPDGSVQNAMPSYFYSPPLDVSAAFPQATPASTFPPCASDYFQLDNLLTAEEQ 60

Query: 61  AVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAI 120
           A+R KVRECMEKEIAPIM EYWEKA+FPFHVIPKLGALR+AGGTIK YGCPG S+TG+AI
Sbjct: 61  AIRKKVRECMEKEIAPIMTEYWEKAKFPFHVIPKLGALRIAGGTIKDYGCPGLSITGSAI 120

Query: 121 AIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYG 180
           A+AE+ARVDASCSTFILVHSSLAMLTIALCGSE QKQKYLPSLAQL T+ACWALTEP YG
Sbjct: 121 AVAEVARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLQTVACWALTEPDYG 180

Query: 181 SDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLT 240
           SDASAL TTATKVEGGWILEGQKRWIGNSTFADVLV+FARN +TNQING+++KKDAPGLT
Sbjct: 181 SDASALKTTATKVEGGWILEGQKRWIGNSTFADVLVVFARNASTNQINGFIIKKDAPGLT 240

Query: 241 VTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKV 283
           VTKIENKIGLRIVQNGDI+++KVFVPDEDR+ GVNSFQDT+KV
Sbjct: 241 VTKIENKIGLRIVQNGDIVMRKVFVPDEDRIAGVNSFQDTNKV 283

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087764|ref|XP_002308225.1| predicted protein [Populus trichocarpa] gi|222854201|gb|EEE91748.1| predicted protein [Populus trichocarpa]

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 229/277 (82%), Positives = 256/277 (92%), Gaps = 1/277 (0%)

Query: 7   KHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKV 66
           K++D+V++N RSSYFNLP LD+SVAFPQATP S FPP  SDYYQF DLLT E+QA+RM+V
Sbjct: 5   KNKDEVEQNPRSSYFNLPPLDVSVAFPQATPVSTFPPSVSDYYQFSDLLTVEDQALRMRV 64

Query: 67  RECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIA 126
           RECMEKEIAP+M EYWEKA+FPFH IPKLGAL +AGGTIKGYGCPG S+T +AIA+AE+A
Sbjct: 65  RECMEKEIAPMMTEYWEKAKFPFHAIPKLGALGIAGGTIKGYGCPGLSITASAIAMAEVA 124

Query: 127 RVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASAL 186
           RVDASCSTFILVHS LAMLTIA CGSEEQK KYLPSLAQ +T+ACWALTEP YGSDAS L
Sbjct: 125 RVDASCSTFILVHS-LAMLTIAFCGSEEQKLKYLPSLAQFSTVACWALTEPDYGSDASGL 183

Query: 187 NTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIEN 246
            TTA KVEGGWILEG+KRWIGNSTFAD+LV+FARNTTTNQING++VKKDAPGLTVTKIEN
Sbjct: 184 KTTAIKVEGGWILEGKKRWIGNSTFADLLVVFARNTTTNQINGFIVKKDAPGLTVTKIEN 243

Query: 247 KIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKV 283
           KIGLRIVQNGDI++K+VFVPDEDRLPGVNSFQDT+KV
Sbjct: 244 KIGLRIVQNGDIVMKRVFVPDEDRLPGVNSFQDTNKV 280

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|47118098|gb|AAT11172.1| putative short-chain acyl-CoA oxidase [Tropaeolum majus]

 Score =  489 bits (1259), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 229/279 (82%), Positives = 249/279 (89%)

Query: 5   SSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRM 64
           SS  QD+ D   RSSYFNLPALDI  AFPQATPASK PP  SDYY+FDDLLT EEQA+R+
Sbjct: 6   SSTKQDNSDNKDRSSYFNLPALDIYAAFPQATPASKLPPTVSDYYKFDDLLTPEEQALRI 65

Query: 65  KVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAE 124
           KVRECMEKE+APIM EYWEKAEFPFH++PKLGALR+AGGTIKGYGCPG S+TG+AIA AE
Sbjct: 66  KVRECMEKEVAPIMTEYWEKAEFPFHIVPKLGALRIAGGTIKGYGCPGLSITGSAIATAE 125

Query: 125 IARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDAS 184
           +ARVDASCSTFILVHSSLAMLTIALCGSE QKQKYLPSLAQL+ +ACWALTEP YGSDAS
Sbjct: 126 VARVDASCSTFILVHSSLAMLTIALCGSESQKQKYLPSLAQLSDVACWALTEPDYGSDAS 185

Query: 185 ALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKI 244
            L T ATKVEGGW+LEGQKRWIG        +IFARNT+TNQING++VKKDAPGLT TKI
Sbjct: 186 GLRTIATKVEGGWLLEGQKRWIGTVPLQISWIIFARNTSTNQINGFIVKKDAPGLTATKI 245

Query: 245 ENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKV 283
           +NKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDT+KV
Sbjct: 246 QNKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTNKV 284

Source: Tropaeolum majus

Species: Tropaeolum majus

Genus: Tropaeolum

Family: Tropaeolaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521028|ref|XP_003529160.1| PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal-like [Glycine max]

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 227/265 (85%), Positives = 248/265 (93%)

Query: 19  SYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIM 78
           SYFNLPALD+SVAFPQATPAS FPPCASDY+ F+DLL  EEQAVR KVRECMEKEIAPIM
Sbjct: 3   SYFNLPALDVSVAFPQATPASNFPPCASDYFHFNDLLKPEEQAVRNKVRECMEKEIAPIM 62

Query: 79  AEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILV 138
            EYWEKAEFPFHVIPK  ALR+AGGTIKGYGCPG S+TG+A+A AE+ARVDASCSTF LV
Sbjct: 63  TEYWEKAEFPFHVIPKFAALRIAGGTIKGYGCPGLSITGSAVATAEVARVDASCSTFYLV 122

Query: 139 HSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWI 198
           HSSLAMLTIALCGSE QKQKYLPSLAQ+ TIACWALTEP YGSDASAL TTATK++ GWI
Sbjct: 123 HSSLAMLTIALCGSEAQKQKYLPSLAQMKTIACWALTEPDYGSDASALKTTATKLQCGWI 182

Query: 199 LEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDI 258
           L+GQKRWIGNSTFAD+LVIFARNTTTNQINGY+VKKDAPGLTVTK+ENKIGLRIVQNGDI
Sbjct: 183 LDGQKRWIGNSTFADLLVIFARNTTTNQINGYIVKKDAPGLTVTKMENKIGLRIVQNGDI 242

Query: 259 LLKKVFVPDEDRLPGVNSFQDTSKV 283
           +++KVFVPD+DR+ GVNSFQDT+KV
Sbjct: 243 VMRKVFVPDDDRIEGVNSFQDTNKV 267

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819888|ref|XP_002877827.1| acyl-CoA oxidase 4 [Arabidopsis lyrata subsp. lyrata] gi|297323665|gb|EFH54086.1| acyl-CoA oxidase 4 [Arabidopsis lyrata subsp. lyrata]

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 225/283 (79%), Positives = 251/283 (88%)

Query: 1   MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQ 60
           MT+ SS  +   +K  +SSYF+LP +++SVAFPQATPAS FPPC SDYY F+DLLT EEQ
Sbjct: 1   MTVLSSADRASTEKKVKSSYFDLPPMEMSVAFPQATPASTFPPCTSDYYHFNDLLTPEEQ 60

Query: 61  AVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAI 120
           A+R KVRECMEKE+APIM EYWEKAEFPFH+ PKLGA+ VAGG+IKGYGCPG S+T  A+
Sbjct: 61  AIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLSITANAV 120

Query: 121 AIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYG 180
           A AEIARVDASCSTFILVHSSL MLTIALCGSE QK+KYLPSLAQLNT+ACWALTEP  G
Sbjct: 121 ATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNG 180

Query: 181 SDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLT 240
           SDAS L TTATKVEGGW ++GQKRWIGNSTFAD+L+IFARNTTTNQING++VKKDAPGL 
Sbjct: 181 SDASGLGTTATKVEGGWKIKGQKRWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGLK 240

Query: 241 VTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKV 283
            TKI NKIGLR+VQNGDILL+ VFVPDEDRLPGVNSFQDTSKV
Sbjct: 241 ATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGVNSFQDTSKV 283

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	325
TAIR|locus:2074403	436	ACX4 "acyl-CoA oxidase 4" [Ara	0.870	0.649	0.795	1.3e-121
DICTYBASE|DDB_G0274585	430	DDB_G0274585 "putative acyl-Co	0.732	0.553	0.410	3.4e-45
UNIPROTKB|Q47V61	394	gcdH "Glutaryl-CoA dehydrogena	0.695	0.573	0.402	1.6e-38
TIGR_CMR|CPS_4667	394	CPS_4667 "glutaryl-CoA dehydro	0.695	0.573	0.402	1.6e-38
WB|WBGene00010052	409	F54D5.7 [Caenorhabditis elegan	0.713	0.567	0.361	7e-38
UNIPROTKB|Q4KKG4	393	gcdH "Glutaryl-CoA dehydrogena	0.695	0.575	0.372	1.1e-34
RGD|1308829	447	Gcdh "glutaryl-CoA dehydrogena	0.686	0.498	0.385	2.2e-34
FB|FBgn0031824	419	CG9547 [Drosophila melanogaste	0.8	0.620	0.362	2.8e-34
MGI|MGI:104541	438	Gcdh "glutaryl-Coenzyme A dehy	0.741	0.550	0.366	2.8e-34
ZFIN|ZDB-GENE-041010-117	427	gcdhl "glutaryl-Coenzyme A deh	0.683	0.519	0.385	2.8e-34

TAIR|locus:2074403 ACX4 "acyl-CoA oxidase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1196 (426.1 bits), Expect = 1.3e-121, P = 1.3e-121
 Identities = 225/283 (79%), Positives = 249/283 (87%)

Query:     1 MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQ 60
             M + SS  +   +K  +SSYF+LP +++SVAFPQATPAS FPPC SDYY F+DLLT EEQ
Sbjct:     1 MAVLSSADRASNEKKVKSSYFDLPPMEMSVAFPQATPASTFPPCTSDYYHFNDLLTPEEQ 60

Query:    61 AVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAI 120
             A+R KVRECMEKE+APIM EYWEKAEFPFH+ PKLGA+ VAGG+IKGYGCPG S+T  AI
Sbjct:    61 AIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLSITANAI 120

Query:   121 AIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYG 180
             A AEIARVDASCSTFILVHSSL MLTIALCGSE QK+KYLPSLAQLNT+ACWALTEP  G
Sbjct:   121 ATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNG 180

Query:   181 SDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLT 240
             SDAS L TTATKVEGGW + GQKRWIGNSTFAD+L+IFARNTTTNQING++VKKDAPGL 
Sbjct:   181 SDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGLK 240

Query:   241 VTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKV 283
              TKI NKIGLR+VQNGDILL+ VFVPDEDRLPGVNSFQDTSKV
Sbjct:   241 ATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGVNSFQDTSKV 283

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=ISS

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0003997 "acyl-CoA oxidase activity" evidence=IMP;IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA;IMP;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=IGI

GO:0046459 "short-chain fatty acid metabolic process" evidence=TAS

GO:0005829 "cytosol" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0007033 "vacuole organization" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0044265 "cellular macromolecule catabolic process" evidence=RCA

DICTYBASE|DDB_G0274585 DDB_G0274585 "putative acyl-CoA oxidase" [Dictyostelium discoideum (taxid:44689)]

 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 101/246 (41%), Positives = 147/246 (59%)

Query:    40 KFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPI-MAEYWEKAEFPFHVIPKLGAL 98
             K  P A+D++ FD LLT +E A+R K  +  ++EI  + + EY+E+AEFP  +I +L  L
Sbjct:    21 KAQPSATDFFDFDGLLTEKELAIRKKAEKFAKEEINSLNINEYYERAEFPLPIIERLKGL 80

Query:    99 RVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQK 158
                G  IKGYG P  +     +   EI++  A  +TF  +  ++ ML I   GSE+QKQ 
Sbjct:    81 NWVGANIKGYGSPELTSMELGLIAMEISKSSADIATFYTILLNITMLAIYYSGSEQQKQY 140

Query:   159 YLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGG--WILEGQKRWIGNSTFADVLV 216
             YLP +  L  I  +ALTEP  GSDA+ L  TA ++  G  WIL G+KRWIGN+  AD++V
Sbjct:   141 YLPKMTSLEKIGAFALTEPEAGSDAAGLKCTAKQLPNGAGWILNGEKRWIGNAPMADIIV 200

Query:   217 IFARNTTTNQINGYLVK--KDAPG---LTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
             I+ARN  TN+I+G++++  K A G   L +  ++ K   R VQNG I +K  F+ ++ RL
Sbjct:   201 IWARNIDTNKIHGFILEPSKVASGGDQLRIETLQKKFAFRSVQNGHIFMKDCFIAEDQRL 260

Query:   272 PGVNSF 277
                  F
Sbjct:   261 TNALDF 266

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=ISS

GO:0005777 "peroxisome" evidence=ISS

GO:0003997 "acyl-CoA oxidase activity" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|Q47V61 gcdH "Glutaryl-CoA dehydrogenase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 93/231 (40%), Positives = 134/231 (58%)

Query:    47 DYYQFDDLLTSEEQAVRMKVRECMEKEIAP--IMAEYWEKAEFPFHVIPKLGALRVAGGT 104
             D    +D L+ +E+ VR       ++E+ P  +MA   E  +F  +++ + G L + G T
Sbjct:    11 DILLLNDQLSEDERMVRDMAHTFCQEELMPGVLMANRNE--DFDPNIMRQFGELGLLGAT 68

Query:   105 IKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLA 164
             I GYGC G +     +   E+ RVD+   + + V SSL M  I   G+ EQK+KYLP LA
Sbjct:    69 IDGYGCSGVNYVSYGLVAREVERVDSGYRSAMSVQSSLVMHPINAYGTTEQKEKYLPKLA 128

Query:   165 QLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTT 224
                 I C+ LTEP  GSD S++ T A KV+GG+ L G K WI NS  ADV V++A+N   
Sbjct:   129 TGEYIGCFGLTEPGSGSDPSSMITRAKKVDGGYRLTGSKMWITNSPIADVFVVWAKNEAE 188

Query:   225 -NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV 274
              NQI G++++K   GL+  KIE KI LR    G+I++  VFVP+E+  P +
Sbjct:   189 GNQICGFVLEKGMAGLSAPKIEGKISLRTSITGEIVMDNVFVPEENMFPEI 239

GO:0004361 "glutaryl-CoA dehydrogenase activity" evidence=ISS

GO:0006520 "cellular amino acid metabolic process" evidence=ISS

TIGR_CMR|CPS_4667 CPS_4667 "glutaryl-CoA dehydrogenase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 93/231 (40%), Positives = 134/231 (58%)

Query:    47 DYYQFDDLLTSEEQAVRMKVRECMEKEIAP--IMAEYWEKAEFPFHVIPKLGALRVAGGT 104
             D    +D L+ +E+ VR       ++E+ P  +MA   E  +F  +++ + G L + G T
Sbjct:    11 DILLLNDQLSEDERMVRDMAHTFCQEELMPGVLMANRNE--DFDPNIMRQFGELGLLGAT 68

Query:   105 IKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLA 164
             I GYGC G +     +   E+ RVD+   + + V SSL M  I   G+ EQK+KYLP LA
Sbjct:    69 IDGYGCSGVNYVSYGLVAREVERVDSGYRSAMSVQSSLVMHPINAYGTTEQKEKYLPKLA 128

Query:   165 QLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTT 224
                 I C+ LTEP  GSD S++ T A KV+GG+ L G K WI NS  ADV V++A+N   
Sbjct:   129 TGEYIGCFGLTEPGSGSDPSSMITRAKKVDGGYRLTGSKMWITNSPIADVFVVWAKNEAE 188

Query:   225 -NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV 274
              NQI G++++K   GL+  KIE KI LR    G+I++  VFVP+E+  P +
Sbjct:   189 GNQICGFVLEKGMAGLSAPKIEGKISLRTSITGEIVMDNVFVPEENMFPEI 239

GO:0004361 "glutaryl-CoA dehydrogenase activity" evidence=ISS

GO:0006520 "cellular amino acid metabolic process" evidence=ISS

WB|WBGene00010052 F54D5.7 [Caenorhabditis elegans (taxid:6239)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 85/235 (36%), Positives = 134/235 (57%)

Query:    47 DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIK 106
             D +Q  D LT +E+++ +  RE  ++ + P + E +   +F   +IP++G++ + G   +
Sbjct:    24 DAFQLSDQLTEDERSLMLSAREYCQERLLPRVTEAYRTEKFDPSLIPEMGSMGLLGAPYQ 83

Query:   107 GYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQL 166
             GYGC G S  G  +   E+ RVD+   + + V +SL +  I   GSE+QKQKY+P LA  
Sbjct:    84 GYGCAGTSTVGYGLIAREVERVDSGYRSTMSVQTSLVIGPIYNYGSEDQKQKYIPDLASG 143

Query:   167 NTIACWALTEPAYGSDASALNTTAT--KVEGGWILEGQKRWIGNSTFADVLVIFARNTT- 223
               I C+ LTEP +GS+   + T AT  +    + L G K WI NS  +DV+V++AR+   
Sbjct:   144 KKIGCFGLTEPNHGSNPGGMETKATWDETTKTYKLNGSKTWISNSPVSDVMVVWARSARH 203

Query:   224 TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQ 278
              N+I G+++++   GLT  KIE K+ LR    G I +  V VP+E+ LP     Q
Sbjct:   204 NNKIKGFILERGMKGLTTPKIEGKLSLRASITGQIAMDDVPVPEENLLPNAEGLQ 258

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|Q4KKG4 gcdH "Glutaryl-CoA dehydrogenase" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 85/228 (37%), Positives = 128/228 (56%)

Query:    52 DDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGC 110
             D  LT EE+ VR    +  + ++AP + E +   +    +  ++G + + G TI + YG 
Sbjct:    16 DQQLTEEERMVRDSAEQFAQDKLAPRVLEAFRHEKTDPAIFREMGEVGLLGATIPEQYGG 75

Query:   111 PGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
              G +     +   E+ RVD+   + + V SSL M+ I   G+E QKQKYLP LA    I 
Sbjct:    76 SGLNYVCYGLIAREVERVDSGYRSMMSVQSSLVMVPINEFGTEAQKQKYLPKLASGEWIG 135

Query:   171 CWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGY 230
             C+ LTEP +GSD  A+ T A KV+GG+ L G K WI NS  ADV V++A++     I G+
Sbjct:   136 CFGLTEPNHGSDPGAMITRARKVDGGYSLTGSKMWITNSPIADVFVVWAKDDA-GDIRGF 194

Query:   231 LVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQ 278
             +++K   GL+   I  K+GLR    G+I++  VFVP+E+  P V   +
Sbjct:   195 VLEKGWKGLSAPAIHGKVGLRASITGEIVMDNVFVPEENIFPDVRGLK 242

GO:0004361 "glutaryl-CoA dehydrogenase activity" evidence=ISS

GO:0009063 "cellular amino acid catabolic process" evidence=ISS

RGD|1308829 Gcdh "glutaryl-CoA dehydrogenase" [Rattus norvegicus (taxid:10116)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 88/228 (38%), Positives = 129/228 (56%)

Query:    52 DDLLTSEEQAVRMKVRE-CMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGC 110
             ++ LT++E+ +R   R  C E+ ++ I+     +  F   ++ ++G L V G TIKGYGC
Sbjct:    66 EEQLTADEKLIRDTFRNYCQERLMSRILLANRNEV-FHRDIVYEMGELGVLGPTIKGYGC 124

Query:   111 PGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
              G S     +   E+ RVD+   + + V SSL M  I   GSEEQ+QKYLP LA+   + 
Sbjct:   125 AGVSSVAYGLLTRELERVDSGYRSMMSVQSSLVMHPIYTYGSEEQRQKYLPRLAKGELLG 184

Query:   171 CWALTEPAYGSDASALNTTA--TKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQIN 228
             C+ LTEP +GSD  ++ T A        + L G K WI NS  AD+ V++AR    N I 
Sbjct:   185 CFGLTEPNHGSDPGSMETRARHNPSNKSYTLSGTKTWITNSPVADLFVVWAR-CEDNCIR 243

Query:   229 GYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNS 276
             G+L++K   GL+  +IE K  LR    G I++  V VP+E+ LP V+S
Sbjct:   244 GFLLEKGMRGLSAPRIEGKFSLRASATGMIIMDSVEVPEENVLPNVSS 291

GO:0000062 "fatty-acyl-CoA binding" evidence=IDA

GO:0004361 "glutaryl-CoA dehydrogenase activity" evidence=ISO;IDA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0006637 "acyl-CoA metabolic process" evidence=IDA

GO:0019395 "fatty acid oxidation" evidence=IDA

GO:0046949 "fatty-acyl-CoA biosynthetic process" evidence=IDA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IDA

FB|FBgn0031824 CG9547 [Drosophila melanogaster (taxid:7227)]

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 99/273 (36%), Positives = 143/273 (52%)

Query:    47 DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIK 106
             D    +  LT EE A+R   R   + E+ P +        F   ++ ++G+L V G TIK
Sbjct:    33 DPLNLESQLTEEEVAIRDAFRGYCQAELQPRVKMANRLETFDKKIMEEIGSLGVLGCTIK 92

Query:   107 GYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQL 166
             GYGC G S     +   E+ RVD++  + + V SSLAM  I   GSEEQKQ+YLPS+A+ 
Sbjct:    93 GYGCAGVSSVAYGLLTREVERVDSAYRSAVSVQSSLAMGAIYDFGSEEQKQRYLPSMAEG 152

Query:   167 NTIACWALTEPAYGSDASALNTTAT--KVEGGWILEGQKRWIGNSTFADVLVIFARNTTT 224
               I  + LTEP +GSD + + T A        +IL G K WI ++  ADV+V++A+    
Sbjct:   153 KLIGAFGLTEPNHGSDPAGMETRAKYDSKSKTYILNGSKTWITSAPIADVIVVWAK-CED 211

Query:   225 NQINGYLV--KKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDT-S 281
              ++ G+LV  K    GL   KIE K  LR    G IL+ +V VP+E  LP V  F    S
Sbjct:   212 GKVRGFLVDRKISGKGLETPKIEGKFSLRASPTGMILMDEVRVPEEQLLPNVAGFSGPFS 271

Query:   282 KVSEGEETV-WSTISSFSDQPAETCSD-AGKYS 312
              ++     + W  + +     AETC + A +Y+
Sbjct:   272 CLNNARYGIAWGALGA-----AETCVEIARQYT 299

GO:0004361 "glutaryl-CoA dehydrogenase activity" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0006568 "tryptophan metabolic process" evidence=ISS

GO:0006554 "lysine catabolic process" evidence=ISS

GO:0046948 "hydroxylysine catabolic process" evidence=ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IDA

MGI|MGI:104541 Gcdh "glutaryl-Coenzyme A dehydrogenase" [Mus musculus (taxid:10090)]

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 91/248 (36%), Positives = 133/248 (53%)

Query:    34 QATPASKFPPCAS--DYYQFDDLLTSEEQAVRMKVRE-CMEKEIAPIMAEYWEKAEFPFH 90
             Q  PA    P     D    ++ LT++E+ +R   R  C E+ ++ I+     +  F   
Sbjct:    37 QIRPAKSSRPVFDWKDPLILEEQLTADEKLIRDTFRNYCQERLMSRILLANRNEV-FHRD 95

Query:    91 VIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALC 150
             ++ ++G L V G TIKGYGC G S     +   E+ RVD+   + + V SSL M  I   
Sbjct:    96 IVYEMGELGVLGPTIKGYGCAGVSSVAYGLLTRELERVDSGYRSMMSVQSSLVMHPIYTY 155

Query:   151 GSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTA--TKVEGGWILEGQKRWIGN 208
             GSEEQ+QKYLP LA+   + C+ LTEP +GSD   + T A        + L G K WI N
Sbjct:   156 GSEEQRQKYLPGLAKGELLGCFGLTEPNHGSDPGGMETRARHNPSNQSYTLSGTKTWITN 215

Query:   209 STFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDE 268
             S  AD+ +++AR    N I G++++K   GL+  +IE K  LR    G I++  V VP+E
Sbjct:   216 SPVADLFIVWAR-CEDNCIRGFILEKGMRGLSAPRIEGKFSLRASATGMIIMDSVEVPEE 274

Query:   269 DRLPGVNS 276
             + LP V+S
Sbjct:   275 NVLPNVSS 282

GO:0000062 "fatty-acyl-CoA binding" evidence=ISO

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

GO:0004361 "glutaryl-CoA dehydrogenase activity" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0006637 "acyl-CoA metabolic process" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

GO:0019395 "fatty acid oxidation" evidence=ISO

GO:0046949 "fatty-acyl-CoA biosynthetic process" evidence=ISO

GO:0050660 "flavin adenine dinucleotide binding" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=IEA

ZFIN|ZDB-GENE-041010-117 gcdhl "glutaryl-Coenzyme A dehydrogenase, like" [Danio rerio (taxid:7955)]

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 89/231 (38%), Positives = 127/231 (54%)

Query:    47 DYYQFDDLLTSEEQAVRMKVRE-CMEKEIAPIMAEYWEKAEFPFH--VIPKLGALRVAGG 103
             D    + LLT EE  +R   R  C EK +  I+     + E  FH  ++ ++G L V G 
Sbjct:    54 DALDLEGLLTEEEIMIRDSFRTYCQEKLMPRILMA--NRNEI-FHREIVSEMGELGVLGP 110

Query:   104 TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSL 163
             TIKGYGC G S     +   E+ RVD+   + + V SSL M  I   G+EEQKQKYLP L
Sbjct:   111 TIKGYGCAGTSYVAYGLIAREVERVDSGYRSVMSVQSSLVMHPINAYGTEEQKQKYLPRL 170

Query:   164 AQLNTIACWALTEPAYGSDASALNTTATKVEGG--WILEGQKRWIGNSTFADVLVIFARN 221
             AQ   + C+ LTEP +GSD  ++ T A        + L G K WI NS  AD+ V++A+ 
Sbjct:   171 AQGEILGCFGLTEPNHGSDPGSMETKAKYNSSSHTFTLTGSKTWITNSPVADICVVWAK- 229

Query:   222 TTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLP 272
                 ++ G+++++   GL+  KIE K  LR    G I++ +V VP+E+ LP
Sbjct:   230 CEDGKVRGFILERGMKGLSTPKIEGKFSLRASATGMIIMDEVEVPEENLLP 280

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q96329	ACOX4_ARATH	1, ., 3, ., 3, ., 6	0.7950	0.8707	0.6490	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_XVI3692	acyl-CoA oxidase (EC-1.3.3.6) (437 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pg.C_LG_II1951	acetyl-CoA C-acyltransferase (EC-2.3.1.16) (457 aa)	•					•	•		0.925
	fgenesh4_pm.C_LG_I000162	SubName- Full=Putative uncharacterized protein; (460 aa)	•					•	•		0.925
	estExt_Genewise1_v1.C_LG_XIV3807	acetyl-CoA C-acetyltransferase (EC-2.3.1.9) (402 aa)	•					•	•		0.918
	grail3.0024004101	acetyl-CoA C-acetyltransferase (EC-2.3.1.9) (412 aa)	•					•	•		0.917
	estExt_Genewise1_v1.C_LG_X3923	hypothetical protein (726 aa)						•	•		0.908
	estExt_fgenesh4_pg.C_LG_XVIII0682	SubName- Full=Putative uncharacterized protein; (727 aa)						•	•		0.907
	estExt_fgenesh4_pg.C_LG_VIII0916	enoyl-CoA hydratase (EC-4.2.1.17) (265 aa)						•			0.903
	grail3.0006050201	enoyl-CoA hydratase (EC-4.2.1.17) (265 aa)						•			0.903
	gw1.X.5990.1	long-chain acyl-CoA synthetase (EC-6.2.1.3) (705 aa)						•			0.899
	gw1.II.706.1	long-chain-fatty-acid-CoA ligase (EC-6.2.1.3) (652 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	325
PLN02526	412	PLN02526, PLN02526, acyl-coenzyme A oxidase	0.0
cd01151	386	cd01151, GCD, Glutaryl-CoA dehydrogenase	1e-124
cd01158	373	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrog	3e-57
COG1960	393	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid meta	8e-52
cd00567	327	cd00567, ACAD, Acyl-CoA dehydrogenase	3e-40
cd01156	376	cd01156, IVD, Isovaleryl-CoA dehydrogenase	2e-37
pfam02771	113	pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase,	4e-34
cd01162	375	cd01162, IBD, Isobutyryl-CoA dehydrogenase	3e-32
cd01160	372	cd01160, LCAD, Long chain acyl-CoA dehydrogenase	7e-31
cd01161	409	cd01161, VLCAD, Very long chain acyl-CoA dehydroge	4e-30
cd01157	378	cd01157, MCAD, Medium chain acyl-CoA dehydrogenase	2e-25
PLN02519	404	PLN02519, PLN02519, isovaleryl-CoA dehydrogenase	5e-24
PTZ00461	410	PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase;	3e-22
cd01152	380	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehyd	2e-19
pfam02770	52	pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase,	7e-17
PRK12341	381	PRK12341, PRK12341, putative acyl-CoA dehydrogenas	8e-17
TIGR03207	372	TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-Co	7e-15
cd01153	407	cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogena	5e-14
cd01150	610	cd01150, AXO, Peroxisomal acyl-CoA oxidase	9e-14
PRK03354	380	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogen	1e-12
TIGR03204	395	TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase,	1e-12
PRK13026	774	PRK13026, PRK13026, acyl-CoA dehydrogenase; Review	3e-09
PRK09463	777	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	4e-09
PLN02443	664	PLN02443, PLN02443, acyl-coenzyme A oxidase	3e-08
cd01163	377	cd01163, DszC, Dibenzothiophene (DBT) desulfurizat	5e-08
cd01155	394	cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases simil	1e-07
PLN02636	686	PLN02636, PLN02636, acyl-coenzyme A oxidase	1e-07
TIGR03203	378	TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase,	2e-07
PTZ00456	622	PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provis	1e-06
PTZ00460	646	PTZ00460, PTZ00460, acyl-CoA dehydrogenase; Provis	2e-06
TIGR04022	391	TIGR04022, sulfur_SfnB, sulfur acquisition oxidore	2e-06
PTZ00457	520	PTZ00457, PTZ00457, acyl-CoA dehydrogenase; Provis	6e-06
cd01154	418	cd01154, AidB, Proteins involved in DNA damage res	3e-05
PLN02312	680	PLN02312, PLN02312, acyl-CoA oxidase	9e-05

>gnl|CDD|178141 PLN02526, PLN02526, acyl-coenzyme A oxidase

 Score =  546 bits (1408), Expect = 0.0
 Identities = 222/257 (86%), Positives = 240/257 (93%)

Query: 27  DISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAE 86
           D+SVAFPQATPAS FPP  SDYYQFDDLLT EEQA+R +VRECMEKE+APIM EYWEKAE
Sbjct: 1   DVSVAFPQATPASIFPPSVSDYYQFDDLLTPEEQALRKRVRECMEKEVAPIMTEYWEKAE 60

Query: 87  FPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLT 146
           FPFH+IPKLG+L +AGGTIKGYGCPG S+T +AIA AE+ARVDASCSTFILVHSSLAMLT
Sbjct: 61  FPFHIIPKLGSLGIAGGTIKGYGCPGLSITASAIATAEVARVDASCSTFILVHSSLAMLT 120

Query: 147 IALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWI 206
           IALCGSE QKQKYLPSLAQL+T+ACWALTEP YGSDAS+LNTTATKVEGGWIL GQKRWI
Sbjct: 121 IALCGSEAQKQKYLPSLAQLDTVACWALTEPDYGSDASSLNTTATKVEGGWILNGQKRWI 180

Query: 207 GNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVP 266
           GNSTFADVLVIFARNTTTNQING++VKK APGL  TKIENKIGLR+VQNGDI+LK VFVP
Sbjct: 181 GNSTFADVLVIFARNTTTNQINGFIVKKGAPGLKATKIENKIGLRMVQNGDIVLKDVFVP 240

Query: 267 DEDRLPGVNSFQDTSKV 283
           DEDRLPGVNSFQDT+KV
Sbjct: 241 DEDRLPGVNSFQDTNKV 257

Length = 412

>gnl|CDD|173840 cd01151, GCD, Glutaryl-CoA dehydrogenase

 Score =  361 bits (929), Expect = e-124
 Identities = 104/241 (43%), Positives = 142/241 (58%)

Query: 43  PCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAG 102
               D    DDLLT EE+A+R   RE  ++E+AP + E + + +F   +I ++G L + G
Sbjct: 1   FNWEDPLNLDDLLTEEERAIRDTAREFCQEELAPRVLEAYREEKFDRKIIEEMGELGLLG 60

Query: 103 GTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPS 162
            TIKGYGC G S     +   E+ RVD+   +F+ V SSL ML I   GSEEQKQKYLP 
Sbjct: 61  ATIKGYGCAGLSSVAYGLIAREVERVDSGYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPK 120

Query: 163 LAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT 222
           LA    I C+ LTEP +GSD   + T A K  GG+ L G K WI NS  ADV V++ARN 
Sbjct: 121 LASGELIGCFGLTEPNHGSDPGGMETRARKDGGGYKLNGSKTWITNSPIADVFVVWARND 180

Query: 223 TTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSK 282
            T +I G+++++   GL+  KI+ K  LR    G+I++  VFVP+E+ LPG    +   K
Sbjct: 181 ETGKIRGFILERGMKGLSAPKIQGKFSLRASITGEIVMDNVFVPEENLLPGAEGLRGPFK 240

Query: 283 V 283
            
Sbjct: 241 C 241

Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans. Length = 386

>gnl|CDD|173847 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases

 Score =  188 bits (480), Expect = 3e-57
 Identities = 94/219 (42%), Positives = 129/219 (58%), Gaps = 4/219 (1%)

Query: 57  SEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSV 115
            E Q +R  VR+  EKEIAP+ AE  EK EFP  VI ++  L + G  I + YG  G   
Sbjct: 1   EEHQMIRKTVRDFAEKEIAPLAAEMDEKGEFPREVIKEMAELGLMGIPIPEEYGGAGLDF 60

Query: 116 TGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALT 175
              AIAI E+A+VDAS +  + VH+SL    I   G+EEQK+KYLP LA    I  +AL+
Sbjct: 61  LAYAIAIEELAKVDASVAVIVSVHNSLGANPIIKFGTEEQKKKYLPPLATGEKIGAFALS 120

Query: 176 EPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQ---INGYLV 232
           EP  GSDA+AL TTA K    ++L G K WI N   AD  ++FA    +     I  ++V
Sbjct: 121 EPGAGSDAAALKTTAKKDGDDYVLNGSKMWITNGGEADFYIVFAVTDPSKGYRGITAFIV 180

Query: 233 KKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           ++D PGL+V K E+K+G+R     +++ + V VP E+ L
Sbjct: 181 ERDTPGLSVGKKEDKLGIRGSSTTELIFEDVRVPKENIL 219

Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers. Length = 373

>gnl|CDD|224871 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]

 Score =  175 bits (445), Expect = 8e-52
 Identities = 90/237 (37%), Positives = 125/237 (52%), Gaps = 13/237 (5%)

Query: 52  DDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKA---EFPFHVIPKLGALRVAGGTI-KG 107
           D  L+ E++A+R +VRE  E+E+AP  AE   +     FP  ++  L    + G TI + 
Sbjct: 2   DFDLSEEQEALRAEVREFAEEELAPEAAEIDRRIEDERFPRELLRALAEAGLLGLTIPEE 61

Query: 108 YGCPGHSVTGAAIAIAEIARVDAS-CSTFILVHSSLAML--TIALCGSEEQKQKYLPSLA 164
           YG  G S    A  + E+AR DA       L H  L  L  TI   G+EEQK++YLP LA
Sbjct: 62  YGGLGLSPLEQAAVLEELARADAGGALALGLTHGGLGALAPTILRFGTEEQKRRYLPRLA 121

Query: 165 QLNTIACWALTEPAYGSDASALNTT-ATKVEGGWILEGQKRWIGNSTFADVLVIFARNT- 222
               I  +ALTEP  GSD ++L TT A + +G ++L GQK WI N+  AD L++ AR   
Sbjct: 122 SGELIGAFALTEPGAGSDLASLRTTAAVRDDGDYVLNGQKIWISNAPVADWLLVLARTDP 181

Query: 223 ---TTNQINGYLV-KKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVN 275
                  I+ +LV K   PG++V  I  K+GLR    G++    V VP E+ L    
Sbjct: 182 APGKHKGISLFLVPKDLTPGVSVGPILKKMGLRGSATGEVFFDDVRVPAENLLGEEG 238

Length = 393

>gnl|CDD|173838 cd00567, ACAD, Acyl-CoA dehydrogenase

 Score =  143 bits (362), Expect = 3e-40
 Identities = 65/222 (29%), Positives = 101/222 (45%), Gaps = 47/222 (21%)

Query: 58  EEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTG 117
           E++ +R   RE   +E+ P   E  E  E P+ ++ +LG L                   
Sbjct: 2   EQRELRDSAREFAAEELEPYARERRETPEEPWELLAELGLL------------------- 42

Query: 118 AAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEP 177
                                   L    +   G+EEQK++YLP LA    IA +ALTEP
Sbjct: 43  ------------------------LGAALLLAYGTEEQKERYLPPLASGEAIAAFALTEP 78

Query: 178 AYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR----NTTTNQINGYLVK 233
             GSD + + TTA K   G++L G+K +I N   AD+ ++ AR          I+ +LV 
Sbjct: 79  GAGSDLAGIRTTARKDGDGYVLNGRKIFISNGGDADLFIVLARTDEEGPGHRGISAFLVP 138

Query: 234 KDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVN 275
            D PG+TV +I +K+G+R    G+++   V VP+++ L    
Sbjct: 139 ADTPGVTVGRIWDKMGMRGSGTGELVFDDVRVPEDNLLGEEG 180

Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isobutyryl-CoA dehydrogenase (IBDH), glutaryl-CoA deydrogenase (GCD) and Crotonobetainyl-CoA dehydrogenase. The mitochondrial ACAD's are generally homotetramers, except for VLCAD, which is a homodimer. Related enzymes include the SOS adaptive reponse proten aidB, Naphthocyclinone hydroxylase (NcnH), and and Dibenzothiophene (DBT) desulfurization enzyme C (DszC). Length = 327

>gnl|CDD|173845 cd01156, IVD, Isovaleryl-CoA dehydrogenase

 Score =  136 bits (345), Expect = 2e-37
 Identities = 75/226 (33%), Positives = 114/226 (50%), Gaps = 4/226 (1%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
           L  E + +R  VRE  +KEIAP+ A+     EFP  +  K+G L + G T  + YG  G 
Sbjct: 2   LDDEIEMLRQSVREFAQKEIAPLAAKIDRDNEFPRDLWRKMGKLGLLGITAPEEYGGSGM 61

Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
                 I + EI+R   S +     HS+L +  I   GS  QK+KYLP L     I   A
Sbjct: 62  GYLAHVIIMEEISRASGSVALSYGAHSNLCINQIYRNGSAAQKEKYLPKLISGEHIGALA 121

Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGY--- 230
           ++EP  GSD  ++   A K    ++L G K WI N   AD LV++A+   +   +G    
Sbjct: 122 MSEPNAGSDVVSMKLRAEKKGDRYVLNGSKMWITNGPDADTLVVYAKTDPSAGAHGITAF 181

Query: 231 LVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNS 276
           +V+K  PG +  +  +K+G+R     +++ +   VP+E+ L G N 
Sbjct: 182 IVEKGMPGFSRAQKLDKLGMRGSNTCELVFEDCEVPEENILGGENK 227

Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates. Length = 376

>gnl|CDD|217220 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-terminal domain

 Score =  120 bits (304), Expect = 4e-34
 Identities = 51/110 (46%), Positives = 66/110 (60%), Gaps = 1/110 (0%)

Query: 56  TSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHS 114
           T E++A+R  VRE  E+E+AP  AE+ E+ EFP  +  KLG L + G TI + YG  G  
Sbjct: 1   TEEQEALRDTVREFAEEEVAPHAAEWDEEGEFPRELWRKLGELGLLGLTIPEEYGGAGLD 60

Query: 115 VTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLA 164
               A+   E+AR DAS    + VHSSL    I   G+EEQK+KYLP LA
Sbjct: 61  YLEYALVAEELARADASVGLALSVHSSLVAPPILRFGTEEQKEKYLPKLA 110

The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain. Length = 113

>gnl|CDD|173851 cd01162, IBD, Isobutyryl-CoA dehydrogenase

 Score =  122 bits (309), Expect = 3e-32
 Identities = 69/220 (31%), Positives = 114/220 (51%), Gaps = 4/220 (1%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKG-YGCPGH 113
           L  E++A++   R    KE+AP  A++ +K  FP  V+ K   L   G  I+   G  G 
Sbjct: 1   LNEEQRAIQEVARAFAAKEMAPHAADWDQKKHFPVDVLRKAAELGFGGIYIRDDVGGSGL 60

Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
           S   A+I    ++    S + +I +H+  A + I   G++EQ++++LP L  +  +A + 
Sbjct: 61  SRLDASIIFEALSTGCVSTAAYISIHNMCAWM-IDSFGNDEQRERFLPDLCTMEKLASYC 119

Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQ--INGYL 231
           LTEP  GSDA+AL T A +    ++L G K +I  +  +DV V+ AR        I+ ++
Sbjct: 120 LTEPGSGSDAAALRTRAVREGDHYVLNGSKAFISGAGDSDVYVVMARTGGEGPKGISCFV 179

Query: 232 VKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           V+K  PGL+    E K+G        ++ +   VP E+RL
Sbjct: 180 VEKGTPGLSFGANEKKMGWNAQPTRAVIFEDCRVPVENRL 219

Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer. Length = 375

>gnl|CDD|173849 cd01160, LCAD, Long chain acyl-CoA dehydrogenase

 Score =  119 bits (300), Expect = 7e-31
 Identities = 73/224 (32%), Positives = 104/224 (46%), Gaps = 8/224 (3%)

Query: 58  EEQAVRMKVRECMEKEIAPIMAEYWEKA-EFPFHVIPKLGALRVAG-GTIKGYGCPGHSV 115
           E  A R  VR    KE+AP   E WEKA E P  V  K G   + G G  + YG  G  +
Sbjct: 2   EHDAFRDVVRRFFAKEVAPFHHE-WEKAGEVPREVWRKAGEQGLLGVGFPEEYGGIGGDL 60

Query: 116 TGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALT 175
             AA+   E+AR   S      +H+ +    I   GS EQK++ LP +     I   A+T
Sbjct: 61  LSAAVLWEELARAGGSGPGL-SLHTDIVSPYITRAGSPEQKERVLPQMVAGKKIGAIAMT 119

Query: 176 EPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARN----TTTNQINGYL 231
           EP  GSD   + TTA K    ++L G K +I N   ADV+++ AR          I+ +L
Sbjct: 120 EPGAGSDLQGIRTTARKDGDHYVLNGSKTFITNGMLADVVIVVARTGGEARGAGGISLFL 179

Query: 232 VKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVN 275
           V++  PG +  +   K+G +     ++      VP E+ L   N
Sbjct: 180 VERGTPGFSRGRKLKKMGWKAQDTAELFFDDCRVPAENLLGEEN 223

LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer. Length = 372

>gnl|CDD|173850 cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase

 Score =  117 bits (296), Expect = 4e-30
 Identities = 72/227 (31%), Positives = 114/227 (50%), Gaps = 13/227 (5%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
            T E   +   V +  E+   P   +  EK   P   + +L  L + G  + + YG  G 
Sbjct: 27  QTEELNMLVGPVEKFFEEVNDPAKNDQLEK--IPRKTLTQLKELGLFGLQVPEEYGGLGL 84

Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
           + T  A  +AEI  +D   S  +  H S+    I L G+E QK+KYLP LA    IA +A
Sbjct: 85  NNTQYAR-LAEIVGMDLGFSVTLGAHQSIGFKGILLFGTEAQKEKYLPKLASGEWIAAFA 143

Query: 174 LTEPAYGSDASALNTTATKVEGG--WILEGQKRWIGNSTFADVLVIFAR-------NTTT 224
           LTEP+ GSDA+++ TTA   E G  ++L G K WI N   AD+  +FA+        +  
Sbjct: 144 LTEPSSGSDAASIRTTAVLSEDGKHYVLNGSKIWITNGGIADIFTVFAKTEVKDATGSVK 203

Query: 225 NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           ++I  ++V++   G+T    E K+G++     ++  + V +P E+ L
Sbjct: 204 DKITAFIVERSFGGVTNGPPEKKMGIKGSNTAEVYFEDVKIPVENVL 250

VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer. Length = 409

>gnl|CDD|173846 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase

 Score =  104 bits (260), Expect = 2e-25
 Identities = 63/226 (27%), Positives = 107/226 (47%), Gaps = 8/226 (3%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
           LT +++  +   R+   +EI P+ AEY +  E+P+ +I +   L +    I +  G  G 
Sbjct: 1   LTEQQKEFQETARKFAREEIIPVAAEYDKSGEYPWPLIKRAWELGLMNTHIPEDCGGLGL 60

Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
                 +   E+A       T I   +SL  + + + G++EQK+KYL  + +   +  + 
Sbjct: 61  GTFDTCLITEELAYGCTGVQTAIEA-NSLGQMPVIISGNDEQKKKYLGRMTEEPLMCAYC 119

Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT------TTNQI 227
           +TEP  GSD + + T A K    +I+ GQK WI N   A+   + AR+        +   
Sbjct: 120 VTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKCPASKAF 179

Query: 228 NGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG 273
            G++V+ D PG+   + E  +G R      I  + V VP E+ L G
Sbjct: 180 TGFIVEADTPGIQPGRKELNMGQRCSDTRGITFEDVRVPKENVLIG 225

MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer. Length = 378

>gnl|CDD|215284 PLN02519, PLN02519, isovaleryl-CoA dehydrogenase

 Score =  101 bits (252), Expect = 5e-24
 Identities = 65/248 (26%), Positives = 114/248 (45%), Gaps = 8/248 (3%)

Query: 35  ATPASKFPPCASDYYQFDDLLTSEEQAVRMK--VRECMEKEIAPIMAEYWEKAEFPFHV- 91
           +   ++    A  +      L  ++  ++ K  V++  ++ IAP  A       FP  V 
Sbjct: 4   SAAKARRRGLARRFSSSSSSLLFDDTQLQFKESVQQFAQENIAPHAAAIDATNSFPKDVN 63

Query: 92  -IPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIAL 149
               +G   + G T  + YG  G       IA+ EI+R   S       HS+L +  +  
Sbjct: 64  LWKLMGDFNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVR 123

Query: 150 CGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS 209
            G+  QK+KYLP L     +   A++EP  GSD  ++   A +V+GG++L G K W  N 
Sbjct: 124 NGTPAQKEKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAERVDGGYVLNGNKMWCTNG 183

Query: 210 TFADVLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVP 266
             A  LV++A+         I  ++++K  PG +  +  +K+G+R     +++ +  FVP
Sbjct: 184 PVAQTLVVYAKTDVAAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVP 243

Query: 267 DEDRLPGV 274
           +E+ L   
Sbjct: 244 EENVLGQE 251

Length = 404

>gnl|CDD|185640 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; Provisional

 Score = 95.8 bits (238), Expect = 3e-22
 Identities = 64/235 (27%), Positives = 100/235 (42%), Gaps = 6/235 (2%)

Query: 41  FPPCASDYYQFDDLL--TSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGAL 98
                S    F DL   T E  A+R  V +   + +     E      F   +  +LG L
Sbjct: 21  AATMTSASRAFMDLYNPTPEHAALRETVAKFSREVVDKHAREDDINMHFNRDLFKQLGDL 80

Query: 99  RVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQ 157
            V G T+ +  G  G     A I   E+++ D       L HS L +       S  Q+ 
Sbjct: 81  GVMGVTVPEADGGAGMDAVAAVIIHHELSKYDPGFCLAYLAHSMLFVNNFYYSASPAQRA 140

Query: 158 KYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV-EGGWILEGQKRWIGNSTFADVLV 216
           ++LP +     +    ++EP  G+D   + TTA K   G ++L G K WI N T ADV +
Sbjct: 141 RWLPKVLTGEHVGAMGMSEPGAGTDVLGMRTTAKKDSNGNYVLNGSKIWITNGTVADVFL 200

Query: 217 IFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           I+A+     +I  ++V++   G T     +K G+R      +  + V VP E+ L
Sbjct: 201 IYAK--VDGKITAFVVERGTKGFTQGPKIDKCGMRASHMCQLFFEDVVVPAENLL 253

Length = 410

>gnl|CDD|173841 cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26

 Score = 87.4 bits (217), Expect = 2e-19
 Identities = 65/230 (28%), Positives = 98/230 (42%), Gaps = 13/230 (5%)

Query: 57  SEEQAVRMKVRECMEKEIAP-IMAEYWEKAEFPFHVIPKLGALRVAGGTI-----KGYGC 110
             E+A R +VR  +   + P +  E             +      A G       K YG 
Sbjct: 1   PSEEAFRAEVRAWLAAHLPPELREESALGYREGREDRRRWQRALAAAGWAAPGWPKEYGG 60

Query: 111 PGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
            G S+    I   E+A   A    F  +   LA  TI   G++EQK+++LP +     I 
Sbjct: 61  RGASLMEQLIFREEMAAAGAPVP-FNQIGIDLAGPTILAYGTDEQKRRFLPPILSGEEIW 119

Query: 171 CWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFAD-VLVIFARNTTTNQING 229
           C   +EP  GSD + L T A +    W++ GQK W   + +AD   ++   +    +  G
Sbjct: 120 CQGFSEPGAGSDLAGLRTRAVRDGDDWVVNGQKIWTSGAHYADWAWLLVRTDPEAPKHRG 179

Query: 230 ---YLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNS 276
               LV  D+PG+TV  I +  G     N ++ L  V VPD +R+  VN 
Sbjct: 180 ISILLVDMDSPGVTVRPIRSING-GEFFN-EVFLDDVRVPDANRVGEVND 227

Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position. Length = 380

>gnl|CDD|145755 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain

 Score = 72.9 bits (180), Expect = 7e-17
 Identities = 24/50 (48%), Positives = 34/50 (68%)

Query: 171 CWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR 220
            +ALTEP  GSD ++L TTA +   GW+L G+K WI N+  AD+ ++ AR
Sbjct: 1   AFALTEPGAGSDLASLETTAERDGDGWVLNGRKWWITNAALADLALVLAR 50

Central domain of Acyl-CoA dehydrogenase has a beta-barrel fold. Length = 52

>gnl|CDD|183454 PRK12341, PRK12341, putative acyl-CoA dehydrogenase; Provisional

 Score = 79.8 bits (197), Expect = 8e-17
 Identities = 50/226 (22%), Positives = 91/226 (40%), Gaps = 17/226 (7%)

Query: 55  LTSEEQAVRMKVRECMEKEIA-PIMAEYWEKAEFPFHVIPKLGALRVAG----GTIKGYG 109
           LT E++ +   +RE + +           E   +P   +    AL   G    G  + +G
Sbjct: 5   LTEEQELLLASIRELITRNFPEEYFRTCDENGTYPREFMR---ALADNGISMLGVPEEFG 61

Query: 110 CPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTI 169
                     + + E+++     +   L+ +   + ++   GS EQ +K   S  +    
Sbjct: 62  GTPADYVTQMLVLEEVSK---CGAPAFLITNGQCIHSMRRFGSAEQLRKTAESTLETGDP 118

Query: 170 A-CWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT----TT 224
           A   ALTEP  GSD ++  TT T+  G   L GQK +I  +     +++ AR+       
Sbjct: 119 AYALALTEPGAGSDNNSATTTYTRKNGKVYLNGQKTFITGAKEYPYMLVLARDPQPKDPK 178

Query: 225 NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDR 270
                + V    PG+ +  +  KIG  ++   ++ L  V V + D 
Sbjct: 179 KAFTLWWVDSSKPGIKINPLH-KIGWHMLSTCEVYLDNVEVEESDL 223

Length = 381

>gnl|CDD|132251 TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-CoA dehydrogenase

 Score = 74.2 bits (182), Expect = 7e-15
 Identities = 61/222 (27%), Positives = 99/222 (44%), Gaps = 7/222 (3%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
           L  + QA+    R    + IAP   E  +       ++  +G +   G  + + +G  G 
Sbjct: 1   LNEDLQALADTARRFARERIAPGFKERDKTRVLDRELMRDMGEMGFIGPELPEEHGGLGM 60

Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
               A +   +IAR D S S ++ + +SL    +A     E  + +L  L     +   A
Sbjct: 61  GCLAAGVIHEQIARADLSMS-YVNLLASLNGQILAQHARPEIAKPWLGQLIAGEALFAIA 119

Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQ----ING 229
           LTEP  GSDA+ L   A +    ++L G+K  I  +  AD  V+FAR  +  +    I+ 
Sbjct: 120 LTEPRGGSDAARLRLRAERDGDDYVLNGEKTSISAADQADAAVVFARTGSEAEGARGISA 179

Query: 230 YLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           +LV  D PG+T  + +   G R +  G I  + V VP +  L
Sbjct: 180 FLVPMDLPGITRNRFDC-HGQRAIGRGSIFFENVRVPADHML 220

Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase. Length = 372

>gnl|CDD|173842 cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to fadE5

 Score = 71.7 bits (176), Expect = 5e-14
 Identities = 48/148 (32%), Positives = 70/148 (47%), Gaps = 17/148 (11%)

Query: 119 AIAIAEI-ARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEP 177
             A+AEI +R DA            A  T+   G+E Q++K++P LA+        LTEP
Sbjct: 69  YSALAEIFSRGDAPLMYASGTQG--AAATLLAHGTEAQREKWIPRLAEGEWTGTMCLTEP 126

Query: 178 AYGSDASALNTTATKVEGG-WILEGQKRWI--GNSTFAD--VLVIFAR----NTTTNQIN 228
             GSD  AL T A     G W + G KR+I  G    ++  V ++ AR          ++
Sbjct: 127 DAGSDLGALRTKAVYQADGSWRINGVKRFISAGEHDMSENIVHLVLARSEGAPPGVKGLS 186

Query: 229 GYLVKK-----DAPGLTVTKIENKIGLR 251
            +LV K     +  G+TV +IE K+GL 
Sbjct: 187 LFLVPKFLDDGERNGVTVARIEEKMGLH 214

Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position. Length = 407

>gnl|CDD|173839 cd01150, AXO, Peroxisomal acyl-CoA oxidase

 Score = 71.6 bits (176), Expect = 9e-14
 Identities = 52/177 (29%), Positives = 79/177 (44%), Gaps = 27/177 (15%)

Query: 127 RVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASAL 186
             D S    + +H  L    I   G++E +  +L     L  I C+A TE  +GS+   L
Sbjct: 93  GYDLSLGAKLGLHLGLFGNAIKNLGTDEHQDYWLQGANNLEIIGCFAQTELGHGSNLQGL 152

Query: 187 NTTAT--KVEGGWI-----LEGQKRWIGN----STFADVLVIFARNTTTNQ---INGYLV 232
            TTAT   +   ++         K W GN    +T A   V+FA+  T  +   ++ ++V
Sbjct: 153 ETTATYDPLTQEFVINTPDFTATKWWPGNLGKTATHA---VVFAQLITPGKNHGLHAFIV 209

Query: 233 K-KDA------PGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSK 282
             +D       PG+TV  I  K+GL  V NG +  + V +P E+ L   N F D S 
Sbjct: 210 PIRDPKTHQPLPGVTVGDIGPKMGLNGVDNGFLQFRNVRIPRENLL---NRFGDVSP 263

Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment. Length = 610

>gnl|CDD|179566 PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated

 Score = 67.5 bits (165), Expect = 1e-12
 Identities = 62/227 (27%), Positives = 98/227 (43%), Gaps = 22/227 (9%)

Query: 55  LTSEEQAVRMKVRECMEKE-IAPIMAEYWEKAEFPFHVIPKLGALRV--------AGGTI 105
           L  E++     +RE M  E      AE    + +P   +  L  + +         GG  
Sbjct: 5   LNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPEEHGGLD 64

Query: 106 KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQ 165
            G+      VT AA+   E+ R+ A   T++L        T    G++EQ  K +     
Sbjct: 65  AGF------VTLAAV-WMELGRLGAP--TYVLYQLPGGFNTFLREGTQEQIDKIMAFRGT 115

Query: 166 LNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTN 225
              +   A+TEP  GSD  +L TT T+  G   L G K +I +S +   +V+ AR+  + 
Sbjct: 116 GKQMWNSAITEPGAGSDVGSLKTTYTRRNGKVYLNGSKCFITSSAYTPYIVVMARDGASP 175

Query: 226 QINGY---LVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDED 269
               Y    V    PG+ VTK+E K+GLR+    +I    V + ++D
Sbjct: 176 DKPVYTEWFVDMSKPGIKVTKLE-KLGLRMDSCCEITFDDVELDEKD 221

Length = 380

>gnl|CDD|132248 TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, large subunit

 Score = 67.7 bits (165), Expect = 1e-12
 Identities = 46/142 (32%), Positives = 70/142 (49%), Gaps = 6/142 (4%)

Query: 151 GSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST 210
           G+EEQK+++LP +A ++   C   +EP  GSD ++L T A K    WI+ GQK W   + 
Sbjct: 104 GNEEQKKRFLPRIANVDDWWCQGFSEPGSGSDLASLKTKAEKKGDKWIINGQKTWTTLAQ 163

Query: 211 FADVLVIFARNTTTNQ----INGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVP 266
            AD +    R   T +    I+  LV   + G+TV  I+   G   V+  ++    V VP
Sbjct: 164 HADWIFCLCRTDPTAKKQMGISFILVDMKSKGITVRPIQTIDGG--VEVNEVFFDDVEVP 221

Query: 267 DEDRLPGVNSFQDTSKVSEGEE 288
            E+ +   N   D +K   G E
Sbjct: 222 YENLVGEENKGWDYAKFLLGNE 243

Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris. Length = 395

>gnl|CDD|237277 PRK13026, PRK13026, acyl-CoA dehydrogenase; Reviewed

 Score = 58.0 bits (141), Expect = 3e-09
 Identities = 43/133 (32%), Positives = 61/133 (45%), Gaps = 18/133 (13%)

Query: 151 GSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTAT----KVEG----GWILEGQ 202
           G++EQK  +LP LA    I C+ALT P  GSDA A+  T      + EG    G  L   
Sbjct: 175 GTQEQKDYWLPRLADGTEIPCFALTGPEAGSDAGAIPDTGIVCRGEFEGEEVLGLRLTWD 234

Query: 203 KRWIGNSTFADVLVIFAR---------NTTTNQINGYLVKKDAPGLTVTKIENKIGLRIV 253
           KR+I  +  A VL +  +         +     I   L+  D PG+ + +  N +G+   
Sbjct: 235 KRYITLAPVATVLGLAFKLRDPDGLLGDKKELGITCALIPTDHPGVEIGRRHNPLGMAF- 293

Query: 254 QNGDILLKKVFVP 266
            NG    K VF+P
Sbjct: 294 MNGTTRGKDVFIP 306

Length = 774

>gnl|CDD|236528 PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed

 Score = 57.5 bits (140), Expect = 4e-09
 Identities = 45/142 (31%), Positives = 62/142 (43%), Gaps = 36/142 (25%)

Query: 151 GSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQ-------- 202
           G++EQK  YLP LA+   I C+ALT P  GSDA ++  T    +G W  +G+        
Sbjct: 176 GTDEQKDHYLPRLARGEEIPCFALTSPEAGSDAGSIPDTGVVCKGEW--QGEEVLGMRLT 233

Query: 203 --KRWIGNSTFADV-----LVIFARNTTTNQINGYLVKKDAPGLTVTKIEN-----KIGL 250
             KR+I   T A +     L     +      +G L  K+  G+T   I       +IG 
Sbjct: 234 WNKRYI---TLAPIATVLGLAFKLYDP-----DGLLGDKEDLGITCALIPTDTPGVEIGR 285

Query: 251 R------IVQNGDILLKKVFVP 266
           R        QNG    K VF+P
Sbjct: 286 RHFPLNVPFQNGPTRGKDVFIP 307

Length = 777

>gnl|CDD|178062 PLN02443, PLN02443, acyl-coenzyme A oxidase

 Score = 54.8 bits (132), Expect = 3e-08
 Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 27/162 (16%)

Query: 134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTAT-- 191
            +  +H  + +  I   G+EEQ++K+LP   ++  I C+A TE  +GS+   L TTAT  
Sbjct: 97  GYTDLHWGMFVPAIKGQGTEEQQKKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFD 156

Query: 192 -KVEGGWI----LEGQKRWIGN----STFADVLVIFARNTTTNQ---INGYLVK------ 233
            K +   I    L   K W G     ST A   V++AR  T  +   I+G++V+      
Sbjct: 157 PKTDEFVIHSPTLTSSKWWPGGLGKVSTHA---VVYARLITNGKDHGIHGFIVQLRSLDD 213

Query: 234 -KDAPGLTVTKIENKIG---LRIVQNGDILLKKVFVPDEDRL 271
               PG+TV  I  K G      + NG +    V +P +  L
Sbjct: 214 HSPLPGVTVGDIGMKFGNGAYNTMDNGFLRFDHVRIPRDQML 255

Length = 664

>gnl|CDD|173852 cd01163, DszC, Dibenzothiophene (DBT) desulfurization enzyme C

 Score = 53.5 bits (129), Expect = 5e-08
 Identities = 45/197 (22%), Positives = 78/197 (39%), Gaps = 32/197 (16%)

Query: 94  KLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAML-------- 145
            LG LRV     K YG  G S+      + E+A  D          S++A          
Sbjct: 35  GLGTLRVP----KEYGGLGASLPDLYEVVRELAAAD----------SNIAQALRAHFGFV 80

Query: 146 -TIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVE---GGWILEG 201
             + L G E+ ++++   +     I   A++E      +    T  T      GG++L G
Sbjct: 81  EALLLAGPEQFRKRWFGRVLN-GWIFGNAVSE----RGSVRPGTFLTATVRDGGGYVLNG 135

Query: 202 QKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLK 261
           +K +   + F+D + + A +     +    V  D PG+TV    +  G R+  +G +   
Sbjct: 136 KKFYSTGALFSDWVTVSALDEEGKLVFA-AVPTDRPGITVVDDWDGFGQRLTASGTVTFD 194

Query: 262 KVFVPDEDRLPGVNSFQ 278
            V V  ++ LP  N+  
Sbjct: 195 NVRVEPDEVLPRPNAPD 211

DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup. Length = 377

>gnl|CDD|173844 cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 8/106 (7%)

Query: 144 MLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYG-SDASALNTTATKVEGGWILEGQ 202
           M  +   GSEEQK+++L  L      + +A+TEP    SDA+ +  +  +    +++ G+
Sbjct: 101 MEVLHRYGSEEQKKQWLEPLLDGKIRSAFAMTEPDVASSDATNIECSIERDGDDYVINGR 160

Query: 203 KRWIGNSTFAD--VLVIFARNTTTN-----QINGYLVKKDAPGLTV 241
           K W   +      + ++  R          Q +  LV  D PG+T+
Sbjct: 161 KWWSSGAGDPRCKIAIVMGRTDPDGAPRHRQQSMILVPMDTPGVTI 206

FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position. Length = 394

>gnl|CDD|215342 PLN02636, PLN02636, acyl-coenzyme A oxidase

 Score = 52.6 bits (126), Expect = 1e-07
 Identities = 55/197 (27%), Positives = 92/197 (46%), Gaps = 36/197 (18%)

Query: 121 AIAE-IARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAY 179
           AI E +  VD S    + V  SL   ++   G+++ + KY   +  L+   C+A+TE  +
Sbjct: 125 AITEAVGSVDMSLGIKLGVQYSLWGGSVINLGTKKHRDKYFDGIDNLDYPGCFAMTELHH 184

Query: 180 GSDASALNTTAT--KVEGGWIL----EGQ-KRWIGNST----FADVLVIFAR-------- 220
           GS+   L TTAT   +   +++    +G  K WIGN+     FA V   FAR        
Sbjct: 185 GSNVQGLQTTATFDPLTDEFVINTPNDGAIKWWIGNAAVHGKFATV---FARLKLPTHDS 241

Query: 221 -NTTTNQINGYLVK----KD---APGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLP 272
              +   ++ ++V     K     PG+ +    +K+GL  V NG +  + V +P ++ L 
Sbjct: 242 KGVSDMGVHAFIVPIRDMKTHQVLPGVEIRDCGHKVGLNGVDNGALRFRSVRIPRDNLL- 300

Query: 273 GVNSFQDTSKVSEGEET 289
             N F D S+  +G+ T
Sbjct: 301 --NRFGDVSR--DGKYT 313

Length = 686

>gnl|CDD|132247 TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase, small subunit

 Score = 51.9 bits (124), Expect = 2e-07
 Identities = 41/151 (27%), Positives = 64/151 (42%), Gaps = 14/151 (9%)

Query: 151 GSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST 210
           GS  QK  +LP +   +    +A  E     D   ++TTA K   GW+++G+K  + N  
Sbjct: 101 GSAAQKAAHLPGIIDGSKTFAFAQLEKNSRYDLGDVSTTAKKTGDGWVIDGEKFVVLNGE 160

Query: 211 FADVLVIFARNTTTNQ----INGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFV- 265
            AD L++ AR     +    I  +LV   A G+T+     + GL      DI    V V 
Sbjct: 161 TADTLIVTARTKGARRDRTGIGVFLVPAGAKGVTIKGYPTQDGL---HAADITFTGVVVG 217

Query: 266 ------PDEDRLPGVNSFQDTSKVSEGEETV 290
                   E+ LP +    D ++ +   E V
Sbjct: 218 ADAAIGDPENALPLIERVVDDARAALCAEAV 248

Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris. Length = 378

>gnl|CDD|185635 PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provisional

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 9/104 (8%)

Query: 143 AMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV-EGGWILEG 201
           A  T+   GSEEQK++YL  L          LTEP  G+D   + T A    +G + + G
Sbjct: 156 AANTLMAWGSEEQKEQYLTKLVSGEWSGTMCLTEPQCGTDLGQVKTKAEPSADGSYKITG 215

Query: 202 QKRWI--GNSTFAD--VLVIFAR----NTTTNQINGYLVKKDAP 237
            K +I  G+    +  V ++ AR      TT  ++ +LV +   
Sbjct: 216 TKIFISAGDHDLTENIVHIVLARLPNSLPTTKGLSLFLVPRHVV 259

Length = 622

>gnl|CDD|185639 PTZ00460, PTZ00460, acyl-CoA dehydrogenase; Provisional

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 18/137 (13%)

Query: 138 VHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTAT--KVEG 195
           VH ++ +    + G++EQ   ++PSL     + C+A TE  +GSD   L TTAT  K   
Sbjct: 97  VHFAMVIPAFQVLGTDEQINLWMPSLLNFEIVGCYAQTELGHGSDVQNLETTATYDKQTN 156

Query: 196 GWIL-----EGQKRWIGNSTF-ADVLVIFARNTTTN----------QINGYLVKKDAPGL 239
            +++     E  K W G   F  +  +++A+               +I      K   G+
Sbjct: 157 EFVIHTPSVEAVKFWPGELGFLCNFALVYAKLIVNGKNKGVHPFMVRIRDKETHKPLQGV 216

Query: 240 TVTKIENKIGLRIVQNG 256
            V  I  K+G  +  NG
Sbjct: 217 EVGDIGPKMGYAVKDNG 233

Length = 646

>gnl|CDD|188537 TIGR04022, sulfur_SfnB, sulfur acquisition oxidoreductase, SfnB family

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 48/173 (27%), Positives = 72/173 (41%), Gaps = 6/173 (3%)

Query: 106 KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAML-TIALCGSEEQKQKYLPSLA 164
           + YG  G S    A  IA I+  D S       H     L  + L GSEEQK+ +   + 
Sbjct: 54  RAYGGAGVSYATLAEVIAIISAADPSLGQIPQNH--FYALEVLRLTGSEEQKRFFFGEVL 111

Query: 165 QLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTT 224
                   A +E     +     T   +   G+ L G+K +   + FA  + + A +   
Sbjct: 112 AGERFGN-AFSE-RGTRNVLDFQTRLRRDGDGYRLNGRKFYSTGALFAHWIPVLALDDDG 169

Query: 225 NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSF 277
             +  + V +DAPGLTV    +  G R   +G +LL  V VP E  +P   +F
Sbjct: 170 RPVLAF-VPRDAPGLTVIDDWSGFGQRTTASGTVLLDDVRVPAEHVVPIQRAF 221

Members of this protein family belong to the greater family of acyl-CoA dehydrogenases. This family includes the sulfate starvation induced protein SfnB of Pseudomonas putida strain DS1, which is both encoded nearby to and phylogenetically closely correlated with the dimethyl sulphone monooxygenase SfnG. This family shows considerable sequence similarity to the Rhodococcus dibenzothiophene desulfurization enzyme DszC, although that enzyme falls outside of the scope of this family [Central intermediary metabolism, Sulfur metabolism]. Length = 391

>gnl|CDD|185636 PTZ00457, PTZ00457, acyl-CoA dehydrogenase; Provisional

 Score = 47.2 bits (112), Expect = 6e-06
 Identities = 42/144 (29%), Positives = 63/144 (43%), Gaps = 11/144 (7%)

Query: 108 YGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLN 167
           YG  G   T  A+   E+     S     + HS      ++  GS+E K KYL +++   
Sbjct: 74  YGGLGLGHTAHALIYEEVGTNCDSKLLSTIQHSGFCTYLLSTVGSKELKGKYLTAMSDGT 133

Query: 168 TIACWALTEPAYGSDASALNTTAT-KVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQ 226
            +  WA TE   GSD S   T A+   +G ++L GQKR    ++    LV+    T T  
Sbjct: 134 IMMGWA-TEEGCGSDISMNTTKASLTDDGSYVLTGQKRCEFAASATHFLVLAKTLTQTAA 192

Query: 227 ING---------YLVKKDAPGLTV 241
             G         ++  KDA G++V
Sbjct: 193 EEGATEVSRNSFFICAKDAKGVSV 216

Length = 520

>gnl|CDD|173843 cd01154, AidB, Proteins involved in DNA damage response, similar to the AidB gene product

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 16/125 (12%)

Query: 151 GSEEQKQKYLPSLAQ----LNTIACWALTEPAYGSDASALNTTATKVEGG-WILEGQKRW 205
           G EE KQ     L+           W +TE   GSD  A  TTA +  GG + L G K W
Sbjct: 127 GPEELKQYLPGLLSDRYKTGLLGGTW-MTEKQGGSDLGANETTAERSGGGVYRLNGHK-W 184

Query: 206 IGNSTFADVLVIFAR----NTTTNQINGYLVKKDAP-----GLTVTKIENKIGLRIVQNG 256
             ++  AD  ++ AR          ++ +LV +        G  + ++++K+G R V  G
Sbjct: 185 FASAPLADAALVLARPEGAPAGARGLSLFLVPRLLEDGTRNGYRIRRLKDKLGTRSVATG 244

Query: 257 DILLK 261
           ++   
Sbjct: 245 EVEFD 249

AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates. Length = 418

>gnl|CDD|215178 PLN02312, PLN02312, acyl-CoA oxidase

 Score = 43.6 bits (103), Expect = 9e-05
 Identities = 43/174 (24%), Positives = 73/174 (41%), Gaps = 20/174 (11%)

Query: 125 IARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDAS 184
           I   D S +  + VH  L    I   G++    K+L          C+A+TE  +GS+  
Sbjct: 142 IGIYDHSLAIKLGVHFFLWGGAIKFLGTKRHHDKWLKDTEDYVVKGCFAMTELGHGSNVR 201

Query: 185 ALNTTAT--KVEGGWILE-----GQKRWIGNST-FADVLVIFAR---NTTTNQINGYLVK 233
            + T  T       +++       QK WIG +   A   ++F++   N     ++ ++ +
Sbjct: 202 GIETVTTYDPKTEEFVINTPCESAQKYWIGGAANHATHTIVFSQLHINGKNEGVHAFIAQ 261

Query: 234 -KDA-----PGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTS 281
            +D      P + +    +KIGL  V NG I    + +P E+ L   NS  D S
Sbjct: 262 IRDQDGNICPNIRIADCGHKIGLNGVDNGRIWFDNLRIPRENLL---NSVADVS 312

Length = 680

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	325
KOG0139	398	consensus Short-chain acyl-CoA dehydrogenase [Lipi	100.0
KOG0138	432	consensus Glutaryl-CoA dehydrogenase [Amino acid t	100.0
KOG0141	421	consensus Isovaleryl-CoA dehydrogenase [Amino acid	100.0
KOG0140	408	consensus Medium-chain acyl-CoA dehydrogenase [Lip	100.0
PLN02526	412	acyl-coenzyme A oxidase	100.0
PRK09463	777	fadE acyl-CoA dehydrogenase; Reviewed	100.0
cd01151	386	GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehyd	100.0
PRK13026	774	acyl-CoA dehydrogenase; Reviewed	100.0
TIGR03203	378	pimD_small pimeloyl-CoA dehydrogenase, small subun	100.0
PRK03354	380	crotonobetainyl-CoA dehydrogenase; Validated	100.0
cd01156	376	IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA d	100.0
PRK12341	381	putative acyl-CoA dehydrogenase; Provisional	100.0
PLN02519	404	isovaleryl-CoA dehydrogenase	100.0
cd01162	375	IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA d	100.0
cd01157	378	MCAD Medium chain acyl-CoA dehydrogenase. MCADs ar	100.0
TIGR03207	372	cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogen	100.0
cd01161	409	VLCAD Very long chain acyl-CoA dehydrogenase. VLCA	100.0
cd01160	372	LCAD Long chain acyl-CoA dehydrogenase. LCAD is an	100.0
PTZ00461	410	isovaleryl-CoA dehydrogenase; Provisional	100.0
TIGR03204	395	pimC_large pimeloyl-CoA dehydrogenase, large subun	100.0
cd01158	373	SCAD_SBCAD Short chain acyl-CoA dehydrogenases and	100.0
cd01155	394	ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE	100.0
COG1960	393	CaiA Acyl-CoA dehydrogenases [Lipid metabolism]	100.0
cd01153	407	ACAD_fadE5 Putative acyl-CoA dehydrogenases simila	100.0
KOG0137	634	consensus Very-long-chain acyl-CoA dehydrogenase [	100.0
PLN02636	686	acyl-coenzyme A oxidase	100.0
PLN02876	822	acyl-CoA dehydrogenase	100.0
cd01152	380	ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases	100.0
PTZ00456	622	acyl-CoA dehydrogenase; Provisional	100.0
cd01163	377	DszC Dibenzothiophene (DBT) desulfurization enzyme	100.0
PLN02312	680	acyl-CoA oxidase	100.0
cd01154	418	AidB Proteins involved in DNA damage response, sim	100.0
PTZ00457	520	acyl-CoA dehydrogenase; Provisional	100.0
cd01159	370	NcnH Naphthocyclinone hydroxylase. Naphthocyclinon	100.0
cd00567	327	ACAD Acyl-CoA dehydrogenase. Both mitochondrial ac	100.0
PRK11561	538	isovaleryl CoA dehydrogenase; Provisional	100.0
KOG1469	392	consensus Predicted acyl-CoA dehydrogenase [Genera	100.0
cd01150	610	AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl	100.0
PTZ00460	646	acyl-CoA dehydrogenase; Provisional	100.0
PLN02443	664	acyl-coenzyme A oxidase	99.97
KOG0135	661	consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid t	99.9
PF02771	113	Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal	99.82
TIGR02309	477	HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxy	99.69
PF02770	52	Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle doma	99.65
KOG0136	670	consensus Acyl-CoA oxidase [Lipid transport and me	99.58
PF11794	264	HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N ter	98.5
COG2368	493	Aromatic ring hydroxylase [Secondary metabolites b	98.22
TIGR02310	519	HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxy	98.18
PF00441	150	Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal	93.12
PF14749	125	Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal;	87.97

>KOG0139 consensus Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=100.00  E-value=2.9e-59  Score=413.52  Aligned_cols=266  Identities=32%  Similarity=0.476  Sum_probs=255.8

Q ss_pred             CCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcc
Q 020535           54 LLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASC  132 (325)
Q Consensus        54 ~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~  132 (325)
                      .+++.++.+++.+++|+.+.+.|.+.+.|++..+|..+++.+.++|++++ +|++|||.|.+..+++.++|||++.|+++
T Consensus        36 ~l~E~e~~l~~tvrkfa~~~i~Plv~~mD~~~~~~~~v~k~~fe~Glmgv~vpeeyGGsG~df~~~~~v~EEisk~d~sv  115 (398)
T KOG0139|consen   36 ILSETEQMLQKTVRKFAQEEIKPLVREMDRESRYPASVIKGLFELGLMGVEVPEEYGGSGLDFFAAAIVIEEISKVDASV  115 (398)
T ss_pred             hcCcHHHHHHHHHHHHHHHhcchHHHhhhhhccCCHHHHHHHhhcCcceeecChhhCCCchhHHHHHHHHHHHhccCccc
Confidence            37899999999999999999999999999999999999999999999999 99999999999999999999999999999


Q ss_pred             hhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCCCC
Q 020535          133 STFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFA  212 (325)
Q Consensus       133 ~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~~A  212 (325)
                      ++++.+|+.+...+|..||+++||++|+|.+ .|+.+++||++||++|||+..+.|+|++++|.|+|||+|.||||+..|
T Consensus       116 ~~~v~v~ntL~~~~i~~fGteeqK~~~~P~~-~~d~vgsfAlSEpgaGSDa~A~~T~Ak~~Gd~~viNGsKmWItN~~~A  194 (398)
T KOG0139|consen  116 GVIVDVQNTLYLPLIIQFGTEEQKEKYLPKL-TGDLVGSFALSEPGAGSDAFALKTTAKKDGDDYVINGSKMWITNAGEA  194 (398)
T ss_pred             eeEEEecccccchHHHHhCcHHHHhhhcchh-hccccceeeecCCCCCcchHHhhhhHhhcCCeEEEecceeeecCCccc
Confidence            9999999999999999999999999888875 578899999999999999999999999999999999999999999999


Q ss_pred             CEEEEEEEeCC---CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhchhhh
Q 020535          213 DVLVIFARNTT---TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVSEGEE  288 (325)
Q Consensus       213 d~~~v~a~~~~---~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~~~r  288 (325)
                      ++++|++.++.   .+++++|+||+++||+++...++++|+|++.++.++|+||+||++++||+. .|+++.+..||.+|
T Consensus       195 ~~~lVfan~d~~~~~Kgit~fiV~rd~~Gl~~~k~eDKLGmRaSsTcql~fedVrVpks~IlGe~G~GykyAm~~Ln~gR  274 (398)
T KOG0139|consen  195 DWFLVFANADPSKGYKGITCFIVPRDTPGLSLGKKEDKLGMRASSTCQLHFEDVRVPKSSILGEYGKGYKYAIEVLNAGR  274 (398)
T ss_pred             ceEEEEEecChhhccCceeEEEeeCCCCCcccCCccccccccccceeeEEeccccccchhhcccCCcchHHHHHhcCccc
Confidence            99999999864   468999999999999999999999999999999999999999999999995 49999999999999


Q ss_pred             H--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535          289 T--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       289 ~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~  325 (325)
                      +  +++.+|     .+|.|+|. +.|+++|.|||++|.+|
T Consensus       275 Igi~Aqmlg-----laQ~c~d~tI~Y~q~R~~FGk~l~d~  309 (398)
T KOG0139|consen  275 IGIGAQMLG-----LAQGCFDETIPYAQERLQFGKRLLDF  309 (398)
T ss_pred             eeehhhhhh-----hhHhHHHhhhHHHHHHHHhcchhhhH
Confidence            9  999999     99999999 99999999999999875

>KOG0138 consensus Glutaryl-CoA dehydrogenase [Amino acid transport and metabolism]

Probab=100.00  E-value=5.6e-58  Score=398.38  Aligned_cols=304  Identities=37%  Similarity=0.557  Sum_probs=292.7

Q ss_pred             hhhhcccCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHH
Q 020535           16 ARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKL   95 (325)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l   95 (325)
                      .+..++..++....-.++.+.|.+.+|+..+|++++++.|++|++++++.+|++|++++.|...++.+...||.++..++
T Consensus        16 ~rs~~s~l~p~e~g~r~~s~~~~s~~P~f~qD~~~l~dqLT~dE~air~~~Reycq~~l~Prvtea~r~e~F~~~i~pem   95 (432)
T KOG0138|consen   16 LRSWVSSLAPTERGGRTQSQLSKSSRPEFWQDPLVLEDQLTEDEIAIRDTFREYCQERLMPRVTEANRNEVFDREIIPEM   95 (432)
T ss_pred             eeehhhcCchhhhccccccccccccCCccccchhhhhhhcCHHHHHHHHHHHHHHHHHhhhHHHHHhhhccCChhhhhhh
Confidence            35667788888888888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCcccCCcccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEec
Q 020535           96 GALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALT  175 (325)
Q Consensus        96 ~~~Gl~~~~p~~~GG~g~s~~~~~~v~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~t  175 (325)
                      ..+|+++...+.||..|.|...+..+.+|+.|.|.+....+.+|+++++.+|..||+++||++|||.+++|++++||++|
T Consensus        96 GsmGvlG~tikGYGCaG~S~vaygl~~rEveRVDs~yrs~~sVqsSL~m~~Iy~~GSE~QkqkYlPslA~g~~igcfgLT  175 (432)
T KOG0138|consen   96 GSMGVLGPTIKGYGCAGVSSVAYGLLAREVERVDSGYRSAMSVQSSLVMGPIYAYGSEEQKQKYLPSLAKGKLIGCFGLT  175 (432)
T ss_pred             hccccccCcccCcCCCchHHHHHHHHHHHHHHhhhhchhhhhhhhhhhhhhHhhcCCHHHHhhhhhhhhcCceeeEEecc
Confidence            99999999779999999999999999999999999998889999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCceEEEEeCCE--EEEEeEeecccCCCCCCEEEEEEEeCCCCCeEEEEEeCCCCCeEEeccCCccCcccc
Q 020535          176 EPAYGSDASALNTTATKVEGG--WILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIV  253 (325)
Q Consensus       176 Ep~~Gsd~~~~~~~a~~~~~g--~~lnG~K~~it~~~~Ad~~~v~a~~~~~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~  253 (325)
                      ||++|||+..+.|+|++++.+  |.|||+|.||+|+++||+++|+||...++.+.-|+|+++.+|++...+..++++|++
T Consensus       176 EPn~GSdpsgmeT~At~~e~~ktyklNGsKtWI~nsp~aDl~vvwAr~~t~n~I~GFi~~k~~~GL~apkI~gK~sLRas  255 (432)
T KOG0138|consen  176 EPNHGSDPSGMETRATYDESNKTYKLNGSKTWITNSPMADLFVVWARCETDNKIRGFILEKGMRGLSAPKIEGKFSLRAS  255 (432)
T ss_pred             CCCCCCCcccccceeEEccCCceEEECCeeeeecCCcccceEEEEEecccCCceeeEEEecCCCCCcCCCcCCeeeeeec
Confidence            999999999999999999998  999999999999999999999999987788999999999999999999999999999


Q ss_pred             ceeeEEEeeeeeCCCCCcCCCCChHHHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCC
Q 020535          254 QNGDILLKKVFVPDEDRLPGVNSFQDTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQI  324 (325)
Q Consensus       254 ~~~~v~f~~v~Vp~~~~lg~~~g~~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~  324 (325)
                      .++.|-++||+||++++|...+++.-...+++..|.  ++..+|     +++.+++. .+|..+|+|||+||+.
T Consensus       256 ~tG~Ilmd~V~VPeE~~LPg~~s~qgpf~cLnnaR~giAWg~lG-----ase~c~~~arqY~ldRkQFG~PLAa  324 (432)
T KOG0138|consen  256 ATGMILMDGVEVPEENLLPGASSLQGPFGCLNNARYGIAWGALG-----ASEFCLHTARQYTLDRKQFGRPLAA  324 (432)
T ss_pred             ccCceeecCCcCChhhcCCCccccCCchhhhhhhhhheeehhch-----hHHHHHHHHHHHHHHHHHhCCchhH
Confidence            999999999999999999998899889999999999  999999     99999999 9999999999999974

>KOG0141 consensus Isovaleryl-CoA dehydrogenase [Amino acid transport and metabolism; Lipid transport and metabolism]

Probab=100.00  E-value=5.9e-58  Score=399.35  Aligned_cols=266  Identities=27%  Similarity=0.405  Sum_probs=256.7

Q ss_pred             CCHHHHHHHHHHHHHHHhhccccHHHHHHhCCC--ChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCc
Q 020535           55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEF--PFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDAS  131 (325)
Q Consensus        55 l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~--p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s  131 (325)
                      +++|++.|++.+++|+++++.|.+.++|+.+.|  -+++|+++.+.|++++ .|++|||.|.+.+..+.++||++|++..
T Consensus        41 ~~~e~~~~r~sv~kF~qeelaP~a~eidk~n~~~~~r~~WkklG~~gllGita~~~~GG~G~~y~~h~ivmEE~sra~g~  120 (421)
T KOG0141|consen   41 LSDEQDQLRESVRKFFQEELAPHASEIDKANEFKDLREFWKKLGKQGLLGITAPEEYGGSGGGYLSHCIVMEEISRASGG  120 (421)
T ss_pred             CCHHHHHHHHHHHHHHHHhhcchhhhhhhcCCcchHHHHHHHhhhcCcccccchhhhCCCchhHHHHHHHHHHHHhhcCC
Confidence            789999999999999999999999999999999  5789999999999999 9999999999999999999999999999


Q ss_pred             chhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCCC
Q 020535          132 CSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTF  211 (325)
Q Consensus       132 ~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~~  211 (325)
                      +++.++.|+.+++..|.+.|+++|+++|||++.+|+-++++|+|||++|||+..+.++|++++++|+|||.|.||||++.
T Consensus       121 v~lsygaHSnlcinqlvrnGseeQkekylPkl~sGe~iGalAMsEp~AGSDvv~mK~~Aek~g~~yiLNGsK~witNG~~  200 (421)
T KOG0141|consen  121 VALSYGAHSNLCINQLVRNGSEEQKEKYLPKLISGEHIGALAMSEPGAGSDVVSMKLKAEKKGDDYILNGSKFWITNGPD  200 (421)
T ss_pred             cccccccccchHHHHHHhcCCHHHHHhhhhhhhcccccceeeecCCCCCCccceeeeeceecCCcEEecCcEEEEecCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEEEeCC-----CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCCC-ChHHHHhhch
Q 020535          212 ADVLVIFARNTT-----TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVN-SFQDTSKVSE  285 (325)
Q Consensus       212 Ad~~~v~a~~~~-----~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~~-g~~~~~~~l~  285 (325)
                      ||.++|.|+|+.     ..||++|||+++.||++..+..+++|||+..++++.|+|++||+++++|.++ |+-+++.-++
T Consensus       201 advliVyAkTd~~a~~~~hGIt~FiVEkgm~GFs~~~KLdKlGmrgsdTcELvFed~~vpas~ilg~enkGvYvlMsgLd  280 (421)
T KOG0141|consen  201 ADVLIVYAKTDHSAVPPSHGITAFIVEKGMPGFSTAQKLDKLGMRGSDTCELVFEDCKVPASNILGEENKGVYVLMSGLD  280 (421)
T ss_pred             CcEEEEEEecCCCCCCCcCceEEEEEcCCCcccccchhhHhhcCCCCcchheehhhccCcHHHhcCcCCceEEEEecCCC
Confidence            999999999963     3589999999999999999999999999999999999999999999999865 9999999999


Q ss_pred             hhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535          286 GEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       286 ~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~  325 (325)
                      ..|+  ++..+|     ++++++|. ..|+++|++||++|+.|
T Consensus       281 ~ERLvla~gplg-----lmqa~~d~~~~Y~~qR~afgk~ig~f  318 (421)
T KOG0141|consen  281 LERLVLAAGPLG-----LMQAALDETFPYAHQRKAFGKKIGHF  318 (421)
T ss_pred             hhHhhhccCchH-----HHHHHHHHhhhHHHHHHHhCCchhHH
Confidence            9999  888899     99999999 99999999999999875

>KOG0140 consensus Medium-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=100.00  E-value=4.2e-57  Score=393.78  Aligned_cols=267  Identities=29%  Similarity=0.437  Sum_probs=257.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCC
Q 020535           52 DDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDA  130 (325)
Q Consensus        52 ~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~  130 (325)
                      ++.|++++.++++.+++|..+++.|.+.++|+.++||.+++++..++|+... +|+.|||+|++.++.+.+.|+|+..|.
T Consensus        25 sf~L~e~qke~q~~A~kFa~~e~~P~aae~Dk~ge~P~~iirkA~~lG~~~~~ip~~~GG~Gls~l~t~lI~E~LayGCt  104 (408)
T KOG0140|consen   25 SFGLTEDQKEFQEAARKFAKDEMIPNAAEYDKSGEFPWEIIRKAHELGFMNTYIPEDYGGLGLSRLDTCLIFEALAYGCT  104 (408)
T ss_pred             ccCcchHHHHHHHHHHHHHHHhhccchhhhcccCCCcHHHHHHHHHcccCcccCccccCCCCchhHHHHHHHHHHHccch
Confidence            4669999999999999999999999999999999999999999999999999 999999999999999999999999999


Q ss_pred             cchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCC
Q 020535          131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST  210 (325)
Q Consensus       131 s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~  210 (325)
                      ++...+..|+ +++++|..+|+++||++||++++...++++.|+|||++|||+..+.|+|++.+|.|+|||.|.||||+.
T Consensus       105 g~~~~I~~~~-l~~~pi~~~gneeqKkk~lg~l~~~p~~asYcvTEPgAGSDvagikTka~KkGDeYiiNGsKawItg~G  183 (408)
T KOG0140|consen  105 GIQTAISIHN-LAAWPIILSGNEEQKKKYLGRLAEEPKVASYCVTEPGAGSDVAGIKTKAEKKGDEYIINGSKAWITGAG  183 (408)
T ss_pred             hHHHHHhccc-hhhhhehhcCcHHHHHhhhhhhhcchhhhhhhccCCCCCcchhhhhhhhhhcCCEEEEcCceeeeecCC
Confidence            9999888876 889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEEeCCC------CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCCC-ChHHHHhh
Q 020535          211 FADVLVIFARNTTT------NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVN-SFQDTSKV  283 (325)
Q Consensus       211 ~Ad~~~v~a~~~~~------~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~~-g~~~~~~~  283 (325)
                      .|+|++|+||++++      ++++.|+|+.++||++..+.+.+||.|..++..|+|+||+||.+++||.++ ||++.+..
T Consensus       184 ~anwyfVlaRtd~~pk~p~~Kaft~fiVe~dTpGlt~GkKE~nmGqr~sdTR~itFEDvrVP~~Nvlg~~G~GFkvAm~~  263 (408)
T KOG0140|consen  184 HANWYFVLARTDPDPKTPAGKAFTAFIVEGDTPGLTRGKKEKNMGQRCSDTRGITFEDVRVPKENVLGAPGAGFKVAMGG  263 (408)
T ss_pred             ccceEEEEEecCCCCCCCCCcceEEEEEeCCCCCcCcChhhhcccccCCCCceeeeeecccchhccccCCCccceehhhh
Confidence            99999999999653      469999999999999999999999999999999999999999999999865 99999999


Q ss_pred             chhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCC
Q 020535          284 SEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQI  324 (325)
Q Consensus       284 l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~  324 (325)
                      |+.+|.  ++.++|     ++++++++ .+|+.+|++||+||++
T Consensus       264 fd~tRp~vAa~alG-----~A~r~ld~a~ky~~eRK~FG~~iA~  302 (408)
T KOG0140|consen  264 FDKTRPNVAAGALG-----LAQRCLDEATKYALERKAFGTPIAN  302 (408)
T ss_pred             ccCCCCchhhhhhH-----HHHHHHHHHHHHHHHHHHhCcChhh
Confidence            999999  999999     99999999 9999999999999986

>PLN02526 acyl-coenzyme A oxidase

Probab=100.00  E-value=6.5e-53  Score=403.73  Aligned_cols=292  Identities=77%  Similarity=1.212  Sum_probs=271.8

Q ss_pred             ccccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-ccc
Q 020535           28 ISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIK  106 (325)
Q Consensus        28 ~~~~~~~~~p~~~~~~~~~d~~~~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~  106 (325)
                      .+..||+.+|.++||++-++++.|+..++++++++++.+++|+.+++.|...+.++...+|.++|++|.+.||+++ + +
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~p~~~~~~l~~~G~~~~~v-~   80 (412)
T PLN02526          2 VSVAFPQATPASIFPPSVSDYYQFDDLLTPEEQALRKRVRECMEKEVAPIMTEYWEKAEFPFHIIPKLGSLGIAGGTI-K   80 (412)
T ss_pred             cccccccCCCCCCCChhhccccccccCCCHHHHHHHHHHHHHHHHhcccchHHHHHhCCCCHHHHHHHHHCCCCcCcc-c
Confidence            4667899999999999989999999889999999999999999999999887777778899999999999999999 7 9


Q ss_pred             CCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCC
Q 020535          107 GYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASAL  186 (325)
Q Consensus       107 ~~GG~g~s~~~~~~v~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~  186 (325)
                      +|||.|+++.+.+.++|++++.|++++.++.+|..+++..|..+|+++||++|++++++|+.++++++|||+.|||+..+
T Consensus        81 ~~GG~G~~~~~~~~~~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~  160 (412)
T PLN02526         81 GYGCPGLSITASAIATAEVARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLDTVACWALTEPDYGSDASSL  160 (412)
T ss_pred             ccCCCCcCHHHHHHHHHHHHhhCchHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhC
Confidence            99999999999999999999999988766667766666789999999999999999999999999999999999999999


Q ss_pred             ceEEEEeCCEEEEEeEeecccCCCCCCEEEEEEEeCCCCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeC
Q 020535          187 NTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVP  266 (325)
Q Consensus       187 ~~~a~~~~~g~~lnG~K~~it~~~~Ad~~~v~a~~~~~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp  266 (325)
                      .|++++++|||+|||+|.||+|+..||+++|.+++++++++++|+||++.|||++.+.|+++|+|++++++++|+||+||
T Consensus       161 ~t~a~~~~gg~~lnG~K~~vs~~~~Ad~~lv~a~~~~~~~~~~flV~~~~~Gv~~~~~~~~~G~r~t~s~~v~f~~v~Vp  240 (412)
T PLN02526        161 NTTATKVEGGWILNGQKRWIGNSTFADVLVIFARNTTTNQINGFIVKKGAPGLKATKIENKIGLRMVQNGDIVLKDVFVP  240 (412)
T ss_pred             eeEEEEECCEEEEEEEEeeecCCCccCEEEEEEEeCCCCCeEEEEEcCCCCCeEcCCCCCccCcCCCCeeEEEEeeEEEC
Confidence            99999999999999999999999999999999998755678999999999999999999999999999999999999999


Q ss_pred             CCCCcCCCCChHHHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535          267 DEDRLPGVNSFQDTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       267 ~~~~lg~~~g~~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~  325 (325)
                      ++++|+..+++......++..|+  ++.++|     +++++++. ++|+++|+|||+||+++
T Consensus       241 ~~~~l~~~~~~~~~~~~~~~~r~~~aa~~lG-----~a~~al~~a~~~a~~R~~fg~~i~~~  297 (412)
T PLN02526        241 DEDRLPGVNSFQDTNKVLAVSRVMVAWQPIG-----ISMGVYDMCHRYLKERKQFGAPLAAF  297 (412)
T ss_pred             HHHhCCCcccHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhCeeCCCchhhh
Confidence            99999876688888888889988  888888     99999999 99999999999999864

>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed

Probab=100.00  E-value=3.1e-52  Score=418.04  Aligned_cols=282  Identities=24%  Similarity=0.298  Sum_probs=249.9

Q ss_pred             hhhhhcccCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHH-HHHHHHhhccccHHHHHH---hCCCChh
Q 020535           15 NARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMK-VRECMEKEIAPIMAEYWE---KAEFPFH   90 (325)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~~l~~~~~~l~~~-~~~f~~~~~~~~~~~~d~---~~~~p~~   90 (325)
                      =++++|+|+|+|++++++|+++                  +++|++++++. +++|+..     ..++++   .+.+|++
T Consensus        57 ~~~~lF~G~~~~~~l~~~p~~~------------------Ls~ee~~~~d~~v~~l~~~-----~~~~~~~~~~~~~P~e  113 (777)
T PRK09463         57 WEGELFSGKPDWKKLLNYPKPT------------------LTAEEQAFLDGPVEELCRM-----VNDWQITHELADLPPE  113 (777)
T ss_pred             hhhhhcCCCCChHHhcCCCCCC------------------CCHHHHHHHHHHHHHHHHH-----HHHHHHhccccCCCHH
Confidence            3789999999999999877754                  67999999986 7777653     233333   4689999


Q ss_pred             HHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhhHHH-HHHHhcCCHHHHHhhchhhhcCCc
Q 020535           91 VIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAM-LTIALCGSEEQKQKYLPSLAQLNT  168 (325)
Q Consensus        91 ~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~~~~~~~~~~~~~-~~l~~~g~~~q~~~~l~~l~~g~~  168 (325)
                      +|++|++.||+++ +|++|||.|++..+.+.++|++++.+.+++..+.+|++++. .+|..+|+++||++|||++++|+.
T Consensus       114 ~w~~L~e~G~~gl~IPeeyGG~Gls~~~~a~v~eeLg~~~~s~a~~~~v~~slg~~~lL~~~GteeQK~~yLp~La~Ge~  193 (777)
T PRK09463        114 VWQFIKEHGFFGMIIPKEYGGLEFSAYAHSRVLQKLASRSGTLAVTVMVPNSLGPGELLLHYGTDEQKDHYLPRLARGEE  193 (777)
T ss_pred             HHHHHHHCCCCcCCCchhhCCCCCCHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCc
Confidence            9999999999999 99999999999999999999999999888776777777764 578999999999999999999999


Q ss_pred             eeEEEecCCCCCCCCCCCceEE-----EEeCC---EEEEEeEeecccCCCCCCEEEEEEEe-CC--------CCCeEEEE
Q 020535          169 IACWALTEPAYGSDASALNTTA-----TKVEG---GWILEGQKRWIGNSTFADVLVIFARN-TT--------TNQINGYL  231 (325)
Q Consensus       169 ~~~~a~tEp~~Gsd~~~~~~~a-----~~~~~---g~~lnG~K~~it~~~~Ad~~~v~a~~-~~--------~~~~~~~l  231 (325)
                      ++|+|+|||++|||+..+.|++     +++++   ||+|||+|.||||++.||+++|++++ ++        +.++++||
T Consensus       194 i~afAlTEP~aGSDaa~i~Tta~~~~a~~dGd~~~g~vLNG~K~~IT~a~~Ad~l~V~ar~~dp~~~~g~~~~~Git~fL  273 (777)
T PRK09463        194 IPCFALTSPEAGSDAGSIPDTGVVCKGEWQGEEVLGMRLTWNKRYITLAPIATVLGLAFKLYDPDGLLGDKEDLGITCAL  273 (777)
T ss_pred             eeEEEecCCCcCCCcccccccceeeeeeecCCcccceEEEEEEEeeCCCCccCEEEEEEEecCcccccCCCCCCceEEEE
Confidence            9999999999999999888654     44566   69999999999999999999999986 21        34799999


Q ss_pred             EeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCC----CCChHHHHhhchhhh-H--HHhhcccCcHHHHHH
Q 020535          232 VKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG----VNSFQDTSKVSEGEE-T--VWSTISSFSDQPAET  304 (325)
Q Consensus       232 v~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~----~~g~~~~~~~l~~~r-~--aa~~~G~~~~~~a~~  304 (325)
                      ||++.|||++.+.++++|++ ..++++.|+||+||.+++||.    +.|+++++..++.+| +  ++.++|     ++++
T Consensus       274 Vp~d~pGV~ig~~~~~lG~r-~~~g~v~fddV~VP~d~lLG~~~~~G~G~~~l~~~L~~gR~i~laA~avG-----~ar~  347 (777)
T PRK09463        274 IPTDTPGVEIGRRHFPLNVP-FQNGPTRGKDVFIPLDYIIGGPKMAGQGWRMLMECLSVGRGISLPSNSTG-----GAKL  347 (777)
T ss_pred             EECCCCCeEecccccccCcc-cccceEEeeeeecCHHHhcccccccChHHHHHHHHHHHHHHHHHHHHHHH-----HHHH
Confidence            99999999999999999998 579999999999999999986    459999999999999 6  888889     9999


Q ss_pred             HHHH-hhhhhhcccCCCCCCCC
Q 020535          305 CSDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       305 al~~-~~ya~~R~~fG~pl~~~  325 (325)
                      +++. ++|+++|+|||+||+++
T Consensus       348 al~~Av~YA~~R~QFG~pIg~f  369 (777)
T PRK09463        348 AALATGAYARIRRQFKLPIGKF  369 (777)
T ss_pred             HHHHHHHHHHHHHHcCCChhhc
Confidence            9999 99999999999999875

>cd01151 GCD Glutaryl-CoA dehydrogenase

Probab=100.00  E-value=4e-51  Score=388.54  Aligned_cols=270  Identities=41%  Similarity=0.703  Sum_probs=252.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCCcccCCCCCCccHHHHHHHHHHHHccCC
Q 020535           51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDA  130 (325)
Q Consensus        51 ~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~p~~~GG~g~s~~~~~~v~e~la~~~~  130 (325)
                      |++.++++++++++.+++|+++++.|.+.+.++.+.+|.++|++|.+.||++++|++|||.|+++.+...++|+|++.+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~vP~~~GG~g~~~~~~~~v~e~l~~~~~   88 (386)
T cd01151           9 LDDLLTEEERAIRDTAREFCQEELAPRVLEAYREEKFDRKIIEEMGELGLLGATIKGYGCAGLSSVAYGLIAREVERVDS   88 (386)
T ss_pred             cccCCCHHHHHHHHHHHHHHHHhcCccHHHHHHhCCCCHHHHHHHHHCCCCccCccccCCCCCCHHHHHHHHHHHHhhCh
Confidence            55668999999999999999999999988888888899999999999999999999999999999999999999999999


Q ss_pred             cchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCC
Q 020535          131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST  210 (325)
Q Consensus       131 s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~  210 (325)
                      ++++.+.+|..++...|..+|+++|+++|++++++|+.++|+++|||++|||+..+.|+|+++++||+|||+|.||||+.
T Consensus        89 s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~~~  168 (386)
T cd01151          89 GYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPKLASGELIGCFGLTEPNHGSDPGGMETRARKDGGGYKLNGSKTWITNSP  168 (386)
T ss_pred             hHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeEEEEEECCEEEEEEEEEeecCCC
Confidence            98777667665666778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEEeCCCCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCCCChHHHHhhchhhhH-
Q 020535          211 FADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVSEGEET-  289 (325)
Q Consensus       211 ~Ad~~~v~a~~~~~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~~g~~~~~~~l~~~r~-  289 (325)
                      .||+++|++|+++++++++|+||++.|||++.+.|+++|+++++++++.|+||+||++++++...|+......++..|+ 
T Consensus       169 ~Ad~~lv~ar~~~~~~~~~flVp~~~~gv~i~~~~~~~G~~g~~s~~v~f~~v~Vp~~~~l~~~~g~~~~~~~~~~~r~~  248 (386)
T cd01151         169 IADVFVVWARNDETGKIRGFILERGMKGLSAPKIQGKFSLRASITGEIVMDNVFVPEENLLPGAEGLRGPFKCLNNARYG  248 (386)
T ss_pred             cCCEEEEEEEECCCCcEEEEEEcCCCCCeecCCCCCCcCCCCCceeEEEEccEEeCHHHcCCccccHHHHHHHHHHHHHH
Confidence            9999999999876667899999999999999999999999999999999999999999999887788888888999997 


Q ss_pred             -HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535          290 -VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       290 -aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~  325 (325)
                       ++.++|     +++++++. ++|+++|+|||+||+++
T Consensus       249 ~aa~~lG-----~a~~al~~a~~~a~~R~~~g~~i~~~  281 (386)
T cd01151         249 IAWGALG-----AAEDCYHTARQYVLDRKQFGRPLAAF  281 (386)
T ss_pred             HHHHHHH-----HHHHHHHHHHHHHHhCeecCCchhhh
Confidence             788888     99999999 99999999999999863

Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.

>PRK13026 acyl-CoA dehydrogenase; Reviewed

Probab=100.00  E-value=2.1e-51  Score=410.74  Aligned_cols=285  Identities=24%  Similarity=0.295  Sum_probs=247.1

Q ss_pred             hhhhhcccCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHH-HHHHHHHhhccccHHHHHHhCCCChhHHH
Q 020535           15 NARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRM-KVRECMEKEIAPIMAEYWEKAEFPFHVIP   93 (325)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~~l~~~~~~l~~-~~~~f~~~~~~~~~~~~d~~~~~p~~~~~   93 (325)
                      =++++|+|+|+|+.++++|+++                  +++|++++.+ .++++++ .+.. ....++.+.+|+++|+
T Consensus        56 ~~~~lf~G~~~~~~l~~~p~~~------------------l~~eeq~fl~~~v~~l~~-~~~e-~~~~~~~~~~P~evw~  115 (774)
T PRK13026         56 WEGELFSGKPDWQKLHSYPKPT------------------LTAEEQAFIDNEVETLLT-MLDD-WDIVQNRKDLPPEVWD  115 (774)
T ss_pred             hhhhhcCCCCChhhcCCCCccc------------------cCHHHHHHHHHHHHHHHh-hhhh-hhhhhhhcCCCHHHHH
Confidence            4788999999999999777653                  6677777776 4677655 2222 2223567899999999


Q ss_pred             HHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhhHH-HHHHHhcCCHHHHHhhchhhhcCCceeE
Q 020535           94 KLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLA-MLTIALCGSEEQKQKYLPSLAQLNTIAC  171 (325)
Q Consensus        94 ~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~~~~~~~~~~~~-~~~l~~~g~~~q~~~~l~~l~~g~~~~~  171 (325)
                      +|++.||+++ +|++|||.|++..+.+.++|++++.+.+.+..+.+|++++ ..+|..+|+++||++|||++++|+.++|
T Consensus       116 ~Lae~Gl~gl~IPeeyGGlG~s~~~~a~V~eela~~~~s~a~~~~v~~slg~~~lL~~~GTeEQK~~yLP~LAsGe~i~a  195 (774)
T PRK13026        116 YLKKEGFFALIIPKEYGGKGFSAYANSTIVSKIATRSVSAAVTVMVPNSLGPGELLTHYGTQEQKDYWLPRLADGTEIPC  195 (774)
T ss_pred             HHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHhhhHHHhCCCeEEE
Confidence            9999999999 9999999999999999999999998888777666777666 4588999999999999999999999999


Q ss_pred             EEecCCCCCCCCCCCceEEE-----EeCC---EEEEEeEeecccCCCCCCEEEEEEEe-CC--------CCCeEEEEEeC
Q 020535          172 WALTEPAYGSDASALNTTAT-----KVEG---GWILEGQKRWIGNSTFADVLVIFARN-TT--------TNQINGYLVKK  234 (325)
Q Consensus       172 ~a~tEp~~Gsd~~~~~~~a~-----~~~~---g~~lnG~K~~it~~~~Ad~~~v~a~~-~~--------~~~~~~~lv~~  234 (325)
                      +|+|||++|||+.+++|+++     ++++   ||+|||+|.||||++.||+++|++++ ++        +.++++|+||+
T Consensus       196 fAlTEP~aGSDaasi~Ttav~t~a~~dGd~~~gwvLNG~K~~IT~A~~Ad~~~v~ar~~dpd~~~g~~~~~GiT~fLVp~  275 (774)
T PRK13026        196 FALTGPEAGSDAGAIPDTGIVCRGEFEGEEVLGLRLTWDKRYITLAPVATVLGLAFKLRDPDGLLGDKKELGITCALIPT  275 (774)
T ss_pred             EEecCCCCCCchhcccceeeeeeeeecCCccccEEEEEEEEeecCccccCEEEEEEEeeCccccccCCCCCceEEEEEEC
Confidence            99999999999999986654     4666   69999999999999999999888764 21        24799999999


Q ss_pred             CCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCC----CCChHHHHhhchhhh-H--HHhhcccCcHHHHHHHHH
Q 020535          235 DAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG----VNSFQDTSKVSEGEE-T--VWSTISSFSDQPAETCSD  307 (325)
Q Consensus       235 ~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~----~~g~~~~~~~l~~~r-~--aa~~~G~~~~~~a~~al~  307 (325)
                      +.|||++.+.++++|++. .++++.|+||+||.+++||+    +.||++++..++.+| +  ++.++|     +++.+++
T Consensus       276 d~pGV~ig~~~~~lG~~~-~~g~v~fdDV~VP~d~lLG~~~~~G~G~~~l~~~L~~gR~i~laA~a~G-----~A~~al~  349 (774)
T PRK13026        276 DHPGVEIGRRHNPLGMAF-MNGTTRGKDVFIPLDWIIGGPDYAGRGWRMLVECLSAGRGISLPALGTA-----SGHMATR  349 (774)
T ss_pred             CCCCeEeeccccccccCc-ccceEEEeeeEccHHHhcCCcccCChHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH
Confidence            999999999999999986 46899999999999999996    348999999999999 5  788888     9999999


Q ss_pred             H-hhhhhhcccCCCCCCCC
Q 020535          308 A-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       308 ~-~~ya~~R~~fG~pl~~~  325 (325)
                      . ++|+++|+|||+||+++
T Consensus       350 ~Av~YA~~R~QFG~pIg~f  368 (774)
T PRK13026        350 TTGAYAYVRRQFGMPIGQF  368 (774)
T ss_pred             HHHHHHHHHHhcCCCcccc
Confidence            9 99999999999999975

>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit

Probab=100.00  E-value=8.3e-49  Score=371.26  Aligned_cols=262  Identities=19%  Similarity=0.230  Sum_probs=234.0

Q ss_pred             CCCHHHHHHHHHHHHHHHhhccccHHH--HHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCC
Q 020535           54 LLTSEEQAVRMKVRECMEKEIAPIMAE--YWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDA  130 (325)
Q Consensus        54 ~l~~~~~~l~~~~~~f~~~~~~~~~~~--~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~  130 (325)
                      .++++++++++.+++|+++++.+...+  .++.+.||.++|++|.+.||+++ +|++|||.|++..+.+.++|++++.+.
T Consensus         3 ~~~~eq~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~e~G~~~l~vPe~~GG~G~~~~~~~~v~eel~~~~~   82 (378)
T TIGR03203         3 DLSEEQRLLKESVEGLLKTSYDFDSRKKYQKEKGGWSKAVWGKLAEQGLLGLPFSEADGGFGAGSVETMIVMEALGKALV   82 (378)
T ss_pred             CCCHHHHHHHHHHHHHHHhhCCHHHHHHHHhccCCCCHHHHHHHHHCCCcccccchhcCCCCCCHHHHHHHHHHHhCccc
Confidence            478999999999999999988876543  35667899999999999999999 999999999999999999999999876


Q ss_pred             cchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCC
Q 020535          131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST  210 (325)
Q Consensus       131 s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~  210 (325)
                      +.+. + .+..++..++..+|+++||++|||++++|+.++++++|||++|||+..+.|++++++|+|+|||+|.||||+.
T Consensus        83 ~~~~-~-~~~~~~~~~l~~~g~~~qk~~~L~~l~~G~~~~a~a~tEp~~gsd~~~~~t~a~~~g~~~~l~G~K~~vt~a~  160 (378)
T TIGR03203        83 LEPY-L-ATVVIGGGFLRHAGSAAQKAAHLPGIIDGSKTFAFAQLEKNSRYDLGDVSTTAKKTGDGWVIDGEKFVVLNGE  160 (378)
T ss_pred             chHH-H-HHHHHHHHHHHHcCCHHHHHHHHHHHhCCChhheeeecCCCCCCCcccceEEEEEcCCEEEEEeEEEEecCCc
Confidence            5432 2 2222445678899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEEeCC----CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhch
Q 020535          211 FADVLVIFARNTT----TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVSE  285 (325)
Q Consensus       211 ~Ad~~~v~a~~~~----~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~  285 (325)
                      .||+++|++++++    ++++++|+||++.|||++.+.+.++|+   .++++.|+||+||.++++|.. +|++.+...++
T Consensus       161 ~Ad~~lv~ar~~~~~~~~~g~~~flV~~~~~Gv~~~~~~~~~g~---~~~~l~fd~v~vp~~~~lg~~~~g~~~~~~~l~  237 (378)
T TIGR03203       161 TADTLIVTARTKGARRDRTGIGVFLVPAGAKGVTIKGYPTQDGL---HAADITFTGVVVGADAAIGDPENALPLIERVVD  237 (378)
T ss_pred             cCCEEEEEEecCCCCCCCCceEEEEEECCCCCceeccccccCCC---ceeeEEECCCcccHHhhcCCcchHHHHHHHHHH
Confidence            9999999999852    357999999999999999887777776   568999999999999999875 58999999999


Q ss_pred             hhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535          286 GEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       286 ~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~  325 (325)
                      ..|+  ++.++|     +++++++. ++|+++|+|||+||++|
T Consensus       238 ~~r~~~aa~~~G-----~a~~al~~a~~ya~~R~qFG~pi~~~  275 (378)
T TIGR03203       238 DARAALCAEAVG-----LMDESLKTTVEYIKTRKQFGVPIGSF  275 (378)
T ss_pred             HHHHHHHHHHHH-----HHHHHHHHHHHHHhcCeecCccchhh
Confidence            9998  888899     99999999 99999999999999875

Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.

>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated

Probab=100.00  E-value=1.3e-48  Score=370.60  Aligned_cols=267  Identities=22%  Similarity=0.281  Sum_probs=239.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhc-cccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHcc
Q 020535           51 FDDLLTSEEQAVRMKVRECMEKEI-APIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARV  128 (325)
Q Consensus        51 ~~~~l~~~~~~l~~~~~~f~~~~~-~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~  128 (325)
                      |++.++++++++++.+++|+++++ .+...+.++.+.||.++|++|++.||+++ +|++|||.|+++.+.+.+++++++.
T Consensus         1 m~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~la~~   80 (380)
T PRK03354          1 MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRL   80 (380)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhccCChhHHHHHhhCCCCHHHHHHHHHCCCCccCCChhhCCCCCCHHHHHHHHHHHHhc
Confidence            345589999999999999999875 56667778888999999999999999999 9999999999999999999999999


Q ss_pred             CCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccC
Q 020535          129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGN  208 (325)
Q Consensus       129 ~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~  208 (325)
                      |+++++.+.++.  +...+..+|+++||++|||++++|+.+.|+++|||..|||...+.|+++++++||+|||+|.||||
T Consensus        81 ~~s~~~~~~~~~--~~~~l~~~g~~e~~~~~l~~~~~g~~~~~~a~tE~~~gs~~~~~~t~a~~~~~g~~lnG~K~fis~  158 (380)
T PRK03354         81 GAPTYVLYQLPG--GFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKVYLNGSKCFITS  158 (380)
T ss_pred             CcchHHHHHhcc--cHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCEEEEEEeCCEEEEeeEEEEEcC
Confidence            998775544432  345778899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEEeCCC---CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhc
Q 020535          209 STFADVLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVS  284 (325)
Q Consensus       209 ~~~Ad~~~v~a~~~~~---~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l  284 (325)
                      +..||+++|+++++.+   .++++|+||++.+||++. .|+++|+|+++++++.|+||+||.++++|.+ +|+......+
T Consensus       159 ~~~ad~~~v~a~~~~~~~~~~~~~~lv~~~~~gv~~~-~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~g~g~~~~~~~~  237 (380)
T PRK03354        159 SAYTPYIVVMARDGASPDKPVYTEWFVDMSKPGIKVT-KLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEF  237 (380)
T ss_pred             CCcCCEEEEEEEcCCCCCCCceeEEEEECCCCceEec-cccccCCCCCCeEEEEEccEEecHHHcCCCCChHHHHHHHHH
Confidence            9999999999997422   357889999999999986 5899999999999999999999999999875 4787777778


Q ss_pred             hhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535          285 EGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       285 ~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~  325 (325)
                      +..|+  ++.++|     +++++++. ++|+++|++||+||+++
T Consensus       238 ~~~r~~~aa~~~G-----~a~~al~~a~~~a~~R~~fg~~i~~~  276 (380)
T PRK03354        238 DHERFLVALTNYG-----TAMCAFEDAARYANQRVQFGEAIGRF  276 (380)
T ss_pred             HHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhhccCccHHHh
Confidence            88887  778888     99999999 99999999999998763

>cd01156 IVD Isovaleryl-CoA dehydrogenase

Probab=100.00  E-value=1.2e-48  Score=370.30  Aligned_cols=266  Identities=29%  Similarity=0.433  Sum_probs=247.0

Q ss_pred             CCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcch
Q 020535           55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCS  133 (325)
Q Consensus        55 l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~~  133 (325)
                      ++++++.+++.+++|+++++.|.+.+.|+.+.+|.++|+.|++.||+++ +|++|||.|+++.+.+.++++|++.|++++
T Consensus         2 ~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~~~~   81 (376)
T cd01156           2 LDDEIEMLRQSVREFAQKEIAPLAAKIDRDNEFPRDLWRKMGKLGLLGITAPEEYGGSGMGYLAHVIIMEEISRASGSVA   81 (376)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHhCCCCcccCCHhhCCCCCCHHHHHHHHHHHhccchhHH
Confidence            4688999999999999999999988888888899999999999999999 999999999999999999999999999998


Q ss_pred             hHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCCCCC
Q 020535          134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFAD  213 (325)
Q Consensus       134 ~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~~Ad  213 (325)
                      +.+..|..++...|..+|+++|+++|++++++|++++++++|||.+|||+..+.++|+++++||+|||+|.|+||+..||
T Consensus        82 ~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~sEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~  161 (376)
T cd01156          82 LSYGAHSNLCINQIYRNGSAAQKEKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRAEKKGDRYVLNGSKMWITNGPDAD  161 (376)
T ss_pred             HHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhCeEEEEEeCCEEEEEEEEEEecCCCcCC
Confidence            76666765556678999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEeCCC---CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhchhhhH
Q 020535          214 VLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVSEGEET  289 (325)
Q Consensus       214 ~~~v~a~~~~~---~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~~~r~  289 (325)
                      +++|+++++++   .++++|+||++.|||++.+.|+++|+++++++++.|+||+||+++++|.. .|+..+...++..|+
T Consensus       162 ~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~  241 (376)
T cd01156         162 TLVVYAKTDPSAGAHGITAFIVEKGMPGFSRAQKLDKLGMRGSNTCELVFEDCEVPEENILGGENKGVYVLMSGLDYERL  241 (376)
T ss_pred             EEEEEEEeCCCCCCCceEEEEEcCCCCCeecCCccccccCCCCCceEEEeCceEecHHHcCCCCCchHHHHHHHHhhHHH
Confidence            99999997632   46899999999999999999999999999999999999999999999874 488888888999988


Q ss_pred             --HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535          290 --VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       290 --aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~  325 (325)
                        ++.++|     +++++++. ++|+++|++||+||+++
T Consensus       242 ~~aa~~lG-----~a~~al~~~~~~~~~R~~~g~~i~~~  275 (376)
T cd01156         242 VLAGGPIG-----IMQAALDVAIPYAHQRKQFGQPIGEF  275 (376)
T ss_pred             HHHHHHHH-----HHHHHHHHHHHHHHHhHhcCcchHHh
Confidence              888888     99999999 99999999999999763

Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.

>PRK12341 putative acyl-CoA dehydrogenase; Provisional

Probab=100.00  E-value=1.6e-48  Score=370.14  Aligned_cols=266  Identities=21%  Similarity=0.284  Sum_probs=239.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhcc-ccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHcc
Q 020535           51 FDDLLTSEEQAVRMKVRECMEKEIA-PIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARV  128 (325)
Q Consensus        51 ~~~~l~~~~~~l~~~~~~f~~~~~~-~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~  128 (325)
                      |++.++++++.+++.+++|+.+.+. +.+.++|+.+.+|.++|++|++.||+++ +|++|||.|++..+.+.++|++++.
T Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e~la~~   80 (381)
T PRK12341          1 MDFSLTEEQELLLASIRELITRNFPEEYFRTCDENGTYPREFMRALADNGISMLGVPEEFGGTPADYVTQMLVLEEVSKC   80 (381)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhcCchhHHHHHHhCCCCHHHHHHHHHCCCCCcCCChhhCCCCcCHHHHHHHHHHHhhc
Confidence            3456889999999999999999886 4667778888999999999999999999 9999999999999999999999999


Q ss_pred             CCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhh-hcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeeccc
Q 020535          129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSL-AQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIG  207 (325)
Q Consensus       129 ~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l-~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it  207 (325)
                      |.+. +.+  ++.++...+..+|+++||++|++++ .+|+.++++++|||+.|||+..+.++|+++++||+|||+|.|||
T Consensus        81 ~~~~-~~~--~~~~~~~~l~~~g~~~q~~~~l~~~~~~g~~~~~~a~tEp~~gsd~~~~~t~a~~~~gg~~lnG~K~~is  157 (381)
T PRK12341         81 GAPA-FLI--TNGQCIHSMRRFGSAEQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVYLNGQKTFIT  157 (381)
T ss_pred             ChhH-HHH--hhhhhHHHHHHhCCHHHHHHHhHHHhhCCCeEEEEEecCCCCCCchhhCeeEEEEeCCEEEEEeEEEEEc
Confidence            9873 322  3334556678899999999999998 59998899999999999999999999999999999999999999


Q ss_pred             CCCCCCEEEEEEEeCCC----CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCCC-ChHHHHh
Q 020535          208 NSTFADVLVIFARNTTT----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVN-SFQDTSK  282 (325)
Q Consensus       208 ~~~~Ad~~~v~a~~~~~----~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~~-g~~~~~~  282 (325)
                      |+..||+++|+++++++    .++++|+||++.|||++. .|+++|+++++++.++|+||+||.+++||..+ |+.....
T Consensus       158 ~~~~Ad~~~v~a~~~~~~~~~~~~~~~lV~~~~~gv~~~-~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~  236 (381)
T PRK12341        158 GAKEYPYMLVLARDPQPKDPKKAFTLWWVDSSKPGIKIN-PLHKIGWHMLSTCEVYLDNVEVEESDLVGEEGMGFLNVMY  236 (381)
T ss_pred             CCccCCEEEEEEEcCCCCCCCCceEEEEEeCCCCceeec-ccccccCCCCCceEEEECcEEecHHHcCCCCChHHHHHHH
Confidence            99999999999998532    368999999999999995 58999999999999999999999999999754 8888778


Q ss_pred             hchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535          283 VSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       283 ~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~  325 (325)
                      .++..|+  ++.++|     +++++++. ++|+++|++||+||+++
T Consensus       237 ~~~~~r~~~aa~~lG-----~a~~al~~~~~~~~~R~~~g~~i~~~  277 (381)
T PRK12341        237 NFEMERLINAARSLG-----FAECAFEDAARYANQRIQFGKPIGHN  277 (381)
T ss_pred             HHHhHHHHHHHHHHH-----HHHHHHHHHHHHHHhhhCCCccHHHh
Confidence            8888888  888899     99999999 99999999999998763

>PLN02519 isovaleryl-CoA dehydrogenase

Probab=100.00  E-value=1.8e-48  Score=372.23  Aligned_cols=267  Identities=25%  Similarity=0.422  Sum_probs=247.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChh--HHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccC
Q 020535           53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFH--VIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVD  129 (325)
Q Consensus        53 ~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~--~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~  129 (325)
                      +.+++++.++++.+++|+++++.|.+.+.|+.+.+|.+  +|++|++.||+++ +|++|||.|+++.+.+.++|++++.+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~~~p~~~~~~~~l~~~G~~~~~vP~e~GG~g~~~~~~~~v~e~la~~~  103 (404)
T PLN02519         24 LLFDDTQLQFKESVQQFAQENIAPHAAAIDATNSFPKDVNLWKLMGDFNLHGITAPEEYGGLGLGYLYHCIAMEEISRAS  103 (404)
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCCcchHHHHhcCCCCchHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHhhhc
Confidence            34789999999999999999999999888888888876  6999999999999 99999999999999999999999999


Q ss_pred             CcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCC
Q 020535          130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS  209 (325)
Q Consensus       130 ~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~  209 (325)
                      .++++.+.+|...+...|..+|+++||++|+|.+.+|+.++|+++|||.+|||...+.|++++++|||+|||+|.|+||+
T Consensus       104 ~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~sEp~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~a  183 (404)
T PLN02519        104 GSVGLSYGAHSNLCINQLVRNGTPAQKEKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAERVDGGYVLNGNKMWCTNG  183 (404)
T ss_pred             ccHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCcCCCcccceEEEEEeCCEEEEEeEEEeecCC
Confidence            99988777776655668889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEEEeCC---CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhch
Q 020535          210 TFADVLVIFARNTT---TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVSE  285 (325)
Q Consensus       210 ~~Ad~~~v~a~~~~---~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~  285 (325)
                      ..||+++|.+++++   +.++++|+||++.|||++.+.|+++|+++++++++.|+||+||+++++|.. .|+......++
T Consensus       184 ~~ad~~~v~a~~~~~~~~~~~~~~lVp~~~~Gv~~~~~~~~~G~rgt~s~~v~f~~v~Vp~~~~lg~~~~G~~~~~~~~~  263 (404)
T PLN02519        184 PVAQTLVVYAKTDVAAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGQEGKGVYVMMSGLD  263 (404)
T ss_pred             CcCCEEEEEEEeCCCCCCCeeEEEEEeCCCCCeeccCcccccCCCCCCeeEEEeCeEEecHHHcCCCCCccHHHHHHHHH
Confidence            99999999999753   246899999999999999999999999999999999999999999999874 48887888888


Q ss_pred             hhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCC
Q 020535          286 GEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQI  324 (325)
Q Consensus       286 ~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~  324 (325)
                      ..|+  ++.++|     +++++++. ++|+++|.+||+||++
T Consensus       264 ~~r~~~aa~~lG-----~a~~al~~a~~~a~~R~~~g~pl~~  300 (404)
T PLN02519        264 LERLVLAAGPLG-----LMQACLDVVLPYVRQREQFGRPIGE  300 (404)
T ss_pred             HHHHHHHHHHHH-----HHHHHHHHHHHHHHhceeCCccHHH
Confidence            8887  778888     99999999 9999999999999875

>cd01162 IBD Isobutyryl-CoA dehydrogenase

Probab=100.00  E-value=2.1e-48  Score=368.50  Aligned_cols=265  Identities=28%  Similarity=0.449  Sum_probs=246.2

Q ss_pred             CCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcch
Q 020535           55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCS  133 (325)
Q Consensus        55 l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~~  133 (325)
                      ++++++++++.+++|+++++.|.+.++|..+.+|.++|+.|++.||+++ +|++|||.|.+..+.+.+++++++.|++++
T Consensus         1 ~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~l~~~~~~~~   80 (375)
T cd01162           1 LNEEQRAIQEVARAFAAKEMAPHAADWDQKKHFPVDVLRKAAELGFGGIYIRDDVGGSGLSRLDASIIFEALSTGCVSTA   80 (375)
T ss_pred             CCHHHHHHHHHHHHHHHHhCCcchhhHHhhCCCCHHHHHHHHHCCCCCcCCCHhhCCCCCCHHHHHHHHHHHHhhchhHH
Confidence            4688999999999999999999988888889999999999999999999 999999999999999999999999999988


Q ss_pred             hHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCCCCC
Q 020535          134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFAD  213 (325)
Q Consensus       134 ~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~~Ad  213 (325)
                      +++.+|. ++...+..+|+++|+++|+|++.+|+.++++++|||.+|||...+.++++++++||+|||+|.||||+..||
T Consensus        81 ~~~~~~~-~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad  159 (375)
T cd01162          81 AYISIHN-MCAWMIDSFGNDEQRERFLPDLCTMEKLASYCLTEPGSGSDAAALRTRAVREGDHYVLNGSKAFISGAGDSD  159 (375)
T ss_pred             HHHHHhh-hHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCCCCChhhCEEEEEEeCCEEEEEEEEEEecCCCCCC
Confidence            7776665 455678889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEeCC--CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhchhhhH-
Q 020535          214 VLVIFARNTT--TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVSEGEET-  289 (325)
Q Consensus       214 ~~~v~a~~~~--~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~~~r~-  289 (325)
                      +++|++++++  ..++++|+||++.|||++.+.|+++|+++++++++.|+||+||.++++|.. .|++.....++..|+ 
T Consensus       160 ~~~v~a~~~~~~~~~~~~~lv~~~~~gv~v~~~~~~~g~~~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~  239 (375)
T cd01162         160 VYVVMARTGGEGPKGISCFVVEKGTPGLSFGANEKKMGWNAQPTRAVIFEDCRVPVENRLGGEGQGFGIAMAGLNGGRLN  239 (375)
T ss_pred             EEEEEEEecCCCCCceEEEEEeCCCCCeecCCcccccCCCCCCeeEEEECceEecHHHcCCCCCchHHHHHHHHHHHHHH
Confidence            9999999753  246889999999999999999999999999999999999999999999875 488888888888888 


Q ss_pred             -HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535          290 -VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       290 -aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~  325 (325)
                       ++.++|     +++++++. ++|+++|+|||+||+++
T Consensus       240 ~aa~~lG-----~a~~al~~~~~~a~~R~~fg~~l~~~  272 (375)
T cd01162         240 IASCSLG-----AAQAALDLARAYLEERKQFGKPLADF  272 (375)
T ss_pred             HHHHHHH-----HHHHHHHHHHHHHHhhhccCccHHhh
Confidence             888889     99999999 99999999999999864

Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.

>cd01157 MCAD Medium chain acyl-CoA dehydrogenase

Probab=100.00  E-value=1.9e-48  Score=369.19  Aligned_cols=265  Identities=25%  Similarity=0.402  Sum_probs=242.3

Q ss_pred             CCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcch
Q 020535           55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCS  133 (325)
Q Consensus        55 l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~~  133 (325)
                      ++++++++++.+++|+++++.|.+.++|+.+.+|.++|++|.+.||+++ +|++|||.|++..+.+.++|++++.|++++
T Consensus         1 ~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~v~e~l~~~~~~~~   80 (378)
T cd01157           1 LTEQQKEFQETARKFAREEIIPVAAEYDKSGEYPWPLIKRAWELGLMNTHIPEDCGGLGLGTFDTCLITEELAYGCTGVQ   80 (378)
T ss_pred             CCHHHHHHHHHHHHHHHHhcccchHHHHhhCCCCHHHHHHHHhCCCCCcCCChhhCCCCCCHHHHHHHHHHHHhhhhHHH
Confidence            4678999999999999999999998888888999999999999999999 999999999999999999999999998876


Q ss_pred             hHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCCCCC
Q 020535          134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFAD  213 (325)
Q Consensus       134 ~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~~Ad  213 (325)
                      +.+..+ .++...+..+|+++||++||+.+.+|+.++++++|||..|||...+.|++++++|||+|||+|.|+||+..||
T Consensus        81 ~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad  159 (378)
T cd01157          81 TAIEAN-SLGQMPVIISGNDEQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKAN  159 (378)
T ss_pred             HHHHhh-hhhHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhcCeEEEEEcCCEEEEeeEEEeecCCccCC
Confidence            554443 3445566778999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEeCCC------CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhchh
Q 020535          214 VLVIFARNTTT------NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVSEG  286 (325)
Q Consensus       214 ~~~v~a~~~~~------~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~~  286 (325)
                      +++|+++++++      .++++|+||+++|||++.+.|+++|+++++++++.|+||+||.+++++.. .|+..+...++.
T Consensus       160 ~~lv~a~~~~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~s~~~~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~  239 (378)
T cd01157         160 WYFLLARSDPDPKCPASKAFTGFIVEADTPGIQPGRKELNMGQRCSDTRGITFEDVRVPKENVLIGEGAGFKIAMGAFDK  239 (378)
T ss_pred             EEEEEEEeCCcccCCCCCceEEEEEcCCCCCeeccCcccccCCCCCCceEEEeccEEECHHHcCCCCCchHHHHHHHHhh
Confidence            99999997532      35889999999999999999999999999999999999999999999875 488888888888


Q ss_pred             hhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535          287 EET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       287 ~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~  325 (325)
                      .|+  ++.++|     +++++++. ++|+++|+|||+||+++
T Consensus       240 ~r~~~aa~~lG-----~a~~~l~~~~~~~~~R~~fg~~i~~~  276 (378)
T cd01157         240 TRPPVAAGAVG-----LAQRALDEATKYALERKTFGKLIAEH  276 (378)
T ss_pred             hHHHHHHHHHH-----HHHHHHHHHHHHHHhccccCccHHHh
Confidence            887  888888     99999999 99999999999999764

MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.

>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase

Probab=100.00  E-value=2.5e-48  Score=367.60  Aligned_cols=264  Identities=26%  Similarity=0.320  Sum_probs=241.7

Q ss_pred             CCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcch
Q 020535           55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCS  133 (325)
Q Consensus        55 l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~~  133 (325)
                      ++++++++++.+++|+++++.|.+.+.|+.+.+|.++|++|.+.||+++ +|++|||.|++..+.+.++|++++.+++++
T Consensus         1 ~t~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~   80 (372)
T TIGR03207         1 LNEDLQALADTARRFARERIAPGFKERDKTRVLDRELMRDMGEMGFIGPELPEEHGGLGMGCLAAGVIHEQIARADLSMS   80 (372)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHHCCCCcccCChhHCCCCCCHHHHHHHHHHHHhhCccHH
Confidence            4678899999999999999999998888888999999999999999999 999999999999999999999999999988


Q ss_pred             hHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCCCCC
Q 020535          134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFAD  213 (325)
Q Consensus       134 ~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~~Ad  213 (325)
                      ++...+ .+++..+..+|+++|+++||+++++|+.++++++|||..|||+.++.++|++++|||+|||+|.||||+..||
T Consensus        81 ~~~~~~-~~~~~~l~~~g~~~~~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~lnG~k~~vs~~~~ad  159 (372)
T TIGR03207        81 YVNLLA-SLNGQILAQHARPEIAKPWLGQLIAGEALFAIALTEPRGGSDAARLRLRAERDGDDYVLNGEKTSISAADQAD  159 (372)
T ss_pred             HHHHhh-hHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCcChhhCEEEEEEeCCEEEEEEEEEEEcCCCcCC
Confidence            654333 3455678889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEeCC----CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhchhhh
Q 020535          214 VLVIFARNTT----TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVSEGEE  288 (325)
Q Consensus       214 ~~~v~a~~~~----~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~~~r  288 (325)
                      +++|++++++    ..++++|+||++.|||++. .|+++|+++++++++.|+||+||.+++++.. .|+......++..|
T Consensus       160 ~~lv~a~~~~~~~~~~~~~~~lVp~~~~gv~~~-~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r  238 (372)
T TIGR03207       160 AAVVFARTGSEAEGARGISAFLVPMDLPGITRN-RFDCHGQRAIGRGSIFFENVRVPADHMLGNEGQGFVQVMQGFDFSR  238 (372)
T ss_pred             EEEEEEEcCCCCCCCCceEEEEEcCCCCCeecC-cchhccCCCCCeeEEEECceeccHHHcCCCCChhHHHHHHHHHHHH
Confidence            9999999852    2368899999999999975 6899999999999999999999999999875 48888888899999


Q ss_pred             H--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535          289 T--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       289 ~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~  325 (325)
                      +  ++.++|     +++++++. ++|+++|+|||+||+++
T Consensus       239 ~~~a~~~~G-----~a~~al~~a~~~~~~R~~fg~~i~~~  273 (372)
T TIGR03207       239 ALIGLQVLA-----VARAALDETWRYVAERQAFGKPLSAF  273 (372)
T ss_pred             HHHHHHHHH-----HHHHHHHHHHHHHHhccccCCchhhh
Confidence            8  778888     99999999 99999999999999764

Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.

>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase

Probab=100.00  E-value=2.3e-48  Score=372.17  Aligned_cols=286  Identities=25%  Similarity=0.366  Sum_probs=252.2

Q ss_pred             hhhcccCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHH
Q 020535           17 RSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLG   96 (325)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~   96 (325)
                      ++.|+|....+..+.||.             |++  ..++++++++++.+++|+++++.|.  ++++.+.+|.++|++|+
T Consensus         4 ~~~~~~~~~~~~~~~~~~-------------~~~--~~~~~~~~~l~~~~~~~~~~~~~~~--~~d~~~~~~~~~~~~l~   66 (409)
T cd01161           4 LNMFLGDIVTKQVFPYPS-------------VLT--EEQTEELNMLVGPVEKFFEEVNDPA--KNDQLEKIPRKTLTQLK   66 (409)
T ss_pred             hHhhcCCcchhhcCCCcc-------------ccC--ccCCHHHHHHHHHHHHHHHHhCCch--hhccccCCCHHHHHHHH
Confidence            456777777666664442             333  3478999999999999999999886  34567789999999999


Q ss_pred             hCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEec
Q 020535           97 ALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALT  175 (325)
Q Consensus        97 ~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~t  175 (325)
                      +.||+++ +|++|||.|++..+++.++|++++ |+++++.+.+|..++...+..+|+++|+++|++++++|+.++|+++|
T Consensus        67 ~~Gl~~l~vP~~~GG~g~~~~~~~~v~e~l~~-~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~t  145 (409)
T cd01161          67 ELGLFGLQVPEEYGGLGLNNTQYARLAEIVGM-DLGFSVTLGAHQSIGFKGILLFGTEAQKEKYLPKLASGEWIAAFALT  145 (409)
T ss_pred             hCCCCCCCCChhhCCCCCCHHHHHHHHHHHhh-ChHHHHHHHHhhhhhHHHHHHcCCHHHHHHHhHHHhCCCeeEEEEec
Confidence            9999999 999999999999999999999999 98888777677655555678899999999999999999999999999


Q ss_pred             CCCCCCCCCCCceEEEEe--CCEEEEEeEeecccCCCCCCEEEEEEEeCC-------CCCeEEEEEeCCCCCeEEeccCC
Q 020535          176 EPAYGSDASALNTTATKV--EGGWILEGQKRWIGNSTFADVLVIFARNTT-------TNQINGYLVKKDAPGLTVTKIEN  246 (325)
Q Consensus       176 Ep~~Gsd~~~~~~~a~~~--~~g~~lnG~K~~it~~~~Ad~~~v~a~~~~-------~~~~~~~lv~~~~~Gv~~~~~~~  246 (325)
                      ||++|||...+.++|+++  ++||+|||+|.||||+..||+++|.++++.       ++++++|+||++.|||++.+.|+
T Consensus       146 Ep~~Gs~~~~~~t~a~~~~~g~g~~l~G~K~~vs~~~~Ad~~lv~ar~~~~~~~g~~~~~~~~flvp~~~~gv~~~~~~~  225 (409)
T cd01161         146 EPSSGSDAASIRTTAVLSEDGKHYVLNGSKIWITNGGIADIFTVFAKTEVKDATGSVKDKITAFIVERSFGGVTNGPPEK  225 (409)
T ss_pred             CCCCCCChhhCeeEEEEcCCCCEEEEEeEEEeecCCCcCCEEEEEEEcCCCCCCCCCCCceEEEEEeCCCCCcccCCccc
Confidence            999999999999999985  457999999999999999999999999751       14688999999999999999999


Q ss_pred             ccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCC
Q 020535          247 KIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPL  322 (325)
Q Consensus       247 ~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl  322 (325)
                      ++|+++++++++.|+||+||.+++||.. .|+......++..|+  ++.++|     +++++++. ++|+++|++||+||
T Consensus       226 ~~G~~g~~s~~v~~~~v~Vp~~~~lg~~g~g~~~~~~~l~~~r~~~aa~~lG-----~a~~al~~a~~~a~~R~~fg~~l  300 (409)
T cd01161         226 KMGIKGSNTAEVYFEDVKIPVENVLGEVGDGFKVAMNILNNGRFGMGAALIG-----TMKRCIEKAVDYANNRKQFGKKI  300 (409)
T ss_pred             ccCCCCCCceEEEeccEEECHHHcCCCCChHHHHHHHHHHhHHHHHHHHHHH-----HHHHHHHHHHHHHHhceeCCccH
Confidence            9999999999999999999999999875 478888889999998  778888     99999999 99999999999998


Q ss_pred             CCC
Q 020535          323 QII  325 (325)
Q Consensus       323 ~~~  325 (325)
                      +++
T Consensus       301 ~~~  303 (409)
T cd01161         301 HEF  303 (409)
T ss_pred             HHh
Confidence            763

VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.

>cd01160 LCAD Long chain acyl-CoA dehydrogenase

Probab=100.00  E-value=3.4e-48  Score=366.63  Aligned_cols=262  Identities=28%  Similarity=0.402  Sum_probs=240.8

Q ss_pred             HHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHH
Q 020535           58 EEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFI  136 (325)
Q Consensus        58 ~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~~~~~  136 (325)
                      +++++++.+++|+.+++.|.+.++|+.+.+|+++|++|++.||+++ +|++|||.|+++.+.+.++|++++.+.+ ++.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~~~e~la~~~~~-~~~~   80 (372)
T cd01160           2 EHDAFRDVVRRFFAKEVAPFHHEWEKAGEVPREVWRKAGEQGLLGVGFPEEYGGIGGDLLSAAVLWEELARAGGS-GPGL   80 (372)
T ss_pred             hHHHHHHHHHHHHHHhCchhHHHHHhhCCCCHHHHHHHHhCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHhcch-HHHH
Confidence            5778999999999999999988888888999999999999999999 9999999999999999999999996554 5556


Q ss_pred             HHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCCCCCEEE
Q 020535          137 LVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLV  216 (325)
Q Consensus       137 ~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~~Ad~~~  216 (325)
                      .+|..++..++..+|+++|+++|+|++.+|+.++|+++|||.+|||+..+.|+++++++||+|||+|.||||+..||+++
T Consensus        81 ~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~Ad~~~  160 (372)
T cd01160          81 SLHTDIVSPYITRAGSPEQKERVLPQMVAGKKIGAIAMTEPGAGSDLQGIRTTARKDGDHYVLNGSKTFITNGMLADVVI  160 (372)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCeEEEEEeCCEEEEeeEEEEecCCCccCEEE
Confidence            66655566788899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCC----CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCCC-ChHHHHhhchhhhH--
Q 020535          217 IFARNTTT----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVN-SFQDTSKVSEGEET--  289 (325)
Q Consensus       217 v~a~~~~~----~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~~-g~~~~~~~l~~~r~--  289 (325)
                      |.++++++    +++++|+||++.||+++.+.|+++|++++++++++|+||+||.+++||..+ |+......++..|+  
T Consensus       161 v~a~~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~~~~~  240 (372)
T cd01160         161 VVARTGGEARGAGGISLFLVERGTPGFSRGRKLKKMGWKAQDTAELFFDDCRVPAENLLGEENKGFYYLMQNLPQERLLI  240 (372)
T ss_pred             EEEEeCCCCCCCCceEEEEEeCCCCCeecCCccccccCCCCCeEEEEecceEccHHHcCCCCCchHHHHHHHHHHHHHHH
Confidence            99998532    468999999999999999999999999999999999999999999999854 88888888888887  


Q ss_pred             HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535          290 VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       290 aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~  325 (325)
                      ++.++|     +++++++. ++|+++|+|||+||+++
T Consensus       241 aa~~lG-----~a~~al~~a~~~a~~R~~~g~~i~~~  272 (372)
T cd01160         241 AAGALA-----AAEFMLEETRNYVKQRKAFGKTLAQL  272 (372)
T ss_pred             HHHHHH-----HHHHHHHHHHHHHHhhhccCccHHhh
Confidence            788889     99999999 99999999999998763

LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.

>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional

Probab=100.00  E-value=3.8e-48  Score=370.74  Aligned_cols=265  Identities=25%  Similarity=0.351  Sum_probs=244.7

Q ss_pred             CCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcc
Q 020535           54 LLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASC  132 (325)
Q Consensus        54 ~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~  132 (325)
                      .++++++++++.+++|+.+++.|.+.+.|+.+.+|.++|+.|++.||+++ +|++|||.|+++.+.+.++|++++.++++
T Consensus        36 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~  115 (410)
T PTZ00461         36 NPTPEHAALRETVAKFSREVVDKHAREDDINMHFNRDLFKQLGDLGVMGVTVPEADGGAGMDAVAAVIIHHELSKYDPGF  115 (410)
T ss_pred             CCCHHHHHHHHHHHHHHHHhCCccHHHHhhhCCCCHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHHhhCchH
Confidence            58899999999999999999999998888888999999999999999999 99999999999999999999999999887


Q ss_pred             hhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCC-EEEEEeEeecccCCCC
Q 020535          133 STFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEG-GWILEGQKRWIGNSTF  211 (325)
Q Consensus       133 ~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~-g~~lnG~K~~it~~~~  211 (325)
                      ++.+..|..+....+..+|+++||++|+|++++|+.++|+++|||.+|||+..+.|+++++++ ||+|||+|.||||+..
T Consensus       116 ~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~gg~~L~G~K~~vs~a~~  195 (410)
T PTZ00461        116 CLAYLAHSMLFVNNFYYSASPAQRARWLPKVLTGEHVGAMGMSEPGAGTDVLGMRTTAKKDSNGNYVLNGSKIWITNGTV  195 (410)
T ss_pred             HHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChHHCeEEEEEcCCCeEEEEeEEEeECCCcc
Confidence            765556654555677889999999999999999999999999999999999999999999865 6999999999999999


Q ss_pred             CCEEEEEEEeCCCCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhchhhhH-
Q 020535          212 ADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVSEGEET-  289 (325)
Q Consensus       212 Ad~~~v~a~~~~~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~~~r~-  289 (325)
                      ||+++|.+++++  ++++|+||++.|||++.+.|+++|+++++++++.|+||+||++++||.+ .|+......++..|+ 
T Consensus       196 Ad~~lv~a~~~~--~~~~flVp~~~~Gv~v~~~~~~~G~r~~~~~~l~f~~v~Vp~~~~lg~~g~g~~~~~~~~~~~r~~  273 (410)
T PTZ00461        196 ADVFLIYAKVDG--KITAFVVERGTKGFTQGPKIDKCGMRASHMCQLFFEDVVVPAENLLGEEGKGMVGMMRNLELERVT  273 (410)
T ss_pred             CCEEEEEEEeCC--ceEEEEEeCCCCCeecCCCCcccCCCCCceEEEEEcceecCHHHhCCCCCccHHHHHHHHHHHHHH
Confidence            999999999753  5899999999999999999999999999999999999999999999975 488888888888888 


Q ss_pred             -HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535          290 -VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       290 -aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~  325 (325)
                       ++.++|     +++++++. ++|+++|+|||+||+++
T Consensus       274 ~aa~~~G-----~a~~al~~a~~ya~~R~~fg~~i~~~  306 (410)
T PTZ00461        274 LAAMAVG-----IAERSVELMTSYASERKAFGKPISNF  306 (410)
T ss_pred             HHHHHHH-----HHHHHHHHHHHHHHhCeecCcCHHhh
Confidence             888889     99999999 99999999999999864

>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit

Probab=100.00  E-value=4.4e-46  Score=354.69  Aligned_cols=264  Identities=23%  Similarity=0.265  Sum_probs=231.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhccccHHHHH-HhCCCCh----hHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHH
Q 020535           53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYW-EKAEFPF----HVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIA  126 (325)
Q Consensus        53 ~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d-~~~~~p~----~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la  126 (325)
                      +.++++++++++.+++|+.+++.|...+.+ +...+|.    ++|++|.+.||+++ +|++|||.|+++.+.+.++|+++
T Consensus         2 ~~lteeq~~l~~~~r~f~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~e~G~~gl~vPe~~GG~G~~~~~~~~v~eelg   81 (395)
T TIGR03204         2 LAFSKEEQAFRDEVRSFFKDNVPADTRQKLVEGRHLTKDEMVTWWRILNKKGWGVSHWPKQYGGTGWTSVQHYIFNEELQ   81 (395)
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCChhhhhhhhccCCCChHHHHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHHHHHHH
Confidence            347899999999999999999988765532 3334664    89999999999999 99999999999999999999999


Q ss_pred             ccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecc
Q 020535          127 RVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWI  206 (325)
Q Consensus       127 ~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~i  206 (325)
                      +.+.+.++...++  ++...|..+|+++||++|||++++|+.+.++++|||++|||+..+.|+++++++||+|||+|.||
T Consensus        82 ~~~~~~~~~~~~~--~~~~~l~~~g~~~q~~~~L~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~g~~~~LnG~K~~v  159 (395)
T TIGR03204        82 SAPAPQPLAFGVS--MVGPVIYTFGNEEQKKRFLPRIANVDDWWCQGFSEPGSGSDLASLKTKAEKKGDKWIINGQKTWT  159 (395)
T ss_pred             hcCCCccchhHhH--hhHHHHHHhCCHHHHHHHHHHHhCCchheEeEecCCCCCCChhhceEEEEEcCCEEEEeeEEEee
Confidence            9998877543322  33457888999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCEEEEEEEeCC----CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHH
Q 020535          207 GNSTFADVLVIFARNTT----TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTS  281 (325)
Q Consensus       207 t~~~~Ad~~~v~a~~~~----~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~  281 (325)
                      +|+..||+++|.+++++    +.++++|+||++.|||++.+.....|  +.+++++.|+||+||.+++||.. .|+....
T Consensus       160 t~a~~Ad~~lv~a~~~~~~~~~~g~~~flV~~~~~Gv~~~~~~~~~~--~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~  237 (395)
T TIGR03204       160 TLAQHADWIFCLCRTDPTAKKQMGISFILVDMKSKGITVRPIQTIDG--GVEVNEVFFDDVEVPYENLVGEENKGWDYAK  237 (395)
T ss_pred             cCCccCCeEEEEEEeCCCCCCCCCeEEEEEeCCCCCeEecChhhccC--CCceeEEEEcceEEcHHHcCCCCCchHHHHH
Confidence            99999999999999753    24689999999999999987666654  66899999999999999999874 5899999


Q ss_pred             hhchhhhHHHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535          282 KVSEGEETVWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       282 ~~l~~~r~aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~  325 (325)
                      ..++..|+...++|     +++++++. ++|+++|+|||+||+++
T Consensus       238 ~~l~~~r~g~aa~g-----~a~~~l~~a~~ya~~R~~fg~~i~~~  277 (395)
T TIGR03204       238 FLLGNERTGIARVG-----VSKERIRRIKDLAAKVESGGKPVIED  277 (395)
T ss_pred             HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhcCCccccC
Confidence            99999998333378     99999999 99999999999999875

Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.

>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases

Probab=100.00  E-value=4.6e-46  Score=352.10  Aligned_cols=263  Identities=38%  Similarity=0.568  Sum_probs=244.1

Q ss_pred             HHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHH
Q 020535           58 EEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFI  136 (325)
Q Consensus        58 ~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~~~~~  136 (325)
                      +++++++.+++|+.+++.+.+.+.|+.+.+|.++|+.|++.||+++ +|++|||.|.++.+.+.+++++++.|+++++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~e~GG~g~~~~~~~~v~~~l~~~~~s~~~~~   81 (373)
T cd01158           2 EHQMIRKTVRDFAEKEIAPLAAEMDEKGEFPREVIKEMAELGLMGIPIPEEYGGAGLDFLAYAIAIEELAKVDASVAVIV   81 (373)
T ss_pred             hHHHHHHHHHHHHHHhcccchHHHhhcCCCCHHHHHHHHhCCCCcccCCHHHCCCCCCHHHHHHHHHHHHhhCccHHHHH
Confidence            5788999999999999999888888888899999999999999999 999999999999999999999999999999887


Q ss_pred             HHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCCCCCEEE
Q 020535          137 LVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLV  216 (325)
Q Consensus       137 ~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~~Ad~~~  216 (325)
                      .+|..++..++..+|+++|+++|++++.+|+.++++++|||.+|||+..+.++++++++||+|||+|.|+||+..||+++
T Consensus        82 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~G~~~~~~a~se~~~gs~~~~~~~~a~~~~~g~~l~G~k~~vsg~~~ad~~l  161 (373)
T cd01158          82 SVHNSLGANPIIKFGTEEQKKKYLPPLATGEKIGAFALSEPGAGSDAAALKTTAKKDGDDYVLNGSKMWITNGGEADFYI  161 (373)
T ss_pred             HHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCHHHCEeEEEEeCCEEEEeeEEEEEcCCCcCCEEE
Confidence            77775666788899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCC---CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCCC-ChHHHHhhchhhhH--H
Q 020535          217 IFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVN-SFQDTSKVSEGEET--V  290 (325)
Q Consensus       217 v~a~~~~~---~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~~-g~~~~~~~l~~~r~--a  290 (325)
                      |.++++++   .++++|+||++.|||++.+.|+++|+++++++++.|+||+||.+++++..+ |+......++..|+  +
T Consensus       162 v~a~~~~~~~~~~~~~~lvp~~~~gv~i~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~~  241 (373)
T cd01158         162 VFAVTDPSKGYRGITAFIVERDTPGLSVGKKEDKLGIRGSSTTELIFEDVRVPKENILGEEGEGFKIAMQTLDGGRIGIA  241 (373)
T ss_pred             EEEEcCCCCCCCceEEEEEcCCCCCeecCCcccccccCCCCceEEEeCcEEecHHHcCCCCCchHHHHHHHHHHHHHHHH
Confidence            99997532   458899999999999999999999999999999999999999999998754 88888888888888  8


Q ss_pred             HhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535          291 WSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       291 a~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~  325 (325)
                      +.++|     +++++++. ++|+++|++||+||+++
T Consensus       242 a~~lG-----~a~~~l~~~~~~~~~R~~~g~~~~~~  272 (373)
T cd01158         242 AQALG-----IAQAALDAAVDYAKERKQFGKPIADF  272 (373)
T ss_pred             HHHHH-----HHHHHHHHHHHHHHhCcccCCcHHHh
Confidence            88889     99999999 99999999999998753

Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.

>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2

Probab=100.00  E-value=2.6e-45  Score=349.54  Aligned_cols=262  Identities=21%  Similarity=0.231  Sum_probs=227.3

Q ss_pred             HHHHHHHHHHHHHhhccccHHHHHHhC-------CCC----hhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHH
Q 020535           59 EQAVRMKVRECMEKEIAPIMAEYWEKA-------EFP----FHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIA  126 (325)
Q Consensus        59 ~~~l~~~~~~f~~~~~~~~~~~~d~~~-------~~p----~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la  126 (325)
                      .+++++.+++|+++++.|...++++..       .+|    +++|+.+++.||+++ +|++|||.|+++.+.+.++|+++
T Consensus         3 ~~~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~P~~~GG~g~~~~~~~~v~e~l~   82 (394)
T cd01155           3 AQELRARVKAFMEEHVYPAEQEFLEYYAEGGDRWWTPPPIIEKLKAKAKAEGLWNLFLPEVSGLSGLTNLEYAYLAEETG   82 (394)
T ss_pred             HHHHHHHHHHHHHHhcCccHHHHHhhcccccccccCCchhHHHHHHHHHhCCCCCCCCChhhCCCCcCHHHHHHHHHHHh
Confidence            568999999999999999887776431       134    588999999999999 99999999999999999999999


Q ss_pred             ccCCc-chhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCC-CCCCCCCCceEEEEeCCEEEEEeEee
Q 020535          127 RVDAS-CSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPA-YGSDASALNTTATKVEGGWILEGQKR  204 (325)
Q Consensus       127 ~~~~s-~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~-~Gsd~~~~~~~a~~~~~g~~lnG~K~  204 (325)
                      +.+.. .++....+...+..+|..+|+++|+++|+|++++|+.++++++|||+ .|||...+.|+++++++||+|||+|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tE~~~~gsd~~~~~t~a~~~~~g~~LnG~k~  162 (394)
T cd01155          83 RSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKKQWLEPLLDGKIRSAFAMTEPDVASSDATNIECSIERDGDDYVINGRKW  162 (394)
T ss_pred             hhcccchheeecccccccHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCCCchhhCEEEEEEECCEEEEEEEEE
Confidence            98633 22212222222345788999999999999999999999999999997 58999999999999999999999999


Q ss_pred             cccCCCC--CCEEEEEEEeCCC-----CCeEEEEEeCCCCCeEEeccCCccCccc--cceeeEEEeeeeeCCCCCcCCC-
Q 020535          205 WIGNSTF--ADVLVIFARNTTT-----NQINGYLVKKDAPGLTVTKIENKIGLRI--VQNGDILLKKVFVPDEDRLPGV-  274 (325)
Q Consensus       205 ~it~~~~--Ad~~~v~a~~~~~-----~~~~~~lv~~~~~Gv~~~~~~~~~G~~~--~~~~~v~f~~v~Vp~~~~lg~~-  274 (325)
                      |+||+..  +|+++|+++++++     .++++|+||++.||+++.+.|+++|+++  ++++++.|+||+||++++|+.. 
T Consensus       163 ~vs~~~~~~a~~~~v~a~~~~~~~~~~~~~~~flVp~~~~Gv~i~~~~~~~G~r~~~t~s~~v~f~dv~Vp~~~~lg~~~  242 (394)
T cd01155         163 WSSGAGDPRCKIAIVMGRTDPDGAPRHRQQSMILVPMDTPGVTIIRPLSVFGYDDAPHGHAEITFDNVRVPASNLILGEG  242 (394)
T ss_pred             EEcCCCCCCCCEEEEEEEeCCCcCCCCCceEEEEEeCCCCCeEeeccccccCCCCCCCCeeEEEEccEEecHHHcCCCCC
Confidence            9999954  7899999997532     4689999999999999999999999997  5788999999999999999875 


Q ss_pred             CChHHHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535          275 NSFQDTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       275 ~g~~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~  325 (325)
                      .|++.+...++..|+  ++.++|     +++++++. ++|+++|+|||+||+++
T Consensus       243 ~g~~~~~~~~~~~r~~~~a~~lG-----~a~~al~~~~~~~~~R~~fg~~i~~~  291 (394)
T cd01155         243 RGFEIAQGRLGPGRIHHCMRLIG-----AAERALELMCQRAVSREAFGKKLAQH  291 (394)
T ss_pred             hHHHHHHHHhhhhHHHHHHHHHH-----HHHHHHHHHHHHHhcCccCCCcHhhh
Confidence            488888899999998  788888     99999999 99999999999999864

FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.

>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]

Probab=100.00  E-value=3.7e-44  Score=341.51  Aligned_cols=266  Identities=33%  Similarity=0.482  Sum_probs=237.9

Q ss_pred             CCHHHHHHHHHHHHHHHhhccccHHHHHH---hCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCC
Q 020535           55 LTSEEQAVRMKVRECMEKEIAPIMAEYWE---KAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDA  130 (325)
Q Consensus        55 l~~~~~~l~~~~~~f~~~~~~~~~~~~d~---~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~  130 (325)
                      +++++.++++.+++|+.+.+.|...+.++   ...+|.++++++++.|++++ +|++|||.|.+..+...+.+++++.+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~G~~~~~~p~e~GG~~~~~~~~~~~~e~l~~~~~   84 (393)
T COG1960           5 LSEEQEALRAEVREFAEEELAPEAAEIDRRIEDERFPRELLRALAEAGLLGLTIPEEYGGLGLSPLEQAAVLEELARADA   84 (393)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCcchhhhhhhcccccCHHHHHHHHHhCCcccCCCChhhCCCCcchhHHHHHHHHHHhhCc
Confidence            45788899999999999999988888775   68899999999999999999 999999999999999999999999999


Q ss_pred             cchhHHHHhhhH---HHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCc-eEEEEeCCEEEEEeEeecc
Q 020535          131 SCSTFILVHSSL---AMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALN-TTATKVEGGWILEGQKRWI  206 (325)
Q Consensus       131 s~~~~~~~~~~~---~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~-~~a~~~~~g~~lnG~K~~i  206 (325)
                      +.+.....+...   ....+..+|+++|+++|+|++++|+.+.|+++|||.+|||+..+. |++++.+++|+|||+|.||
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~g~~~q~~~~l~~~~~G~~~~~~~~tEp~~Gsd~~~~~~t~a~~~~g~~~lnG~K~~i  164 (393)
T COG1960          85 GGALALGLTHGGLGALAPTILRFGTEEQKRRYLPRLASGELIGAFALTEPGAGSDLASLRTTAAVRDDGDYVLNGQKIWI  164 (393)
T ss_pred             chhhhHHHhccccccchHHHHHcCCHHHHHHhchhhhCCchhheeeccCCCCCcchhcCceeEEEecCCCEEEEeEEEEE
Confidence            876654443322   123667899999999999999999999999999999999999988 6676766669999999999


Q ss_pred             cCCCCCCEEEEEEEeCCC----CCeEEEEEeCC-CCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHH
Q 020535          207 GNSTFADVLVIFARNTTT----NQINGYLVKKD-APGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDT  280 (325)
Q Consensus       207 t~~~~Ad~~~v~a~~~~~----~~~~~~lv~~~-~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~  280 (325)
                      ||++.||+++|+++++++    +++++|+||++ .||+++.+.+++.|+++++++++.|+||+||.+++||+. .|+..+
T Consensus       165 s~~~~ad~~~v~Ar~~~~~~~~~gis~flV~~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~lig~~~~g~~~~  244 (393)
T COG1960         165 SNAPVADWLLVLARTDPAPGKHKGISLFLVPKDLTPGVSVGPILKKMGLRGSATGEVFFDDVRVPAENLLGEEGDGFKIA  244 (393)
T ss_pred             cCCCCCCEEEEEEEcCCcccccCceEEEEEeCCCCCCeeeccccCcCCcCCCCeeEEEECCeeccHHHcCCcCCchHHHH
Confidence            999999999999999653    57999999999 599999999865599999999999999999999999964 599999


Q ss_pred             HhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535          281 SKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       281 ~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~  325 (325)
                      ...++.+|+  ++.++|     +++++++. ++|+++|++||+||+++
T Consensus       245 ~~~l~~~r~~~aa~~~G-----~a~~al~~~~~ya~~R~~fg~~i~~~  287 (393)
T COG1960         245 METLNVERLGIAAQALG-----IAEAALEEAVAYARERKQFGRPIADF  287 (393)
T ss_pred             HHhhchHHHHHHHHHHH-----HHHHHHHHHHHHHHHhHhcCCchhhc
Confidence            999999999  788889     99999999 99999999999998864

>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5

Probab=100.00  E-value=1.5e-43  Score=338.71  Aligned_cols=252  Identities=23%  Similarity=0.249  Sum_probs=225.3

Q ss_pred             HHHHHHHHHhhccccHHHHHHhCC--------CC---hhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCC
Q 020535           63 RMKVRECMEKEIAPIMAEYWEKAE--------FP---FHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDA  130 (325)
Q Consensus        63 ~~~~~~f~~~~~~~~~~~~d~~~~--------~p---~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~  130 (325)
                      ++.+++|+.+++.|.+.++|+...        ||   .++|++|++.||+++ +|++|||.|.++.++..++|+++++|.
T Consensus         2 ~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~~p~~~~e~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~l~~~~~   81 (407)
T cd01153           2 LEEVARLAENVLAPLNADGDREGPVFDDGRVVVPPPFKEALDAFAEAGWMALGVPEEYGGQGLPITVYSALAEIFSRGDA   81 (407)
T ss_pred             hHHHHHHHHHHhhhhHHhHhccCCcccCCceEcChhHHHHHHHHHHCCCCCCCCccccCCCCCCHHHHHHHHHHHHhhhH
Confidence            567899999999999888877654        88   678999999999999 999999999999999999999999999


Q ss_pred             cchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEe-CCEEEEEeEeecccCC
Q 020535          131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV-EGGWILEGQKRWIGNS  209 (325)
Q Consensus       131 s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~-~~g~~lnG~K~~it~~  209 (325)
                      ++++.+.+|.  +...+..+|+++||++|++++++|+.++|+++|||++|||+..+.|+++++ +|||+|||+|.|+||+
T Consensus        82 s~~~~~~~~~--~~~~l~~~g~~~~~~~~l~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~~~ggy~l~G~K~~is~~  159 (407)
T cd01153          82 PLMYASGTQG--AAATLLAHGTEAQREKWIPRLAEGEWTGTMCLTEPDAGSDLGALRTKAVYQADGSWRINGVKRFISAG  159 (407)
T ss_pred             HHHHHHHHhH--HHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCCcccceEEEEECCCCcEEEeeEEEEEeCC
Confidence            8877655543  345678889999999999999999999999999999999999999999998 5679999999999999


Q ss_pred             CCC----CEEEEEEEeCC----CCCeEEEEEeCCC-----CCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-C
Q 020535          210 TFA----DVLVIFARNTT----TNQINGYLVKKDA-----PGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-N  275 (325)
Q Consensus       210 ~~A----d~~~v~a~~~~----~~~~~~~lv~~~~-----~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~  275 (325)
                      ..|    ++++|++++++    .+++++|+||++.     |||++.+.|+++|+++++++++.|+||+||   +||.+ .
T Consensus       160 ~~a~~~~~~~~v~a~~~~~~~~~~~~~~flVp~~~~~~~~~gv~i~~~~~~~G~r~t~s~~v~f~~v~Vp---~lg~~~~  236 (407)
T cd01153         160 EHDMSENIVHLVLARSEGAPPGVKGLSLFLVPKFLDDGERNGVTVARIEEKMGLHGSPTCELVFDNAKGE---LIGEEGM  236 (407)
T ss_pred             CcccccccEEEEEEeCCCCCCCCCceEEEEEeccCcCCCCCCeEeccchhccCCCCCCeEEEEEcCEEEe---eeCCCCc
Confidence            876    57889998753    2368999999987     899999999999999999999999999999   77764 4


Q ss_pred             ChHHHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCC
Q 020535          276 SFQDTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQI  324 (325)
Q Consensus       276 g~~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~  324 (325)
                      |+......++..|+  ++.++|     +++++++. ++|+++|++||+||++
T Consensus       237 g~~~~~~~l~~~r~~~aa~~lG-----~a~~al~~a~~~a~~R~~fg~~i~~  283 (407)
T cd01153         237 GLAQMFAMMNGARLGVGTQGTG-----LAEAAYLNALAYAKERKQGGDLIKA  283 (407)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhCeecCCcCcc
Confidence            88888899999998  788888     99999999 9999999999999543

Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.

>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=100.00  E-value=7.5e-45  Score=341.02  Aligned_cols=270  Identities=25%  Similarity=0.374  Sum_probs=242.0

Q ss_pred             ccCCCCCCHHHHHHHH----HHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHH
Q 020535           49 YQFDDLLTSEEQAVRM----KVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIA  123 (325)
Q Consensus        49 ~~~~~~l~~~~~~l~~----~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e  123 (325)
                      +.+.+.+++|+.++.+    ..++|+.+...  ....|+....|.+.++.|+++|+|++ +|++|||.|+...+++++.|
T Consensus        70 ~~yPev~~~e~~~~~~~~~~pl~r~f~e~~d--~~k~d~~~~~~~~t~e~l~elG~fgl~v~~e~~G~G~~ntq~arl~e  147 (634)
T KOG0137|consen   70 FPYPEVITSEQKELLEQFVLPLERFFEEVND--SKKNDKLGKIEETTLEALRELGLFGLQVPSEFDGLGFCNTQYARLFE  147 (634)
T ss_pred             cCCcccCcHHHHHHHHhhhhhHHHhhhccch--hhhhhhhcccchhHHHHHHHhCceeeccCcccCccccchHHHHHHhh
Confidence            3333345666665553    45555554432  23346777899999999999999999 99999999999999999999


Q ss_pred             HHHccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCE--EEEEe
Q 020535          124 EIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGG--WILEG  201 (325)
Q Consensus       124 ~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g--~~lnG  201 (325)
                      .++.+|.++.+.+..|.+++.-.|..+|+++||++|||+|++|+.+++||+|||..|||.+...|+|+..+||  |+|||
T Consensus       148 ~~~~~D~~v~~tl~ahq~i~~k~l~lyGt~~Qk~kYL~~LaSg~~~~A~altE~s~Gsdaas~~~~a~~s~dg~~y~LNG  227 (634)
T KOG0137|consen  148 IVSVADLNVGVTLGAHQSIGLKGLLLYGTDEQKQKYLPKLASGKLIAAFALTEPSSGSDAASGRTTATLSPDGKHYVLNG  227 (634)
T ss_pred             ccccccccceeeeccchhhheeeeeecCCHHHHHHHHHhhhcCCccceEEEecCCCCcccccceeeeeecCCCCeEEEcC
Confidence            9999999999888888888888999999999999999999999999999999999999999999999998766  99999


Q ss_pred             EeecccCCCCCCEEEEEEEeCC-------CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC
Q 020535          202 QKRWIGNSTFADVLVIFARNTT-------TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV  274 (325)
Q Consensus       202 ~K~~it~~~~Ad~~~v~a~~~~-------~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~  274 (325)
                      .|.||+|+..||+++|+|+++-       .+++++|||+++..|++-.+.+.++|.+++.++++.|+++.||.+++||.+
T Consensus       228 ~Kiwisn~g~Adif~VfAqt~~~~~~g~~k~k~T~Flver~~~Gvt~G~~e~k~GiKgsnt~~v~f~~~ki~~envlG~~  307 (634)
T KOG0137|consen  228 SKIWISNGGLADIFTVFAQTEVDPADGEVKRKITAFLVERDFGGVTNGPPEKKMGIKGSNTAEVHFEGVKIPIENVLGKP  307 (634)
T ss_pred             eeEEEecCccceeeeeeeccccCCCCccccCceEEEEEeccccCccCCCchhhhcccccceeeeeeccccccHHHhcCCC
Confidence            9999999999999999999851       246999999999999999999999999999999999999999999999986


Q ss_pred             -CChHHHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535          275 -NSFQDTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       275 -~g~~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~  325 (325)
                       .|++++++.++.+|+  ++..+|     .+++++++ .+|+..|+|||++|.++
T Consensus       308 G~G~kva~nilnsgR~~~aaa~~G-----~mkr~I~~~~d~~~~rtQ~g~~L~~~  357 (634)
T KOG0137|consen  308 GDGFKVAMNILNSGRFGMAAALLG-----LMKRIIEEAADYATNRTQFGKKLHDF  357 (634)
T ss_pred             CcchHHHHHHHccCCcchhHHHHH-----HHHHHHHHHHHHhhcceecCcchhhh
Confidence             499999999999999  888888     99999999 99999999999999875

>PLN02636 acyl-coenzyme A oxidase

Probab=100.00  E-value=8.6e-43  Score=348.90  Aligned_cols=272  Identities=19%  Similarity=0.289  Sum_probs=239.6

Q ss_pred             CCCCCcccCCCCCCHHHHHHHHHHHHHHHhh--c-cccHHHHHHhCCCC-hhHHHHHHhCcccCC-cccCCCCCCccHHH
Q 020535           43 PCASDYYQFDDLLTSEEQAVRMKVRECMEKE--I-APIMAEYWEKAEFP-FHVIPKLGALRVAGG-TIKGYGCPGHSVTG  117 (325)
Q Consensus        43 ~~~~d~~~~~~~l~~~~~~l~~~~~~f~~~~--~-~~~~~~~d~~~~~p-~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~  117 (325)
                      .++.|...|...++++++++++.+++|+.+.  + .|....+++.+.++ .++++.+++.|++++ +|++      +..+
T Consensus        49 ~~~f~~~~l~~~l~~~~~~~r~~v~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~g~~~~~~~~~------~~~~  122 (686)
T PLN02636         49 KLSVNTEKLSLYMRGKHRDIQEKIYEFFNSRPDLQTPVEISKDEHRELCMRQLTGLVREAGIRPMKYLVE------DPAK  122 (686)
T ss_pred             cCCCCHHHHHhhcCCcHHHHHHHHHHHHHhCccccCCchhhHHHhhhhHHHHHHHHHHhcCccccccccC------CHHH
Confidence            3444544566667888889999999999877  3 56666677777888 889999999999999 7865      6788


Q ss_pred             HHHHHHHHHccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEe--CC
Q 020535          118 AAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EG  195 (325)
Q Consensus       118 ~~~v~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~--~~  195 (325)
                      +..+.|++++.+.+++..+.+|..+....|..+|+++||++|||++.+|+.++|+|+|||++|||+..++|+|+++  +|
T Consensus       123 ~~~~~e~l~~~d~s~~~~~~vh~~l~~~~I~~~GTeeQk~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtA~~d~~~d  202 (686)
T PLN02636        123 YFAITEAVGSVDMSLGIKLGVQYSLWGGSVINLGTKKHRDKYFDGIDNLDYPGCFAMTELHHGSNVQGLQTTATFDPLTD  202 (686)
T ss_pred             HHHHHHHHHhhchhhHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCChhhhhhccCCCcccCcccCeeEEEEcCCCC
Confidence            8999999999998887767788777778899999999999999999999999999999999999999999999998  67


Q ss_pred             EEEEE-----eEeecccCCCC-CCEEEEEEEeC---------CCCCeEEEEEeCC-------CCCeEEeccCCccCcccc
Q 020535          196 GWILE-----GQKRWIGNSTF-ADVLVIFARNT---------TTNQINGYLVKKD-------APGLTVTKIENKIGLRIV  253 (325)
Q Consensus       196 g~~ln-----G~K~~it~~~~-Ad~~~v~a~~~---------~~~~~~~~lv~~~-------~~Gv~~~~~~~~~G~~~~  253 (325)
                      +|+||     |+|+||+|+.. ||+++|+||+.         .+.|+++||||.+       .|||++.+...++|+++.
T Consensus       203 efVLntP~~~g~K~wI~na~~~ad~~vV~Arl~~~~~~~~~~~~~Gi~~FlVp~r~~~~~~~~PGV~v~~~~~K~G~~g~  282 (686)
T PLN02636        203 EFVINTPNDGAIKWWIGNAAVHGKFATVFARLKLPTHDSKGVSDMGVHAFIVPIRDMKTHQVLPGVEIRDCGHKVGLNGV  282 (686)
T ss_pred             eEEECCCCCCeEEEeecCCcccCCEEEEEEEecCCCCCccCCCCCCeeEEEEecCccccCCCCCCeEeccCCCccCCCCC
Confidence            89999     99999999976 99999999985         1357999999987       599999999999999999


Q ss_pred             ceeeEEEeeeeeCCCCCcCC-----------------CCChHHHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhh
Q 020535          254 QNGDILLKKVFVPDEDRLPG-----------------VNSFQDTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSS  313 (325)
Q Consensus       254 ~~~~v~f~~v~Vp~~~~lg~-----------------~~g~~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~  313 (325)
                      +++.+.|+||+||.+++|+.                 +.|+..+...+..+|+  ++.++|     ++++|++. ++|++
T Consensus       283 dng~l~FdnVrVP~~nlLg~~g~v~~~G~y~~~~~~~~~gf~~~~~~l~~~R~~iaa~a~g-----~a~~Al~iAvrYa~  357 (686)
T PLN02636        283 DNGALRFRSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYGSVG-----VLKASNTIAIRYSL  357 (686)
T ss_pred             cceEEEEeeEEECHHHhccccccccCCCcccccCCCcchHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence            99999999999999999952                 2378899999999999  888889     99999999 99999


Q ss_pred             hcccCCCC------CCCC
Q 020535          314 HDSGWLAP------LQII  325 (325)
Q Consensus       314 ~R~~fG~p------l~~~  325 (325)
                      +|+|||+|      |+++
T Consensus       358 ~R~qFg~p~~~e~~I~d~  375 (686)
T PLN02636        358 LRQQFGPPKQPEISILDY  375 (686)
T ss_pred             cCEeCCCCCCCCCccccc
Confidence            99999999      7764

>PLN02876 acyl-CoA dehydrogenase

Probab=100.00  E-value=2.1e-42  Score=355.91  Aligned_cols=268  Identities=18%  Similarity=0.200  Sum_probs=232.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhccccHHHHHHhC-------CCC-hhHHHHHH-hCcccCC-cccC---------------
Q 020535           53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKA-------EFP-FHVIPKLG-ALRVAGG-TIKG---------------  107 (325)
Q Consensus        53 ~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~-------~~p-~~~~~~l~-~~Gl~~~-~p~~---------------  107 (325)
                      +.++++++++++++++|+++++.|...++++..       .+| .+.|+++. ++||+++ +|++               
T Consensus       400 ~~~s~~~~~l~~~~~~f~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~p~~~~~~~~~~~~~~~~~  479 (822)
T PLN02876        400 FVPSEKVLELRKKLIKFMEDHIYPMENEFYKLAQSSSRWTVHPEEERLKELAKKEGLWNLWIPLDSAARARKLLFEDNKH  479 (822)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHccCccHHHHhhcccccccccCcchHHHHHHHHHcCcccCCCCchhhhhhhhcccccccc
Confidence            447899999999999999999998876665432       377 68888875 9999999 9985               


Q ss_pred             ---------CCCCCccHHHHHHHHHHHHccCCcchhH-HHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCC
Q 020535          108 ---------YGCPGHSVTGAAIAIAEIARVDASCSTF-ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEP  177 (325)
Q Consensus       108 ---------~GG~g~s~~~~~~v~e~la~~~~s~~~~-~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp  177 (325)
                               |||.|++..+.+.++|++++.+.+...+ ...+...++.+|..+|+++||++||+++++|+.++|+|+|||
T Consensus       480 ~~~~~~~~~~GG~G~~~~~~~~~~Eelg~~~~~~~~~~~~~~~~~~~~~l~~~gt~eqk~~~L~~l~~G~~~~~~a~tEp  559 (822)
T PLN02876        480 MVSGDSADQLLGAGLSNLEYGYLCEIMGRSVWAPQVFNCGAPDTGNMEVLLRYGNKEQQLEWLIPLLEGKIRSGFAMTEP  559 (822)
T ss_pred             cccccccccCCCCCCCHHHHHHHHHHHhccchHHHHhcccCcccccHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCC
Confidence                     9999999999999999999986543221 112222334578899999999999999999999999999999


Q ss_pred             C-CCCCCCCCceEEEEeCCEEEEEeEeecccCC--CCCCEEEEEEEeCC----CCCeEEEEEeCCCCCeEEeccCCccCc
Q 020535          178 A-YGSDASALNTTATKVEGGWILEGQKRWIGNS--TFADVLVIFARNTT----TNQINGYLVKKDAPGLTVTKIENKIGL  250 (325)
Q Consensus       178 ~-~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~--~~Ad~~~v~a~~~~----~~~~~~~lv~~~~~Gv~~~~~~~~~G~  250 (325)
                      + +|||+.++.|+|+++++||+|||+|.||||+  +.||+++|++++++    ++++++|+||.+.|||++.+.|+++|+
T Consensus       560 ~~~gsd~~~~~t~a~~~g~g~vLnG~K~~vtga~~~~ad~~lv~ar~~~~~~~~~~~s~flV~~~~pGv~i~~~~~~~G~  639 (822)
T PLN02876        560 QVASSDATNIECSIRRQGDSYVINGTKWWTSGAMDPRCRVLIVMGKTDFNAPKHKQQSMILVDIQTPGVQIKRPLLVFGF  639 (822)
T ss_pred             CccCcccccceEEEEEcCCEEEEEeEEEEecCCCCCCCCEEEEEEecCCCCCCCCcceEEEEeCCCCCceeecccceecc
Confidence            7 6899999999999999999999999999999  57999999999753    246899999999999999999999999


Q ss_pred             ccc--ceeeEEEeeeeeCCCCCcCCC-CChHHHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCC
Q 020535          251 RIV--QNGDILLKKVFVPDEDRLPGV-NSFQDTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQI  324 (325)
Q Consensus       251 ~~~--~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~  324 (325)
                      +++  +++++.|+||+||.++++|.. .|+..+...++.+|+  |+.++|     ++++|++. ++|+++|+|||+||++
T Consensus       640 r~~~~~~~~v~fd~V~Vp~~~~lg~~g~g~~~~~~~l~~~r~~~aa~~vG-----~a~~ale~a~~ya~~R~~fg~~i~~  714 (822)
T PLN02876        640 DDAPHGHAEISFENVRVPAKNILLGEGRGFEIAQGRLGPGRLHHCMRLIG-----AAERGMQLMVQRALSRKAFGKLIAQ  714 (822)
T ss_pred             CCCCCCeeEEEEcceeechhheecCCCchHHHHHHHHhhhHHHHHHHHHH-----HHHHHHHHHHHHHHhhhhcCCchhh
Confidence            974  588999999999999999764 488888999999998  888889     99999999 9999999999999987


Q ss_pred             C
Q 020535          325 I  325 (325)
Q Consensus       325 ~  325 (325)
                      +
T Consensus       715 ~  715 (822)
T PLN02876        715 H  715 (822)
T ss_pred             C
Confidence            4

>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26

Probab=100.00  E-value=3.2e-42  Score=326.78  Aligned_cols=257  Identities=28%  Similarity=0.316  Sum_probs=225.2

Q ss_pred             HHHHHHHHHHHHHHhhccccHHHH-----HHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCc
Q 020535           58 EEQAVRMKVRECMEKEIAPIMAEY-----WEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDAS  131 (325)
Q Consensus        58 ~~~~l~~~~~~f~~~~~~~~~~~~-----d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s  131 (325)
                      +++++++.+++|+++++.|...+.     ++.+.+|.++++.|++.||+++ +|++|||.|.+..+.+.++|++++.+.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~l~~~~~~   81 (380)
T cd01152           2 SEEAFRAEVRAWLAAHLPPELREESALGYREGREDRRRWQRALAAAGWAAPGWPKEYGGRGASLMEQLIFREEMAAAGAP   81 (380)
T ss_pred             cHHHHHHHHHHHHHhcCCccccccccccccccchHHHHHHHHHHhCCCCccCCChhhCCCCCCHHHHHHHHHHHHhcCCC
Confidence            567899999999999999876543     3446789999999999999999 9999999999999999999999999998


Q ss_pred             chhH-HHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCC
Q 020535          132 CSTF-ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST  210 (325)
Q Consensus       132 ~~~~-~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~  210 (325)
                      +++. +.++  .+...|..+|+++|+++||+++.+|+.+.++++|||.+|||+..+.++++++++||+|||+|.|||++.
T Consensus        82 ~~~~~~~~~--~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~L~G~K~~it~~~  159 (380)
T cd01152          82 VPFNQIGID--LAGPTILAYGTDEQKRRFLPPILSGEEIWCQGFSEPGAGSDLAGLRTRAVRDGDDWVVNGQKIWTSGAH  159 (380)
T ss_pred             cccchhhHH--HHHHHHHHhCCHHHHHHHhHHHhCCchhheeecCCCCCCcchhhCeeeEEEcCCeEEEecEEEEEcCcc
Confidence            8864 3322  344578889999999999999999999899999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEEeCC----CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhch
Q 020535          211 FADVLVIFARNTT----TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVSE  285 (325)
Q Consensus       211 ~Ad~~~v~a~~~~----~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~  285 (325)
                      .||+++|++++++    +.++++|+||++.||+++.+.|+++|  ++.++++.|+||+||.+++||.. .|+..+...++
T Consensus       160 ~ad~~lv~a~~~~~~~~~~~~~~~lVp~~~~Gv~~~~~~~~~g--~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~l~  237 (380)
T cd01152         160 YADWAWLLVRTDPEAPKHRGISILLVDMDSPGVTVRPIRSING--GEFFNEVFLDDVRVPDANRVGEVNDGWKVAMTTLN  237 (380)
T ss_pred             ccCEEEEEEEeCCCccCcCCeEEEEEeCCCCceEeeehhhccC--CCCcceEEecCcCcchhcccCCCCchHHHHHHHHH
Confidence            9999999999753    23689999999999999999998887  45789999999999999999875 48888888888


Q ss_pred             hhhHHHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535          286 GEETVWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       286 ~~r~aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~  325 (325)
                      ..|++  ..|     ++.++++. ++|+++|.+||+||+++
T Consensus       238 ~~r~~--~~~-----~~~~~~~~a~~~a~~r~~~g~~l~~~  271 (380)
T cd01152         238 FERVS--IGG-----SAATFFELLLARLLLLTRDGRPLIDD  271 (380)
T ss_pred             hcccc--cch-----hhhHHHHHHHHHHHHHHhcCCCcccC
Confidence            88862  225     66777788 99999999999999874

Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.

>PTZ00456 acyl-CoA dehydrogenase; Provisional

Probab=100.00  E-value=1.8e-41  Score=336.48  Aligned_cols=253  Identities=18%  Similarity=0.208  Sum_probs=219.3

Q ss_pred             HHHHHHHHHHHHHHHhhccccHHHHHHhCCC---------C---hhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHH
Q 020535           57 SEEQAVRMKVRECMEKEIAPIMAEYWEKAEF---------P---FHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIA  123 (325)
Q Consensus        57 ~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~---------p---~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e  123 (325)
                      +.-..+++.+++|+++++.|...+.|+++.+         |   .++|+++.+.||+++ +|++|||.|++......+.|
T Consensus        58 ~~~~~il~~a~~fa~~~~~p~~~~~D~~~~~~~~~g~v~~p~g~~e~~~~l~e~G~~~l~~Pee~GG~Gl~~~~~~~~~E  137 (622)
T PTZ00456         58 ELMDSLLEEASKLATQTLLPLYESSDSEGCVLLKDGNVTTPKGFKEAYQALKAGGWTGISEPEEYGGQALPLSVGFITRE  137 (622)
T ss_pred             HHHHHHHHHHHHHHHHhcccchhhHhhccCccccCCcccCChhHHHHHHHHHHcCCCCCCCCcccCCCCcCHHHHHHHHH
Confidence            4457899999999999999998888876533         5   589999999999999 99999999999875555556


Q ss_pred             HHHccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCE-EEEEeE
Q 020535          124 EIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGG-WILEGQ  202 (325)
Q Consensus       124 ~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g-~~lnG~  202 (325)
                      ++++.+.+++++...+ ..++.+|..+|+++||++|||++++|++++++++|||++|||+..++|+|++++|| |+|||+
T Consensus       138 ~~~~a~~~~~~~~~l~-~ga~~~L~~~Gs~eqk~~~Lp~l~sGe~~~t~alTEp~aGSD~~~l~T~A~~~gdG~y~L~G~  216 (622)
T PTZ00456        138 LMATANWGFSMYPGLS-IGAANTLMAWGSEEQKEQYLTKLVSGEWSGTMCLTEPQCGTDLGQVKTKAEPSADGSYKITGT  216 (622)
T ss_pred             HHHHhchHHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHhcCChhhhhhccCCccCCCcccCeeEEEECCCCcEEEeeE
Confidence            5677777765443332 23456889999999999999999999999999999999999999999999999885 999999


Q ss_pred             eecccCCCCC----CEEEEEEEeCC----CCCeEEEEEeCCC----------CCeEEeccCCccCccccceeeEEEeeee
Q 020535          203 KRWIGNSTFA----DVLVIFARNTT----TNQINGYLVKKDA----------PGLTVTKIENKIGLRIVQNGDILLKKVF  264 (325)
Q Consensus       203 K~~it~~~~A----d~~~v~a~~~~----~~~~~~~lv~~~~----------~Gv~~~~~~~~~G~~~~~~~~v~f~~v~  264 (325)
                      |.|||++..+    ++++|+||+++    .+++++|+||++.          +||++.+.++++|+++++++++.|+|+ 
T Consensus       217 K~fIt~g~~~~~~n~~~lVlAr~~~~~~g~~GiSlFlVp~~~~~~~G~~~~~~gv~~~~~~~kmG~~gs~t~~l~fd~~-  295 (622)
T PTZ00456        217 KIFISAGDHDLTENIVHIVLARLPNSLPTTKGLSLFLVPRHVVKPDGSLETAKNVKCIGLEKKMGIKGSSTCQLSFENS-  295 (622)
T ss_pred             EEEecCCchhhccCcEEEEEEEecCCCCCCCceEEEEEeCCCCCcCCCccCCCCeeecCcccccCCCCCceEEEEeeCh-
Confidence            9999999863    57899999853    3679999999864          478888889999999999999999994 


Q ss_pred             eCCCCCcCCCC-ChHHHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccC
Q 020535          265 VPDEDRLPGVN-SFQDTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGW  318 (325)
Q Consensus       265 Vp~~~~lg~~~-g~~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~f  318 (325)
                        .+++||.++ |++.+...++..|+  ++.++|     +++++++. ++|+++|+||
T Consensus       296 --~~~llG~~~~Gl~~~~~~mn~aRl~vaa~~lG-----~a~~Al~~Al~YAk~R~Qf  346 (622)
T PTZ00456        296 --VGYLIGEPNAGMKQMFTFMNTARVGTALEGVC-----HAELAFQNALRYARERRSM  346 (622)
T ss_pred             --hHhhcCCCChHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhcccC
Confidence              689999854 99999999999999  888888     99999999 9999999996

>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C

Probab=100.00  E-value=2.5e-41  Score=320.40  Aligned_cols=245  Identities=20%  Similarity=0.257  Sum_probs=213.0

Q ss_pred             HHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhhHHH
Q 020535           66 VRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAM  144 (325)
Q Consensus        66 ~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~~~~~~~~~~~~~  144 (325)
                      ++++. +.+.+.+.++|+.+.+|.+.|+.|++.||+++ +|++|||.|+++.+.+.++|++++.|+++++.+.+|.. +.
T Consensus         3 ~~~~~-~~~~~~a~~~d~~~~~p~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~~-~~   80 (377)
T cd01163           3 ARPLA-ARIAEGAAERDRQRGLPYEEVALLRQSGLGTLRVPKEYGGLGASLPDLYEVVRELAAADSNIAQALRAHFG-FV   80 (377)
T ss_pred             HHHHH-HHHhhhhhhhhhcCCCCHHHHHHHHHCCCccccCchhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH-HH
Confidence            34433 34777888889999999999999999999999 99999999999999999999999999999887767653 34


Q ss_pred             HHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCCCCCEEEEEEEeCCC
Q 020535          145 LTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTT  224 (325)
Q Consensus       145 ~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~~Ad~~~v~a~~~~~  224 (325)
                      .++..+|+++||++|++++.+|+.++ .++|||++|+ +..+.++++++++||+|||+|.||||+..||+++|.+++++ 
T Consensus        81 ~~l~~~g~~~~~~~~l~~~~~g~~~~-~a~tE~~~~~-~~~~~~~~~~~~~g~~lnG~K~~is~a~~Ad~~~v~a~~~~-  157 (377)
T cd01163          81 EALLLAGPEQFRKRWFGRVLNGWIFG-NAVSERGSVR-PGTFLTATVRDGGGYVLNGKKFYSTGALFSDWVTVSALDEE-  157 (377)
T ss_pred             HHHHhcCcHHHHHHHHHHHhCCCeEE-EeecCCCCCC-CCCceEEEEecCCEEEEeceEEeecCCccceEEEEEEEcCC-
Confidence            68888999999999999999999665 5999999876 66777888888899999999999999999999999999764 


Q ss_pred             CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCCC-ChHHHHhhchhhhH--HHhhcccCcHHH
Q 020535          225 NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVN-SFQDTSKVSEGEET--VWSTISSFSDQP  301 (325)
Q Consensus       225 ~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~~-g~~~~~~~l~~~r~--aa~~~G~~~~~~  301 (325)
                      +++++|+||++.|||++.+.|+++|++++++++++|+||+||.++++|..+ ++. ....+...|+  ++.++|     +
T Consensus       158 ~~~~~~lV~~~~~Gv~i~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~lg~~~~g~~-~~~~~~~~~l~~aa~~lG-----~  231 (377)
T cd01163         158 GKLVFAAVPTDRPGITVVDDWDGFGQRLTASGTVTFDNVRVEPDEVLPRPNAPDR-GTLLTAIYQLVLAAVLAG-----I  231 (377)
T ss_pred             CcEEEEEEeCCCCceeecCCcccccCccCCcceEEEeeEEECHHHccCCCccccc-cccccHHHHHHHHHHHHH-----H
Confidence            467899999999999999999999999999999999999999999998754 443 2233445566  778888     9


Q ss_pred             HHHHHHH-hhhhhhcc-cCCCC
Q 020535          302 AETCSDA-GKYSSHDS-GWLAP  321 (325)
Q Consensus       302 a~~al~~-~~ya~~R~-~fG~p  321 (325)
                      ++++++. ++|+++|+ +||++
T Consensus       232 a~~al~~~~~~~~~R~~~~g~~  253 (377)
T cd01163         232 ARAALDDAVAYVRSRTRPWIHS  253 (377)
T ss_pred             HHHHHHHHHHHHHhcCCCCCcC
Confidence            9999999 99999995 88874

DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.

>PLN02312 acyl-CoA oxidase

Probab=100.00  E-value=2e-39  Score=324.09  Aligned_cols=231  Identities=21%  Similarity=0.294  Sum_probs=206.5

Q ss_pred             HHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhc
Q 020535           82 WEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYL  160 (325)
Q Consensus        82 d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l  160 (325)
                      ++...++.+.++++.+.|+.++ +|++  |.+ +....+.++|++++.+.+++..+.+|..+....|..+|+++||++||
T Consensus       101 ~~~~~~~~~~~~~l~~~g~~~~~~pe~--g~~-~~~~~~~~~Eel~~~d~s~~~~~~vh~~l~~~~I~~~GTeeqk~~~L  177 (680)
T PLN02312        101 EQQREITMKRILYLLERGVFRGWLTET--GPE-AELRKLALLEVIGIYDHSLAIKLGVHFFLWGGAIKFLGTKRHHDKWL  177 (680)
T ss_pred             HHHHHhHHHHHHHHHHhhhcCCCCCCC--CCc-cHHHHHHHHHHHHHhcchHHHHHHhhhhhHHHHHHHhCCHHHHHHHH
Confidence            4556778899999999999999 8874  223 57778899999999988877667788777778899999999999999


Q ss_pred             hhhhcCCceeEEEecCCCCCCCCCCCceEEEEeC--CEEEEE-----eEeecccCC-CCCCEEEEEEEeCC---CCCeEE
Q 020535          161 PSLAQLNTIACWALTEPAYGSDASALNTTATKVE--GGWILE-----GQKRWIGNS-TFADVLVIFARNTT---TNQING  229 (325)
Q Consensus       161 ~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~--~g~~ln-----G~K~~it~~-~~Ad~~~v~a~~~~---~~~~~~  229 (325)
                      |++.+|+.++|+|+|||++|||+..+.|+|++++  ++|+||     |+|+||+|+ ..|++++|+||+..   +.|+++
T Consensus       178 ~~~~~ge~ig~fA~TEpghGSdv~~leTtAt~D~~~defVLNtPt~~g~K~wig~a~~~A~~~vV~Arl~~~~~~~Gv~~  257 (680)
T PLN02312        178 KDTEDYVVKGCFAMTELGHGSNVRGIETVTTYDPKTEEFVINTPCESAQKYWIGGAANHATHTIVFSQLHINGKNEGVHA  257 (680)
T ss_pred             HHHhCCCeeeEeeecCCCcCcchhcCeEEEEEeCCCCEEEECCCCCCeEEECccCCcccCCEEEEEEEECCCCCCCCeEE
Confidence            9999999999999999999999999999999984  679999     799999998 78999999999852   357999


Q ss_pred             EEEe-C--C---CCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCC-----------------CCChHHHHhhchh
Q 020535          230 YLVK-K--D---APGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-----------------VNSFQDTSKVSEG  286 (325)
Q Consensus       230 ~lv~-~--~---~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~-----------------~~g~~~~~~~l~~  286 (325)
                      |+|| +  +   .|||++.+...++|+++.+++.+.|+||+||.+++||+                 ..|+..++..+..
T Consensus       258 FlV~ird~~~~~~PGV~ig~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~~~V~~~G~y~~~~~~~~~gf~~~~~~l~~  337 (680)
T PLN02312        258 FIAQIRDQDGNICPNIRIADCGHKIGLNGVDNGRIWFDNLRIPRENLLNSVADVSPDGKYVSAIKDPDQRFGAFLAPLTS  337 (680)
T ss_pred             EEEeecCCCCCCCCCEEeccCCCcccccCCCceEEEEccEEECHHHhCCccceeCCCCceecCCCCccchHHHHHHHHHH
Confidence            9998 2  3   79999999999999999999999999999999999984                 3478888899999


Q ss_pred             hhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCC
Q 020535          287 EET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLA  320 (325)
Q Consensus       287 ~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~  320 (325)
                      +|+  ++.++|     ++++|++. ++|+++|+|||+
T Consensus       338 ~R~~iaa~a~g-----~a~~Al~iAvrYa~~R~QFg~  369 (680)
T PLN02312        338 GRVTIAVSAIY-----SSKVGLAIAIRYSLSRRAFSV  369 (680)
T ss_pred             HHHHHHHHHHH-----HHHHHHHHHHHHHHhCeecCC
Confidence            999  888889     99999999 999999999996

>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product

Probab=100.00  E-value=2.1e-38  Score=303.84  Aligned_cols=246  Identities=18%  Similarity=0.193  Sum_probs=207.3

Q ss_pred             HHHHHHhhccccHHHHHHhCC------CC---hhHHHHHHhCcccCCcccCCCCCCccHHHHHHHHHHHHccCCcchhHH
Q 020535           66 VRECMEKEIAPIMAEYWEKAE------FP---FHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFI  136 (325)
Q Consensus        66 ~~~f~~~~~~~~~~~~d~~~~------~p---~~~~~~l~~~Gl~~~~p~~~GG~g~s~~~~~~v~e~la~~~~s~~~~~  136 (325)
                      ..++++.+ .|...++|+.+.      +|   .++++++.+.||++++|+++|+.|  ......+.+.++..+...++.+
T Consensus        37 ~~~~a~~~-~P~~~~~d~~g~r~~~v~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~p~  113 (418)
T cd01154          37 LARLADRN-PPVLEMWDRWGRRVDRVWVHPAWHALMRRLIEEGVINIEDGPAGEGR--RHVHFAAGYLLSDAAAGLLCPL  113 (418)
T ss_pred             HHHHhhcC-CCcccCCCCCCCcCCeEEeCHHHHHHHHHHHHcCCccCCchhhCCCc--HHHHHHHHHHHHhcchhccCcH
Confidence            34445555 788888887776      67   788999999999998556666544  2333445677777666555544


Q ss_pred             HHhhhHHHHHHHhcCCHHHHHhhchhhhcCC----ceeEEEecCCCCCCCCCCCceEEEEe-CCEEEEEeEeecccCCCC
Q 020535          137 LVHSSLAMLTIALCGSEEQKQKYLPSLAQLN----TIACWALTEPAYGSDASALNTTATKV-EGGWILEGQKRWIGNSTF  211 (325)
Q Consensus       137 ~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~----~~~~~a~tEp~~Gsd~~~~~~~a~~~-~~g~~lnG~K~~it~~~~  211 (325)
                      .++. .++.+|..+|+++|+ +|||++++|+    +++|+++|||++|||+..+.|+|+++ +|+|+|||+|+|+|++ .
T Consensus       114 ~~~~-~~~~~l~~~g~~~~~-~~l~~l~~g~~~~~~~~~~~~TEp~~GSD~~~~~T~A~~~~g~~~~LnG~K~f~s~a-~  190 (418)
T cd01154         114 TMTD-AAVYALRKYGPEELK-QYLPGLLSDRYKTGLLGGTWMTEKQGGSDLGANETTAERSGGGVYRLNGHKWFASAP-L  190 (418)
T ss_pred             HHHH-HHHHHHHHhCcHHHH-HHHHHHhCCCcccchhheeeecCCCcccchhhCeEEEEECCCCcEEEEEEEEEecCc-c
Confidence            4554 466789999988865 6999999997    89999999999999999999999999 8899999999999999 9


Q ss_pred             CCEEEEEEEeCC----CCCeEEEEEeCCCC-----CeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHH
Q 020535          212 ADVLVIFARNTT----TNQINGYLVKKDAP-----GLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTS  281 (325)
Q Consensus       212 Ad~~~v~a~~~~----~~~~~~~lv~~~~~-----Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~  281 (325)
                      ||+++|+||+++    ++++++|+||++.|     ||++.+.|+++|++++++++|.|+||.   +++||.. .|++.+.
T Consensus       191 Ad~~lv~Art~~~~~~~~gls~flVp~~~~~~~~~Gv~i~~~~~~~G~r~~~~~ev~f~dv~---~~~lG~~g~G~~~~~  267 (418)
T cd01154         191 ADAALVLARPEGAPAGARGLSLFLVPRLLEDGTRNGYRIRRLKDKLGTRSVATGEVEFDDAE---AYLIGDEGKGIYYIL  267 (418)
T ss_pred             cCEEEEEEECCCCCCCCCcEEEEEEeccCCCCCCCCeEecccccccCCCCCCeEEEEecCcC---ccccCCCCccHHHHH
Confidence            999999999863    35799999999875     999999999999999999999999983   7899875 5999999


Q ss_pred             hhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535          282 KVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       282 ~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~  325 (325)
                      ..++..|+  ++.++|     +++++++. ++|+++|++||+||+++
T Consensus       268 ~~l~~~R~~~aa~~~G-----~a~~al~~a~~ya~~R~~fg~~l~~~  309 (418)
T cd01154         268 EMLNISRLDNAVAALG-----IMRRALSEAYHYARHRRAFGKPLIDH  309 (418)
T ss_pred             HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhcCcCCCCchhhh
Confidence            99999999  777888     99999999 99999999999998763

AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.

>PTZ00457 acyl-CoA dehydrogenase; Provisional

Probab=100.00  E-value=1.5e-36  Score=293.63  Aligned_cols=239  Identities=22%  Similarity=0.278  Sum_probs=199.3

Q ss_pred             hhhhcccCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHH
Q 020535           16 ARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKL   95 (325)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l   95 (325)
                      .+++|.|+...+++++||.. +                 +++|+++..+   .|++..                  .+.+
T Consensus        19 ~~~lF~g~~~~~~~~pyP~~-~-----------------~~~~~~~~~~---~~~~~~------------------~~~~   59 (520)
T PTZ00457         19 AAGLFNFKIVPEEMFPYPCR-K-----------------LDGDEAENLQ---SLLEQI------------------RSND   59 (520)
T ss_pred             HHHhhCcccchhhcCCCCCC-C-----------------CCHHHHHHHH---HHHHHH------------------Hhch
Confidence            67899999999999976621 1                 2344443322   222211                  0047


Q ss_pred             HhC-cccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEE
Q 020535           96 GAL-RVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA  173 (325)
Q Consensus        96 ~~~-Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a  173 (325)
                      +++ ||+++ +|++|||.|++..+++.++|++++.+.+.+..+..|..++..+|..+|+++||++|||++++|+.++++|
T Consensus        60 ~~l~Gl~gl~vPeeyGG~Gl~~~~~a~v~Eelgr~~~s~~l~~~~h~~l~~~~L~~~Gt~eqker~Lp~lasGe~i~A~A  139 (520)
T PTZ00457         60 KILGNLYGARIATEYGGLGLGHTAHALIYEEVGTNCDSKLLSTIQHSGFCTYLLSTVGSKELKGKYLTAMSDGTIMMGWA  139 (520)
T ss_pred             HhcCCccCCCCChhhCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCcEEEEE
Confidence            799 99999 9999999999999999999999998877665454566566678888999999999999999999999999


Q ss_pred             ecCCCCCCCCCCCceEEEEe-CCEEEEEeEeecccCCCCCCEEEEEEEeCC----------CCCeEEEEEeCCCCCeEEe
Q 020535          174 LTEPAYGSDASALNTTATKV-EGGWILEGQKRWIGNSTFADVLVIFARNTT----------TNQINGYLVKKDAPGLTVT  242 (325)
Q Consensus       174 ~tEp~~Gsd~~~~~~~a~~~-~~g~~lnG~K~~it~~~~Ad~~~v~a~~~~----------~~~~~~~lv~~~~~Gv~~~  242 (325)
                      ++| ++|||+..+.|+|+++ +|+|+|||+|.|+ |+..||+++|+|++++          .+++++|+||++.|||++.
T Consensus       140 ltE-~aGSD~a~i~TtA~~~~gg~wvLNG~K~~t-~g~~Ad~~lV~Art~~~~~~~~g~~~~~git~FlV~~dapGVtv~  217 (520)
T PTZ00457        140 TEE-GCGSDISMNTTKASLTDDGSYVLTGQKRCE-FAASATHFLVLAKTLTQTAAEEGATEVSRNSFFICAKDAKGVSVN  217 (520)
T ss_pred             eCC-CCCCccccceeEEEEcCCCeEEEEEEEEEE-cCchhcEEEEEeecCCcccccccccCcCceEEEEEECCCCceEEe
Confidence            988 8999999999999986 4579999999965 8999999999999742          1368999999999999986


Q ss_pred             ccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhh
Q 020535          243 KIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSH  314 (325)
Q Consensus       243 ~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~  314 (325)
                      .            +++.|+||  |.+++||.. +|++.+...++.+|+  ++.++|     +++++++. ++|++.
T Consensus       218 ~------------~eV~FddV--P~~~vLG~~g~G~~~a~~~L~~~Rl~~aA~~vG-----ia~~ale~av~ya~~  274 (520)
T PTZ00457        218 G------------DSVVFENT--PAADVVGVVGEGFKDAMITLFTEQYLYAASLLG-----IMKRVVQELRGSNAE  274 (520)
T ss_pred             c------------CEEEECCC--CHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHh
Confidence            3            58999997  999999975 699999999999999  888999     99999999 999874

>cd01159 NcnH Naphthocyclinone hydroxylase

Probab=100.00  E-value=6.4e-36  Score=282.72  Aligned_cols=232  Identities=16%  Similarity=0.143  Sum_probs=192.2

Q ss_pred             hccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhhHHHHHHHhcC
Q 020535           73 EIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCG  151 (325)
Q Consensus        73 ~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~~~~~~~~~~~~~~~l~~~g  151 (325)
                      .+.+.+.+.|+.+.||.++|+.|++.||+++ +|++|||.|+++.+.+.++|++++.|+++++++..++ .....+..++
T Consensus         9 ~~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~s~a~~~~~~~-~~~~~~~~~~   87 (370)
T cd01159           9 LIRERAPEAERARRLPDEVVRALREIGFFRMFVPKRYGGLEGDFAEFAEAIATLAEACGSAAWVASIVA-THSRMLAAFP   87 (370)
T ss_pred             HHHHhHHHHHHcCCCCHHHHHHHHHCChHhhCCchhcCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHH-HHHHHHHhCC
Confidence            4777888899999999999999999999999 9999999999999999999999999999887654443 3456777889


Q ss_pred             CHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCCCCCEEEEEEEeCC---CCCeE
Q 020535          152 SEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTT---TNQIN  228 (325)
Q Consensus       152 ~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~~Ad~~~v~a~~~~---~~~~~  228 (325)
                      +++|++.|++.. .+  ..+        |  ...+.++|++++|||+|||+|.|||++..||+++|.+++++   ..+++
T Consensus        88 ~~~~~~~~~~~~-~~--~~~--------g--~~~~~t~A~~~~~gy~lnG~K~~it~~~~ad~~~v~a~~~~~~~~~~~~  154 (370)
T cd01159          88 PEAQEEVWGDGP-DT--LLA--------G--SYAPGGRAERVDGGYRVSGTWPFASGCDHADWILVGAIVEDDDGGPLPR  154 (370)
T ss_pred             HHHHHHHhCCCC-Cc--eEE--------e--eecCCceeEEeCCeEEEeccccCccCCCcCceeEeeeECCCCCCCCcce
Confidence            999999887742 11  111        1  12456799999999999999999999999999999999753   34689


Q ss_pred             EEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCCC-------ChH---HHHhhchhhhH--HHhhccc
Q 020535          229 GYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVN-------SFQ---DTSKVSEGEET--VWSTISS  296 (325)
Q Consensus       229 ~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~~-------g~~---~~~~~l~~~r~--aa~~~G~  296 (325)
                      +|+||++  ||++.+.|+.+|+++++++++.|+||+||++++|+..+       +..   .........|+  ++.++| 
T Consensus       155 ~~lV~~~--Gv~~~~~~~~~G~r~~~s~~v~f~~v~Vp~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~aa~~lG-  231 (370)
T cd01159         155 AFVVPRA--EYEIVDTWHVVGLRGTGSNTVVVDDVFVPEHRTLTAGDMMAGDGPGGSTPVYRMPLRQVFPLSFAAVSLG-  231 (370)
T ss_pred             EEEEEhH--HCEEecccccccccccCCCcEEEcceEcCccceecccccccCCCCCCCCccccCchHHHHHHHHHHHHHH-
Confidence            9999987  99999999999999999999999999999999997532       211   12223345555  778888 


Q ss_pred             CcHHHHHHHHHH-hhhhhhcccC---CCCCCCC
Q 020535          297 FSDQPAETCSDA-GKYSSHDSGW---LAPLQII  325 (325)
Q Consensus       297 ~~~~~a~~al~~-~~ya~~R~~f---G~pl~~~  325 (325)
                          +++++++. ++|+++|.+|   |+||+++
T Consensus       232 ----~a~~~l~~~~~~~~~R~~~~~~g~~i~~~  260 (370)
T cd01159         232 ----AAEGALAEFLELAGKRVRQYGAAVKMAEA  260 (370)
T ss_pred             ----HHHHHHHHHHHHhccCcccCCCccccccC
Confidence                99999999 9999999998   7788764

Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.

>cd00567 ACAD Acyl-CoA dehydrogenase

Probab=100.00  E-value=1.2e-34  Score=269.17  Aligned_cols=220  Identities=32%  Similarity=0.479  Sum_probs=195.9

Q ss_pred             HHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCCcccCCCCCCccHHHHHHHHHHHHccCCcchhHHH
Q 020535           58 EEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFIL  137 (325)
Q Consensus        58 ~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~p~~~GG~g~s~~~~~~v~e~la~~~~s~~~~~~  137 (325)
                      +++++++.+++|+.+++.+...+.++   ++...|+.+++.|++                                    
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~------------------------------------   42 (327)
T cd00567           2 EQRELRDSAREFAAEELEPYARERRE---TPEEPWELLAELGLL------------------------------------   42 (327)
T ss_pred             hHHHHHHHHHHHHHHhccccHHhHHh---hCCCCHHHHHHHHHH------------------------------------
Confidence            56789999999999999988886555   444556667777776                                    


Q ss_pred             HhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCCCCCEEEE
Q 020535          138 VHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVI  217 (325)
Q Consensus       138 ~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~~Ad~~~v  217 (325)
                          +++.+|..+|+++|+++|++.+.+|+.++++++|||.+|||...+.++++++++||+|||+|.|+|++..||+++|
T Consensus        43 ----~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~sE~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv  118 (327)
T cd00567          43 ----LGAALLLAYGTEEQKERYLPPLASGEAIAAFALTEPGAGSDLAGIRTTARKDGDGYVLNGRKIFISNGGDADLFIV  118 (327)
T ss_pred             ----hchHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCchhhCEeEEEEeCCEEEEEEEEEEecCCccCCEEEE
Confidence                3345778889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCC----CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhchhhhH--H
Q 020535          218 FARNTT----TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVSEGEET--V  290 (325)
Q Consensus       218 ~a~~~~----~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~~~r~--a  290 (325)
                      ++++++    ++++.+|+||++.|||++.+.|+++|+++++++.+.|+||+||.+++++.. .++......+...|+  +
T Consensus       119 ~a~~~~~~~~~~~~~~~lvp~~~~Gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~a  198 (327)
T cd00567         119 LARTDEEGPGHRGISAFLVPADTPGVTVGRIWDKMGMRGSGTGELVFDDVRVPEDNLLGEEGGGFELAMKGLNVGRLLLA  198 (327)
T ss_pred             EEEeCCCCCCCCceEEEEEeCCCCCeEeccccccccCCCCceEEEEECCEEecHHHcCCCCCchHHHHHHHHHHHHHHHH
Confidence            999853    246889999999999999999999999999999999999999999999875 477777888888887  8


Q ss_pred             HhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535          291 WSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       291 a~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~  325 (325)
                      +.++|     +++++++. ++|+++|++||+||+++
T Consensus       199 a~~~G-----~a~~al~~~~~~~~~r~~~g~~~~~~  229 (327)
T cd00567         199 AVALG-----AARAALDEAVEYAKQRKQFGKPLAEF  229 (327)
T ss_pred             HHHHH-----HHHHHHHHHHHHHHhccccCCccccc
Confidence            88888     99999999 99999999999999864

Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob

>PRK11561 isovaleryl CoA dehydrogenase; Provisional

Probab=100.00  E-value=4.2e-34  Score=278.37  Aligned_cols=220  Identities=16%  Similarity=0.148  Sum_probs=179.9

Q ss_pred             hHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHH-HccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCC
Q 020535           90 HVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEI-ARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLN  167 (325)
Q Consensus        90 ~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~l-a~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~  167 (325)
                      ++++.+.+.|+.++ .++++| .+.. .. ..+.+.+ +.......  +.+..+.++..+..+|+++|+++|+|++++|+
T Consensus        90 ~~~~~~~~~g~~~~~~~~~~~-~~~~-~~-~~~~~~l~~~~~~g~~--cp~~mT~~a~~~l~~~~~e~~~~~lp~l~sg~  164 (538)
T PRK11561         90 LLMQGLCANRVHNLAWEEDAR-SGAF-VA-RAARFMLHAQVEAGTL--CPITMTFAATPLLLQMLPAPFQDWLTPLLSDR  164 (538)
T ss_pred             HHHHHHHHcCCccCCCCCccC-chHH-HH-HHHHHHHHhhhhHHhh--chHHHHHHHHHHHHhcCHHHHHHHHHHHhCCC
Confidence            56667778999988 666665 2221 12 2222333 33332222  22322345567777899999999999999997


Q ss_pred             -------------ceeEEEecCCCCCCCCCCCceEEEEe-CCEEEEEeEeecccCCCCCCEEEEEEEeCCCCCeEEEEEe
Q 020535          168 -------------TIACWALTEPAYGSDASALNTTATKV-EGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVK  233 (325)
Q Consensus       168 -------------~~~~~a~tEp~~Gsd~~~~~~~a~~~-~~g~~lnG~K~~it~~~~Ad~~~v~a~~~~~~~~~~~lv~  233 (325)
                                   +++++++|||++|||+..+.|+|+++ +|+|+|||+|+||| ++.||+++|+||++  +++++|+||
T Consensus       165 ~~~~~~~~~~~~~~~~~~a~TEp~~GSDv~~~~T~A~~~~gg~w~LnG~K~fiS-a~~AD~~lVlArt~--~Gls~FlVp  241 (538)
T PRK11561        165 YDSHLLPGGQKRGLLIGMGMTEKQGGSDVLSNTTRAERLADGSYRLVGHKWFFS-VPQSDAHLVLAQAK--GGLSCFFVP  241 (538)
T ss_pred             cccccccchhhhhheeEEEecCCCCCCchhhCeeEEEECCCCeEEEEEEEEEEE-chhhCEEEEEEEEC--CceEEEEEE
Confidence                         45699999999999999999999995 56799999999999 68899999999986  589999999


Q ss_pred             CCCC-----CeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhchhhhH--HHhhcccCcHHHHHHH
Q 020535          234 KDAP-----GLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVSEGEET--VWSTISSFSDQPAETC  305 (325)
Q Consensus       234 ~~~~-----Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~~~r~--aa~~~G~~~~~~a~~a  305 (325)
                      ++.|     ||++.+.++++|+|++++++|.|+||   .+++||+. .|++.+...++.+|+  ++.++|     +++++
T Consensus       242 ~~~p~g~~nGv~i~rl~~klG~r~~~t~ev~f~dv---~~~llG~~g~G~~~i~~~l~~~Rl~~a~~a~G-----~a~~A  313 (538)
T PRK11561        242 RFLPDGQRNAIRLERLKDKLGNRSNASSEVEFQDA---IGWLLGEEGEGIRLILKMGGMTRFDCALGSHG-----LMRRA  313 (538)
T ss_pred             CCCCCCCCCceEEecccccccCCCCceeEEEECCH---HHHHCCCCCchHHHHHHHHHHHHHHHHHHHHH-----HHHHH
Confidence            9988     79999999999999999999999999   37899985 499999999999999  777888     99999


Q ss_pred             HHH-hhhhhhcccCCCCCCCC
Q 020535          306 SDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       306 l~~-~~ya~~R~~fG~pl~~~  325 (325)
                      ++. ++|+++|++||+||+++
T Consensus       314 l~~A~~yA~~R~~FG~~L~~~  334 (538)
T PRK11561        314 FSVAIYHAHQRQVFGKPLIEQ  334 (538)
T ss_pred             HHHHHHHHHhCccCCCccccC
Confidence            999 99999999999999874

>KOG1469 consensus Predicted acyl-CoA dehydrogenase [General function prediction only]

Probab=100.00  E-value=8.2e-35  Score=250.33  Aligned_cols=224  Identities=20%  Similarity=0.225  Sum_probs=196.3

Q ss_pred             HHhCcccCC-cc---cCCCCCCccHHHHHHHHHHHHccCCcchhH-HHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCce
Q 020535           95 LGALRVAGG-TI---KGYGCPGHSVTGAAIAIAEIARVDASCSTF-ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTI  169 (325)
Q Consensus        95 l~~~Gl~~~-~p---~~~GG~g~s~~~~~~v~e~la~~~~s~~~~-~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~  169 (325)
                      .+.+|++.+ +|   ..| |.|++..+++.+.|.+++.-.+.-.+ ...+....+..|.+||+++||.+||-+|++|+..
T Consensus        36 aK~eGlWNLFlp~~~qky-g~GLtnveYa~icElmGrs~~APeVfNC~APDTGNMEvl~rYGseeQks~WL~PLLeG~ir  114 (392)
T KOG1469|consen   36 AKVEGLWNLFLPAVSQKY-GAGLTNVEYAHICELMGRSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKSQWLIPLLEGNIR  114 (392)
T ss_pred             HHhcchHHhhhHHHHHhh-ccCccchhHHHHHHHhccccccchhccCCCCCCCCeeehhhhCCHHHHhhHhHHHhcCCce
Confidence            345899999 77   455 57999999999999999976553332 2344445678999999999999999999999999


Q ss_pred             eEEEecCCCC-CCCCCCCceEEEEeCCEEEEEeEeecccCCC--CCCEEEEEEEeCCC-----CCeEEEEEeCCCCCeEE
Q 020535          170 ACWALTEPAY-GSDASALNTTATKVEGGWILEGQKRWIGNST--FADVLVIFARNTTT-----NQINGYLVKKDAPGLTV  241 (325)
Q Consensus       170 ~~~a~tEp~~-Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~--~Ad~~~v~a~~~~~-----~~~~~~lv~~~~~Gv~~  241 (325)
                      .|||+|||+. .||+.++++..+++++-|+|||+|+|+||+.  .|.+.+++.+++.+     .+.++.|||.++|||.+
T Consensus       115 ScFaMTEP~VASSDATNIe~SI~r~~~~YvINg~KWw~sga~~PkCrv~i~mGkt~~~~~~rhkQqSmiLVpM~TpGvki  194 (392)
T KOG1469|consen  115 SCFAMTEPDVASSDATNIECSIRRDGDSYVINGKKWWISGAGDPKCRIAIFMGKTDNTSASRHKQQSMILVPMNTPGVKI  194 (392)
T ss_pred             eeEeecCCcccccccccceEEEEEcCCEEEEecceeeecCCCCCceEEEEEecccCCCccchhhcccEEEEecCCCCeeE
Confidence            9999999995 9999999999999999999999999999985  47788899998643     56899999999999999


Q ss_pred             eccCCccCcccc--ceeeEEEeeeeeCCCCCc-CCCCChHHHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhc
Q 020535          242 TKIENKIGLRIV--QNGDILLKKVFVPDEDRL-PGVNSFQDTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHD  315 (325)
Q Consensus       242 ~~~~~~~G~~~~--~~~~v~f~~v~Vp~~~~l-g~~~g~~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R  315 (325)
                      .++...+|....  +..+++|+||+||..+++ |++.||.+.+-.+.-+|+  |+-.+|     .++++++. .+.+.+|
T Consensus       195 iRpltVfG~~DapgGH~Ei~F~~VrVP~~NmlLGeGrGFEIaQGRLGPGRiHHcMRliG-----~aERal~lm~~R~~sR  269 (392)
T KOG1469|consen  195 IRPLTVFGYTDAPGGHFEIHFENVRVPATNMLLGEGRGFEIAQGRLGPGRIHHCMRLIG-----LAERALQLMKERALSR  269 (392)
T ss_pred             eeeeeeeccccCCCCcceEEEEEEEeeccceeecCCCcceeeccccCCcHHHHHHHHhh-----HHHHHHHHHHHHHHHH
Confidence            999999998655  467899999999999986 556799999999999999  999999     99999999 9999999


Q ss_pred             ccCCCCCCC
Q 020535          316 SGWLAPLQI  324 (325)
Q Consensus       316 ~~fG~pl~~  324 (325)
                      ..|||+|..
T Consensus       270 iaFgk~l~q  278 (392)
T KOG1469|consen  270 IAFGKKLVQ  278 (392)
T ss_pred             HHhcchhhh
Confidence            999999864

>cd01150 AXO Peroxisomal acyl-CoA oxidase

Probab=100.00  E-value=4.7e-34  Score=284.27  Aligned_cols=203  Identities=24%  Similarity=0.337  Sum_probs=182.9

Q ss_pred             cHHHHHHHHHHHHccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEe
Q 020535          114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV  193 (325)
Q Consensus       114 s~~~~~~v~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~  193 (325)
                      ++.+...+.|++++.+.+++..+.+|..+....|..+|+++|+++|+|.+.+|+.++|+|+|||++|||+..++|+|+++
T Consensus        80 ~~~~~~~~~e~l~~~d~~~~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~~~~g~~ig~~a~TE~ghGSdv~~leTtAt~d  159 (610)
T cd01150          80 DPEKMLALTNSLGGYDLSLGAKLGLHLGLFGNAIKNLGTDEHQDYWLQGANNLEIIGCFAQTELGHGSNLQGLETTATYD  159 (610)
T ss_pred             CHHHHHHHHHHHhccCccccceeeehHHHHHHHHHHhCCHHHHHHHHHHHhccChheeeeccccCcCcCcccceeEEEEC
Confidence            46677888999999998876656677767777899999999999999999999999999999999999999999999999


Q ss_pred             C--CEEEEE-----eEeecccCCC-CCCEEEEEEEeC---CCCCeEEEEEeCC-------CCCeEEeccCCccCccccce
Q 020535          194 E--GGWILE-----GQKRWIGNST-FADVLVIFARNT---TTNQINGYLVKKD-------APGLTVTKIENKIGLRIVQN  255 (325)
Q Consensus       194 ~--~g~~ln-----G~K~~it~~~-~Ad~~~v~a~~~---~~~~~~~~lv~~~-------~~Gv~~~~~~~~~G~~~~~~  255 (325)
                      +  ++|+||     |+|+||+|+. .|++++|+||+.   ++.|+++|+||.+       .|||++.+.+.++|+++.++
T Consensus       160 ~~t~efvLntp~~~g~K~wi~~~~~~a~~~vV~Arl~~~g~~~Gv~~FlVp~rd~~~~~~~pGV~i~~~~~k~G~~g~dn  239 (610)
T cd01150         160 PLTQEFVINTPDFTATKWWPGNLGKTATHAVVFAQLITPGKNHGLHAFIVPIRDPKTHQPLPGVTVGDIGPKMGLNGVDN  239 (610)
T ss_pred             CCCCeEEECCCCCCceEECccCcccCCCEEEEEEEeccCCCCCCeEEEEEeccccccCCCCCCeEEeecccccCCCCCCe
Confidence            8  889999     9999999985 499999999973   2357999999963       39999999999999999999


Q ss_pred             eeEEEeeeeeCCCCCcCC----------------C-CChHHHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhc
Q 020535          256 GDILLKKVFVPDEDRLPG----------------V-NSFQDTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHD  315 (325)
Q Consensus       256 ~~v~f~~v~Vp~~~~lg~----------------~-~g~~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R  315 (325)
                      +.+.|+||+||.+++|++                + .|+..+...+..+|+  ++.++|     ++++|++. ++|+++|
T Consensus       240 g~l~Fd~vrVP~~nlL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~~~~gRl~ia~~a~g-----~~~~al~iAi~Ya~~R  314 (610)
T cd01150         240 GFLQFRNVRIPRENLLNRFGDVSPDGTYVSPFKDPNKRYGAMLGTRSGGRVGLIYDAAM-----SLKKAATIAIRYSAVR  314 (610)
T ss_pred             EEEEEeeeEecHHHhcccccccCCCCceecCCCchhhHHHHHHHHHHhhHHHHHHHHHH-----HHHHHHHHHHHHHHee
Confidence            999999999999999985                2 367788889999998  888888     99999999 9999999


Q ss_pred             ccCCCC
Q 020535          316 SGWLAP  321 (325)
Q Consensus       316 ~~fG~p  321 (325)
                      +|||+|
T Consensus       315 ~qfg~~  320 (610)
T cd01150         315 RQFGPK  320 (610)
T ss_pred             eecCCC
Confidence            999999

Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.

>PTZ00460 acyl-CoA dehydrogenase; Provisional

Probab=100.00  E-value=9e-33  Score=275.18  Aligned_cols=185  Identities=20%  Similarity=0.296  Sum_probs=163.4

Q ss_pred             HHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEe--CCEEEEE-----eEeecccC
Q 020535          136 ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE-----GQKRWIGN  208 (325)
Q Consensus       136 ~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~--~~g~~ln-----G~K~~it~  208 (325)
                      +.+|..+....|..+|+++|+++|||++.+|+.++|+|+|||++|||+..++|+|+++  +++|+||     |+|+||+|
T Consensus        95 ~~vh~~~~~~~I~~~GT~eQk~~~Lp~~~~ge~ig~~A~TEpghGSdv~~leTtAt~d~~~defvLntPt~~g~K~wi~~  174 (646)
T PTZ00460         95 STVHFAMVIPAFQVLGTDEQINLWMPSLLNFEIVGCYAQTELGHGSDVQNLETTATYDKQTNEFVIHTPSVEAVKFWPGE  174 (646)
T ss_pred             EEeeHhhHHHHHHHhCCHHHHHHHHHHHhCCChheeeeecCCCccCCcccceEEEEEcCCCCEEEECCCCCCeEEEccCC
Confidence            3456555566788899999999999999999999999999999999999999999996  5679998     99999998


Q ss_pred             -CCCCCEEEEEEEeCC---CCCeEEEEEeC-------CCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCC----
Q 020535          209 -STFADVLVIFARNTT---TNQINGYLVKK-------DAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG----  273 (325)
Q Consensus       209 -~~~Ad~~~v~a~~~~---~~~~~~~lv~~-------~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~----  273 (325)
                       +..||+++|+||+..   +.|+++|+||.       ..|||++.+...++|+++.+++.+.|+||+||.+++||.    
T Consensus       175 ~g~~A~~~vV~Arl~~~~~~~Gi~~FlV~ird~~~~~~~pGV~vg~~~~k~G~~~~dng~l~Fd~VrVP~~nlLg~~~~v  254 (646)
T PTZ00460        175 LGFLCNFALVYAKLIVNGKNKGVHPFMVRIRDKETHKPLQGVEVGDIGPKMGYAVKDNGFLSFDHYRIPLDSLLARYIKV  254 (646)
T ss_pred             CCCCCCEEEEEEEECcCCCCCceEEEEEeccccCCCCCCCCeEEeccccccCcCCCCceEEEeceEEECHHHhCCccccc
Confidence             688999999999842   35799999993       249999999999999999999999999999999999985    


Q ss_pred             --CC-----C-hHHHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCC------CCCCC
Q 020535          274 --VN-----S-FQDTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLA------PLQII  325 (325)
Q Consensus       274 --~~-----g-~~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~------pl~~~  325 (325)
                        ++     | ++.....+..+|+  ++.++|     ++++|++. ++|+++|+|||+      ||+++
T Consensus       255 ~~~G~~~~~g~~~~~~~~l~~~R~~iaa~~~g-----~a~~Al~iAvrYa~~R~QFg~~~~~E~pI~~y  318 (646)
T PTZ00460        255 SEDGQVERQGNPKVSYASMMYMRNLIIDQYPR-----FAAQALTVAIRYSIYRQQFTNDNKQENSVLEY  318 (646)
T ss_pred             CCCCccccCCcHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHccccCCCCCCCCCcHhhh
Confidence              11     3 6777888888998  777888     99999999 999999999998      88764

>PLN02443 acyl-coenzyme A oxidase

Probab=99.97  E-value=7.9e-31  Score=261.72  Aligned_cols=182  Identities=25%  Similarity=0.343  Sum_probs=158.2

Q ss_pred             HHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEe--CCEEEEE-----eEeecccCC
Q 020535          137 LVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE-----GQKRWIGNS  209 (325)
Q Consensus       137 ~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~--~~g~~ln-----G~K~~it~~  209 (325)
                      .+|..+....|..+|+++|+++|||++.+|+.++|+|+|||++|||+..+.|+|+++  +++|+||     |+|+||+|+
T Consensus       100 ~~~~~~f~~~I~~~GT~eQk~~~L~~~~~g~iig~fA~TE~ghGSdv~~leTtAt~d~~~~efvIntP~~~g~K~wig~~  179 (664)
T PLN02443        100 DLHWGMFVPAIKGQGTEEQQKKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHSPTLTSSKWWPGGL  179 (664)
T ss_pred             eehHhHHHHHHHHhCCHHHHHHHHHHHhCCChheEEEecCCCcccchhhCeEEEEEeCCCCEEEECCCCCCEEEEeecCC
Confidence            355555566788899999999999999999999999999999999999999999998  5779998     999999997


Q ss_pred             -CCCCEEEEEEEeC---CCCCeEEEEEeCC-------CCCeEEeccCCccC---ccccceeeEEEeeeeeCCCCCcCCC-
Q 020535          210 -TFADVLVIFARNT---TTNQINGYLVKKD-------APGLTVTKIENKIG---LRIVQNGDILLKKVFVPDEDRLPGV-  274 (325)
Q Consensus       210 -~~Ad~~~v~a~~~---~~~~~~~~lv~~~-------~~Gv~~~~~~~~~G---~~~~~~~~v~f~~v~Vp~~~~lg~~-  274 (325)
                       ..|++++|+||+.   .+.|+++|+||.+       .|||++.+...++|   +++.+++.+.|+||+||.+++|++. 
T Consensus       180 ~~~A~~~vV~Arl~~~~~~~Gv~~FlVp~r~~~~~~~~PGV~vgd~g~K~G~~~~~~~dng~l~Fd~VrVP~~nlLg~~~  259 (664)
T PLN02443        180 GKVSTHAVVYARLITNGKDHGIHGFIVQLRSLDDHSPLPGVTVGDIGMKFGNGAYNTMDNGFLRFDHVRIPRDQMLMRLS  259 (664)
T ss_pred             cccCCEEEEEEEECCCCCCCCeEEEEEecCCcCcCCCCCCeEEeccccccCcccCCCCcceEEEeCcEEECHHHcCCccc
Confidence             6899999999974   2357999999975       79999999999999   5568899999999999999999752 


Q ss_pred             ----CCh--------HHHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCC
Q 020535          275 ----NSF--------QDTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQ  323 (325)
Q Consensus       275 ----~g~--------~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~  323 (325)
                          +|.        +.....+..+|+  ++.++|     ++++|++. ++|+++|+|||+|++
T Consensus       260 ~v~~~G~~~~~~~~~~~~~~~l~~~R~~i~a~a~g-----~~~~Al~iAvrYa~~R~QFg~~~~  318 (664)
T PLN02443        260 KVTREGKYVQSDVPRQLVYGTMVYVRQTIVADAST-----ALSRAVCIATRYSAVRRQFGSQDG  318 (664)
T ss_pred             ccCCCCceecccchHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHccEeCCCCCC
Confidence                221        234456777887  777788     99999999 999999999999987

>KOG0135 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.90  E-value=1.9e-23  Score=195.54  Aligned_cols=223  Identities=22%  Similarity=0.315  Sum_probs=186.9

Q ss_pred             hHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCc
Q 020535           90 HVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNT  168 (325)
Q Consensus        90 ~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~  168 (325)
                      .-|..|.+.|.+.. .-+. +  --...-...++|.++..|.|++.-+.+|..+....+..+|++..++ |+...-+-+.
T Consensus        81 ~r~~~l~~~gv~~~~~~~~-~--~~~~~k~~al~E~lg~yd~sls~K~~lh~~lfg~AV~~~GT~rH~~-yi~~~~n~ev  156 (661)
T KOG0135|consen   81 KRIKRLVELGVFKFWLVED-G--PEAELKKFALTEALGIYDQSLSAKLGLHFLLFGNAVKSMGTKRHHD-YIQKTENYEV  156 (661)
T ss_pred             HHHHHHHHhccCcceeecC-c--hHHHHHHHHHHHHHhhcCcchhhhhhhhhhhhhHHHHhhccHHHHH-HHhhhhccee
Confidence            45666676777665 2121 0  0134467788999999999999989999888888999999999998 9999999999


Q ss_pred             eeEEEecCCCCCCCCCCCceEEEEe--CCEEEEE-----eEeecccCCC-CCCEEEEEEEe---CCCCCeEEEEEeCC--
Q 020535          169 IACWALTEPAYGSDASALNTTATKV--EGGWILE-----GQKRWIGNST-FADVLVIFARN---TTTNQINGYLVKKD--  235 (325)
Q Consensus       169 ~~~~a~tEp~~Gsd~~~~~~~a~~~--~~g~~ln-----G~K~~it~~~-~Ad~~~v~a~~---~~~~~~~~~lv~~~--  235 (325)
                      ++|||+||.++||+...++|+|+.+  .+.|+||     -.|.||.|++ .|++.+|+++.   +.+.|+..|+|+..  
T Consensus       157 ~gcfamTEl~HGSNt~~I~TtatyDP~t~EfVinTP~~~A~K~WiGn~a~~athavvfa~L~~~g~n~G~H~FiiqIRdp  236 (661)
T KOG0135|consen  157 KGCFAMTELGHGSNTKGIQTTATYDPTTEEFVINTPDFSAIKCWIGNAAKHATHAVVFAQLHVPGQNHGLHGFIIQIRDP  236 (661)
T ss_pred             eeeEEEeeecCCccccceeeeeeecCCCCeeEecCCcHHHHHHHhccccccceEEEEEEEeeecCccCceeeEEEEeecc
Confidence            9999999999999999999999998  5569999     6799999975 58899999987   33568999999954  


Q ss_pred             -----CCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCC-----CCC------------hHHHHhhchhhhH--HH
Q 020535          236 -----APGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-----VNS------------FQDTSKVSEGEET--VW  291 (325)
Q Consensus       236 -----~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~-----~~g------------~~~~~~~l~~~r~--aa  291 (325)
                           .|||+|.+.-.+.|+.|..++-+.|+||+||.+++|.+     ++|            +-.....|..+|+  +.
T Consensus       237 kT~~t~PgV~igD~G~K~GlnGVDNG~l~F~nvRIPRenLLNr~gDVtpDG~YvSs~k~~~qrfgA~L~~Ls~GRvgIa~  316 (661)
T KOG0135|consen  237 KTLQTLPGVRIGDCGHKIGLNGVDNGFLWFDNVRIPRENLLNRFGDVTPDGKYVSSFKDPSQRFGASLGSLSSGRVGIAS  316 (661)
T ss_pred             cccCCCCCceecccccccccccccCceEEEecccCchHHHhhhccCcCCCCeeeccCCChhhhhchhhcccccchhHHHH
Confidence                 47999999999999999999999999999999999954     122            3445667778898  77


Q ss_pred             hhcccCcHHHHHHHHHH-hhhhhhcccCCCC
Q 020535          292 STISSFSDQPAETCSDA-GKYSSHDSGWLAP  321 (325)
Q Consensus       292 ~~~G~~~~~~a~~al~~-~~ya~~R~~fG~p  321 (325)
                      .++|     .++-++.+ ++|...|+|||.+
T Consensus       317 ~ai~-----~lkla~tIAIRYS~sRRQFGP~  342 (661)
T KOG0135|consen  317 SAIG-----ALKLALTIAIRYSLSRRQFGPT  342 (661)
T ss_pred             HHHH-----HHHHHHHHhhhhHHhHhhhCCC
Confidence            7888     99999999 9999999999965

>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1

Probab=99.82  E-value=2.7e-20  Score=146.13  Aligned_cols=112  Identities=45%  Similarity=0.525  Sum_probs=105.0

Q ss_pred             CHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchh
Q 020535           56 TSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCST  134 (325)
Q Consensus        56 ~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~~~  134 (325)
                      |++++++++.+++|+++++.|...++|+++.+|+++|+++++.||+++ +|++|||.|++..+.+.+++++++.+.++++
T Consensus         1 t~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~G~~~~~~p~~~GG~~~~~~~~~~~~e~l~~~~~~~~~   80 (113)
T PF02771_consen    1 TEEQQALREEAREFAEEEIAPHAAEWDEDGRFPREVWRALGEAGLLGLAVPEEYGGLGLSPLELAIVLEELARADASLAF   80 (113)
T ss_dssp             SHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCHHHHHHHHHHTTTTSTTSCGGGTSEB-THHHHHHHHHHHHHHTHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHchHHHHHHHHhCCCCHHHHHHHHHHHHhhhhccccccCcchhhhhHHHHHHhhhhhcccccc
Confidence            578999999999999999999999998888999999999999999999 9999999999999999999999999999888


Q ss_pred             HHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCC
Q 020535          135 FILVHSSLAMLTIALCGSEEQKQKYLPSLAQLN  167 (325)
Q Consensus       135 ~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~  167 (325)
                      .+.+|+.+++.+|..+|+++||++|||++++|+
T Consensus        81 ~~~~~~~l~~~~i~~~gs~eq~~~~lp~~~~Ge  113 (113)
T PF02771_consen   81 ALGVHQSLGAPPIAKFGSEEQKEKWLPRLASGE  113 (113)
T ss_dssp             HHHHHHHCHHHHHHHHSHHHHHHHHHHHHHTTS
T ss_pred             hhhhhhHHHHHHHHHHCCHHHHHHHhHHHhCCC
Confidence            888887777789999999999999999999986

3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain, on dimerisation, the N-terminal of one molecule extends into the other dimer and lies on the surface of the molecule.; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2WBI_B 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2DVL_A 1UKW_B 3MDD_B 1UDY_C 3MDE_B ....

>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component

Probab=99.69  E-value=5.1e-16  Score=150.29  Aligned_cols=168  Identities=19%  Similarity=0.197  Sum_probs=130.4

Q ss_pred             HhcCCH--HHHHhhchhhhcCCceeEEEecCCCC-CC-------CCCCCceEEEEeCCEEEEEeEeecccCCCCCCEEEE
Q 020535          148 ALCGSE--EQKQKYLPSLAQLNTIACWALTEPAY-GS-------DASALNTTATKVEGGWILEGQKRWIGNSTFADVLVI  217 (325)
Q Consensus       148 ~~~g~~--~q~~~~l~~l~~g~~~~~~a~tEp~~-Gs-------d~~~~~~~a~~~~~g~~lnG~K~~it~~~~Ad~~~v  217 (325)
                      ..++++  +-..+|+..+.+.++..+-+++.|.. =|       |+.-.--..+++++||+|||.|.|+|++ .||+++|
T Consensus       119 ~~~~~~y~~n~~~y~~~~~~~dl~~~~a~~dp~~dRs~~~~~~~d~~~~~~Vve~~~dGiVV~GaK~~~T~~-~ad~~~V  197 (477)
T TIGR02309       119 GKSNSEFAENVRNYYEYLRDNDLALTHALTNPQVNRAKPPSEQPDPYIALGVVEQTDKGVIVRGARMTATFP-IADEILI  197 (477)
T ss_pred             hhcCcHHHHHHHHHHHHHHHhCceeeccccCCCCCCCCChhhcCCCCcceeEEEEcCCCEEEeCHHHhhhhc-ccceEEE
Confidence            444443  34568899999999999999998863 11       2221112345678899999999999996 9999999


Q ss_pred             EEEeCCC----CC--eEEEEEeCCCCCeEEeccCCccCcccc-----------ceeeEEEeeeeeCCCCC--cCCC----
Q 020535          218 FARNTTT----NQ--INGYLVKKDAPGLTVTKIENKIGLRIV-----------QNGDILLKKVFVPDEDR--LPGV----  274 (325)
Q Consensus       218 ~a~~~~~----~~--~~~~lv~~~~~Gv~~~~~~~~~G~~~~-----------~~~~v~f~~v~Vp~~~~--lg~~----  274 (325)
                      +++++..    ++  .+.|+||.++||+++.....++|.++.           ..+.|.||||+||.+++  +|..    
T Consensus       198 ~~~~~~~~~~~~~~ya~~F~VP~dtpGl~~i~r~~~~~~~~~~D~plssrfde~da~vvFDdV~VPwe~VF~~g~~e~a~  277 (477)
T TIGR02309       198 FPSTVLKAGAEKDPYALAFAIPTNTPGLHFVCREALDGGDSPFDHPLSSRFEEMDALVIFDDVLVPWERIFILGDVELCN  277 (477)
T ss_pred             eccCCCCCccCCCCeEEEEEeeCCCCceEEEeCCccCCCCCcccCccccccCCCeEEEEeCceeccHHHhhhcCCHHHHH
Confidence            9987431    23  789999999999999999999998876           67999999999999999  7764    


Q ss_pred             CChHHHHhhchhhhHHHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535          275 NSFQDTSKVSEGEETVWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       275 ~g~~~~~~~l~~~r~aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~  325 (325)
                      .++......   ...+++++|     .+..+++. +.|+++ .+||.++.++
T Consensus       278 ~~f~~~~~~---~~~~~~~~g-----~~~~~ld~~~g~a~~-~a~~~gi~~~  320 (477)
T TIGR02309       278 NAYAATGAV---NHMAHQVVA-----LKIAKTEAFLGVAAL-MAEGIGADGF  320 (477)
T ss_pred             HHHHHHHHH---HHHHHHHHH-----HHHHHHHHHHHHHHH-HHHhhCcccc
Confidence            244333221   111788889     99999999 999999 9999998764

This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).

>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1

Probab=99.65  E-value=2.9e-16  Score=105.57  Aligned_cols=52  Identities=44%  Similarity=0.742  Sum_probs=47.4

Q ss_pred             EEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCCCCCEEEEEEEeC
Q 020535          171 CWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT  222 (325)
Q Consensus       171 ~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~~Ad~~~v~a~~~  222 (325)
                      |+|+|||++|+|+..++|+|+++++||+|||+|.||+|++.||+++|+||++
T Consensus         1 ~~a~tE~~~g~d~~~~~t~a~~~~~~~~L~G~K~~v~~~~~a~~~~v~ar~d   52 (52)
T PF02770_consen    1 AFALTEPGAGSDLAAVETTARRDGDGYVLNGEKRFVSNAPDADWFLVFARTD   52 (52)
T ss_dssp             EEE--BTTBSSSGGG-SSEEEEETTEEEEEEEEEEEETTTTESEEEEEEEES
T ss_pred             CEEEcCCCCCCCcccCEEEeecccceEEEeeEEEEECCcCccCEEEEEEEEC
Confidence            6899999999999999999999999999999999999999999999999974

3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....

>KOG0136 consensus Acyl-CoA oxidase [Lipid transport and metabolism]

Probab=99.58  E-value=9e-15  Score=140.54  Aligned_cols=180  Identities=22%  Similarity=0.272  Sum_probs=141.0

Q ss_pred             HHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCE--EEEE-----eEeecccC
Q 020535          136 ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGG--WILE-----GQKRWIGN  208 (325)
Q Consensus       136 ~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g--~~ln-----G~K~~it~  208 (325)
                      +..|..+-...|..-|++||.++|+++-.+.++++|+|.||.++|+++..+.|+|+.+...  |+||     ..|+|..+
T Consensus       111 l~lH~~MFvp~l~~q~t~EQ~~~Wl~~a~~~~IiGtYAQTElGHGTnl~~LET~AtyD~~T~eFVl~TPt~ta~KWWPGg  190 (670)
T KOG0136|consen  111 LALHYGMFVPTLKGQGTDEQQEKWLSRALNMEIIGTYAQTELGHGTNLRGLETTATYDPKTQEFVLNTPTLTATKWWPGG  190 (670)
T ss_pred             hhhhhhhhhhHhhcCCCHHHHHHHHHhcccceEEEeehhhhhcccccccccceeeeecCCcceEEecCCCcceecccCCc
Confidence            4466666667888899999999999999999999999999999999999999999998765  9988     89999976


Q ss_pred             C-CCCCEEEEEEEe---CCCCCeEEEEEeCC-------CCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCC----
Q 020535          209 S-TFADVLVIFARN---TTTNQINGYLVKKD-------APGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG----  273 (325)
Q Consensus       209 ~-~~Ad~~~v~a~~---~~~~~~~~~lv~~~-------~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~----  273 (325)
                      . ..|++.+|.|+.   +..-|+..|+||..       .|||+++++-.+||..+..++-+.|+||+||.+++|-+    
T Consensus       191 LG~ssnhAvV~AqL~~~gk~~G~h~FiV~lRd~~th~pL~Gi~iGDIG~Kmg~ng~dNGfL~f~nvRIPR~nmLmr~~kV  270 (670)
T KOG0136|consen  191 LGKSSNHAVVVAQLITKGKCYGPHPFIVQLRDEDTHKPLPGITVGDIGPKMGFNGVDNGFLGFDNVRIPRTNMLMRHAKV  270 (670)
T ss_pred             cccccchheeeeeeeecccccccceeEEEccCccccCCCCCCeecCCCccccccCCccceeeecceeechHhhhhhhhee
Confidence            4 568899999997   33457899999954       47999999999999999999999999999999999954    


Q ss_pred             -CCChHHH--Hhhc-----hhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCC
Q 020535          274 -VNSFQDT--SKVS-----EGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLA  320 (325)
Q Consensus       274 -~~g~~~~--~~~l-----~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~  320 (325)
                       ++|-.+.  ...+     -..|.  ..-..-     +...|.-+ ++|+..|+|+.-
T Consensus       271 ~~dGtyv~p~~~~l~Y~tMv~vRs~mv~d~a~-----~La~A~tIAtRYSaVRRQ~~i  323 (670)
T KOG0136|consen  271 EPDGTYVKPPHPKLGYGTMVYVRSLMVMDQAR-----FLAKAATIATRYSAVRRQSEI  323 (670)
T ss_pred             cCCCccccCCccccceeeeEEEeehhHHHHHH-----HHHHHHHHHHHHHHHhhccCC
Confidence             2231110  0111     11221  111222     33455667 999999999864

>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []

Probab=98.50  E-value=7.7e-07  Score=79.50  Aligned_cols=118  Identities=19%  Similarity=0.325  Sum_probs=76.6

Q ss_pred             HHHHhhchhhhcCCceeEEEecCCCC--CCCC----CCCceE-EEEeCCEEEEEeEeecccCCCCCCEEEEEEEeC---C
Q 020535          154 EQKQKYLPSLAQLNTIACWALTEPAY--GSDA----SALNTT-ATKVEGGWILEGQKRWIGNSTFADVLVIFARNT---T  223 (325)
Q Consensus       154 ~q~~~~l~~l~~g~~~~~~a~tEp~~--Gsd~----~~~~~~-a~~~~~g~~lnG~K~~it~~~~Ad~~~v~a~~~---~  223 (325)
                      +-..+|...+.+.++..+-+++.|..  +..+    ..+-.+ .+++++|.+|+|.|...|+++.+|.++|+-...   +
T Consensus       123 ~n~~~y~~~~~~ndL~~t~a~~dPq~DRs~~~~q~d~d~~lrVVee~~dGIvVrGAK~~~T~a~~adei~V~p~~~~~~~  202 (264)
T PF11794_consen  123 ENIRRYYEYVQENDLFLTHAITDPQGDRSKPPHQEDPDVYLRVVEETDDGIVVRGAKMLATGAPYADEILVFPTRAMRPG  202 (264)
T ss_dssp             HHHHHHHHHHHHHT--EEEEES--SSSTTSTGGSSSCCSB-EEEEE-SSEEEEEEEEEEEETGCCSSEEEE--SSSSTTC
T ss_pred             HHHHHHHHHHHHhCcEeeeeeeCCCcCCCCCccccCCCceEEEEEEcCCCEEEeChhhhhcCCcccccEEEeeccCCCCC
Confidence            34457888899999999999999873  2222    113333 345789999999999999999999999885432   1


Q ss_pred             -CCCeEEEEEeCCCCCeEEeccCCccCccc------------cceeeEEEeeeeeCCCCCc
Q 020535          224 -TNQINGYLVKKDAPGLTVTKIENKIGLRI------------VQNGDILLKKVFVPDEDRL  271 (325)
Q Consensus       224 -~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~------------~~~~~v~f~~v~Vp~~~~l  271 (325)
                       .+-...|.||.++||+++.........+.            -.-+-+.||||+||.++++
T Consensus       203 d~dyAv~FavP~~tpGlk~i~R~s~~~~~~~~~D~PlssrfdE~Da~vvFDdVfVPWeRVF  263 (264)
T PF11794_consen  203 DEDYAVAFAVPMNTPGLKIICRESYADGRRSPFDHPLSSRFDEMDALVVFDDVFVPWERVF  263 (264)
T ss_dssp             CGGG-EEEEEETT-TTEEEEE---TTGCCG-TTT-TTTTS----EEEEEEEEEEEEGGGEE
T ss_pred             CCceEEEEEccCCCCCEEEEeCCCCCCCccccCcCCcccccCCceEEEEECCcccchhhcc
Confidence             23356899999999999886544333321            1235789999999998764

The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.

>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.22  E-value=5.8e-06  Score=78.44  Aligned_cols=123  Identities=18%  Similarity=0.281  Sum_probs=86.1

Q ss_pred             cCCH--HHHHhhchhhhcCCceeEEEecCCCCC-CC-C---C--CCceE-EEEeCCEEEEEeEeecccCCCCCCEEEEE-
Q 020535          150 CGSE--EQKQKYLPSLAQLNTIACWALTEPAYG-SD-A---S--ALNTT-ATKVEGGWILEGQKRWIGNSTFADVLVIF-  218 (325)
Q Consensus       150 ~g~~--~q~~~~l~~l~~g~~~~~~a~tEp~~G-sd-~---~--~~~~~-a~~~~~g~~lnG~K~~it~~~~Ad~~~v~-  218 (325)
                      +|++  +-..+|+..+.+.++..+-|+|.|-.- |- +   .  .+-.+ .+.+++|.++.|.|..+|+++.+|.++|+ 
T Consensus       125 ~~~dy~~n~~~~~k~vqk~DL~~~hA~tdpk~dRsk~p~e~~dpdiyvrVvee~~dGIVVrGAK~~aT~~a~tdei~V~P  204 (493)
T COG2368         125 FGTDYHENAREYYKEVQKNDLALTHAITDPKGDRSKRPSEQKDPDIYVRVVEETEDGIVVRGAKALATGSALTDEIFVLP  204 (493)
T ss_pred             ccchHHHHHHHHHHHHHhcCceeeeceecCCccCCCChhhccCCCeeEEEEEEecCceEEEChHHHhccccccceEEEee
Confidence            4444  445689999999999999999988631 11 1   1  12222 34578999999999999999999988888 


Q ss_pred             EEe--CC-CCCeEEEEEeCCCCCeEEeccC---CccCccccce------------eeEEEeeeeeCCCCCcC
Q 020535          219 ARN--TT-TNQINGYLVKKDAPGLTVTKIE---NKIGLRIVQN------------GDILLKKVFVPDEDRLP  272 (325)
Q Consensus       219 a~~--~~-~~~~~~~lv~~~~~Gv~~~~~~---~~~G~~~~~~------------~~v~f~~v~Vp~~~~lg  272 (325)
                      .+.  .+ .+-...|.+|.++|||.+.-..   ..-|+.+.+.            +-+.||||+||.++++-
T Consensus       205 t~~~~~~d~dfAv~FaiP~dt~GvK~i~r~s~~~~~~~~~g~fd~plssrfde~dailVfDdVfVPWERVf~  276 (493)
T COG2368         205 TRSMQEDDKDFAVAFAIPMDTEGVKFICRRSYELGRGAEGGPFDYPLSSRFDENDAILVFDDVFVPWERVFI  276 (493)
T ss_pred             ccccCCCCCceEEEEEcccCCCceEEEecCcchhhcccCCCCCCCccccccccCceEEEecccccchhheee
Confidence            433  22 2335689999999998877443   2222111222            33899999999999984

>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component

Probab=98.18  E-value=4.5e-05  Score=74.49  Aligned_cols=119  Identities=15%  Similarity=0.231  Sum_probs=84.4

Q ss_pred             HHHHhhchhhhcCCceeEEEecCCCCC-C-CC---CCCc-eEEEEeCCEEEEEeEeecccCCCCCCEEEE-EEEe---CC
Q 020535          154 EQKQKYLPSLAQLNTIACWALTEPAYG-S-DA---SALN-TTATKVEGGWILEGQKRWIGNSTFADVLVI-FARN---TT  223 (325)
Q Consensus       154 ~q~~~~l~~l~~g~~~~~~a~tEp~~G-s-d~---~~~~-~~a~~~~~g~~lnG~K~~it~~~~Ad~~~v-~a~~---~~  223 (325)
                      +-..+|+..+.+.++..+-+++.|..- | .+   ..+- -..+++++|.+|+|.|...|+++.+|.++| ..+.   ++
T Consensus       136 ~n~~~yy~~~qenDL~~~hA~~dPk~DRsk~p~e~~D~~v~VVee~~dGIVVrGAK~~aT~a~~a~ei~V~~~~~~~~~~  215 (519)
T TIGR02310       136 DNARNWYKRIQESCLYFNHAIVNPPIDRNKPIDQVKDVYIKIEEERDDGIVVSGAKVVATNSALTHYNFIGFGSAQIIGD  215 (519)
T ss_pred             HHHHHHHHHHHHhCceeecceeCCCCCCCCccccCCCCceEEEEEcCCcEEEeCHHHHhcccchhcceeeccCcccccCC
Confidence            445688999999999999999988631 1 11   1122 234567889999999999999999998888 4443   12


Q ss_pred             CCC-eEEEEEeCCCCCeEEeccCCcc----Cc----------c-ccceeeEEEeeeeeCCCCCcC
Q 020535          224 TNQ-INGYLVKKDAPGLTVTKIENKI----GL----------R-IVQNGDILLKKVFVPDEDRLP  272 (325)
Q Consensus       224 ~~~-~~~~lv~~~~~Gv~~~~~~~~~----G~----------~-~~~~~~v~f~~v~Vp~~~~lg  272 (325)
                      ++. -..|.||.++|||++.......    +.          | .-.-+-+.||||+||.|+++-
T Consensus       216 d~dyAvaFavP~dtpGlk~IcR~s~~~~~~~~~~~fD~PlssrfdE~Da~vVFDdVfVPWErVF~  280 (519)
T TIGR02310       216 NDDFALMFIAPMDAEGVKLICRHSYELVAGATGSPFDYPLSSRFDENDAILVMDSVFIPWENVLI  280 (519)
T ss_pred             CCCeEEEEEeEcCCCceEEEeCCchhhccccCCCCCcCccccccCCceEEEEeCCcccchHHcee
Confidence            333 4579999999999988543211    00          0 112356889999999999983

This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Shigella, Photorhabdus and Pasteurella. The family modelled by this alignment is narrowly limited to gammaproteobacteria to exclude other aromatic hydroxylases involved in various secondary metabolic pathways. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).

>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1

Probab=93.12  E-value=0.068  Score=43.14  Aligned_cols=47  Identities=11%  Similarity=0.090  Sum_probs=34.3

Q ss_pred             CChHHHHhhchhhhH--HHhhcccCcHHHHHHHHHHhhhhhhcccCCCCCCCC
Q 020535          275 NSFQDTSKVSEGEET--VWSTISSFSDQPAETCSDAGKYSSHDSGWLAPLQII  325 (325)
Q Consensus       275 ~g~~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~~~ya~~R~~fG~pl~~~  325 (325)
                      +||+++.+.++.+|+  ++.++|.    +....-...+|+++|++||+|+.+.
T Consensus         2 ~G~~~~~~~l~~~R~~~~~~~~g~----~~~~l~~a~~~~~~r~~~g~~l~~~   50 (150)
T PF00441_consen    2 QGWAVALDTLNHERLMIAAMALGI----ARRALDEAIEYARRRRQFGKPLAEH   50 (150)
T ss_dssp             BHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTEETTEEGGGS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcccccCcccch
Confidence            589999999999999  7778890    0000000099999999999998763

3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0055114 oxidation-reduction process; PDB: 2EBA_A 1RX0_C 1R2J_A 2OKU_A 3MKH_C 2JIF_C 3GQT_D 3EON_D 3EOM_C 3D6B_A ....

>PF14749 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; PDB: 2FON_A 1W07_B 1IS2_B 2DDH_A

Probab=87.97  E-value=0.48  Score=37.44  Aligned_cols=32  Identities=31%  Similarity=0.405  Sum_probs=26.1

Q ss_pred             HHhhhHHHHHHHhcCCHHHHHhhchhhhcCCc
Q 020535          137 LVHSSLAMLTIALCGSEEQKQKYLPSLAQLNT  168 (325)
Q Consensus       137 ~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~  168 (325)
                      .+|.++-...|...||+||+++|+|+..+.+.
T Consensus        93 ~lH~~mFip~I~~qgt~EQ~~~Wlp~a~~~~I  124 (125)
T PF14749_consen   93 GLHFGMFIPTIMGQGTEEQQAKWLPKAENYEI  124 (125)
T ss_dssp             HHHHHTHHHHHHHHS-HHHHHHHHHHHHTTSS
T ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHCCcc
Confidence            36776777899999999999999999887764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	325
2ix5_A	436	Short Chain Specific Acyl-Coa Oxidase From Arabidop		1e-136
2ix6_A	449	Short Chain Specific Acyl-Coa Oxidase From Arabidop		1e-136
3sf6_A	403	Crystal Structure Of Glutaryl-Coa Dehydrogenase Fro		5e-42
2eba_A	385	Crystal Structure Of The Putative Glutaryl-coa Dehy		3e-40
3swo_A	399	Crystal Structure Of A Glutaryl-Coa Dehydrogenase F		5e-37
1sir_A	394	The Crystal Structure And Mechanism Of Human Glutar		2e-35
2r0m_A	394	The Effect Of A Glu370asp Mutation In Glutaryl-Coa		2e-35
1siq_A	392	The Crystal Structure And Mechanism Of Human Glutar		2e-35
3gqt_A	399	Crystal Structure Of Glutaryl-Coa Dehydrogenase Fro		3e-35
3eom_A	396	2.4 A Crystal Structure Of Native Glutaryl-Coa Dehy		3e-35
3d6b_A	395	2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogena		3e-35
1ws9_A	387	Crystal Structure Of Project Id Tt0172 From Thermus		4e-31
1jqi_A	388	Crystal Structure Of Rat Short Chain Acyl-Coa Dehyd		2e-27
2dvl_A	372	Crystal Structure Of Project Tt0160 From Thermus Th		4e-27
3pfd_A	393	Crystal Structure Of An Acyl-Coa Dehydrogenase From		1e-25
2vig_A	391	Crystal Structure Of Human Short-Chain Acyl Coa Deh		2e-25
3owa_A	597	Crystal Structure Of Acyl-Coa Dehydrogenase Complex		8e-24
2jif_A	404	Structure Of Human Short-Branched Chain Acyl-Coa De		8e-24
1ukw_A	379	Crystal Structure Of Medium-Chain Acyl-Coa Dehydrog		3e-23
3nf4_A	387	Crystal Structure Of Acyl-Coa Dehydrogenase From My		2e-22
2z1q_A	577	Crystal Structure Of Acyl Coa Dehydrogenase Length		7e-22
1ivh_A	394	Structure Of Human Isovaleryl-coa Dehydrogenase At		9e-20
3mpi_A	397	Structure Of The Glutaryl-Coenzyme A Dehydrogenase		1e-19
1udy_A	396	Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaocta		4e-19
1rx0_A	393	Crystal Structure Of Isobutyryl-Coa Dehydrogenase C		4e-19
2a1t_A	421	Structure Of The Human Mcad:etf E165betaa Complex L		1e-18
1egd_A	396	Structure Of T255e, E376g Mutant Of Human Medium Ch		1e-18
1ege_A	396	Structure Of T255e, E376g Mutant Of Human Medium Ch		2e-18
2uxw_A	607	Crystal Structure Of Human Very Long Chain Acyl-coa		2e-18
3b96_A	587	Structural Basis For Substrate Fatty-Acyl Chain Spe		2e-18
3mdd_A	385	Crystal Structures Of Medium Chain Acyl-Coa Dehydro		2e-18
1buc_A	383	Three-Dimensional Structure Of Butyryl-Coa Dehydrog		3e-18
2pg0_A	385	Crystal Structure Of Acyl-Coa Dehydrogenase From Ge		1e-15
3r7k_A	403	Crystal Structure Of A Probable Acyl Coa Dehydrogen		2e-11
3oib_A	403	Crystal Structure Of A Putative Acyl-Coa Dehydrogen		2e-08
1r2j_A	366	Fkbi For Biosynthesis Of Methoxymalonyl Extender Un		2e-07
2fon_A	683	X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxid		5e-07
2wbi_A	428	Crystal Structure Of Human Acyl-Coa Dehydrogenase 1		2e-06
1w07_A	659	Arabidopsis Thaliana Acyl-Coa Oxidase 1 Length = 65		1e-05
4doy_A	437	Crystal Structure Of Dibenzothiophene Desulfurizati		1e-04
4hr3_A	415	Structure Of A Putative Acyl-Coa Dehydrogenase From		7e-04

>pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 In Complex With Acetoacetyl-Coa Length = 436

Iteration: 1
 Score =  482 bits (1241), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 225/283 (79%), Positives = 249/283 (87%)
Query: 1   MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQ 60
           M + SS  +   +K  +SSYF+LP +++SVAFPQATPAS FPPC SDYY F+DLLT EEQ
Sbjct: 1   MAVLSSADRASNEKKVKSSYFDLPPMEMSVAFPQATPASTFPPCTSDYYHFNDLLTPEEQ 60
Query: 61  AVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAI 120
           A+R KVRECMEKE+APIM EYWEKAEFPFH+ PKLGA+ VAGG+IKGYGCPG S+T  AI
Sbjct: 61  AIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLSITANAI 120
Query: 121 AIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYG 180
           A AEIARVDASCSTFILVHSSL MLTIALCGSE QK+KYLPSLAQLNT+ACWALTEP  G
Sbjct: 121 ATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNG 180
Query: 181 SDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLT 240
           SDAS L TTATKVEGGW + GQKRWIGNSTFAD+L+IFARNTTTNQING++VKKDAPGL 
Sbjct: 181 SDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGLK 240
Query: 241 VTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKV 283
            TKI NKIGLR+VQNGDILL+ VFVPDEDRLPGVNSFQDTSKV
Sbjct: 241 ATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGVNSFQDTSKV 283

>pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 Length = 449

Iteration: 1
 Score =  481 bits (1239), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 225/283 (79%), Positives = 249/283 (87%)
Query: 1   MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQ 60
           M + SS  +   +K  +SSYF+LP +++SVAFPQATPAS FPPC SDYY F+DLLT EEQ
Sbjct: 1   MAVLSSADRASNEKKVKSSYFDLPPMEMSVAFPQATPASTFPPCTSDYYHFNDLLTPEEQ 60
Query: 61  AVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAI 120
           A+R KVRECMEKE+APIM EYWEKAEFPFH+ PKLGA+ VAGG+IKGYGCPG S+T  AI
Sbjct: 61  AIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLSITANAI 120
Query: 121 AIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYG 180
           A AEIARVDASCSTFILVHSSL MLTIALCGSE QK+KYLPSLAQLNT+ACWALTEP  G
Sbjct: 121 ATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNG 180
Query: 181 SDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLT 240
           SDAS L TTATKVEGGW + GQKRWIGNSTFAD+L+IFARNTTTNQING++VKKDAPGL 
Sbjct: 181 SDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGLK 240
Query: 241 VTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKV 283
            TKI NKIGLR+VQNGDILL+ VFVPDEDRLPGVNSFQDTSKV
Sbjct: 241 ATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGVNSFQDTSKV 283

>pdb|3SF6|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From Mycobacterium Smegmatis Length = 403

Iteration: 1
 Score =  168 bits (425), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 89/234 (38%), Positives = 132/234 (56%), Gaps = 3/234 (1%)
Query: 45  ASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIP-KLGALRVAGG 103
           A D    + +L++EE+ +R  VR  +++ I P +A ++E  E P   +  +LG L + G 
Sbjct: 20  ADDLIGINAVLSAEEREIRDTVRSVVQRRIKPHIASWYEDGELPARELAVELGELGLLGM 79
Query: 104 TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSL 163
            +KGYGC G S     +A  E+   D+   + + V  SLAM  I   GS+EQK ++LP +
Sbjct: 80  HLKGYGCAGMSAVAYGLACLELEAGDSGIRSLVSVQGSLAMYAIHAFGSDEQKDQWLPDM 139
Query: 164 AQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTT 223
           A  + I C+ LTEP +GSD + + T AT+    WIL G K WI N + ADV V++AR  T
Sbjct: 140 ASGHRIGCFGLTEPDHGSDPAGMRTRATRSGDDWILTGTKMWITNGSVADVAVVWAR--T 197
Query: 224 TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSF 277
              I G++V  D PG T   I++K+ LR     +++L  V +PD  RLPG  S 
Sbjct: 198 DEGIRGFVVPTDTPGFTANTIKSKMSLRASVTSELVLDGVRLPDSARLPGATSL 251

>pdb|2EBA|A Chain A, Crystal Structure Of The Putative Glutaryl-coa Dehydrogenase From Thermus Thermophilus Length = 385

Iteration: 1
 Score =  162 bits (409), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 87/228 (38%), Positives = 129/228 (56%), Gaps = 3/228 (1%)
Query: 47  DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIK 106
           D+Y  +DLLT EE+ V+   R  +EKE  P + ++WE+  FP H+IP+   L   G T+ 
Sbjct: 3   DFYALEDLLTPEEKEVQKAARRFLEKEALPHIRDWWEEGVFPTHLIPRFAELGFLGPTLP 62
Query: 107 -GYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQ 165
             YG  G S     +   E+ RVD+   +F+ V SSL M  I   GSEEQK+++LP LA+
Sbjct: 63  PEYGGAGVSSAAYGLICYELERVDSGLRSFVSVQSSLVMYPIYAYGSEEQKREFLPKLAR 122
Query: 166 LNTIACWALTEPAYGSDASALNTTATKVEGG-WILEGQKRWIGNSTFADVLVIFARNTTT 224
              + C+ LTEP  GSD      T  + EG  W+L G K WI N   A + VI+A++   
Sbjct: 123 GEMVGCFGLTEPDGGSDPYGNMKTRARREGDTWVLNGTKMWITNGNLAHLAVIWAKD-EG 181
Query: 225 NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLP 272
            ++ G+LV  D PG    +++ K+ LR     +++L++V VP+  RLP
Sbjct: 182 GEVLGFLVPTDTPGFQAREVKRKMSLRASVTSELVLEEVRVPESLRLP 229

>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From Mycobacterium Smegmatis In Complex With Fadh2 Length = 399

Iteration: 1
 Score =  151 bits (381), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 80/236 (33%), Positives = 126/236 (53%), Gaps = 2/236 (0%)
Query: 37  PASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLG 96
           P+ K      + +  D LL  +E+ +   VR+ ++  + P +  ++E A  P  +  + G
Sbjct: 8   PSKKSTYAPLELFDTDRLLDQDERDIAATVRQFVDTRLKPNVEGWFESATLPSELAKEFG 67
Query: 97  ALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQK 156
            L V G  ++GYGC G +     +A  E+   D+   +F+ V  SL+M +I   GSEEQK
Sbjct: 68  NLGVLGMHLQGYGCAGTNAVSYGLACMELEAGDSGFRSFVSVQGSLSMFSIYRYGSEEQK 127
Query: 157 QKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLV 216
            ++LP LA  + I C+ LTEP +GS+ + + T A +    WIL G K WI N   ADV  
Sbjct: 128 NEWLPRLAAGDAIGCFGLTEPDFGSNPAGMRTRARRDGSDWILNGTKMWITNGNLADVAT 187
Query: 217 IFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLP 272
           ++A+  T + I G+LV  D PG T  +I  K+ LR     +++L  V +P   +LP
Sbjct: 188 VWAQ--TDDGIRGFLVPTDTPGFTANEIHRKLSLRASVTSELVLDNVRLPASAQLP 241

>pdb|1SIR|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa Dehydrogenase Length = 394

Iteration: 1
 Score =  145 bits (367), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 86/229 (37%), Positives = 124/229 (54%), Gaps = 3/229 (1%)
Query: 51  FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGC 110
            ++ LT++E  +R   R   ++ + P +        F   +I ++G L V G TIKGYGC
Sbjct: 12  LEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIKGYGC 71
Query: 111 PGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
            G S     +   E+ RVD+   + + V SSL M  I   GSEEQ+QKYLP LA+   + 
Sbjct: 72  AGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLG 131
Query: 171 CWALTEPAYGSDASALNTTA--TKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQIN 228
           C+ LTEP  GSD S++ T A        + L G K WI NS  AD+ V++AR      I 
Sbjct: 132 CFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWAR-CEDGCIR 190
Query: 229 GYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSF 277
           G+L++K   GL+  +I+ K  LR    G I++  V VP+E+ LPG +S 
Sbjct: 191 GFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSL 239

>pdb|2R0M|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa Dehydrogenase On Proton Transfer To The Dienolate Intermediate Length = 394

Iteration: 1
 Score =  145 bits (367), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 86/229 (37%), Positives = 124/229 (54%), Gaps = 3/229 (1%)
Query: 51  FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGC 110
            ++ LT++E  +R   R   ++ + P +        F   +I ++G L V G TIKGYGC
Sbjct: 12  LEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIKGYGC 71
Query: 111 PGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
            G S     +   E+ RVD+   + + V SSL M  I   GSEEQ+QKYLP LA+   + 
Sbjct: 72  AGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLG 131
Query: 171 CWALTEPAYGSDASALNTTA--TKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQIN 228
           C+ LTEP  GSD S++ T A        + L G K WI NS  AD+ V++AR      I 
Sbjct: 132 CFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWAR-CEDGCIR 190
Query: 229 GYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSF 277
           G+L++K   GL+  +I+ K  LR    G I++  V VP+E+ LPG +S 
Sbjct: 191 GFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSL 239

>pdb|1SIQ|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa Dehydrogenase Length = 392

Iteration: 1
 Score =  145 bits (367), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 86/229 (37%), Positives = 124/229 (54%), Gaps = 3/229 (1%)
Query: 51  FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGC 110
            ++ LT++E  +R   R   ++ + P +        F   +I ++G L V G TIKGYGC
Sbjct: 10  LEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIKGYGC 69
Query: 111 PGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
            G S     +   E+ RVD+   + + V SSL M  I   GSEEQ+QKYLP LA+   + 
Sbjct: 70  AGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLG 129
Query: 171 CWALTEPAYGSDASALNTTA--TKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQIN 228
           C+ LTEP  GSD S++ T A        + L G K WI NS  AD+ V++AR      I 
Sbjct: 130 CFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWAR-CEDGCIR 188
Query: 229 GYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSF 277
           G+L++K   GL+  +I+ K  LR    G I++  V VP+E+ LPG +S 
Sbjct: 189 GFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSL 237

>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei With Fragment (1,4-Dimethyl-1,2,3,4- Tetrahydroquinoxalin-6-Yl)methylamine Length = 399

Iteration: 1
 Score =  145 bits (366), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 84/235 (35%), Positives = 127/235 (54%), Gaps = 3/235 (1%)
Query: 47  DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI- 105
           D    D  L  +E+ VR       + ++AP + E +        +  ++G + + G TI 
Sbjct: 14  DPLLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTDAAIFREMGEIGLLGPTIP 73
Query: 106 KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQ 165
           + YG PG       +   E+ RVD+   + + V SSL M+ I   GS+ QK+KYLP LA 
Sbjct: 74  EQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLAT 133
Query: 166 LNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR--NTT 223
              I C+ LTEP +GSD  ++ T A KV GG+ L G K WI NS  ADV V++A+     
Sbjct: 134 GEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLDEDG 193
Query: 224 TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQ 278
            ++I G++++K   GL+   I  K+GLR    G+I+L + FVP+E+ LP V   +
Sbjct: 194 RDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPHVKGLR 248

>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei Length = 396

Iteration: 1
 Score =  145 bits (366), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 84/235 (35%), Positives = 127/235 (54%), Gaps = 3/235 (1%)
Query: 47  DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI- 105
           D    D  L  +E+ VR       + ++AP + E +        +  ++G + + G TI 
Sbjct: 11  DPLLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTDAAIFREMGEIGLLGPTIP 70
Query: 106 KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQ 165
           + YG PG       +   E+ RVD+   + + V SSL M+ I   GS+ QK+KYLP LA 
Sbjct: 71  EQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLAT 130
Query: 166 LNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR--NTT 223
              I C+ LTEP +GSD  ++ T A KV GG+ L G K WI NS  ADV V++A+     
Sbjct: 131 GEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLDEDG 190
Query: 224 TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQ 278
            ++I G++++K   GL+   I  K+GLR    G+I+L + FVP+E+ LP V   +
Sbjct: 191 RDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPHVKGLR 245

>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei Length = 395

Iteration: 1
 Score =  145 bits (366), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 84/235 (35%), Positives = 127/235 (54%), Gaps = 3/235 (1%)
Query: 47  DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI- 105
           D    D  L  +E+ VR       + ++AP + E +        +  ++G + + G TI 
Sbjct: 10  DPLLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTDAAIFREMGEIGLLGPTIP 69
Query: 106 KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQ 165
           + YG PG       +   E+ RVD+   + + V SSL M+ I   GS+ QK+KYLP LA 
Sbjct: 70  EQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLAT 129
Query: 166 LNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR--NTT 223
              I C+ LTEP +GSD  ++ T A KV GG+ L G K WI NS  ADV V++A+     
Sbjct: 130 GEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLDEDG 189
Query: 224 TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQ 278
            ++I G++++K   GL+   I  K+GLR    G+I+L + FVP+E+ LP V   +
Sbjct: 190 RDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPHVKGLR 244

>pdb|1WS9|A Chain A, Crystal Structure Of Project Id Tt0172 From Thermus Thermophilus Hb8 Length = 387

Iteration: 1
 Score =  131 bits (330), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 85/239 (35%), Positives = 120/239 (50%), Gaps = 9/239 (3%)
Query: 57  SEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSV 115
           +EE+ V    RE ++ E+AP  AE      FP+ ++ KL    V G  + + YG  G S 
Sbjct: 9   AEERQVLGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEFGVFGALVPEAYGGAGLST 68
Query: 116 TGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALT 175
              A  +  IA  D + +  +  H+SLA   I L GSE QK+ +LP LA    +  W LT
Sbjct: 69  RLFARMVEAIAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLT 128
Query: 176 EPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR-------NTTTNQIN 228
           EP  GSDA+AL T A KVEGGW L G K++I   + A V V+ AR             I+
Sbjct: 129 EPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQGSVAGVYVVMARTDPPPSPERKHQGIS 188
Query: 229 GYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVN-SFQDTSKVSEG 286
            +   +   GL V + E K+GL       ++L+ +FVP+E  L      F D  +V +G
Sbjct: 189 AFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGERGKGFYDVLRVLDG 247

>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa Dehydrogenase Complexed With Acetoacetyl-Coa Length = 388

Iteration: 1
 Score =  119 bits (298), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 119/226 (52%), Gaps = 6/226 (2%)
Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
           L    Q +R   R+  EKE+ PI A+  ++  FP   + K+G L +    + +     G 
Sbjct: 10  LPETHQMLRQTCRDFAEKELVPIAAQLDKEHLFPTSQVKKMGELGLLAMDVPEELSGAGL 69
Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
                +IA+ EI+R  AS    + V++SL +  I   GS +QKQ+++      + I C+A
Sbjct: 70  DYLAYSIALEEISRGCASTGVIMSVNNSLYLGPILKFGSSQQKQQWITPFTNGDKIGCFA 129
Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFA---RNTTTNQINGY 230
           L+EP  GSDA A +TTA +    W+L G K WI NS  A   V+FA   R+     I+ +
Sbjct: 130 LSEPGNGSDAGAASTTAREEGDSWVLNGTKAWITNSWEASATVVFASTDRSRQNKGISAF 189
Query: 231 LVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL--PGV 274
           LV    PGLT+ K E+K+G+R     +++ +   +P E+ L  PG+
Sbjct: 190 LVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPGM 235

>pdb|2DVL|A Chain A, Crystal Structure Of Project Tt0160 From Thermus Thermophilus Hb8 Length = 372

Iteration: 1
 Score =  118 bits (296), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 79/218 (36%), Positives = 121/218 (55%), Gaps = 3/218 (1%)
Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
           LT E++ V   VR    + + P+  EY  KAE+P+  +  L  L + G T  + +G  G 
Sbjct: 3   LTQEQRLVLDAVRRVAREVLYPLAPEYDRKAEYPWPQLKALAELGLLGMTTPEEWGGVGL 62
Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
                A+A+ E+A  D S +  + V S L    +   GSE QK++YL  LA+   I  + 
Sbjct: 63  DSVTWALALEELAAADPSVAVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEWIGAFC 122
Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVK 233
           LTEP  GSDA +L   A +V+GG++L G K WI ++  A + V+ AR  T   I+ +LV+
Sbjct: 123 LTEPQAGSDAKSLRAEARRVKGGFVLNGVKSWITSAGHAHLYVVMAR--TEKGISAFLVE 180
Query: 234 KDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           K  PGL+  + E K+GL      ++ L++VFVP+E+ L
Sbjct: 181 KGTPGLSFGRPEEKMGLHAAHTAEVRLEEVFVPEENLL 218

>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound To Reduced Flavin Adenine Dinucleotide Solved By Combined Iodide Ion Sad Mr Length = 393

Iteration: 1
 Score =  114 bits (284), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 114/223 (51%), Gaps = 6/223 (2%)
Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
           L  E  A+R  +R   EKEIAP  AE  EKA FP   +  L +   +   + + YG  G 
Sbjct: 19  LPEEHIALREAIRALAEKEIAPYAAEVDEKARFPEEALAALNSSGFSAIHVPEEYGGQGA 78
Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
                 I I E+ARVD S S    V+  L  + + L GSEE K++ LP++A    +A +A
Sbjct: 79  DSVATCIVIEEVARVDCSASLIPAVNK-LGTMGLILRGSEELKKQVLPAVASGEAMASYA 137
Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWI---GNSTFADVLVIFARNTTTNQINGY 230
           L+E   GSDA+++ T A      WIL G K WI   G ST+  V+ +   +   N I+ +
Sbjct: 138 LSEREAGSDAASMRTRAVADGDDWILNGSKCWITNGGKSTWYTVMAVTDPDKGANGISAF 197
Query: 231 LVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG 273
           +V KD  G TV   E K+G++     ++  +   +P  DR+ G
Sbjct: 198 MVHKDDEGFTVGPKERKLGIKGSPTTELYFENCRIPG-DRIIG 239

>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa Dehydrogenase Length = 391

Iteration: 1
 Score =  113 bits (282), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 116/227 (51%), Gaps = 6/227 (2%)
Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
           L    Q +    R+  EKE+ PI A+  ++  FP   + K+G L +    + +  G  G 
Sbjct: 6   LPETHQMLLQTCRDFAEKELFPIAAQVDKEHLFPAAQVKKMGGLGLLAMDVPEELGGAGL 65
Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
                AIA+ EI+R  AS    + V++SL +  I   GS+EQKQ ++      + I C+A
Sbjct: 66  DYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFA 125
Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFA---RNTTTNQINGY 230
           L+EP  GSDA A +TTA      W+L G K WI N+  A   V+FA   R      I+ +
Sbjct: 126 LSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITNAWEASAAVVFASTDRALQNKSISAF 185
Query: 231 LVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL--PGVN 275
           LV    PGLT+ K E+K+G+R     +++ +   +P +  L  PG+ 
Sbjct: 186 LVPMPTPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKDSILGEPGMG 232

>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With Fad From Bacillus Anthracis Length = 597

Iteration: 1
 Score =  107 bits (268), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 116/222 (52%), Gaps = 8/222 (3%)
Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEF--PFHVIPKLGALRVAGGTI-KGYGCP 111
            +SE + +     + +  E+ P + EY E+ EF     ++ + G L + G  + + YG  
Sbjct: 33  FSSEHKXIAKTTEDFIVNEVLPEL-EYLEQHEFDRSVRLLKEAGELGLLGADVPEEYGGI 91
Query: 112 GHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIAC 171
           G     +A+   + +R      T    H  +  L I L G+EEQK+KYLP LA    +A 
Sbjct: 92  GLDKVSSALIAEKFSRAGGFAITH-GAHVGIGSLPIVLFGNEEQKKKYLPLLATGEKLAA 150
Query: 172 WALTEPAYGSDASALNTTAT-KVEG-GWILEGQKRWIGNSTFADVLVIFARNTTTNQING 229
           +ALTEP  GSDA    TTA    EG  ++L G+K+WI NS FADV +++A+       + 
Sbjct: 151 YALTEPGSGSDALGAKTTARLNAEGTHYVLNGEKQWITNSAFADVFIVYAK-IDGEHFSA 209
Query: 230 YLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           ++V+KD  G++ +  E K G++      ++L+   VP E+ L
Sbjct: 210 FIVEKDYAGVSTSPEEKKXGIKCSSTRTLILEDALVPKENLL 251

>pdb|2JIF|A Chain A, Structure Of Human Short-Branched Chain Acyl-Coa Dehydrogenase (Acadsb) Length = 404

Iteration: 1
 Score =  107 bits (267), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 112/221 (50%), Gaps = 5/221 (2%)
Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIK-GYGCPGH 113
            T EE  ++  V++  +++IAP+++   E ++    VI  L    + G  +   YG  G 
Sbjct: 29  FTDEEMMIKSSVKKFAQEQIAPLVSTMDENSKMEKSVIQGLFQQGLMGIEVDPEYGGTGA 88
Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
           S     + I E+A+VDAS + F  + ++L    I   G+EEQK  YLP L     +  + 
Sbjct: 89  SFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTT-EKVGSFC 147
Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTT---NQINGY 230
           L+E   GSD+ AL T A K    ++L G K WI ++  A + ++ A    T     I  +
Sbjct: 148 LSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAEHAGLFLVMANVDPTIGYKGITSF 207
Query: 231 LVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           LV +D PGL + K ENK+GLR      +  + V VP+ + L
Sbjct: 208 LVDRDTPGLHIGKPENKLGLRASSTCPLTFENVKVPEANIL 248

>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase From Thermus Thermophilus Hb8 Length = 379

Iteration: 1
 Score =  105 bits (263), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 115/225 (51%), Gaps = 5/225 (2%)
Query: 51  FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYG 109
            D  LT E++ ++   R   ++ I P+  EY EK E P+ VI KL  + +    I + YG
Sbjct: 1   IDFSLTEEQRQLQALARRFAKEVILPVAQEYDEKEEVPWPVIEKLHEVGLLNAIIPEEYG 60
Query: 110 CPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTI 169
             G  +    I   E+A       T I + S L +  + L G+EEQK+++L  L +   +
Sbjct: 61  GMGLKMLDEVIVGEELAYACMGIYT-IPMASDLGITPVLLAGTEEQKERFLRPLTEKPAL 119
Query: 170 ACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQING 229
           A +AL+EP  GSDA+AL T A +    ++L G K WI N   A+ +V+FA      +  G
Sbjct: 120 AAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNGGEAEWVVVFATVNPELRHKG 179
Query: 230 ---YLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
               +V++  PG    KI  K+G R     +++ + V VP E+RL
Sbjct: 180 VVALVVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRL 224

>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound To Flavin Adenine Dinucleotide Length = 387

Iteration: 1
 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 116/224 (51%), Gaps = 17/224 (7%)
Query: 37  PASKFPPCASDYYQFDDLLTSEEQAVRMKV-RECMEKEIAPIMAEYWEKAEFPFHVIPKL 95
           P S   P A      D LL S+E A  +++ RE  +K + PI+  + +   +P  V  +L
Sbjct: 2   PGSMIHPMA-----VDRLLPSQEAAELIELTREIADKVLDPIVDRHEKDETYPEGVFEQL 56
Query: 96  GALRVAGGTI-----KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALC 150
           GA     G +     + +G  G         + EIA   AS +  + VHS L+   + + 
Sbjct: 57  GA----AGLLSLPQPEEWGGGGQPYEVYLQVLEEIAARWASVAVAVSVHS-LSSHPLLVF 111
Query: 151 GSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST 210
           G+EEQK+++LP +     I  ++L+EP  GSDA+AL   AT  +GG+++ G K WI +  
Sbjct: 112 GTEEQKKRWLPGMLSGEQIGAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWITHGG 171
Query: 211 FADVLVIFARNTTTNQ-INGYLVKKDAPGLTVTKIENKIGLRIV 253
            AD   +FAR    ++ ++ +LV  D PGL+  K E K+GL  V
Sbjct: 172 KADFYTLFARTGEGSRGVSCFLVPADQPGLSFGKPEEKMGLHAV 215

>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase Length = 577

Iteration: 1
 Score =  101 bits (251), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 56/135 (41%), Positives = 79/135 (58%), Gaps = 3/135 (2%)
Query: 139 HSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGG-- 196
           H+S+  L +   G+EEQK+KYLP LA    IA + LTEP  GSDA A  T AT  E G  
Sbjct: 113 HTSIGTLPLVYFGTEEQKRKYLPKLASGEWIAAYCLTEPGSGSDALAAKTRATLSEDGKH 172
Query: 197 WILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNG 256
           +IL G K+WI N+ FA +  +FA+         +LV++D PGL+    E K+G++     
Sbjct: 173 YILNGVKQWISNAGFAHLFTVFAK-VDGEHFTAFLVERDTPGLSFGPEEKKMGIKASSTR 231
Query: 257 DILLKKVFVPDEDRL 271
            ++L+ V VP E+ L
Sbjct: 232 QVILEDVKVPVENVL 246

>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6 Angstroms Resolution: Structural Basis For Substrate Specificity Length = 394

Iteration: 1
 Score = 94.0 bits (232), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 106/220 (48%), Gaps = 8/220 (3%)
Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFP--FHVIPKLGALRVAGGTIK-GYGCP 111
           L+ E++ +R  + + +++ +AP   E     EF        +LG L V G T    YG  
Sbjct: 13  LSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGS 72
Query: 112 GHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIAC 171
           G       + + EI+R   +       HS+L +  +   G+E QK+KYLP L     I  
Sbjct: 73  GLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGA 132
Query: 172 WALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT-----TTNQ 226
            A++EP  GSD  ++   A K    +IL G K WI N   ADVL+++A+        +  
Sbjct: 133 LAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLAAVPASRG 192
Query: 227 INGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVP 266
           I  ++V+K  PG + +K  +K+G+R     +++ +   +P
Sbjct: 193 ITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIP 232

>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase Glutaryl-Coa Complex Length = 397

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 115/229 (50%), Gaps = 11/229 (4%)
Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFH-VIPKLGALRVAGGTI-KGYGCPG 112
           L+ E Q ++ +VR  + K+I P   ++  +  FP+   +  +G L   G  I + YG  G
Sbjct: 5   LSKELQMLQKEVRNFVNKKIVPFADQWDNENHFPYEEAVRPMGELGFFGTVIPEEYGGEG 64
Query: 113 --HSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
                  A I   EIAR  ++    + +       TI   GSE  K+KY+P L+    + 
Sbjct: 65  MDQGWLAAMIVTEEIARGSSALRVQLNMEVLGCAYTILTYGSEALKKKYVPKLSSAEFLG 124
Query: 171 CWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFA---RNTTTNQI 227
            + +TEP  GSD  A+++TA      W+L G K WI N+  ADVL+ +A   +   +  +
Sbjct: 125 GFGITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTWISNAAQADVLIYYAYTDKAAGSRGL 184
Query: 228 NGYLVK-KDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL--PG 273
           + ++++ ++ PG+  + +E K+G      G++ L  V VP E+ L  PG
Sbjct: 185 SAFVIEPRNFPGIKTSNLE-KLGSHASPTGELFLDNVKVPKENILGKPG 232

>pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaoctanoyl-Coa Length = 396

Iteration: 1
 Score = 92.0 bits (227), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 117/250 (46%), Gaps = 18/250 (7%)
Query: 31  AFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFH 90
           A PQ  P S F         F+  LT +++  +   R+   +EI P+ AEY    E+P  
Sbjct: 2   AVPQCEPGSGF--------SFE--LTEQQKEFQATARKFAREEIIPVAAEYDRTGEYPVP 51
Query: 91  VIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIAL 149
           ++ +   L +    I + +G  G  +  + +   E+A       T I  ++ L  + + +
Sbjct: 52  LLKRAWELGLMNTHIPESFGGLGLGIIDSCLITEELAYGCTGVQTAIEANT-LGQVPLII 110
Query: 150 CGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS 209
            G+ +Q++KYL  + +   +  + +TEP  GSD + + T A K    +I+ GQK WI N 
Sbjct: 111 GGNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNG 170
Query: 210 TFADVLVIFARNT------TTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKV 263
             A+   + AR+        +    G++V+ D PG+ + + E  +G R      I+ + V
Sbjct: 171 GKANWYFLLARSDPDPKAPASKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDV 230
Query: 264 FVPDEDRLPG 273
            VP E+ L G
Sbjct: 231 RVPKENVLTG 240

>pdb|1RX0|A Chain A, Crystal Structure Of Isobutyryl-Coa Dehydrogenase Complexed With SubstrateLIGAND. Length = 393

Iteration: 1
 Score = 92.0 bits (227), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 102/203 (50%), Gaps = 4/203 (1%)
Query: 72  KEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIK-GYGCPGHSVTGAAIAIAEIARVDA 130
           +E+AP MAE+ +K  FP  V+ K   L   G  I+   G  G S    ++    +A    
Sbjct: 36  REMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYIQTDVGGSGLSRLDTSVIFEALATGCT 95
Query: 131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTA 190
           S + +I +H+  A +  +  G+EEQ+ K+ P L  +   A + LTEP  GSDA++L T+A
Sbjct: 96  STTAYISIHNMCAWMIDSF-GNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSA 154
Query: 191 TKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTN--QINGYLVKKDAPGLTVTKIENKI 248
            K    +IL G K +I  +  +D+ V+  R        I+  +V+K  PGL+  K E K+
Sbjct: 155 KKQGDHYILNGSKAFISGAGESDIYVVMCRTGGPGPKGISCIVVEKGTPGLSFGKKEKKV 214
Query: 249 GLRIVQNGDILLKKVFVPDEDRL 271
           G        ++ +   VP  +R+
Sbjct: 215 GWNSQPTRAVIFEDCAVPVANRI 237

>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex Length = 421

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 108/230 (46%), Gaps = 8/230 (3%)
Query: 51  FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYG 109
           F    T +++  +   R+   +EI P+ AEY +  E+P  +I +   L +    I +  G
Sbjct: 37  FSFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCG 96
Query: 110 CPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTI 169
             G     A +   E+A       T I   +SL  + I + G+++QK+KYL  + +   +
Sbjct: 97  GLGLGTFDACLISEELAYGCTGVQTAI-EGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLM 155
Query: 170 ACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT------T 223
             + +TEP  GSD + + T A K    +I+ GQK WI N   A+   + AR+        
Sbjct: 156 CAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPA 215
Query: 224 TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG 273
                G++V+ D PG+ + + E  +G R      I+ + V VP E+ L G
Sbjct: 216 NKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIG 265

>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain Acyl- Coa Dehydrogenase Length = 396

Iteration: 1
 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 108/230 (46%), Gaps = 8/230 (3%)
Query: 51  FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYG 109
           F    T +++  +   R+   +EI P+ AEY +  E+P  +I +   L +    I +  G
Sbjct: 12  FSFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCG 71
Query: 110 CPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTI 169
             G     A +   E+A       T I   +SL  + I + G+++QK+KYL  + +   +
Sbjct: 72  GLGLGTFDACLISEELAYGCTGVQTAI-EGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLM 130
Query: 170 ACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT------T 223
             + +TEP  GSD + + T A K    +I+ GQK WI N   A+   + AR+        
Sbjct: 131 CAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPA 190
Query: 224 TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG 273
                G++V+ D PG+ + + E  +G R      I+ + V VP E+ L G
Sbjct: 191 NKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIG 240

>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain Acyl- Coa Dehydrogenase Length = 396

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 108/230 (46%), Gaps = 8/230 (3%)
Query: 51  FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYG 109
           F    T +++  +   R+   +EI P+ AEY +  E+P  +I +   L +    I +  G
Sbjct: 12  FSFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCG 71
Query: 110 CPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTI 169
             G     A +   E+A       T I   +SL  + I + G+++QK+KYL  + +   +
Sbjct: 72  GLGLGTFDACLISEELAYGCTGVQTAI-EGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLM 130
Query: 170 ACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT------T 223
             + +TEP  GSD + + T A K    +I+ GQK WI N   A+   + AR+        
Sbjct: 131 CAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPA 190
Query: 224 TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG 273
                G++V+ D PG+ + + E  +G R      I+ + V VP E+ L G
Sbjct: 191 NKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIG 240

>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa Dehydrogenase (acadvl) Length = 607

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 79/148 (53%), Gaps = 10/148 (6%)
Query: 139 HSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGG-- 196
           H S+    I L G++ QK+KYLP LA   T+A + LTEP+ GSDA+++ T+A     G  
Sbjct: 133 HQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKY 192
Query: 197 WILEGQKRWIGNSTFADVLVIFARNTTTN--------QINGYLVKKDAPGLTVTKIENKI 248
           + L G K WI N   AD+  +FA+   T+        +I  ++V++   G+T    E K+
Sbjct: 193 YTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGITHGPPEKKM 252
Query: 249 GLRIVQNGDILLKKVFVPDEDRLPGVNS 276
           G++     ++    V VP E+ L  V S
Sbjct: 253 GIKASNTAEVFFDGVRVPSENVLGEVGS 280

>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain Specificity: Crystal Structure Of Human Very-Long-Chain Acyl-Coa Dehydrogenase Length = 587

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 79/148 (53%), Gaps = 10/148 (6%)
Query: 139 HSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGG-- 196
           H S+    I L G++ QK+KYLP LA   T+A + LTEP+ GSDA+++ T+A     G  
Sbjct: 113 HQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKY 172
Query: 197 WILEGQKRWIGNSTFADVLVIFARNTTTN--------QINGYLVKKDAPGLTVTKIENKI 248
           + L G K WI N   AD+  +FA+   T+        +I  ++V++   G+T    E K+
Sbjct: 173 YTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGITHGPPEKKM 232
Query: 249 GLRIVQNGDILLKKVFVPDEDRLPGVNS 276
           G++     ++    V VP E+ L  V S
Sbjct: 233 GIKASNTAEVFFDGVRVPSENVLGEVGS 260

>pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase From Pig Liver Mitochondria With And Without Substrate Length = 385

Iteration: 1
 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 110/230 (47%), Gaps = 8/230 (3%)
Query: 51  FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYG 109
           F   LT +++  +   R+   +EI P+ AEY    E+P  ++ +   L +    I + +G
Sbjct: 2   FSFELTEQQKEFQATARKFAREEIIPVAAEYDRTGEYPVPLLKRAWELGLMNTHIPESFG 61
Query: 110 CPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTI 169
             G  +  + +   E+A       T I  ++ L  + + + G+ +Q++KYL  + +   +
Sbjct: 62  GLGLGIIDSCLITEELAYGCTGVQTAIEANT-LGQVPLIIGGNYQQQKKYLGRMTEEPLM 120
Query: 170 ACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT------T 223
             + +TEP  GSD + + T A K    +I+ GQK WI N   A+   + AR+        
Sbjct: 121 CAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPA 180
Query: 224 TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG 273
           +    G++V+ D PG+ + + E  +G R      I+ + V VP E+ L G
Sbjct: 181 SKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTG 230

>pdb|1BUC|A Chain A, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase From Megasphaera Elsdenii Length = 383

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 113/225 (50%), Gaps = 8/225 (3%)
Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIK----GYGC 110
           LT  +Q       +  EK++AP + E   K  +   +I +L +L + G   +    G G 
Sbjct: 5   LTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSLGITGAYFEEKYGGSGD 64
Query: 111 PGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
            G  V    +A+ E+A+ DA  +  +    SL    I   G+E QK+K+L  L +   + 
Sbjct: 65  DGGDVLSYILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLG 124
Query: 171 CWALTEPAYGSDASALNTTATKVEGG-WILEGQKRWIGNSTFADVLVIFA---RNTTTNQ 226
            + LTEP  G+DAS   T ATK + G + L G K +I N   AD+ ++FA   ++   + 
Sbjct: 125 AFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADIYIVFAMTDKSKGNHG 184
Query: 227 INGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           I  ++++   PG T  K E+K+G+   Q  +++ + V VP E+ L
Sbjct: 185 ITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENML 229

>pdb|2PG0|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From Geobacillus Kaustophilus Length = 385

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 101/225 (44%), Gaps = 21/225 (9%)
Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCP--- 111
           L  E    R   R+ +EKE  P   ++ ++   P     K+G          G+ CP   
Sbjct: 10  LREEHHMFRAAFRKFLEKEAYPHYNDWEKRGIIPRSFWAKMGE--------NGFLCPWVD 61
Query: 112 ----GHSVTGA-AIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQL 166
               G +   A ++ I E      S    I +H+ +    IA  G+EEQKQK+LP     
Sbjct: 62  EKYGGLNADFAYSVVINEELEKVGSSLVGIGLHNDIVTPYIASYGTEEQKQKWLPKCVTG 121
Query: 167 NTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQ 226
             I   A+TEP  GSD + ++TTA K    +I+ GQK +I N   AD++V+  +     +
Sbjct: 122 ELITAIAMTEPGAGSDLANISTTAVKDGDYYIVNGQKTFITNGIHADLIVVACKTDPQAK 181
Query: 227 -----INGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVP 266
                I+  +V++D PG T  +   K+GL      ++  +   VP
Sbjct: 182 PPHRGISLLVVERDTPGFTRGRKLEKVGLHAQDTAELFFQDAKVP 226

>pdb|3R7K|A Chain A, Crystal Structure Of A Probable Acyl Coa Dehydrogenase From Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 403

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 107/231 (46%), Gaps = 16/231 (6%)
Query: 56  TSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCP---- 111
           T E +A+    R  +E+EIAP +AE+    E P  +   L A  V    + G G P    
Sbjct: 30  TPERRALSQMARSFVEREIAPKLAEWEHVGEIPRDL--HLNAAEVG---LLGIGFPEEVG 84
Query: 112 ---GHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYL-PSLAQLN 167
              G+++  A +  A +A   ++     L    +A+  IA  GS+   ++Y+ P+LA   
Sbjct: 85  GSGGNAIDSALVTEAILAAGGSTGVCAALFTHGIALPHIAANGSDALIERYVRPTLAG-K 143
Query: 168 TIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT--TTN 225
            I    +TEP  GSD + L T A +    +++ G K +I +   AD +    R       
Sbjct: 144 MIGSLGVTEPGAGSDVANLRTRAVREGDTYVVNGAKTFITSGVRADFVTTAVRTGGPGYG 203
Query: 226 QINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNS 276
            ++  ++ K++PG  V++  +K+G R     ++    V VP ++ +   NS
Sbjct: 204 GVSLLVIDKNSPGFEVSRRLDKMGWRCSDTAELSFVDVRVPADNLVGAENS 254

>pdb|3OIB|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase From Mycobacterium Smegmatis, Iodide Soak Length = 403

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 89/219 (40%), Gaps = 12/219 (5%)
Query: 56  TSEEQAVRMKVRECMEKEIAPIMAEYWEKA-EFPFHVIPKLGALRVAGGTIKGYGCPGHS 114
           T+E +A+R  VR   E+E+ P  A  WE+A E P  +  K   L + G            
Sbjct: 27  TAEREALRKTVRAFAEREVLP-HAHEWERAGEIPRELHRKAAELGLLGAGFPEDAGGSGG 85
Query: 115 VTGAAIAIAEIARVDASCSTFILVHSSLAMLTIAL-----CGSEEQKQKYLPSLAQLNTI 169
                + I E      S      V++SL    IA+      G +     Y+    +   I
Sbjct: 86  DGADPVVICEEMHYAGSPGG---VYASLFTCGIAVPHMIASGDQRLIDTYVRPTLRGEKI 142
Query: 170 ACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT--TTNQI 227
              A+TEP  GSD   L T A      +++ G K +I +   AD +V  AR        +
Sbjct: 143 GALAITEPGGGSDVGHLRTRADLDGDHYVINGAKTYITSGVRADYVVTAARTGGPGAGGV 202
Query: 228 NGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVP 266
           +  +V K  PG  VT+  +K+G R     ++    V VP
Sbjct: 203 SLIVVDKGTPGFEVTRKLDKMGWRSSDTAELSYTDVRVP 241

>pdb|1R2J|A Chain A, Fkbi For Biosynthesis Of Methoxymalonyl Extender Unit Of Fk520 Polyketide Immunosuppresant Length = 366

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 4/150 (2%)
Query: 126 ARVDASCSTF--ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDA 183
           A V + CS+   ++    +A  T+   G   Q+  +L  L     +A    +E   GSD 
Sbjct: 62  AHVGSLCSSLRSVMTSQGMAAWTVQRLGDAGQRATFLKELTS-GKLAAVGFSERQAGSDL 120
Query: 184 SALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTK 243
           SA+ T         +++G K W   + +AD LV+F      +     +V  D PG+ V +
Sbjct: 121 SAMRTRVRLDGDTAVVDGHKVWTTAAAYADHLVVFGLQEDGSGAV-VVVPADTPGVRVER 179
Query: 244 IENKIGLRIVQNGDILLKKVFVPDEDRLPG 273
           +    G R   + D+ L +V VP    L G
Sbjct: 180 VPKPSGCRAAGHADLHLDQVRVPAGAVLAG 209

>pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase From Lycopersicon Esculentum (Tomato) Length = 683

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 77/172 (44%), Gaps = 27/172 (15%)
Query: 135 FILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTAT--- 191
           F  +H  + +  I   G+++Q++K+LP   ++  I C+A TE  +GS+   L TTAT   
Sbjct: 117 FTDLHWGMFIPAIKGQGTDKQQEKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDP 176
Query: 192 ----KVEGGWILEGQKRWIGN----STFADVLVIFARNTTTNQ---INGYLVK------- 233
                V     L   K W G     ST A   V++AR  T  +   +NG++V+       
Sbjct: 177 QTDEFVIHSPTLTSSKWWPGGLGKVSTHA---VVYARLITDGKDYGVNGFIVQLRSLEDH 233
Query: 234 KDAPGLTVTKIENKIG---LRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSK 282
           K  PG+TV  I  K G      + NG +    V +P +  L  V+      K
Sbjct: 234 KPLPGVTVGDIGMKFGNGAYNSMDNGVLSFDHVRIPRDQMLMRVSQVTKEGK 285

>pdb|2WBI|A Chain A, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11 Length = 428

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 10/109 (9%)
Query: 144 MLTIALCGSEEQKQKYLPSLAQLNTIACWALTEP-AYGSDASALNTTATKVEGGWILEGQ 202
           M  + L GSEEQK+++L  L Q N  +C+ +TEP    SDA+ +  +  + E  +++ G+
Sbjct: 124 MEVLHLYGSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSIQRDEDSYVINGK 183
Query: 203 KRW---IGNSTFADVLVIFARNTTTN-----QINGYLVKKDAPGLTVTK 243
           K W    GN     + ++  R   T+     Q +  LV  + PG+ + +
Sbjct: 184 KWWSSGAGNPK-CKIAIVLGRTQNTSLSRHKQHSMILVPMNTPGVKIIR 231

>pdb|1W07|A Chain A, Arabidopsis Thaliana Acyl-Coa Oxidase 1 Length = 659

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 27/161 (16%)
Query: 135 FILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTAT--- 191
           ++ +H  + +  I   G+EEQ++K+L    ++  I C+A TE  +GS+   L TTAT   
Sbjct: 98  YVDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDP 157
Query: 192 KVEGGWI----LEGQKRWIGN----STFADVLVIFARNTTTNQ---INGYLVKKDA---- 236
           K +   I        K W G     ST A   V++AR  T  +   I+G++V+  +    
Sbjct: 158 KTDEFVIHTPTQTASKWWPGGLGKVSTHA---VVYARLITNGKDYGIHGFIVQLRSLEDH 214
Query: 237 ---PGLTVTKIENKIG---LRIVQNGDILLKKVFVPDEDRL 271
              P +TV  I  K+G      + NG ++   V +P +  L
Sbjct: 215 SPLPNITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQML 255

>pdb|4DOY|A Chain A, Crystal Structure Of Dibenzothiophene Desulfurization Enzyme C Length = 437

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 75/177 (42%), Gaps = 12/177 (6%)
Query: 108 YGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLN 167
           YG  G     A   + EIA  D S       H + A + I L GS+EQ++     +AQ N
Sbjct: 86  YGGWGADWPTAIEVVREIAAADGSLGHLFGYHLTNAPM-IELIGSQEQEEHLYTQIAQNN 144
Query: 168 TIACWALTEPAYGSDASALN--TTATKVE-GGWILEGQKRWIGNSTFADVLVIFARNTTT 224
               W     +  +++  L+   +AT  E GG++L G K +   +  +D+L +F      
Sbjct: 145 ----WWTGNASSENNSHVLDWKVSATPTEDGGYVLNGTKHFCSGAKGSDLLFVFGVVQDD 200
Query: 225 NQINGYLVKKDAP----GLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSF 277
           +   G ++    P    G+T       IG+R   +G      V V  ++ L   N+F
Sbjct: 201 SPQQGAIIAAAIPTSRAGVTPNDDWAAIGMRQTDSGSTDFHNVKVEPDEVLGAPNAF 257

>pdb|4HR3|A Chain A, Structure Of A Putative Acyl-Coa Dehydrogenase From Mycobacterium Abscessus Length = 415

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 9/108 (8%)
Query: 151 GSEEQKQKYLPSLAQLNTIACWALTEP-AYGSDASALNTTATKVEGG-WILEGQKRWIGN 208
           GS+EQK+ +L  L + +  + + +TEP    SDA+ +  TA  VEG   ++ G+K W   
Sbjct: 125 GSQEQKEVWLEPLLEGDIRSAFCMTEPDVASSDATNMAATAV-VEGDEVVINGRKWWSTG 183
Query: 209 STFADVLVIFARNTTTNQINGY------LVKKDAPGLTVTKIENKIGL 250
               D  VI     T    + Y      LV  D PG+TV ++   +G 
Sbjct: 184 VGHPDCKVIIFMGLTDPNAHRYARHSMVLVPMDTPGITVERMLPTMGF 231

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	325
2ix5_A	436	Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4,	1e-144
3sf6_A	403	Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB	1e-122
1siq_A	392	GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog	1e-121
3swo_A	399	Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d	1e-120
2eba_A	385	Putative glutaryl-COA dehydrogenase; thermus therm	1e-120
3ii9_A	396	Glutaryl-COA dehydrogenase; slipchip, microfluidic	1e-117
2dvl_A	372	Acyl-COA dehydrogenase; structural genomics, NPPSF	2e-68
2vig_A	391	Short-chain specific acyl-COA dehydrogenase,; fatt	4e-67
2d29_A	387	Acyl-COA dehydrogenase; structural genomics, NPPSF	5e-67
1ukw_A	379	Acyl-COA dehydrogenase; oxidoreductase, riken stru	2e-65
2jif_A	404	Short/branched chain specific acyl-COA dehydrogen;	2e-65
3pfd_A	393	Acyl-COA dehydrogenase; structural genomics, seatt	6e-65
3nf4_A	387	Acyl-COA dehydrogenase; seattle structural genomic	1e-64
1buc_A	383	Butyryl-COA dehydrogenase; acyl-COA dehydrogenase	2e-64
1egd_A	396	Medium chain acyl-COA dehydrogenase; flavoprotein,	2e-63
1rx0_A	393	Acyl-COA dehydrogenase family member 8, mitochondr	6e-62
1ivh_A	394	Isovaleryl-COA dehydrogenase; oxidoreductase, acyl	3e-61
2uxw_A	607	VERY-long-chain specific acyl-COA dehydrogenase; f	3e-59
1r2j_A	366	Protein FKBI; polyketide synthase, polyketide, acy	6e-59
3mpi_A	397	Glutaryl-COA dehydrogenase; alpha-beta fold, oxido	8e-58
2z1q_A	577	Acyl-COA dehydrogenase; FAD, structural genomics,	6e-57
3owa_A	597	Acyl-COA dehydrogenase; structural genomics, cente	1e-56
3m9v_A	439	FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO	3e-54
2c12_A	439	Nitroalkane oxidase; oxidoreductase, flavoenzyme,	1e-51
3p4t_A	403	Putative acyl-COA dehydrogenase; ssgcid, structura	3e-50
2pg0_A	385	Acyl-COA dehydrogenase; GK1316, geobacillus kausto	7e-50
3mxl_A	395	Nitrososynthase; flavin monooxygenase, acyl-COA de	4e-49
3r7k_A	403	Probable acyl COA dehydrogenase; ssgcid, structura	5e-49
3mkh_A	438	Nitroalkane oxidase; oxidoreductase flavoenzyme, a	5e-49
2ddh_A	661	Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl	2e-28
1w07_A	659	Acyl-COA oxidase; oxidoreductase, peroxisomal beta	3e-27
2jbr_A	422	P-hydroxyphenylacetate hydroxylase C2 oxygenase C;	6e-25
2rfq_A	394	3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1	1e-17
2wbi_A	428	Acyl-COA dehydrogenase family member 11; human, ph	1e-15
2or0_A	414	Hydroxylase; APC7385, rhodococcus SP. RHA1, struct	5e-12
3djl_A	541	Protein AIDB; alpha helix, beta-barrel, FAD, flavo	1e-10
1u8v_A	490	Gamma-aminobutyrate metabolism dehydratase/isomera	4e-09
2yyk_A	481	4-hydroxyphenylacetate-3-hydroxylase; structurome,	4e-09
3hwc_A	515	Chlorophenol-4-monooxygenase component 2; beta bar	1e-08

>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A* Length = 436

 Score =  413 bits (1063), Expect = e-144
 Identities = 225/283 (79%), Positives = 249/283 (87%)

Query: 1   MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQ 60
           M + SS  +   +K  +SSYF+LP +++SVAFPQATPAS FPPC SDYY F+DLLT EEQ
Sbjct: 1   MAVLSSADRASNEKKVKSSYFDLPPMEMSVAFPQATPASTFPPCTSDYYHFNDLLTPEEQ 60

Query: 61  AVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAI 120
           A+R KVRECMEKE+APIM EYWEKAEFPFH+ PKLGA+ VAGG+IKGYGCPG S+T  AI
Sbjct: 61  AIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLSITANAI 120

Query: 121 AIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYG 180
           A AEIARVDASCSTFILVHSSL MLTIALCGSE QK+KYLPSLAQLNT+ACWALTEP  G
Sbjct: 121 ATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNG 180

Query: 181 SDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLT 240
           SDAS L TTATKVEGGW + GQKRWIGNSTFAD+L+IFARNTTTNQING++VKKDAPGL 
Sbjct: 181 SDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGLK 240

Query: 241 VTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKV 283
            TKI NKIGLR+VQNGDILL+ VFVPDEDRLPGVNSFQDTSKV
Sbjct: 241 ATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGVNSFQDTSKV 283

>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis} Length = 403

 Score =  356 bits (915), Expect = e-122
 Identities = 90/256 (35%), Positives = 135/256 (52%), Gaps = 3/256 (1%)

Query: 29  SVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFP 88
           S+              A D    + +L++EE+ +R  VR  +++ I P +A ++E  E P
Sbjct: 4   SMTNSAVAQPRSQRRGADDLIGINAVLSAEEREIRDTVRSVVQRRIKPHIASWYEDGELP 63

Query: 89  FH-VIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTI 147
              +  +LG L + G  +KGYGC G S     +A  E+   D+   + + V  SLAM  I
Sbjct: 64  ARELAVELGELGLLGMHLKGYGCAGMSAVAYGLACLELEAGDSGIRSLVSVQGSLAMYAI 123

Query: 148 ALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIG 207
              GS+EQK ++LP +A  + I C+ LTEP +GSD + + T AT+    WIL G K WI 
Sbjct: 124 HAFGSDEQKDQWLPDMASGHRIGCFGLTEPDHGSDPAGMRTRATRSGDDWILTGTKMWIT 183

Query: 208 NSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPD 267
           N + ADV V++AR  T   I G++V  D PG T   I++K+ LR     +++L  V +PD
Sbjct: 184 NGSVADVAVVWAR--TDEGIRGFVVPTDTPGFTANTIKSKMSLRASVTSELVLDGVRLPD 241

Query: 268 EDRLPGVNSFQDTSKV 283
             RLPG  S     + 
Sbjct: 242 SARLPGATSLGAPLRC 257

>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A* Length = 392

 Score =  353 bits (908), Expect = e-121
 Identities = 87/240 (36%), Positives = 125/240 (52%), Gaps = 3/240 (1%)

Query: 46  SDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI 105
            D    ++ LT++E  +R   R   ++ + P +        F   +I ++G L V G TI
Sbjct: 5   QDPLVLEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTI 64

Query: 106 KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQ 165
           KGYGC G S     +   E+ RVD+   + + V SSL M  I   GSEEQ+QKYLP LA+
Sbjct: 65  KGYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAK 124

Query: 166 LNTIACWALTEPAYGSDASALNTTA--TKVEGGWILEGQKRWIGNSTFADVLVIFARNTT 223
              + C+ LTEP  GSD S++ T A        + L G K WI NS  AD+ V++AR   
Sbjct: 125 GELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWAR-CE 183

Query: 224 TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKV 283
              I G+L++K   GL+  +I+ K  LR    G I++  V VP+E+ LPG +S       
Sbjct: 184 DGCIRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSLGGPFGC 243

>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis} Length = 399

 Score =  349 bits (898), Expect = e-120
 Identities = 81/255 (31%), Positives = 129/255 (50%), Gaps = 4/255 (1%)

Query: 29  SVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFP 88
           S+     +  S + P   + +  D LL  +E+ +   VR+ ++  + P +  ++E A  P
Sbjct: 2   SMTLTAPSKKSTYAP--LELFDTDRLLDQDERDIAATVRQFVDTRLKPNVEGWFESATLP 59

Query: 89  FHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIA 148
             +  + G L V G  ++GYGC G +     +A  E+   D+   +F+ V  SL+M +I 
Sbjct: 60  SELAKEFGNLGVLGMHLQGYGCAGTNAVSYGLACMELEAGDSGFRSFVSVQGSLSMFSIY 119

Query: 149 LCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGN 208
             GSEEQK ++LP LA  + I C+ LTEP +GS+ + + T A +    WIL G K WI N
Sbjct: 120 RYGSEEQKNEWLPRLAAGDAIGCFGLTEPDFGSNPAGMRTRARRDGSDWILNGTKMWITN 179

Query: 209 STFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDE 268
              ADV  ++A+  T + I G+LV  D PG T  +I  K+ LR     +++L  V +P  
Sbjct: 180 GNLADVATVWAQ--TDDGIRGFLVPTDTPGFTANEIHRKLSLRASVTSELVLDNVRLPAS 237

Query: 269 DRLPGVNSFQDTSKV 283
            +LP           
Sbjct: 238 AQLPLAEGLSAPLSC 252

>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus} Length = 385

 Score =  349 bits (897), Expect = e-120
 Identities = 86/239 (35%), Positives = 129/239 (53%), Gaps = 3/239 (1%)

Query: 47  DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIK 106
           D+Y  +DLLT EE+ V+   R  +EKE  P + ++WE+  FP H+IP+   L   G T+ 
Sbjct: 3   DFYALEDLLTPEEKEVQKAARRFLEKEALPHIRDWWEEGVFPTHLIPRFAELGFLGPTLP 62

Query: 107 -GYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQ 165
             YG  G S     +   E+ RVD+   +F+ V SSL M  I   GSEEQK+++LP LA+
Sbjct: 63  PEYGGAGVSSAAYGLICYELERVDSGLRSFVSVQSSLVMYPIYAYGSEEQKREFLPKLAR 122

Query: 166 LNTIACWALTEPAYGSDASA-LNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTT 224
              + C+ LTEP  GSD    + T A +    W+L G K WI N   A + VI+A+    
Sbjct: 123 GEMVGCFGLTEPDGGSDPYGNMKTRARREGDTWVLNGTKMWITNGNLAHLAVIWAK-DEG 181

Query: 225 NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKV 283
            ++ G+LV  D PG    +++ K+ LR     +++L++V VP+  RLP     +     
Sbjct: 182 GEVLGFLVPTDTPGFQAREVKRKMSLRASVTSELVLEEVRVPESLRLPKALGLKAPLSC 240

>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A Length = 396

 Score =  344 bits (884), Expect = e-117
 Identities = 84/249 (33%), Positives = 128/249 (51%), Gaps = 3/249 (1%)

Query: 38  ASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGA 97
            +       D    D  L  +E+ VR       + ++AP + E +        +  ++G 
Sbjct: 2   MAAATFHWDDPLLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTDAAIFREMGE 61

Query: 98  LRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQK 156
           + + G TI + YG PG       +   E+ RVD+   + + V SSL M+ I   GS+ QK
Sbjct: 62  IGLLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQK 121

Query: 157 QKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLV 216
           +KYLP LA    I C+ LTEP +GSD  ++ T A KV GG+ L G K WI NS  ADV V
Sbjct: 122 EKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFV 181

Query: 217 IFAR--NTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV 274
           ++A+      ++I G++++K   GL+   I  K+GLR    G+I+L + FVP+E+ LP V
Sbjct: 182 VWAKLDEDGRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPHV 241

Query: 275 NSFQDTSKV 283
              +     
Sbjct: 242 KGLRGPFTC 250

>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus} Length = 372

 Score =  216 bits (554), Expect = 2e-68
 Identities = 79/219 (36%), Positives = 121/219 (55%), Gaps = 3/219 (1%)

Query: 54  LLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPG 112
            LT E++ V   VR    + + P+  EY  KAE+P+  +  L  L + G T  + +G  G
Sbjct: 2   TLTQEQRLVLDAVRRVAREVLYPLAPEYDRKAEYPWPQLKALAELGLLGMTTPEEWGGVG 61

Query: 113 HSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACW 172
                 A+A+ E+A  D S +  + V S L    +   GSE QK++YL  LA+   I  +
Sbjct: 62  LDSVTWALALEELAAADPSVAVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEWIGAF 121

Query: 173 ALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLV 232
            LTEP  GSDA +L   A +V+GG++L G K WI ++  A + V+ AR  T   I+ +LV
Sbjct: 122 CLTEPQAGSDAKSLRAEARRVKGGFVLNGVKSWITSAGHAHLYVVMAR--TEKGISAFLV 179

Query: 233 KKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           +K  PGL+  + E K+GL      ++ L++VFVP+E+ L
Sbjct: 180 EKGTPGLSFGRPEEKMGLHAAHTAEVRLEEVFVPEENLL 218

>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A* Length = 391

 Score =  214 bits (547), Expect = 4e-67
 Identities = 74/221 (33%), Positives = 113/221 (51%), Gaps = 4/221 (1%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
           L    Q +    R+  EKE+ PI A+  ++  FP   + K+G L +    + +  G  G 
Sbjct: 6   LPETHQMLLQTCRDFAEKELFPIAAQVDKEHLFPAAQVKKMGGLGLLAMDVPEELGGAGL 65

Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
                AIA+ EI+R  AS    + V++SL +  I   GS+EQKQ ++      + I C+A
Sbjct: 66  DYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFA 125

Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFA---RNTTTNQINGY 230
           L+EP  GSDA A +TTA      W+L G K WI N+  A   V+FA   R      I+ +
Sbjct: 126 LSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITNAWEASAAVVFASTDRALQNKSISAF 185

Query: 231 LVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           LV    PGLT+ K E+K+G+R     +++ +   +P +  L
Sbjct: 186 LVPMPTPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKDSIL 226

>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A* Length = 387

 Score =  213 bits (546), Expect = 5e-67
 Identities = 81/225 (36%), Positives = 114/225 (50%), Gaps = 8/225 (3%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
             +EE+ V    RE ++ E+AP  AE      FP+ ++ KL    V G  + + YG  G 
Sbjct: 7   EGAEERQVLGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEFGVFGALVPEAYGGAGL 66

Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
           S    A  +  IA  D + +  +  H+SLA   I L GSE QK+ +LP LA    +  W 
Sbjct: 67  STRLFARMVEAIAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWG 126

Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQ------- 226
           LTEP  GSDA+AL T A KVEGGW L G K++I   + A V V+ AR             
Sbjct: 127 LTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQGSVAGVYVVMARTDPPPSPERKHQG 186

Query: 227 INGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           I+ +   +   GL V + E K+GL       ++L+ +FVP+E  L
Sbjct: 187 ISAFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALL 231

>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 Length = 379

 Score =  210 bits (536), Expect = 2e-65
 Identities = 72/221 (32%), Positives = 113/221 (51%), Gaps = 5/221 (2%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
           LT E++ ++   R   ++ I P+  EY EK E P+ VI KL  + +    I + YG  G 
Sbjct: 5   LTEEQRQLQALARRFAKEVILPVAQEYDEKEEVPWPVIEKLHEVGLLNAIIPEEYGGMGL 64

Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
            +    I   E+A       T I + S L +  + L G+EEQK+++L  L +   +A +A
Sbjct: 65  KMLDEVIVGEELAYACMGIYT-IPMASDLGITPVLLAGTEEQKERFLRPLTEKPALAAFA 123

Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR---NTTTNQINGY 230
           L+EP  GSDA+AL T A +    ++L G K WI N   A+ +V+FA          +   
Sbjct: 124 LSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNGGEAEWVVVFATVNPELRHKGVVAL 183

Query: 231 LVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           +V++  PG    KI  K+G R     +++ + V VP E+RL
Sbjct: 184 VVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRL 224

>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens} Length = 404

 Score =  210 bits (537), Expect = 2e-65
 Identities = 70/221 (31%), Positives = 111/221 (50%), Gaps = 5/221 (2%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
            T EE  ++  V++  +++IAP+++   E ++    VI  L    + G  +   YG  G 
Sbjct: 29  FTDEEMMIKSSVKKFAQEQIAPLVSTMDENSKMEKSVIQGLFQQGLMGIEVDPEYGGTGA 88

Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
           S     + I E+A+VDAS + F  + ++L    I   G+EEQK  YLP L     +  + 
Sbjct: 89  SFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTT-EKVGSFC 147

Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFA---RNTTTNQINGY 230
           L+E   GSD+ AL T A K    ++L G K WI ++  A + ++ A          I  +
Sbjct: 148 LSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAEHAGLFLVMANVDPTIGYKGITSF 207

Query: 231 LVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           LV +D PGL + K ENK+GLR      +  + V VP+ + L
Sbjct: 208 LVDRDTPGLHIGKPENKLGLRASSTCPLTFENVKVPEANIL 248

>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile} Length = 393

 Score =  208 bits (533), Expect = 6e-65
 Identities = 74/230 (32%), Positives = 111/230 (48%), Gaps = 7/230 (3%)

Query: 46  SDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI 105
             +  F   L  E  A+R  +R   EKEIAP  AE  EKA FP   +  L +   +   +
Sbjct: 12  PSFELFQ--LPEEHIALREAIRALAEKEIAPYAAEVDEKARFPEEALAALNSSGFSAIHV 69

Query: 106 -KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLA 164
            + YG  G       I I E+ARVD S S    V+  L  + + L GSEE K++ LP++A
Sbjct: 70  PEEYGGQGADSVATCIVIEEVARVDCSASLIPAVNK-LGTMGLILRGSEELKKQVLPAVA 128

Query: 165 QLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR---N 221
               +A +AL+E   GSDA+++ T A      WIL G K WI N   +    + A    +
Sbjct: 129 SGEAMASYALSEREAGSDAASMRTRAVADGDDWILNGSKCWITNGGKSTWYTVMAVTDPD 188

Query: 222 TTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
              N I+ ++V KD  G TV   E K+G++     ++  +   +P +  +
Sbjct: 189 KGANGISAFMVHKDDEGFTVGPKERKLGIKGSPTTELYFENCRIPGDRII 238

>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile} Length = 387

 Score =  207 bits (530), Expect = 1e-64
 Identities = 70/237 (29%), Positives = 112/237 (47%), Gaps = 7/237 (2%)

Query: 37  PASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLG 96
           P S   P A D        + E   +    RE  +K + PI+  + +   +P  V  +LG
Sbjct: 2   PGSMIHPMAVDRLL----PSQEAAELIELTREIADKVLDPIVDRHEKDETYPEGVFEQLG 57

Query: 97  ALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQ 155
           A  +      + +G  G         + EIA   AS +  + VHS L+   + + G+EEQ
Sbjct: 58  AAGLLSLPQPEEWGGGGQPYEVYLQVLEEIAARWASVAVAVSVHS-LSSHPLLVFGTEEQ 116

Query: 156 KQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVL 215
           K+++LP +     I  ++L+EP  GSDA+AL   AT  +GG+++ G K WI +   AD  
Sbjct: 117 KKRWLPGMLSGEQIGAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWITHGGKADFY 176

Query: 216 VIFAR-NTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
            +FAR    +  ++ +LV  D PGL+  K E K+GL  V           +  + R+
Sbjct: 177 TLFARTGEGSRGVSCFLVPADQPGLSFGKPEEKMGLHAVPTTSAFYDNARIDADRRI 233

>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1 Length = 383

 Score =  207 bits (529), Expect = 2e-64
 Identities = 68/225 (30%), Positives = 112/225 (49%), Gaps = 8/225 (3%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIK----GYGC 110
           LT  +Q       +  EK++AP + E   K  +   +I +L +L + G   +    G G 
Sbjct: 5   LTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSLGITGAYFEEKYGGSGD 64

Query: 111 PGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
            G  V    +A+ E+A+ DA  +  +    SL    I   G+E QK+K+L  L +   + 
Sbjct: 65  DGGDVLSYILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLG 124

Query: 171 CWALTEPAYGSDASALNTTATKVEGG-WILEGQKRWIGNSTFADVLVIFAR---NTTTNQ 226
            + LTEP  G+DAS   T ATK + G + L G K +I N   AD+ ++FA    +   + 
Sbjct: 125 AFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADIYIVFAMTDKSKGNHG 184

Query: 227 INGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           I  ++++   PG T  K E+K+G+   Q  +++ + V VP E+ L
Sbjct: 185 ITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENML 229

>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A* Length = 396

 Score =  205 bits (523), Expect = 2e-63
 Identities = 62/225 (27%), Positives = 107/225 (47%), Gaps = 10/225 (4%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
            T +++  +   R+   +EI P+ AEY +  E+P  +I +   L +    I +  G  G 
Sbjct: 16  FTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCGGLGL 75

Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
               A +   E+A       T I  +S L  + I + G+++QK+KYL  + +   +  + 
Sbjct: 76  GTFDACLISEELAYGCTGVQTAIEGNS-LGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYC 134

Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQ------- 226
           +TEP  GSD + + T A K    +I+ GQK WI N   A+   + AR +  +        
Sbjct: 135 VTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLAR-SDPDPKAPANKA 193

Query: 227 INGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
             G++V+ D PG+ + + E  +G R      I+ + V VP E+ L
Sbjct: 194 FTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVL 238

>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 393

 Score =  201 bits (513), Expect = 6e-62
 Identities = 66/223 (29%), Positives = 107/223 (47%), Gaps = 10/223 (4%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
           L  E++  +    +   +E+AP MAE+ +K  FP  V+ K   L   G  I    G  G 
Sbjct: 19  LNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYIQTDVGGSGL 78

Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
           S    ++    +A    S + +I +H+ +    I   G+EEQ+ K+ P L  +   A + 
Sbjct: 79  SRLDTSVIFEALATGCTSTTAYISIHN-MCAWMIDSFGNEEQRHKFCPPLCTMEKFASYC 137

Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQ-----IN 228
           LTEP  GSDA++L T+A K    +IL G K +I  +  +D+ V+  R   T       I+
Sbjct: 138 LTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAGESDIYVVMCR---TGGPGPKGIS 194

Query: 229 GYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
             +V+K  PGL+  K E K+G        ++ +   VP  +R+
Sbjct: 195 CIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRI 237

>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 394

 Score =  199 bits (508), Expect = 3e-61
 Identities = 67/239 (28%), Positives = 110/239 (46%), Gaps = 11/239 (4%)

Query: 48  YYQFDDL---LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPF--HVIPKLGALRVAG 102
               DD    L+ E++ +R  + + +++ +AP   E     EF        +LG L V G
Sbjct: 3   LLPVDDAINGLSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLG 62

Query: 103 GTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLP 161
            T    YG  G       + + EI+R   +       HS+L +  +   G+E QK+KYLP
Sbjct: 63  ITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLP 122

Query: 162 SLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARN 221
            L     I   A++EP  GSD  ++   A K    +IL G K WI N   ADVL+++A+ 
Sbjct: 123 KLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKT 182

Query: 222 TTTNQ-----INGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVN 275
                     I  ++V+K  PG + +K  +K+G+R     +++ +   +P  + L   N
Sbjct: 183 DLAAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHEN 241

>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Length = 607

 Score =  199 bits (507), Expect = 3e-59
 Identities = 72/280 (25%), Positives = 113/280 (40%), Gaps = 19/280 (6%)

Query: 4   HSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFP-PCASDYYQFDDLLTSEEQAV 62
           H   H   VD    + YF   +  + +   Q T    FP P        ++  T   + +
Sbjct: 3   HHHHHSSGVDLGTENLYFQSMSFAVGMFKGQLTTDQVFPYP-----SVLNEEQTQFLKEL 57

Query: 63  RMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIA 121
              V    E+   P  A+              L  L   G  +    G  G   T  A  
Sbjct: 58  VEPVSRFFEEVNDP--AKNDALEMVEETTWQGLKELGAFGLQVPSELGGVGLCNTQYARL 115

Query: 122 IAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGS 181
           +  +   D      +  H S+    I L G++ QK+KYLP LA   T+A + LTEP+ GS
Sbjct: 116 VEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGS 175

Query: 182 DASALNTTATKVEGG--WILEGQKRWIGNSTFADVLVIFAR--------NTTTNQINGYL 231
           DA+++ T+A     G  + L G K WI N   AD+  +FA+             +I  ++
Sbjct: 176 DAASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFV 235

Query: 232 VKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           V++   G+T    E K+G++     ++    V VP E+ L
Sbjct: 236 VERGFGGITHGPPEKKMGIKASNTAEVFFDGVRVPSENVL 275

>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1 Length = 366

 Score =  192 bits (491), Expect = 6e-59
 Identities = 48/216 (22%), Positives = 83/216 (38%), Gaps = 11/216 (5%)

Query: 57  SEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSV 115
            E  A+       +   +    AE+    E P  ++ +LGA  +    +   +G  G   
Sbjct: 2   PERDAL-------LTDLVGDRAAEWDTSGELPRDLLVRLGADGLLCAEVAAEHGGLGLGS 54

Query: 116 TGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALT 175
                  A +  + +S  + +     +A  T+   G   Q+  +L  L     +A    +
Sbjct: 55  RENGEFTAHVGSLCSSLRSVMTSQG-MAAWTVQRLGDAGQRATFLKELTS-GKLAAVGFS 112

Query: 176 EPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKD 235
           E   GSD SA+ T         +++G K W   + +AD LV+F            +V  D
Sbjct: 113 ERQAGSDLSAMRTRVRLDGDTAVVDGHKVWTTAAAYADHLVVFGL-QEDGSGAVVVVPAD 171

Query: 236 APGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
            PG+ V ++    G R   + D+ L +V VP    L
Sbjct: 172 TPGVRVERVPKPSGCRAAGHADLHLDQVRVPAGAVL 207

>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A* Length = 397

 Score =  190 bits (485), Expect = 8e-58
 Identities = 67/226 (29%), Positives = 111/226 (49%), Gaps = 11/226 (4%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPF-HVIPKLGALRVAGGTI-KGYGCPG 112
           L+ E Q ++ +VR  + K+I P   ++  +  FP+   +  +G L   G  I + YG  G
Sbjct: 5   LSKELQMLQKEVRNFVNKKIVPFADQWDNENHFPYEEAVRPMGELGFFGTVIPEEYGGEG 64

Query: 113 --HSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
                  A I   EIAR  ++    + +       TI   GSE  K+KY+P L+    + 
Sbjct: 65  MDQGWLAAMIVTEEIARGSSALRVQLNMEVLGCAYTILTYGSEALKKKYVPKLSSAEFLG 124

Query: 171 CWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQ---- 226
            + +TEP  GSD  A+++TA      W+L G K WI N+  ADVL+ +A  T        
Sbjct: 125 GFGITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTWISNAAQADVLIYYAY-TDKAAGSRG 183

Query: 227 INGYLV-KKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           ++ +++  ++ PG+  + +E K+G      G++ L  V VP E+ L
Sbjct: 184 LSAFVIEPRNFPGIKTSNLE-KLGSHASPTGELFLDNVKVPKENIL 228

>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus} Length = 577

 Score =  192 bits (490), Expect = 6e-57
 Identities = 69/222 (31%), Positives = 108/222 (48%), Gaps = 8/222 (3%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAE--FPFHVIPKLGALRVAGGTI-KGYGCP 111
                + +    R  +E+E+ P++    E  E      ++ K G L +    + + YG  
Sbjct: 28  FDESVKEIARTTRTFVEREVLPLLER-MEHGELELNVPLMRKAGELGLLAIDVPEEYGGL 86

Query: 112 GHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIAC 171
                 + +   E++      S     H+S+  L +   G+EEQK+KYLP LA    IA 
Sbjct: 87  DLPKVISTVVAEELSG-SGGFSVTYGAHTSIGTLPLVYFGTEEQKRKYLPKLASGEWIAA 145

Query: 172 WALTEPAYGSDASALNTTATKVEGG--WILEGQKRWIGNSTFADVLVIFARNTTTNQING 229
           + LTEP  GSDA A  T AT  E G  +IL G K+WI N+ FA +  +FA+         
Sbjct: 146 YCLTEPGSGSDALAAKTRATLSEDGKHYILNGVKQWISNAGFAHLFTVFAK-VDGEHFTA 204

Query: 230 YLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           +LV++D PGL+    E K+G++      ++L+ V VP E+ L
Sbjct: 205 FLVERDTPGLSFGPEEKKMGIKASSTRQVILEDVKVPVENVL 246

>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Length = 597

 Score =  192 bits (489), Expect = 1e-56
 Identities = 71/245 (28%), Positives = 119/245 (48%), Gaps = 17/245 (6%)

Query: 32  FPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPF-- 89
             + T    F P         +  +SE + +     + +  E+ P +    E+ EF    
Sbjct: 19  VDEITIDQVFTP---------EDFSSEHKMIAKTTEDFIVNEVLPELEY-LEQHEFDRSV 68

Query: 90  HVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIA 148
            ++ + G L + G  + + YG  G     +A+   + +R     +     H  +  L I 
Sbjct: 69  RLLKEAGELGLLGADVPEEYGGIGLDKVSSALIAEKFSRAG-GFAITHGAHVGIGSLPIV 127

Query: 149 LCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGG--WILEGQKRWI 206
           L G+EEQK+KYLP LA    +A +ALTEP  GSDA    TTA     G  ++L G+K+WI
Sbjct: 128 LFGNEEQKKKYLPLLATGEKLAAYALTEPGSGSDALGAKTTARLNAEGTHYVLNGEKQWI 187

Query: 207 GNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVP 266
            NS FADV +++A+       + ++V+KD  G++ +  E K+G++      ++L+   VP
Sbjct: 188 TNSAFADVFIVYAK-IDGEHFSAFIVEKDYAGVSTSPEEKKMGIKCSSTRTLILEDALVP 246

Query: 267 DEDRL 271
            E+ L
Sbjct: 247 KENLL 251

>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata} Length = 439

 Score =  182 bits (464), Expect = 3e-54
 Identities = 48/241 (19%), Positives = 88/241 (36%), Gaps = 10/241 (4%)

Query: 37  PASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLG 96
           P       ++        +T   + +  ++   +   I    AE+     FP      L 
Sbjct: 4   PPWTARQDSTTGLYAP--VTPAGRVLLDRLAAHLP-RIRSTAAEHDRDGTFPTDTFDALR 60

Query: 97  ALRVAGGTI-KGYGCPGH-SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEE 154
              + G T+    G  G   +   A+A+  +AR DAS +  + +  S  +         +
Sbjct: 61  KDGLMGATVPAELGGLGVDRLYDVAVALLAVARADASTALALHMQLSRGLTLGYEWRHGD 120

Query: 155 QKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADV 214
           ++ + L        +A  A+         +A+ T      GGW+L G+K  +  +     
Sbjct: 121 ERARTLAERILRGMVAGDAVVCSGIKDHHTAVTTLRPDGAGGWLLSGRKTLVSMAPVGTH 180

Query: 215 LVIFARNTTTNQ----INGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDR 270
            VI AR T        +   +V +D PG TV    + +G+R     DI+     +P +  
Sbjct: 181 FVINAR-TDGTDGPPRLASPVVTRDTPGFTVLDNWDGLGMRASGTVDIVFDDCPIPADHV 239

Query: 271 L 271
           L
Sbjct: 240 L 240

>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A* Length = 439

 Score =  175 bits (446), Expect = 1e-51
 Identities = 45/254 (17%), Positives = 84/254 (33%), Gaps = 38/254 (14%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEY------WEKAEFPFHVIPKLGALRVAGGTI-KG 107
           L+  +   R   +      +    AEY        + +       +     +    +   
Sbjct: 6   LSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIP 65

Query: 108 YGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLA--Q 165
            G    S+   +I + E+  V+ + S   +V ++L ++ + LC S   ++K+L      +
Sbjct: 66  LGGTMESLVHESIILEELFAVEPATSI-TIVATALGLMPVILCDSPSLQEKFLKPFISGE 124

Query: 166 LNTIACWALTEPAYGSD-----ASALNTTATKVEGGWILEGQKRWIGNS-----TFADVL 215
              +A    +EP   ++        L TTA KV   W++ G+K W  NS       AD+ 
Sbjct: 125 GEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLA 184

Query: 216 VIFAR------------NTTTNQINGYLVKKDAPGLT------VTKIENKIGLRIVQNGD 257
            +  R                 QI   LV ++           +       G        
Sbjct: 185 CVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTSGPH 244

Query: 258 ILLKKVFVPDEDRL 271
               +  VP E+ L
Sbjct: 245 TRFTEFHVPHENLL 258

>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A* Length = 403

 Score =  170 bits (434), Expect = 3e-50
 Identities = 54/224 (24%), Positives = 90/224 (40%), Gaps = 10/224 (4%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
            T+E +A+R  VR   E+E+ P   E+    E P  +  K   L + G    +  G  G 
Sbjct: 26  TTAEREALRKTVRAFAEREVLPHAHEWERAGEIPRELHRKAAELGLLGAGFPEDAGGSGG 85

Query: 114 SVTGAAIAIAEIARVDASCSTF-ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACW 172
                 +   E+    +    +  L    +A+  +   G +     Y+    +   I   
Sbjct: 86  DGADPVVICEEMHYAGSPGGVYASLFTCGIAVPHMIASGDQRLIDTYVRPTLRGEKIGAL 145

Query: 173 ALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQ-----I 227
           A+TEP  GSD   L T A      +++ G K +I +   AD +V  AR   T       +
Sbjct: 146 AITEPGGGSDVGHLRTRADLDGDHYVINGAKTYITSGVRADYVVTAAR---TGGPGAGGV 202

Query: 228 NGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           +  +V K  PG  VT+  +K+G R     ++    V VP  + +
Sbjct: 203 SLIVVDKGTPGFEVTRKLDKMGWRSSDTAELSYTDVRVPVANLV 246

>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus} Length = 385

 Score =  169 bits (430), Expect = 7e-50
 Identities = 63/225 (28%), Positives = 103/225 (45%), Gaps = 9/225 (4%)

Query: 54  LLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPG 112
            L  E    R   R+ +EKE  P   ++ ++   P     K+G        + + YG   
Sbjct: 9   YLREEHHMFRAAFRKFLEKEAYPHYNDWEKRGIIPRSFWAKMGENGFLCPWVDEKYGGLN 68

Query: 113 HSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACW 172
                + +   E+ +V +S    I +H+ +    IA  G+EEQKQK+LP       I   
Sbjct: 69  ADFAYSVVINEELEKVGSS-LVGIGLHNDIVTPYIASYGTEEQKQKWLPKCVTGELITAI 127

Query: 173 ALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQ------ 226
           A+TEP  GSD + ++TTA K    +I+ GQK +I N   AD++V+  + T          
Sbjct: 128 AMTEPGAGSDLANISTTAVKDGDYYIVNGQKTFITNGIHADLIVVACK-TDPQAKPPHRG 186

Query: 227 INGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           I+  +V++D PG T  +   K+GL      ++  +   VP  + L
Sbjct: 187 ISLLVVERDTPGFTRGRKLEKVGLHAQDTAELFFQDAKVPAYNLL 231

>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea} Length = 395

 Score =  167 bits (426), Expect = 4e-49
 Identities = 47/230 (20%), Positives = 85/230 (36%), Gaps = 20/230 (8%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
           LT   + V   +   +   I+   A+      FP     +   L + G T+    G  G 
Sbjct: 9   LTPAGRTVVDLLAGVIP-RISAEAADRDRTGTFPVEAFEQFAKLGLMGATVPAELGGLGL 67

Query: 114 -SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCG-----SEEQKQKYLPSLAQLN 167
             +   A A+  +A  DAS +    V  S  +                 ++ L ++A+  
Sbjct: 68  TRLYDVATALMRLAEADASTALAWHVQLSRGLTLTYEWQHGTPPVRAMAERLLRAMAEGE 127

Query: 168 TIACWALTEPAYGSDASALNTTATK-VEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQ 226
              C A        DA  + T       GGW+L G+K  +  +  A    + A+    + 
Sbjct: 128 AAVCGA------LKDAPGVVTELHSDGAGGWLLSGRKVLVSMAPIATHFFVHAQ-RRDDD 180

Query: 227 ----INGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLP 272
               +   +V +DAPGLTV    + +G+R     +++  +  V  ++ L 
Sbjct: 181 GSVFLAVPVVHRDAPGLTVLDNWDGLGMRASGTLEVVFDRCPVRADELLE 230

>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus} Length = 403

 Score =  167 bits (426), Expect = 5e-49
 Identities = 54/225 (24%), Positives = 96/225 (42%), Gaps = 6/225 (2%)

Query: 52  DDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGC 110
           +   T E +A+    R  +E+EIAP +AE+    E P  +      + + G    +  G 
Sbjct: 26  EAWTTPERRALSQMARSFVEREIAPKLAEWEHVGEIPRDLHLNAAEVGLLGIGFPEEVGG 85

Query: 111 PGHSVTGAAIAIAEIARVDASCS-TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTI 169
            G +   +A+    I     S      L    +A+  IA  GS+   ++Y+        I
Sbjct: 86  SGGNAIDSALVTEAILAAGGSTGVCAALFTHGIALPHIAANGSDALIERYVRPTLAGKMI 145

Query: 170 ACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQING 229
               +TEP  GSD + L T A +    +++ G K +I +   AD +    R T      G
Sbjct: 146 GSLGVTEPGAGSDVANLRTRAVREGDTYVVNGAKTFITSGVRADFVTTAVR-TGGPGYGG 204

Query: 230 ---YLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
               ++ K++PG  V++  +K+G R     ++    V VP ++ +
Sbjct: 205 VSLLVIDKNSPGFEVSRRLDKMGWRCSDTAELSFVDVRVPADNLV 249

>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina} Length = 438

 Score =  168 bits (428), Expect = 5e-49
 Identities = 42/252 (16%), Positives = 78/252 (30%), Gaps = 37/252 (14%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEY-------WEKAEFPFHVIPKLGALRVAGGTI-K 106
           L++ ++      R      + P    Y         + +          +  +  G I  
Sbjct: 7   LSASQKGTYQAARSLARNLLMPARQTYLQHPPNSPLRFQSTQPTYAAAVSAGILKGQISP 66

Query: 107 GYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLA-- 164
            +G  G ++  +AI + E   V+ S +  I     L +  I L  +  Q  ++L      
Sbjct: 67  AHGGTGGTLIESAILVEECYSVEPSAALTIFATG-LGLTPINL-AAGPQHAEFLAPFLSG 124

Query: 165 QLNTIACWALTEPAYGSDA-----SALNTTATKVEGGWILEGQKRWIGNSTFAD------ 213
           + + +A    +EP   ++A         TTA      W++ G+K W  N    D      
Sbjct: 125 EGSPLASLVFSEPGGVANALEKGAPGFQTTARLEGDEWVINGEKMWATNCAGWDFKGCDL 184

Query: 214 --VLVIFARNTTTNQING------------YLVKKDAPGLTVTKIENKIGLRIVQNGDIL 259
             V+   A        +              L +       V +     G   V    + 
Sbjct: 185 ACVVCRDATTPLEEGQDPENKVMIILVTRADLDRNGEGSFEVLRHVATPGHTSVSGPHVR 244

Query: 260 LKKVFVPDEDRL 271
              V VP ++ L
Sbjct: 245 YTNVRVPTKNVL 256

>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A* Length = 661

 Score =  114 bits (286), Expect = 2e-28
 Identities = 36/177 (20%), Positives = 70/177 (39%), Gaps = 18/177 (10%)

Query: 113 HSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACW 172
           + ++     +     V       + +H  + + T+    + EQ++++      L     +
Sbjct: 77  YGISDPEEIMWFKNSVHRGHPEPLDLHLGMFLPTLLHQATAEQQERFFMPAWNLEITGTY 136

Query: 173 ALTEPAYGSDASALNTTATKVEGG--WILEG-----QKRWIGNS-TFADVLVIFARNTTT 224
           A TE  +G+    L TTAT       +IL        K W G     ++  ++ A+  T 
Sbjct: 137 AQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVTSIKWWPGGLGKTSNHAIVLAQLITQ 196

Query: 225 NQ---INGYLV-------KKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
            +   ++ ++V        K  PG+TV  I  K G   + NG + +    +P E+ L
Sbjct: 197 GECYGLHAFVVPIREIGTHKPLPGITVGDIGPKFGYEEMDNGYLKMDNYRIPRENML 253

>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A* Length = 659

 Score =  111 bits (278), Expect = 3e-27
 Identities = 42/171 (24%), Positives = 70/171 (40%), Gaps = 23/171 (13%)

Query: 123 AEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSD 182
           A   R       ++ +H  + +  I   G+EEQ++K+L    ++  I C+A TE  +GS+
Sbjct: 86  AGRLRHFIDQPAYVDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSN 145

Query: 183 ASALNTTATKVEGG--WILEG-----QKRWIGNS-TFADVLVIFARNTTTN--------- 225
              L TTAT       +++        K W G     +   V++AR   TN         
Sbjct: 146 VQGLETTATLDPKTDEFVIHTPTQTASKWWPGGLGKVSTHAVVYAR-LITNGKDYGIHGF 204

Query: 226 --QINGYLVKKDAPGLTVTKIENKIG---LRIVQNGDILLKKVFVPDEDRL 271
             Q+         P +TV  I  K+G      + NG ++   V +P +  L
Sbjct: 205 IVQLRSLEDHSPLPNITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQML 255

>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A* Length = 422

 Score =  102 bits (257), Expect = 6e-25
 Identities = 35/225 (15%), Positives = 69/225 (30%), Gaps = 17/225 (7%)

Query: 56  TSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHS 114
                ++  K+++ +  +IA       +    P   I  L  + +      K YG    S
Sbjct: 34  DVSGVSMLEKIQQ-ILPQIAKNAESAEQLRRVPDENIKLLKEIGLHRAFQPKVYGGLEMS 92

Query: 115 VTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWAL 174
           +   A  I  +A   A  +    +  + +   IA+   + Q +              W  
Sbjct: 93  LPDFANCIVTLAGACAGTAWAFSLLCTHSHQ-IAMFSKQLQDEI-------------WLK 138

Query: 175 TEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGY-LVK 233
              A  S + A      +VEGG IL G   W      A+  ++       +    Y    
Sbjct: 139 DPDATASSSIAPFGKVEEVEGGIILNGDYGWSSGCDHAEYAIVGFNRFDADGNKIYSFGV 198

Query: 234 KDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQ 278
                  +        ++   +  + L  VF+P+       +  +
Sbjct: 199 IPRSDYEIVDNWYAQAIKSSGSKMLKLVNVFIPEYRISKAKDMME 243

>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A Length = 394

 Score = 82.0 bits (203), Expect = 1e-17
 Identities = 39/222 (17%), Positives = 72/222 (32%), Gaps = 32/222 (14%)

Query: 72  KEIAPIMAEYWEKAE----FPFHVIPKLGALRVAG-GTI---KGYGCPGHSVTGAAIAIA 123
             + P + E  ++ E     P   +    AL+  G   +   + +G           A+ 
Sbjct: 17  DALLPTLRERAQETEDLRRIPDDSM---KALQETGFFRLLQPEQWGGYQADPVLFYSAVR 73

Query: 124 EIARVDAS---CSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYG 180
           +IA    S    S+ I VH+      +AL   + Q+               W        
Sbjct: 74  KIASACGSTGWVSSIIGVHN----WHLALFSQQAQEDV-------------WGNDTDVRI 116

Query: 181 SDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYL-VKKDAPGL 239
           S + A       V+GG+ + G   W      A   V+        +   ++         
Sbjct: 117 SSSYAPMGAGQVVDGGYTVNGAWAWSSGCDHASWAVLGGPVIKDGRPVDFVSFLIPREDY 176

Query: 240 TVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTS 281
            +  + N +GLR   +  ++++ VFVP    L        T+
Sbjct: 177 RIDDVWNVVGLRGTGSNTVVVEDVFVPTHRVLSFKAMSNLTA 218

>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens} Length = 428

 Score = 75.8 bits (187), Expect = 1e-15
 Identities = 59/283 (20%), Positives = 106/283 (37%), Gaps = 57/283 (20%)

Query: 31  AFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWE------K 84
           +  + T ++  P   +    F    T + Q V +KV+  M++ I P   E  E       
Sbjct: 1   SMSKRTFSTVLPQIDTTGQLFV--QTRKGQEVLIKVKHFMKQHILPAEKEVTEFYVQNEN 58

Query: 85  AEFPFHVIPKLGALRVAGGTIKGYGC--------PGHSVTGAAIAIAEIARVDASCSTFI 136
           +   +     +  L+      K  G          G S    A+ IAE            
Sbjct: 59  SVDKWGKPLVIDKLKEM---AKVEGLWNLFLPAVSGLSHVDYAL-IAEE----------- 103

Query: 137 LVHSSLA-------------MLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAY-GSD 182
                 A             M  + L GSEEQK+++L  L Q N  +C+ +TEP    SD
Sbjct: 104 TGKCFFAPDVFNCQAPDTGNMEVLHLYGSEEQKKQWLEPLLQGNITSCFCMTEPDVASSD 163

Query: 183 ASALNTTATKVEGGWILEGQKRWIGNSTFAD--VLVIFARNTTTNQINGY------LVKK 234
           A+ +  +  + E  +++ G+K W   +      + ++  R T    ++ +      LV  
Sbjct: 164 ATNIECSIQRDEDSYVINGKKWWSSGAGNPKCKIAIVLGR-TQNTSLSRHKQHSMILVPM 222

Query: 235 DAPGLTVTKIENKIGLRIVQNG---DILLKKVFVPDEDRLPGV 274
           + PG+ + +  +  G     +G   +I   +V VP  + + G 
Sbjct: 223 NTPGVKIIRPLSVFGYTDNFHGGHFEIHFNQVRVPATNLILGE 265

>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP} Length = 414

 Score = 65.2 bits (159), Expect = 5e-12
 Identities = 32/223 (14%), Positives = 67/223 (30%), Gaps = 30/223 (13%)

Query: 72  KEIAPIMAEYWEKAE----FPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIA 126
           + +A  +     ++E            L           + YG         A  +  +A
Sbjct: 30  EVVAEEIRGQAVQSEADCRLTDAAAGLLRDSGAIRLLQPRLYGGYEVHPREFAETVMGVA 89

Query: 127 RVDAS---CSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDA 183
            +D +    +  + VH       +A    + Q++              W      + +  
Sbjct: 90  ALDGASGWVTGIVGVHP----WELAFADPQVQEE-------------IWGEDNDTWMASP 132

Query: 184 SALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQING-----YLVKKDAPG 238
            A    AT V+GG++L+G+  +   +       + A               +++      
Sbjct: 133 YAPMGVATPVDGGYVLKGRWSFSSGTDHCQWAFLGAMVGDGEGGIATPSSLHVILPRTDY 192

Query: 239 LTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTS 281
             V    + IGLR   + D+++   FVP    L         +
Sbjct: 193 QIVEDTWDVIGLRGTGSKDLIVDGAFVPGYRTLNAAKVMDGRA 235

>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A* Length = 541

 Score = 60.9 bits (148), Expect = 1e-10
 Identities = 30/155 (19%), Positives = 57/155 (36%), Gaps = 30/155 (19%)

Query: 107 GYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQL 166
           G  CP  ++T AA  +              L+             +     +Y   L   
Sbjct: 130 GSLCPI-TMTFAATPL--------------LLQM--LPAPFQDWTTPLLSDRYDSHLLPG 172

Query: 167 NTIACW----ALTEPAYGSDASALNTTATKVEGG-WILEGQKRWIGNSTFADVLVIFARN 221
                      +TE   GSD  +  T A ++E G + L G K W  +   +D  ++ A+ 
Sbjct: 173 GQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHK-WFFSVPQSDAHLVLAQ- 230

Query: 222 TTTNQINGYLVKKDAP-----GLTVTKIENKIGLR 251
            T   ++ + V +  P      + + ++++K+G R
Sbjct: 231 -TAGGLSCFFVPRFLPDGQRNAIRLERLKDKLGNR 264

>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1 Length = 490

 Score = 56.7 bits (136), Expect = 4e-09
 Identities = 28/186 (15%), Positives = 54/186 (29%), Gaps = 35/186 (18%)

Query: 121 AIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQK--------QKYLPSLAQLNTIACW 172
               + +  ASC    +   +   +       +++          +YL  + + + I   
Sbjct: 88  MQRLLGQKTASCFQRCVGMDAFNAVFSTTYEIDQKYGTNYHKNFTEYLKYIQENDLIVDG 147

Query: 173 ALTEPAYG--------SDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTT 224
           A+T+P            D         K E G ++ G K     S  +   +I      T
Sbjct: 148 AMTDPKGDRGLAPSAQKDPDLFLRIVEKREDGIVVRGAKAHQTGSINSHEHIIMPTIAMT 207

Query: 225 NQINGY----LVKKDAPGLTVTKIENKIGLRIVQNGD---------------ILLKKVFV 265
                Y        DA GL +         R ++ G                ++   VF+
Sbjct: 208 EADKDYAVSFACPSDADGLFMIYGRQSCDTRKMEEGADIDLGNKQFGGQEALVVFDNVFI 267

Query: 266 PDEDRL 271
           P++   
Sbjct: 268 PNDRIF 273

>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A* Length = 481

 Score = 56.3 bits (135), Expect = 4e-09
 Identities = 22/140 (15%), Positives = 37/140 (26%), Gaps = 22/140 (15%)

Query: 154 EQKQKYLPSLAQLNTIACWALTEPAYG--------SDASALNTTATKVEGGWILEGQKRW 205
           E  + Y   L   +     ALT P            D         + E G ++ G +  
Sbjct: 124 ENVRNYYRYLRDQDLATTHALTNPQVNRARPPSGQPDPYIPVGVVKQTEKGIVVRGARMT 183

Query: 206 IGNSTFADVLVIFARNTT---TNQINGYLVKKDAPGLTVTKIENKIGLRIV--------- 253
                  +VL+  +             + +    PGL     E  +G             
Sbjct: 184 ATFPLADEVLIFPSILLQAGSEKYALAFALPTSTPGLHFVCREALVGGDSPFDHPLSSRV 243

Query: 254 --QNGDILLKKVFVPDEDRL 271
              +  ++   V VP E   
Sbjct: 244 EEMDCLVIFDDVLVPWERVF 263

>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia} Length = 515

 Score = 55.3 bits (132), Expect = 1e-08
 Identities = 22/137 (16%), Positives = 40/137 (29%), Gaps = 19/137 (13%)

Query: 154 EQKQKYLPSLAQLNTIACWALTEP------AYGSDASALNTTATKVEGGWILEGQKRWIG 207
           +    +L  L + +        +P            S       K + G I+ G K    
Sbjct: 133 QNIHNFLKLLREKDLNCPLNFVDPQTDRSSDAAQARSPNLRIVEKTDDGIIVNGVKAVGT 192

Query: 208 NSTFADVLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGD------- 257
              F D + I           Q+    +  + PG+TV   E+ +     ++         
Sbjct: 193 GIAFGDYMHIGCLYRPGIPGEQVIFAAIPTNTPGVTVFCRESTVKNDPAEHPLASQGDEL 252

Query: 258 ---ILLKKVFVPDEDRL 271
               +   VF+P E   
Sbjct: 253 DSTTVFDNVFIPWEQVF 269

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	325
2ix5_A	436	Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4,	100.0
3sf6_A	403	Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB	100.0
2d29_A	387	Acyl-COA dehydrogenase; structural genomics, NPPSF	100.0
3ii9_A	396	Glutaryl-COA dehydrogenase; slipchip, microfluidic	100.0
3swo_A	399	Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d	100.0
3p4t_A	403	Putative acyl-COA dehydrogenase; ssgcid, structura	100.0
2eba_A	385	Putative glutaryl-COA dehydrogenase; thermus therm	100.0
1ukw_A	379	Acyl-COA dehydrogenase; oxidoreductase, riken stru	100.0
3nf4_A	387	Acyl-COA dehydrogenase; seattle structural genomic	100.0
1buc_A	383	Butyryl-COA dehydrogenase; acyl-COA dehydrogenase	100.0
2vig_A	391	Short-chain specific acyl-COA dehydrogenase,; fatt	100.0
3pfd_A	393	Acyl-COA dehydrogenase; structural genomics, seatt	100.0
2jif_A	404	Short/branched chain specific acyl-COA dehydrogen;	100.0
3r7k_A	403	Probable acyl COA dehydrogenase; ssgcid, structura	100.0
2dvl_A	372	Acyl-COA dehydrogenase; structural genomics, NPPSF	100.0
1egd_A	396	Medium chain acyl-COA dehydrogenase; flavoprotein,	100.0
2pg0_A	385	Acyl-COA dehydrogenase; GK1316, geobacillus kausto	100.0
1rx0_A	393	Acyl-COA dehydrogenase family member 8, mitochondr	100.0
1ivh_A	394	Isovaleryl-COA dehydrogenase; oxidoreductase, acyl	100.0
2z1q_A	577	Acyl-COA dehydrogenase; FAD, structural genomics,	100.0
1siq_A	392	GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog	100.0
3mpi_A	397	Glutaryl-COA dehydrogenase; alpha-beta fold, oxido	100.0
4hr3_A	415	Putative acyl-COA dehydrogenase; ssgcid, seattle s	100.0
2uxw_A	607	VERY-long-chain specific acyl-COA dehydrogenase; f	100.0
1r2j_A	366	Protein FKBI; polyketide synthase, polyketide, acy	100.0
3owa_A	597	Acyl-COA dehydrogenase; structural genomics, cente	100.0
3mkh_A	438	Nitroalkane oxidase; oxidoreductase flavoenzyme, a	100.0
2c12_A	439	Nitroalkane oxidase; oxidoreductase, flavoenzyme,	100.0
2wbi_A	428	Acyl-COA dehydrogenase family member 11; human, ph	100.0
3mxl_A	395	Nitrososynthase; flavin monooxygenase, acyl-COA de	100.0
3m9v_A	439	FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO	100.0
2or0_A	414	Hydroxylase; APC7385, rhodococcus SP. RHA1, struct	100.0
2rfq_A	394	3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1	100.0
2jbr_A	422	P-hydroxyphenylacetate hydroxylase C2 oxygenase C;	100.0
1w07_A	659	Acyl-COA oxidase; oxidoreductase, peroxisomal beta	100.0
3djl_A	541	Protein AIDB; alpha helix, beta-barrel, FAD, flavo	100.0
2ddh_A	661	Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl	100.0
1u8v_A	490	Gamma-aminobutyrate metabolism dehydratase/isomera	99.94
2yyk_A	481	4-hydroxyphenylacetate-3-hydroxylase; structurome,	99.93
3hwc_A	515	Chlorophenol-4-monooxygenase component 2; beta bar	99.89
4g5e_A	517	2,4,6-trichlorophenol 4-monooxygenase; oxidoreduct	99.66

>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A*

Probab=100.00  E-value=2.1e-57  Score=436.30  Aligned_cols=319  Identities=72%  Similarity=1.148  Sum_probs=283.5

Q ss_pred             CcccCCCCCchhhhhhhhhcccCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHHHHHHHhhccccHHH
Q 020535            1 MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAE   80 (325)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~   80 (325)
                      |.+.++..++....+..+.+++.++.+....++..+|++.+|+...|+++|++.+++|++++++.+++|+++++.|...+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~l~~~~r~f~~~~~~p~~~~   80 (436)
T 2ix5_A            1 MAVLSSADRASNEKKVKSSYFDLPPMEMSVAFPQATPASTFPPCTSDYYHFNDLLTPEEQAIRKKVRECMEKEVAPIMTE   80 (436)
T ss_dssp             ----------------CCSSSSSCCCCHHHHCCSSCCTTSCCCCCSCTTCGGGGSCHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             CcchhhhhhhccccccchhhcCCChhhhhhhccccCCCCCCCCcccchhhcCCCCCHHHHHHHHHHHHHHHhhCChhhHH
Confidence            45556666666666777888888988888777777788889988889999988899999999999999999999998888


Q ss_pred             HHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhh
Q 020535           81 YWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKY  159 (325)
Q Consensus        81 ~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~  159 (325)
                      .++.+.+|.++|++|++.||+++ +| +|||.|++..+.+.++|+++++++++++++.+|..++...|..+|+++||++|
T Consensus        81 ~~~~~~~p~~~~~~l~e~Gl~~l~~p-e~GG~G~~~~~~~~v~eela~~~~~~~~~~~~~~~~~~~~l~~~gt~~qk~~~  159 (436)
T 2ix5_A           81 YWEKAEFPFHITPKLGAMGVAGGSIK-GYGCPGLSITANAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKY  159 (436)
T ss_dssp             HHHHTCCCGGGHHHHHTTTCTTTTCC-STTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHTTHHHHHHHHSCHHHHHHH
T ss_pred             HHhcCCCCHHHHHHHHHcCCCcCcCC-CCCCCCCCHHHHHHHHHHHHhhCccHHHHHHhHHHHHHHHHHHhCCHHHHHHH
Confidence            78888999999999999999999 88 99999999999999999999999998876767766677788999999999999


Q ss_pred             chhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCCCCCEEEEEEEeCCCCCeEEEEEeCCCCCe
Q 020535          160 LPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGL  239 (325)
Q Consensus       160 l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~~Ad~~~v~a~~~~~~~~~~~lv~~~~~Gv  239 (325)
                      +|++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.||||+..||+++|+|++++++++++|+||++.|||
T Consensus       160 l~~l~~G~~~~a~a~tEp~~GSd~~~~~t~A~~~gdg~vLnG~K~~is~a~~Ad~~lv~Ar~~~~~~~~~flV~~~~pGv  239 (436)
T 2ix5_A          160 LPSLAQLNTVACWALTEPDNGSDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGL  239 (436)
T ss_dssp             HHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTTTCSEEEEEEEETTTSSEEEEEEETTCTTE
T ss_pred             HHHHhCCCeeeEEEecCCCCCCCcccceEEEEEeCCEEEEeeeccCCCCCcccCEEEEEEEECCCCcEEEEEEECCCCCe
Confidence            99999999999999999999999999999999999999999999999999999999999999755679999999999999


Q ss_pred             EEeccCCccCccccceeeEEEeeeeeCCCCCcCCCCChHHHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcc
Q 020535          240 TVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDS  316 (325)
Q Consensus       240 ~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~~g~~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~  316 (325)
                      ++.+.|+++|+++++++++.|+||+||.++++|..+++......++..|+  ++.++|     +++++++. ++|+++|+
T Consensus       240 ~v~~~~~~~G~r~~~~~~v~fddv~VP~~~~lg~~~g~~~~~~~l~~~r~~~aa~~~G-----~a~~al~~a~~ya~~R~  314 (436)
T 2ix5_A          240 KATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIG-----ISMGIYDMCHRYLKERK  314 (436)
T ss_dssp             EEEECCCBSSSTTSCEEEEEEEEEEEEGGGBCTTCSSHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCE
T ss_pred             EeeccccccCCCcCCceeEEeccEEECHHHcCCccccHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhCe
Confidence            99999999999999999999999999999999987889999999999998  888899     99999999 99999999


Q ss_pred             cCCCCCCCC
Q 020535          317 GWLAPLQII  325 (325)
Q Consensus       317 ~fG~pl~~~  325 (325)
                      |||+||+++
T Consensus       315 qfG~pi~~~  323 (436)
T 2ix5_A          315 QFGAPLAAF  323 (436)
T ss_dssp             ETTEEGGGS
T ss_pred             eCCcchhhc
Confidence            999999874

>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis}

Probab=100.00  E-value=4e-54  Score=409.98  Aligned_cols=277  Identities=34%  Similarity=0.601  Sum_probs=261.3

Q ss_pred             CCCCCCCcccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCC-hhHHHHHHhCcccCC-cccCCCCCCccHHHH
Q 020535           41 FPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFP-FHVIPKLGALRVAGG-TIKGYGCPGHSVTGA  118 (325)
Q Consensus        41 ~~~~~~d~~~~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p-~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~  118 (325)
                      +....+|+..|++.++++++++++.+++|+++++.|.+.+.++.+.+| .++|++|++.||+++ + ++|||.|++..+.
T Consensus        16 ~~~~~~~~~~m~~~l~~e~~~l~~~~r~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~Gl~~l~~-~e~GG~g~~~~~~   94 (403)
T 3sf6_A           16 QRRGADDLIGINAVLSAEEREIRDTVRSVVQRRIKPHIASWYEDGELPARELAVELGELGLLGMHL-KGYGCAGMSAVAY   94 (403)
T ss_dssp             -CCCHHHHHTCGGGSCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCHHHHHHHHHHTTCSSTTS-CSTTCCCCCHHHH
T ss_pred             hcCCCcchhccCCCCCHHHHHHHHHHHHHHHHhcChhHHHHHhcCCCCHHHHHHHHHHCCCCcccc-hhhCCCCCCHHHH
Confidence            344556888899999999999999999999999999999999999999 999999999999999 9 9999999999999


Q ss_pred             HHHHHHHHccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEE
Q 020535          119 AIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWI  198 (325)
Q Consensus       119 ~~v~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~  198 (325)
                      +.++|++++.++++++++.+|..++...|..+|+++||++|+|++++|+.++|+++|||++|||+..++|+|++++|||+
T Consensus        95 ~~v~eela~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~  174 (403)
T 3sf6_A           95 GLACLELEAGDSGIRSLVSVQGSLAMYAIHAFGSDEQKDQWLPDMASGHRIGCFGLTEPDHGSDPAGMRTRATRSGDDWI  174 (403)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEE
T ss_pred             HHHHHHHHHhcccHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEEccCCCCCCchhcEEEEEEECCEEE
Confidence            99999999999998887777766677889999999999999999999999999999999999999999999999999999


Q ss_pred             EEeEeecccCCCCCCEEEEEEEeCCCCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCCCChH
Q 020535          199 LEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQ  278 (325)
Q Consensus       199 lnG~K~~it~~~~Ad~~~v~a~~~~~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~~g~~  278 (325)
                      |||+|.||||+..||+++|+|++++  ++++|+||++.|||++.+.|+++|+|+++++++.|+||+||.+++||...|+.
T Consensus       175 lnG~K~~is~a~~Ad~~~v~ar~~~--g~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~fd~v~Vp~~~~lg~~~g~~  252 (403)
T 3sf6_A          175 LTGTKMWITNGSVADVAVVWARTDE--GIRGFVVPTDTPGFTANTIKSKMSLRASVTSELVLDGVRLPDSARLPGATSLG  252 (403)
T ss_dssp             EEEEEEEEETGGGCSEEEEEEEETT--EEEEEEEETTSTTEEEEECCSCSSCTTSCEEEEEEEEEEEEGGGBCTTCCSTH
T ss_pred             EEEEEEeecCCcccCEEEEEEEeCC--ceEEEEEECCCCCeEecCCCCccCCCCCceeEEEEccEEEcHHHccCCChhHH
Confidence            9999999999999999999999873  69999999999999999999999999999999999999999999999877999


Q ss_pred             HHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535          279 DTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       279 ~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~  325 (325)
                      .....++..|+  ++.++|     +++++++. ++|+++|+|||+||+++
T Consensus       253 ~~~~~l~~~r~~~aa~~~G-----~a~~al~~a~~ya~~R~~fg~pi~~~  297 (403)
T 3sf6_A          253 APLRCLNEARFGIVFGALG-----AARDCLETALAYACSREQFDRPIGGF  297 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCEETTEEGGGS
T ss_pred             HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhCcccCCcchhh
Confidence            99999999998  888889     99999999 99999999999999874

>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A*

Probab=100.00  E-value=7.2e-54  Score=406.10  Aligned_cols=271  Identities=32%  Similarity=0.478  Sum_probs=253.1

Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHcc
Q 020535           50 QFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARV  128 (325)
Q Consensus        50 ~~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~  128 (325)
                      .|++.++++++++++.+++|+++++.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|++++.
T Consensus         2 ~m~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~   81 (387)
T 2d29_A            2 GLWFEEGAEERQVLGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEFGVFGALVPEAYGGAGLSTRLFARMVEAIAYY   81 (387)
T ss_dssp             CCTTSCCHHHHHHHHHHHHHHHHHTGGGHHHHHHHCCCCHHHHHHHHTTTGGGSSSCGGGTCCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhcchhHHHHhhcCCCCHHHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHHHHHhh
Confidence            466778999999999999999999999998888899999999999999999999 9999999999999999999999999


Q ss_pred             CCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccC
Q 020535          129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGN  208 (325)
Q Consensus       129 ~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~  208 (325)
                      ++++++.+.+|..++...|..+|+++||++|+|++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.||||
T Consensus        82 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~  161 (387)
T 2d29_A           82 DGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQ  161 (387)
T ss_dssp             CHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTSSSCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEET
T ss_pred             ChHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEeCCCCCCCCHhhCceEEEEeCCEEEEEeEEeccCC
Confidence            99988766676546677889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEEeCCC-------CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHH
Q 020535          209 STFADVLVIFARNTTT-------NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDT  280 (325)
Q Consensus       209 ~~~Ad~~~v~a~~~~~-------~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~  280 (325)
                      +..||+++|+++++++       .++++|+||++.|||++.+.|+++|+++++++++.|+||+||.++++|.. .|+...
T Consensus       162 ~~~Ad~~~v~a~~~~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~  241 (387)
T 2d29_A          162 GSVAGVYVVMARTDPPPSPERKHQGISAFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGERGKGFYDV  241 (387)
T ss_dssp             TTTCSEEEEEEECSCCSCGGGTTTTEEEEEEECCSSSEEECCCCCCSSCTTSCEEEEEEEEEEEEGGGEESSTTBHHHHH
T ss_pred             CCcCCEEEEEEEeCCccccCCCCCCeEEEEEeCCCCCeeccCcccccCCCCCCeeEEEEeeEEECHHHcCCCCCccHHHH
Confidence            9999999999998632       26999999999999999999999999999999999999999999999975 488888


Q ss_pred             HhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535          281 SKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       281 ~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~  325 (325)
                      ...++..|+  ++.++|     +++++++. ++|+++|+|||+||+++
T Consensus       242 ~~~l~~~r~~~aa~~~G-----~a~~al~~a~~ya~~R~~fg~~i~~~  284 (387)
T 2d29_A          242 LRVLDGGRIGIAAMAVG-----LGQAALDYALAYAKGREAFGRPIAEF  284 (387)
T ss_dssp             HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCEETTEEGGGS
T ss_pred             HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhCccCCcchHhh
Confidence            899999998  888889     99999999 99999999999999874

>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A

Probab=100.00  E-value=1.8e-54  Score=411.48  Aligned_cols=275  Identities=32%  Similarity=0.567  Sum_probs=252.6

Q ss_pred             CCcccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHH
Q 020535           46 SDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAE  124 (325)
Q Consensus        46 ~d~~~~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~  124 (325)
                      .|++.|++.++++++++++.+++|+++++.|.+.+.++.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|+
T Consensus        10 ~~~~~m~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~ee   89 (396)
T 3ii9_A           10 DDPLLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTDAAIFREMGEIGLLGPTIPEQYGGPGLDYVSYGLIARE   89 (396)
T ss_dssp             TSTTCGGGGSCHHHHHHHHHHHHHCCCCCHHHHHHHHHHTCCCTHHHHHHHHTTCSSTTSCGGGTSCCCCHHHHHHHHHH
T ss_pred             CcccccCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHhhCCCCHHHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHH
Confidence            4667888889999999999999999999999999999999999999999999999999 999999999999999999999


Q ss_pred             HHccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEee
Q 020535          125 IARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKR  204 (325)
Q Consensus       125 la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~  204 (325)
                      +++.++++++.+.+|..++..+|..+|+++||++|+|++++|+.++|+++|||++|||+..+.|+|++++|||+|||+|.
T Consensus        90 l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~  169 (396)
T 3ii9_A           90 VERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKM  169 (396)
T ss_dssp             HHTTCHHHHHHHHCCCCCCCHHHHHHSCHHHHHHHHHHHHHTSSCEEEECCCCC------CCCCEEEEETTEEEEEEEEE
T ss_pred             HHHhChhHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCChhhCeeEEEEeCCEEEEEEEEE
Confidence            99999998877777766666778999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCEEEEEEEeCC--CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCCCChHHHHh
Q 020535          205 WIGNSTFADVLVIFARNTT--TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSK  282 (325)
Q Consensus       205 ~it~~~~Ad~~~v~a~~~~--~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~~g~~~~~~  282 (325)
                      |+||+..||+++|++++++  ..++++|+||++.|||++.+.|+++|+++++++++.|+||+||.+++++...|+.....
T Consensus       170 ~vs~a~~Ad~~~v~a~~~~~g~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~Vp~~~~l~~~~g~~~~~~  249 (396)
T 3ii9_A          170 WITNSPIADVFVVWAKLDEDGRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPHVKGLRGPFT  249 (396)
T ss_dssp             EEETGGGCSEEEEEEEEEETTEEEEEEEEEETTCTTEECCBCCCCSSCTTSCEEEEEEEEEEEEGGGBCTTCCSTHHHHH
T ss_pred             eECCCccCCEEEEEEEecCCCCCceEEEEEecCCCCeEeccccccccCCcCCeeEEEEccEEECHHHccCCChHHHHHHH
Confidence            9999999999999999852  23589999999999999999999999999999999999999999999988779999999


Q ss_pred             hchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535          283 VSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       283 ~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~  325 (325)
                      .++..|+  ++.++|     +++++++. ++|+++|+|||+||+++
T Consensus       250 ~l~~~r~~~aa~~~G-----~a~~al~~a~~ya~~R~~fg~~i~~~  290 (396)
T 3ii9_A          250 CLNSARYGIAWGALG-----AAESCWHIARQYVLDRKQFGRPLAAN  290 (396)
T ss_dssp             HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCEETTEEGGGS
T ss_pred             HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhCeeCCCchhhh
Confidence            9999998  788889     99999999 99999999999999874

>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis}

Probab=100.00  E-value=7.4e-54  Score=407.60  Aligned_cols=273  Identities=30%  Similarity=0.572  Sum_probs=259.0

Q ss_pred             CCCcccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHH
Q 020535           45 ASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIA  123 (325)
Q Consensus        45 ~~d~~~~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e  123 (325)
                      ..|+++|++.++++++++++.+++|+.+++.|.+.+.++.+.+|.++|++|++.||+++ + ++|||.|+++.+.+.++|
T Consensus        16 ~~~~~~m~~~l~~e~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~-~e~GG~g~~~~~~~~v~e   94 (399)
T 3swo_A           16 PLELFDTDRLLDQDERDIAATVRQFVDTRLKPNVEGWFESATLPSELAKEFGNLGVLGMHL-QGYGCAGTNAVSYGLACM   94 (399)
T ss_dssp             HHHHHTGGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCTTHHHHHHHHTCTTTTS-CSTTCCCCCHHHHHHHHH
T ss_pred             ccccccCCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHhhCCCCHHHHHHHHHCCCCcCCh-hhhCCCCCCHHHHHHHHH
Confidence            35788899999999999999999999999999999999999999999999999999999 9 999999999999999999


Q ss_pred             HHHccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEe
Q 020535          124 EIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQK  203 (325)
Q Consensus       124 ~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K  203 (325)
                      ++++.++++++.+.+|..++...|..+|+++||++|+|++++|+.++|+++|||++|||+..+.|+|++++|||+|||+|
T Consensus        95 el~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K  174 (399)
T 3swo_A           95 ELEAGDSGFRSFVSVQGSLSMFSIYRYGSEEQKNEWLPRLAAGDAIGCFGLTEPDFGSNPAGMRTRARRDGSDWILNGTK  174 (399)
T ss_dssp             HHHHHCHHHHHHHHHHTTTHHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEE
T ss_pred             HHHHhCccHHHHHHHHhhhhhhHHHhcCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCCCccceEEEEEeCCEEEEEEEE
Confidence            99999999887777776677788999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecccCCCCCCEEEEEEEeCCCCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCCCChHHHHhh
Q 020535          204 RWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKV  283 (325)
Q Consensus       204 ~~it~~~~Ad~~~v~a~~~~~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~~g~~~~~~~  283 (325)
                      .|+||+..||+++|+|+++  +++++|+||++.|||++.+.|+++|+++++++++.|+||+||.++++|.+.|+......
T Consensus       175 ~~vs~a~~Ad~~~v~a~~~--~g~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~fd~v~Vp~~~~lg~~~g~~~~~~~  252 (399)
T 3swo_A          175 MWITNGNLADVATVWAQTD--DGIRGFLVPTDTPGFTANEIHRKLSLRASVTSELVLDNVRLPASAQLPLAEGLSAPLSC  252 (399)
T ss_dssp             EEEETTTTCSEEEEEEBCT--TSCEEEEEETTSTTEEEEECCCBSSCCSSCEEEEEEEEEEECGGGBCTTCCSTHHHHHH
T ss_pred             EeECCCCccCEEEEEEEeC--CceEEEEEeCCCCCeEeecCcCcccCCCCceeEEEEccEEEcHHHcCCCChhHHHHHHH
Confidence            9999999999999999986  46999999999999999999999999999999999999999999999986799999999


Q ss_pred             chhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535          284 SEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       284 l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~  325 (325)
                      ++..|+  ++.++|     +++++++. ++|+++|+|||+||+++
T Consensus       253 l~~~r~~~aa~~~G-----~a~~al~~a~~~a~~R~~fG~~i~~~  292 (399)
T 3swo_A          253 LNEARFGIVFGALG-----AARDSLETTIAYTQSREVFDKPLSNY  292 (399)
T ss_dssp             HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCEETTEEGGGS
T ss_pred             HHHHHHHHHHHHHH-----HHHHHHHHHHHHHhcCeeCCcchhhC
Confidence            999998  888899     99999999 99999999999999874

>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A*

Probab=100.00  E-value=1.1e-53  Score=406.85  Aligned_cols=276  Identities=22%  Similarity=0.284  Sum_probs=253.8

Q ss_pred             CCCcccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHH
Q 020535           45 ASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIA  123 (325)
Q Consensus        45 ~~d~~~~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e  123 (325)
                      .++.-.|++.++++++++++.+++|+++++.|.+.+.++.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|
T Consensus        16 ~~~~~~M~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~e   95 (403)
T 3p4t_A           16 TQGPGSMSIWTTAEREALRKTVRAFAEREVLPHAHEWERAGEIPRELHRKAAELGLLGAGFPEDAGGSGGDGADPVVICE   95 (403)
T ss_dssp             -------CTTSSHHHHHHHHHHHHHHHHHTTTTHHHHHHHTSCCHHHHHHHHHTTCTTBTSCGGGTCCBCCTHHHHHHHH
T ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHHHHhCchhHHHHhhcCCCCHHHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHH
Confidence            34455677889999999999999999999999999999999999999999999999999 99999999999999999999


Q ss_pred             HHHccCCcc-hhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeE
Q 020535          124 EIARVDASC-STFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQ  202 (325)
Q Consensus       124 ~la~~~~s~-~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~  202 (325)
                      ++++.++++ ++.+..|..++...|..+|+++||++|+|++++|+.++|+++|||++|||+..++|+|++++|||+|||+
T Consensus        96 el~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~  175 (403)
T 3p4t_A           96 EMHYAGSPGGVYASLFTCGIAVPHMIASGDQRLIDTYVRPTLRGEKIGALAITEPGGGSDVGHLRTRADLDGDHYVINGA  175 (403)
T ss_dssp             HHHHTTCCHHHHHHHSTHHHHSHHHHHHTCHHHHHHTHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEE
T ss_pred             HHHHhCCchhhhHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccceEEEEEeCCEEEEEEE
Confidence            999999998 6666666656677899999999999999999999999999999999999999999999999999999999


Q ss_pred             eecccCCCCCCEEEEEEEeCC--CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHH
Q 020535          203 KRWIGNSTFADVLVIFARNTT--TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQD  279 (325)
Q Consensus       203 K~~it~~~~Ad~~~v~a~~~~--~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~  279 (325)
                      |.||||+..||+++|++++++  .+++++|+||++.|||++.+.|+++|+++++++++.|+||+||.+++||.. .|+..
T Consensus       176 K~~vs~a~~Ad~~~v~a~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~Vp~~~~lg~~~~g~~~  255 (403)
T 3p4t_A          176 KTYITSGVRADYVVTAARTGGPGAGGVSLIVVDKGTPGFEVTRKLDKMGWRSSDTAELSYTDVRVPVANLVGSENTGFAQ  255 (403)
T ss_dssp             EEEEETTTTCSEEEEEEECSSSSGGGEEEEEEETTCTTEEEEEECCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHH
T ss_pred             EEEecCCcccCEEEEEEEeCCCCCCceEEEEEeCCCCCeEecCCCCcccCCCCCeeEEEEcceEecHHHcCCCCCchHHH
Confidence            999999999999999999864  357999999999999999999999999999999999999999999999975 48999


Q ss_pred             HHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535          280 TSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       280 ~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~  325 (325)
                      ....++..|+  ++.++|     +++++++. ++|+++|+|||+||+++
T Consensus       256 ~~~~l~~~r~~~aa~~~G-----~a~~al~~a~~~a~~R~~fg~pi~~~  299 (403)
T 3p4t_A          256 IAAAFVAERVGLATQAYA-----GAQRCLDLTVEWCRNRDTFGRPLISR  299 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCEETTEEGGGS
T ss_pred             HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhCccCCCccccc
Confidence            9999999998  888899     99999999 99999999999999874

>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus}

Probab=100.00  E-value=1.8e-53  Score=403.08  Aligned_cols=273  Identities=33%  Similarity=0.605  Sum_probs=251.3

Q ss_pred             CcccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHH
Q 020535           47 DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEI  125 (325)
Q Consensus        47 d~~~~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~l  125 (325)
                      |.+.|++.++++++++++.+++|+++++.|...+.++.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|++
T Consensus         3 ~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel   82 (385)
T 2eba_A            3 DFYALEDLLTPEEKEVQKAARRFLEKEALPHIRDWWEEGVFPTHLIPRFAELGFLGPTLPPEYGGAGVSSAAYGLICYEL   82 (385)
T ss_dssp             CTTCGGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCGGGHHHHHHHTCSSTTSCGGGTCCCCCHHHHHHHHHHH
T ss_pred             cccccCCCCCHHHHHHHHHHHHHHHHhCCccHHHHHHhCCCCHHHHHHHHHCCCcCCCCchhhCCCCCCHHHHHHHHHHH
Confidence            445567778999999999999999999999988888889999999999999999999 9999999999999999999999


Q ss_pred             HccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCC-CCCceEEEEeCCEEEEEeEee
Q 020535          126 ARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDA-SALNTTATKVEGGWILEGQKR  204 (325)
Q Consensus       126 a~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~-~~~~~~a~~~~~g~~lnG~K~  204 (325)
                      ++.++++++.+.+|..++..+|..+|+++||++|+|++++|+.++|+++|||++|||+ ..++|+|++++|||+|||+|.
T Consensus        83 a~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~~t~A~~~~~g~~lnG~K~  162 (385)
T 2eba_A           83 ERVDSGLRSFVSVQSSLVMYPIYAYGSEEQKREFLPKLARGEMVGCFGLTEPDGGSDPYGNMKTRARREGDTWVLNGTKM  162 (385)
T ss_dssp             HHHCHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCCTTCTTSTTTTCCCEEEC--CEEEEEEEEE
T ss_pred             HHhCchHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCcCCCccccCeeEEEEeCCEEEEEeeee
Confidence            9999998877777766666788899999999999999999999999999999999999 999999999999999999999


Q ss_pred             cccCCCCCCEEEEEEEeCCCCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCCCChHHHHhhc
Q 020535          205 WIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVS  284 (325)
Q Consensus       205 ~it~~~~Ad~~~v~a~~~~~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~~g~~~~~~~l  284 (325)
                      |+||+..||+++|++++++. .+++|+||++.|||++.+.|+++|+++++++++.|+||+||.++++..++|++.....+
T Consensus       163 ~~s~~~~Ad~~~v~a~~~~g-~~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~l~~~~g~~~~~~~l  241 (385)
T 2eba_A          163 WITNGNLAHLAVIWAKDEGG-EVLGFLVPTDTPGFQAREVKRKMSLRASVTSELVLEEVRVPESLRLPKALGLKAPLSCL  241 (385)
T ss_dssp             EEETTTTCSEEEEEEECC----EEEEEEETTSTTEEEEECCSBSSSCSSCEEEEEEEEEEEEGGGBCTTCCSTHHHHHHH
T ss_pred             ccCCCcccCEEEEEEEeCCC-cEEEEEEeCCCCCeEecccccccccccCceeEEEEccEEEcHHHccCCCchHHHHHHHH
Confidence            99999999999999998632 38999999999999999999999999999999999999999999995456899888899


Q ss_pred             hhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535          285 EGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       285 ~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~  325 (325)
                      +..|+  ++.++|     +++++++. ++|+++|+|||+||+++
T Consensus       242 ~~~r~~~aa~~~G-----~a~~al~~a~~ya~~R~~fg~~i~~~  280 (385)
T 2eba_A          242 TQARFGIAWGAMG-----ALEAVYEEAVAFAKSRSTFGEPLAKK  280 (385)
T ss_dssp             HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCBSSSSBGGGS
T ss_pred             HHHHHHHHHHHHH-----HHHHHHHHHHHHHhhCeeCCeeHHhC
Confidence            99998  888899     99999999 99999999999999864

>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1

Probab=100.00  E-value=2.7e-53  Score=401.14  Aligned_cols=269  Identities=28%  Similarity=0.438  Sum_probs=251.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccC
Q 020535           51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVD  129 (325)
Q Consensus        51 ~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~  129 (325)
                      |++.++++++++++.+++|+++++.|.+.+.|+.+.+|.++|++|.+.||+++ +|++|||.|+++.+.+.++|++++.+
T Consensus         1 M~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~eel~~~~   80 (379)
T 1ukw_A            1 IDFSLTEEQRQLQALARRFAKEVILPVAQEYDEKEEVPWPVIEKLHEVGLLNAIIPEEYGGMGLKMLDEVIVGEELAYAC   80 (379)
T ss_dssp             CBCCCCHHHHHHHHHHHHHHHHTTGGGHHHHHHHTCCCHHHHHHHHHTTCTTTTSCGGGTSCCCCHHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhCchhHHHHhhcCCCCHHHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHHHHhC
Confidence            44568999999999999999999999988888889999999999999999999 99999999999999999999999999


Q ss_pred             CcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCC
Q 020535          130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS  209 (325)
Q Consensus       130 ~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~  209 (325)
                      +++++.+..| .++...|..+|+++||++|+|++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.||||+
T Consensus        81 ~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~  159 (379)
T 1ukw_A           81 MGIYTIPMAS-DLGITPVLLAGTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNG  159 (379)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHGGGTSSSCEEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred             chHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCcChhhCeEEEEEeCCEEEEEEEEecccCC
Confidence            9988766666 366778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEEEeCCC---CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhch
Q 020535          210 TFADVLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVSE  285 (325)
Q Consensus       210 ~~Ad~~~v~a~~~~~---~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~  285 (325)
                      ..||+++|+++++++   .++++|+||++.|||++.+.|+++|+++++++++.|+||+||.+++||.. .|+......++
T Consensus       160 ~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~~Gv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l~  239 (379)
T 1ukw_A          160 GEAEWVVVFATVNPELRHKGVVALVVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRLGEEGEGFKIAMQTLN  239 (379)
T ss_dssp             TTEEEEEEEEESCGGGGGGGEEEEEEETTCTTEEEEECCCCSSCTTSCEEEEEEEEEEEEGGGEESCTTCHHHHHHHHHH
T ss_pred             CcCCEEEEEEEcCCCCCCCceEEEEEeCCCCCeEecCccccccCCCCCeeEEEEeeEEecHHhcCCCCCchHHHHHHHHH
Confidence            999999999998632   47899999999999999999999999999999999999999999999875 48888889999


Q ss_pred             hhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535          286 GEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       286 ~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~  325 (325)
                      ..|+  ++.++|     +++++++. ++|+++|+|||+||+++
T Consensus       240 ~~r~~~aa~~~G-----~a~~al~~~~~ya~~R~~fg~~i~~~  277 (379)
T 1ukw_A          240 KTRIPVAAGSVG-----VARRALDEARKYAKEREAFGEPIANF  277 (379)
T ss_dssp             HHHHHHHHHHHH-----HHHHHHHHHHHHHHHCBSSSSBGGGS
T ss_pred             HHHHHHHHHHHH-----HHHHHHHHHHHHHHhCeeCCcchhhh
Confidence            9998  888899     99999999 99999999999999874

>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile}

Probab=100.00  E-value=6.4e-53  Score=399.60  Aligned_cols=268  Identities=26%  Similarity=0.380  Sum_probs=246.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCC
Q 020535           52 DDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDA  130 (325)
Q Consensus        52 ~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~  130 (325)
                      ++.++++++++++.+++|+++++.|.+.+.++.+.+|+++|++|++.||+++ +|++|||.|++..+.+.++|++++.++
T Consensus        13 ~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~   92 (387)
T 3nf4_A           13 RLLPSQEAAELIELTREIADKVLDPIVDRHEKDETYPEGVFEQLGAAGLLSLPQPEEWGGGGQPYEVYLQVLEEIAARWA   92 (387)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCTTHHHHHHTTTTTSTTSCGGGTCCCCCHHHHHHHHHHHHTTCH
T ss_pred             cccCCHHHHHHHHHHHHHHHHhCCccHHHHhhhCCCCHHHHHHHHHCCCCCCCCCHhhCCCCCCHHHHHHHHHHHHHhCc
Confidence            4458999999999999999999999999999999999999999999999999 999999999999999999999999999


Q ss_pred             cchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCC
Q 020535          131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST  210 (325)
Q Consensus       131 s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~  210 (325)
                      ++++.+..|. ++...|..+|+++||++|+|++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.|+||+.
T Consensus        93 ~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~  171 (387)
T 3nf4_A           93 SVAVAVSVHS-LSSHPLLVFGTEEQKKRWLPGMLSGEQIGAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWITHGG  171 (387)
T ss_dssp             HHHHHHHHHH-HHTHHHHHHSCHHHHHHHHHHHTTSSCCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTT
T ss_pred             hHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEEcCCCCCCChhhCEEEEEEeCCEEEEEeEEecccCCc
Confidence            9988777765 566788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEEeC-CCCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhchhhh
Q 020535          211 FADVLVIFARNT-TTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVSEGEE  288 (325)
Q Consensus       211 ~Ad~~~v~a~~~-~~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~~~r  288 (325)
                      .||+++|+++++ +.+++++|+||++.|||++.+.|+++|+++++++++.|+||+||.++++|.. .|+......++..|
T Consensus       172 ~Ad~~~v~a~~~~~~~g~~~flV~~~~pGv~~~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l~~~r  251 (387)
T 3nf4_A          172 KADFYTLFARTGEGSRGVSCFLVPADQPGLSFGKPEEKMGLHAVPTTSAFYDNARIDADRRIGEEGQGLQIAFSALDSGR  251 (387)
T ss_dssp             TCSEEEEEEECC--CCCEEEEEEETTCTTEEECCCCCBSSCCSSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHTHHHHH
T ss_pred             ccCEEEEEEEeCCCCCceEEEEEECCCCCeEecCcccccccCCCCeeEEEEeeEEecHHHcCCCCCchHHHHHHHHHHHH
Confidence            999999999986 3467999999999999999999999999999999999999999999999975 48999999999999


Q ss_pred             H--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535          289 T--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       289 ~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~  325 (325)
                      +  ++.++|     +++++++. ++|+++|+|||+||+++
T Consensus       252 ~~~aa~~~G-----~a~~al~~a~~~a~~R~~fg~~i~~~  286 (387)
T 3nf4_A          252 LGIAAVATG-----LAQAALDEAVAYANERTAFGRKIIDH  286 (387)
T ss_dssp             HHHHHHHHH-----HHHHHHHHHHHHHHC------CTTTC
T ss_pred             HHHHHHHHH-----HHHHHHHHHHHHHHhCeeCCCchhhh
Confidence            8  888899     99999999 99999999999999875

>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1

Probab=100.00  E-value=3.1e-53  Score=401.23  Aligned_cols=270  Identities=29%  Similarity=0.402  Sum_probs=252.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCC---ccHHHHHHHHHHHH
Q 020535           51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPG---HSVTGAAIAIAEIA  126 (325)
Q Consensus        51 ~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g---~s~~~~~~v~e~la  126 (325)
                      |++.++++++++++.+++|+++++.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|   +++.+.+.++|+++
T Consensus         1 M~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~~v~eel~   80 (383)
T 1buc_A            1 MDFNLTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSLGITGAYFEEKYGGSGDDGGDVLSYILAVEELA   80 (383)
T ss_dssp             CBCCCCHHHHHHHHHHHHHHHHTTTTTHHHHHHHTCCCHHHHHHHHTTSGGGTTSCGGGTCGGGGTCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhCchhHHHHhhcCCCCHHHHHHHHHCCCCCCCCChhhCCCCCCCCCHHHHHHHHHHHH
Confidence            44568999999999999999999999998889999999999999999999999 999999999   99999999999999


Q ss_pred             ccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEe-CCEEEEEeEeec
Q 020535          127 RVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV-EGGWILEGQKRW  205 (325)
Q Consensus       127 ~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~-~~g~~lnG~K~~  205 (325)
                      +.++++++.+.+|..++..+|..+|+++||++|+|++++|+.++|+++|||++|||+..++|+|+++ +|||+|||+|.|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~~g~~lnG~K~~  160 (383)
T 1buc_A           81 KYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIF  160 (383)
T ss_dssp             HHCHHHHHHHHHHHHHTHHHHHHHCCHHHHHHTHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEECTTSCEEEEEEEEE
T ss_pred             hhChHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEeCCCCCCCChhhCEeEEEEcCCCEEEEEEEEec
Confidence            9999988777777556678899999999999999999999999999999999999999999999999 999999999999


Q ss_pred             ccCCCCCCEEEEEEEeCC---CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHH
Q 020535          206 IGNSTFADVLVIFARNTT---TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTS  281 (325)
Q Consensus       206 it~~~~Ad~~~v~a~~~~---~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~  281 (325)
                      |||+..||+++|+|++++   +.++++|+||++.|||++.+.|+++|+++++++++.|+||+||.+++||.. .|+....
T Consensus       161 ~s~~~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~~Gv~v~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~lg~~g~g~~~~~  240 (383)
T 1buc_A          161 ITNGGAADIYIVFAMTDKSKGNHGITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEEGKGFKIAM  240 (383)
T ss_dssp             EETTTTCSEEEEEEESCSSSSTTSEEEEEEETTCTTEEEEEECCCSSCTTSCEEEEEEEEEEECGGGEESCTTBHHHHHH
T ss_pred             cCCCCcCCEEEEEEEeCCCCCCCceEEEEEECCCCCeEecCccccccccCCceeEEEEccEEeCHHHcCCCCCchHHHHH
Confidence            999999999999999863   246999999999999999999999999999999999999999999999974 4888888


Q ss_pred             hhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535          282 KVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       282 ~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~  325 (325)
                      ..++..|+  ++.++|     +++++++. ++|+++|+|||+||+++
T Consensus       241 ~~l~~~r~~~aa~~~G-----~a~~al~~~~~ya~~R~~fG~~i~~~  282 (383)
T 1buc_A          241 MTLDGGRIGVAAQALG-----IAEAALADAVEYSKQRVQFGKPLCKF  282 (383)
T ss_dssp             HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCEETTEEGGGS
T ss_pred             HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhCeeCCcchhhh
Confidence            89999998  888889     99999999 99999999999999874

>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A*

Probab=100.00  E-value=4e-53  Score=401.58  Aligned_cols=269  Identities=30%  Similarity=0.435  Sum_probs=249.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCC
Q 020535           52 DDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDA  130 (325)
Q Consensus        52 ~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~  130 (325)
                      ++.++++++++++.+++|+++++.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|++++.++
T Consensus         3 ~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~   82 (391)
T 2vig_A            3 SVELPETHQMLLQTCRDFAEKELFPIAAQVDKEHLFPAAQVKKMGGLGLLAMDVPEELGGAGLDYLAYAIAMEEISRGCA   82 (391)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCHHHHHHHHHHTTTSTTSCGGGTSCCCCHHHHHHHHHHHHHHCH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhCcccHHHHHhcCCCCHHHHHHHHHCCCCCCCCCHhhCCCCCCHHHHHHHHHHHHhhcc
Confidence            3458999999999999999999999998888999999999999999999999 999999999999999999999999999


Q ss_pred             cchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCC
Q 020535          131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST  210 (325)
Q Consensus       131 s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~  210 (325)
                      ++++.+.+|..++...|..+|+++||++|+|++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.||||+.
T Consensus        83 ~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~  162 (391)
T 2vig_A           83 STGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFALSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITNAW  162 (391)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHCCHHHHHHHTGGGSSSSCCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETTT
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCCcccceeEEEEeCCEEEEeeEEEeecCCC
Confidence            88877777654567788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEEeCC---CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhchh
Q 020535          211 FADVLVIFARNTT---TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVSEG  286 (325)
Q Consensus       211 ~Ad~~~v~a~~~~---~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~~  286 (325)
                      .||+++|+|++++   +.++++|+||++.|||++.+.|+++|+++++++++.|+||+||.+++||.. .|+......++.
T Consensus       163 ~Ad~~~v~a~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~r~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~~~l~~  242 (391)
T 2vig_A          163 EASAAVVFASTDRALQNKSISAFLVPMPTPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKDSILGEPGMGFKIAMQTLDM  242 (391)
T ss_dssp             TCSEEEEEEECCSSSTTSCEEEEEEESSCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTBHHHHHHHHHHH
T ss_pred             cCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecCccccccCCCCCeeEEEECcEEECHHHcCCCCCchHHHHHHHHHH
Confidence            9999999999863   236999999999999999999999999999999999999999999999975 488888889999


Q ss_pred             hhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535          287 EET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       287 ~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~  325 (325)
                      .|+  ++.++|     +++++++. ++|+++|+|||+||+++
T Consensus       243 ~r~~~aa~~~G-----~a~~al~~a~~ya~~R~~fg~~i~~~  279 (391)
T 2vig_A          243 GRIGIASQALG-----IAQTALDCAVNYAENRMAFGAPLTKL  279 (391)
T ss_dssp             HHHHHHHHHHH-----HHHHHHHHHHHHHHHCEETTEEGGGS
T ss_pred             HHHHHHHHHHH-----HHHHHHHHHHHHHHhCccCCCcchhh
Confidence            998  888889     99999999 99999999999999874

>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile}

Probab=100.00  E-value=1.9e-53  Score=403.98  Aligned_cols=269  Identities=29%  Similarity=0.401  Sum_probs=246.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccC
Q 020535           51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVD  129 (325)
Q Consensus        51 ~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~  129 (325)
                      |++.++++++++++.+++|+++++.|.+.+.++.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|++++.+
T Consensus        15 m~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~~~~~~P~~~GG~g~~~~~~~~v~eela~~~   94 (393)
T 3pfd_A           15 ELFQLPEEHIALREAIRALAEKEIAPYAAEVDEKARFPEEALAALNSSGFSAIHVPEEYGGQGADSVATCIVIEEVARVD   94 (393)
T ss_dssp             -------CHHHHHHHHHHHHHHHTGGGHHHHHHTTCCCHHHHHHHHHHTCSCTTSCGGGTCCCCCHHHHHHHHHHHHTTC
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHhCchHHHHHhhhCCCCHHHHHHHHHCCCCCCCCChhHCCCCCCHHHHHHHHHHHHhhC
Confidence            55668999999999999999999999999999999999999999999999999 99999999999999999999999999


Q ss_pred             CcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCC
Q 020535          130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS  209 (325)
Q Consensus       130 ~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~  209 (325)
                      +++++++..|. ++...|..+|+++||++|||++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.|+||+
T Consensus        95 ~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~  173 (393)
T 3pfd_A           95 CSASLIPAVNK-LGTMGLILRGSEELKKQVLPAVASGEAMASYALSEREAGSDAASMRTRAVADGDDWILNGSKCWITNG  173 (393)
T ss_dssp             HHHHHHHHHHH-HTTHHHHHHCCHHHHHHHHHHHHTTSCCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred             chHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEEcCCCCCCCcccCeeEEEEcCCEEEEeeEEEEecCC
Confidence            99887665553 55567889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEEEeCCC---CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhch
Q 020535          210 TFADVLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVSE  285 (325)
Q Consensus       210 ~~Ad~~~v~a~~~~~---~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~  285 (325)
                      ..||+++|+++++++   +++++|+||++.|||++.+.|+++|+++++++++.|+||+||.+++||.. .|+......++
T Consensus       174 ~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~Vp~~~~lg~~g~g~~~~~~~l~  253 (393)
T 3pfd_A          174 GKSTWYTVMAVTDPDKGANGISAFMVHKDDEGFTVGPKERKLGIKGSPTTELYFENCRIPGDRIIGEPGTGFKTALATLD  253 (393)
T ss_dssp             TTCSEEEEEEESCGGGGGGGEEEEEEETTSTTEEEEEECCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHH
T ss_pred             cccCEEEEEEEeCCCCCCCceEEEEEECCCCCeEecCCCCcccCCCCCceEEEEccEEEcHHHcCCCCCchHHHHHHHHH
Confidence            999999999998642   57999999999999999999999999999999999999999999999985 48999999999


Q ss_pred             hhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535          286 GEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       286 ~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~  325 (325)
                      ..|+  ++.++|     +++++++. ++|+++|+|||+||+++
T Consensus       254 ~~r~~~aa~~~G-----~a~~al~~a~~~a~~R~~fg~~i~~~  291 (393)
T 3pfd_A          254 HTRPTIGAQAVG-----IAQGALDAAIAYTKERKQFGRPVSDN  291 (393)
T ss_dssp             TTHHHHHHHHHH-----HHHHHHHHHHHHHHHCEETTEEGGGS
T ss_pred             HHHHHHHHHHHH-----HHHHHHHHHHHHHhcCccCCcchhhh
Confidence            9998  888899     99999999 99999999999999874

>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens}

Probab=100.00  E-value=5.5e-53  Score=402.17  Aligned_cols=268  Identities=28%  Similarity=0.419  Sum_probs=249.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCC
Q 020535           52 DDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDA  130 (325)
Q Consensus        52 ~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~  130 (325)
                      ++.+++|++++++.+++|+++++.|...+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|++++.++
T Consensus        26 ~~~~~~e~~~l~~~~r~~~~~~~~p~~~~~d~~~~~~~~~~~~l~e~Gl~~l~~P~e~GG~g~~~~~~~~v~eel~~~~~  105 (404)
T 2jif_A           26 LQTFTDEEMMIKSSVKKFAQEQIAPLVSTMDENSKMEKSVIQGLFQQGLMGIEVDPEYGGTGASFLSTVLVIEELAKVDA  105 (404)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHTGGGHHHHHHHTCCCHHHHHHHHHTTTTSSSSCGGGTCCCCCHHHHHHHHHHHHTTCH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHhCcccHHHHhhcCCCCHHHHHHHHHCCCCccCCchhhCCCCCCHHHHHHHHHHHHhcCc
Confidence            3447899999999999999999999988888889999999999999999999 999999999999999999999999999


Q ss_pred             cchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCC
Q 020535          131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST  210 (325)
Q Consensus       131 s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~  210 (325)
                      ++++.+.+|..++..+|..+|+++||++|||++.+|+ ++|+++|||++|||+..++|+|++++|||+|||+|.||||+.
T Consensus       106 ~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~g~-~~~~a~tEp~~Gsd~~~~~t~A~~~g~g~vlnG~K~~is~a~  184 (404)
T 2jif_A          106 SVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTTEK-VGSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAE  184 (404)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHHTC-CEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETTT
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCC-cceEEecCCCCCCChhhceeEEEEeCCEEEEEeEEEeecCCc
Confidence            9888777776666778899999999999999999986 789999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEEeCCC---CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhchh
Q 020535          211 FADVLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVSEG  286 (325)
Q Consensus       211 ~Ad~~~v~a~~~~~---~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~~  286 (325)
                      .||+++|+++++++   .++++|+||++.|||++.+.|+++|+++++++++.|+||+||.+++||.. .|++.....++.
T Consensus       185 ~Ad~~~v~ar~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~~~l~~  264 (404)
T 2jif_A          185 HAGLFLVMANVDPTIGYKGITSFLVDRDTPGLHIGKPENKLGLRASSTCPLTFENVKVPEANILGQIGHGYKYAIGSLNE  264 (404)
T ss_dssp             TCSEEEEEEESCGGGGGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHH
T ss_pred             ccCEEEEEEEeCCCCCCCceEEEEEecCCCCeEeccCcccccCCCCceEEEEEccEEECHHHcCCCCCchHHHHHHHHHH
Confidence            99999999998532   46899999999999999999999999999999999999999999999875 488888899999


Q ss_pred             hhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535          287 EET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       287 ~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~  325 (325)
                      +|+  ++.++|     +++++++. ++|+++|+|||+||+++
T Consensus       265 ~r~~~aa~~~G-----~a~~al~~a~~ya~~R~~fG~~i~~~  301 (404)
T 2jif_A          265 GRIGIAAQMLG-----LAQGCFDYTIPYIKERIQFGKRLFDF  301 (404)
T ss_dssp             HHHHHHHHHHH-----HHHHHHHHHHHHHHHCEETTEEGGGS
T ss_pred             HHHHHHHHHHH-----HHHHHHHHHHHHHHhCcccCCccccc
Confidence            998  888889     99999999 99999999999999874

>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus}

Probab=100.00  E-value=3.6e-53  Score=403.37  Aligned_cols=271  Identities=21%  Similarity=0.298  Sum_probs=252.1

Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHcc
Q 020535           50 QFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARV  128 (325)
Q Consensus        50 ~~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~  128 (325)
                      .++..++++++++++.+++|+++++.|.+.+.++.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|++++.
T Consensus        24 ~~~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~  103 (403)
T 3r7k_A           24 APEAWTTPERRALSQMARSFVEREIAPKLAEWEHVGEIPRDLHLNAAEVGLLGIGFPEEVGGSGGNAIDSALVTEAILAA  103 (403)
T ss_dssp             -CGGGGCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTSCCTHHHHHHHHHTCTTBTSCGGGTCCBCCHHHHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHhcCCCCHHHHHHHHhCCCCcCCCChhhCCCCCCHHHHHHHHHHHHhc
Confidence            345558999999999999999999999999999999999999999999999999 9999999999999999999999998


Q ss_pred             -CCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeeccc
Q 020535          129 -DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIG  207 (325)
Q Consensus       129 -~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it  207 (325)
                       ++++++.+.++..++...|..+|+++||++|+|++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.|||
T Consensus       104 ~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~vs  183 (403)
T 3r7k_A          104 GGSTGVCAALFTHGIALPHIAANGSDALIERYVRPTLAGKMIGSLGVTEPGAGSDVANLRTRAVREGDTYVVNGAKTFIT  183 (403)
T ss_dssp             TCCHHHHHHHCTHHHHSHHHHHHCCHHHHHHHHHHHHTTSCCEEEECCBTTBSSCGGGCCCEEEECSSEEEEEEEEEEEE
T ss_pred             CCchHHHHHHHHhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhceEEEEEECCEEEEEEEEEccc
Confidence             8877666654555677889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCEEEEEEEeCC--CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhc
Q 020535          208 NSTFADVLVIFARNTT--TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVS  284 (325)
Q Consensus       208 ~~~~Ad~~~v~a~~~~--~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l  284 (325)
                      |+..||+++|++++++  .+++++|+||+++|||++.+.|+++|+++++++++.|+||+||.+++||.. .|+......+
T Consensus       184 ~a~~Ad~~~v~a~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l  263 (403)
T 3r7k_A          184 SGVRADFVTTAVRTGGPGYGGVSLLVIDKNSPGFEVSRRLDKMGWRCSDTAELSFVDVRVPADNLVGAENSGFLQIMQQF  263 (403)
T ss_dssp             TTTTCSEEEEEEECSSSSGGGEEEEEEETTCTTEEEEEECCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHTH
T ss_pred             CCccCCEEEEEEEcCCCCCCceEEEEEeCCCCCeEecCcccccCCCCCCceEEEEeeEEECHHHcCCCCCchHHHHHHHH
Confidence            9999999999999864  347999999999999999999999999999999999999999999999975 5899999999


Q ss_pred             hhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535          285 EGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       285 ~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~  325 (325)
                      +..|+  ++.++|     +++++++. ++|+++|+|||+||+++
T Consensus       264 ~~~r~~~aa~~~G-----~a~~al~~a~~ya~~R~~fg~~i~~~  302 (403)
T 3r7k_A          264 QAERLGIAVQAYA-----TAGRALDLAKSWARERETFGRPLTGR  302 (403)
T ss_dssp             HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCEETTEEGGGS
T ss_pred             HHHHHHHHHHHHH-----HHHHHHHHHHHHHHcCccCCCchhhc
Confidence            99998  888899     99999999 99999999999999874

>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus}

Probab=100.00  E-value=6.1e-53  Score=397.77  Aligned_cols=264  Identities=31%  Similarity=0.475  Sum_probs=249.0

Q ss_pred             CCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcch
Q 020535           55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCS  133 (325)
Q Consensus        55 l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~~  133 (325)
                      +++|++++++.+++|+++++.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|++++.+++++
T Consensus         3 ~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~   82 (372)
T 2dvl_A            3 LTQEQRLVLDAVRRVAREVLYPLAPEYDRKAEYPWPQLKALAELGLLGMTTPEEWGGVGLDSVTWALALEELAAADPSVA   82 (372)
T ss_dssp             CCHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCCHHHHHHHHHTTGGGTTSCGGGTSCCCCHHHHHHHHHHHHHHCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhCchhHHHHHhhCCCCHHHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHHHHhcCcHHH
Confidence            6899999999999999999999888888889999999999999999999 999999999999999999999999999988


Q ss_pred             hHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCCCCC
Q 020535          134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFAD  213 (325)
Q Consensus       134 ~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~~Ad  213 (325)
                      +.+.+|..++...|..+|+++||++|+|++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.||||+..||
T Consensus        83 ~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad  162 (372)
T 2dvl_A           83 VIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEWIGAFCLTEPQAGSDAKSLRAEARRVKGGFVLNGVKSWITSAGHAH  162 (372)
T ss_dssp             HHHHHHTSHHHHHHHHHCCHHHHHHTHHHHHTTSSCEEEECCCSSCSSCGGGCCCEEEEETTEEEEEEEEEEEETTTTCS
T ss_pred             HHHHHhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeeEEEEECCEEEEEeEEEeecCCCcCC
Confidence            77777754667788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEeCCCCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhchhhhH--H
Q 020535          214 VLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVSEGEET--V  290 (325)
Q Consensus       214 ~~~v~a~~~~~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~~~r~--a  290 (325)
                      +++|++++++  ++++|+||++.|||++.+.|+++|+++++++++.|+||+||.++++|.. .|+......++..|+  +
T Consensus       163 ~~~v~a~~~~--g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~a  240 (372)
T 2dvl_A          163 LYVVMARTEK--GISAFLVEKGTPGLSFGRPEEKMGLHAAHTAEVRLEEVFVPEENLLGEEGRGLAYALAGLDSGRVGVA  240 (372)
T ss_dssp             EEEEEEEETT--EEEEEEEETTCTTEEECCCCCCSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEeCC--CcEEEEEeCCCCCeEecCcccccccCcCCeeEEEECcEEeCHHHcCCCCCchHHHHHHHHHHHHHHHH
Confidence            9999999874  7999999999999999999999999999999999999999999999874 488888889999998  8


Q ss_pred             HhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535          291 WSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       291 a~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~  325 (325)
                      +.++|     +++++++. ++|+++|+|||+||+++
T Consensus       241 a~~~G-----~a~~al~~a~~ya~~R~~fg~~i~~~  271 (372)
T 2dvl_A          241 AQAVG-----IARGAFEIAKAYAEEREQFGKKLKEH  271 (372)
T ss_dssp             HHHHH-----HHHHHHHHHHHHHHHCEETTEEGGGS
T ss_pred             HHHHH-----HHHHHHHHHHHHHhhCcccCCchhhh
Confidence            88889     99999999 99999999999999874

>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A*

Probab=100.00  E-value=6.4e-53  Score=400.78  Aligned_cols=270  Identities=26%  Similarity=0.401  Sum_probs=251.6

Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHcc
Q 020535           50 QFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARV  128 (325)
Q Consensus        50 ~~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~  128 (325)
                      .|++.++++++++++.+++|+++++.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|++++.
T Consensus        11 ~m~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~   90 (396)
T 1egd_A           11 GFSFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCGGLGLGTFDACLISEELAYG   90 (396)
T ss_dssp             EEECCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHCCCCHHHHHHHHHHTCSSTTSCGGGTSCCCCHHHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHHhCchhHHHHHhhCCCCHHHHHHHHHCCCCCCCCchhhCCCCCCHHHHHHHHHHHHhh
Confidence            466678999999999999999999999988888899999999999999999999 9999999999999999999999999


Q ss_pred             CCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccC
Q 020535          129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGN  208 (325)
Q Consensus       129 ~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~  208 (325)
                      ++++++.+ .|..++..+|..+|+++||++|||++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.||||
T Consensus        91 ~~~~~~~~-~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~  169 (396)
T 1egd_A           91 CTGVQTAI-EGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITN  169 (396)
T ss_dssp             CHHHHHHH-HHHHHHTHHHHHHCCHHHHHHHHHHHHHSCCCEEEECCBTTBSSSGGGCCCEEEECSSEEEEEEEEEEEET
T ss_pred             CccHHHHH-HhhhHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCcchhhCeeEEEEeCCEEEEEEEEEcccC
Confidence            99988766 66656666788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEEeCCC------CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHH
Q 020535          209 STFADVLVIFARNTTT------NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTS  281 (325)
Q Consensus       209 ~~~Ad~~~v~a~~~~~------~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~  281 (325)
                      +..||+++|+++++++      .++++|+||++.|||++.+.|+++|+++++++++.|+||+||.+++||.. .|+....
T Consensus       170 ~~~Ad~~~v~a~~~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~  249 (396)
T 1egd_A          170 GGKANWYFLLARSDPDPKAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAM  249 (396)
T ss_dssp             TTTCSEEEEEEECCCCTTSCGGGTEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGBSSSTTBHHHHHH
T ss_pred             CcccCEEEEEEEeCCCCCCCCCCCeEEEEEeCCCCCeeeCCccccccccCCCeeEEEECcEEECHHHcCCCCCccHHHHH
Confidence            9999999999998642      46899999999999999999999999999999999999999999999875 4888888


Q ss_pred             hhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535          282 KVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       282 ~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~  325 (325)
                      ..++..|+  ++.++|     +++++++. ++|+++|+|||+||+++
T Consensus       250 ~~l~~~r~~~aa~~~G-----~a~~al~~a~~ya~~R~~fG~~i~~~  291 (396)
T 1egd_A          250 GAFDKERPVVAAGAVG-----LAQRALDEATKYALERKTFGKLLVEH  291 (396)
T ss_dssp             HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHTTCEETTEEGGGS
T ss_pred             HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhcCccCCcchhhh
Confidence            99999998  888889     99999999 99999999999999874

>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus}

Probab=100.00  E-value=2.1e-52  Score=395.80  Aligned_cols=266  Identities=24%  Similarity=0.339  Sum_probs=247.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccC-C
Q 020535           53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVD-A  130 (325)
Q Consensus        53 ~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~-~  130 (325)
                      +.++++++++++.+++|+++++.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|++++.+ +
T Consensus         8 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~~~~~   87 (385)
T 2pg0_A            8 RYLREEHHMFRAAFRKFLEKEAYPHYNDWEKRGIIPRSFWAKMGENGFLCPWVDEKYGGLNADFAYSVVINEELEKVGSS   87 (385)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTSCCHHHHHHHHHTTCSSTTSCGGGTCCCCCHHHHHHHHHHHHHHCGG
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCchhHHHHHhcCCCCHHHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHHHhhCCc
Confidence            458899999999999999999999988888999999999999999999999 99999999999999999999999999 7


Q ss_pred             cchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCC
Q 020535          131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST  210 (325)
Q Consensus       131 s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~  210 (325)
                      ++++.+  |..++..+|..+|+++||++|+|++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.||||+.
T Consensus        88 ~~~~~~--~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~  165 (385)
T 2pg0_A           88 LVGIGL--HNDIVTPYIASYGTEEQKQKWLPKCVTGELITAIAMTEPGAGSDLANISTTAVKDGDYYIVNGQKTFITNGI  165 (385)
T ss_dssp             GHHHHH--HHHTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEETTTT
T ss_pred             hHHHHH--HhhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCcCHhhCeEEEEEcCCEEEEEeEEecccCCc
Confidence            877544  554567788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEEeCCC-----CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhc
Q 020535          211 FADVLVIFARNTTT-----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVS  284 (325)
Q Consensus       211 ~Ad~~~v~a~~~~~-----~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l  284 (325)
                      .||+++|+++++++     .++++|+||++.|||++.+.|+++|+++++++++.|+||+||.+++||.. .|+......+
T Consensus       166 ~Ad~~~v~a~~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~~~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~~~l  245 (385)
T 2pg0_A          166 HADLIVVACKTDPQAKPPHRGISLLVVERDTPGFTRGRKLEKVGLHAQDTAELFFQDAKVPAYNLLGEEGKGFYYLMEKL  245 (385)
T ss_dssp             TCSEEEEEEESCTTCSSGGGGEEEEEEETTCTTEEECCCCCBSSCTTSCCEEEEEEEEEEEGGGEESCTTCHHHHHHHHH
T ss_pred             ccCEEEEEEEeCCccCCCCCceEEEEEeCCCCCeEecCCccccccCCCceEEEEEcceEEcHHHcCCCCCchHHHHHHHH
Confidence            99999999998633     26899999999999999999999999999999999999999999999974 5888888899


Q ss_pred             hhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535          285 EGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       285 ~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~  325 (325)
                      +..|+  ++.++|     +++++++. ++|+++|+|||+||+++
T Consensus       246 ~~~r~~~aa~~~G-----~a~~al~~a~~ya~~R~~fg~~i~~~  284 (385)
T 2pg0_A          246 QQERLVVAIAAQT-----AAEVMFSLTKQYVKQRTAFGKRVSEF  284 (385)
T ss_dssp             HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCEETTEEGGGS
T ss_pred             HHHHHHHHHHHHH-----HHHHHHHHHHHHHhcCccCCCccchh
Confidence            99998  888889     99999999 99999999999999874

>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1

Probab=100.00  E-value=2.7e-52  Score=396.08  Aligned_cols=268  Identities=26%  Similarity=0.378  Sum_probs=249.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCC
Q 020535           52 DDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDA  130 (325)
Q Consensus        52 ~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~  130 (325)
                      ++.++++++++++.+++|+++++.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|++..+.+.++|++++.++
T Consensus        16 ~~~~~~e~~~~~~~~r~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~~   95 (393)
T 1rx0_A           16 SMGLNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYIQTDVGGSGLSRLDTSVIFEALATGCT   95 (393)
T ss_dssp             TTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCHHHHHHHHHTTCSSTTSCGGGTCCCCCHHHHHHHHHHHHTTCH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhCCccHHHHhhcCCCCHHHHHHHHhCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHhCc
Confidence            3458999999999999999999999988888889999999999999999999 999999999999999999999999999


Q ss_pred             cchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCC
Q 020535          131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST  210 (325)
Q Consensus       131 s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~  210 (325)
                      ++++++..|. ++..+|..+|+++||++|+|++++|+.++|+++|||++|||+..+.|+|++++|||+|||+|.||||+.
T Consensus        96 ~~~~~~~~~~-~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~is~a~  174 (393)
T 1rx0_A           96 STTAYISIHN-MCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAG  174 (393)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETTT
T ss_pred             chhHHHHHhH-HHHHHHHHHCCHHHHHHHHHHHhCCCceEEEEecCCCCCcCcccceeEEEEcCCEEEEEeEEEeecCCc
Confidence            8887776664 566788899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEEeCC--CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhchhh
Q 020535          211 FADVLVIFARNTT--TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVSEGE  287 (325)
Q Consensus       211 ~Ad~~~v~a~~~~--~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~~~  287 (325)
                      .||+++|++++++  +.++++|+||++.|||++.+.++++|+++++++++.|+||+||.+++||.. .|+......++..
T Consensus       175 ~Ad~~~v~a~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~~~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~~~l~~~  254 (393)
T 1rx0_A          175 ESDIYVVMCRTGGPGPKGISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGSEGQGFLIAVRGLNGG  254 (393)
T ss_dssp             TCSEEEEEEESSSSSGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHHH
T ss_pred             cCCEEEEEEEcCCCCCCceEEEEEeCCCCCeEecCcccccccCCCCceEEEEcCeEeCHHHcCCCCCchHHHHHHHHHHH
Confidence            9999999999854  246999999999999999999999999999999999999999999999874 4888888889989


Q ss_pred             hH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535          288 ET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       288 r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~  325 (325)
                      |+  ++.++|     +++++++. ++|+++|+|||+||+++
T Consensus       255 r~~~aa~~~G-----~a~~al~~a~~ya~~R~~fG~~i~~~  290 (393)
T 1rx0_A          255 RINIASCSLG-----AAHASVILTRDHLNVRKQFGEPLASN  290 (393)
T ss_dssp             HHHHHHHHHH-----HHHHHHHHHHHHHHHCEETTEEGGGC
T ss_pred             HHHHHHHHHH-----HHHHHHHHHHHHHHhCccCCCchhhh
Confidence            98  888899     99999999 99999999999999874

>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1

Probab=100.00  E-value=1.5e-52  Score=398.07  Aligned_cols=267  Identities=25%  Similarity=0.364  Sum_probs=250.7

Q ss_pred             CCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCh--hHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCC
Q 020535           54 LLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPF--HVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDA  130 (325)
Q Consensus        54 ~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~--~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~  130 (325)
                      .++++++++++.+++|+++++.|.+.+.++.+.+|.  ++|++|++.||+++ +|++|||.|+++.+.+.++|++++.++
T Consensus        12 ~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eel~~~~~   91 (394)
T 1ivh_A           12 GLSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASG   91 (394)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCTTHHHHHHHHHHHTCTTTTSCGGGTCCCCCHHHHHHHHHHHHHHCH
T ss_pred             CCCHHHHHHHHHHHHHHHHhCChhHHHHHhcCCCCchHHHHHHHHHCCCCCCCCCcccCCCCCCHHHHHHHHHHHHhhch
Confidence            478999999999999999999998888889999999  99999999999999 999999999999999999999999999


Q ss_pred             cchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCC
Q 020535          131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST  210 (325)
Q Consensus       131 s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~  210 (325)
                      ++++.+.+|..++..+|..+|+++||++|+|++++|+.++|+++|||++|||+..+.|+|++++|||+|||+|.||||+.
T Consensus        92 ~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~vs~~~  171 (394)
T 1ivh_A           92 AVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGP  171 (394)
T ss_dssp             HHHHHHHHHHTTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECSSEEEEEEEEEEEETGG
T ss_pred             hHHHHHHHhhHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCcCcccceEEEEEcCCEEEEEeEEEeeCCCC
Confidence            98887777765667889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEEeCCC-----CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhc
Q 020535          211 FADVLVIFARNTTT-----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVS  284 (325)
Q Consensus       211 ~Ad~~~v~a~~~~~-----~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l  284 (325)
                      .||+++|+++++++     .++++|+||++.|||++.+.|+++|+++++++++.|+||+||.+++||.. .|+......+
T Consensus       172 ~Ad~~~v~ar~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l  251 (394)
T 1ivh_A          172 DADVLIVYAKTDLAAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHENKGVYVLMSGL  251 (394)
T ss_dssp             GCSEEEEEEESCTTCSSGGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESCTTCHHHHHHHHH
T ss_pred             cCCEEEEEEEeCCcccCCCCCeEEEEEeCCCCCeEeccccccccCCCCCeeEEEECcEEEcHHHcCCCCCchHHHHHHHH
Confidence            99999999998643     36899999999999999999999999999999999999999999999974 4888888999


Q ss_pred             hhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535          285 EGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       285 ~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~  325 (325)
                      +..|+  ++.++|     +++++++. ++|+++|+|||+||+++
T Consensus       252 ~~~r~~~aa~~~G-----~a~~al~~a~~ya~~R~~fg~~i~~~  290 (394)
T 1ivh_A          252 DLERLVLAGGPLG-----LMQAVLDHTIPYLHVREAFGQKIGHF  290 (394)
T ss_dssp             HHHHHHHTHHHHH-----HHHHHHHHHHHHHTTCEETTEEGGGS
T ss_pred             HHHHHHHHHHHHH-----HHHHHHHHHHHHHHhCeeCCcchhcc
Confidence            99998  888889     99999999 99999999999999874

>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=3.4e-52  Score=412.86  Aligned_cols=282  Identities=25%  Similarity=0.383  Sum_probs=253.8

Q ss_pred             hhhhcccCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHh-CCCChhHHHH
Q 020535           16 ARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEK-AEFPFHVIPK   94 (325)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~-~~~p~~~~~~   94 (325)
                      ++++|+|+ .++.++++|             +       +++|++++++.+++|+++++.|...+.+.. ..+|+++|++
T Consensus        10 ~~~~f~~~-~~~~~~~~~-------------~-------~~~e~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~   68 (577)
T 2z1q_A           10 KGGGWLLE-VPERVYTPE-------------D-------FDESVKEIARTTRTFVEREVLPLLERMEHGELELNVPLMRK   68 (577)
T ss_dssp             STTGGGTS-CCSCCCCGG-------------G-------CCHHHHHHHHHHHHHHHTTTHHHHHHHHTTCGGGHHHHHHH
T ss_pred             ccCccccC-CHHHcCCCC-------------C-------CCHHHHHHHHHHHHHHhccCchhHHhhhcccCCCCHHHHHH
Confidence            47899998 666554311             1       578999999999999999888885444322 3789999999


Q ss_pred             HHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEE
Q 020535           95 LGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA  173 (325)
Q Consensus        95 l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a  173 (325)
                      |++.||+++ +|++|||.|++..+.+.++|++ +.++++++.+..|..++..+|..+|+++||++|||++++|++++|++
T Consensus        69 l~e~Gl~~l~vPee~GG~g~~~~~~~~v~eel-~~~~s~~~~~~~~~~~~~~~l~~~Gt~eQk~~~Lp~l~~G~~~~a~a  147 (577)
T 2z1q_A           69 AGELGLLAIDVPEEYGGLDLPKVISTVVAEEL-SGSGGFSVTYGAHTSIGTLPLVYFGTEEQKRKYLPKLASGEWIAAYC  147 (577)
T ss_dssp             HHHTTTTSTTSCGGGTCCCCCHHHHHHHHHHH-TTSCTHHHHHHHHHTTTTHHHHHHCCHHHHHTTHHHHHHTSSCEEEE
T ss_pred             HHHCCCCCcCCChhhCCCCCCHHHHHHHHHHH-hhcccHHHHHhhhHHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEE
Confidence            999999999 9999999999999999999999 77888888777776666668899999999999999999999999999


Q ss_pred             ecCCCCCCCCCCCceEEEEe--CCEEEEEeEeecccCCCCCCEEEEEEEeCCCCCeEEEEEeCCCCCeEEeccCCccCcc
Q 020535          174 LTEPAYGSDASALNTTATKV--EGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLR  251 (325)
Q Consensus       174 ~tEp~~Gsd~~~~~~~a~~~--~~g~~lnG~K~~it~~~~Ad~~~v~a~~~~~~~~~~~lv~~~~~Gv~~~~~~~~~G~~  251 (325)
                      +|||++|||+..++|+|+++  +++|+|||+|.||||++.||+++|+|++++ +++++|+||++.|||++.+.|+++|++
T Consensus       148 lTEp~aGSD~~~~~t~A~~~~dG~~~vLnG~K~~it~a~~Ad~~~V~Ar~~g-~gis~flVp~~~pGv~v~~~~~~~G~~  226 (577)
T 2z1q_A          148 LTEPGSGSDALAAKTRATLSEDGKHYILNGVKQWISNAGFAHLFTVFAKVDG-EHFTAFLVERDTPGLSFGPEEKKMGIK  226 (577)
T ss_dssp             CCBTTBSSSGGGCCCEEEECTTSSEEEEEEEEEEEETTTTCSEEEEEEEETT-TEEEEEEEETTCTTEEECCCCCBSSCT
T ss_pred             ecCCCCCCCcccCeeEEEEeCCCCEEEEEEEeeCCCCCCccCEEEEEEEeCC-CeeEEEEEeCCCCCeEecCCCCCCCCC
Confidence            99999999999999999995  457999999999999999999999999974 679999999999999999999999999


Q ss_pred             ccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535          252 IVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       252 ~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~  325 (325)
                      +++++++.|+||+||.+++||.. .|++.....++.+|+  ++.++|     +++++++. ++|+++|+|||+||+++
T Consensus       227 ~~~~~~v~fddv~VP~~~llg~~g~g~~~~~~~l~~~R~~~aa~~~G-----~a~~al~~a~~ya~~R~qfg~pi~~~  299 (577)
T 2z1q_A          227 ASSTRQVILEDVKVPVENVLGEIGKGHKIAFNVLNVGRYKLGAGAVG-----GAKRALELSAQYATQRVQFGRPIGRF  299 (577)
T ss_dssp             TSCEEEEEEEEEEEEGGGEESCTTCTHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCBCSSSBGGGS
T ss_pred             CCceeEEEecceeccHHHccCCCCchHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhCccCCCchhhh
Confidence            99999999999999999999974 599999999999998  888889     99999999 99999999999999874

>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A*

Probab=100.00  E-value=5.9e-52  Score=393.62  Aligned_cols=272  Identities=33%  Similarity=0.555  Sum_probs=252.2

Q ss_pred             CcccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHH
Q 020535           47 DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEI  125 (325)
Q Consensus        47 d~~~~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~l  125 (325)
                      |.+.|++.+++|++++++.+++|+++++.|...+.++.+.+|+++|++|++.||+++ + ++|||.|+++.+.+.++|++
T Consensus         6 ~~~~m~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~-~~~GG~g~~~~~~~~~~eel   84 (392)
T 1siq_A            6 DPLVLEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTI-KGYGCAGVSSVAYGLLAREL   84 (392)
T ss_dssp             STTCGGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCTHHHHHHHHTTCSSTTC-EETTEECCCHHHHHHHHHHH
T ss_pred             cccccCCCCCHHHHHHHHHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHhCCCCcccH-HhhCCCCCCHHHHHHHHHHH
Confidence            445577779999999999999999999999888888889999999999999999999 9 99999999999999999999


Q ss_pred             HccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEe--CCEEEEEeEe
Q 020535          126 ARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILEGQK  203 (325)
Q Consensus       126 a~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~--~~g~~lnG~K  203 (325)
                      ++.++++++.+.++..++...|..+|+++||++|+|++++|+.++|+++|||++|||+..++|+|+++  +|||+|||+|
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~~~g~~lnG~K  164 (392)
T 1siq_A           85 ERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTK  164 (392)
T ss_dssp             HTTCHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEEEEE
T ss_pred             HHhCcHHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEECCCCCCcCccccEEEEEEeCCCCEEEEEEEE
Confidence            99999887666566555567788999999999999999999999999999999999999999999999  9999999999


Q ss_pred             ecccCCCCCCEEEEEEEeCCCCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCCCChHHHHhh
Q 020535          204 RWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKV  283 (325)
Q Consensus       204 ~~it~~~~Ad~~~v~a~~~~~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~~g~~~~~~~  283 (325)
                      .||||+..||+++|++++++ +++++|+||++.|||++.+.|+++|+++++++++.|+||+||.+++++..+|+......
T Consensus       165 ~~vs~~~~Ad~~~v~a~~~~-g~~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~g~~~~~~~  243 (392)
T 1siq_A          165 TWITNSPMADLFVVWARCED-GCIRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSLGGPFGC  243 (392)
T ss_dssp             EEEETGGGCSEEEEEEEETT-SCEEEEEEETTCTTEECCBCCCCSSSTTSCEEEEEEEEEEEEGGGBCTTCCSSHHHHHH
T ss_pred             EeecCCcccCEEEEEEEECC-CCEEEEEEeCCCCCeEeccccccccccCCceEEEEEccEEECHHHcCCcccCHHHHHHH
Confidence            99999999999999999864 35899999999999999999999999999999999999999999999887788888888


Q ss_pred             chhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535          284 SEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       284 l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~  325 (325)
                      ++..|+  ++.++|     +++++++. ++|+++|+|||+||+++
T Consensus       244 l~~~r~~~aa~~~G-----~a~~al~~a~~ya~~R~~fG~~i~~~  283 (392)
T 1siq_A          244 LNNARYGIAWGVLG-----ASEFCLHTARQYALDRMQFGVPLARN  283 (392)
T ss_dssp             HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCEETTEEGGGS
T ss_pred             HHHHHHHHHHHHHH-----HHHHHHHHHHHHHhcCeeCCcchhhh
Confidence            999997  778889     99999999 99999999999999864

>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A*

Probab=100.00  E-value=8.7e-52  Score=393.04  Aligned_cols=268  Identities=27%  Similarity=0.436  Sum_probs=250.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCC-hhHHHHHHhCcccCC-cccCCCCCCc--cHHHHHHHHHHHH
Q 020535           51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFP-FHVIPKLGALRVAGG-TIKGYGCPGH--SVTGAAIAIAEIA  126 (325)
Q Consensus        51 ~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p-~~~~~~l~~~Gl~~~-~p~~~GG~g~--s~~~~~~v~e~la  126 (325)
                      |++.++++++++++.+++|+++++.|.+.+.|+.+.+| .++|++|++.||+++ +|++|||.|+  +..+.+.++|+++
T Consensus         1 M~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~~~v~eela   80 (397)
T 3mpi_A            1 MDFNLSKELQMLQKEVRNFVNKKIVPFADQWDNENHFPYEEAVRPMGELGFFGTVIPEEYGGEGMDQGWLAAMIVTEEIA   80 (397)
T ss_dssp             CBCCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCTTTTHHHHHHTTTTCTTSCGGGTSCCCTTHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHhcCCCCHHHHHHHHHHCCCCccCCChhhCCCCCCCCHHHHHHHHHHHH
Confidence            45668999999999999999999999999999999999 999999999999999 9999999999  9999999999999


Q ss_pred             ccCCcchhHHHHhhhHHHH-HHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeec
Q 020535          127 RVDASCSTFILVHSSLAML-TIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRW  205 (325)
Q Consensus       127 ~~~~s~~~~~~~~~~~~~~-~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~  205 (325)
                      +.++++++.+.+|. ++.. +|..+|+++||++|+|++++|+.++|+++|||++|||+..+.|+|++++|||+|||+|.|
T Consensus        81 ~~~~~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~  159 (397)
T 3mpi_A           81 RGSSALRVQLNMEV-LGCAYTILTYGSEALKKKYVPKLSSAEFLGGFGITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTW  159 (397)
T ss_dssp             HHCHHHHHHHHHHT-TTTHHHHHHHSCHHHHHHHHHHHHTTSSCCCEECCBTTBSSCGGGCCCEEEECSSEEEEEEEEEE
T ss_pred             hhCchHHHHHHHHH-HhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccCeEEEEEeCCEEEEEEEEEe
Confidence            99999988777764 4445 899999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCEEEEEEEeCC---CCCeEEEEE-eCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHH
Q 020535          206 IGNSTFADVLVIFARNTT---TNQINGYLV-KKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDT  280 (325)
Q Consensus       206 it~~~~Ad~~~v~a~~~~---~~~~~~~lv-~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~  280 (325)
                      +||+..||+++|+|++++   ..++++|+| |++.|||++ +.|+++|+++++++++.|+||+||.++++|.. .|+...
T Consensus       160 ~s~~~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~~~Gv~v-~~~~~~G~~~~~~~~v~fddv~Vp~~~~lg~~~~g~~~~  238 (397)
T 3mpi_A          160 ISNAAQADVLIYYAYTDKAAGSRGLSAFVIEPRNFPGIKT-SNLEKLGSHASPTGELFLDNVKVPKENILGKPGDGARIV  238 (397)
T ss_dssp             EETTTTCSSEEEEEESCGGGGGGSEEEEEECTTTSTTEEE-EECCCSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHH
T ss_pred             eCCCcccCEEEEEEEcCCCCCCCceEEEEEEcCCCCCeEe-ccCccccCcCCceeEEEEeeEEECHHHcCCCCCchHHHH
Confidence            999999999999999864   246999999 999999999 89999999999999999999999999999985 488889


Q ss_pred             HhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535          281 SKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       281 ~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~  325 (325)
                      ...++..|+  ++.++|     +++++++. ++|+++|+|||+||+++
T Consensus       239 ~~~~~~~r~~~aa~~lG-----~a~~al~~a~~~a~~R~~fg~~i~~~  281 (397)
T 3mpi_A          239 FGSLNHTRLSAAAGGVG-----LAQACLDAAIKYCNERRQFGKPIGDF  281 (397)
T ss_dssp             HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCEETTEEGGGS
T ss_pred             HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhCcccCCchhhh
Confidence            999999998  778889     99999999 99999999999999874

>4hr3_A Putative acyl-COA dehydrogenase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: FAD; 1.80A {Mycobacterium abscessus}

Probab=100.00  E-value=1.2e-51  Score=394.35  Aligned_cols=270  Identities=19%  Similarity=0.209  Sum_probs=241.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhC------------------CCChhHHHHHHhCcccCC-cccCCCCC
Q 020535           51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKA------------------EFPFHVIPKLGALRVAGG-TIKGYGCP  111 (325)
Q Consensus        51 ~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~------------------~~p~~~~~~l~~~Gl~~~-~p~~~GG~  111 (325)
                      |++.++++++++++.+++|+++++.|...+.++..                  .+|+++|++|++.||+++ +|++|||.
T Consensus         5 M~~~~~~~~~~l~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~G~~~~~~P~~~GG~   84 (415)
T 4hr3_A            5 MDFAPSARAAELIAAVREFIDAEVMPVERAVLAHHDELLGARAGTTAELWHVPPELDSLKAKARAAGLWNLFLPDPELGG   84 (415)
T ss_dssp             --CCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCSCSGGGGSCCTHHHHHHHHHHHTTCSSTTCCCTTTSC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhCCccHHHHhhhccccccccccccccccCcchhHHHHHHHHHhCCCcCcCCCHHHCCC
Confidence            66779999999999999999999988887766543                  267899999999999999 99999999


Q ss_pred             CccHHHHHHHHHHHHccCCcchhHHH-HhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCC-CCCCCCCCceE
Q 020535          112 GHSVTGAAIAIAEIARVDASCSTFIL-VHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPA-YGSDASALNTT  189 (325)
Q Consensus       112 g~s~~~~~~v~e~la~~~~s~~~~~~-~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~-~Gsd~~~~~~~  189 (325)
                      |+++.+.+.++|++++.+.+...+.. .+...+...|..+|+++||++|||++++|+.++|+++|||+ +|||+..++|+
T Consensus        85 g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~~gsd~~~~~t~  164 (415)
T 4hr3_A           85 GLSNSEYAPLAEQMGRSLFAPTVFNCNAPDSGNMEVLHRYGSQEQKEVWLEPLLEGDIRSAFCMTEPDVASSDATNMAAT  164 (415)
T ss_dssp             CCCHHHHHHHHHHHTTCSSHHHHTTCCTTHHHHHHHHHHHCCHHHHHHTHHHHHTTSCEEEEECCCTTSCTTSGGGCCCE
T ss_pred             CCCHHHHHHHHHHHhcccchHHHHHHhccccchHHHHHHhCCHHHHHHHHHHHhCCCceeEEEEcCCCCCCCchhhCeeE
Confidence            99999999999999998754433221 22223346889999999999999999999999999999999 99999999999


Q ss_pred             EEEeCCEEEEEeEeecccCCCC--CCEEEEEEEeCCC----CCeEEEEEeCCCCCeEEeccCCccCccccc--eeeEEEe
Q 020535          190 ATKVEGGWILEGQKRWIGNSTF--ADVLVIFARNTTT----NQINGYLVKKDAPGLTVTKIENKIGLRIVQ--NGDILLK  261 (325)
Q Consensus       190 a~~~~~g~~lnG~K~~it~~~~--Ad~~~v~a~~~~~----~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~--~~~v~f~  261 (325)
                      |++++|||+|||+|.||||+..  ||+++|+|+++++    +++++|+||++.|||++.+.|+++|+++++  ++++.|+
T Consensus       165 A~~~g~g~~lnG~K~~is~a~~~~Ad~~~v~a~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~r~~~~~~~~v~fd  244 (415)
T 4hr3_A          165 AVVEGDEVVINGRKWWSTGVGHPDCKVIIFMGLTDPNAHRYARHSMVLVPMDTPGITVERMLPTMGFYDEPGGHGVVSFD  244 (415)
T ss_dssp             EEEETTEEEEEEEEEEEETTTSTTEEEEEEEEECCTTSCTTSSEEEEEEETTSTTEEEEEECCBTTBCCTTTCEEEEEEE
T ss_pred             EEEECCEEEEeeEEeeECCCCCCCCCEEEEEEEeCCCCCCCCceEEEEEEcCCCceEecCCCCccccCCCCCCeeEEEEc
Confidence            9999999999999999999966  9999999998642    579999999999999999999999999987  9999999


Q ss_pred             eeeeCCCCCcCCC-CChHHHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535          262 KVFVPDEDRLPGV-NSFQDTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       262 ~v~Vp~~~~lg~~-~g~~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~  325 (325)
                      ||+||.+++||.. .|+......++..|+  ++.++|     +++++++. ++|+++|+|||+||+++
T Consensus       245 dv~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~~G-----~a~~al~~a~~~a~~R~~fg~~i~~~  307 (415)
T 4hr3_A          245 NVRLPADAFIAGPGKGFEIAQGRLGPGRVHHAMRLIG-----LAEVALEHACRRGLDRTAFGKPLVNL  307 (415)
T ss_dssp             EEEEEGGGBSSCTTCHHHHHHHHCSHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCEETTEEGGGS
T ss_pred             cEEECHHHcCCCCCchHHHHHHHHhHHHHHHHHHHHH-----HHHHHHHHHHHHHhcCccCCCcHHHh
Confidence            9999999999985 589999999999998  888899     99999999 99999999999999874

>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A*

Probab=100.00  E-value=1.9e-51  Score=408.84  Aligned_cols=284  Identities=23%  Similarity=0.315  Sum_probs=255.0

Q ss_pred             hhhhcccCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHH----HHHHHHHHHHHhhccccHHHHHHhCCCChhH
Q 020535           16 ARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQ----AVRMKVRECMEKEIAPIMAEYWEKAEFPFHV   91 (325)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~~l~~~~~----~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~   91 (325)
                      ++++|.|+|.++.++++|.  .                 ++++++    ++++.+++|+++.+.|.  +.|+...+|.++
T Consensus        26 ~~~lf~g~~~~~~~~~~p~--~-----------------l~~~~~~~~~~l~~~~~~~~~~~~~~~--~~d~~~~~p~~~   84 (607)
T 2uxw_A           26 AVGMFKGQLTTDQVFPYPS--V-----------------LNEEQTQFLKELVEPVSRFFEEVNDPA--KNDALEMVEETT   84 (607)
T ss_dssp             HHHHTTTCCCCTTTSSCCC--C-----------------CCHHHHHHHHHHHHHHHHHHHHTCCHH--HHHHHTSCCHHH
T ss_pred             HHHhcCCCCCHHHhCCCCC--C-----------------CCHHHHHHHHHHHHHHHHHHHhhcCHH--HhccccCCCHHH
Confidence            5788999999888876442  1                 455554    48899999999887653  356778999999


Q ss_pred             HHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCcee
Q 020535           92 IPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA  170 (325)
Q Consensus        92 ~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~  170 (325)
                      |++|++.||+++ +|++|||.|++..+.+.++|++++.++++++++..|..++..+|..+|+++||++|+|++++|++++
T Consensus        85 ~~~l~e~Gl~~l~~P~e~GG~gl~~~~~~~v~e~l~~~~~s~a~~~~~~~~~g~~~l~~~Gt~eqk~~~Lp~l~~G~~~~  164 (607)
T 2uxw_A           85 WQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVA  164 (607)
T ss_dssp             HHHHHHTTTTCTTSCGGGTSCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHTTTTHHHHHHCCHHHHHHHHHHHHTTSSCE
T ss_pred             HHHHHHcCCcCCCCChhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeEE
Confidence            999999999999 9999999999999999999999999999888777776565678899999999999999999999999


Q ss_pred             EEEecCCCCCCCCCCCceEEEEeC--CEEEEEeEeecccCCCCCCEEEEEEEeCC--------CCCeEEEEEeCCCCCeE
Q 020535          171 CWALTEPAYGSDASALNTTATKVE--GGWILEGQKRWIGNSTFADVLVIFARNTT--------TNQINGYLVKKDAPGLT  240 (325)
Q Consensus       171 ~~a~tEp~~Gsd~~~~~~~a~~~~--~g~~lnG~K~~it~~~~Ad~~~v~a~~~~--------~~~~~~~lv~~~~~Gv~  240 (325)
                      |+++|||++|||+..++|+|++++  ++|+|||+|.||||++.||+++|+|++++        .+++++|+||++.|||+
T Consensus       165 ~~alTEp~aGSD~~~~~t~A~~~~dG~~y~LnG~K~~is~~~~Ad~~lV~Ar~~~~~~~~g~~~~gis~flVp~~~~Gv~  244 (607)
T 2uxw_A          165 AFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGIT  244 (607)
T ss_dssp             EEECCBTTBSSCGGGCCCEEEECTTSSEEEEEEEEEEEETTTTCSEEEEEEEEEEECTTTCCEEEEEEEEEEEGGGSSEE
T ss_pred             EEEecCCCCCCCcccceeEEEEeCCCCEEEEEeEEEeecCCcccCEEEEEEEecCCCcccCCCCCceEEEEEeCCCCCeE
Confidence            999999999999999999999974  37999999999999999999999999842        24689999999999999


Q ss_pred             EeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcc
Q 020535          241 VTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDS  316 (325)
Q Consensus       241 ~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~  316 (325)
                      +.+.|+++|+++++++++.|+||+||.+++||.. .|++.+...++.+|+  ++.++|     +++++++. ++|+++|+
T Consensus       245 v~~~~~~~G~rg~~t~~v~fddv~VP~~~llG~~g~G~~~~~~~l~~~Rl~~aa~~~G-----~a~~al~~a~~ya~~R~  319 (607)
T 2uxw_A          245 HGPPEKKMGIKASNTAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALAG-----TMRGIIAKAVDHATNRT  319 (607)
T ss_dssp             ECCCCCCSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCE
T ss_pred             EecCccccCCCCCCeeEEEeccEEecHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999975 489999999999998  788889     99999999 99999999


Q ss_pred             cCCCCCCCC
Q 020535          317 GWLAPLQII  325 (325)
Q Consensus       317 ~fG~pl~~~  325 (325)
                      |||+||+++
T Consensus       320 qfG~pi~~~  328 (607)
T 2uxw_A          320 QFGEKIHNF  328 (607)
T ss_dssp             ETTEEGGGS
T ss_pred             ccCCchhhc
Confidence            999999874

>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1

Probab=100.00  E-value=1.9e-51  Score=386.81  Aligned_cols=254  Identities=20%  Similarity=0.266  Sum_probs=235.3

Q ss_pred             HHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhhH
Q 020535           64 MKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSL  142 (325)
Q Consensus        64 ~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~~~~~~~~~~~  142 (325)
                      +.+++|+++++.|.+.+.|+.+.+|+++|++|++.||+++ +|++|||.|+++.+.+.++|++++.++++++.+.+|..+
T Consensus         2 ~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~   81 (366)
T 1r2j_A            2 PERDALLTDLVGDRAAEWDTSGELPRDLLVRLGADGLLCAEVAAEHGGLGLGSRENGEFTAHVGSLCSSLRSVMTSQGMA   81 (366)
T ss_dssp             -CCHHHHHHHHSSCHHHHHHHTCCCHHHHHHHHHTTTTSTTSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhccccHHHHhhcCCCCHHHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHHHHHHHChHHHHHHHHHHHH
Confidence            4568899999999988888999999999999999999999 999999999999999999999999999988777776545


Q ss_pred             HHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCCCCCEEEEEEEeC
Q 020535          143 AMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT  222 (325)
Q Consensus       143 ~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~~Ad~~~v~a~~~  222 (325)
                      +...|. +|+++||++|+|++++|+ +.|+++|||++|||+..+.|+|++++|||+|||+|.||||+..||+++|+++++
T Consensus        82 ~~~~l~-~g~~~q~~~~l~~~~~G~-~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad~~~v~a~~~  159 (366)
T 1r2j_A           82 AWTVQR-LGDAGQRATFLKELTSGK-LAAVGFSERQAGSDLSAMRTRVRLDGDTAVVDGHKVWTTAAAYADHLVVFGLQE  159 (366)
T ss_dssp             HHHHHH-HSCHHHHHHHHHHTTCC--CEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEETTTTTCSEEEEEEBCS
T ss_pred             HHHHHH-hCCHHHHHHHHHHHhCCC-eeEEEeCCCCCCCchhhCEeEEEEeCCEEEEEEEEecccCCcccCEEEEEEEeC
Confidence            667788 999999999999999999 999999999999999999999999999999999999999999999999999986


Q ss_pred             CCCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHH-HhhchhhhH--HHhhcccCc
Q 020535          223 TTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDT-SKVSEGEET--VWSTISSFS  298 (325)
Q Consensus       223 ~~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~-~~~l~~~r~--aa~~~G~~~  298 (325)
                      + +++++|+||++.|||++.+.|+++|+++++++++.|+||+||.++++|.. .|+... ...++..|+  ++.++|   
T Consensus       160 ~-~g~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~~l~~~r~~~aa~~~G---  235 (366)
T 1r2j_A          160 D-GSGAVVVVPADTPGVRVERVPKPSGCRAAGHADLHLDQVRVPAGAVLAGSGASLPMLVAASLAYGRKSVAWGCVG---  235 (366)
T ss_dssp             S-SCCEEEEEETTSTTEEEEECSSCSSSTTSCCEEEEEEEEEEEGGGBCTTTTSCTTTTTHHHHHHHHHHHHHHHHH---
T ss_pred             C-CceEEEEEECCCCCeEecCCcCCccCCCCCeeEEEEeeEEEcHHHcCCCCCccHHHHHHHHhhHHHHHHHHHHHH---
Confidence            4 37899999999999999999999999999999999999999999999874 488877 788888998  888899   


Q ss_pred             HHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535          299 DQPAETCSDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       299 ~~~a~~al~~-~~ya~~R~~fG~pl~~~  325 (325)
                        +++++++. ++|+++|+|||+||+++
T Consensus       236 --~a~~al~~a~~ya~~R~~fg~~i~~~  261 (366)
T 1r2j_A          236 --ILRACRTAAVAHARTREQFGRPLGDH  261 (366)
T ss_dssp             --HHHHHHHHHHHHHTTCEETTEEGGGS
T ss_pred             --HHHHHHHHHHHHHhcCccCCCchhhh
Confidence              99999999 99999999999999874

>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis}

Probab=100.00  E-value=3e-51  Score=406.44  Aligned_cols=264  Identities=26%  Similarity=0.444  Sum_probs=242.9

Q ss_pred             CCHHHHHHHHHHHHHHHhhccccHHHHHHhC-CCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcc
Q 020535           55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKA-EFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASC  132 (325)
Q Consensus        55 l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~-~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~  132 (325)
                      ++++++++++.+++|+++++.|...+.++.. .+|.++|++|.+.||+++ +|++|||.|++..+.+.++|++++.+ +.
T Consensus        33 lt~eq~~l~~~vr~f~~~~~~p~~~~~d~~~~~~~~~~~~~l~e~Gl~gl~vPee~GG~G~~~~~~~~v~Eel~~~~-~~  111 (597)
T 3owa_A           33 FSSEHKMIAKTTEDFIVNEVLPELEYLEQHEFDRSVRLLKEAGELGLLGADVPEEYGGIGLDKVSSALIAEKFSRAG-GF  111 (597)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTGGGHHHHTTTCHHHHHHHHHHHHHTTTTCTTSCGGGTCCCCCHHHHHHHHHHHGGGT-HH
T ss_pred             CCHHHHHHHHHHHHHHHHhCchhHHHHHhcCCcCCHHHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHccc-hH
Confidence            7899999999999999999999888877665 688999999999999999 99999999999999999999999986 44


Q ss_pred             hhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCC--EEEEEeEeecccCCC
Q 020535          133 STFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEG--GWILEGQKRWIGNST  210 (325)
Q Consensus       133 ~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~--g~~lnG~K~~it~~~  210 (325)
                      +..+..|..++..+|..+|+++||++|||++++|++++|+++|||++|||+..++|+|+++++  +|+|||+|.||||+.
T Consensus       112 ~~~~~~~~~~~~~~l~~~Gt~eQk~~~Lp~la~Ge~~~a~alTEp~aGSD~~~~~T~A~~~~dG~~yvLnG~K~~is~a~  191 (597)
T 3owa_A          112 AITHGAHVGIGSLPIVLFGNEEQKKKYLPLLATGEKLAAYALTEPGSGSDALGAKTTARLNAEGTHYVLNGEKQWITNSA  191 (597)
T ss_dssp             HHHHHHHHTTTTHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECTTSSEEEEEEEEEEEETTT
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCcceeeEecCCCCCCCcccceeEEEEeCCCCEEEEeeEEEEeCCCc
Confidence            444556655666678899999999999999999999999999999999999999999999644  599999999999999


Q ss_pred             CCCEEEEEEEeCCCCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhchhhhH
Q 020535          211 FADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVSEGEET  289 (325)
Q Consensus       211 ~Ad~~~v~a~~~~~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~~~r~  289 (325)
                      .||+++|+|++++ +++++|+||++.|||++.+.|+++|+++++++++.|+||+||.+++||.. .|+......++.+|+
T Consensus       192 ~Ad~~lV~Art~~-~g~s~flV~~~~pGv~v~~~~~~~Glrgs~t~~v~fddV~VP~~~lLG~~g~G~~~~~~~l~~~R~  270 (597)
T 3owa_A          192 FADVFIVYAKIDG-EHFSAFIVEKDYAGVSTSPEEKKMGIKCSSTRTLILEDALVPKENLLGEIGKGHIIAFNILNIGRY  270 (597)
T ss_dssp             TCSEEEEEEEETT-TEEEEEEEETTSTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEEEeCC-CceEEEEEeCCCCCeEEecccccccCCCCCceEEEEeceeecHHHhcCcccchHHHHHHhhHhHHH
Confidence            9999999999864 47999999999999999999999999999999999999999999999975 589999999999998


Q ss_pred             --HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535          290 --VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       290 --aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~  325 (325)
                        ++.++|     +++++++. ++|+++|+|||+||+++
T Consensus       271 ~~aa~~lG-----~a~~al~~a~~ya~~R~qfG~pi~~~  304 (597)
T 3owa_A          271 KLGVGTVG-----SAKRAVEISAQYANQRQQFKQPIARF  304 (597)
T ss_dssp             HHHHHHHH-----HHHHHHHHHHHHHHHCEETTEEGGGS
T ss_pred             HHHHHHHH-----HHHHHHHHHHHHHHhCeeCCcccccc
Confidence              888899     99999999 99999999999999875

>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina}

Probab=100.00  E-value=2.9e-49  Score=380.25  Aligned_cols=269  Identities=19%  Similarity=0.258  Sum_probs=241.3

Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHH----hC-CCC--hhHHHHHHhCcccCC-cccCCCCCCccHHHHHHH
Q 020535           50 QFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWE----KA-EFP--FHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIA  121 (325)
Q Consensus        50 ~~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~----~~-~~p--~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v  121 (325)
                      .|++.+++|++++++.+++|+++++.|...++++    .. .+|  +++|++|++.||+++ +|++|||.|+++.+.+.+
T Consensus         2 ~m~~~~~~e~~~l~~~~r~f~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v   81 (438)
T 3mkh_A            2 AIDFHLSASQKGTYQAARSLARNLLMPARQTYLQHPPNSPLRFQSTQPTYAAAVSAGILKGQISPAHGGTGGTLIESAIL   81 (438)
T ss_dssp             CCBCCCCHHHHHHHHHHHHHHHHTHHHHHHHHTTSCTTCHHHHHTTHHHHHHHHHTTTTGGGSCGGGTCCCCCHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhcCcHHHHHhhccccccCcCCCcHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHH
Confidence            4677799999999999999999999988776643    22 455  899999999999999 999999999999999999


Q ss_pred             HHHHHccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcC--CceeEEEecCCCCCC-----CCCCCceEEEEeC
Q 020535          122 IAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQL--NTIACWALTEPAYGS-----DASALNTTATKVE  194 (325)
Q Consensus       122 ~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g--~~~~~~a~tEp~~Gs-----d~~~~~~~a~~~~  194 (325)
                      +|++++.++++++.+..+ .++...+..+|+++ |++|||++++|  +.++|+++|||++||     |+..++|+|++++
T Consensus        82 ~eela~~~~~~~~~~~~~-~~~~~~l~~~g~~~-~~~~l~~~~~G~g~~~~~~a~tEp~~gs~~~~sd~~~~~t~A~~~g  159 (438)
T 3mkh_A           82 VEECYSVEPSAALTIFAT-GLGLTPINLAAGPQ-HAEFLAPFLSGEGSPLASLVFSEPGGVANALEKGAPGFQTTARLEG  159 (438)
T ss_dssp             HHHHHHHCHHHHHHHHHH-HHHHHHHHHHCCGG-GHHHHGGGSSSCSCCCEEEECCCTTCCTTTTCTTSCCCSCEEEEET
T ss_pred             HHHHHhhChhHHHHHHHh-hHHHHHHHhhCCHH-HHHHHHHHhcCCCCceEEEEEccCCCCCCccccccccceeEEEEeC
Confidence            999999999888765444 35556778899999 99999999997  589999999999998     6899999999999


Q ss_pred             CEEEEEeEeecccCCC-----CCCEEEEEEEeCC---------CCCeEEEEEeCCC-----CC-eEEeccCCccCccccc
Q 020535          195 GGWILEGQKRWIGNST-----FADVLVIFARNTT---------TNQINGYLVKKDA-----PG-LTVTKIENKIGLRIVQ  254 (325)
Q Consensus       195 ~g~~lnG~K~~it~~~-----~Ad~~~v~a~~~~---------~~~~~~~lv~~~~-----~G-v~~~~~~~~~G~~~~~  254 (325)
                      |||+|||+|.||||+.     .||+++|+|+++.         .+++++|+||++.     || |++.+.|+++|+++++
T Consensus       160 ~g~~lnG~K~~is~a~~~~~~~Ad~~~v~a~~~~~~~~~~~~~~~g~~~flV~~~~~~~~~pG~v~v~~~~~~~G~r~~~  239 (438)
T 3mkh_A          160 DEWVINGEKMWATNCAGWDFKGCDLACVVCRDATTPLEEGQDPENKVMIILVTRADLDRNGEGSFEVLRHVATPGHTSVS  239 (438)
T ss_dssp             TEEEEEEEECSCTTTTCTTSSCCSEEEEEEEECSSCCCTTCCGGGGEEEEEEEHHHHHHHCTTSEEEEECCCCSSCTTCC
T ss_pred             CEEEEEeEEEEecCCCccccccCcEEEEEEEecCcccCcccCCCCceEEEEEecCccccCCCCcEEecCcCCCcCCcCCC
Confidence            9999999999999997     7999999999842         1469999999875     88 9999999999999999


Q ss_pred             eeeEEEeeeeeCCCCCcCCC-CChHHHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCC-CCCCCC
Q 020535          255 NGDILLKKVFVPDEDRLPGV-NSFQDTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWL-APLQII  325 (325)
Q Consensus       255 ~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG-~pl~~~  325 (325)
                      ++++.|+||+||.+++||.. .|+..+...++.+|+  ++.++|     +++++++. ++|+++|+||| +||+++
T Consensus       240 ~~~v~fddv~VP~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~lG-----~a~~al~~a~~ya~~R~~~g~~pi~~~  310 (438)
T 3mkh_A          240 GPHVRYTNVRVPTKNVLCPAGQGAKVAFGAFDGSAVLVGAMGVG-----LMRAAFDAALKFAKEDNRGGAVPLLER  310 (438)
T ss_dssp             CCEEEEEEEEEEGGGEEECTTTHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCTTCSSCGGGS
T ss_pred             ceEEEECcEEECHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhcEeCCCeecccc
Confidence            99999999999999999975 489999999999998  888899     99999999 99999999999 999874

>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A*

Probab=100.00  E-value=1.9e-48  Score=374.80  Aligned_cols=269  Identities=19%  Similarity=0.222  Sum_probs=241.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHh----CCCC--hhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHH
Q 020535           51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEK----AEFP--FHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIA  123 (325)
Q Consensus        51 ~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~----~~~p--~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e  123 (325)
                      |++.++++++++++.+++|+++++.|...+.++.    +.+|  .++|++|++.||+++ +|++|||.|++..+.+.++|
T Consensus         2 M~~~~~~e~~~l~~~~r~f~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~e   81 (439)
T 2c12_A            2 VDFKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILE   81 (439)
T ss_dssp             CBCCCCHHHHHHHHHHHHHHHHTGGGHHHHHTTCSSHHHHHHTTHHHHHHHHHTTTTGGGSBGGGTCCBCCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhCChhHHHHhhcccccCCCCChHHHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHH
Confidence            4556899999999999999999999987766542    3455  899999999999999 99999999999999999999


Q ss_pred             HHHccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhh--cCCceeEEEecCCCCCC-----CCCCCceEEEEeCCE
Q 020535          124 EIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLA--QLNTIACWALTEPAYGS-----DASALNTTATKVEGG  196 (325)
Q Consensus       124 ~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~--~g~~~~~~a~tEp~~Gs-----d~~~~~~~a~~~~~g  196 (325)
                      ++++.++++++.+..|. ++..+|..+|+++||++|+|+++  +|+.++|+++|||++||     |+..++|+|++++||
T Consensus        82 ela~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~~~G~~~~~~a~tEp~~Gs~~~~sd~~~~~t~A~~~~~g  160 (439)
T 2c12_A           82 ELFAVEPATSITIVATA-LGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNE  160 (439)
T ss_dssp             HHHTTCCTTHHHHHHHH-HHHHHHHHSSCHHHHHHHTGGGGSSCSCCCEEEECCCTTCSTTTTCTTSCCCSCEEEEETTE
T ss_pred             HHHhhChHHHHHHHHhH-HHHHHHHHhCCHHHHHHHHHHHhhcCCCEEEEEEecCCCCCCCccccccccceeEEEEcCCE
Confidence            99999999987766663 55667889999999999999999  69999999999999998     588899999999999


Q ss_pred             EEEEeEeecccCCC-----CCCEEEEEEEe-C----CC-------CCeEEEEEeCCCC------CeEEeccCCccCcccc
Q 020535          197 WILEGQKRWIGNST-----FADVLVIFARN-T----TT-------NQINGYLVKKDAP------GLTVTKIENKIGLRIV  253 (325)
Q Consensus       197 ~~lnG~K~~it~~~-----~Ad~~~v~a~~-~----~~-------~~~~~~lv~~~~~------Gv~~~~~~~~~G~~~~  253 (325)
                      |+|||+|.||||+.     .||+++|+|++ +    ++       .++++|+||++.|      |+++.+.|+++|++++
T Consensus       161 ~~lnG~K~~is~~~~~~~~~Ad~~~v~ar~~~~~~~~~~~~~~~~~g~~~flV~~~~pGv~~~~Gv~v~~~~~~~G~r~~  240 (439)
T 2c12_A          161 WVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITT  240 (439)
T ss_dssp             EEEEEEEECCTTTTTTTSSCCSEEEEEEEECSCTTSCCCTTSCGGGGEEEEEECHHHHHTSCGGGEEEEECCCBSSCTTC
T ss_pred             EEEEeEEEeecCCCccccccCcEEEEEEEcCCcccCccccccCCCCceEEEEEECCCCcccCCCceEeCCcccccccCCC
Confidence            99999999999997     89999999998 5    21       3689999999988      8889999999999999


Q ss_pred             ceeeEEEeeeeeCCCCCcCCCC-ChH-HHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhh-cccCCCCCCCC
Q 020535          254 QNGDILLKKVFVPDEDRLPGVN-SFQ-DTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSH-DSGWLAPLQII  325 (325)
Q Consensus       254 ~~~~v~f~~v~Vp~~~~lg~~~-g~~-~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~-R~~fG~pl~~~  325 (325)
                      +++++.|+||+||.+++||..+ |+. .....++..|+  ++.++|     +++++++. ++|+++ |++||+||+++
T Consensus       241 ~~~~v~fddv~VP~~~~lg~~~~g~~~~~~~~l~~~r~~~aa~~~G-----~a~~al~~a~~ya~~rr~~~G~~i~~~  313 (439)
T 2c12_A          241 SGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIG-----TARAAFEEALVFAKSDTRGGSKHIIEH  313 (439)
T ss_dssp             CCCEEEEEEEEEEGGGBCSCTTHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCTTSSSCGGGS
T ss_pred             CceEEEEccEEecHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhceeeCCeehhcc
Confidence            9999999999999999998754 788 88888999998  888889     99999999 999996 88999999864

>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens}

Probab=100.00  E-value=2.2e-48  Score=373.17  Aligned_cols=268  Identities=20%  Similarity=0.239  Sum_probs=230.7

Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHhhccccHH---HHHHh-----CC-----CChhHHHHHHhCcccCC-cccCCCCCCccH
Q 020535           50 QFDDLLTSEEQAVRMKVRECMEKEIAPIMA---EYWEK-----AE-----FPFHVIPKLGALRVAGG-TIKGYGCPGHSV  115 (325)
Q Consensus        50 ~~~~~l~~~~~~l~~~~~~f~~~~~~~~~~---~~d~~-----~~-----~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~  115 (325)
                      .|++.++++++++++.+++|+++++.|...   +.++.     ..     +|.++|++|++.||+++ +|+   |.|++.
T Consensus        18 ~m~~~~~~e~~~l~~~~r~f~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~P~---G~g~~~   94 (428)
T 2wbi_A           18 GQLFVQTRKGQEVLIKVKHFMKQHILPAEKEVTEFYVQNENSVDKWGKPLVIDKLKEMAKVEGLWNLFLPA---VSGLSH   94 (428)
T ss_dssp             ----CCCHHHHHHHHHHHHHHHHTHHHHHHHHHC----------CCSCCHHHHHHHHHHHHTTCCSTTCHH---HHCCCH
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHhhCCchhcchhHHhhhccccccccCCcccHHHHHHHHHHCCCCeecCCC---CCCCCH
Confidence            366678999999999999999999887665   44432     23     35789999999999999 898   789999


Q ss_pred             HHHHHHHHHHHccCCcc-hhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCC-CCCCCCCCceEEEEe
Q 020535          116 TGAAIAIAEIARVDASC-STFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPA-YGSDASALNTTATKV  193 (325)
Q Consensus       116 ~~~~~v~e~la~~~~s~-~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~-~Gsd~~~~~~~a~~~  193 (325)
                      .+.+.++|++++.+.+. ++....+..++...|..+|+++||++|+|++++|+.++|+++|||+ +|||+..+.|+|+++
T Consensus        95 ~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~G~~~~~~a~tEp~~aGsd~~~~~t~A~~~  174 (428)
T 2wbi_A           95 VDYALIAEETGKCFFAPDVFNCQAPDTGNMEVLHLYGSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSIQRD  174 (428)
T ss_dssp             HHHHHHHHHHTTSTTHHHHTTCCTTHHHHHHHHHHHCCHHHHHHTHHHHHHTSSEEEEECCCTTSCTTSGGGCCCEEEEE
T ss_pred             HHHHHHHHHHHhhcchhhhHhhhccchhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEEecCCcCCCCcccceEEEEEe
Confidence            99999999999987532 2211222224566888999999999999999999999999999999 999999999999999


Q ss_pred             CCEEEEEeEeecccCCCC--CCEEEEEEEeCCC-----CCeEEEEEeCCCCCeEEeccCCccCccccc---eeeEEEeee
Q 020535          194 EGGWILEGQKRWIGNSTF--ADVLVIFARNTTT-----NQINGYLVKKDAPGLTVTKIENKIGLRIVQ---NGDILLKKV  263 (325)
Q Consensus       194 ~~g~~lnG~K~~it~~~~--Ad~~~v~a~~~~~-----~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~---~~~v~f~~v  263 (325)
                      +|||+|||+|.||||+..  ||+++|+|+++++     +++++|+||++.|||++.+.|+++|+++++   ++++.|+||
T Consensus       175 ~~g~~lnG~K~~is~a~~~~Ad~~~v~art~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~~~~v~fddv  254 (428)
T 2wbi_A          175 EDSYVINGKKWWSSGAGNPKCKIAIVLGRTQNTSLSRHKQHSMILVPMNTPGVKIIRPLSVFGYTDNFHGGHFEIHFNQV  254 (428)
T ss_dssp             TTEEEEEEEEEEEETTTSTTEEEEEEEEECCCTTSCGGGCEEEEEEETTSTTEEEEEECCBTTBCCGGGCCEEEEEEEEE
T ss_pred             CCEEEEEeEEeccCCCCCCcCCEEEEEEEeCCccCCCCCceEEEEEECCCCcEEecCCCCccccCCCCCCCeEEEEeCce
Confidence            999999999999999987  9999999998643     368999999999999999999999999984   999999999


Q ss_pred             eeCCCCCcCCC-CChHHHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535          264 FVPDEDRLPGV-NSFQDTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       264 ~Vp~~~~lg~~-~g~~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~  325 (325)
                      +||.+++||.. .|+......++.+|+  ++.++|     +++++++. ++|+++|+|||+||+++
T Consensus       255 ~VP~~~~lg~~g~g~~~~~~~l~~~r~~~aa~~~G-----~a~~al~~a~~ya~~R~~fG~~i~~~  315 (428)
T 2wbi_A          255 RVPATNLILGEGRGFEISQGRLGPGRIHHCMRTVG-----LAERALQIMCERATQRIAFKKKLYAH  315 (428)
T ss_dssp             EEEGGGBCSCTTCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCEETTEEGGGS
T ss_pred             EECHHHhcCCccchHHHHHHHHHhHHHHHHHHHHH-----HHHHHHHHHHHHHhhCcccCCChhhh
Confidence            99999999974 588888888999998  888889     99999999 99999999999999864

>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea}

Probab=100.00  E-value=1.5e-44  Score=342.85  Aligned_cols=259  Identities=19%  Similarity=0.217  Sum_probs=223.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCC-ccHHHHHHHHHHHHcc
Q 020535           51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPG-HSVTGAAIAIAEIARV  128 (325)
Q Consensus        51 ~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g-~s~~~~~~v~e~la~~  128 (325)
                      ++..++++++++++.+++|+. .+.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.| .++.+.+.++|++++.
T Consensus         5 ~~~~lt~e~~~~~~~~r~~~~-~~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~~eel~~~   83 (395)
T 3mxl_A            5 LRAPLTPAGRTVVDLLAGVIP-RISAEAADRDRTGTFPVEAFEQFAKLGLMGATVPAELGGLGLTRLYDVATALMRLAEA   83 (395)
T ss_dssp             SSSCCSHHHHHHHHHHTTTHH-HHHHHHHHHHHHTCCCHHHHHHHHHHTGGGCSSCTTTTSCCCCCHHHHHHHHHHHHTT
T ss_pred             cccCCCHHHHHHHHHHHHHHH-HHhhchHHHhhhCCCCHHHHHHHHHCCCcCcCCChhhCCCCCcCHHHHHHHHHHHHhh
Confidence            556689999999999999997 4889999999999999999999999999999 999999999 9999999999999999


Q ss_pred             CCcchhHHHHhhhHHHHHH--HhcCCHHHH---HhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEe
Q 020535          129 DASCSTFILVHSSLAMLTI--ALCGSEEQK---QKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQK  203 (325)
Q Consensus       129 ~~s~~~~~~~~~~~~~~~l--~~~g~~~q~---~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K  203 (325)
                      ++++++.+.+|...+..++  ..+|+++||   ++|||++.+|+.++|+++|||++|+  ..+++   .++|||+|||+|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~qk~~~~~~l~~~~~g~~~~~~a~tEp~~~~--~~~~t---~~~~g~~lnG~K  158 (395)
T 3mxl_A           84 DASTALAWHVQLSRGLTLTYEWQHGTPPVRAMAERLLRAMAEGEAAVCGALKDAPGVV--TELHS---DGAGGWLLSGRK  158 (395)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHTSCCEECCCSBCTTCC--CEEEE---CSSSCEEEEEEE
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhhcCCHHHHhHHHHHHHHHhcCCcEEEEEecCCCCCC--CceEE---ecCCEEEEeeEE
Confidence            9998887777654444433  367999999   9999999999999999999998753  22222   268889999999


Q ss_pred             ecccCCCCCCEEEEEEEeCCC---CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcC--C-CCCh
Q 020535          204 RWIGNSTFADVLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLP--G-VNSF  277 (325)
Q Consensus       204 ~~it~~~~Ad~~~v~a~~~~~---~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg--~-~~g~  277 (325)
                      .||||+..||+++|+++++++   .++++|+||++.|||++.+.|+++|+++++++++.|+||+||.++++|  . +.++
T Consensus       159 ~~is~a~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~g~  238 (395)
T 3mxl_A          159 VLVSMAPIATHFFVHAQRRDDDGSVFLAVPVVHRDAPGLTVLDNWDGLGMRASGTLEVVFDRCPVRADELLERGPVGARR  238 (395)
T ss_dssp             EEETTGGGCSEECCCEEEECTTSCEEEECCCEETTCTTEEEECCCCBSSCTTSCCEEEEEEEEEECGGGCCEEEESSCCC
T ss_pred             EEecCccccCEEEEEEEeCCCCCCCceEEEEEECCCCceEeCCCchhcCCCCCCcceEEEcceEcCHHHhcCCCCCCccH
Confidence            999999999999999998642   358999999999999999999999999999999999999999999998  3 3466


Q ss_pred             HHHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCCCCCCC
Q 020535          278 QDTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       278 ~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~pl~~~  325 (325)
                      ......+...|+  ++.++|     +++++++. ++|++     |+||+++
T Consensus       239 ~~~~~~~~~~r~~~aa~~~G-----~a~~al~~a~~~a~-----~r~i~~~  279 (395)
T 3mxl_A          239 DAVLAGQTVSSITMLGIYAG-----IAQAARDIAVGFCA-----GRGGEPR  279 (395)
T ss_dssp             TTHHHHHHHHHGGGHHHHHH-----HHHHHHHHHHHHHH-----TTCSCCC
T ss_pred             HHHHhhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHc-----CCCCCCC
Confidence            555544555776  788888     99999999 99998     4566653

>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata}

Probab=100.00  E-value=1e-43  Score=341.73  Aligned_cols=254  Identities=19%  Similarity=0.248  Sum_probs=219.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCC-ccHHHHHHHHHHHHcc
Q 020535           51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPG-HSVTGAAIAIAEIARV  128 (325)
Q Consensus        51 ~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g-~s~~~~~~v~e~la~~  128 (325)
                      |++.++++++++++.+++|+. .+.|.+.+.++.+.+|.++|++|++.||+++ +|++|||.| .++.+++.++|++++.
T Consensus        16 m~~~lt~e~~~l~~~~r~~~~-~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~~P~~~GG~gl~~~~~~~~v~eel~~~   94 (439)
T 3m9v_A           16 LYAPVTPAGRVLLDRLAAHLP-RIRSTAAEHDRDGTFPTDTFDALRKDGLMGATVPAELGGLGVDRLYDVAVALLAVARA   94 (439)
T ss_dssp             TSSCSSHHHHHHHHHHHTTHH-HHHHHHHHHHHHTCCCHHHHHHHHHTTGGGTTSCGGGTSCCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHH-HHhhhHHHHHhcCCCCHHHHHHHHHCCCccCCCChhhCCCCCCCHHHHHHHHHHHHhh
Confidence            677799999999999999997 5888888899999999999999999999999 999999999 8999999999999999


Q ss_pred             CCcchhHHHHhhhHHHHH--HHhcCCHHH---HHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEe
Q 020535          129 DASCSTFILVHSSLAMLT--IALCGSEEQ---KQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQK  203 (325)
Q Consensus       129 ~~s~~~~~~~~~~~~~~~--l~~~g~~~q---~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K  203 (325)
                      +.++++.+.+|......+  +..+|+++|   |++||+++++|+.++|+++|||++  |...+.++   ++|||+|||+|
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~q~~~k~~~l~~l~~g~~~~~~a~tEp~~--~~~~~~t~---~~~g~vlnG~K  169 (439)
T 3m9v_A           95 DASTALALHMQLSRGLTLGYEWRHGDERARTLAERILRGMVAGDAVVCSGIKDHHT--AVTTLRPD---GAGGWLLSGRK  169 (439)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTCCCEEEECEECTT--CCCEEEEC---SSSCEEEEEEE
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEeecCCCC--CCCceeec---cCCEEEEEeEE
Confidence            999887766665443333  456799999   999999999999999999999985  43333333   68889999999


Q ss_pred             ecccCCCCCCEEEEEEEeCC---CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcC--C-CCCh
Q 020535          204 RWIGNSTFADVLVIFARNTT---TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLP--G-VNSF  277 (325)
Q Consensus       204 ~~it~~~~Ad~~~v~a~~~~---~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg--~-~~g~  277 (325)
                      .||||+..||+++|++++++   ..++++|+||+++|||++.+.|+++|++++++++|.|+||+||.+++||  . +.++
T Consensus       170 ~~~s~a~~Ad~~~v~art~~~~~~~g~~~flVp~~~pGv~i~~~~~~~G~~~~~~~~v~fddv~VP~~~~lg~~~~g~g~  249 (439)
T 3m9v_A          170 TLVSMAPVGTHFVINARTDGTDGPPRLASPVVTRDTPGFTVLDNWDGLGMRASGTVDIVFDDCPIPADHVLMRDPVGARN  249 (439)
T ss_dssp             EEETTGGGCSEEEECEEECC--CCCCEEEEEEETTCTTEEECCCCCCSSCTTSCCEEEEEEEEEECGGGEEECCC--CCC
T ss_pred             EeecCccccCEEEEEEEecCCCCCceeEEEEEECCCCCeEECCCcccCCcCCCCceeEEEeeeEcCHHHccCCCCCCchH
Confidence            99999999999999999864   2468999999999999999999999999999999999999999999998  3 2355


Q ss_pred             HHHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhc
Q 020535          278 QDTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHD  315 (325)
Q Consensus       278 ~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R  315 (325)
                      ......+...|+  ++.++|     +++++++. ++|++.|
T Consensus       250 ~~~~~~~~~~r~~~aa~~~G-----~a~~al~~a~~~a~~r  285 (439)
T 3m9v_A          250 DAVLAGQTVSSVSVLGVYVG-----VAQAAYDTAVAALERR  285 (439)
T ss_dssp             GGGHHHHHHHHGGGHHHHHH-----HHHHHHHHHHHHHHTC
T ss_pred             HHHhhchHHHHHHHHHHHHH-----HHHHHHHHHHHHHcCC
Confidence            444433445676  788888     99999999 9999944

>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP}

Probab=100.00  E-value=2.6e-44  Score=343.40  Aligned_cols=251  Identities=14%  Similarity=0.060  Sum_probs=219.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCc
Q 020535           53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDAS  131 (325)
Q Consensus        53 ~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s  131 (325)
                      +.++++++++++.+++|+++ +.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|++++.+++
T Consensus        16 ~~~~~~~~~l~~~~r~~~~~-~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~~~   94 (414)
T 2or0_A           16 NLYFQGMGRVLDRIEVVAEE-IRGQAVQSEADCRLTDAAAGLLRDSGAIRLLQPRLYGGYEVHPREFAETVMGVAALDGA   94 (414)
T ss_dssp             -------CHHHHHHHHTHHH-HHHHHHHHHHHTSCCHHHHHHHHHHTGGGTTSCGGGTCCCCCHHHHHHHHHHHHHHCHH
T ss_pred             CCCCccHHHHHHHHHHHHHH-HHHhHHHHHhcCCCCHHHHHHHHHCCCchhcCchhhCCCCCCHHHHHHHHHHHHhhChH
Confidence            44788999999999999986 888888888899999999999999999999 9999999999999999999999999999


Q ss_pred             chhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCCC
Q 020535          132 CSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTF  211 (325)
Q Consensus       132 ~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~~  211 (325)
                      +++.+..+. ++..+|..+|+++||++|+|   +|+.+.|+++| |         .|+|++++|||+|||+|.||||+..
T Consensus        95 ~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~---~g~~~~a~a~t-p---------~t~A~~~~~g~~lnG~K~~is~a~~  160 (414)
T 2or0_A           95 SGWVTGIVG-VHPWELAFADPQVQEEIWGE---DNDTWMASPYA-P---------MGVATPVDGGYVLKGRWSFSSGTDH  160 (414)
T ss_dssp             HHHHHHHHT-THHHHHTTSCHHHHHHHHSS---CTTCCEECCCS-C---------CEEEEEETTEEEEEEEEEEETTGGG
T ss_pred             HHHHHHHHH-HHHHHHHhCCHHHHHHHHcc---CCCeEEEeccC-C---------CceeEEECCeEEEEeeEeccCCCch
Confidence            887666664 56778889999999999999   79999999988 4         5899999999999999999999999


Q ss_pred             CCEEEEEEEeCC---CC---CeEEEEEeCCCCCeEEe-ccCCccCccccceeeEEEeeeeeCCCCCcCCC----------
Q 020535          212 ADVLVIFARNTT---TN---QINGYLVKKDAPGLTVT-KIENKIGLRIVQNGDILLKKVFVPDEDRLPGV----------  274 (325)
Q Consensus       212 Ad~~~v~a~~~~---~~---~~~~~lv~~~~~Gv~~~-~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~----------  274 (325)
                      ||+++|+++++.   ..   ++++|+||++  ||++. +.|+++|+++++++++.|+||+||.+++|+..          
T Consensus       161 Ad~~~v~a~~~~~~g~~~~~g~~~flV~~~--gv~v~~~~~~~~G~r~~~~~~v~fd~v~VP~~~~lg~~~~~~g~~~g~  238 (414)
T 2or0_A          161 CQWAFLGAMVGDGEGGIATPSSLHVILPRT--DYQIVEDTWDVIGLRGTGSKDLIVDGAFVPGYRTLNAAKVMDGRAQKE  238 (414)
T ss_dssp             CSEEEEEEEECC-----CCCSEEEEEEEGG--GCEEETTCCCBSSCGGGCCEEEEEEEEEEEGGGEEEHHHHHHSHHHHH
T ss_pred             hhEEEEEEEecCCCCCcccceeEEEEEEhh--hcEEecCCCccccCcccCCCcEEEccEEecHHHeeccccccccCCCcc
Confidence            999999999852   22   7899999997  89999 99999999999999999999999999999751          


Q ss_pred             ---CChHHHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccC-CCCCCCC
Q 020535          275 ---NSFQDTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGW-LAPLQII  325 (325)
Q Consensus       275 ---~g~~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~f-G~pl~~~  325 (325)
                         .|+......++..|+  ++.++|     +++++++. ++|+++|+|| |+||+++
T Consensus       239 ~~~~g~~~~~~~~~~~r~~~aa~~lG-----~a~~al~~a~~ya~~R~~f~G~~i~~~  291 (414)
T 2or0_A          239 AGRPEPLFNMPYSCMFPLGITAAVIG-----ITEGALACHIAVQKDRVAITGQKIKED  291 (414)
T ss_dssp             HTCSCSGGGSCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHTTCBCTTSCBGGGC
T ss_pred             ccCCCccccccHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhcCCCCCCCccccC
Confidence               234455556777887  888889     99999999 9999999999 9999874

>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A

Probab=100.00  E-value=1.1e-42  Score=329.98  Aligned_cols=243  Identities=14%  Similarity=0.096  Sum_probs=216.6

Q ss_pred             HHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHh
Q 020535           61 AVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVH  139 (325)
Q Consensus        61 ~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~~~~~~~~  139 (325)
                      ++++.+++|+++ +.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|++++.++++++.+..|
T Consensus        11 ~l~~~~~~~~~~-~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~   89 (394)
T 2rfq_A           11 EVMQRLDALLPT-LRERAQETEDLRRIPDDSMKALQETGFFRLLQPEQWGGYQADPVLFYSAVRKIASACGSTGWVSSII   89 (394)
T ss_dssp             HHHHHHHHHHHH-HHHTHHHHHHHTSCCHHHHHHHHHHTGGGTTSCGGGTCCCCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HHHhHHHHHhcCCCCHHHHHHHHHCCCceecCchhhCCCCCCHHHHHHHHHHHHhhChhHHHHHHHH
Confidence            688999999974 888888888899999999999999999999 999999999999999999999999999988766665


Q ss_pred             hhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCCCCCEEEEEE
Q 020535          140 SSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFA  219 (325)
Q Consensus       140 ~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~~Ad~~~v~a  219 (325)
                      . ++..+|..+|+++||++|+|   +|+.+.|+++| |         .|+|++++|||+|||+|.||||+..||+++|++
T Consensus        90 ~-~~~~~l~~~g~~~q~~~~l~---~g~~~~~~a~t-p---------~t~A~~~~~g~~lnG~K~~is~a~~Ad~~~v~a  155 (394)
T 2rfq_A           90 G-VHNWHLALFSQQAQEDVWGN---DTDVRISSSYA-P---------MGAGQVVDGGYTVNGAWAWSSGCDHASWAVLGG  155 (394)
T ss_dssp             H-HHHHHHTTSCHHHHHHHHSS---CTTCCEEEECS-C---------SEEEEEETTEEEEEEEEEEETTGGGCSEEEEEE
T ss_pred             H-HHHHHHHhCCHHHHHHHhCC---CCCeEEEeccC-C---------CceEEEeCCeEEEeeeEeccCCCcccceEEEee
Confidence            3 56678889999999999999   79989999987 4         589999999999999999999999999999999


Q ss_pred             EeCCCC---CeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCC--------C-----CChHHHHhh
Q 020535          220 RNTTTN---QINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG--------V-----NSFQDTSKV  283 (325)
Q Consensus       220 ~~~~~~---~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~--------~-----~g~~~~~~~  283 (325)
                      ++++++   ++++|+||++  ||++.+.|+++|+++++++++.|+||+||.+++|+.        .     .++......
T Consensus       156 ~~~~~g~~~~~~~flV~~~--gv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~~~g~~~g~~~~~g~~~~~~~  233 (394)
T 2rfq_A          156 PVIKDGRPVDFVSFLIPRE--DYRIDDVWNVVGLRGTGSNTVVVEDVFVPTHRVLSFKAMSNLTAPGLERNTAPVYKMPW  233 (394)
T ss_dssp             EEEETTEEEEEEEEEEEGG--GCEEECCCCBSSCGGGCCEEEEEEEEEEEGGGEEEHHHHHTTCCGGGTTCCCGGGGSCH
T ss_pred             eecCCCCCCceeEEEEEhh--hcEEeCCccccccccCCCCceEEcceEcChHHhcccccccccCCCCcccCCCccccccH
Confidence            983222   6899999997  899999999999999999999999999999999974        1     234455556


Q ss_pred             chhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcc---cCCCCCCCC
Q 020535          284 SEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDS---GWLAPLQII  325 (325)
Q Consensus       284 l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~---~fG~pl~~~  325 (325)
                      ++..|+  ++.++|     +++++++. ++|+++|+   |||+||+++
T Consensus       234 ~~~~r~~~aa~~~G-----~a~~al~~a~~ya~~R~~~~~fG~~i~~~  276 (394)
T 2rfq_A          234 GTIHPTTISAPIVG-----MAYGAYDAHVEHQGKRVRAAFAGEKAKDD  276 (394)
T ss_dssp             HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHSCTTCGGGSC
T ss_pred             HHHHHHHHHHHHHH-----HHHHHHHHHHHHhccCCcCCCCCcccccC
Confidence            677887  888889     99999999 99999999   999999875

>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A*

Probab=100.00  E-value=2e-42  Score=331.18  Aligned_cols=243  Identities=15%  Similarity=0.097  Sum_probs=217.3

Q ss_pred             HHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHh
Q 020535           61 AVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVH  139 (325)
Q Consensus        61 ~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~~~~~~~~  139 (325)
                      ++++.+++|+. .+.|.+.+.|+.+.+|.++|++|.+.||+++ +|++|||.|+++.+.+.++|++++.++++++.+..+
T Consensus        39 ~l~~~~r~~~~-~~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~  117 (422)
T 2jbr_A           39 SMLEKIQQILP-QIAKNAESAEQLRRVPDENIKLLKEIGLHRAFQPKVYGGLEMSLPDFANCIVTLAGACAGTAWAFSLL  117 (422)
T ss_dssp             CHHHHHHHHHH-HHHHTHHHHHHHTSCCHHHHHHHHHTTGGGSSSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-HHHHhhHHHHHcCCCCHHHHHHHHHCCchhcCCchhcCCCCCCHHHHHHHHHHHHhhCcCHHHHHHHH
Confidence            58889999987 5888888888899999999999999999999 999999999999999999999999999988766555


Q ss_pred             hhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCCCCCEEEEEE
Q 020535          140 SSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFA  219 (325)
Q Consensus       140 ~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~~Ad~~~v~a  219 (325)
                       .++..+|..+|+++||++|+|.   |+.+.|+++| |         .|+|++++|||+|||+|.||||+..||+++|++
T Consensus       118 -~~~~~~l~~~g~~~q~~~~l~~---g~~~~a~a~t-p---------~t~A~~~~~g~~lnG~K~~is~a~~Ad~~~v~a  183 (422)
T 2jbr_A          118 -CTHSHQIAMFSKQLQDEIWLKD---PDATASSSIA-P---------FGKVEEVEGGIILNGDYGWSSGCDHAEYAIVGF  183 (422)
T ss_dssp             -HHHHHHHTTSCHHHHHHHHTTC---TTCCEEEECS-C---------CSEEEEETTEEEEEEEEEEETTGGGCSEEEEEE
T ss_pred             -HHHHHHHHhCCHHHHHHHHccC---CCeEEEeecC-C---------CeeEEEeCCEEEEeeeEeeecCCccccEEEEEE
Confidence             3566788899999999999996   8989999987 4         579999999999999999999999999999999


Q ss_pred             EeCC---CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCC---------CCC-----hHHHHh
Q 020535          220 RNTT---TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG---------VNS-----FQDTSK  282 (325)
Q Consensus       220 ~~~~---~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~---------~~g-----~~~~~~  282 (325)
                      ++++   +.++++|+||++  ||++.+.|+++|+++++++++.|+||+||.+++||.         +.|     +.....
T Consensus       184 ~~~~~~g~~g~~~flV~~~--gv~v~~~~~~~G~r~~~~~~v~fddv~VP~~~~lg~~~~~~g~~~g~g~~~~~~~~~~~  261 (422)
T 2jbr_A          184 NRFDADGNKIYSFGVIPRS--DYEIVDNWYAQAIKSSGSKMLKLVNVFIPEYRISKAKDMMEGKSAGFGLYPDSKIFYTP  261 (422)
T ss_dssp             EEECTTSCEEEEEEEEEGG--GCEEECCCCBSSSGGGCCEEEEEEEEEEEGGGEEEHHHHHHTCSTTTTSCTTCSSSSSC
T ss_pred             EecCCCCCceeEEEEEEcC--ceEEeCCccccCcCCCCCCcEEEeeEEecHHHeecccccccCCCCcccccCCCcccccc
Confidence            9853   236899999997  899999999999999999999999999999999975         224     555566


Q ss_pred             hchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcc--cCCCCCCCC
Q 020535          283 VSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDS--GWLAPLQII  325 (325)
Q Consensus       283 ~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~--~fG~pl~~~  325 (325)
                      .++..|+  ++.++|     +++++++. ++|+++|+  |||+||+++
T Consensus       262 ~~~~~r~~~aa~~lG-----~a~~al~~a~~ya~~R~~~~fG~~i~~~  304 (422)
T 2jbr_A          262 YRPYFASGFSAVSLG-----IAERMIEAFKEKQRNRVRAYTGANVGLA  304 (422)
T ss_dssp             HHHHHTTHHHHHHHH-----HHHHHHHHHHHHHTTCBCTTTCCBCTTC
T ss_pred             hHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhcCCCCCCCCccccC
Confidence            6777887  888889     99999999 99999998  999999875

>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A*

Probab=100.00  E-value=1.2e-38  Score=319.77  Aligned_cols=254  Identities=20%  Similarity=0.210  Sum_probs=212.6

Q ss_pred             HHHHHHHHHHHHHHHhhccccHHHHH-HhCCCChhHHHHHHhCcccCCcccCCCCCCccHHHHHHHHHHHHccCCcchhH
Q 020535           57 SEEQAVRMKVRECMEKEIAPIMAEYW-EKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTF  135 (325)
Q Consensus        57 ~~~~~l~~~~~~f~~~~~~~~~~~~d-~~~~~p~~~~~~l~~~Gl~~~~p~~~GG~g~s~~~~~~v~e~la~~~~s~~~~  135 (325)
                      +|++++++.+++|+++.-...  +.. ....+|++.|+.|++.|++..+|++||   .+..+...+.++++   .+++  
T Consensus        29 ~e~~~lr~~vr~~l~~~~~~~--~~~~~~~~~~~~~~~~l~~~g~l~~~p~e~G---~~~~~~~~v~e~~~---~~~~--   98 (659)
T 1w07_A           29 RHAFEVSDRIARLVASDPVFE--KSNRARLSRKELFKSTLRKCAHAFKRIIELR---LNEEEAGRLRHFID---QPAY--   98 (659)
T ss_dssp             HHHHHHHHHHHHHHHTCGGGC--CTTTTSSCHHHHHHHHHHHHHHHHHHHHHTT---CCHHHHHHHHHHHC---CCCH--
T ss_pred             hHHHHHHHHHHHHHhcCcccc--cCCccCCChHHHHHHHHHHHHHHHHhHHHhC---CCchHHHHHHHHhc---cchh--
Confidence            789999999999998763221  111 123567899999999888877888887   35567666666653   3444  


Q ss_pred             HHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEe--CCEEEEE-----eEeecccC
Q 020535          136 ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE-----GQKRWIGN  208 (325)
Q Consensus       136 ~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~--~~g~~ln-----G~K~~it~  208 (325)
                      +.+|..++...|..+|+++||++|||++++|+.++|+|+|||++|||+..++|+|+++  +|||+||     |+|.||+|
T Consensus        99 ~~~~~~l~~~~l~~~Gt~eqk~~~L~~i~~Ge~~~~~a~TEp~~GSd~~~l~TtA~~d~~~~g~vLntP~~~G~K~~is~  178 (659)
T 1w07_A           99 VDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQTASKWWPGG  178 (659)
T ss_dssp             HHHHHHTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCSGGGSEECCTT
T ss_pred             hhhHHhHHHHHHHHcCCHHHHHHHhhHHhcCCEEEEEEecCCCCCCCcccceeEEEEcCCCCEEEEcCCCCCeEEEeecC
Confidence            4566556677888999999999999999999999999999999999999999999999  6889999     99999999


Q ss_pred             -CCCCCEEEEEEEeCCC---CCeEEEEEeC-C------CCCeEEeccCCccC---ccccceeeEEEeeeeeCCCCCcCC-
Q 020535          209 -STFADVLVIFARNTTT---NQINGYLVKK-D------APGLTVTKIENKIG---LRIVQNGDILLKKVFVPDEDRLPG-  273 (325)
Q Consensus       209 -~~~Ad~~~v~a~~~~~---~~~~~~lv~~-~------~~Gv~~~~~~~~~G---~~~~~~~~v~f~~v~Vp~~~~lg~-  273 (325)
                       +..||+++|+||++.+   .|+++|+||. +      .|||++.+.|+++|   +++++++.+.|+||+||.+++||. 
T Consensus       179 ~a~~Ad~~lV~Ar~~~~~~~~G~~~flVp~r~~~~~~~~pGV~v~~~~~~~G~~~~~g~~~~~v~fd~VrVP~~~lLg~~  258 (659)
T 1w07_A          179 LGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQMLMRL  258 (659)
T ss_dssp             TTTTCSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECCCBSSSSGGGGSCCEEEEESSEEEEGGGBCCSS
T ss_pred             CCCCCCEEEEEEEECCCCCCCCeEEEEEEccccCCCCCCCCeEEecCccCccccccCCCCceEEEeccEEECHHHhcCCc
Confidence             8999999999998532   3689999994 5      69999999999999   999999999999999999999985 


Q ss_pred             ------CCCh------HHHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCC-------CCCCC
Q 020535          274 ------VNSF------QDTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLA-------PLQII  325 (325)
Q Consensus       274 ------~~g~------~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~-------pl~~~  325 (325)
                            +.++      ......+..+|+  ++.++|     +++++++. ++|+++|+|||+       ||+++
T Consensus       259 ~~v~~~g~~~~~~~~~~~~~~~l~~~R~~~aa~~~G-----~a~~al~~a~~ya~~R~qfg~~~~~~e~pi~~~  327 (659)
T 1w07_A          259 SKVTREGEYVPSDVPKQLVYGTMVYVRQTIVADASN-----ALSRAVCIATRYSAVRRQFGAHNGGIETQVIDY  327 (659)
T ss_dssp             EEECTTCCEEECSSCGGGCTTTTTHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCBCSCC---CCCCBGGGS
T ss_pred             CccCCCCceecCCccHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhcCcccCCCCCCcccchhcc
Confidence                  2233      345677788888  788889     99999999 999999999998       77763

>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A*

Probab=100.00  E-value=1.8e-36  Score=297.10  Aligned_cols=221  Identities=15%  Similarity=0.095  Sum_probs=189.4

Q ss_pred             ChhHHHHHHhCcccCC-c--ccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhh
Q 020535           88 PFHVIPKLGALRVAGG-T--IKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLA  164 (325)
Q Consensus        88 p~~~~~~l~~~Gl~~~-~--p~~~GG~g~s~~~~~~v~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~  164 (325)
                      ..++++.+.+.||+++ .  |++|||.+.......    .++..+....+...++. .+...|..+| ++||++|+|+++
T Consensus        88 ~~~~~~~l~e~Gl~~l~~~~p~~~Gg~~~~~~~~~----~~~~~~~~~~~p~~~t~-~~~~~L~~~g-~eqk~~~lp~l~  161 (541)
T 3djl_A           88 WHLLMQALCTNRVHNLAWEEDARSGAFVARAARFM----LHAQVEAGSLCPITMTF-AATPLLLQML-PAPFQDWTTPLL  161 (541)
T ss_dssp             HHHHHHHHHHTTTTTGGGSTTCCTTHHHHHHHHHH----HHHHHCSTTHHHHHHHH-HHHHHHHHHC-CGGGGGGHHHHT
T ss_pred             HHHHHHHHHhCCcccCCCCCCCCCCcHHHHHHHHH----HHHHHHHhhhcHHHHHH-HHHHHHHHcC-HHHHHHHHHHHh
Confidence            3678999999999999 8  699996444433332    23333333333333443 3456788889 999999999999


Q ss_pred             cCCc-------------eeEEEecCCCCCCCCCCCceEEEEe-CCEEEEEeEeecccCCCCCCEEEEEEEeCCCCCeEEE
Q 020535          165 QLNT-------------IACWALTEPAYGSDASALNTTATKV-EGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGY  230 (325)
Q Consensus       165 ~g~~-------------~~~~a~tEp~~Gsd~~~~~~~a~~~-~~g~~lnG~K~~it~~~~Ad~~~v~a~~~~~~~~~~~  230 (325)
                      +|+.             +.|+++|||++|||+..++|+|+++ +|+|+|||+|+|+| +..||+++|+||++  +++++|
T Consensus       162 sge~~p~~~~~~~~~g~~~~~a~TEp~~GSDl~~~~T~A~~~~~g~y~LnG~K~f~S-a~~Ad~~lVlArt~--~Gis~f  238 (541)
T 3djl_A          162 SDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHKWFFS-VPQSDAHLVLAQTA--GGLSCF  238 (541)
T ss_dssp             CSCCCCCSSCGGGSSSCCEEEECCBTTBSSCGGGCCCEEEECTTSCEEEEEEEEEEE-CTTSSEEEEEEEET--TEEEEE
T ss_pred             CCCcccccccccccccceeEEEeccCCcCCCcccceeEEEEcCCCeEEEEEEEEeec-ccccCEEEEEEEEC--CceEEE
Confidence            9998             7899999999999999999999999 78899999999999 89999999999996  589999


Q ss_pred             EEeCCCC-----CeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC-CChHHHHhhchhhhH--HHhhcccCcHHHH
Q 020535          231 LVKKDAP-----GLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVSEGEET--VWSTISSFSDQPA  302 (325)
Q Consensus       231 lv~~~~~-----Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~g~~~~~~~l~~~r~--aa~~~G~~~~~~a  302 (325)
                      +||++.|     ||++.+.|+++|+++++++++.|+||+   +++||.. .|+..+...++..|+  ++.++|     ++
T Consensus       239 lVp~~~p~~~~~Gv~i~~~~~~~G~rgt~s~~v~fddv~---~~llG~~g~G~~~~~~~l~~~Rl~~aa~~~G-----~a  310 (541)
T 3djl_A          239 FVPRFLPDGQRNAIRLERLKDKLGNRSNASCEVEFQDAI---GWLLGLEGEGIRLILKMGGMTRFDCALGSHA-----MM  310 (541)
T ss_dssp             EEESBCTTSCBCSEEEEEECCCSSCTTSCEEEEEEEEEE---EEEESSTTCHHHHTHHHHHHHHHHHHHHHHH-----HH
T ss_pred             EEecCCCCCCcCCeEEeeccccCCCcCCceeEEEEccce---eeeeecCCchHHHHHHHHHHHHHHHHHHHHH-----HH
Confidence            9999988     999999999999999999999999996   7899875 489999999999998  778888     99


Q ss_pred             HHHHHH-hhhhhhcccCCCCCCCC
Q 020535          303 ETCSDA-GKYSSHDSGWLAPLQII  325 (325)
Q Consensus       303 ~~al~~-~~ya~~R~~fG~pl~~~  325 (325)
                      +++++. ++|+++|++||+||+++
T Consensus       311 ~~al~~a~~ya~~R~~fG~~i~~~  334 (541)
T 3djl_A          311 RRAFSLAIYHAHQRHVFGNPLIQQ  334 (541)
T ss_dssp             HHHHHHHHHHHHHCEETTEEGGGS
T ss_pred             HHHHHHHHHHHhhCccCCCchhhC
Confidence            999999 99999999999999864

>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*

Probab=100.00  E-value=2.2e-34  Score=288.67  Aligned_cols=251  Identities=17%  Similarity=0.217  Sum_probs=191.3

Q ss_pred             CHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCh-h-------HHHHHHhCcccCCcccCCCCCCccHHHHHHHHHHHHc
Q 020535           56 TSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPF-H-------VIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIAR  127 (325)
Q Consensus        56 ~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~-~-------~~~~l~~~Gl~~~~p~~~GG~g~s~~~~~~v~e~la~  127 (325)
                      +++..++++++++|+.+.  |..... ....+.. +       ..+.|.+.      .++|||.+  .... .+.+++..
T Consensus        26 ~~~~~~~r~~~~~~l~~~--p~~~~~-~~~~~~~~e~~~~~~~~~~~l~~~------~~~~~~~~--~~~~-~~~~~~~~   93 (661)
T 2ddh_A           26 SPENTRRRREIENLILND--PDFQHE-DYNFLTRSQRYEVAVKKSATMVKK------MREYGISD--PEEI-MWFKNSVH   93 (661)
T ss_dssp             SHHHHHHHHHHHHHHHTC--GGGCCS-CGGGSCHHHHHHHHHHHHHHHHHH------HHHTTCCC--HHHH-HHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHhcC--cccccC-CcCCCCHHHHHHHHHHHHHHHHHH------HHHcCCCC--chHH-HHHHHHhc
Confidence            366778889999988764  321100 0001111 1       11222222      26677765  2333 33667765


Q ss_pred             cCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEe--CCEEEEE-----
Q 020535          128 VDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE-----  200 (325)
Q Consensus       128 ~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~--~~g~~ln-----  200 (325)
                      .+.+..  +.+|..++...|..+|+++|+++|||++++|+.++|+|+|||++|||+..++|+|+++  +|||+||     
T Consensus        94 ~~~~~~--~~~h~~l~~~~i~~~Gt~eq~~~~L~~i~~Ge~~g~~a~TE~g~GSd~~~l~TtA~~d~~~~~~vLntP~~~  171 (661)
T 2ddh_A           94 RGHPEP--LDLHLGMFLPTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVT  171 (661)
T ss_dssp             TTCCCT--THHHHHTHHHHHC-CCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCSST
T ss_pred             cchhhH--HHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEeeccCCcCcCcccceeEEEEcCCCCeEEEcCCCCC
Confidence            443333  4466556778899999999999999999999999999999999999999999999999  7889999     


Q ss_pred             eEeecccC-CCCCCEEEEEEEeCC---CCCeEEEEEe-CC------CCCeEEeccCCccCccccceeeEEEeeeeeCCCC
Q 020535          201 GQKRWIGN-STFADVLVIFARNTT---TNQINGYLVK-KD------APGLTVTKIENKIGLRIVQNGDILLKKVFVPDED  269 (325)
Q Consensus       201 G~K~~it~-~~~Ad~~~v~a~~~~---~~~~~~~lv~-~~------~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~  269 (325)
                      |+|.||+| +..||+++|+|+++.   +.|+++|+|| ++      .|||++.+.|+++|+++++++.+.|+||+||.++
T Consensus       172 G~K~wis~~a~~Ad~~vV~Ar~~~~~~~~G~~~FlVp~rd~~~~~~~pGV~v~~~~~k~Gl~g~~~~~v~Fd~VrVP~~~  251 (661)
T 2ddh_A          172 SIKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGITVGDIGPKFGYEEMDNGYLKMDNYRIPREN  251 (661)
T ss_dssp             TSEECCTTTTTTCSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECCCCSSCTTCCCEEEEESSEEEEGGG
T ss_pred             eEEEecCCCcccCCEEEEEEEEccCCCCCceEEEEEecccccCCCCCCCeEEecCcccccCCCCcceEEEeccEEECHHH
Confidence            99999999 789999999999852   2378999999 44      7999999999999999999999999999999999


Q ss_pred             CcCCC-----CC-------hHHHHhhchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhhcccCCC-------CCCCC
Q 020535          270 RLPGV-----NS-------FQDTSKVSEGEET--VWSTISSFSDQPAETCSDA-GKYSSHDSGWLA-------PLQII  325 (325)
Q Consensus       270 ~lg~~-----~g-------~~~~~~~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~R~~fG~-------pl~~~  325 (325)
                      +||..     +|       +......+..+|+  ++.++|     +++++++. ++|+++|+|||+       ||+++
T Consensus       252 lLg~~~~v~~~G~~~~~~~~~~~~~~l~~~R~~iaa~~~G-----~a~~al~~a~~ya~~R~qfg~~~~~~e~~i~~~  324 (661)
T 2ddh_A          252 MLMKYAQVKPDGTYVKPLSNKLTYGTMVFVRSFLVGNAAQ-----SLSKACTIAIRYSAVRRQSEIKQSEPEPQILDF  324 (661)
T ss_dssp             BCCSSCEECTTCCEECCC--------CHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCBCSCSSTTSCCCBGGGS
T ss_pred             hcCcccccCCCCceeccchHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhCcccCCCCCCcccccccc
Confidence            99872     34       5677778888998  788889     99999999 999999999998       77653

>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1

Probab=99.94  E-value=3.4e-26  Score=221.78  Aligned_cols=144  Identities=17%  Similarity=0.210  Sum_probs=119.8

Q ss_pred             HHHHhcCC--HHHHHhhchhhhcCCceeEEEecCCCCC--------CCC-CCCceEEEEeCCEEEEEeEeecccCCCCCC
Q 020535          145 LTIALCGS--EEQKQKYLPSLAQLNTIACWALTEPAYG--------SDA-SALNTTATKVEGGWILEGQKRWIGNSTFAD  213 (325)
Q Consensus       145 ~~l~~~g~--~~q~~~~l~~l~~g~~~~~~a~tEp~~G--------sd~-~~~~~~a~~~~~g~~lnG~K~~it~~~~Ad  213 (325)
                      .++..+|+  ++||++|||++++|+++.|+|+|||.+|        ||+ ..++ ++++++|||+|||+|.|+||++.||
T Consensus       118 ~~~~~~Gt~~~eqk~~~L~~l~~Ge~~~a~a~TEP~~~rs~~~~~gSD~~~~~~-~a~r~gdg~vlnG~K~~iT~a~~Ad  196 (490)
T 1u8v_A          118 EIDQKYGTNYHKNFTEYLKYIQENDLIVDGAMTDPKGDRGLAPSAQKDPDLFLR-IVEKREDGIVVRGAKAHQTGSINSH  196 (490)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHTCCEEEECCCCCSCTTSCGGGCSSTTSSCE-EEEECSSEEEEEEEECSCTTCTTCS
T ss_pred             hHHHHhCCCHHHHHHHHHHHHHhCCceeeeeeeCCCCCCcccccccCCcccceE-EEEEECCEEEEEeEEEEeeCCcccC
Confidence            35568999  9999999999999999999999999874        775 3444 8899999999999999999999999


Q ss_pred             EEEEEEEeCC----CCCeEEEEEeCCCCCeEEe---ccCCc----------cCc-cc-cceeeEEEeeeeeCCCCCc--C
Q 020535          214 VLVIFARNTT----TNQINGYLVKKDAPGLTVT---KIENK----------IGL-RI-VQNGDILLKKVFVPDEDRL--P  272 (325)
Q Consensus       214 ~~~v~a~~~~----~~~~~~~lv~~~~~Gv~~~---~~~~~----------~G~-~~-~~~~~v~f~~v~Vp~~~~l--g  272 (325)
                      +++|+++++.    .+++++|+||+++|||++.   +.+++          +|+ |. .++++|.|+||+||.+++|  |
T Consensus       197 ~~iV~art~~~~~~~~~~s~flVp~d~pGv~v~~~r~~~~~~~~~~~~d~~lg~~r~~~~~~~v~FddV~VP~e~vl~~g  276 (490)
T 1u8v_A          197 EHIIMPTIAMTEADKDYAVSFACPSDADGLFMIYGRQSCDTRKMEEGADIDLGNKQFGGQEALVVFDNVFIPNDRIFLCQ  276 (490)
T ss_dssp             EEEECCSSCCCGGGGGGCEEEEEETTCTTEEEEECCCTTGGGGGSTTCCGGGSSSSCCCCCEEEEEEEEEEEGGGEEEES
T ss_pred             EEEEEEecCCCCCCCCeEEEEEEECCCCCEEEEecccccccccccccccCCccccccCCceEEEEECceEeCHHHccCCC
Confidence            9999999741    2358999999999999994   44544          666 63 5778899999999999998  4


Q ss_pred             CC-CChHHHHhhchhhhH
Q 020535          273 GV-NSFQDTSKVSEGEET  289 (325)
Q Consensus       273 ~~-~g~~~~~~~l~~~r~  289 (325)
                      .. .++......+.+.|+
T Consensus       277 ~~~~g~~~~~~~~~~~r~  294 (490)
T 1u8v_A          277 EYDFAGMMVERFAGYHRQ  294 (490)
T ss_dssp             CGGGHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHH
Confidence            43 366666677777776

>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A*

Probab=99.93  E-value=4.6e-26  Score=220.44  Aligned_cols=156  Identities=17%  Similarity=0.198  Sum_probs=127.0

Q ss_pred             CHHHHHhhchhhhcCCceeEEEecCCCCC--------CCCCCCceEEE-EeCCEEEEEeEeecccCCCCCCEEEEEEEeC
Q 020535          152 SEEQKQKYLPSLAQLNTIACWALTEPAYG--------SDASALNTTAT-KVEGGWILEGQKRWIGNSTFADVLVIFARNT  222 (325)
Q Consensus       152 ~~~q~~~~l~~l~~g~~~~~~a~tEp~~G--------sd~~~~~~~a~-~~~~g~~lnG~K~~it~~~~Ad~~~v~a~~~  222 (325)
                      .++||++|||++++|+++.|+|+|||++|        ||+. +.++++ +++|||+|||+|.|||| +.||+++|+++++
T Consensus       122 ~~eqk~~~L~~l~~Ge~~~a~a~TEP~~grs~~~s~gsd~~-~~~~~~~~~gdg~VlnG~K~~iT~-~~Ad~~iV~art~  199 (481)
T 2yyk_A          122 FAENVRNYYRYLRDQDLATTHALTNPQVNRARPPSGQPDPY-IPVGVVKQTEKGIVVRGARMTATF-PLADEVLIFPSIL  199 (481)
T ss_dssp             GHHHHHHHHHHHHHHTCCEEEEECCCCCCTTC----CCCSC-SBCEEEEECSSEEEEEEEEEEEEC-CCSSEEEECCCSC
T ss_pred             HHHHHHHHHHHHHcCCeEEEEeeECCCCCCCCCccccCCcc-cceEEEEEECCEEEEEeEEEEecc-ccccEEEEEEecC
Confidence            47999999999999999999999999976        6775 667765 68999999999999999 9999999999985


Q ss_pred             C----CCCeEEEEEeCCCCCeEEe--ccCCc--------cCccc-cceeeEEEeeeeeCCCCCc--CCCC-ChHHH--Hh
Q 020535          223 T----TNQINGYLVKKDAPGLTVT--KIENK--------IGLRI-VQNGDILLKKVFVPDEDRL--PGVN-SFQDT--SK  282 (325)
Q Consensus       223 ~----~~~~~~~lv~~~~~Gv~~~--~~~~~--------~G~~~-~~~~~v~f~~v~Vp~~~~l--g~~~-g~~~~--~~  282 (325)
                      .    .+++++|+||+++|||++.  +.+..        +|.+. .++++|.||||+||.+++|  |..+ ++...  ..
T Consensus       200 ~~~~~~~~~s~flVp~dtpGv~v~~r~~~~~~~s~~d~~lg~r~~~~~~~v~FddV~VP~e~vl~~G~~~~g~~~~~~~~  279 (481)
T 2yyk_A          200 LQAGSEKYALAFALPTSTPGLHFVCREALVGGDSPFDHPLSSRVEEMDCLVIFDDVLVPWERVFILGNVELCNNAYGATG  279 (481)
T ss_dssp             CCTTCGGGCEEEEEETTCTTEEEEECCCCCCCSCTTTCTTTTTCCCCEEEEEEEEEEEEGGGEEEESCHHHHHHHHHHHT
T ss_pred             CCCCCCCeEEEEEEECCCCCEEEEeccccccCCccccccccccCCCCeEEEEEccEEECHHHccCCCCccHHHHHHHHhh
Confidence            2    2358999999999999994  33332        56664 6788999999999999998  4432 34433  56


Q ss_pred             hchhhhH--HHhhcccCcHHHHHHHHHH-hhhhhh
Q 020535          283 VSEGEET--VWSTISSFSDQPAETCSDA-GKYSSH  314 (325)
Q Consensus       283 ~l~~~r~--aa~~~G~~~~~~a~~al~~-~~ya~~  314 (325)
                      .++..|+  ++..+|     .++.++.. ..++..
T Consensus       280 ~l~~~r~~~~~~~~g-----~a~~~lg~a~~~~~~  309 (481)
T 2yyk_A          280 ALNHMAHQVVALKTA-----KTEAFLGVAALMAEG  309 (481)
T ss_dssp             HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHH-----HHHHHHHHHHHHHHh
Confidence            7788888  667778     88888888 777653

>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia}

Probab=99.89  E-value=5.3e-23  Score=199.36  Aligned_cols=136  Identities=17%  Similarity=0.204  Sum_probs=108.8

Q ss_pred             cCC--HHHHHhhchhhhcCCceeEEEecCCCC--------CCCCCCCceEEEEeCCEEEEEeEeecccCCCCCCEEEEEE
Q 020535          150 CGS--EEQKQKYLPSLAQLNTIACWALTEPAY--------GSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFA  219 (325)
Q Consensus       150 ~g~--~~q~~~~l~~l~~g~~~~~~a~tEp~~--------Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~~Ad~~~v~a  219 (325)
                      +|+  .+|+++|||.+++|+++.|+|+|||.+        |||+ .++++ .+++|||+|||+|.||||+..||+++|++
T Consensus       127 ~~~~~~eq~~~~L~~l~~Ge~~~a~AltEP~~~rs~~~~~GSD~-~~~~~-~~~gdg~VlnG~K~~iT~a~~Ad~~lV~a  204 (515)
T 3hwc_A          127 EGRNLTQNIHNFLKLLREKDLNCPLNFVDPQTDRSSDAAQARSP-NLRIV-EKTDDGIIVNGVKAVGTGIAFGDYMHIGC  204 (515)
T ss_dssp             TTCCHHHHHHHHHHHHHHTTCCCCEECCCCCCCCCSCTTTSCCS-BCEEE-EECSSEEEEEEEEEEEESGGGCSEEEECC
T ss_pred             cCCCHHHHHHHHHHHHHcCCcEEEEEeeCCCCCcccccccCCCc-ceEEE-EEECCEEEEEEEEEEECCccccCEEEEEE
Confidence            554  578999999999999999999999986        5788 55443 45688999999999999999999999999


Q ss_pred             Ee-CCC--CCeEEEEEeCCCCCeEEeccCCccCc-----cc-----cceeeEEEeeeeeCCCCCc--CCCC-ChHHHHhh
Q 020535          220 RN-TTT--NQINGYLVKKDAPGLTVTKIENKIGL-----RI-----VQNGDILLKKVFVPDEDRL--PGVN-SFQDTSKV  283 (325)
Q Consensus       220 ~~-~~~--~~~~~~lv~~~~~Gv~~~~~~~~~G~-----~~-----~~~~~v~f~~v~Vp~~~~l--g~~~-g~~~~~~~  283 (325)
                      ++ ++.  .++++|+||+++|||++...+..+|.     +.     ..++.|.|+||+||.+++|  |..+ |+..+...
T Consensus       205 ~t~~~~~~~~~s~FlVp~d~pGv~v~~~~~~~G~~~~d~~ls~~~~~~~a~v~FddV~VP~e~vl~~Ge~g~g~~~~~~~  284 (515)
T 3hwc_A          205 LYRPGIPGEQVIFAAIPTNTPGVTVFCRESTVKNDPAEHPLASQGDELDSTTVFDNVFIPWEQVFHIGNPEHAKLYPQRI  284 (515)
T ss_dssp             CCCTTCCGGGCEEEEEETTCTTEEEEECCCCCCSCTTTCTTTTSCCCCEEEEEEEEEEEEGGGEEEESCTTGGGTHHHHH
T ss_pred             EecCCCCCCeEEEEEEECCCCCeEEeecccccCccccccccccccCCceEEEEECceEECHHHccCCCCccHHHHHHHHH
Confidence            98 321  23899999999999999877766662     22     2378999999999999999  6543 66665444


Q ss_pred             chhh
Q 020535          284 SEGE  287 (325)
Q Consensus       284 l~~~  287 (325)
                      +...
T Consensus       285 ~~~~  288 (515)
T 3hwc_A          285 FDWV  288 (515)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>4g5e_A 2,4,6-trichlorophenol 4-monooxygenase; oxidoreductase; 2.50A {Cupriavidus necator JMP134}

Probab=99.66  E-value=3.8e-16  Score=151.51  Aligned_cols=155  Identities=14%  Similarity=0.089  Sum_probs=113.0

Q ss_pred             HHHHhhchhhhcCCceeEEEecCCCCC-----CCCCCCce-EEEEeCCEEEEEeEeecccCCCCCCEEEEEEEeCC---C
Q 020535          154 EQKQKYLPSLAQLNTIACWALTEPAYG-----SDASALNT-TATKVEGGWILEGQKRWIGNSTFADVLVIFARNTT---T  224 (325)
Q Consensus       154 ~q~~~~l~~l~~g~~~~~~a~tEp~~G-----sd~~~~~~-~a~~~~~g~~lnG~K~~it~~~~Ad~~~v~a~~~~---~  224 (325)
                      +...+|+..+.++++..+.++|+|...     +....+.. ..+++++||+|||.|.|+||++.||+++|+++++.   .
T Consensus       134 ~n~~~y~~~~~~~DL~~~~a~~dPk~dRs~~~~~q~d~~l~Vve~~~dGiVVnGaK~~~T~a~~Ad~i~V~a~t~~~~~~  213 (517)
T 4g5e_A          134 KNIVDFVNFAKKHDLNCAPQFVDPQMDRSNPDAQQRSPGLRVIEKNDKGIVVSGVKAIGTGVAFADWIHIGVFFRPGIPG  213 (517)
T ss_dssp             HHHHHHHHHHHHHTCCEEEECCCCCC-----------CBCEEEEECSSEEEEEEEEEEEESGGGCSEEEECCCCCTTCCG
T ss_pred             HHHHHHHHHHHhcCceeeeeeeCCCCCCCCCchhcCCCceEEEEEcCCeEEEeeEehhhcCccccCEEEEEeecCCCCCc
Confidence            456789999999999999999999631     11111222 34567899999999999999999999999998853   2


Q ss_pred             CCeEEEEEeCCCCCeEEeccCCccCc---------ccc-ceeeEEEeeeeeCCCCCc--CCCC-ChHHHHhhchhhhH--
Q 020535          225 NQINGYLVKKDAPGLTVTKIENKIGL---------RIV-QNGDILLKKVFVPDEDRL--PGVN-SFQDTSKVSEGEET--  289 (325)
Q Consensus       225 ~~~~~~lv~~~~~Gv~~~~~~~~~G~---------~~~-~~~~v~f~~v~Vp~~~~l--g~~~-g~~~~~~~l~~~r~--  289 (325)
                      +++++|+||.++|||++.......+.         ++. ..+.+.||||+||.++++  |..+ +.......++..|.  
T Consensus       214 d~~~~F~VP~dtPGv~~i~r~~~~~~~~~d~pl~~r~~e~da~vvFDdV~VP~e~Vf~~Ge~~~~~~~~~~~~~~~~~~~  293 (517)
T 4g5e_A          214 DQIIFAATPVNTPGVTIVCRESVVKEDPIEHPLASQGDELDGMTVFDNVFIPWSHVFHLGNPEHAKLYPQRVFDWLHYHA  293 (517)
T ss_dssp             GGCEEEEEETTCTTEEEEECCCCCCSCTTTCTTGGGCCCCEEEEEEEEEEEEGGGEEEESCTTHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEEecCCCCeEEEecccccCCCccccccccccCCcceEEEecceeccHHHccccCChhHHHHHHHHHHHHHHHHH
Confidence            45789999999999998544443333         222 247799999999999987  5544 55666677777776  


Q ss_pred             HHhhcccCcHHHHHHHHHH-hhhhh
Q 020535          290 VWSTISSFSDQPAETCSDA-GKYSS  313 (325)
Q Consensus       290 aa~~~G~~~~~~a~~al~~-~~ya~  313 (325)
                      ++..++     .++.++.. ..+++
T Consensus       294 ~~~~~~-----~~~~~~g~a~~~ae  313 (517)
T 4g5e_A          294 LIRQSV-----RAELMAGLAILITE  313 (517)
T ss_dssp             HHHHHH-----HHHHHHHHHHHHHH
T ss_pred             HHHHHH-----HHHHHHHHHHHHHH
Confidence            445555     66666666 66654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	325
d1ivha2	236	e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM	2e-46
d1ukwa2	227	e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydroge	2e-40
d1rx0a2	231	e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {H	3e-40
d3mdea2	231	e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydroge	3e-39
d1siqa2	236	e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH	7e-39
d2d29a2	233	e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus	1e-38
d1jqia2	231	e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM do	2e-36
d1buca2	232	e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM do	1e-30
d1w07a3	271	e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domai	5e-21
d2ddha3	267	e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II,	1e-20
d1r2ja2	210	e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygro	4e-17
d1u8va2	275	e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase	2e-15
d2c12a2	259	e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium ox	1e-14

>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]} Length = 236

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isovaleryl-coa dehydrogenase, NM domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  154 bits (391), Expect = 2e-46
 Identities = 65/235 (27%), Positives = 109/235 (46%), Gaps = 11/235 (4%)

Query: 52  DDL---LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFH--VIPKLGALRVAGGTIK 106
           DD    L+ E++ +R  + + +++ +AP   E     EF        +LG L V G T  
Sbjct: 2   DDAINGLSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAP 61

Query: 107 GYGCP-GHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQ 165
                 G       + + EI+R   +       HS+L +  +   G+E QK+KYLP L  
Sbjct: 62  VQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLIS 121

Query: 166 LNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT--- 222
              I   A++EP  GSD  ++   A K    +IL G K WI N   ADVL+++A+     
Sbjct: 122 GEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLAA 181

Query: 223 --TTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVN 275
              +  I  ++V+K  PG + +K  +K+G+R     +++ +   +P  + L   N
Sbjct: 182 VPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHEN 236

>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]} Length = 227

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Thermus thermophilus [TaxId: 274]

 Score =  139 bits (349), Expect = 2e-40
 Identities = 67/220 (30%), Positives = 107/220 (48%), Gaps = 3/220 (1%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHS 114
           LT E++ ++   R   ++ I P+  EY EK E P+ VI KL  + +    I         
Sbjct: 5   LTEEQRQLQALARRFAKEVILPVAQEYDEKEEVPWPVIEKLHEVGLLNAIIPEEYGGMGL 64

Query: 115 VTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWAL 174
                + + E           I + S L +  + L G+EEQK+++L  L +   +A +AL
Sbjct: 65  KMLDEVIVGEELAYACMGIYTIPMASDLGITPVLLAGTEEQKERFLRPLTEKPALAAFAL 124

Query: 175 TEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGY---L 231
           +EP  GSDA+AL T A +    ++L G K WI N   A+ +V+FA      +  G    +
Sbjct: 125 SEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNGGEAEWVVVFATVNPELRHKGVVALV 184

Query: 232 VKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           V++  PG    KI  K+G R     +++ + V VP E+RL
Sbjct: 185 VERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRL 224

>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 231

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isobutyryl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  138 bits (349), Expect = 3e-40
 Identities = 61/219 (27%), Positives = 100/219 (45%), Gaps = 2/219 (0%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHS 114
           L  E++  +    +   +E+AP MAE+ +K  FP  V+ K   L   G  I+        
Sbjct: 10  LNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYIQTDVGGSGL 69

Query: 115 VTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWAL 174
                  I E      + +T  +   ++    I   G+EEQ+ K+ P L  +   A + L
Sbjct: 70  SRLDTSVIFEALATGCTSTTAYISIHNMCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCL 129

Query: 175 TEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTT--TNQINGYLV 232
           TEP  GSDA++L T+A K    +IL G K +I  +  +D+ V+  R        I+  +V
Sbjct: 130 TEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAGESDIYVVMCRTGGPGPKGISCIVV 189

Query: 233 KKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           +K  PGL+  K E K+G        ++ +   VP  +R+
Sbjct: 190 EKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRI 228

>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]} Length = 231

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  136 bits (342), Expect = 3e-39
 Identities = 53/225 (23%), Positives = 99/225 (44%), Gaps = 6/225 (2%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHS 114
           LT +++  +   R+   +EI P+ AEY    E+P  ++ +   L +    I         
Sbjct: 6   LTEQQKEFQATARKFAREEIIPVAAEYDRTGEYPVPLLKRAWELGLMNTHIPESFGGLGL 65

Query: 115 VTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWAL 174
               +  I E      +     +  ++L  + + + G+ +Q++KYL  + +   +  + +
Sbjct: 66  GIIDSCLITEELAYGCTGVQTAIEANTLGQVPLIIGGNYQQQKKYLGRMTEEPLMCAYCV 125

Query: 175 TEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADV------LVIFARNTTTNQIN 228
           TEP  GSD + + T A K    +I+ GQK WI N   A+            +   +    
Sbjct: 126 TEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPASKAFT 185

Query: 229 GYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG 273
           G++V+ D PG+ + + E  +G R      I+ + V VP E+ L G
Sbjct: 186 GFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTG 230

>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Length = 236

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Glutaryl-CoA dehydrogenase GCDH
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  135 bits (340), Expect = 7e-39
 Identities = 85/233 (36%), Positives = 123/233 (52%), Gaps = 3/233 (1%)

Query: 46  SDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI 105
            D    ++ LT++E  +R   R   ++ + P +        F   +I ++G L V G TI
Sbjct: 5   QDPLVLEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTI 64

Query: 106 KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQ 165
           KGYGC G S     +   E+ RVD+   + + V SSL M  I   GSEEQ+QKYLP LA+
Sbjct: 65  KGYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAK 124

Query: 166 LNTIACWALTEPAYGSDASALNTTA--TKVEGGWILEGQKRWIGNSTFADVLVIFARNTT 223
              + C+ LTEP  GSD S++ T A        + L G K WI NS  AD+ V++     
Sbjct: 125 GELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVW-ARCE 183

Query: 224 TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNS 276
              I G+L++K   GL+  +I+ K  LR    G I++  V VP+E+ LPG +S
Sbjct: 184 DGCIRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASS 236

>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 233

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Acyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score =  134 bits (338), Expect = 1e-38
 Identities = 73/225 (32%), Positives = 103/225 (45%), Gaps = 8/225 (3%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHS 114
             +EE+ V    RE ++ E+AP  AE      FP+ ++ KL    V G  +         
Sbjct: 6   EGAEERQVLGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEFGVFGALVPEAYGGAGL 65

Query: 115 VTGAAIAIAEIARVDASCSTFI-LVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
            T     + E               H+SLA   I L GSE QK+ +LP LA    +  W 
Sbjct: 66  STRLFARMVEAIAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWG 125

Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVI-------FARNTTTNQ 226
           LTEP  GSDA+AL T A KVEGGW L G K++I   + A V V+        +       
Sbjct: 126 LTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQGSVAGVYVVMARTDPPPSPERKHQG 185

Query: 227 INGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           I+ +   +   GL V + E K+GL       ++L+ +FVP+E  L
Sbjct: 186 ISAFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALL 230

>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 231

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Butyryl-CoA dehydrogenase, NM domains
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  128 bits (322), Expect = 2e-36
 Identities = 74/221 (33%), Positives = 114/221 (51%), Gaps = 4/221 (1%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKG-YGCPGH 113
           L    Q +R   R+  EKE+ PI A+  ++  FP   + K+G L +    +       G 
Sbjct: 7   LPETHQMLRQTCRDFAEKELVPIAAQLDKEHLFPTSQVKKMGELGLLAMDVPEELSGAGL 66

Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
                +IA+ EI+R  AS    + V++SL +  I   GS +QKQ+++      + I C+A
Sbjct: 67  DYLAYSIALEEISRGCASTGVIMSVNNSLYLGPILKFGSSQQKQQWITPFTNGDKIGCFA 126

Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQING---Y 230
           L+EP  GSDA A +TTA +    W+L G K WI NS  A   V+FA    + Q  G   +
Sbjct: 127 LSEPGNGSDAGAASTTAREEGDSWVLNGTKAWITNSWEASATVVFASTDRSRQNKGISAF 186

Query: 231 LVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
           LV    PGLT+ K E+K+G+R     +++ +   +P E+ L
Sbjct: 187 LVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLL 227

>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]} Length = 232

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Butyryl-CoA dehydrogenase, NM domains
species: Megasphaera elsdenii [TaxId: 907]

 Score =  113 bits (284), Expect = 1e-30
 Identities = 65/225 (28%), Positives = 109/225 (48%), Gaps = 8/225 (3%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHS 114
           LT  +Q       +  EK++AP + E   K  +   +I +L +L + G   +        
Sbjct: 5   LTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSLGITGAYFEEKYGGSGD 64

Query: 115 VTG----AAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
             G      +A+ E+A+ DA  +  +    SL    I   G+E QK+K+L  L +   + 
Sbjct: 65  DGGDVLSYILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLG 124

Query: 171 CWALTEPAYGSDASALNTTATKVEGG-WILEGQKRWIGNSTFADVLVIFARNTTTNQING 229
            + LTEP  G+DAS   T ATK + G + L G K +I N   AD+ ++FA    +   +G
Sbjct: 125 AFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADIYIVFAMTDKSKGNHG 184

Query: 230 ---YLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271
              ++++   PG T  K E+K+G+   Q  +++ + V VP E+ L
Sbjct: 185 ITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENML 229

>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 271

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: acyl-CoA oxidase N-terminal domains
domain: Acyl-coenzyme A oxidase 1, domains 1 and 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 88.6 bits (219), Expect = 5e-21
 Identities = 42/172 (24%), Positives = 72/172 (41%), Gaps = 21/172 (12%)

Query: 125 IARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDAS 184
             R       ++ +H  + +  I   G+EEQ++K+L    ++  I C+A TE  +GS+  
Sbjct: 87  RLRHFIDQPAYVDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQ 146

Query: 185 ALNTTATKVEGG-------WILEGQKRWIGNST-FADVLVIFARNTTTNQ---INGYLV- 232
            L TTAT                  K W G     +   V++AR  T  +   I+G++V 
Sbjct: 147 GLETTATLDPKTDEFVIHTPTQTASKWWPGGLGKVSTHAVVYARLITNGKDYGIHGFIVQ 206

Query: 233 ------KKDAPGLTVTKIENKIG---LRIVQNGDILLKKVFVPDEDRLPGVN 275
                     P +TV  I  K+G      + NG ++   V +P +  L  ++
Sbjct: 207 LRSLEDHSPLPNITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQMLMRLS 258

>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 267

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: acyl-CoA oxidase N-terminal domains
domain: Peroxisomal acyl-CoA oxidase-II, domains 1 and 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 87.1 bits (215), Expect = 1e-20
 Identities = 43/244 (17%), Positives = 86/244 (35%), Gaps = 33/244 (13%)

Query: 54  LLTSEEQA-VRMKVRECMEKEIAPIMA----EYWEKAEFPFHVIPKLGALRVAGGTIKGY 108
           L  S E    R ++   +  +  P        +  +++     + K   +      +K  
Sbjct: 23  LDGSPENTRRRREIENLILND--PDFQHEDYNFLTRSQRYEVAVKKSATM------VKKM 74

Query: 109 GCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNT 168
              G S     +       V       + +H  + + T+    + EQ++++      L  
Sbjct: 75  REYGISDPEEIMWFKN--SVHRGHPEPLDLHLGMFLPTLLHQATAEQQERFFMPAWNLEI 132

Query: 169 IACWALTEPAYGSDASALNTTATK-------VEGGWILEGQKRWIGN-STFADVLVIFAR 220
              +A TE  +G+    L TTAT        +     +   K W G     ++  ++ A+
Sbjct: 133 TGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVTSIKWWPGGLGKTSNHAIVLAQ 192

Query: 221 NTTTNQ---INGYLV-------KKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDR 270
             T  +   ++ ++V        K  PG+TV  I  K G   + NG + +    +P E+ 
Sbjct: 193 LITQGECYGLHAFVVPIREIGTHKPLPGITVGDIGPKFGYEEMDNGYLKMDNYRIPRENM 252

Query: 271 LPGV 274
           L   
Sbjct: 253 LMKY 256

>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Length = 210

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Protein FkbI
species: Streptomyces hygroscopicus [TaxId: 1912]

 Score = 76.7 bits (187), Expect = 4e-17
 Identities = 42/208 (20%), Positives = 77/208 (37%), Gaps = 4/208 (1%)

Query: 70  MEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARV 128
           +   +    AE+    E P  ++ +LGA  +    +   +G  G          A +  +
Sbjct: 6   LTDLVGDRAAEWDTSGELPRDLLVRLGADGLLCAEVAAEHGGLGLGSRENGEFTAHVGSL 65

Query: 129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNT 188
            +S  + +      A     L  + ++        +       +  +E   GSD SA+ T
Sbjct: 66  CSSLRSVMTSQGMAAWTVQRLGDAGQRATFLKELTSGKLAAVGF--SERQAGSDLSAMRT 123

Query: 189 TATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKI 248
                    +++G K W   + +AD LV+F            +V  D PG+ V ++    
Sbjct: 124 RVRLDGDTAVVDGHKVWTTAAAYADHLVVFGL-QEDGSGAVVVVPADTPGVRVERVPKPS 182

Query: 249 GLRIVQNGDILLKKVFVPDEDRLPGVNS 276
           G R   + D+ L +V VP    L G  +
Sbjct: 183 GCRAAGHADLHLDQVRVPAGAVLAGSGA 210

>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]} Length = 275

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains
species: Clostridium aminobutyricum [TaxId: 33953]

 Score = 72.7 bits (178), Expect = 2e-15
 Identities = 27/183 (14%), Positives = 55/183 (30%), Gaps = 35/183 (19%)

Query: 121 AIAEIARVDASCSTFILVHSSLAMLTI------ALCGSE--EQKQKYLPSLAQLNTIACW 172
               + +  ASC    +   +   +           G+   +   +YL  + + + I   
Sbjct: 88  MQRLLGQKTASCFQRCVGMDAFNAVFSTTYEIDQKYGTNYHKNFTEYLKYIQENDLIVDG 147

Query: 173 ALTEPAYGSDASA--------LNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTT 224
           A+T+P      +               K E G ++ G K     S  +   +I      T
Sbjct: 148 AMTDPKGDRGLAPSAQKDPDLFLRIVEKREDGIVVRGAKAHQTGSINSHEHIIMPTIAMT 207

Query: 225 ----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNG---------------DILLKKVFV 265
               +    +    DA GL +         R ++ G                ++   VF+
Sbjct: 208 EADKDYAVSFACPSDADGLFMIYGRQSCDTRKMEEGADIDLGNKQFGGQEALVVFDNVFI 267

Query: 266 PDE 268
           P++
Sbjct: 268 PND 270

>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Length = 259

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Nitroalkane oxidase
species: Fusarium oxysporum [TaxId: 5507]

 Score = 70.6 bits (171), Expect = 1e-14
 Identities = 40/253 (15%), Positives = 75/253 (29%), Gaps = 36/253 (14%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYW------EKAEFPFHVIPKLGALRVAGGTI-KG 107
           L+  +   R   +      +    AEY        + +       +     +    +   
Sbjct: 5   LSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIP 64

Query: 108 YGCPGHSVTGAAIAIAEIARVDA-SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQL 166
            G    S+   +I + E+  V+  +  T +     L  + +    S ++K        + 
Sbjct: 65  LGGTMESLVHESIILEELFAVEPATSITIVATALGLMPVILCDSPSLQEKFLKPFISGEG 124

Query: 167 NTIACWALTEPAYGS-----DASALNTTATKVEGGWILEGQKRWIGNSTFAD-----VLV 216
             +A    +EP   +         L TTA KV   W++ G+K W  NS   D     +  
Sbjct: 125 EPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLAC 184

Query: 217 IFARNTTT------------NQINGYLVKKDAPGLT------VTKIENKIGLRIVQNGDI 258
           +  R +               QI   LV ++           +       G         
Sbjct: 185 VVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHT 244

Query: 259 LLKKVFVPDEDRL 271
              +  VP E+ L
Sbjct: 245 RFTEFHVPHENLL 257

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	325
d3mdea2	231	Medium chain acyl-CoA dehydrogenase, NM domains {P	100.0
d2d29a2	233	Acyl-CoA dehydrogenase {Thermus thermophilus [TaxI	100.0
d1jqia2	231	Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus	100.0
d1ukwa2	227	Medium chain acyl-CoA dehydrogenase, NM domains {T	100.0
d1siqa2	236	Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapie	100.0
d1ivha2	236	Isovaleryl-coa dehydrogenase, NM domains {Human (H	100.0
d1rx0a2	231	Isobutyryl-CoA dehydrogenase {Human (Homo sapiens)	100.0
d1r2ja2	210	Protein FkbI {Streptomyces hygroscopicus [TaxId: 1	100.0
d1buca2	232	Butyryl-CoA dehydrogenase, NM domains {Megasphaera	100.0
d2c12a2	259	Nitroalkane oxidase {Fusarium oxysporum [TaxId: 55	100.0
d2ddha3	267	Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {	99.98
d1w07a3	271	Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale	99.97
d1u8va2	275	4-hydroxybutyryl-CoA dehydratase AbfD, NM domains	99.87

>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=7.2e-49  Score=343.82  Aligned_cols=222  Identities=27%  Similarity=0.473  Sum_probs=209.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccC
Q 020535           51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVD  129 (325)
Q Consensus        51 ~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~  129 (325)
                      |++.||+|++++++.+++|+++++.|.+.++|+++.+|+++|++|++.||+++ +|++|||.|.+....+.+.|++++.+
T Consensus         2 mdf~lseeq~~l~~~~r~f~~~~~~p~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e~l~~~~   81 (231)
T d3mdea2           2 FSFELTEQQKEFQATARKFAREEIIPVAAEYDRTGEYPVPLLKRAWELGLMNTHIPESFGGLGLGIIDSCLITEELAYGC   81 (231)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHCCCCHHHHHHHHHHTCSSTTSCGGGTCCCCCHHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhCchhHHHHHHcCCCCHHHHHHHHHhhhccccccccccCccccccccccchhhhcccc
Confidence            67789999999999999999999999999999999999999999999999999 99999999999999999999999999


Q ss_pred             CcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCC
Q 020535          130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS  209 (325)
Q Consensus       130 ~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~  209 (325)
                      .+.++.+..+. .+...|..+|+++||++|+|++++|+.++|+|+|||++|||+.+++|+|++++|||+|||+|+||||+
T Consensus        82 ~~~~~~~~~~~-~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~lnG~K~~vt~~  160 (231)
T d3mdea2          82 TGVQTAIEANT-LGQVPLIIGGNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNG  160 (231)
T ss_dssp             HHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHTTSCCEEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred             ccccccccccc-ccchhhhhcCcccccccccchhcCCceEEEEEecCCCCCCCccCCEEEEEEECCEEEEEEEEEEeCCc
Confidence            98887765554 56678899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEEEeCCC------CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCC
Q 020535          210 TFADVLVIFARNTTT------NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG  273 (325)
Q Consensus       210 ~~Ad~~~v~a~~~~~------~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~  273 (325)
                      +.||+++|+|+++.+      .++++|+||++.|||++.+.|+++|++++++++|.|+||+||++++||+
T Consensus       161 ~~a~~~~~~a~t~~~~~~~~~~~~~~~lv~~d~~Gv~v~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~lG~  230 (231)
T d3mdea2         161 GKANWYFLLARSDPDPKAPASKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTG  230 (231)
T ss_dssp             TTEEEEEEEEECCCCTTSCHHHHEEEEEEETTSTTEEEEEECCBSSCTTSCEEEEEEEEEEEEGGGBSSC
T ss_pred             hhccccceecccccccccccccceEEEEEeCCCCCeEEccCcccccCCCCCeEEEEEeeEEEcHHhEecC
Confidence            999999999998643      2589999999999999999999999999999999999999999999985

>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Acyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.6e-48  Score=341.25  Aligned_cols=223  Identities=36%  Similarity=0.536  Sum_probs=211.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccC
Q 020535           51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVD  129 (325)
Q Consensus        51 ~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~  129 (325)
                      |-+.|++|++++++.+|+|+++++.|.+.++|+.+.+|+++|++|++.||+++ +|++|||.|++..+.+.+++++++.+
T Consensus         2 ~~F~l~~e~~~l~~~~r~f~~~~i~p~a~e~d~~~~~p~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~~~~~~~~   81 (233)
T d2d29a2           2 LWFEEGAEERQVLGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEFGVFGALVPEAYGGAGLSTRLFARMVEAIAYYD   81 (233)
T ss_dssp             CTTSCCHHHHHHHHHHHHHHHHHTGGGHHHHHHHCCCCHHHHHHHHTTTGGGSSSCGGGTCCCCCHHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhCcccHHHHHHhCCCCHHHHHHHHHhccccccccccccccccchhhhccccccccccc
Confidence            34569999999999999999999999999999999999999999999999999 99999999999999999999999999


Q ss_pred             CcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCC
Q 020535          130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS  209 (325)
Q Consensus       130 ~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~  209 (325)
                      .+.++.+.+|.......+..+|+++||++|||++++|+.++|+|+|||++|||+..++|+|++++|||+|||+|+||||+
T Consensus        82 ~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~~~~~~lnG~K~~vs~~  161 (233)
T d2d29a2          82 GALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQG  161 (233)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTSSSCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred             cccccccccccccchHHHHHhChHHHHHhhCccccCCCEEEEEEecCCCCCCcccceeEEEEEECCEEEEecceeccccc
Confidence            99888887877667778999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEEEeCCC-------CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCC
Q 020535          210 TFADVLVIFARNTTT-------NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG  273 (325)
Q Consensus       210 ~~Ad~~~v~a~~~~~-------~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~  273 (325)
                      ..||+++|+|++.++       .++++|+||+++|||++.+.|+++|+|++++++|.|+||+||.+++||+
T Consensus       162 ~~a~~~~v~a~~~~~~~~~~~~~g~~~~lv~~~~~Gv~i~~~~~~~G~r~~~~~~v~f~~v~VP~~~llGe  232 (233)
T d2d29a2         162 SVAGVYVVMARTDPPPSPERKHQGISAFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGE  232 (233)
T ss_dssp             TTCSEEEEEEECSCCSCGGGTTTTEEEEEEECCSSSEEECCCCCCSSCTTSCEEEEEEEEEEEEGGGEESS
T ss_pred             cccccccccccccCCccccccccCceEEEEEcCCCCcEECCcccccccCCCCeEEEEEeeEEECHHHcCcC
Confidence            999999999998542       3589999999999999999999999999999999999999999999986

>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Butyryl-CoA dehydrogenase, NM domains
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.2e-48  Score=341.28  Aligned_cols=224  Identities=33%  Similarity=0.493  Sum_probs=212.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccC
Q 020535           51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVD  129 (325)
Q Consensus        51 ~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~  129 (325)
                      |+..|++|+++|++.+++|+++++.|.+.++|+.+.+|.++|++|++.||+++ +|++|||.|++..+.+.++|++++.+
T Consensus         3 ~~~~L~ee~~~l~~~~r~f~~~~i~p~a~~~d~~~~~p~e~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~   82 (231)
T d1jqia2           3 QSVELPETHQMLRQTCRDFAEKELVPIAAQLDKEHLFPTSQVKKMGELGLLAMDVPEELSGAGLDYLAYSIALEEISRGC   82 (231)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCHHHHHHHHHHTTTSSSSCGGGTCCCCCHHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhChHHHHHHHhcCCCCHHHHHHHHHhCCcccccccccCCCchhHHHHHHHHHHHHhhc
Confidence            45569999999999999999999999999999999999999999999999999 99999999999999999999999999


Q ss_pred             CcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCC
Q 020535          130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS  209 (325)
Q Consensus       130 ~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~  209 (325)
                      .+.+....++...+...+..+|+++||++|||++++|+.++|+++|||++|||+..+.|+|+++++||+|||+|.||||+
T Consensus        83 ~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~g~~~~~~a~tEp~~gsd~~~~~t~a~~~~~~~~lnG~K~~vt~~  162 (231)
T d1jqia2          83 ASTGVIMSVNNSLYLGPILKFGSSQQKQQWITPFTNGDKIGCFALSEPGNGSDAGAASTTAREEGDSWVLNGTKAWITNS  162 (231)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHCCHHHHHHHTGGGSSSSCCEEEECCBTTBSSSTTCCCCEEEECSSEEEEEEEEEEEETT
T ss_pred             cccccceeeeccchhhhhhhcCCHHHHHHHhCcccCCCccccceeccCCCCccCcccceEEEEECCEEEEeeeeeeEeec
Confidence            88887777777667789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEEEeCC---CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC
Q 020535          210 TFADVLVIFARNTT---TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV  274 (325)
Q Consensus       210 ~~Ad~~~v~a~~~~---~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~  274 (325)
                      ..||++++.+++++   ..++++|+||++.|||++.+.|+++|+|++++++|+|+||+||++++||++
T Consensus       163 ~~a~~~~v~a~~~~~~~~~g~~~~~Vp~~~~Gv~i~~~~~~~G~r~~~~~~v~fd~v~Vp~~~~lG~~  230 (231)
T d1jqia2         163 WEASATVVFASTDRSRQNKGISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEP  230 (231)
T ss_dssp             TTCSEEEEEEESCGGGGGGSEEEEEEESSCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESST
T ss_pred             ccccccccccccccccccCCceEEEEeCCCCCeEECCccCccccCCCceEEEEEeeEEEcHHHCCCCC
Confidence            99999999999853   346899999999999999999999999999999999999999999999875

>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.6e-48  Score=339.84  Aligned_cols=222  Identities=32%  Similarity=0.489  Sum_probs=209.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccC
Q 020535           51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVD  129 (325)
Q Consensus        51 ~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~  129 (325)
                      |++.||+|++++++.+++|+++++.|.+.++|+.+.+|+++|++|++.|++++ +|++|||.|.+..+.+.++|++++.+
T Consensus         1 Mdf~Lteeq~~l~~~~r~f~~~~~~p~a~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~GG~g~~~~~~~~v~e~~~~~~   80 (227)
T d1ukwa2           1 IDFSLTEEQRQLQALARRFAKEVILPVAQEYDEKEEVPWPVIEKLHEVGLLNAIIPEEYGGMGLKMLDEVIVGEELAYAC   80 (227)
T ss_dssp             CBCCCCHHHHHHHHHHHHHHHHTTGGGHHHHHHHTCCCHHHHHHHHHTTCTTTTSCGGGTSCCCCHHHHHHHHHHHHHHC
T ss_pred             CcCCCCHHHHHHHHHHHHHHHHhChHHHHHHHhcCCCCHHHHHHHHhhhhhhhccccccCcccccccccccchhhhcccc
Confidence            56679999999999999999999999999999999999999999999999999 99999999999999999999999999


Q ss_pred             CcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCC
Q 020535          130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS  209 (325)
Q Consensus       130 ~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~  209 (325)
                      .+++.+...+ ..+...+..+|+++||++|++++.+|+.++|+++|||++|||+..++|+|++++|||+|||+|.||||+
T Consensus        81 ~~~~~~~~~~-~~~~~~i~~~g~~~qk~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~~  159 (227)
T d1ukwa2          81 MGIYTIPMAS-DLGITPVLLAGTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNG  159 (227)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHGGGTSSSCEEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred             cccccccccc-ccchhhhhccCCHHHHHHhccccccccccccccccCCCcCcCCcCceEEEEEECCEEEEEeEEeccCcc
Confidence            8877665544 356678889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEEEeCCC---CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCC
Q 020535          210 TFADVLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG  273 (325)
Q Consensus       210 ~~Ad~~~v~a~~~~~---~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~  273 (325)
                      ..||+++|.|+++++   .++++|+||++.|||++.+.|+++|+|++++++|+|+||+||++++||+
T Consensus       160 ~~Ad~~~v~a~~~~~~~~~g~~~f~V~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~llGe  226 (227)
T d1ukwa2         160 GEAEWVVVFATVNPELRHKGVVALVVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRLGE  226 (227)
T ss_dssp             TTEEEEEEEEESCGGGGGGGEEEEEEETTCTTEEEEECCCCSSCTTSCEEEEEEEEEEEEGGGEESC
T ss_pred             ccchhhccccccCCccCcCCcEEEEEeCCCCceEeccccCcccCCCCceEEEEEeeEEEcHHHccCC
Confidence            999999999998643   4689999999999999999999999999999999999999999999986

>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Glutaryl-CoA dehydrogenase GCDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.1e-48  Score=338.76  Aligned_cols=228  Identities=38%  Similarity=0.621  Sum_probs=213.0

Q ss_pred             CCcccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCCcccCCCCCCccHHHHHHHHHHH
Q 020535           46 SDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEI  125 (325)
Q Consensus        46 ~d~~~~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~p~~~GG~g~s~~~~~~v~e~l  125 (325)
                      +|.+.|++.||+|++++++.+++|+++++.|.+.+.|+++.+|+++|+++.+.|++++.++++||.|.+..+.+.+++++
T Consensus         5 ~d~~~~d~~Lteeq~~l~d~~r~f~~~~i~p~~~~~d~~~~~p~~~~~~~~~~g~~~~~i~~~gg~g~~~~~~~~~~e~~   84 (236)
T d1siqa2           5 QDPLVLEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIKGYGCAGVSSVAYGLLAREL   84 (236)
T ss_dssp             TSTTCGGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCTHHHHHHHHTTCSSTTCEETTEECCCHHHHHHHHHHH
T ss_pred             CCcccccccCCHHHHHHHHHHHHHHHhhCChhHHHHHhcCCCCHHHHHHhhhhhcccccccccccCCcCHHHHHHHHHhh
Confidence            47788888899999999999999999999999999999999999999999999999994467999999999999999999


Q ss_pred             HccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEE--EEeCCEEEEEeEe
Q 020535          126 ARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTA--TKVEGGWILEGQK  203 (325)
Q Consensus       126 a~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a--~~~~~g~~lnG~K  203 (325)
                      ++.+.+.+..+.++..++...+..+|+++||++|||++++|++++|+|+|||++|||+..+.|++  ++++++|+|||+|
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~L~~l~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~~~~~~~vlnG~K  164 (236)
T d1siqa2          85 ERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTK  164 (236)
T ss_dssp             HTTCHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEEEEE
T ss_pred             hccccccccccccccccchhhhhhhcCHHHHHHhcCccCCCCEEecccCcCCCcccccccccccccccccccceEecccc
Confidence            99998888777777767788999999999999999999999999999999999999999998877  6678889999999


Q ss_pred             ecccCCCCCCEEEEEEEeCCCCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC
Q 020535          204 RWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV  274 (325)
Q Consensus       204 ~~it~~~~Ad~~~v~a~~~~~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~  274 (325)
                      .||||+..||+++|+||+++ +++++|+||++.|||++.+.++++|+|++++++|.|+||+||++++||+.
T Consensus       165 ~~vt~a~~Ad~~~V~art~~-~~~~~flV~~~~~Gv~v~~~~~~~g~r~~~~~~l~fd~V~VP~~~llGg~  234 (236)
T d1siqa2         165 TWITNSPMADLFVVWARCED-GCIRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGA  234 (236)
T ss_dssp             EEEETGGGCSEEEEEEEETT-SCEEEEEEETTCTTEECCBCCCCSSSTTSCEEEEEEEEEEEEGGGBCTTC
T ss_pred             ccEecCCCceEEEEEecccC-CcceEEeecCCCCCeEeCCcccccccccCceEEEEEeeEEECHHHCcCCC
Confidence            99999999999999999964 56999999999999999999999999999999999999999999999864

>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isovaleryl-coa dehydrogenase, NM domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-47  Score=333.12  Aligned_cols=222  Identities=29%  Similarity=0.462  Sum_probs=209.5

Q ss_pred             CCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCC--hhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCC
Q 020535           54 LLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFP--FHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDA  130 (325)
Q Consensus        54 ~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p--~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~  130 (325)
                      .||+||+++++.+++|+++++.|.+.++|+.+.+|  +++|+++.+.||+++ +|+++||.|.+..+.+.++|++++.++
T Consensus         7 ~Lseeq~~l~d~~~~f~~~~~~p~~~~~d~~~~~~~~~e~~~~l~~~G~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~   86 (236)
T d1ivha2           7 GLSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASG   86 (236)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCTTHHHHHHHHHHHTCTTTTSCGGGTCCCCCHHHHHHHHHHHHHHCH
T ss_pred             CCCHHHHHHHHHHHHHHHHhCChhHHHHHhhCCCccHHHHHHHHHHhhhccccccccccccCcccchhhhhhhhhhhhhh
Confidence            48999999999999999999999999999988887  589999999999999 999999999999999999999999999


Q ss_pred             cchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCC
Q 020535          131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST  210 (325)
Q Consensus       131 s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~  210 (325)
                      ++++.+.+|..+++.+|..+|+++||++|||++++|++++|+|+|||++|||+.++.|+|++++|||+|||+|.||||+.
T Consensus        87 ~~~~~~~~~~~~~~~~l~~~gs~~qk~~~l~~~~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~vs~~~  166 (236)
T d1ivha2          87 AVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGP  166 (236)
T ss_dssp             HHHHHHHHHHTTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECSSEEEEEEEEEEEETGG
T ss_pred             ccceeeeehhhhhHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCccccCeEEEEEECCEEEEEEEEEEEeCCc
Confidence            98888877776677889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEEeCC-----CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCCC
Q 020535          211 FADVLVIFARNTT-----TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVN  275 (325)
Q Consensus       211 ~Ad~~~v~a~~~~-----~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~~  275 (325)
                      .||+++|+|+++.     ++++++|+||++.||+++.+.++++|++++++++++|+||+||.+++||+++
T Consensus       167 ~a~~~~v~a~~~~~~~~~~~g~~~flV~~~~~Gv~i~~~~~~~G~~~~~~~~v~fd~v~Vp~~~llGeen  236 (236)
T d1ivha2         167 DADVLIVYAKTDLAAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHEN  236 (236)
T ss_dssp             GCSEEEEEEESCTTCSSGGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESCTT
T ss_pred             cccccccccccccccccccCccEEEEEeCCCCceEeCCCcCcccCCCCceEEEEEeeEEEcHHHcCCCCC
Confidence            9999999999742     2469999999999999999999999999999999999999999999998753

>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isobutyryl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-46  Score=328.87  Aligned_cols=221  Identities=29%  Similarity=0.450  Sum_probs=209.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCc
Q 020535           53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDAS  131 (325)
Q Consensus        53 ~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s  131 (325)
                      ..|++|+++|++.+++|+++++.|.+.++|+++.+|+++|+++++.||+++ +|++|||.|.+..+.+.+++++++++.+
T Consensus         8 ~~Lt~e~~~l~~~~r~F~~~~i~p~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vp~~~GG~g~~~~~~~~~~e~l~~~~~~   87 (231)
T d1rx0a2           8 MGLNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYIQTDVGGSGLSRLDTSVIFEALATGCTS   87 (231)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCHHHHHHHHHTTCSSTTSCGGGTCCCCCHHHHHHHHHHHHTTCHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCchhHHHHHhcCCCCHHHHHHHHHcCCcccccchhhccccccchhhhhhHHHHhhhccc
Confidence            448999999999999999999999999999999999999999999999999 9999999999999999999999999999


Q ss_pred             chhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCCC
Q 020535          132 CSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTF  211 (325)
Q Consensus       132 ~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~~  211 (325)
                      ++.++.+|. .++..+..+|+++|+++|++++.+|+..+++++|||+.|||+.++.|+|++++|||+|||+|.||||+..
T Consensus        88 ~~~~~~~~~-~~~~~l~~~~~~e~~~~~l~~~~~g~~~~~~~~te~~~gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~~~  166 (231)
T d1rx0a2          88 TTAYISIHN-MCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAGE  166 (231)
T ss_dssp             HHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETTTT
T ss_pred             ccccccccc-chhhhhhhhcchhhhhhhcchhhcccccccccccccccCCCCCCceEEEEEECCEEEEEeEEccccCCCc
Confidence            888777664 5677899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEEEeCCC--CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC
Q 020535          212 ADVLVIFARNTTT--NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV  274 (325)
Q Consensus       212 Ad~~~v~a~~~~~--~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~  274 (325)
                      ||+++|++++++.  .++++|+||++.|||++.+.|+++|+|++++++|+|+||+||++++||++
T Consensus       167 Ad~~~v~a~~~~~~~~~~~~~lv~~d~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~llG~E  231 (231)
T d1rx0a2         167 SDIYVVMCRTGGPGPKGISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGSE  231 (231)
T ss_dssp             CSEEEEEEESSSSSGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESST
T ss_pred             CCEEEEEEeecCCCCCceEEEEEeCCCCceEecCccCccccCCCceEEEEEccEEEcHHHEeCCC
Confidence            9999999998643  46999999999999999999999999999999999999999999999863

>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Protein FkbI
species: Streptomyces hygroscopicus [TaxId: 1912]

Probab=100.00  E-value=1.9e-44  Score=311.65  Aligned_cols=204  Identities=23%  Similarity=0.320  Sum_probs=190.8

Q ss_pred             HHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhhHHHHH
Q 020535           68 ECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLT  146 (325)
Q Consensus        68 ~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~~~~~~~~~~~~~~~  146 (325)
                      .|+.+.+.|++.++|+++.||+++|+++++.||+++ +|++|||.|++..+.+.++|++++.|.+++..+..|. ++..+
T Consensus         4 a~~~~~i~~~Aae~d~~~~~p~~~~~~l~~~Gl~~~~iP~e~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~-~~~~~   82 (210)
T d1r2ja2           4 ALLTDLVGDRAAEWDTSGELPRDLLVRLGADGLLCAEVAAEHGGLGLGSRENGEFTAHVGSLCSSLRSVMTSQG-MAAWT   82 (210)
T ss_dssp             HHHHHHHSSCHHHHHHHTCCCHHHHHHHHHTTTTSTTSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHH-HHHHH
T ss_pred             HHHHhhhhHhHHHHHHhCCCCHHHHHHHHHcCCCcccCChhHccccccHHHHhhhhcccccccccccccccccc-ccchh
Confidence            467788999999999999999999999999999999 9999999999999999999999999999888776765 56788


Q ss_pred             HHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeEeecccCCCCCCEEEEEEEeCCCCC
Q 020535          147 IALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQ  226 (325)
Q Consensus       147 l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g~~lnG~K~~it~~~~Ad~~~v~a~~~~~~~  226 (325)
                      |..+|+++||++|+|++.+|+. .++++|||..|||+..++|+++++++||+|||+|.||||+..||+++|++++++ ++
T Consensus        83 l~~~gs~~qk~~~l~~~~~g~~-~~~~~te~~~gs~~~~~~t~a~~~~~g~~l~G~K~~vs~a~~Ad~~~v~a~~~~-~~  160 (210)
T d1r2ja2          83 VQRLGDAGQRATFLKELTSGKL-AAVGFSERQAGSDLSAMRTRVRLDGDTAVVDGHKVWTTAAAYADHLVVFGLQED-GS  160 (210)
T ss_dssp             HHHHSCHHHHHHHHHHTTCC-C-EEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEETTTTTCSEEEEEEBCSS-SC
T ss_pred             hhhccccccccccccccccccc-ccccccccccccccccccceEEEeccceEEEEeecccccccccccccceeeecC-CC
Confidence            9999999999999999999985 679999999999999999999999999999999999999999999999999764 45


Q ss_pred             eEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC
Q 020535          227 INGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV  274 (325)
Q Consensus       227 ~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~  274 (325)
                      .++||||++.|||++.+.|+++|+|++++++++|+||+||++++||++
T Consensus       161 ~~~~lv~~~~~Gv~v~~~~~~~G~r~~~~~~v~f~~v~VP~~~~lG~~  208 (210)
T d1r2ja2         161 GAVVVVPADTPGVRVERVPKPSGCRAAGHADLHLDQVRVPAGAVLAGS  208 (210)
T ss_dssp             CEEEEEETTSTTEEEEECSSCSSSTTSCCEEEEEEEEEEEGGGBCTTT
T ss_pred             ceEEeecCCCCCeEeccCCCcccCCCCCeEEEEEeeEEECHHHCcCCC
Confidence            689999999999999999999999999999999999999999999975

>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Butyryl-CoA dehydrogenase, NM domains
species: Megasphaera elsdenii [TaxId: 907]

Probab=100.00  E-value=2.9e-44  Score=314.86  Aligned_cols=224  Identities=31%  Similarity=0.449  Sum_probs=203.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCChhHHHHHHhCcccCC-cccCCCCC---CccHHHHHHHHHHHH
Q 020535           51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCP---GHSVTGAAIAIAEIA  126 (325)
Q Consensus        51 ~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~---g~s~~~~~~v~e~la  126 (325)
                      |++.+|++++++++.+++|+++++.|.+.++|+.+.+|+++|++|++.|++++ +|++|||.   +........+.+..+
T Consensus         1 Mdf~lt~~~~~l~~~~r~f~~~~l~p~~~e~D~~~~~p~e~~~~l~~~G~~~~~vP~~~Gg~~~~~~~~~~~~~~~~~~~   80 (232)
T d1buca2           1 MDFNLTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSLGITGAYFEEKYGGSGDDGGDVLSYILAVEELA   80 (232)
T ss_dssp             CBCCCCHHHHHHHHHHHHHHHHTTTTTHHHHHHHTCCCHHHHHHHHTTSGGGTTSCGGGTCGGGGTCCHHHHHHHHHHHH
T ss_pred             CcCCCCHHHHHHHHHHHHHHHHhCchhHHHHHhcCCCCHHHHHHHHhhhcccccccccccccccccccchheehhhhhhh
Confidence            66779999999999999999999999999999999999999999999999999 99999955   456777888888887


Q ss_pred             ccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCCE-EEEEeEeec
Q 020535          127 RVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGG-WILEGQKRW  205 (325)
Q Consensus       127 ~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~g-~~lnG~K~~  205 (325)
                      ............+..++...+..+|+++||++|++++++|++++|+|+|||.+|+|...+.|+|++++|| |+|||+|+|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~k~~~~~~~~~G~~~~~~a~te~~~gs~~~~~~t~a~~~~dg~~~lnG~K~~  160 (232)
T d1buca2          81 KYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIF  160 (232)
T ss_dssp             HHCHHHHHHHHHHHHHTHHHHHHHCCHHHHHHTHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEECTTSCEEEEEEEEE
T ss_pred             hccccccccccchhhhhhhHHHHhhhhhhhhhhhhhhhCCCEEecccccccccccccccceEEEEEcCCCEEEEEEEEee
Confidence            7666555444444455677899999999999999999999999999999999999999999999999886 999999999


Q ss_pred             ccCCCCCCEEEEEEEeCCC---CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCCC
Q 020535          206 IGNSTFADVLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV  274 (325)
Q Consensus       206 it~~~~Ad~~~v~a~~~~~---~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~  274 (325)
                      |||+..||+++|.++++++   .++++|+||+++|||++.+.|+++|+|++++++|+|+||+||.+++||++
T Consensus       161 vt~a~~ad~~~v~a~~~~~~~~~g~~~~lv~~~~~Gv~i~~~~~~~G~r~~~~~~l~f~~v~vp~~~llGee  232 (232)
T d1buca2         161 ITNGGAADIYIVFAMTDKSKGNHGITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEE  232 (232)
T ss_dssp             EETTTTCSEEEEEEESCSSSSTTSEEEEEEETTCTTEEEEEECCCSSCTTSCEEEEEEEEEEECGGGEESCT
T ss_pred             ecccccceEEEEEEEecCCCCCceeEEEEEeCCCCceEeCCccCcccCCCCceEEEEEeeEEEcHHHccCCC
Confidence            9999999999999998543   47899999999999999999999999999999999999999999999863

>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Nitroalkane oxidase
species: Fusarium oxysporum [TaxId: 5507]

Probab=100.00  E-value=2.7e-44  Score=320.36  Aligned_cols=222  Identities=21%  Similarity=0.272  Sum_probs=196.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHh----C--CCChhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHH
Q 020535           51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEK----A--EFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIA  123 (325)
Q Consensus        51 ~~~~l~~~~~~l~~~~~~f~~~~~~~~~~~~d~~----~--~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e  123 (325)
                      |++.|+++++++++.+++|+++++.|...++++.    +  ..++++|+++++.||+++ +|++|||.|++..+.+.++|
T Consensus         1 mdf~lt~eq~~l~~~~r~f~~~~~~p~~~~~~~~~d~~~~~~~~~e~~~~~~~~G~~~~~vPee~GG~g~~~~~~~~~~e   80 (259)
T d2c12a2           1 VDFKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILE   80 (259)
T ss_dssp             CBCCCCHHHHHHHHHHHHHHHHTGGGHHHHHTTCSSHHHHHHTTHHHHHHHHHTTTTGGGSBGGGTCCBCCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhCCcchHHHhhhccccccccchHHHHHHHHHcCCCCcCCChHHhhccchhhhhhhhhh
Confidence            6677999999999999999999999987765432    2  347899999999999999 99999999999999999999


Q ss_pred             HHHccCCcchhHHHHhhhHHHHHHHhcCCHHHHHhhchhhhc--CCceeEEEecCCCCCCCCC-----CCceEEEEeCCE
Q 020535          124 EIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQ--LNTIACWALTEPAYGSDAS-----ALNTTATKVEGG  196 (325)
Q Consensus       124 ~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~--g~~~~~~a~tEp~~Gsd~~-----~~~~~a~~~~~g  196 (325)
                      ++++.+++++..+.+|. ++...+..+|+++||++||+++++  |++++|+++|||++|||+.     .++|+|++++++
T Consensus        81 el~~~~~~~~~~~~~~~-~~~~~i~~~g~~eq~~~~l~~~~~~~g~~~~a~a~TEp~~Gsd~~~~~~~~~~t~a~~~g~~  159 (259)
T d2c12a2          81 ELFAVEPATSITIVATA-LGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNE  159 (259)
T ss_dssp             HHHTTCCTTHHHHHHHH-HHHHHHHHSSCHHHHHHHTGGGGSSCSCCCEEEECCCTTCSTTTTCTTSCCCSCEEEEETTE
T ss_pred             hcccccccccccccccc-chHHHHHHhhhccccccccccccccceeeeeeccccCCccccccccccccccccccccccch
Confidence            99999999988876664 677788899999999999999987  7789999999999999974     588999999999


Q ss_pred             EEEEeEeecccCCC-----CCCEEEEEEEeCCC------------CCeEEEEEeCCCCC------eEEeccCCccCcccc
Q 020535          197 WILEGQKRWIGNST-----FADVLVIFARNTTT------------NQINGYLVKKDAPG------LTVTKIENKIGLRIV  253 (325)
Q Consensus       197 ~~lnG~K~~it~~~-----~Ad~~~v~a~~~~~------------~~~~~~lv~~~~~G------v~~~~~~~~~G~~~~  253 (325)
                      |+|||+|+||||+.     .||+++|+||++++            .++++|+||++.||      +++...++++|++++
T Consensus       160 ~vlnG~K~~vt~a~~~~~~~ad~~~v~ar~~~~~~~~~~~~~~~~~g~s~~lVp~~~~g~~~~~~~~~~~~~~~~G~~~~  239 (259)
T d2c12a2         160 WVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITT  239 (259)
T ss_dssp             EEEEEEEECCTTTTTTTSSCCSEEEEEEEECSCTTSCCCTTSCGGGGEEEEEECHHHHHTSCGGGEEEEECCCBSSCTTC
T ss_pred             hccceeeeeecCCcccccccceEEEEEEEecCCCccccccccCCCCceEEEEEeCCCCCcccCCCeeecCcccccccccC
Confidence            99999999999984     58899999998532            36899999988665      555567899999999


Q ss_pred             ceeeEEEeeeeeCCCCCcCC
Q 020535          254 QNGDILLKKVFVPDEDRLPG  273 (325)
Q Consensus       254 ~~~~v~f~~v~Vp~~~~lg~  273 (325)
                      .++++.|+||+||.+++||.
T Consensus       240 ~~~~v~f~dv~Vp~~~llGt  259 (259)
T d2c12a2         240 SGPHTRFTEFHVPHENLLCT  259 (259)
T ss_dssp             CCCEEEEEEEEEEGGGBCSC
T ss_pred             ceEEEEEeeEEECHHHeeCc
Confidence            99999999999999999983

>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: acyl-CoA oxidase N-terminal domains
domain: Peroxisomal acyl-CoA oxidase-II, domains 1 and 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.98  E-value=1.3e-32  Score=244.47  Aligned_cols=210  Identities=19%  Similarity=0.242  Sum_probs=156.0

Q ss_pred             CHHHHHHHHHHHHHHHhhccccHHHHHHhCCCC-hhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcch
Q 020535           56 TSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFP-FHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCS  133 (325)
Q Consensus        56 ~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p-~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~~  133 (325)
                      ++++.+++..+++++.+.  |.... +....+. .+.++...+.++... .++++|+.  +......+.++ ...+.+..
T Consensus        26 ~~e~~~~r~~v~~~i~~d--p~f~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~G~~--~~~~~~~~~~~-~~~~~~~~   99 (267)
T d2ddha3          26 SPENTRRRREIENLILND--PDFQH-EDYNFLTRSQRYEVAVKKSATMVKKMREYGIS--DPEEIMWFKNS-VHRGHPEP   99 (267)
T ss_dssp             SHHHHHHHHHHHHHHHTC--GGGCC-SCGGGSCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHH-HHTTCCCT
T ss_pred             CHHHHHHHHHHHHHHhcC--cccCC-cccccCCHHHHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHhh-hccCCCce
Confidence            356667777788877653  11111 0111122 345555444444333 45666654  23333333333 33333333


Q ss_pred             hHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEeCC--EEEEEe-----Eeecc
Q 020535          134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEG--GWILEG-----QKRWI  206 (325)
Q Consensus       134 ~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~~~--g~~lnG-----~K~~i  206 (325)
                        +.+|..+....|..+|+++||++|||++++|+.++|+|+|||++|||+..++|+|+++++  .|+|||     +|+||
T Consensus       100 --~~v~~~l~~~~i~~~Gt~eqk~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~T~A~~~~~~~~~vlnG~k~~~~K~wi  177 (267)
T d2ddha3         100 --LDLHLGMFLPTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVTSIKWWP  177 (267)
T ss_dssp             --THHHHHTHHHHHC-CCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCSSTTSEECC
T ss_pred             --ehhhhhhhhhHHHhhCCHHHHHHHHHHHhcCCeeeeehhcccCccccccccccceeecccCceeecCccccceeeecC
Confidence              346666677789999999999999999999999999999999999999999999998874  599999     69999


Q ss_pred             cC-CCCCCEEEEEEEeCC---CCCeEEEEEeC-------CCCCeEEeccCCccCccccceeeEEEeeeeeCCCCCcCC
Q 020535          207 GN-STFADVLVIFARNTT---TNQINGYLVKK-------DAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG  273 (325)
Q Consensus       207 t~-~~~Ad~~~v~a~~~~---~~~~~~~lv~~-------~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~  273 (325)
                      || +..|++++|+||+..   +.|+++|+||.       +.|||++.+.++++|+++++++.+.|+||+||.+++|++
T Consensus       178 t~~~~~a~~~iv~a~~~~~~~~~G~s~F~V~~~~~~~~~~~pGv~v~~~~~~~G~~~~~~~~i~fd~V~VP~~~lL~~  255 (267)
T d2ddha3         178 GGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGITVGDIGPKFGYEEMDNGYLKMDNYRIPRENMLMK  255 (267)
T ss_dssp             TTTTTTCSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECCCCSSCTTCCCEEEEESSEEEEGGGBCCS
T ss_pred             CCCcccCCEEEEeeeccCCCCCCccEEEEEEecCcCccCCCCCeEeccCCCccccCCCceEEEEEeeEEECHHHhCCC
Confidence            99 678999999999853   24799999984       568999999999999999999999999999999999975

>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: acyl-CoA oxidase N-terminal domains
domain: Acyl-coenzyme A oxidase 1, domains 1 and 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.97  E-value=1.4e-30  Score=231.58  Aligned_cols=208  Identities=23%  Similarity=0.349  Sum_probs=154.5

Q ss_pred             CHHHHHHHHHHHHHHHhhccccHHHHHHhCCCC-hhHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcch
Q 020535           56 TSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFP-FHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCS  133 (325)
Q Consensus        56 ~~~~~~l~~~~~~f~~~~~~~~~~~~d~~~~~p-~~~~~~l~~~Gl~~~-~p~~~GG~g~s~~~~~~v~e~la~~~~s~~  133 (325)
                      .+++.++++.+++|+++.  |.... +....+. .+.++...+...... ...++|.   +......+...+..     +
T Consensus        27 ~ee~~~~r~~v~~~~~~d--p~f~~-~~~~~~sr~e~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~-----~   95 (271)
T d1w07a3          27 SRHAFEVSDRIARLVASD--PVFEK-SNRARLSRKELFKSTLRKCAHAFKRIIELRL---NEEEAGRLRHFIDQ-----P   95 (271)
T ss_dssp             SHHHHHHHHHHHHHHHTC--GGGCC-TTTTSSCHHHHHHHHHHHHHHHHHHHHHTTC---CHHHHHHHHHHHCC-----C
T ss_pred             CHHHHHHHHHHHHHHhcC--cccCC-CCcCCCCHHHHHHHHHHHHHHHHHHHHHcCC---ChhhhHHHHHHhcc-----c
Confidence            467778888888888753  22111 0111122 244444333322222 2334433   33344433333322     2


Q ss_pred             hHHHHhhhHHHHHHHhcCCHHHHHhhchhhhcCCceeEEEecCCCCCCCCCCCceEEEEe--CCEEEEEe-----Eeecc
Q 020535          134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILEG-----QKRWI  206 (325)
Q Consensus       134 ~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~~~a~~~--~~g~~lnG-----~K~~i  206 (325)
                      ..+.+|..+....|..+||++||++|||++.+|+.++|+|+|||++|||+.+++|+|+++  ++.|+|||     +|+||
T Consensus        96 ~~~~vh~~~~~~~i~~~Gt~eQk~~~Lp~l~~G~~~~~~a~TEp~~GSd~~~l~T~A~~d~~gd~~vlng~k~~~~K~wi  175 (271)
T d1w07a3          96 AYVDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQTASKWWP  175 (271)
T ss_dssp             CHHHHHHHTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCSGGGSEECC
T ss_pred             hHHHHHHHhhHHHHHhhCCHHHHHHhhHHHhCCCeEEEecccCCccccCcccccceeeecCCCceeeecccccceeeecc
Confidence            235577777788999999999999999999999999999999999999999999999988  55699999     89999


Q ss_pred             cC-CCCCCEEEEEEEeCC---CCCeEEEEEe-------CCCCCeEEeccCCccC---ccccceeeEEEeeeeeCCCCCcC
Q 020535          207 GN-STFADVLVIFARNTT---TNQINGYLVK-------KDAPGLTVTKIENKIG---LRIVQNGDILLKKVFVPDEDRLP  272 (325)
Q Consensus       207 t~-~~~Ad~~~v~a~~~~---~~~~~~~lv~-------~~~~Gv~~~~~~~~~G---~~~~~~~~v~f~~v~Vp~~~~lg  272 (325)
                      +| +..|++++|+|++..   +.++++|+|+       .+.|||++.+...++|   +++++++.|.|+||+||.+++||
T Consensus       176 ~~~g~~a~~~vv~a~~~~~~~~~g~~~flV~~~~~~~~~~~pGv~v~~~~~k~G~~~~~~~~~~~i~Fd~VrVP~~~lLg  255 (271)
T d1w07a3         176 GGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQMLM  255 (271)
T ss_dssp             TTTTTTCSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECCCBSSSSGGGGSCCEEEEESSEEEEGGGBCC
T ss_pred             CCchhhhhhhheeeeecCCCCCCCEEEEEEeccccCCCCCCCceEEcccccccCccccCCCceEEEEEeeEEECHHHcCC
Confidence            98 667999999999843   3468999999       4568999999999998   68889999999999999999998


Q ss_pred             CC
Q 020535          273 GV  274 (325)
Q Consensus       273 ~~  274 (325)
                      +.
T Consensus       256 ~~  257 (271)
T d1w07a3         256 RL  257 (271)
T ss_dssp             SS
T ss_pred             CC
Confidence            73

>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains
species: Clostridium aminobutyricum [TaxId: 33953]

Probab=99.87  E-value=6.6e-22  Score=175.58  Aligned_cols=128  Identities=17%  Similarity=0.231  Sum_probs=111.6

Q ss_pred             HHHHHhcCCH--HHHHhhchhhhcCCceeEEEecCCCCCCCCCC--------CceEEEEeCCEEEEEeEeecccCCCCCC
Q 020535          144 MLTIALCGSE--EQKQKYLPSLAQLNTIACWALTEPAYGSDASA--------LNTTATKVEGGWILEGQKRWIGNSTFAD  213 (325)
Q Consensus       144 ~~~l~~~g~~--~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~--------~~~~a~~~~~g~~lnG~K~~it~~~~Ad  213 (325)
                      ...+..+|++  +|+++|++.+.+++++.|.++|||..|+|...        ..++++++++||+|||+|.|+|+++.||
T Consensus       117 ~~~~~~~g~~~~e~~~~yl~~~~~~dl~~t~altePq~dr~~~~~~q~~~~~~~~v~~~~~~g~vvnG~K~~~T~a~~ad  196 (275)
T d1u8va2         117 YEIDQKYGTNYHKNFTEYLKYIQENDLIVDGAMTDPKGDRGLAPSAQKDPDLFLRIVEKREDGIVVRGAKAHQTGSINSH  196 (275)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHTCCEEEECCCCCSCTTSCGGGCSSTTSSCEEEEECSSEEEEEEEECSCTTCTTCS
T ss_pred             HHHhhhhCcHHHHHHHHHHHHHHhCCeEEEEeeecCCCCCccChhhccCccceEEEEEecCCEEEEeeEEEEecCCCccc
Confidence            3466788888  88899999999999999999999999998754        3466778899999999999999999999


Q ss_pred             EEEEEEEeCC----CCCeEEEEEeCCCCCeEEeccCCccCccccce---------------eeEEEeeeeeCCCCCc
Q 020535          214 VLVIFARNTT----TNQINGYLVKKDAPGLTVTKIENKIGLRIVQN---------------GDILLKKVFVPDEDRL  271 (325)
Q Consensus       214 ~~~v~a~~~~----~~~~~~~lv~~~~~Gv~~~~~~~~~G~~~~~~---------------~~v~f~~v~Vp~~~~l  271 (325)
                      +++|+++++.    .+++++|+||.++|||++...++++|+|++.+               +.|.||||+||.++++
T Consensus       197 ~~~v~~~~~~~~~~~~~~~~f~Vp~~tpGv~~~~~~~~~~~r~~~~~~~~~~~s~~f~e~da~vvFddV~VP~e~Vf  273 (275)
T d1u8va2         197 EHIIMPTIAMTEADKDYAVSFACPSDADGLFMIYGRQSCDTRKMEEGADIDLGNKQFGGQEALVVFDNVFIPNDRIF  273 (275)
T ss_dssp             EEEECCSSCCCGGGGGGCEEEEEETTCTTEEEEECCCTTGGGGGSTTCCGGGSSSSCCCCCEEEEEEEEEEEGGGEE
T ss_pred             eEEEEeccCCCCCCCCcEEEEEEeCCCCCeEEecccCCcCCcccCCCCCccccccccCCceeEEEeceEECcHHHee
Confidence            9999998753    24688999999999999998889999987654               4599999999999875